Query 011581
Match_columns 482
No_of_seqs 459 out of 3500
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03126 Elongation factor Tu; 100.0 1.9E-79 4E-84 630.6 51.0 418 65-482 61-478 (478)
2 COG0050 TufB GTPases - transla 100.0 2.7E-80 5.8E-85 568.1 36.8 393 75-482 2-394 (394)
3 KOG0460 Mitochondrial translat 100.0 1.3E-79 2.9E-84 573.4 29.9 394 76-482 45-438 (449)
4 COG5256 TEF1 Translation elong 100.0 4.7E-78 1E-82 582.6 38.7 388 81-482 3-428 (428)
5 CHL00071 tufA elongation facto 100.0 3.1E-74 6.7E-79 588.0 48.0 407 76-482 3-409 (409)
6 PRK12736 elongation factor Tu; 100.0 1.5E-73 3.3E-78 580.2 47.2 392 76-482 3-394 (394)
7 PRK12735 elongation factor Tu; 100.0 2.8E-73 6E-78 578.6 47.2 395 75-482 2-396 (396)
8 TIGR00485 EF-Tu translation el 100.0 4.4E-73 9.4E-78 577.7 48.1 392 76-482 3-394 (394)
9 PRK00049 elongation factor Tu; 100.0 1.3E-72 2.7E-77 573.3 47.8 394 76-482 3-396 (396)
10 PLN00043 elongation factor 1-a 100.0 2.2E-72 4.7E-77 576.6 45.4 387 81-481 3-430 (447)
11 PLN03127 Elongation factor Tu; 100.0 1.7E-71 3.7E-76 569.3 48.6 396 74-482 50-447 (447)
12 PTZ00141 elongation factor 1- 100.0 2.1E-71 4.5E-76 569.9 44.8 387 81-481 3-430 (446)
13 PRK12317 elongation factor 1-a 100.0 4.3E-69 9.2E-74 554.8 43.9 387 82-482 3-422 (425)
14 TIGR00483 EF-1_alpha translati 100.0 2.6E-68 5.7E-73 548.8 44.5 387 81-481 3-423 (426)
15 PRK05124 cysN sulfate adenylyl 100.0 1.8E-63 3.8E-68 514.9 43.2 386 78-481 20-438 (474)
16 KOG0458 Elongation factor 1 al 100.0 2.4E-64 5.2E-69 503.1 33.9 389 83-482 175-603 (603)
17 TIGR02034 CysN sulfate adenyly 100.0 3.6E-63 7.7E-68 505.6 41.0 373 86-477 1-406 (406)
18 COG2895 CysN GTPases - Sulfate 100.0 1.2E-62 2.6E-67 462.9 33.3 378 82-480 3-415 (431)
19 PRK05506 bifunctional sulfate 100.0 3.2E-60 6.9E-65 509.9 42.9 382 81-481 20-434 (632)
20 PTZ00327 eukaryotic translatio 100.0 6.2E-60 1.4E-64 482.5 40.9 352 81-479 30-451 (460)
21 COG5258 GTPBP1 GTPase [General 100.0 5.4E-60 1.2E-64 448.1 29.6 365 82-481 114-527 (527)
22 KOG0459 Polypeptide release fa 100.0 9E-59 2E-63 442.6 30.1 385 82-482 76-501 (501)
23 PRK04000 translation initiatio 100.0 6.7E-57 1.4E-61 459.3 40.8 351 79-477 3-410 (411)
24 PRK10512 selenocysteinyl-tRNA- 100.0 6.4E-57 1.4E-61 477.4 40.2 336 87-481 2-341 (614)
25 TIGR03680 eif2g_arch translati 100.0 3.6E-56 7.7E-61 454.5 40.9 347 83-477 2-405 (406)
26 KOG0463 GTP-binding protein GP 100.0 2.9E-58 6.4E-63 434.6 16.8 410 38-482 78-548 (641)
27 TIGR00475 selB selenocysteine- 100.0 4.4E-53 9.6E-58 447.2 41.6 336 86-480 1-338 (581)
28 COG3276 SelB Selenocysteine-sp 100.0 4E-52 8.7E-57 405.4 32.0 336 87-465 2-338 (447)
29 KOG1143 Predicted translation 100.0 7.2E-54 1.6E-58 404.6 18.9 409 40-482 109-584 (591)
30 COG5257 GCD11 Translation init 100.0 1.8E-45 3.8E-50 342.5 32.6 349 83-479 8-413 (415)
31 TIGR01394 TypA_BipA GTP-bindin 100.0 5.2E-42 1.1E-46 362.0 32.5 282 85-381 1-289 (594)
32 KOG0461 Selenocysteine-specifi 100.0 2.9E-40 6.3E-45 309.7 23.8 344 85-460 7-379 (522)
33 PRK10218 GTP-binding protein; 100.0 1.8E-39 3.8E-44 342.1 30.9 283 84-381 4-293 (607)
34 COG1217 TypA Predicted membran 100.0 1.3E-39 2.8E-44 316.4 24.6 285 83-382 3-294 (603)
35 KOG0462 Elongation factor-type 100.0 8.9E-40 1.9E-44 323.5 22.7 270 83-380 58-332 (650)
36 TIGR01393 lepA GTP-binding pro 100.0 4.8E-38 1E-42 332.8 31.7 268 84-381 2-278 (595)
37 PRK05433 GTP-binding protein L 100.0 6.2E-38 1.3E-42 332.3 30.5 269 83-381 5-282 (600)
38 COG0481 LepA Membrane GTPase L 100.0 1.4E-37 3E-42 303.2 23.0 271 82-380 6-283 (603)
39 cd01884 EF_Tu EF-Tu subfamily. 100.0 7.5E-36 1.6E-40 274.4 21.0 195 84-286 1-195 (195)
40 PRK07560 elongation factor EF- 100.0 9.9E-35 2.2E-39 316.5 27.3 298 76-380 11-375 (731)
41 PRK00007 elongation factor G; 100.0 1.5E-33 3.3E-38 305.5 30.4 284 83-380 8-394 (693)
42 PRK00741 prfC peptide chain re 100.0 2.9E-33 6.4E-38 292.0 29.7 269 83-380 8-380 (526)
43 COG0480 FusA Translation elong 100.0 1.3E-33 2.9E-38 299.1 27.3 290 82-380 7-392 (697)
44 PRK12739 elongation factor G; 100.0 3E-33 6.5E-38 303.4 28.6 283 84-380 7-391 (691)
45 TIGR00503 prfC peptide chain r 100.0 9.4E-33 2E-37 288.2 29.7 269 83-380 9-381 (527)
46 PRK05306 infB translation init 100.0 8.4E-33 1.8E-37 297.5 27.3 247 83-377 288-541 (787)
47 TIGR00484 EF-G translation elo 100.0 2E-32 4.4E-37 297.1 29.8 285 83-380 8-392 (689)
48 TIGR00487 IF-2 translation ini 100.0 2.3E-32 5E-37 288.1 29.3 245 84-377 86-339 (587)
49 COG4108 PrfC Peptide chain rel 100.0 7.1E-33 1.5E-37 268.3 20.7 272 85-381 12-383 (528)
50 PRK13351 elongation factor G; 100.0 2.3E-31 5.1E-36 289.6 29.6 270 84-380 7-390 (687)
51 TIGR00490 aEF-2 translation el 100.0 1.6E-31 3.5E-36 290.6 25.6 297 77-380 11-374 (720)
52 PF00009 GTP_EFTU: Elongation 100.0 4.3E-32 9.3E-37 249.3 17.5 182 83-285 1-188 (188)
53 PRK12740 elongation factor G; 100.0 1.5E-30 3.2E-35 282.9 27.9 263 91-380 1-373 (668)
54 KOG0466 Translation initiation 100.0 2.5E-32 5.3E-37 252.6 11.0 348 82-478 35-457 (466)
55 CHL00189 infB translation init 100.0 1.6E-30 3.4E-35 277.5 26.3 248 83-377 242-499 (742)
56 KOG0052 Translation elongation 100.0 1.5E-32 3.3E-37 265.4 9.4 332 81-481 3-372 (391)
57 PLN00116 translation elongatio 100.0 9.4E-30 2E-34 280.5 29.1 302 74-380 8-471 (843)
58 PRK04004 translation initiatio 100.0 1.2E-29 2.7E-34 268.0 28.3 256 84-376 5-325 (586)
59 cd01883 EF1_alpha Eukaryotic e 100.0 1.3E-30 2.9E-35 245.0 18.1 192 87-284 1-217 (219)
60 TIGR00491 aIF-2 translation in 100.0 1.7E-29 3.7E-34 265.8 27.7 245 85-364 4-313 (590)
61 KOG0465 Mitochondrial elongati 100.0 4.2E-31 9.1E-36 264.6 13.2 270 83-380 37-421 (721)
62 cd04166 CysN_ATPS CysN_ATPS su 100.0 8.4E-30 1.8E-34 237.7 18.4 190 87-284 1-206 (208)
63 PTZ00416 elongation factor 2; 100.0 3.2E-28 6.9E-33 267.9 30.7 298 77-380 11-467 (836)
64 COG0532 InfB Translation initi 100.0 6.8E-29 1.5E-33 249.1 20.7 232 84-360 4-245 (509)
65 KOG1145 Mitochondrial translat 100.0 6E-29 1.3E-33 246.6 19.9 235 84-361 152-392 (683)
66 cd01885 EF2 EF2 (for archaea a 100.0 2.2E-27 4.8E-32 221.8 17.1 190 86-286 1-222 (222)
67 cd01888 eIF2_gamma eIF2-gamma 99.9 3.3E-26 7.1E-31 212.7 17.3 168 86-287 1-202 (203)
68 PRK14845 translation initiatio 99.9 3.6E-25 7.7E-30 243.2 25.5 242 98-376 474-780 (1049)
69 cd01886 EF-G Elongation factor 99.9 1.6E-25 3.5E-30 215.8 18.1 128 87-215 1-130 (270)
70 cd01891 TypA_BipA TypA (tyrosi 99.9 3.9E-25 8.4E-30 204.2 19.8 191 85-286 2-194 (194)
71 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.7E-25 3.6E-30 210.1 17.2 176 87-285 1-223 (224)
72 cd01889 SelB_euk SelB subfamil 99.9 3.6E-25 7.7E-30 204.1 19.1 172 86-287 1-189 (192)
73 cd04168 TetM_like Tet(M)-like 99.9 3.4E-25 7.3E-30 210.0 18.2 127 87-215 1-130 (237)
74 cd04169 RF3 RF3 subfamily. Pe 99.9 3.8E-24 8.2E-29 206.2 18.9 130 85-215 2-137 (267)
75 cd04167 Snu114p Snu114p subfam 99.9 1.3E-23 2.9E-28 196.7 18.5 190 86-286 1-213 (213)
76 KOG0469 Elongation factor 2 [T 99.9 3.2E-24 7E-29 210.3 14.5 303 71-376 5-470 (842)
77 cd01890 LepA LepA subfamily. 99.9 1.5E-23 3.3E-28 190.7 18.1 174 86-286 1-179 (179)
78 cd00881 GTP_translation_factor 99.9 2.3E-23 5E-28 190.8 19.2 180 87-286 1-189 (189)
79 KOG0464 Elongation factor G [T 99.9 1.9E-25 4.1E-30 214.5 4.9 287 85-379 37-418 (753)
80 cd04171 SelB SelB subfamily. 99.9 3.1E-23 6.7E-28 185.4 19.0 162 86-281 1-163 (164)
81 KOG1144 Translation initiation 99.9 3.1E-23 6.7E-28 211.4 13.2 242 85-361 475-794 (1064)
82 cd04170 EF-G_bact Elongation f 99.9 5.7E-22 1.2E-26 192.3 17.0 128 87-215 1-130 (268)
83 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.3E-20 2.8E-25 169.3 17.5 159 87-282 2-164 (168)
84 KOG0467 Translation elongation 99.9 5.3E-20 1.2E-24 189.2 23.4 130 83-213 7-136 (887)
85 PF02421 FeoB_N: Ferrous iron 99.8 2.9E-21 6.3E-26 169.1 9.3 148 86-279 1-156 (156)
86 COG1160 Predicted GTPases [Gen 99.8 1.8E-20 3.9E-25 185.8 14.7 149 84-252 177-337 (444)
87 COG1159 Era GTPase [General fu 99.8 3.3E-20 7.2E-25 174.5 15.2 161 84-285 5-173 (298)
88 COG1160 Predicted GTPases [Gen 99.8 5.2E-20 1.1E-24 182.5 16.4 153 86-284 4-165 (444)
89 TIGR03594 GTPase_EngA ribosome 99.8 5.7E-20 1.2E-24 190.5 16.1 150 84-253 171-331 (429)
90 TIGR00436 era GTP-binding prot 99.8 1.8E-19 3.8E-24 174.9 16.8 156 87-285 2-165 (270)
91 PRK00093 GTP-binding protein D 99.8 1.7E-19 3.7E-24 187.2 17.7 150 83-253 171-331 (435)
92 cd01895 EngA2 EngA2 subfamily. 99.8 7.2E-19 1.6E-23 158.2 16.7 159 85-281 2-172 (174)
93 cd01894 EngA1 EngA1 subfamily. 99.8 3.2E-19 7E-24 158.0 13.6 148 89-282 1-156 (157)
94 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.2E-19 7E-24 160.2 13.4 159 87-281 1-166 (167)
95 cd01864 Rab19 Rab19 subfamily. 99.8 2.3E-18 4.9E-23 154.5 16.1 156 85-282 3-164 (165)
96 PRK15494 era GTPase Era; Provi 99.8 1.6E-18 3.5E-23 173.0 16.3 160 83-285 50-217 (339)
97 cd04154 Arl2 Arl2 subfamily. 99.8 2E-18 4.3E-23 156.2 15.3 158 81-281 10-172 (173)
98 PF03143 GTP_EFTU_D3: Elongati 99.8 5.7E-19 1.2E-23 143.9 10.5 95 382-481 2-99 (99)
99 cd03693 EF1_alpha_II EF1_alpha 99.8 9.4E-19 2E-23 140.3 11.6 89 291-381 2-90 (91)
100 KOG0468 U5 snRNP-specific prot 99.8 2.6E-17 5.6E-22 166.9 24.4 135 79-214 122-262 (971)
101 PRK03003 GTP-binding protein D 99.8 3.3E-18 7.1E-23 178.6 17.6 149 84-253 210-369 (472)
102 TIGR03594 GTPase_EngA ribosome 99.8 4.8E-18 1E-22 176.1 17.1 153 87-285 1-161 (429)
103 TIGR03598 GTPase_YsxC ribosome 99.8 6.3E-18 1.4E-22 153.9 15.6 150 81-252 14-176 (179)
104 cd01898 Obg Obg subfamily. Th 99.8 4.3E-18 9.4E-23 153.2 14.3 153 87-282 2-169 (170)
105 PRK00089 era GTPase Era; Revie 99.8 9.2E-18 2E-22 165.0 17.7 159 85-285 5-172 (292)
106 cd01897 NOG NOG1 is a nucleola 99.8 9.8E-18 2.1E-22 150.7 15.5 153 86-283 1-167 (168)
107 cd04145 M_R_Ras_like M-Ras/R-R 99.8 9E-18 1.9E-22 150.1 14.3 155 85-282 2-162 (164)
108 cd04157 Arl6 Arl6 subfamily. 99.8 1E-17 2.2E-22 149.4 14.6 154 87-281 1-161 (162)
109 cd04106 Rab23_lke Rab23-like s 99.8 1.2E-17 2.5E-22 149.2 14.9 153 86-281 1-160 (162)
110 cd01860 Rab5_related Rab5-rela 99.8 1E-17 2.3E-22 149.6 14.3 157 86-283 2-162 (163)
111 PRK03003 GTP-binding protein D 99.8 1.9E-17 4E-22 173.0 17.8 157 83-285 36-200 (472)
112 cd01879 FeoB Ferrous iron tran 99.8 4.7E-18 1E-22 150.9 11.4 147 90-282 1-155 (158)
113 cd01861 Rab6 Rab6 subfamily. 99.8 2E-17 4.2E-22 147.5 15.4 154 86-282 1-160 (161)
114 cd04114 Rab30 Rab30 subfamily. 99.8 1.9E-17 4.1E-22 148.9 15.2 157 83-282 5-167 (169)
115 cd04151 Arl1 Arl1 subfamily. 99.8 1.5E-17 3.1E-22 148.2 14.3 152 87-281 1-157 (158)
116 cd01878 HflX HflX subfamily. 99.8 2.6E-17 5.7E-22 153.1 16.1 155 80-282 36-203 (204)
117 cd04113 Rab4 Rab4 subfamily. 99.8 1.9E-17 4.1E-22 147.8 14.5 153 86-281 1-159 (161)
118 cd03698 eRF3_II_like eRF3_II_l 99.8 1.1E-17 2.3E-22 131.9 11.3 83 293-378 1-83 (83)
119 cd03694 GTPBP_II Domain II of 99.7 7.2E-18 1.6E-22 133.9 10.3 85 294-378 1-87 (87)
120 cd04124 RabL2 RabL2 subfamily. 99.7 3.6E-17 7.9E-22 146.2 16.1 152 86-283 1-157 (161)
121 TIGR03156 GTP_HflX GTP-binding 99.7 2.7E-17 5.9E-22 164.4 16.8 150 83-282 187-350 (351)
122 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.5E-17 3.3E-22 147.1 13.3 146 86-282 2-155 (157)
123 TIGR00231 small_GTP small GTP- 99.7 1.4E-17 3E-22 146.8 13.0 150 86-280 2-160 (161)
124 PRK09518 bifunctional cytidyla 99.7 2.6E-17 5.7E-22 179.7 17.5 148 84-252 449-607 (712)
125 smart00175 RAB Rab subfamily o 99.7 3.4E-17 7.3E-22 146.3 14.6 155 86-283 1-161 (164)
126 cd04149 Arf6 Arf6 subfamily. 99.7 3.4E-17 7.3E-22 147.5 14.3 155 84-281 8-167 (168)
127 COG0218 Predicted GTPase [Gene 99.7 1E-16 2.2E-21 143.3 17.0 161 84-283 23-196 (200)
128 PRK05291 trmE tRNA modificatio 99.7 1.3E-17 2.8E-22 172.4 13.1 150 83-284 213-370 (449)
129 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 4.1E-17 8.8E-22 151.5 15.0 156 86-283 1-167 (201)
130 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.2E-17 1.1E-21 145.7 15.2 155 85-282 2-162 (166)
131 cd01862 Rab7 Rab7 subfamily. 99.7 5.8E-17 1.3E-21 146.0 15.5 156 86-283 1-166 (172)
132 cd04163 Era Era subfamily. Er 99.7 7.9E-17 1.7E-21 143.6 16.2 157 85-282 3-167 (168)
133 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.6E-17 1.2E-21 147.0 15.3 155 84-281 14-173 (174)
134 PRK00093 GTP-binding protein D 99.7 4.9E-17 1.1E-21 168.8 17.0 152 86-283 2-161 (435)
135 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.6E-17 7.8E-22 145.6 13.8 154 86-282 2-160 (162)
136 PRK04213 GTP-binding protein; 99.7 8.2E-17 1.8E-21 149.4 16.7 160 83-285 7-193 (201)
137 cd01867 Rab8_Rab10_Rab13_like 99.7 6.3E-17 1.4E-21 145.5 15.4 155 85-282 3-163 (167)
138 PRK15467 ethanolamine utilizat 99.7 2.9E-17 6.2E-22 146.3 13.0 141 87-284 3-147 (158)
139 PRK00454 engB GTP-binding prot 99.7 1.2E-16 2.5E-21 147.6 17.5 159 83-283 22-193 (196)
140 cd03697 EFTU_II EFTU_II: Elong 99.7 1.4E-17 3E-22 132.4 9.7 87 294-380 1-87 (87)
141 cd04127 Rab27A Rab27a subfamil 99.7 5.5E-17 1.2E-21 147.6 15.0 156 84-282 3-175 (180)
142 cd03704 eRF3c_III This family 99.7 2.8E-17 6E-22 136.6 11.7 93 384-480 2-108 (108)
143 cd04120 Rab12 Rab12 subfamily. 99.7 8.9E-17 1.9E-21 148.8 16.3 155 86-282 1-161 (202)
144 cd00154 Rab Rab family. Rab G 99.7 6.3E-17 1.4E-21 143.0 14.7 152 86-280 1-158 (159)
145 cd00878 Arf_Arl Arf (ADP-ribos 99.7 3.3E-17 7.1E-22 145.7 12.9 152 87-281 1-157 (158)
146 smart00173 RAS Ras subfamily o 99.7 2.7E-17 5.9E-22 147.1 12.4 155 86-283 1-161 (164)
147 cd04150 Arf1_5_like Arf1-Arf5- 99.7 9.3E-17 2E-21 143.3 15.6 153 86-281 1-158 (159)
148 cd01866 Rab2 Rab2 subfamily. 99.7 5.8E-17 1.3E-21 145.9 14.4 158 84-282 3-164 (168)
149 cd01868 Rab11_like Rab11-like. 99.7 8.5E-17 1.8E-21 144.1 15.3 155 85-282 3-163 (165)
150 cd01865 Rab3 Rab3 subfamily. 99.7 8.7E-17 1.9E-21 144.3 15.0 157 86-283 2-162 (165)
151 cd01863 Rab18 Rab18 subfamily. 99.7 5.9E-17 1.3E-21 144.5 13.8 154 86-281 1-159 (161)
152 cd04116 Rab9 Rab9 subfamily. 99.7 1E-16 2.2E-21 144.4 15.5 155 84-281 4-168 (170)
153 cd01893 Miro1 Miro1 subfamily. 99.7 1.2E-16 2.7E-21 143.4 16.0 159 86-283 1-163 (166)
154 cd00879 Sar1 Sar1 subfamily. 99.7 6.9E-17 1.5E-21 148.4 14.3 158 82-282 16-189 (190)
155 cd04136 Rap_like Rap-like subf 99.7 8.3E-17 1.8E-21 143.7 14.2 154 86-282 2-161 (163)
156 cd04140 ARHI_like ARHI subfami 99.7 9.6E-17 2.1E-21 144.0 14.7 154 86-282 2-163 (165)
157 cd04155 Arl3 Arl3 subfamily. 99.7 1.2E-16 2.5E-21 144.4 15.1 161 78-281 7-172 (173)
158 cd04112 Rab26 Rab26 subfamily. 99.7 6.3E-17 1.4E-21 148.9 13.4 157 86-284 1-163 (191)
159 TIGR02528 EutP ethanolamine ut 99.7 2.8E-17 6E-22 143.6 10.5 136 87-280 2-141 (142)
160 cd04158 ARD1 ARD1 subfamily. 99.7 6.6E-17 1.4E-21 145.7 13.2 155 87-284 1-161 (169)
161 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.1E-16 2.3E-21 146.3 14.8 160 85-283 3-169 (183)
162 cd04119 RJL RJL (RabJ-Like) su 99.7 1.4E-16 3.1E-21 142.7 15.3 154 86-282 1-165 (168)
163 cd03706 mtEFTU_III Domain III 99.7 9E-17 1.9E-21 129.6 12.5 92 384-480 2-93 (93)
164 smart00177 ARF ARF-like small 99.7 1.6E-16 3.4E-21 144.1 15.7 156 84-282 12-172 (175)
165 cd04122 Rab14 Rab14 subfamily. 99.7 1.2E-16 2.7E-21 143.4 14.8 154 85-281 2-161 (166)
166 PLN00223 ADP-ribosylation fact 99.7 1.6E-16 3.5E-21 144.9 15.7 158 83-283 15-177 (181)
167 cd04089 eRF3_II eRF3_II: domai 99.7 6.8E-17 1.5E-21 127.0 11.2 82 293-378 1-82 (82)
168 cd04110 Rab35 Rab35 subfamily. 99.7 1.5E-16 3.2E-21 147.5 15.4 157 84-283 5-166 (199)
169 PRK09518 bifunctional cytidyla 99.7 1.5E-16 3.2E-21 173.9 17.8 155 85-285 275-437 (712)
170 PRK09554 feoB ferrous iron tra 99.7 6.7E-17 1.5E-21 175.8 15.1 153 85-283 3-167 (772)
171 PRK12299 obgE GTPase CgtA; Rev 99.7 1.5E-16 3.2E-21 157.9 16.1 157 85-284 158-328 (335)
172 PLN03118 Rab family protein; P 99.7 1.3E-16 2.8E-21 149.3 14.8 158 84-283 13-176 (211)
173 PRK12298 obgE GTPase CgtA; Rev 99.7 1.4E-16 3.1E-21 161.0 15.8 157 86-284 160-333 (390)
174 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.5E-16 5.3E-21 142.1 15.8 158 85-282 2-167 (170)
175 cd04093 HBS1_C HBS1_C: this fa 99.7 1.6E-16 3.4E-21 131.9 12.6 92 384-480 2-107 (107)
176 PTZ00369 Ras-like protein; Pro 99.7 9.8E-17 2.1E-21 147.4 12.5 158 84-283 4-166 (189)
177 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.8E-16 6E-21 140.0 14.9 153 87-281 1-159 (160)
178 cd04175 Rap1 Rap1 subgroup. T 99.7 2E-16 4.3E-21 141.6 14.0 154 86-283 2-162 (164)
179 cd04161 Arl2l1_Arl13_like Arl2 99.7 2E-16 4.4E-21 142.3 13.8 159 87-281 1-166 (167)
180 KOG0092 GTPase Rab5/YPT51 and 99.7 1.4E-16 3.1E-21 139.7 12.2 161 84-286 4-169 (200)
181 cd04109 Rab28 Rab28 subfamily. 99.7 2.6E-16 5.6E-21 147.6 14.9 155 86-283 1-165 (215)
182 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.7E-16 3.8E-21 143.4 13.3 155 86-283 3-163 (172)
183 cd04123 Rab21 Rab21 subfamily. 99.7 3.5E-16 7.5E-21 139.3 15.1 154 86-282 1-160 (162)
184 cd04144 Ras2 Ras2 subfamily. 99.7 1.3E-16 2.8E-21 146.7 12.6 154 87-283 1-162 (190)
185 cd00880 Era_like Era (E. coli 99.7 2.8E-16 6.1E-21 138.6 14.3 154 90-282 1-162 (163)
186 smart00178 SAR Sar1p-like memb 99.7 3.2E-16 6.9E-21 143.3 15.1 156 83-281 15-182 (184)
187 cd00157 Rho Rho (Ras homology) 99.7 1.6E-16 3.5E-21 143.0 12.9 157 86-281 1-170 (171)
188 cd01874 Cdc42 Cdc42 subfamily. 99.7 3.6E-16 7.7E-21 141.8 15.1 156 86-281 2-172 (175)
189 PTZ00133 ADP-ribosylation fact 99.7 3.1E-16 6.7E-21 143.2 14.8 157 84-283 16-177 (182)
190 COG2229 Predicted GTPase [Gene 99.7 9.5E-16 2.1E-20 134.0 16.9 155 83-252 8-164 (187)
191 TIGR02729 Obg_CgtA Obg family 99.7 3.7E-16 8.1E-21 154.9 16.3 155 85-283 157-328 (329)
192 cd04159 Arl10_like Arl10-like 99.7 3.6E-16 7.9E-21 138.2 14.6 152 88-281 2-158 (159)
193 cd04176 Rap2 Rap2 subgroup. T 99.7 2.6E-16 5.5E-21 140.7 13.7 155 86-283 2-162 (163)
194 cd04121 Rab40 Rab40 subfamily. 99.7 4.6E-16 1E-20 142.6 15.5 157 84-283 5-166 (189)
195 cd01882 BMS1 Bms1. Bms1 is an 99.7 2.1E-15 4.5E-20 142.1 20.3 185 83-304 37-221 (225)
196 cd04118 Rab24 Rab24 subfamily. 99.7 2.7E-16 5.8E-21 144.9 14.0 161 86-283 1-165 (193)
197 cd04135 Tc10 TC10 subfamily. 99.7 3.2E-16 6.8E-21 141.7 14.2 157 86-281 1-171 (174)
198 COG0486 ThdF Predicted GTPase 99.7 1.5E-16 3.2E-21 158.5 12.9 153 84-284 216-376 (454)
199 cd04139 RalA_RalB RalA/RalB su 99.7 2E-16 4.3E-21 141.2 12.7 154 86-283 1-161 (164)
200 cd04147 Ras_dva Ras-dva subfam 99.7 2.6E-16 5.6E-21 145.7 13.5 156 87-284 1-163 (198)
201 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 5.9E-16 1.3E-20 139.7 15.3 157 87-283 2-164 (170)
202 cd04177 RSR1 RSR1 subgroup. R 99.7 3.3E-16 7.1E-21 141.0 13.1 156 86-282 2-162 (168)
203 cd00877 Ran Ran (Ras-related n 99.7 3.1E-16 6.7E-21 140.9 12.8 153 86-283 1-158 (166)
204 cd01881 Obg_like The Obg-like 99.7 4.5E-16 9.7E-21 140.7 13.9 150 90-282 1-175 (176)
205 cd03696 selB_II selB_II: this 99.7 2.5E-16 5.4E-21 124.2 10.6 83 294-378 1-83 (83)
206 KOG1423 Ras-like GTPase ERA [C 99.7 5.9E-16 1.3E-20 144.8 14.7 169 81-284 68-271 (379)
207 cd03705 EF1_alpha_III Domain I 99.7 2.3E-16 5E-21 130.2 10.6 89 384-477 2-104 (104)
208 cd04101 RabL4 RabL4 (Rab-like4 99.7 7.5E-16 1.6E-20 137.8 14.8 156 86-282 1-162 (164)
209 PLN03110 Rab GTPase; Provision 99.7 6.1E-16 1.3E-20 145.1 14.8 157 84-283 11-173 (216)
210 cd04142 RRP22 RRP22 subfamily. 99.7 8.9E-16 1.9E-20 141.9 15.5 156 86-283 1-173 (198)
211 cd04134 Rho3 Rho3 subfamily. 99.7 7.2E-16 1.6E-20 141.6 14.7 160 86-284 1-174 (189)
212 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.4E-15 3E-20 138.8 16.4 157 86-283 1-165 (182)
213 PRK11058 GTPase HflX; Provisio 99.7 5.5E-16 1.2E-20 158.5 15.3 153 84-284 196-362 (426)
214 cd01875 RhoG RhoG subfamily. 99.7 1.8E-15 3.9E-20 139.2 17.0 158 85-283 3-176 (191)
215 cd01871 Rac1_like Rac1-like su 99.7 1.5E-15 3.3E-20 137.5 16.2 158 85-281 1-172 (174)
216 TIGR00450 mnmE_trmE_thdF tRNA 99.7 5.5E-16 1.2E-20 159.4 14.9 137 83-250 201-345 (442)
217 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 9.9E-16 2.1E-20 137.4 14.7 158 88-281 2-163 (164)
218 cd04132 Rho4_like Rho4-like su 99.7 8.1E-16 1.7E-20 140.9 14.4 159 86-283 1-166 (187)
219 PRK12296 obgE GTPase CgtA; Rev 99.7 9.5E-16 2E-20 157.7 16.2 157 83-283 157-339 (500)
220 cd03707 EFTU_III Domain III of 99.7 5.7E-16 1.2E-20 124.2 11.5 88 385-477 3-90 (90)
221 cd00876 Ras Ras family. The R 99.7 1.1E-15 2.3E-20 135.8 14.0 152 87-282 1-159 (160)
222 cd04111 Rab39 Rab39 subfamily. 99.7 7.2E-16 1.6E-20 144.1 13.4 156 85-283 2-165 (211)
223 smart00174 RHO Rho (Ras homolo 99.7 9.5E-16 2.1E-20 138.6 13.8 156 88-282 1-170 (174)
224 cd04146 RERG_RasL11_like RERG/ 99.7 5.3E-16 1.1E-20 139.1 11.9 154 87-282 1-162 (165)
225 PRK12297 obgE GTPase CgtA; Rev 99.7 9.7E-16 2.1E-20 155.8 14.9 152 86-284 159-327 (424)
226 cd04137 RheB Rheb (Ras Homolog 99.7 9.4E-16 2E-20 139.5 13.3 155 86-283 2-162 (180)
227 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.5E-15 3.2E-20 133.9 13.6 146 82-252 6-158 (205)
228 PLN03071 GTP-binding nuclear p 99.7 1.4E-15 3.1E-20 142.9 14.6 156 83-283 11-171 (219)
229 cd01876 YihA_EngB The YihA (En 99.7 3.4E-15 7.3E-20 133.4 16.4 155 88-282 2-169 (170)
230 cd04125 RabA_like RabA-like su 99.7 1.3E-15 2.8E-20 139.8 13.9 157 86-283 1-161 (188)
231 cd04126 Rab20 Rab20 subfamily. 99.7 1.4E-15 3.1E-20 142.4 14.3 159 86-282 1-188 (220)
232 cd01870 RhoA_like RhoA-like su 99.7 2.1E-15 4.5E-20 136.5 14.9 157 86-281 2-172 (175)
233 cd04143 Rhes_like Rhes_like su 99.7 1.9E-15 4.1E-20 144.3 15.2 158 86-287 1-174 (247)
234 cd01892 Miro2 Miro2 subfamily. 99.7 1E-15 2.2E-20 138.1 12.6 160 83-283 2-165 (169)
235 PLN03108 Rab family protein; P 99.7 2.6E-15 5.6E-20 140.3 15.7 158 84-282 5-166 (210)
236 COG2262 HflX GTPases [General 99.7 1.2E-15 2.6E-20 149.4 13.8 158 79-284 186-356 (411)
237 cd04117 Rab15 Rab15 subfamily. 99.7 2.9E-15 6.3E-20 133.9 15.3 153 86-281 1-159 (161)
238 cd03695 CysN_NodQ_II CysN_NodQ 99.7 1.4E-15 3.1E-20 118.9 11.3 81 294-378 1-81 (81)
239 cd04133 Rop_like Rop subfamily 99.6 1.9E-15 4.1E-20 136.9 13.4 159 86-283 2-172 (176)
240 cd03708 GTPBP_III Domain III o 99.6 1.3E-15 2.8E-20 121.3 10.8 85 384-480 2-87 (87)
241 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 8E-15 1.7E-19 128.7 16.4 160 85-286 22-187 (221)
242 PF00025 Arf: ADP-ribosylation 99.6 1.9E-15 4.2E-20 136.9 13.2 160 79-281 8-173 (175)
243 KOG0394 Ras-related GTPase [Ge 99.6 1.7E-15 3.7E-20 131.5 12.0 152 81-254 5-166 (210)
244 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.3E-15 2.9E-20 137.7 11.8 155 86-280 1-170 (173)
245 cd01513 Translation_factor_III 99.6 2.4E-15 5.3E-20 123.7 11.7 89 384-477 2-102 (102)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 9.8E-15 2.1E-19 133.1 16.6 160 83-281 3-177 (182)
247 cd04148 RGK RGK subfamily. Th 99.6 3.3E-15 7.2E-20 140.6 13.5 156 86-283 1-162 (221)
248 cd04131 Rnd Rnd subfamily. Th 99.6 1.1E-14 2.5E-19 132.2 16.3 158 86-281 2-173 (178)
249 PF10662 PduV-EutP: Ethanolami 99.6 3.8E-15 8.2E-20 127.6 11.9 137 86-280 2-142 (143)
250 COG0370 FeoB Fe2+ transport sy 99.6 5.1E-15 1.1E-19 153.6 14.3 154 85-284 3-164 (653)
251 TIGR00437 feoB ferrous iron tr 99.6 3.1E-15 6.8E-20 159.3 13.0 145 92-282 1-153 (591)
252 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2.6E-14 5.7E-19 133.9 16.8 146 86-252 2-161 (222)
253 PF01926 MMR_HSR1: 50S ribosom 99.6 8.4E-15 1.8E-19 123.4 11.7 107 87-210 1-116 (116)
254 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.5E-14 5.4E-19 134.9 15.2 149 83-252 11-173 (232)
255 cd00882 Ras_like_GTPase Ras-li 99.6 1.7E-14 3.7E-19 125.6 12.8 148 90-280 1-156 (157)
256 cd01896 DRG The developmentall 99.6 3.4E-14 7.3E-19 134.6 15.4 82 87-184 2-90 (233)
257 smart00176 RAN Ran (Ras-relate 99.6 2.1E-14 4.5E-19 132.7 13.4 148 91-283 1-153 (200)
258 cd04104 p47_IIGP_like p47 (47- 99.6 4.7E-14 1E-18 130.4 15.7 163 86-286 2-186 (197)
259 cd04094 selB_III This family r 99.6 2.8E-14 6.1E-19 115.9 12.4 95 373-477 1-97 (97)
260 PRK09866 hypothetical protein; 99.6 8E-14 1.7E-18 144.1 17.5 103 147-252 229-339 (741)
261 COG1084 Predicted GTPase [Gene 99.6 1E-13 2.2E-18 132.0 16.2 133 69-218 148-297 (346)
262 KOG0078 GTP-binding protein SE 99.6 6.2E-14 1.3E-18 125.5 13.7 146 83-253 10-161 (207)
263 COG3596 Predicted GTPase [Gene 99.6 3.6E-14 7.9E-19 131.9 12.6 164 82-285 36-223 (296)
264 KOG0098 GTPase Rab2, small G p 99.5 7.5E-14 1.6E-18 121.7 12.8 144 84-252 5-154 (216)
265 cd04129 Rho2 Rho2 subfamily. 99.5 4.6E-14 1E-18 129.4 12.2 158 86-283 2-172 (187)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 9.6E-14 2.1E-18 128.3 14.3 166 86-284 1-184 (196)
267 cd04103 Centaurin_gamma Centau 99.5 6.6E-14 1.4E-18 124.7 12.7 149 86-281 1-156 (158)
268 cd04095 CysN_NoDQ_III TCysN_No 99.5 3.7E-14 8.1E-19 116.7 10.1 88 384-477 2-103 (103)
269 cd04105 SR_beta Signal recogni 99.5 1.5E-13 3.2E-18 127.6 15.3 128 86-231 1-142 (203)
270 PF00071 Ras: Ras family; Int 99.5 1.1E-13 2.3E-18 123.5 13.5 152 87-281 1-158 (162)
271 KOG0095 GTPase Rab30, small G 99.5 1.1E-13 2.3E-18 115.9 12.3 148 82-252 4-155 (213)
272 cd01850 CDC_Septin CDC/Septin. 99.5 2.4E-12 5.2E-17 124.8 21.7 151 84-248 3-184 (276)
273 KOG0080 GTPase Rab18, small G 99.5 1.4E-13 3E-18 116.8 11.1 144 84-252 10-160 (209)
274 KOG0073 GTP-binding ADP-ribosy 99.5 4.2E-13 9.1E-18 114.6 13.8 145 82-252 13-164 (185)
275 KOG1191 Mitochondrial GTPase [ 99.5 1.3E-13 2.8E-18 137.1 12.2 164 80-282 263-448 (531)
276 cd01873 RhoBTB RhoBTB subfamil 99.5 3E-13 6.5E-18 124.6 13.1 158 85-281 2-193 (195)
277 KOG1489 Predicted GTP-binding 99.5 2.6E-13 5.7E-18 128.0 12.4 153 85-281 196-364 (366)
278 KOG0087 GTPase Rab11/YPT3, sma 99.5 1.8E-13 3.8E-18 122.0 10.5 146 83-253 12-163 (222)
279 PTZ00132 GTP-binding nuclear p 99.5 8.1E-13 1.7E-17 123.9 14.8 144 82-252 6-154 (215)
280 KOG0075 GTP-binding ADP-ribosy 99.4 5.9E-13 1.3E-17 111.4 9.1 157 84-282 19-180 (186)
281 cd04102 RabL3 RabL3 (Rab-like3 99.4 3.5E-12 7.5E-17 117.9 14.7 114 86-216 1-144 (202)
282 PRK13768 GTPase; Provisional 99.4 4.3E-12 9.4E-17 121.6 14.6 178 86-285 3-248 (253)
283 PF09439 SRPRB: Signal recogni 99.4 1.8E-12 4E-17 116.1 10.7 125 86-231 4-145 (181)
284 PLN00023 GTP-binding protein; 99.4 4.4E-12 9.4E-17 123.2 14.0 139 83-236 19-189 (334)
285 COG1163 DRG Predicted GTPase [ 99.4 2.6E-12 5.7E-17 121.9 11.7 87 82-184 60-153 (365)
286 cd03688 eIF2_gamma_II eIF2_gam 99.4 4.1E-12 8.9E-17 102.3 11.0 90 290-379 2-112 (113)
287 PF08477 Miro: Miro-like prote 99.4 7.8E-13 1.7E-17 111.7 7.2 113 87-212 1-119 (119)
288 KOG0093 GTPase Rab3, small G p 99.4 3.7E-12 8E-17 106.6 10.8 145 85-252 21-169 (193)
289 COG1100 GTPase SAR1 and relate 99.4 1.1E-11 2.4E-16 116.4 14.6 116 85-217 5-127 (219)
290 COG0536 Obg Predicted GTPase [ 99.4 9.2E-12 2E-16 119.2 13.6 152 86-283 160-332 (369)
291 KOG0086 GTPase Rab4, small G p 99.4 1.9E-11 4.1E-16 102.9 13.8 147 83-253 7-158 (214)
292 PRK09435 membrane ATPase/prote 99.4 1.4E-11 3.1E-16 121.3 14.9 174 82-284 53-260 (332)
293 cd01853 Toc34_like Toc34-like 99.3 1E-10 2.2E-15 111.4 19.7 121 80-215 26-163 (249)
294 KOG0079 GTP-binding protein H- 99.3 1.1E-11 2.3E-16 103.9 11.1 142 86-252 9-155 (198)
295 KOG0070 GTP-binding ADP-ribosy 99.3 4.9E-12 1.1E-16 111.1 8.8 159 82-283 14-177 (181)
296 PF03029 ATP_bind_1: Conserved 99.3 6.3E-12 1.4E-16 119.0 10.1 168 90-281 1-234 (238)
297 COG5192 BMS1 GTP-binding prote 99.3 5.6E-11 1.2E-15 119.3 17.0 223 83-342 67-301 (1077)
298 KOG0076 GTP-binding ADP-ribosy 99.3 1.4E-11 3E-16 106.4 10.7 168 81-284 13-187 (197)
299 KOG0088 GTPase Rab21, small G 99.3 7.9E-12 1.7E-16 105.9 8.5 155 83-282 11-173 (218)
300 cd01899 Ygr210 Ygr210 subfamil 99.3 3.7E-11 8.1E-16 118.3 14.6 88 88-183 1-111 (318)
301 KOG0090 Signal recognition par 99.3 6.6E-11 1.4E-15 105.9 12.9 135 79-232 32-179 (238)
302 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 1.1E-10 2.3E-15 92.0 11.4 80 296-377 3-83 (84)
303 PTZ00099 rab6; Provisional 99.2 8.8E-11 1.9E-15 106.4 12.0 113 146-285 27-143 (176)
304 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 4.5E-10 9.9E-15 105.2 16.5 147 87-251 1-162 (232)
305 PF04548 AIG1: AIG1 family; I 99.2 4E-10 8.6E-15 105.3 16.1 134 86-235 1-154 (212)
306 KOG0081 GTPase Rab27, small G 99.2 1.1E-11 2.4E-16 105.0 5.0 148 85-254 9-169 (219)
307 KOG0091 GTPase Rab39, small G 99.2 9.6E-11 2.1E-15 100.0 10.3 145 85-253 8-160 (213)
308 KOG0395 Ras-related GTPase [Ge 99.2 1.4E-10 3E-15 106.5 11.8 143 85-252 3-151 (196)
309 PF05049 IIGP: Interferon-indu 99.2 2.2E-10 4.7E-15 113.8 13.4 165 83-286 33-220 (376)
310 PRK09602 translation-associate 99.2 6E-10 1.3E-14 113.1 16.3 81 86-182 2-113 (396)
311 KOG1532 GTPase XAB1, interacts 99.2 1.3E-10 2.8E-15 107.7 9.4 167 83-252 17-250 (366)
312 KOG0097 GTPase Rab14, small G 99.2 4.8E-10 1E-14 93.2 11.7 145 84-253 10-160 (215)
313 TIGR02836 spore_IV_A stage IV 99.1 8.6E-10 1.9E-14 109.1 14.9 160 79-250 11-219 (492)
314 PF00350 Dynamin_N: Dynamin fa 99.1 1.3E-10 2.7E-15 104.4 8.5 65 147-211 100-168 (168)
315 COG4917 EutP Ethanolamine util 99.1 2.4E-10 5.2E-15 93.5 8.5 139 86-282 2-144 (148)
316 TIGR00750 lao LAO/AO transport 99.1 2E-09 4.4E-14 105.9 16.4 173 81-282 30-236 (300)
317 PF03308 ArgK: ArgK protein; 99.1 5E-10 1.1E-14 104.6 11.2 172 79-282 23-228 (266)
318 COG1703 ArgK Putative periplas 99.1 3.8E-09 8.2E-14 100.0 16.5 181 75-283 41-253 (323)
319 PTZ00258 GTP-binding protein; 99.1 3.9E-09 8.4E-14 106.1 17.0 86 81-182 17-126 (390)
320 TIGR00991 3a0901s02IAP34 GTP-b 99.1 3.8E-09 8.2E-14 102.3 16.3 119 82-215 35-167 (313)
321 TIGR00073 hypB hydrogenase acc 99.1 1.2E-09 2.6E-14 101.8 11.7 169 80-282 17-205 (207)
322 KOG0071 GTP-binding ADP-ribosy 99.1 4.4E-09 9.4E-14 87.7 13.4 156 85-283 17-177 (180)
323 KOG0410 Predicted GTP binding 99.0 1.7E-09 3.7E-14 102.7 11.1 149 83-283 176-340 (410)
324 KOG4252 GTP-binding protein [S 99.0 2.6E-10 5.6E-15 98.8 5.1 147 85-254 20-169 (246)
325 cd01342 Translation_Factor_II_ 99.0 4.8E-09 1E-13 81.6 11.1 82 294-377 1-82 (83)
326 PRK09601 GTP-binding protein Y 99.0 6.1E-09 1.3E-13 103.5 14.3 81 86-182 3-107 (364)
327 smart00053 DYNc Dynamin, GTPas 99.0 2.4E-09 5.2E-14 101.0 10.9 134 82-216 23-207 (240)
328 KOG0083 GTPase Rab26/Rab37, sm 99.0 1E-10 2.2E-15 96.3 1.1 140 90-253 2-147 (192)
329 PF03144 GTP_EFTU_D2: Elongati 99.0 3.3E-09 7.2E-14 81.5 9.5 70 308-377 1-74 (74)
330 PRK10463 hydrogenase nickel in 99.0 7.4E-09 1.6E-13 99.6 13.7 170 79-281 98-286 (290)
331 PF00735 Septin: Septin; Inte 99.0 7E-09 1.5E-13 100.6 13.6 143 85-236 4-176 (281)
332 COG5019 CDC3 Septin family pro 99.0 2.4E-08 5.3E-13 97.1 17.1 153 74-236 12-196 (373)
333 KOG0072 GTP-binding ADP-ribosy 99.0 7.7E-10 1.7E-14 92.6 5.2 158 84-283 17-178 (182)
334 KOG1547 Septin CDC10 and relat 98.9 6.1E-08 1.3E-12 88.4 16.5 155 72-236 33-218 (336)
335 TIGR00101 ureG urease accessor 98.9 8.4E-09 1.8E-13 95.2 11.2 102 147-283 91-195 (199)
336 KOG2486 Predicted GTPase [Gene 98.9 1.9E-09 4E-14 100.5 6.2 153 83-252 134-302 (320)
337 KOG0074 GTP-binding ADP-ribosy 98.9 7.6E-09 1.7E-13 86.4 8.1 146 82-252 14-165 (185)
338 KOG1490 GTP-binding protein CR 98.9 4.5E-09 9.7E-14 105.1 7.7 149 82-253 165-328 (620)
339 KOG2655 Septin family protein 98.9 6E-08 1.3E-12 95.2 15.3 153 74-236 10-192 (366)
340 KOG3883 Ras family small GTPas 98.9 5.2E-08 1.1E-12 82.6 12.7 161 85-288 9-179 (198)
341 TIGR00993 3a0901s04IAP86 chlor 98.8 9.7E-08 2.1E-12 99.9 16.4 116 85-215 118-250 (763)
342 cd03690 Tet_II Tet_II: This su 98.8 3.7E-08 8E-13 77.8 9.6 81 291-378 1-85 (85)
343 COG0378 HypB Ni2+-binding GTPa 98.8 2.8E-08 6.1E-13 88.6 9.6 164 85-282 13-199 (202)
344 PF14578 GTP_EFTU_D4: Elongati 98.8 1.3E-07 2.9E-12 72.4 11.7 78 292-377 3-80 (81)
345 KOG0077 Vesicle coat complex C 98.8 2.3E-08 4.9E-13 86.0 7.9 116 81-216 16-136 (193)
346 KOG0393 Ras-related small GTPa 98.8 1.5E-08 3.4E-13 91.4 7.2 147 84-252 3-165 (198)
347 cd04092 mtEFG2_II_like mtEFG2_ 98.8 7.1E-08 1.5E-12 75.9 9.8 78 295-378 2-83 (83)
348 cd04088 EFG_mtEFG_II EFG_mtEFG 98.7 1.2E-07 2.7E-12 74.5 9.9 78 295-378 2-83 (83)
349 cd03691 BipA_TypA_II BipA_TypA 98.7 1.7E-07 3.6E-12 74.3 10.7 80 294-377 1-85 (86)
350 cd01900 YchF YchF subfamily. 98.7 3.4E-08 7.3E-13 95.1 6.8 80 88-183 1-104 (274)
351 cd03699 lepA_II lepA_II: This 98.7 2.8E-07 6E-12 73.0 10.9 82 294-378 1-86 (86)
352 cd03689 RF3_II RF3_II: this su 98.7 2.3E-07 4.9E-12 73.2 9.8 69 304-378 12-84 (85)
353 KOG0448 Mitofusin 1 GTPase, in 98.7 2.3E-07 5E-12 96.4 12.3 168 83-253 107-313 (749)
354 COG0012 Predicted GTPase, prob 98.6 4.6E-07 1E-11 88.9 13.1 90 85-183 2-109 (372)
355 KOG3886 GTP-binding protein [S 98.6 3.8E-07 8.2E-12 82.9 11.5 146 85-250 4-163 (295)
356 KOG1486 GTP-binding protein DR 98.6 5E-07 1.1E-11 83.1 11.1 86 84-185 61-153 (364)
357 cd04091 mtEFG1_II_like mtEFG1_ 98.6 5.5E-07 1.2E-11 70.4 9.8 75 296-378 3-81 (81)
358 KOG1673 Ras GTPases [General f 98.5 8.6E-07 1.9E-11 75.4 10.1 146 84-252 19-172 (205)
359 KOG1534 Putative transcription 98.5 5.8E-07 1.3E-11 80.7 9.4 128 86-216 4-179 (273)
360 cd01859 MJ1464 MJ1464. This f 98.5 4.3E-07 9.3E-12 80.5 8.7 90 166-284 7-96 (156)
361 KOG1707 Predicted Ras related/ 98.4 1.4E-06 3.1E-11 89.1 10.2 113 83-215 7-129 (625)
362 cd01856 YlqF YlqF. Proteins o 98.4 7.7E-07 1.7E-11 80.2 7.5 99 155-284 2-101 (171)
363 cd01858 NGP_1 NGP-1. Autoanti 98.4 7.7E-07 1.7E-11 79.0 7.1 91 165-283 2-94 (157)
364 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.7E-07 1.4E-11 79.4 6.2 57 84-158 101-157 (157)
365 cd04178 Nucleostemin_like Nucl 98.4 5.9E-07 1.3E-11 80.9 5.7 57 84-158 116-172 (172)
366 TIGR01425 SRP54_euk signal rec 98.3 3.6E-06 7.7E-11 85.8 11.7 125 85-215 100-253 (429)
367 cd03115 SRP The signal recogni 98.3 5.2E-06 1.1E-10 74.9 11.5 124 87-215 2-153 (173)
368 COG3640 CooC CO dehydrogenase 98.3 1.7E-06 3.6E-11 79.5 8.0 65 147-214 133-198 (255)
369 KOG1954 Endocytosis/signaling 98.3 1.1E-05 2.4E-10 78.3 13.8 136 85-221 58-231 (532)
370 smart00275 G_alpha G protein a 98.3 1E-05 2.2E-10 81.0 14.2 76 138-214 174-264 (342)
371 cd01855 YqeH YqeH. YqeH is an 98.3 1.8E-06 3.9E-11 79.2 8.0 104 157-284 20-125 (190)
372 cd00066 G-alpha G protein alph 98.3 1.9E-05 4.2E-10 78.3 14.8 75 139-214 152-241 (317)
373 PF03193 DUF258: Protein of un 98.3 6.1E-07 1.3E-11 79.0 3.3 64 86-161 36-100 (161)
374 cd03700 eEF2_snRNP_like_II EF2 98.3 9.7E-06 2.1E-10 65.1 10.0 78 296-377 3-92 (93)
375 PRK10416 signal recognition pa 98.3 7.3E-06 1.6E-10 81.1 11.2 126 85-215 114-273 (318)
376 TIGR03596 GTPase_YlqF ribosome 98.2 3.2E-06 7E-11 82.3 8.4 99 155-284 4-103 (276)
377 TIGR00064 ftsY signal recognit 98.2 6.2E-06 1.3E-10 79.9 10.1 127 84-215 71-231 (272)
378 cd01849 YlqF_related_GTPase Yl 98.2 1.9E-06 4.2E-11 76.3 5.9 58 83-158 98-155 (155)
379 cd03114 ArgK-like The function 98.2 1.1E-05 2.4E-10 70.8 10.5 117 88-212 2-148 (148)
380 cd03110 Fer4_NifH_child This p 98.2 3E-05 6.5E-10 70.3 13.8 82 146-236 91-172 (179)
381 KOG1533 Predicted GTPase [Gene 98.2 8.3E-06 1.8E-10 74.6 9.7 126 87-215 4-177 (290)
382 PRK14722 flhF flagellar biosyn 98.2 8.5E-06 1.9E-10 81.7 10.8 128 85-215 137-295 (374)
383 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 5.1E-06 1.1E-10 72.3 7.8 80 163-253 3-84 (141)
384 PRK14974 cell division protein 98.2 6.9E-06 1.5E-10 81.5 9.5 125 85-215 140-293 (336)
385 cd01851 GBP Guanylate-binding 98.2 2.7E-05 5.9E-10 73.3 13.1 87 82-183 4-103 (224)
386 cd01849 YlqF_related_GTPase Yl 98.2 4.9E-06 1.1E-10 73.6 7.6 82 173-282 1-83 (155)
387 KOG0096 GTPase Ran/TC4/GSP1 (n 98.2 3.2E-06 6.8E-11 74.7 5.8 144 83-253 8-156 (216)
388 PF00448 SRP54: SRP54-type pro 98.2 2.2E-05 4.9E-10 72.2 11.7 125 86-215 2-154 (196)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 2.5E-06 5.5E-11 74.2 5.1 55 86-158 84-138 (141)
390 KOG1491 Predicted GTP-binding 98.2 2.5E-05 5.3E-10 75.4 11.9 90 78-183 13-126 (391)
391 TIGR00487 IF-2 translation ini 98.1 9.4E-05 2E-09 79.1 17.0 104 271-377 471-575 (587)
392 PRK09563 rbgA GTPase YlqF; Rev 98.1 6.8E-06 1.5E-10 80.5 7.5 99 155-284 7-106 (287)
393 cd01855 YqeH YqeH. YqeH is an 98.1 3.6E-06 7.9E-11 77.2 5.3 64 85-158 127-190 (190)
394 TIGR00157 ribosome small subun 98.1 9.1E-06 2E-10 77.6 8.2 86 167-280 32-119 (245)
395 PRK11889 flhF flagellar biosyn 98.1 1.6E-05 3.4E-10 79.5 9.0 126 85-215 241-391 (436)
396 PRK05306 infB translation init 98.0 0.00022 4.7E-09 78.4 18.4 104 271-377 673-777 (787)
397 PRK12288 GTPase RsgA; Reviewed 98.0 4.6E-06 9.9E-11 83.4 5.0 63 87-161 207-270 (347)
398 KOG4181 Uncharacterized conser 98.0 0.00016 3.4E-09 69.8 15.0 169 60-233 163-375 (491)
399 KOG3905 Dynein light intermedi 98.0 5.7E-05 1.2E-09 72.3 11.8 60 199-282 221-288 (473)
400 CHL00189 infB translation init 98.0 0.00028 6E-09 77.0 18.4 181 153-377 549-731 (742)
401 PF09173 eIF2_C: Initiation fa 98.0 5.7E-05 1.2E-09 59.1 9.3 78 386-477 2-88 (88)
402 COG1162 Predicted GTPases [Gen 98.0 6.1E-06 1.3E-10 79.4 4.7 64 86-161 165-229 (301)
403 cd04090 eEF2_II_snRNP Loc2 eEF 98.0 8.6E-05 1.9E-09 59.7 10.7 67 295-361 2-80 (94)
404 cd02036 MinD Bacterial cell di 98.0 4.8E-05 1E-09 68.7 10.4 119 91-215 6-128 (179)
405 TIGR00092 GTP-binding protein 98.0 1.3E-05 2.9E-10 79.9 7.1 82 86-183 3-109 (368)
406 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.1E-05 2.4E-10 79.0 6.5 57 84-158 120-176 (287)
407 cd03112 CobW_like The function 98.0 2.2E-05 4.9E-10 69.7 7.8 22 87-108 2-23 (158)
408 KOG4423 GTP-binding protein-li 98.0 1.6E-06 3.5E-11 76.1 0.5 145 85-252 25-180 (229)
409 PRK12727 flagellar biosynthesi 98.0 4.1E-05 8.8E-10 79.5 10.7 127 85-215 350-498 (559)
410 TIGR00157 ribosome small subun 98.0 9.8E-06 2.1E-10 77.4 5.7 63 86-161 121-184 (245)
411 COG1161 Predicted GTPases [Gen 98.0 8.6E-06 1.9E-10 80.8 5.5 56 84-157 131-186 (322)
412 TIGR03596 GTPase_YlqF ribosome 98.0 1.1E-05 2.3E-10 78.6 6.0 57 84-158 117-173 (276)
413 cd01856 YlqF YlqF. Proteins o 98.0 1.2E-05 2.6E-10 72.5 5.8 57 84-158 114-170 (171)
414 PRK12289 GTPase RsgA; Reviewed 98.0 2.7E-05 5.9E-10 78.0 8.9 83 169-280 87-171 (352)
415 PRK00771 signal recognition pa 98.0 5.6E-05 1.2E-09 77.7 11.1 126 84-215 94-246 (437)
416 PRK00098 GTPase RsgA; Reviewed 97.9 3.7E-05 7.9E-10 75.7 9.2 83 169-279 78-162 (298)
417 KOG1487 GTP-binding protein DR 97.9 1.5E-05 3.2E-10 73.9 5.7 85 85-185 59-150 (358)
418 TIGR03597 GTPase_YqeH ribosome 97.9 3.3E-05 7.1E-10 78.1 8.4 101 158-281 50-150 (360)
419 PRK12289 GTPase RsgA; Reviewed 97.9 1.3E-05 2.8E-10 80.3 5.0 63 87-161 174-237 (352)
420 PRK12726 flagellar biosynthesi 97.9 4.2E-05 9.1E-10 76.3 8.4 127 84-215 205-356 (407)
421 PRK10867 signal recognition pa 97.9 6.3E-05 1.4E-09 77.2 10.0 125 85-215 100-254 (433)
422 cd01859 MJ1464 MJ1464. This f 97.9 3E-05 6.4E-10 68.6 6.7 62 79-158 95-156 (156)
423 PF02492 cobW: CobW/HypB/UreG, 97.9 3.9E-05 8.5E-10 69.6 7.5 76 147-224 84-164 (178)
424 cd03111 CpaE_like This protein 97.9 0.00018 3.8E-09 59.3 10.6 100 88-210 2-106 (106)
425 PRK13796 GTPase YqeH; Provisio 97.9 2.3E-05 5E-10 79.3 6.2 62 85-159 160-221 (365)
426 KOG0082 G-protein alpha subuni 97.8 0.00056 1.2E-08 67.6 15.4 83 132-215 179-276 (354)
427 cd02038 FleN-like FleN is a me 97.8 0.00037 8.1E-09 60.4 12.0 105 90-214 5-110 (139)
428 TIGR03597 GTPase_YqeH ribosome 97.8 3.2E-05 7E-10 78.1 6.0 61 86-159 155-215 (360)
429 cd01854 YjeQ_engC YjeQ/EngC. 97.8 3.4E-05 7.3E-10 75.5 5.6 64 86-161 162-226 (287)
430 cd01854 YjeQ_engC YjeQ/EngC. 97.8 0.00011 2.4E-09 72.0 9.1 83 169-280 76-160 (287)
431 TIGR00959 ffh signal recogniti 97.7 0.00015 3.3E-09 74.4 9.8 125 85-215 99-253 (428)
432 PF00503 G-alpha: G-protein al 97.7 5.7E-05 1.2E-09 77.3 6.8 79 135-214 222-316 (389)
433 PRK14721 flhF flagellar biosyn 97.7 0.00017 3.7E-09 73.6 9.7 127 85-215 191-340 (420)
434 COG0532 InfB Translation initi 97.7 0.00024 5.1E-09 73.0 10.5 106 269-377 390-496 (509)
435 PF05783 DLIC: Dynein light in 97.7 0.00041 8.8E-09 71.9 12.3 61 199-283 195-263 (472)
436 PRK13796 GTPase YqeH; Provisio 97.6 0.0002 4.3E-09 72.5 9.2 99 160-282 58-157 (365)
437 PRK06731 flhF flagellar biosyn 97.6 0.00029 6.2E-09 67.9 9.5 127 84-215 74-225 (270)
438 PRK12724 flagellar biosynthesi 97.6 0.00014 3.1E-09 73.6 7.4 125 86-215 224-373 (432)
439 PRK12723 flagellar biosynthesi 97.6 0.00056 1.2E-08 69.3 11.7 128 85-215 174-326 (388)
440 PRK12288 GTPase RsgA; Reviewed 97.6 0.00039 8.4E-09 69.7 10.4 87 169-281 118-205 (347)
441 PRK01889 GTPase RsgA; Reviewed 97.6 0.00032 6.9E-09 70.8 9.5 82 169-279 110-192 (356)
442 KOG3887 Predicted small GTPase 97.6 0.00028 6.1E-09 64.9 8.1 151 86-251 28-188 (347)
443 COG1419 FlhF Flagellar GTP-bin 97.5 0.00076 1.6E-08 67.5 11.4 128 84-215 202-352 (407)
444 KOG3859 Septins (P-loop GTPase 97.5 0.0006 1.3E-08 64.1 9.9 147 74-235 31-209 (406)
445 KOG1424 Predicted GTP-binding 97.5 7.1E-05 1.5E-09 76.0 4.1 59 81-157 310-368 (562)
446 COG0523 Putative GTPases (G3E 97.5 0.0012 2.5E-08 65.4 12.5 90 147-248 84-184 (323)
447 PF09547 Spore_IV_A: Stage IV 97.5 0.004 8.7E-08 62.5 16.0 160 79-250 11-219 (492)
448 cd02037 MRP-like MRP (Multiple 97.5 0.0004 8.7E-09 62.3 8.4 118 91-214 6-134 (169)
449 KOG2485 Conserved ATP/GTP bind 97.5 0.00033 7.2E-09 67.1 7.9 66 82-157 140-205 (335)
450 COG0541 Ffh Signal recognition 97.5 0.0005 1.1E-08 69.0 9.3 129 83-215 98-253 (451)
451 KOG0447 Dynamin-like GTP bindi 97.5 0.0018 3.9E-08 66.1 13.0 130 85-215 308-493 (980)
452 KOG0780 Signal recognition par 97.5 0.00053 1.1E-08 67.4 8.9 124 86-214 102-253 (483)
453 PRK00098 GTPase RsgA; Reviewed 97.4 0.00015 3.2E-09 71.4 5.1 23 86-108 165-187 (298)
454 cd02042 ParA ParA and ParB of 97.4 0.0014 3E-08 53.6 9.8 82 88-194 2-84 (104)
455 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.0011 2.4E-08 52.7 9.2 75 88-190 2-77 (99)
456 PRK14723 flhF flagellar biosyn 97.4 0.00059 1.3E-08 74.2 9.1 126 86-215 186-337 (767)
457 PRK05703 flhF flagellar biosyn 97.4 0.0014 2.9E-08 67.7 11.4 125 86-215 222-371 (424)
458 PRK11537 putative GTP-binding 97.4 0.0013 2.9E-08 65.1 10.9 88 148-247 91-186 (318)
459 PRK06995 flhF flagellar biosyn 97.3 0.0012 2.5E-08 68.7 10.0 126 86-215 257-405 (484)
460 TIGR01969 minD_arch cell divis 97.3 0.0085 1.8E-07 57.2 15.2 66 147-214 108-173 (251)
461 PHA02518 ParA-like protein; Pr 97.3 0.0039 8.4E-08 57.8 12.5 67 146-214 75-146 (211)
462 cd03702 IF2_mtIF2_II This fami 97.3 0.0025 5.4E-08 51.1 9.4 75 295-377 2-78 (95)
463 TIGR02475 CobW cobalamin biosy 97.3 0.0033 7.2E-08 63.0 12.4 23 86-108 5-27 (341)
464 PF01656 CbiA: CobQ/CobB/MinD/ 97.3 0.00065 1.4E-08 62.1 6.6 70 147-218 94-165 (195)
465 PRK13695 putative NTPase; Prov 97.2 0.0016 3.6E-08 58.6 9.0 121 86-211 1-136 (174)
466 cd03703 aeIF5B_II aeIF5B_II: T 97.2 0.0034 7.4E-08 51.3 9.8 80 295-376 2-92 (110)
467 cd02035 ArsA ArsA ATPase funct 97.2 0.0018 3.9E-08 60.6 9.3 67 148-214 114-183 (217)
468 TIGR03348 VI_IcmF type VI secr 97.2 0.0017 3.8E-08 75.4 10.5 122 87-224 113-267 (1169)
469 TIGR01007 eps_fam capsular exo 97.1 0.0088 1.9E-07 55.3 12.8 68 147-215 127-194 (204)
470 COG1162 Predicted GTPases [Gen 97.1 0.003 6.5E-08 61.0 9.7 73 171-252 79-153 (301)
471 COG0552 FtsY Signal recognitio 97.1 0.0022 4.8E-08 62.5 8.8 124 84-214 138-297 (340)
472 KOG0781 Signal recognition par 97.0 0.001 2.2E-08 67.1 5.7 137 80-216 373-545 (587)
473 PRK13849 putative crown gall t 97.0 0.0067 1.5E-07 57.3 11.0 64 146-212 82-151 (231)
474 KOG2484 GTPase [General functi 97.0 0.00054 1.2E-08 67.7 3.5 57 83-157 250-306 (435)
475 cd04178 Nucleostemin_like Nucl 97.0 0.0013 2.9E-08 59.1 5.7 46 173-219 1-48 (172)
476 cd02117 NifH_like This family 97.0 0.0061 1.3E-07 56.8 10.4 68 146-214 115-188 (212)
477 CHL00175 minD septum-site dete 97.0 0.011 2.3E-07 57.8 12.5 66 147-214 126-191 (281)
478 TIGR00491 aIF-2 translation in 96.9 0.0051 1.1E-07 66.0 10.6 76 300-378 473-549 (590)
479 PRK08099 bifunctional DNA-bind 96.9 0.0093 2E-07 61.0 12.0 29 80-108 214-242 (399)
480 KOG2423 Nucleolar GTPase [Gene 96.9 0.00063 1.4E-08 66.9 3.3 37 72-108 294-330 (572)
481 KOG2743 Cobalamin synthesis pr 96.9 0.013 2.9E-07 55.9 11.6 27 81-107 53-79 (391)
482 PRK13185 chlL protochlorophyll 96.9 0.028 6.1E-07 54.4 14.4 66 146-212 116-185 (270)
483 COG1618 Predicted nucleotide k 96.8 0.023 5.1E-07 49.6 11.4 32 83-114 3-34 (179)
484 cd02032 Bchl_like This family 96.8 0.014 3E-07 56.5 11.4 66 147-213 115-184 (267)
485 PRK14491 putative bifunctional 96.7 0.12 2.6E-06 55.9 18.9 32 83-114 8-39 (597)
486 PRK04004 translation initiatio 96.7 0.0095 2.1E-07 64.1 10.4 76 300-378 475-551 (586)
487 TIGR01281 DPOR_bchL light-inde 96.7 0.045 9.8E-07 52.9 14.1 67 146-213 114-184 (268)
488 KOG0099 G protein subunit Galp 96.6 0.013 2.8E-07 54.9 9.2 75 140-215 194-283 (379)
489 PRK10751 molybdopterin-guanine 96.6 0.0096 2.1E-07 53.4 7.8 27 84-110 5-31 (173)
490 cd03701 IF2_IF5B_II IF2_IF5B_I 96.5 0.017 3.6E-07 46.5 8.3 63 295-361 2-65 (95)
491 cd02033 BchX Chlorophyllide re 96.5 0.15 3.3E-06 50.7 16.4 66 147-214 147-220 (329)
492 COG1763 MobB Molybdopterin-gua 96.4 0.02 4.3E-07 50.6 8.7 28 86-113 3-30 (161)
493 PRK01889 GTPase RsgA; Reviewed 96.4 0.0031 6.7E-08 63.6 4.1 23 86-108 196-218 (356)
494 CHL00072 chlL photochlorophyll 96.4 0.023 4.9E-07 55.7 9.9 65 147-212 115-183 (290)
495 KOG1144 Translation initiation 96.4 0.051 1.1E-06 57.9 12.7 61 301-364 945-1007(1064)
496 cd00550 ArsA_ATPase Oxyanion-t 96.3 0.098 2.1E-06 50.2 14.0 70 146-215 123-203 (254)
497 COG1341 Predicted GTPase or GT 96.3 0.019 4.1E-07 57.5 9.1 33 82-114 70-102 (398)
498 PF06858 NOG1: Nucleolar GTP-b 96.3 0.016 3.5E-07 41.3 6.2 47 164-212 5-58 (58)
499 TIGR03371 cellulose_yhjQ cellu 96.3 0.18 3.9E-06 47.8 15.8 65 148-215 115-182 (246)
500 cd02040 NifH NifH gene encodes 96.3 0.03 6.6E-07 54.1 10.5 28 87-114 3-30 (270)
No 1
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.9e-79 Score=630.65 Aligned_cols=418 Identities=94% Similarity=1.380 Sum_probs=382.2
Q ss_pred echhhHHHHHhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee
Q 011581 65 TRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE 144 (482)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 144 (482)
.+.+....+++.+++..+++++||+++||+|+|||||+++|++....++......+..+|..++|+++|+|++.....|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~ 140 (478)
T PLN03126 61 RRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE 140 (478)
T ss_pred ccchhhhHHHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe
Confidence 34555667778888888999999999999999999999999987666555444455678999999999999999999999
Q ss_pred cCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHH
Q 011581 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVE 224 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~ 224 (482)
++++.++|||||||++|.++++.++..+|++++|||+.+|+.+||++|+.++..+++|++|+++||||++++++.++.++
T Consensus 141 ~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~ 220 (478)
T PLN03126 141 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVE 220 (478)
T ss_pred cCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999998777788888
Q ss_pred HHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEee
Q 011581 225 LEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSI 304 (482)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v 304 (482)
+++.++++.++|+..++|++|+||++|+|.+..++....+..+||+++.+|++.|.+..+.|.++.+.||+|+|+++|++
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v 300 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSI 300 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEe
Confidence 89999999999977789999999999998776555556666799999999999999987778888889999999999999
Q ss_pred CCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCC
Q 011581 305 TGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITP 384 (482)
Q Consensus 305 ~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~ 384 (482)
+|+|+|++|+|++|.|++||.|.++|.+++..++|++|+.++.+++.|.|||+|+|+|++++..++++||||++++++.+
T Consensus 301 ~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~ 380 (478)
T PLN03126 301 TGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITP 380 (478)
T ss_pred CCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCc
Confidence 99999999999999999999999999876667999999999999999999999999999999999999999999887778
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEE
Q 011581 385 HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFA 464 (482)
Q Consensus 385 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfi 464 (482)
++.|+|++.||++++++++.+|..||++++|+|+.+++|+|..|..+.+++++.+++||.+.|+|++.+|+|+++++||+
T Consensus 381 ~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~Rfi 460 (478)
T PLN03126 381 HTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFA 460 (478)
T ss_pred eEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEE
Confidence 89999999999987655667999999999999999999999999876667788999999999999999999999999999
Q ss_pred EeeCCcEEEEEEEeeecC
Q 011581 465 IREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 465 lr~~~~tvg~G~v~~v~~ 482 (482)
||++|+|+|+|+|+++++
T Consensus 461 lR~~~~Tva~G~V~~v~~ 478 (478)
T PLN03126 461 IREGGKTVGAGVIQSIIE 478 (478)
T ss_pred EecCCceEEEEEEEEecC
Confidence 999999999999999875
No 2
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-80 Score=568.07 Aligned_cols=393 Identities=75% Similarity=1.176 Sum_probs=373.9
Q ss_pred hhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEe
Q 011581 75 ARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 154 (482)
Q Consensus 75 ~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 154 (482)
+++++.+.+++.||+.+||+|+|||||..+|+..+...+...+..+...|..++|+++|+||+.++..|++.+++|..+|
T Consensus 2 ak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVD 81 (394)
T COG0050 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVD 81 (394)
T ss_pred chhhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEecc
Confidence 35678899999999999999999999999999999988888888888899999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 155 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 155 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+|||.||.+||+.++.++|++||||.|.+|..+||+||+.+++..|+|.+++++||+|+++++++.+.++.+++++|..+
T Consensus 82 cPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 82 CPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred CCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEE
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~ 314 (482)
+|++++.|++..||+... .+...|.+.+.+|++++++++|.|.++.++||+|+|.|+|++.|+|+|++||
T Consensus 162 ~f~gd~~Pii~gSal~al----------e~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGr 231 (394)
T COG0050 162 GFPGDDTPIIRGSALKAL----------EGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGR 231 (394)
T ss_pred CCCCCCcceeechhhhhh----------cCCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEE
Confidence 999999999999998765 3455799999999999999999999999999999999999999999999999
Q ss_pred EEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEE
Q 011581 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYV 394 (482)
Q Consensus 315 v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~ 394 (482)
|++|+|++|+.+.+.+.....+..|.+++++++..+++.|||+|++.|+++++.++.||+||+.|+++.+.+.|+|++++
T Consensus 232 VeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyv 311 (394)
T COG0050 232 VERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYV 311 (394)
T ss_pred EeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEE
Confidence 99999999999999987666688999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEE
Q 011581 395 LKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGA 474 (482)
Q Consensus 395 l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~ 474 (482)
|.+.++++|+|+..||+|+||+.+..+++.+..-. ...++++||.+.+.++|.+|+++|+|.||.+|++|+|+|.
T Consensus 312 L~keeggrhtpff~~yrpqfyfRttDVtg~i~l~e-----g~emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvga 386 (394)
T COG0050 312 LSKEEGGRHTPFFHGYRPQFYFRTTDVTGAITLPE-----GVEMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGA 386 (394)
T ss_pred EecccCCCCCCcccCccceeEEEeeeeeeeEeccC-----CcceecCCCceEEEEEEeeeeecCCCCEEEEEeCCeeeee
Confidence 99999999999999999999999999999665433 3578999999999999999999999999999999999999
Q ss_pred EEEeeecC
Q 011581 475 GVIQSIIE 482 (482)
Q Consensus 475 G~v~~v~~ 482 (482)
|.|.+|++
T Consensus 387 GvV~~i~~ 394 (394)
T COG0050 387 GVVTKIIE 394 (394)
T ss_pred eEEeeecC
Confidence 99999874
No 3
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-79 Score=573.40 Aligned_cols=394 Identities=64% Similarity=1.059 Sum_probs=372.0
Q ss_pred hhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeC
Q 011581 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 155 (482)
Q Consensus 76 ~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDt 155 (482)
...+.+++++.||+.+||+|+|||||..+++..+.+.|...+..+...|+.++|+.|||||+.++..|++..++|.-+|+
T Consensus 45 ~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DC 124 (449)
T KOG0460|consen 45 KAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDC 124 (449)
T ss_pred ccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|||.||++||+.+..+.|++||||.|++|..+||+||+.+++..|+++++|++||.|++++++..+.++-+++++|..++
T Consensus 125 PGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 125 PGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred CchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEE
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRV 315 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v 315 (482)
|+++++|+|..||+...+. .++.+ -.+.|..|++++++++|.|.|+.++||.|+|+++|.++|+|+|++|++
T Consensus 205 f~Gd~~PvI~GSAL~ALeg--~~pei------g~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrl 276 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEG--RQPEI------GLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRL 276 (449)
T ss_pred CCCCCCCeeecchhhhhcC--CCccc------cHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEE
Confidence 9999999999999876521 11221 123588999999999999999999999999999999999999999999
Q ss_pred EeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEe
Q 011581 316 ERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVL 395 (482)
Q Consensus 316 ~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l 395 (482)
++|+|++||++.+.+.++..+.+|.+|+++++.+++|.|||++++.++|++.++++||||++.|++..+.+.|+|++++|
T Consensus 277 ERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiL 356 (449)
T KOG0460|consen 277 ERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYIL 356 (449)
T ss_pred eecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEE
Confidence 99999999999999988878899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEE
Q 011581 396 KKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAG 475 (482)
Q Consensus 396 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G 475 (482)
++.|+++++|+..+|++++|+.++.++++|..... .+++++||.+.+++.|.+|+++|+|+||.||++|+|||.|
T Consensus 357 sk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~~-----~~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtG 431 (449)
T KOG0460|consen 357 SKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPPE-----KEMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTG 431 (449)
T ss_pred EhhhCCCccchhhccchhheeeecccceEEEccCh-----HhcccCCCCeEEEEEEecccccCCCceeeEccCCeeeeee
Confidence 99999999999999999999999999999987742 4789999999999999999999999999999999999999
Q ss_pred EEeeecC
Q 011581 476 VIQSIIE 482 (482)
Q Consensus 476 ~v~~v~~ 482 (482)
+|+++++
T Consensus 432 vvt~~l~ 438 (449)
T KOG0460|consen 432 VVTDTLP 438 (449)
T ss_pred eEeeeee
Confidence 9998874
No 4
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-78 Score=582.61 Aligned_cols=388 Identities=36% Similarity=0.562 Sum_probs=356.2
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhH---------------HhcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMAL---------------ASLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
..++++|++++||+|||||||+++|+... ...|+.++..+|.+|++++||+||+|++.+...|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35789999999999999999999998542 347888899999999999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-------ChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-H
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-E 217 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-------~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~ 217 (482)
+.+.++|+|+|||++|.++|+.++.+||++||||||..+ ..+||+||+.+++.+|+.++||++||||.++| +
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999998 78999999999999999999999999999985 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEE
Q 011581 218 ELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLA 297 (482)
Q Consensus 218 ~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~ 297 (482)
+++++++.++..+++.+||+.++++|+|+||+.|.|..... ...+||+| ++|+++|+. +..|++..++||+++
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-----~~~pWY~G-pTLleaLd~-~~~p~~~~d~Plr~p 235 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-----ENMPWYKG-PTLLEALDQ-LEPPERPLDKPLRLP 235 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-----cCCcCccC-ChHHHHHhc-cCCCCCCCCCCeEeE
Confidence 68999999999999999999889999999999999654332 35699998 999999994 667888899999999
Q ss_pred EEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEe
Q 011581 298 VEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 298 I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
|+++|.+.+.|+|..|||++|.|++||+|++.|.+. ..+|++|++++++.+.|.+||+|+++++++...||++|||++
T Consensus 236 I~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~--~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~ 313 (428)
T COG5256 236 IQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGV--VGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIG 313 (428)
T ss_pred eeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcc--eEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEec
Confidence 999999999999999999999999999999999874 789999999999999999999999999999999999999999
Q ss_pred CCCCCCC-CceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccc--------cccccccCCCCEEEEE
Q 011581 378 KPGTITP-HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK--------DEESKMVMPGDRIKMV 448 (482)
Q Consensus 378 ~~~~~~~-~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~--------~~~~~~~~~g~~~~v~ 448 (482)
+++++.. +..|.|++.+|.++ ..|.+||++++|+|+.+++|++.+|..+. ++++.+++.|+.+.|.
T Consensus 314 ~~~n~~t~s~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~ 388 (428)
T COG5256 314 HSDNPPTVSPEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVK 388 (428)
T ss_pred cCCCCcccccceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEE
Confidence 9987544 57999999999986 68999999999999999999998776443 3467899999999999
Q ss_pred EEeCceEeecc------CCeEEEeeCCcEEEEEEEeeecC
Q 011581 449 VELIMPVACEQ------GMRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 449 ~~~~~p~~~~~------~~rfilr~~~~tvg~G~v~~v~~ 482 (482)
+++.+|+|++. .+||+|||.|+|||+|+|.++.+
T Consensus 389 i~~~kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 389 IEPEKPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred EEecCceEeeecccCCccceEEEEeCCCeEEeEEEEeccC
Confidence 99999999985 37999999999999999998864
No 5
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=3.1e-74 Score=587.99 Aligned_cols=407 Identities=81% Similarity=1.270 Sum_probs=366.6
Q ss_pred hhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeC
Q 011581 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 155 (482)
Q Consensus 76 ~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDt 155 (482)
++.+..+++++||+++||+|+|||||+|+|++............+..+|..++|+++|+|++.....|++++..++|+||
T Consensus 3 ~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDt 82 (409)
T CHL00071 3 REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDC 82 (409)
T ss_pred hhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEEC
Confidence 45566788999999999999999999999998755444333334457899999999999999999999989999999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|||.+|.++++.++..+|++++|||+..|+..|+++|+.++..+++|++|+++||||++++++.++.+++++.++|+.++
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred CChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999888999999999877778888889999999999
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEE
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRV 315 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v 315 (482)
++.+.+|++++||++|+|.+...+....+..+||+++++|+++|.+.+|.|.++.+.||+|+|+++|+++|.|+|++|+|
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V 242 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRI 242 (409)
T ss_pred CCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEE
Confidence 87667999999999999877655544455669999999999999998888888888999999999999999999999999
Q ss_pred EeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEe
Q 011581 316 ERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVL 395 (482)
Q Consensus 316 ~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l 395 (482)
++|+|++||.|.+.|.++...++|++|+.++++++.|.|||+|+++|++++..++++||||++++.+.+++.|+|+|.+|
T Consensus 243 ~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l 322 (409)
T CHL00071 243 ERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQVYIL 322 (409)
T ss_pred ecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEEEEEE
Confidence 99999999999988754335789999999999999999999999999999889999999999988777899999999999
Q ss_pred ecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEE
Q 011581 396 KKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAG 475 (482)
Q Consensus 396 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G 475 (482)
+++++++..+|..||++++|+|+.+++|+|..|.....+++..+++||.+.|+|++.+|+|+++++||+||++|+|+|+|
T Consensus 323 ~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~~~tig~G 402 (409)
T CHL00071 323 TKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRTVGAG 402 (409)
T ss_pred ecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecCCeEEEEE
Confidence 98644445689999999999999999999999976544567899999999999999999999999999999999999999
Q ss_pred EEeeecC
Q 011581 476 VIQSIIE 482 (482)
Q Consensus 476 ~v~~v~~ 482 (482)
+|+++++
T Consensus 403 ~V~~~~~ 409 (409)
T CHL00071 403 VVSKILK 409 (409)
T ss_pred EEEEecC
Confidence 9999875
No 6
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-73 Score=580.17 Aligned_cols=392 Identities=72% Similarity=1.172 Sum_probs=357.8
Q ss_pred hhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeC
Q 011581 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 155 (482)
Q Consensus 76 ~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDt 155 (482)
.+++++.++++||+++||+|+|||||+++|++.....|...+..++.+|..++|+++|+|++.....|+.+++.++||||
T Consensus 3 ~~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDt 82 (394)
T PRK12736 3 KEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDC 82 (394)
T ss_pred hhhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEEC
Confidence 45677789999999999999999999999998766667666665668999999999999999999999888899999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|||++|..+++.++..+|++++|||+.+|+.+|+++|+.++..+++|++|+++||||+++++++++.+.+++.++++.++
T Consensus 83 PGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 83 PGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999888999999998766777777779999999998
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEE
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRV 315 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v 315 (482)
+....+|++++||++|.+ +...||.++++|++.|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|
T Consensus 163 ~~~~~~~ii~vSa~~g~~----------~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v 232 (394)
T PRK12736 163 FPGDDIPVIRGSALKALE----------GDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRV 232 (394)
T ss_pred CCcCCccEEEeecccccc----------CCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEE
Confidence 876778999999999862 3357999999999999999998888889999999999999999999999999
Q ss_pred EeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEe
Q 011581 316 ERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVL 395 (482)
Q Consensus 316 ~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l 395 (482)
++|+|++||.|+++|.+.+..++|++|+.++++++.|.|||+|+++|++++..++++|||||+++++.+++.|+|++.+|
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl 312 (394)
T PRK12736 233 ERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYIL 312 (394)
T ss_pred eecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEE
Confidence 99999999999999874445789999999999999999999999999999989999999999988777889999999999
Q ss_pred ecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEE
Q 011581 396 KKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAG 475 (482)
Q Consensus 396 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G 475 (482)
+++++++..+|..||++++|+|+.++.|+|... +++.++++|+.+.|+|+|++|+|+++++||+||++|+|+|+|
T Consensus 313 ~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-----~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G 387 (394)
T PRK12736 313 TKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELP-----EGTEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAG 387 (394)
T ss_pred ecccCCCCCcccCCceEEEEEccCeEEEEEEec-----CCcceeCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEE
Confidence 986555567899999999999999999999653 245789999999999999999999999999999999999999
Q ss_pred EEeeecC
Q 011581 476 VIQSIIE 482 (482)
Q Consensus 476 ~v~~v~~ 482 (482)
+|+++++
T Consensus 388 ~V~~v~~ 394 (394)
T PRK12736 388 TVTEILD 394 (394)
T ss_pred EEEEeeC
Confidence 9999874
No 7
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.8e-73 Score=578.58 Aligned_cols=395 Identities=74% Similarity=1.169 Sum_probs=358.8
Q ss_pred hhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEe
Q 011581 75 ARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 154 (482)
Q Consensus 75 ~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liD 154 (482)
+.+++.+.++++||+++||+|+|||||+++|++.....|...+...+.+|..++|+++|+|++.....+++++..++|+|
T Consensus 2 ~~~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iD 81 (396)
T PRK12735 2 AKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVD 81 (396)
T ss_pred chhhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEE
Confidence 35678889999999999999999999999999877777766665556899999999999999999999988889999999
Q ss_pred CCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 155 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 155 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
||||++|.+++..++..+|++++|+|+.+|+..|+++|+.++..+++|++|+++||||+.+.++.++.++.++.++++.+
T Consensus 82 tPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 82 CPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred CCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999977678999999876667777777899999999
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEE
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGR 314 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~ 314 (482)
++.+.++|++++||++|+|. ....+||.++++|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~--------~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~ 233 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEG--------DDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGR 233 (396)
T ss_pred CCCcCceeEEecchhccccC--------CCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEE
Confidence 88766799999999999852 2235799999999999999988888888999999999999999999999999
Q ss_pred EEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEE
Q 011581 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYV 394 (482)
Q Consensus 315 v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~ 394 (482)
|.+|+|++||.|.++|.+.+..++|++|++++++++.|.|||+|+++|++++..++++|+|||+++++.+++.|+|+|.+
T Consensus 234 v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~v 313 (396)
T PRK12735 234 VERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYV 313 (396)
T ss_pred EEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEE
Confidence 99999999999999997545689999999999999999999999999999999999999999998877788999999999
Q ss_pred eecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEE
Q 011581 395 LKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGA 474 (482)
Q Consensus 395 l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~ 474 (482)
|++++++++.+|..||++++|+|+.+++|+|... +++.++++|+.+.|+|+|++|+|+++++||+||++|+|+|+
T Consensus 314 l~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~~-----~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~ 388 (396)
T PRK12735 314 LSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELP-----EGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGA 388 (396)
T ss_pred EecccCCCCCcccCCCeeEEEeccceEEEEEEcc-----CCCceeCCCCEEEEEEEECceEEEeECCEEEEEcCCcEEEE
Confidence 9986544456899999999999999999999643 24678999999999999999999999999999999999999
Q ss_pred EEEeeecC
Q 011581 475 GVIQSIIE 482 (482)
Q Consensus 475 G~v~~v~~ 482 (482)
|+|+++++
T Consensus 389 G~V~~v~~ 396 (396)
T PRK12735 389 GVVAKIIE 396 (396)
T ss_pred EEEEEecC
Confidence 99999874
No 8
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4.4e-73 Score=577.70 Aligned_cols=392 Identities=77% Similarity=1.205 Sum_probs=358.3
Q ss_pred hhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeC
Q 011581 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 155 (482)
Q Consensus 76 ~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDt 155 (482)
++.+..++++++|+++||+|+|||||+++|++.....|...+..++.+|..++|+++|+|++.....++.+++.++||||
T Consensus 3 ~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDt 82 (394)
T TIGR00485 3 KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDC 82 (394)
T ss_pred hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEEC
Confidence 45677789999999999999999999999998877777777766778999999999999999999999888899999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|||++|..+++.++..+|++++|+|+.+|+..|+++|+.++..+++|++|+++||||+.++++.++.++++++++++.++
T Consensus 83 pGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 83 PGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred CchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999777899999999877777777778999999998
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEE
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRV 315 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v 315 (482)
+...++|++++||++|.+ +..+||+++.+|+++|.+.+|.|.++.++||+|+|+++|+++|.|+|++|+|
T Consensus 163 ~~~~~~~ii~vSa~~g~~----------g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v 232 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALE----------GDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRV 232 (394)
T ss_pred CCccCccEEECccccccc----------cCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEE
Confidence 876679999999998862 3457999999999999998888888889999999999999999999999999
Q ss_pred EeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEe
Q 011581 316 ERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVL 395 (482)
Q Consensus 316 ~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l 395 (482)
.+|.|++||.|.+.|.+++..++|++|+.++.+++.|.|||+|+++|++++..++++||||++++.+.+++.|+|+|.||
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl 312 (394)
T TIGR00485 233 ERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVL 312 (394)
T ss_pred EeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEE
Confidence 99999999999999864345789999999999999999999999999999889999999999987777889999999999
Q ss_pred ecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEE
Q 011581 396 KKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAG 475 (482)
Q Consensus 396 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G 475 (482)
++++++++.+|..||++++|+|+.++.|+|..+. ++.++++|+++.|+|++++|+|+++++||+||++|+|+|+|
T Consensus 313 ~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~~~-----~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~g~tv~~G 387 (394)
T TIGR00485 313 KKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPE-----GVEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAG 387 (394)
T ss_pred ecCCCCCCCccccCceEEEEEecceEEEEEEecC-----CcceeCCCCEEEEEEEECceEEEeECCEEEEecCCcEEEEE
Confidence 9876566679999999999999999999998543 46789999999999999999999999999999999999999
Q ss_pred EEeeecC
Q 011581 476 VIQSIIE 482 (482)
Q Consensus 476 ~v~~v~~ 482 (482)
+|++|++
T Consensus 388 ~V~~v~~ 394 (394)
T TIGR00485 388 VVSKIIE 394 (394)
T ss_pred EEEEecC
Confidence 9999874
No 9
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.3e-72 Score=573.29 Aligned_cols=394 Identities=74% Similarity=1.177 Sum_probs=356.7
Q ss_pred hhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeC
Q 011581 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC 155 (482)
Q Consensus 76 ~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDt 155 (482)
.+.+.+.++++||+++||+|+|||||+++|++.....|......++.+|..++|+++|+|++.....|++++..++|+||
T Consensus 3 ~~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDt 82 (396)
T PRK00049 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDC 82 (396)
T ss_pred hhhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEEC
Confidence 45677789999999999999999999999998776666655555557899999999999999999999888899999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|||.+|..++..++..+|++++|||+.+|+..|+++|+.++..+++|.+|+++||+|+++.++.++.+..+++++++.++
T Consensus 83 PG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 83 PGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred CCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999666789999998766677777778999999999
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEE
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRV 315 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v 315 (482)
++..++|++++||++|.| .....+||+|+++|+++|.+.++.|.+..++||+|+|+++|+++|+|+|++|+|
T Consensus 163 ~~~~~~~iv~iSa~~g~~--------~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v 234 (396)
T PRK00049 163 FPGDDTPIIRGSALKALE--------GDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRV 234 (396)
T ss_pred CCccCCcEEEeecccccC--------CCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEE
Confidence 876789999999999874 123468999999999999998888888889999999999999999999999999
Q ss_pred EeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEe
Q 011581 316 ERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVL 395 (482)
Q Consensus 316 ~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l 395 (482)
.+|+|++||.|.++|.+.+..++|++|+.++.+++.|.|||+|+++|++++..++++|+|||+++.+.+++.|+|+|.+|
T Consensus 235 ~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl 314 (396)
T PRK00049 235 ERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVL 314 (396)
T ss_pred eeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEE
Confidence 99999999999999874345799999999999999999999999999999999999999999987777789999999999
Q ss_pred ecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEE
Q 011581 396 KKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAG 475 (482)
Q Consensus 396 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G 475 (482)
+++++++..+|..||++++|+|+.+++|+| .+. +++.++++||++.|+|++.+|+|+++++||+||++|+|+|+|
T Consensus 315 ~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i-~l~----~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~g~t~~~G 389 (396)
T PRK00049 315 SKEEGGRHTPFFNGYRPQFYFRTTDVTGVI-ELP----EGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIREGGRTVGAG 389 (396)
T ss_pred ecCcCCCCCcccCCCEEEEEEecCcEEEEE-Eec----CCCcccCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEE
Confidence 986544557999999999999999999999 332 357889999999999999999999999999999999999999
Q ss_pred EEeeecC
Q 011581 476 VIQSIIE 482 (482)
Q Consensus 476 ~v~~v~~ 482 (482)
+|+++++
T Consensus 390 ~V~~v~~ 396 (396)
T PRK00049 390 VVTKIIE 396 (396)
T ss_pred EEEEecC
Confidence 9999875
No 10
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.2e-72 Score=576.61 Aligned_cols=387 Identities=33% Similarity=0.498 Sum_probs=345.7
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHH---------------hcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALA---------------SLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
.+++++||+++||+|+|||||+++|+.... ..+...+.++|.+|..++|+++|+|++.....|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 468899999999999999999999986432 23344566678999999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh-------HHHHHHHHHHHHcCCCcEEEEEecCCCCC--h
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD--D 216 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~t~e~l~~~~~~~ip~iivviNK~D~~~--~ 216 (482)
+++.++|+|||||++|.++|..+++.+|++|+|||+.+|.. .||++|+.++..+++|++|+++||||+.+ +
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999999843 79999999999999998999999999873 2
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCee
Q 011581 217 -EELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295 (482)
Q Consensus 217 -~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~ 295 (482)
.++++.+.++++.++++.+++..+++|+|+||++|+|.... ....+||+| +.|+++|++ ++.|.+..+.||+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~-----~~~~~Wy~g-~tLl~~l~~-i~~p~~~~~~plr 235 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIER-----STNLDWYKG-PTLLEALDQ-INEPKRPSDKPLR 235 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccc-----ccCCcccch-HHHHHHHhh-cCCCccccCCCcE
Confidence 45677778899999999999877899999999999865432 123589998 789999987 5567788899999
Q ss_pred EEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeE
Q 011581 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMV 375 (482)
Q Consensus 296 ~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 375 (482)
|+|+++|+++|+|+|+.|+|++|.|++||.|.++|.+. .++|++|+.++.+++.|.|||+|+++|++++..+++||||
T Consensus 236 ~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~--~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 236 LPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGL--TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCC--EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 99999999999999999999999999999999999865 7899999999999999999999999999998899999999
Q ss_pred EeCCC-C-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEE
Q 011581 376 LAKPG-T-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRI 445 (482)
Q Consensus 376 l~~~~-~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~ 445 (482)
|+++. . +..+++|+|+|.||+++ .+|..||++++|+++.+++|+|.+|..+.+ ++|+++++||.+
T Consensus 314 l~~~~~~p~~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a 388 (447)
T PLN00043 314 ASNSKDDPAKEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG 388 (447)
T ss_pred EccCCCCCCccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEE
Confidence 99873 3 35689999999999986 589999999999999999999998865433 346799999999
Q ss_pred EEEEEeCceEeecc------CCeEEEeeCCcEEEEEEEeeec
Q 011581 446 KMVVELIMPVACEQ------GMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 446 ~v~~~~~~p~~~~~------~~rfilr~~~~tvg~G~v~~v~ 481 (482)
.|+|++.+|+|+|+ ++||+||++|+|+|+|+|++|.
T Consensus 389 ~v~i~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~ 430 (447)
T PLN00043 389 FVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVE 430 (447)
T ss_pred EEEEEECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEe
Confidence 99999999999997 6999999999999999999875
No 11
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.7e-71 Score=569.29 Aligned_cols=396 Identities=67% Similarity=1.063 Sum_probs=350.8
Q ss_pred HhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEE
Q 011581 74 AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHV 153 (482)
Q Consensus 74 ~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~li 153 (482)
+..++..+.++++||+++||+|||||||+++|++.....|......+..+|..++|+++|+|++.....|++++++++|+
T Consensus 50 ~~~~~~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~i 129 (447)
T PLN03127 50 RSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHV 129 (447)
T ss_pred HHHhhhhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEE
Confidence 45566777899999999999999999999999877655565443333468999999999999999999999999999999
Q ss_pred eCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 154 DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 154 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
|||||.+|..+++.++..+|+++||||+.+|+.+|+++|+.++..+++|++|+++||||++++++.++.++++++++++.
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997788999999998666777777788899988
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEE
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G 313 (482)
++++..++|++++|++.+.+. .+ .. ..|. ++.+|+++|.+.+|.|.+..++||+|+|+++|+++|+|+|++|
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g---~n-~~---~~~~-~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG 281 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQG---TN-DE---IGKN-AILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATG 281 (447)
T ss_pred hCCCCCcceEEEeccceeecC---CC-cc---cccc-hHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEE
Confidence 888767899999998755311 00 00 1222 5789999999999888888899999999999999999999999
Q ss_pred EEEeeeeecCCEEEEecCCc--cceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEE
Q 011581 314 RVERGTIKVGETVDLVGLKE--TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAI 391 (482)
Q Consensus 314 ~v~sG~l~~g~~v~i~p~~~--~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~ 391 (482)
+|++|.|++||.|.++|.+. +..++|++|+.++++++.|.|||+|+++|++++..++++|||||+++.+.++++|+|+
T Consensus 282 ~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~ 361 (447)
T PLN03127 282 RVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAE 361 (447)
T ss_pred EEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEE
Confidence 99999999999999997633 4578999999999999999999999999999999999999999998777789999999
Q ss_pred EEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcE
Q 011581 392 VYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKT 471 (482)
Q Consensus 392 v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~t 471 (482)
|.+|++++++++.+|..||++++|+|+.+++|+|... +++.++++||.+.|+|++.+|+|+++++||+||++|+|
T Consensus 362 i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~~-----~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~~g~T 436 (447)
T PLN03127 362 IYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELP-----EGVKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRT 436 (447)
T ss_pred EEEEcccccccCcccccCceeEEEeeecceeEEEEec-----cCccccCCCCEEEEEEEECceEEEeeCCEEEEEeCCcE
Confidence 9999987666667999999999999999999999654 25678999999999999999999999999999999999
Q ss_pred EEEEEEeeecC
Q 011581 472 VGAGVIQSIIE 482 (482)
Q Consensus 472 vg~G~v~~v~~ 482 (482)
+|+|+|++|++
T Consensus 437 vg~G~V~~v~~ 447 (447)
T PLN03127 437 VGAGVVSKVLS 447 (447)
T ss_pred EEEEEEEEecC
Confidence 99999999874
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.1e-71 Score=569.86 Aligned_cols=387 Identities=35% Similarity=0.526 Sum_probs=346.3
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHH---------------hcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALA---------------SLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
.+++++||+++||+|+|||||+++|+.... ..|++.+.++|.+|..++|+++|+|++.....+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 357889999999999999999999986422 34566677778999999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh-------HHHHHHHHHHHHcCCCcEEEEEecCCC--CC-
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 215 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~t~e~l~~~~~~~ip~iivviNK~D~--~~- 215 (482)
+++.++|||||||.+|.++++.++..+|++|+|||+.+|++ .||++|+.++..+|+|++||++||||+ ++
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 99999999999999999999999999999999999999974 899999999999999999999999994 44
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCee
Q 011581 216 DEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295 (482)
Q Consensus 216 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~ 295 (482)
.++.++.+.+++.++++.+++...++|++|+|+++|.|.... ....+||+| ++|+++|++. +.|.+..++||+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~-----~~~~~Wy~G-~tL~~~l~~~-~~~~~~~~~p~r 235 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEK-----SDNMPWYKG-PTLLEALDTL-EPPKRPVDKPLR 235 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccC-----CCCCcccch-HHHHHHHhCC-CCCCcCCCCCeE
Confidence 346788888899999999998767899999999999865432 224589998 7899999875 457777889999
Q ss_pred EEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeE
Q 011581 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMV 375 (482)
Q Consensus 296 ~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 375 (482)
|+|+++|+++|.|+|++|+|.+|.|++||+|.++|.+. .++|++|+.++.+++.|.|||+|+++|++++..+++||||
T Consensus 236 ~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~v 313 (446)
T PTZ00141 236 LPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGV--TTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYV 313 (446)
T ss_pred EEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCc--EEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceE
Confidence 99999999999999999999999999999999999864 7899999999999999999999999999999999999999
Q ss_pred EeCCC-C-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEE
Q 011581 376 LAKPG-T-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRI 445 (482)
Q Consensus 376 l~~~~-~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~ 445 (482)
|++++ . +..+++|+|+|.||+++ .+|++||++++|+|+.+++|+|..|.++.+ +++++|++|+.+
T Consensus 314 l~~~~~~p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a 388 (446)
T PTZ00141 314 ASDSKNDPAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAA 388 (446)
T ss_pred EecCCCCCCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEE
Confidence 99974 3 34689999999999985 589999999999999999999999965433 356789999999
Q ss_pred EEEEEeCceEeecc------CCeEEEeeCCcEEEEEEEeeec
Q 011581 446 KMVVELIMPVACEQ------GMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 446 ~v~~~~~~p~~~~~------~~rfilr~~~~tvg~G~v~~v~ 481 (482)
.|+|++.+|+|+++ ++||+||++|+|+|+|.|++|.
T Consensus 389 ~v~l~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~ 430 (446)
T PTZ00141 389 IVKMVPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVE 430 (446)
T ss_pred EEEEEECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEe
Confidence 99999999999994 5899999999999999999875
No 13
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=4.3e-69 Score=554.82 Aligned_cols=387 Identities=38% Similarity=0.617 Sum_probs=344.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHh---------------cCCCCCcccccccCChhhhcCCceeeeeeeEeecC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALAS---------------LGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 146 (482)
+++++||+++||+|+|||||+|+|++.... .|...+.+.|.+|..++|+++|+|++.....++++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 578899999999999999999999865322 35556777889999999999999999999999999
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCC--CChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHHHHHH
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD--GPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EELLQLV 223 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~--g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~i 223 (482)
+..++|||||||++|.+++..++..+|++|+|+|+++ +...++++|+.++..++++++++++||+|+.++ ++.++.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999999998779999999999863 3455666
Q ss_pred HHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEe
Q 011581 224 ELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFS 303 (482)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~ 303 (482)
.+++.++++.+++....++++++||++|.|.... ....+||+| +.|+++|.. ++.|.+..++||+|+|+++|+
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~-----~~~~~wy~g-~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~ 235 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK-----SENMPWYNG-PTLLEALDN-LKPPEKPTDKPLRIPIQDVYS 235 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCcccc-----ccCCCcccH-HHHHHHHhc-CCCCccccCCCcEEEEEEEEe
Confidence 6788899988888656789999999999854322 234589998 899999876 566777788999999999999
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCC-C
Q 011581 304 ITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT-I 382 (482)
Q Consensus 304 v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~ 382 (482)
++|.|+|++|+|.+|+|++||.|.++|.+. .++|++|+.++.+++.|.|||+|+++|++++..++++||+|+++++ +
T Consensus 236 ~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~ 313 (425)
T PRK12317 236 ISGVGTVPVGRVETGVLKVGDKVVFMPAGV--VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPP 313 (425)
T ss_pred eCCCeEEEEEEEeeccEecCCEEEECCCCC--eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCC
Confidence 999999999999999999999999999865 7899999999999999999999999999999899999999999875 4
Q ss_pred CCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEEEEEEeCce
Q 011581 383 TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMVVELIMP 454 (482)
Q Consensus 383 ~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~v~~~~~~p 454 (482)
..+++|+|+|.||+++ .+|.+||++++|+|+.+++|+|..|....+ +++.++++||.+.|+|++.+|
T Consensus 314 ~~~~~f~a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 388 (425)
T PRK12317 314 TVAEEFTAQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKP 388 (425)
T ss_pred CcccEEEEEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCe
Confidence 5579999999999875 589999999999999999999999976432 357799999999999999999
Q ss_pred EeeccC------CeEEEeeCCcEEEEEEEeeecC
Q 011581 455 VACEQG------MRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 455 ~~~~~~------~rfilr~~~~tvg~G~v~~v~~ 482 (482)
+|++++ +||+||++|+|+|+|+|+++.+
T Consensus 389 ~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~ 422 (425)
T PRK12317 389 LVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKP 422 (425)
T ss_pred eEEEeCCcCCCCccEEEEECCCeEEEEEEEEecc
Confidence 999986 8999999999999999998863
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.6e-68 Score=548.77 Aligned_cols=387 Identities=36% Similarity=0.597 Sum_probs=343.9
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHH---------------hcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALA---------------SLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
.+++.+||+++||+|+|||||+++|+.... ..|...+.++|.+|..++|+++|+|++.....+++
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 467889999999999999999999986321 34556677788999999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC---ChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hHHHHH
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG---PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQ 221 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g---~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~~~~~ 221 (482)
++..++|||||||++|.+++..++..+|++|+|+|++++ ...++.+|+.++..++++++|+|+||+|+.+ .++.++
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 999999999999999999999999999999999999999 7789999999888888877999999999986 345566
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeE
Q 011581 222 LVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDV 301 (482)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v 301 (482)
.+.++++++++.+++....++++++||++|.|..... ...+||+| ++|+++|.+ +++|.+..++||+|+|+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~-----~~~~w~~g-~~l~~~l~~-~~~~~~~~~~p~r~~i~~v 235 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS-----ENTPWYKG-KTLLEALDA-LEPPEKPTDKPLRIPIQDV 235 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc-----cCCccccc-hHHHHHHhc-CCCCCCccCCCcEEEEEEE
Confidence 6777899999988887667899999999998643322 23589998 789999977 5566777889999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 302 FSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 302 ~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
|+++|.|+|++|+|.+|.|++||.|.++|.+. .++|++|+.++.++++|.|||+|+++|++++..++++||+|++++.
T Consensus 236 ~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 236 YSITGVGTVPVGRVETGVLKPGDKVVFEPAGV--SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred EecCCCeEEEEEEEccceeecCCEEEECCCCc--EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 99999999999999999999999999999864 7899999999999999999999999999999999999999999865
Q ss_pred -CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEEEEEEeC
Q 011581 382 -ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMVVELI 452 (482)
Q Consensus 382 -~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~v~~~~~ 452 (482)
++.+++|+|+|.||+++ .+|.+||++++|+|+.+++|+|..|..+.+ ++++++++||.+.|+|++.
T Consensus 314 ~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~ 388 (426)
T TIGR00483 314 PPKVAKEFTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPT 388 (426)
T ss_pred CCceeeEEEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEEC
Confidence 45578999999999986 589999999999999999999999875432 3577999999999999999
Q ss_pred ceEeecc------CCeEEEeeCCcEEEEEEEeeec
Q 011581 453 MPVACEQ------GMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 453 ~p~~~~~------~~rfilr~~~~tvg~G~v~~v~ 481 (482)
+|+|++. ++||+||++|+|+|+|.|+.+.
T Consensus 389 ~pi~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~ 423 (426)
T TIGR00483 389 KPMVIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423 (426)
T ss_pred CeeEEeecccCCCCccEEEEECCCEEEEEEEEEee
Confidence 9999997 6999999999999999999875
No 15
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.8e-63 Score=514.94 Aligned_cols=386 Identities=26% Similarity=0.351 Sum_probs=330.4
Q ss_pred hhhccCCceEEEEEecCCccHHHHHHHHHHhHHh---------------cCC--CCCcccccccCChhhhcCCceeeeee
Q 011581 78 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALAS---------------LGN--SAPKKYDEIDAAPEERARGITINTAT 140 (482)
Q Consensus 78 ~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~ 140 (482)
...+.++.++|+++||+|+|||||+++|+..... .|. ..+.++|.+|..++|++||+|++...
T Consensus 20 ~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~ 99 (474)
T PRK05124 20 HAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY 99 (474)
T ss_pred hhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE
Confidence 3445688899999999999999999999865321 333 24567789999999999999999999
Q ss_pred eEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHH
Q 011581 141 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EEL 219 (482)
Q Consensus 141 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~ 219 (482)
..+++++..++|||||||++|.+++..++..+|++|+|||+.+|+..||++|+.++..++++++|+++||||++++ ++.
T Consensus 100 ~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 100 RYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred EEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998889999999999863 445
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEE
Q 011581 220 LQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVE 299 (482)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~ 299 (482)
++.+.+++..+++.+++. ...+++|+||++|.|.... ....+||+| +.|++.|.. ++.|.+..+.||+|+|+
T Consensus 180 ~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~-----~~~~~wy~G-~tLl~~L~~-i~~~~~~~~~p~r~~I~ 251 (474)
T PRK05124 180 FERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQ-----SESMPWYSG-PTLLEVLET-VDIQRVVDAQPFRFPVQ 251 (474)
T ss_pred HHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccc-----cccccccch-hhHHHHHhh-cCCCCCCCCCCceeeEE
Confidence 666777788888777642 3689999999999864322 233589998 689998775 56666777899999999
Q ss_pred eEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCC
Q 011581 300 DVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKP 379 (482)
Q Consensus 300 ~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 379 (482)
++|+.......+.|+|.+|.|++||+|.++|.+. .++|++|+.++.+++.|.|||+|+++|++ ..++++|||||++
T Consensus 252 ~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~--~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 252 YVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGK--ESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEecCCcccceEEEEEeEEEecCCEEEEecCCc--eEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9987543222268999999999999999999874 79999999999999999999999999984 5789999999998
Q ss_pred CC-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc------ccccccCCCCEEEEEEEeC
Q 011581 380 GT-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELI 452 (482)
Q Consensus 380 ~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~~~~g~~~~v~~~~~ 452 (482)
+. +..++.|+|++.||+. .+|..||++++|+|+.+++|+|..|..+.+ .++.++++|+.+.|+|++.
T Consensus 328 ~~~~~~~~~f~a~i~~l~~------~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~ 401 (474)
T PRK05124 328 DEALQAVQHASADVVWMAE------QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFD 401 (474)
T ss_pred CCCCccceEEEEEEEEeCC------cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEEC
Confidence 75 4668999999999973 489999999999999999999999976544 2467899999999999999
Q ss_pred ceEeeccC------CeEEE--eeCCcEEEEEEEeeec
Q 011581 453 MPVACEQG------MRFAI--REGGKTVGAGVIQSII 481 (482)
Q Consensus 453 ~p~~~~~~------~rfil--r~~~~tvg~G~v~~v~ 481 (482)
+|+|++++ |||+| |++++|+|+|+|+++.
T Consensus 402 ~pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 402 EPLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred CeeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 99999986 67999 5678999999998764
No 16
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-64 Score=503.08 Aligned_cols=389 Identities=28% Similarity=0.455 Sum_probs=350.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh---------------HHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA---------------LASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN 147 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~---------------~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~ 147 (482)
+.+++++++||+|+|||||+++|++. ....|+.++.++|.+|...+||+||+|.+.....|+...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 46899999999999999999999854 245788899999999999999999999999999999999
Q ss_pred eEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh-------HHHHHHHHHHHHcCCCcEEEEEecCCCCChH-HH
Q 011581 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVDDE-EL 219 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~t~e~l~~~~~~~ip~iivviNK~D~~~~~-~~ 219 (482)
+.++|+|+|||.+|..+|+.++.++|+++||||++.|.+ +||+||+.+++.+|+.++||++||||+++|. ++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 999999999999999999999999999999999998654 8999999999999999999999999999965 68
Q ss_pred HHHHHHHHHHHH-hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEE
Q 011581 220 LQLVELEVRELL-SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAV 298 (482)
Q Consensus 220 ~~~i~~~i~~~l-~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I 298 (482)
+++++..+..+| +.+||...++.|+|+|++.|.|......+ .....||+| +.||+.|++ ...|++..++||++.|
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~--~~l~~WY~G-p~LL~~id~-~~~p~~~~~kPl~ltI 410 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQE--NELSQWYKG-PTLLSQIDS-FKIPERPIDKPLRLTI 410 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccc--hhhhhhhcC-ChHHHHHhh-ccCCCCcccCCeEEEh
Confidence 999999999999 88899988999999999999975433210 122489999 899999999 5567788889999999
Q ss_pred EeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEe-
Q 011581 299 EDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA- 377 (482)
Q Consensus 299 ~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~- 377 (482)
.|+|..++.|..++|+|++|.|+.||+|+++++.+ .++|++|.+++.+...|.|||.|.+.|.++....++.|++++
T Consensus 411 sdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e--~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 411 SDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSRE--DATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred hheeecCCCeeEEEEEEeccccccCCEEEEecCcc--eEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeec
Confidence 99999999999999999999999999999999865 889999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEEEE
Q 011581 378 KPGTI-TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMV 448 (482)
Q Consensus 378 ~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~v~ 448 (482)
.+..+ ..+..|.+++.||+.. .||..|.+..+|+|+..++|++.++....+ ..++++..|+.+.++
T Consensus 489 ~~~~~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~ve 563 (603)
T KOG0458|consen 489 GPQFPISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVE 563 (603)
T ss_pred CCCccccceeEEEEEEEEeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeee
Confidence 55554 4468899999999964 699999999999999999999998764332 346789999999999
Q ss_pred EEeCceEeeccC------CeEEEeeCCcEEEEEEEeeecC
Q 011581 449 VELIMPVACEQG------MRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 449 ~~~~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~~ 482 (482)
++..+|||++.+ +||++|..|+|||+|+|++|..
T Consensus 564 le~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~~ 603 (603)
T KOG0458|consen 564 LETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEIIQ 603 (603)
T ss_pred ccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeecC
Confidence 999999999954 8999999999999999999863
No 17
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=3.6e-63 Score=505.59 Aligned_cols=373 Identities=28% Similarity=0.399 Sum_probs=324.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHh---------------cCC--CCCcccccccCChhhhcCCceeeeeeeEeecCCe
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALAS---------------LGN--SAPKKYDEIDAAPEERARGITINTATVEYETENR 148 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~---------------~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 148 (482)
++|+++||+|+|||||+++|+..... .|. +++.++|.+|..++|+++|+|++.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999865321 333 2577889999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHHHHHHHHHH
Q 011581 149 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EELLQLVELEV 227 (482)
Q Consensus 149 ~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~i~~~i 227 (482)
.++|||||||++|.+++..++..+|++|+|||+.+|+.+||++|+.++..++++++|+++||||+.++ ++.++.+.+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999863 45666677788
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGR 307 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~ 307 (482)
.++++.+++. +++++|+||++|.|... .....+||+| +.|+++|... +.|.+..+.||+|+|+++|+....
T Consensus 161 ~~~~~~~~~~--~~~iipiSA~~g~ni~~-----~~~~~~wy~g-~tL~~~L~~~-~~~~~~~~~p~r~~i~~v~~~~~~ 231 (406)
T TIGR02034 161 LAFAEQLGFR--DVTFIPLSALKGDNVVS-----RSESMPWYSG-PTLLEILETV-EVERDAQDLPLRFPVQYVNRPNLD 231 (406)
T ss_pred HHHHHHcCCC--CccEEEeecccCCCCcc-----cccCCCccch-hHHHHHHHhc-CCCCCcCCCCcccceEEEeecCCC
Confidence 8888887763 68999999999985332 1234689987 7899998874 566677789999999999976443
Q ss_pred ceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCC-CCCCc
Q 011581 308 GTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT-ITPHT 386 (482)
Q Consensus 308 G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~ 386 (482)
+.-++|+|++|+|++||.|.++|.+. .++|++|+.++.+++.|.|||+|+++|++ ..++++|||||++++ +..++
T Consensus 232 ~~g~~G~v~~G~l~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~ 307 (406)
T TIGR02034 232 FRGYAGTIASGSVHVGDEVVVLPSGR--SSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVAD 307 (406)
T ss_pred cEEEEEEEecceeecCCEEEEeCCCc--EEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcce
Confidence 33378999999999999999999764 79999999999999999999999999984 578999999999977 56689
Q ss_pred eEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc------ccccccCCCCEEEEEEEeCceEeeccC
Q 011581 387 KFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELIMPVACEQG 460 (482)
Q Consensus 387 ~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~~~~g~~~~v~~~~~~p~~~~~~ 460 (482)
.|+|++.||++ .+|+.||++++|+|+.+++|+|..|....+ .+++.+.+|+.+.|+|++++|+|++.+
T Consensus 308 ~f~a~i~~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~ 381 (406)
T TIGR02034 308 QFAATLVWMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPY 381 (406)
T ss_pred EEEEEEEEeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcc
Confidence 99999999985 389999999999999999999999976443 245789999999999999999999986
Q ss_pred ------CeEEE--eeCCcEEEEEEE
Q 011581 461 ------MRFAI--REGGKTVGAGVI 477 (482)
Q Consensus 461 ------~rfil--r~~~~tvg~G~v 477 (482)
|||+| |++|+|+|+|+|
T Consensus 382 ~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 382 AENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cCCCcceeEEEEECCCCCeEEEEeC
Confidence 59999 678999999986
No 18
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-62 Score=462.85 Aligned_cols=378 Identities=29% Similarity=0.397 Sum_probs=330.1
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHH--------h---cCC------CCCcccccccCChhhhcCCceeeeeeeEee
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALA--------S---LGN------SAPKKYDEIDAAPEERARGITINTATVEYE 144 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~--------~---~g~------~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 144 (482)
.+..++++.||++|.|||||+++|++... . ..+ .....+..+|-++.|+++||||+.++.+|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 46678999999999999999999986411 1 111 122334567889999999999999999999
Q ss_pred cCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hHHHHHHH
Q 011581 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQLV 223 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~i 223 (482)
++.+++++.|||||+.|.+||..|++.||++|++|||..|+..||++|..++..+|++|+++++||||+++ .++.++.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 45789999
Q ss_pred HHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEe
Q 011581 224 ELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFS 303 (482)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~ 303 (482)
..++..+.+++++. ...+||+||+.|+|... +...++||+| +.||+.|+..- .......++|||+|+.+.+
T Consensus 163 ~~dy~~fa~~L~~~--~~~~IPiSAl~GDNV~~-----~s~~mpWY~G-ptLLe~LE~v~-i~~~~~~~~~RfPVQ~V~R 233 (431)
T COG2895 163 VADYLAFAAQLGLK--DVRFIPISALLGDNVVS-----KSENMPWYKG-PTLLEILETVE-IADDRSAKAFRFPVQYVNR 233 (431)
T ss_pred HHHHHHHHHHcCCC--cceEEechhccCCcccc-----cccCCCcccC-ccHHHHHhhcc-ccccccccceeeceEEecC
Confidence 99999999999885 56899999999996543 3455699999 78999888743 3334456789999999997
Q ss_pred eC--CCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 304 IT--GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 304 v~--g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
.. .+| +.|+|.+|.+++||.|.+.|+|. ..+|+.|..+..+.++|.+|+.|++.|. ++.|+.|||+|+..+.
T Consensus 234 p~~dfRG--yaGtiasG~v~~Gd~vvvlPsG~--~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~ 307 (431)
T COG2895 234 PNLDFRG--YAGTIASGSVKVGDEVVVLPSGK--TSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADA 307 (431)
T ss_pred CCCcccc--cceeeeccceecCCeEEEccCCC--eeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCC
Confidence 54 466 89999999999999999999986 8899999999999999999999999998 7889999999999876
Q ss_pred -CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccc------cccccCCCCEEEEEEEeCce
Q 011581 382 -ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE------ESKMVMPGDRIKMVVELIMP 454 (482)
Q Consensus 382 -~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~------~~~~~~~g~~~~v~~~~~~p 454 (482)
+.+++.|.|.|+||... ||.+|..+.+.+++..+.++|..|....|. ..+.+..|+.+.|++.++.|
T Consensus 308 ~~~~~~~f~A~vvWm~~~------pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~p 381 (431)
T COG2895 308 PPAVADAFDADVVWMDEE------PLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKP 381 (431)
T ss_pred CcchhhhcceeEEEecCC------CCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCc
Confidence 55589999999999863 899999999999999999999999865543 45689999999999999999
Q ss_pred EeeccC------CeEEEee--CCcEEEEEEEeee
Q 011581 455 VACEQG------MRFAIRE--GGKTVGAGVIQSI 480 (482)
Q Consensus 455 ~~~~~~------~rfilr~--~~~tvg~G~v~~v 480 (482)
++++++ |.|||-| .+.|+|+|+|..-
T Consensus 382 i~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~ 415 (431)
T COG2895 382 IAFDAYAENRATGSFILIDRLTNGTVGAGMILAS 415 (431)
T ss_pred eeecccccCcccccEEEEEcCCCCceeceeeech
Confidence 999986 7899865 4789999999753
No 19
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=3.2e-60 Score=509.91 Aligned_cols=382 Identities=27% Similarity=0.370 Sum_probs=328.7
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHH---------------hcCC--CCCcccccccCChhhhcCCceeeeeeeEe
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALA---------------SLGN--SAPKKYDEIDAAPEERARGITINTATVEY 143 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~ 143 (482)
..++.++|+++||+|+|||||+|+|+.... ..|. ..+.+.|.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 456778999999999999999999997532 2333 45566789999999999999999999999
Q ss_pred ecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hHHHHHH
Q 011581 144 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQL 222 (482)
Q Consensus 144 ~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~ 222 (482)
++++..++|||||||++|.+++..++..+|++++|||+..|+.+||++|+.++..++++++|+++||||+++ .++.++.
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887999999999986 3455666
Q ss_pred HHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEE
Q 011581 223 VELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVF 302 (482)
Q Consensus 223 i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~ 302 (482)
+..++.++++.+++ .+++++|+||++|.|.... ....+||+| ++|++.|... +.|.+..++||+|+|+++|
T Consensus 180 i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~-----~~~~~wy~g-~tL~~~l~~~-~~~~~~~~~p~r~~i~~v~ 250 (632)
T PRK05506 180 IVADYRAFAAKLGL--HDVTFIPISALKGDNVVTR-----SARMPWYEG-PSLLEHLETV-EIASDRNLKDFRFPVQYVN 250 (632)
T ss_pred HHHHHHHHHHHcCC--CCccEEEEecccCCCcccc-----ccCCCcccH-hHHHHHHhcC-CCCCCcCCCCceeeEEEEE
Confidence 77788888888887 3688999999999854322 123589988 7899999875 5566667899999999998
Q ss_pred eeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCC-
Q 011581 303 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT- 381 (482)
Q Consensus 303 ~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~- 381 (482)
+....+..++|+|.+|+|++||+|.++|.+. .++|++|++++.+++.|.|||+|+++|++ ..++++|||||++++
T Consensus 251 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~--~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~ 326 (632)
T PRK05506 251 RPNLDFRGFAGTVASGVVRPGDEVVVLPSGK--TSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNR 326 (632)
T ss_pred ecCCCceEEEEEEecceeecCCEEEEcCCCc--eEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCC
Confidence 7542223378999999999999999999864 79999999999999999999999999984 568999999999976
Q ss_pred CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc------ccccccCCCCEEEEEEEeCceE
Q 011581 382 ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELIMPV 455 (482)
Q Consensus 382 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~~~~g~~~~v~~~~~~p~ 455 (482)
++.++.|+|++.||+++ ++.+||++++|+|+.+++|+|..|..+.+ +++.++++|+.+.|+|++.+|+
T Consensus 327 ~~~~~~f~a~i~~l~~~------~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi 400 (632)
T PRK05506 327 PEVADQFDATVVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPI 400 (632)
T ss_pred CcceeEEEEEEEEeccc------ccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEE
Confidence 44588999999999864 68899999999999999999999875332 3567899999999999999999
Q ss_pred eeccC------CeEEEee--CCcEEEEEEEeeec
Q 011581 456 ACEQG------MRFAIRE--GGKTVGAGVIQSII 481 (482)
Q Consensus 456 ~~~~~------~rfilr~--~~~tvg~G~v~~v~ 481 (482)
|++.+ |||+||| +|+|+|+|+|+..+
T Consensus 401 ~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~ 434 (632)
T PRK05506 401 AFDPYARNRTTGSFILIDRLTNATVGAGMIDFAL 434 (632)
T ss_pred eeeeccccccCceEEEEeccCCceEEEEEECccc
Confidence 99986 6799954 89999999998764
No 20
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=6.2e-60 Score=482.52 Aligned_cols=352 Identities=29% Similarity=0.457 Sum_probs=301.7
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee---------------c
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE---------------T 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---------------~ 145 (482)
.+++.++|+++||+|||||||+.+|++. ..|++++|.+||+|++..+..+. .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 4578899999999999999999999854 44788999999999988765441 1
Q ss_pred C------------------CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-ChHHHHHHHHHHHHcCCCcEEE
Q 011581 146 E------------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMPQTKEHILLAKQVGVPNMVV 206 (482)
Q Consensus 146 ~------------------~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-~~~~t~e~l~~~~~~~ip~iiv 206 (482)
. .+.++|+|||||++|.++|+.++..+|++++|||+.++ +.+||++|+.++..++++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 0 24789999999999999999999999999999999996 7999999999999999998999
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 207 FLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 207 viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
|+||||+++.++. +...++++++++.+. ....|++|+||++|. |+++|+++|.+.+|.|
T Consensus 177 vlNKiDlv~~~~~-~~~~~ei~~~l~~~~--~~~~~iipVSA~~G~------------------nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 177 LQNKIDLVKEAQA-QDQYEEIRNFVKGTI--ADNAPIIPISAQLKY------------------NIDVVLEYICTQIPIP 235 (460)
T ss_pred EEecccccCHHHH-HHHHHHHHHHHHhhc--cCCCeEEEeeCCCCC------------------CHHHHHHHHHhhCCCC
Confidence 9999999875443 334457777776543 246899999999998 8999999999888888
Q ss_pred CCCCCCCeeEEEEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCC-------cc----ceeEEEEEeeccc
Q 011581 287 QRQTDLPFLLAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLK-------ET----RNFTVTGVEMFQK 347 (482)
Q Consensus 287 ~~~~~~~~~~~I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~~-------~~----~~~~V~~i~~~~~ 347 (482)
.++.+.||+|+|+++|.+.+ +|+|++|+|.+|+|++||.|.+.|.+ ++ ..++|++|+.++.
T Consensus 236 ~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~ 315 (460)
T PTZ00327 236 KRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENN 315 (460)
T ss_pred CCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCe
Confidence 88888999999999998874 79999999999999999999999964 11 2579999999999
Q ss_pred ccceeecCCeEEEEEc---cccccCcccCeEEeCCCCCCC-CceEEEEEEEeecC-----CCCC----CCCCCCCCccEE
Q 011581 348 TLDEAMAGDNVGLLLR---GVQKADIQRGMVLAKPGTITP-HTKFLAIVYVLKKE-----EGGR----HSPFFAGYRPQF 414 (482)
Q Consensus 348 ~v~~a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~-----~~~~----~~~i~~g~~~~~ 414 (482)
++++|.|||+|+++++ +++..++.|||||++++..++ ++.|+|++.||++. ++++ ..+|..||++++
T Consensus 316 ~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l 395 (460)
T PTZ00327 316 ELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMI 395 (460)
T ss_pred ECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEE
Confidence 9999999999999987 677889999999999876544 56999999999873 1111 258999999999
Q ss_pred EEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEee---C-CcEEEEEEEee
Q 011581 415 YMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIRE---G-GKTVGAGVIQS 479 (482)
Q Consensus 415 ~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~---~-~~tvg~G~v~~ 479 (482)
|+|+.+++|+|..|... . .++|++.+|+|+++|+||+||+ . ++|+|+|.|.+
T Consensus 396 ~~gt~~~~~~i~~i~~~------------~-~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 396 NIGSTTTGGRVVGIKDD------------G-IAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EecccEEEEEEEEeCCC------------e-EEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 99999999999998531 1 7789999999999999999985 2 58999999863
No 21
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=5.4e-60 Score=448.05 Aligned_cols=365 Identities=32% Similarity=0.511 Sum_probs=317.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC---------------
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--------------- 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--------------- 146 (482)
-+++++|+++||+|+|||||++.|+....+.|.+..+ .++|..++|.++|.|-+.+...+.++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR--~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATR--SYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchh--hhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 4568999999999999999999998766666665554 46788888888898877665544321
Q ss_pred --------CeEEEEEeCCCchhhHHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh
Q 011581 147 --------NRHYAHVDCPGHADYVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 147 --------~~~i~liDtPG~~~~~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
++-+.|+||-||+.|+.++++++ ...|+.+|+|.|++|++..|+||+.++..+++| +|++++|+|+.++
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~d 270 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVPD 270 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCcH
Confidence 45678999999999999999998 478999999999999999999999999999999 8899999999985
Q ss_pred HHHHHHHHHHHHHHHhhcCC--------------------CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHH
Q 011581 217 EELLQLVELEVRELLSSYEF--------------------PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELM 276 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~--------------------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll 276 (482)
+++..+.+++..+|+..+- ...-+|++.+|+.+|. |+ ++|
T Consensus 271 -dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~------------------Gl-dlL 330 (527)
T COG5258 271 -DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE------------------GL-DLL 330 (527)
T ss_pred -HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc------------------cH-HHH
Confidence 4555566688888876541 0114788889999887 75 566
Q ss_pred HHhhhcCCCCCC-CCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecC--CccceeEEEEEeecccccceee
Q 011581 277 DSVDSYIPIPQR-QTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGL--KETRNFTVTGVEMFQKTLDEAM 353 (482)
Q Consensus 277 ~~l~~~l~~~~~-~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~--~~~~~~~V~~i~~~~~~v~~a~ 353 (482)
+.+...+|...+ +...||+|+|+++|++.|+|+|+.|.|.+|.++.||+++++|. |+|+.++|+||++|+..+++|.
T Consensus 331 ~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~ 410 (527)
T COG5258 331 DEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAK 410 (527)
T ss_pred HHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEecccc
Confidence 666666765433 4567999999999999999999999999999999999999986 8889999999999999999999
Q ss_pred cCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc
Q 011581 354 AGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD 433 (482)
Q Consensus 354 aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~ 433 (482)
||++++++++++.++.++|||||+....|.+.++|+|++++|.|| +.|..||.+++|+-+.+++++++.+.
T Consensus 411 aG~iig~Al~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~~id---- 481 (527)
T COG5258 411 AGSIIGIALKGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFEEID---- 481 (527)
T ss_pred CCcEEEEEecccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEEEcc----
Confidence 999999999999999999999999876788999999999999998 58999999999999999999999995
Q ss_pred ccccccCCCCEEEEEEEeC-ceEeeccCCeEEEeeCCcEEEEEEEeeec
Q 011581 434 EESKMVMPGDRIKMVVELI-MPVACEQGMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 434 ~~~~~~~~g~~~~v~~~~~-~p~~~~~~~rfilr~~~~tvg~G~v~~v~ 481 (482)
..++++||+..++++|. +|.+++.|++|+||+ |++.|+|.|+.+.
T Consensus 482 --~~~L~~GD~g~vr~~fkyrP~~v~eGQ~fvFRe-GrskgvG~v~~~~ 527 (527)
T COG5258 482 --KGFLMPGDRGVVRMRFKYRPHHVEEGQKFVFRE-GRSKGVGRVIRVD 527 (527)
T ss_pred --cccccCCCcceEEEEEEeCchhhccCcEEEEec-CCCccceEEeccC
Confidence 36899999999999985 999999999999997 7999999999863
No 22
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-59 Score=442.61 Aligned_cols=385 Identities=29% Similarity=0.438 Sum_probs=341.1
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHH---------------hHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTM---------------ALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~---------------~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 146 (482)
.+.+.|++++||+|+||||+-+.|+. ...+.++.++...|.+|...+|++.|-|+.....+|++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46789999999999999999998852 234567788888999999999999999999999999999
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh-------HHHHHHHHHHHHcCCCcEEEEEecCCCCC--h-
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD--D- 216 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~t~e~l~~~~~~~ip~iivviNK~D~~~--~- 216 (482)
.++++++|+|||..|..+|+.++.++|.++||++|..|.+ .||+||..+++..++.|+|+++||||-.. |
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 9999999999999999999999999999999999987654 69999999999999999999999999764 3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCee
Q 011581 217 EELLQLVELEVRELLSSYEFPG-DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~-~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~ 295 (482)
.+++++++..+..+|+.+|++. .++.++|+|+++|.|.-... ....+||.| +.+++.|++ +|...|..+.||+
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~----~s~cpwy~g-p~fl~~ld~-l~~~~R~~~GP~~ 309 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT----DSVCPWYKG-PIFLEYLDE-LPHLERILNGPIR 309 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc----cccCCcccC-Cccceehhc-cCcccccCCCCEE
Confidence 5789999999999999888865 35678999999998543322 145699998 788999988 7888899999999
Q ss_pred EEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeE
Q 011581 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMV 375 (482)
Q Consensus 296 ~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 375 (482)
++|.+-|+ ..|||+.|+|+||.++.||.+.++|... .+.|.+|......++.+.||+++-|.|+|++..||..|.|
T Consensus 310 ~pI~~Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPnk~--~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~Gfi 385 (501)
T KOG0459|consen 310 CPVANKYK--DMGTVVGGKVESGSIKKGQQLVVMPNKT--NVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFI 385 (501)
T ss_pred eehhhhcc--ccceEEEEEecccceecCCeEEEccCCc--ceEEEEEecccceeeeccCCcceEEEecccchhhccCceE
Confidence 99999886 4679999999999999999999999764 8899999999889999999999999999999999999999
Q ss_pred EeCCCCC-CCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEE
Q 011581 376 LAKPGTI-TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIK 446 (482)
Q Consensus 376 l~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~ 446 (482)
||++.++ .+.+.|+|+|.++++. +-|.+||.+++|+|+....|.|..| ...| ..+.+++.|+.+.
T Consensus 386 L~~~~n~~~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li-~~idkktg~ksKkrprFvkq~~~~i 459 (501)
T KOG0459|consen 386 LCSPNNPCKSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLI-HLIDKKTGEKSKKRPRFVKQGQKCI 459 (501)
T ss_pred EecCCCccccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeee-eeecccccccccCCCeeecCCcEEE
Confidence 9999885 4568999999999985 5688999999999999999998543 2222 3567899999999
Q ss_pred EEEEeCceEeeccC------CeEEEeeCCcEEEEEEEeeecC
Q 011581 447 MVVELIMPVACEQG------MRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 447 v~~~~~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~~ 482 (482)
++|+...|||++.+ +||.|||.|+|||+|+|+++.+
T Consensus 460 arl~t~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 460 ARLETEGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred EEEecCCcEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 99999999999975 8999999999999999999864
No 23
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=6.7e-57 Score=459.35 Aligned_cols=351 Identities=35% Similarity=0.534 Sum_probs=297.4
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-------------
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET------------- 145 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~------------- 145 (482)
.+++++++||+++||+|+|||||+++|++. .+|..++|+++|+|++.....+++
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 69 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYT 69 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCcccccc
Confidence 467889999999999999999999999542 468899999999999876543222
Q ss_pred -C------------CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 146 -E------------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 146 -~------------~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
. .+.++|||||||++|..+++.++..+|++++|+|+.++. ..++.+++..+..++++++++|+||+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 70 TEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKI 149 (411)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEee
Confidence 1 257999999999999999999999999999999999988 89999999999889987789999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCC
Q 011581 212 DQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTD 291 (482)
Q Consensus 212 D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~ 291 (482)
|+.+.++..+. .+++.++++.+. ....|++++||++|. |+++|++.|.+.++.|.+..+
T Consensus 150 Dl~~~~~~~~~-~~~i~~~l~~~~--~~~~~ii~vSA~~g~------------------gI~~L~~~L~~~l~~~~~~~~ 208 (411)
T PRK04000 150 DLVSKERALEN-YEQIKEFVKGTV--AENAPIIPVSALHKV------------------NIDALIEAIEEEIPTPERDLD 208 (411)
T ss_pred ccccchhHHHH-HHHHHHHhcccc--CCCCeEEEEECCCCc------------------CHHHHHHHHHHhCCCCCCCCC
Confidence 99875443222 235666665432 235899999999998 899999999998888888889
Q ss_pred CCeeEEEEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCCc----------cceeEEEEEeecccccceee
Q 011581 292 LPFLLAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLKE----------TRNFTVTGVEMFQKTLDEAM 353 (482)
Q Consensus 292 ~~~~~~I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~~~----------~~~~~V~~i~~~~~~v~~a~ 353 (482)
.||+|+|+++|++++ +|+|++|+|.+|.|++||.|.++|.++ ...++|++|+.++.++++|.
T Consensus 209 ~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~ 288 (411)
T PRK04000 209 KPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEAR 288 (411)
T ss_pred CCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEc
Confidence 999999999998876 467999999999999999999999752 12479999999999999999
Q ss_pred cCCeEEEEEc---cccccCcccCeEEeCCCCCC-CCceEEEEEEEeecCCCCC----CCCCCCCCccEEEEeeeeeeeeE
Q 011581 354 AGDNVGLLLR---GVQKADIQRGMVLAKPGTIT-PHTKFLAIVYVLKKEEGGR----HSPFFAGYRPQFYMRTTDVTGRV 425 (482)
Q Consensus 354 aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~~-~~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i 425 (482)
|||+|+++|+ +++..++++||||+++++++ .++.|+|++.||++.+..+ ..+|..||++++|+|+.+++|+|
T Consensus 289 ~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i 368 (411)
T PRK04000 289 PGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVV 368 (411)
T ss_pred CCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEE
Confidence 9999999996 67778999999999997744 5689999999998722111 25899999999999999999999
Q ss_pred eeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEE--eeCC--cEEEEEEE
Q 011581 426 SSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAI--REGG--KTVGAGVI 477 (482)
Q Consensus 426 ~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfil--r~~~--~tvg~G~v 477 (482)
..|.. + .++++|++|+|+++|+||+| |+++ +++|.|.|
T Consensus 369 ~~i~~------------~--~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~ 410 (411)
T PRK04000 369 TSARK------------D--EAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 410 (411)
T ss_pred EEcCC------------c--EEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEe
Confidence 99852 3 67788999999999999999 6777 99999987
No 24
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=6.4e-57 Score=477.41 Aligned_cols=336 Identities=30% Similarity=0.470 Sum_probs=295.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCchhhHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~ 165 (482)
.|+++||+|+|||||+++|++. .+|.+++|+++|+|++..+..+.. ++..+.|||||||++|.++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 5899999999999999999853 357888999999999998877765 45678999999999999999
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
..++..+|++++|||+++|+.+||++|+.++..+++|++|||+||+|+++. +..+.+.+++.++++..++. ..|+++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~~--~~~ii~ 145 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGFA--EAKLFV 145 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCCC--CCcEEE
Confidence 999999999999999999999999999999999999987899999999874 44445566888888877653 578999
Q ss_pred cchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCE
Q 011581 246 GSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGET 325 (482)
Q Consensus 246 ~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~ 325 (482)
+||++|. |+++|++.|.+.. .+.+..+.||+|+|+++|+++|.|+|++|+|.+|+|++||+
T Consensus 146 VSA~tG~------------------gI~~L~~~L~~~~-~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~ 206 (614)
T PRK10512 146 TAATEGR------------------GIDALREHLLQLP-EREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDT 206 (614)
T ss_pred EeCCCCC------------------CCHHHHHHHHHhh-ccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCE
Confidence 9999998 8899999998754 45556788999999999999999999999999999999999
Q ss_pred EEEecCCccceeEEEEEeecccccceeecCCeEEEEEcc-ccccCcccCeEEeCCCCCCCCceEEEEEEEeecCCCCCCC
Q 011581 326 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRG-VQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHS 404 (482)
Q Consensus 326 v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~ 404 (482)
|.+.|.+. .++|++|+.++.+++.|.|||+|+++|++ ++..++++||+|++++.+.++..+.+ ++... .
T Consensus 207 v~i~p~~~--~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~---~l~~~-----~ 276 (614)
T PRK10512 207 LWLTGVNK--PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIV---ELQTH-----T 276 (614)
T ss_pred EEEcCCCC--cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEE---EEcCC-----c
Confidence 99999764 78999999999999999999999999997 88899999999998876666666544 34432 4
Q ss_pred CCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEee--CCcEEEEEEEeeec
Q 011581 405 PFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIRE--GGKTVGAGVIQSII 481 (482)
Q Consensus 405 ~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~--~~~tvg~G~v~~v~ 481 (482)
||+.|+++++|+|+.++.|+|..+. .+.+++.+++|+++..|+||+||+ ..+|+|+|.|+.+.
T Consensus 277 ~l~~~~~~~~~~gt~~~~~~i~~l~--------------~~~~~l~l~~p~~~~~gdr~ilr~~s~~~tigGg~Vld~~ 341 (614)
T PRK10512 277 PLTQWQPLHIHHAASHVTGRVSLLE--------------DNLAELVLDTPLWLADNDRLVLRDISARNTLAGARVVMLN 341 (614)
T ss_pred cCCCCCEEEEEEcccEEEEEEEEcC--------------CeEEEEEECCcccccCCCEEEEEeCCCCEEEEEEEEcccC
Confidence 8999999999999999999999882 357899999999999999999998 46899999998754
No 25
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=3.6e-56 Score=454.51 Aligned_cols=347 Identities=36% Similarity=0.543 Sum_probs=294.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee--------------c---
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE--------------T--- 145 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--------------~--- 145 (482)
++.++|+++||+|+|||||+++|++. .+|..++|+++|+|++..+..++ .
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 57889999999999999999999642 46889999999999988754432 1
Q ss_pred ---------CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 146 ---------ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 146 ---------~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
....++|||||||++|.+++..++..+|++++|||++++. ..|+++|+..+..++++++++++||+|+.+
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1367999999999999999999999999999999999998 899999999999999888999999999987
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCee
Q 011581 216 DEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295 (482)
Q Consensus 216 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~ 295 (482)
.+...+. .+++.++++... ...+|++++||++|. |+++|+++|.+.++.|.++.+.||+
T Consensus 149 ~~~~~~~-~~~i~~~l~~~~--~~~~~ii~vSA~~g~------------------gi~~L~e~L~~~l~~~~~~~~~~~~ 207 (406)
T TIGR03680 149 KEKALEN-YEEIKEFVKGTV--AENAPIIPVSALHNA------------------NIDALLEAIEKFIPTPERDLDKPPL 207 (406)
T ss_pred HHHHHHH-HHHHHhhhhhcc--cCCCeEEEEECCCCC------------------ChHHHHHHHHHhCCCCCCCCCCCcE
Confidence 5433222 235666665442 235899999999998 8999999999988888788889999
Q ss_pred EEEEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCCc--------c--ceeEEEEEeecccccceeecCCe
Q 011581 296 LAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLKE--------T--RNFTVTGVEMFQKTLDEAMAGDN 357 (482)
Q Consensus 296 ~~I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~~~--------~--~~~~V~~i~~~~~~v~~a~aG~~ 357 (482)
|+|+++|.+++ +|+|++|+|.+|+|++||.|.++|.++ + ..++|++|+.++.++++|.|||+
T Consensus 208 ~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~ 287 (406)
T TIGR03680 208 MYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGL 287 (406)
T ss_pred EEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCE
Confidence 99999998876 577999999999999999999999742 1 24799999999999999999999
Q ss_pred EEEEEc---cccccCcccCeEEeCCCCC-CCCceEEEEEEEeecCCC----CCCCCCCCCCccEEEEeeeeeeeeEeeee
Q 011581 358 VGLLLR---GVQKADIQRGMVLAKPGTI-TPHTKFLAIVYVLKKEEG----GRHSPFFAGYRPQFYMRTTDVTGRVSSIM 429 (482)
Q Consensus 358 v~l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~i~ 429 (482)
|+++|+ +++..++++||||++++.. +.++.|+|++.||.+... .+..+|+.||++++|+|+.+++|+|..+.
T Consensus 288 v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~ 367 (406)
T TIGR03680 288 VGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSAR 367 (406)
T ss_pred EEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcC
Confidence 999984 6778899999999999764 446899999999986311 11358999999999999999999999985
Q ss_pred ccccccccccCCCCEEEEEEEeCceEeeccCCeEEE--eeCC--cEEEEEEE
Q 011581 430 NDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAI--REGG--KTVGAGVI 477 (482)
Q Consensus 430 ~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfil--r~~~--~tvg~G~v 477 (482)
. + .++++|.+|+|+++|+||+| |.++ +++|.|.|
T Consensus 368 ~------------~--~~~l~l~~p~~~~~g~r~~~~~~~~~~~~~~g~g~~ 405 (406)
T TIGR03680 368 K------------D--EIEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII 405 (406)
T ss_pred C------------c--EEEEEECCcEEcCCCCEEEEEEecCCceEEEEEEEe
Confidence 2 2 47788999999999999999 4554 89999987
No 26
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=2.9e-58 Score=434.63 Aligned_cols=410 Identities=23% Similarity=0.337 Sum_probs=339.9
Q ss_pred ccCCCCCCCCCCC--CCCcccccccceeeechhhHHHHHhhhhhhccCC------ceEEEEEecCCccHHHHHHHHHHhH
Q 011581 38 RTKLTPSNLSSSF--LPPFATTTAVTVTTTRRRSLIVRAARGKFERKKP------HVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 38 ~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..-|++.++..|+ ...++....+....++++..........+.++.+ ..+|+++|.+|+|||||++.|++..
T Consensus 78 ~sGLseed~eas~at~~~~ae~I~Adv~klreR~~~gG~~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 78 KSGLSEEDLEASAATQLKIAEKIPADVTKLRERKQTGGGTEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred ccCCCHHHHHHHHHHHHHHHhhCccHhhhhhhHHhcCCCeeEEEEeCCCCCccceeEEEEEEecccCCcceeEeeeeecc
Confidence 4467778887777 5567788888888888888776555555555443 4689999999999999999999998
Q ss_pred HhcCCCCCcccccccCChhhhcCCceee--eeeeEee-----------------------cCCeEEEEEeCCCchhhHHH
Q 011581 110 ASLGNSAPKKYDEIDAAPEERARGITIN--TATVEYE-----------------------TENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 110 ~~~g~~~~~~~~~~d~~~~e~~~g~Ti~--~~~~~~~-----------------------~~~~~i~liDtPG~~~~~~~ 164 (482)
.+.|++..+...+. +++|.+.|-|-. .....|+ ...+-++|||.+||++|+++
T Consensus 158 LDnGRG~ARqkLFR--HKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKT 235 (641)
T KOG0463|consen 158 LDNGRGAARQKLFR--HKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKT 235 (641)
T ss_pred cccCccHHHHHHhh--hhhhcccCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhhhhhe
Confidence 88998877654444 444544444432 2222222 12356889999999999999
Q ss_pred HHhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC-----
Q 011581 165 MITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP----- 237 (482)
Q Consensus 165 ~~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~----- 237 (482)
++.++. ..|+.+|+|.++.|+..+|+||+.++..+.+| +++|++|+|++...-..+.++ .+..+++..|+.
T Consensus 236 TvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMCPANiLqEtmK-ll~rllkS~gcrK~Pvl 313 (641)
T KOG0463|consen 236 TVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMCPANILQETMK-LLTRLLKSPGCRKLPVL 313 (641)
T ss_pred eeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccCcHHHHHHHHH-HHHHHhcCCCcccCcEE
Confidence 999996 68999999999999999999999999999999 788999999998665555554 778888876642
Q ss_pred ----------------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC-CCCCCCCeeEEEEe
Q 011581 238 ----------------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP-QRQTDLPFLLAVED 300 (482)
Q Consensus 238 ----------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~-~~~~~~~~~~~I~~ 300 (482)
..-+|+|.+|..+|. ++ +||..+.+.++.. ....+.|..|+|+|
T Consensus 314 Vrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~------------------NL-~LLkmFLNlls~R~~~~E~~PAeFQIDD 374 (641)
T KOG0463|consen 314 VRSMDDVVHAAVNFPSERVCPIFQVSNVTGT------------------NL-PLLKMFLNLLSLRRQLNENDPAEFQIDD 374 (641)
T ss_pred EecccceEEeeccCccccccceEEeccccCC------------------Ch-HHHHHHHhhcCcccccccCCCcceeecc
Confidence 123566777777766 33 5666666655432 23467799999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecC--CccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeC
Q 011581 301 VFSITGRGTVATGRVERGTIKVGETVDLVGL--KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAK 378 (482)
Q Consensus 301 v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~--~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 378 (482)
+|.++|+|+|++|+..+|+|+.+|.+.++|. |.|.+..|++|++.+.++..+.+||.+.++|+.++..++++|||+++
T Consensus 375 ~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVs 454 (641)
T KOG0463|consen 375 IYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVS 454 (641)
T ss_pred eEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhHhhhcchhhhhcceEEec
Confidence 9999999999999999999999999999986 78889999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeC-ceEe
Q 011581 379 PGT-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELI-MPVA 456 (482)
Q Consensus 379 ~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~-~p~~ 456 (482)
++- |.++|.|+|+|.+|+|| +.|.+.|+.++|||+.+++|.|.++. ..+++.||.+.|.|+|. +|+|
T Consensus 455 p~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAtivsM~------kdcLRTGDka~V~FrFIkqPEY 523 (641)
T KOG0463|consen 455 PKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATIVSMG------KDCLRTGDKAKVQFRFIKQPEY 523 (641)
T ss_pred CCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeeeeecC------hhhhhcCCcceEEEEEecCcce
Confidence 874 78899999999999998 68999999999999999999999985 36899999999999986 5999
Q ss_pred eccCCeEEEeeCCcEEEEEEEeeecC
Q 011581 457 CEQGMRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 457 ~~~~~rfilr~~~~tvg~G~v~~v~~ 482 (482)
++++.|++||+ |+|.++|.|+++++
T Consensus 524 ir~gqrlVFRE-GRTKAVGti~~~lp 548 (641)
T KOG0463|consen 524 IRPGQRLVFRE-GRTKAVGTISSVLP 548 (641)
T ss_pred ecCCceEEeec-ccceeeeeeccccc
Confidence 99999999998 79999999998864
No 27
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=4.4e-53 Score=447.16 Aligned_cols=336 Identities=28% Similarity=0.484 Sum_probs=287.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++||+|||||||+++|++. ..|.+++|+.+|+|++..+..++.++..+.|||||||++|.+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~-------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI-------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc-------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999853 24778889999999999988888888999999999999999999
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
..++..+|++++|||+++|+.+|+.+|+.++..+++|++|+|+||||+++.+ ..+.+.+++.++++.+++. .+.|+++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~-~~~~~~~ei~~~l~~~~~~-~~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE-EIKRTEMFMKQILNSYIFL-KNAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH-HHHHHHHHHHHHHHHhCCC-CCCcEEE
Confidence 9999999999999999999999999999999999999899999999998743 3444556788888877653 2589999
Q ss_pred cchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC-CCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCC
Q 011581 246 GSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP-QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGE 324 (482)
Q Consensus 246 ~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~-~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~ 324 (482)
+||++|. |+.++++.|.+.+... ....+.||+|+|+++|+++|.|+|++|+|.+|+|++||
T Consensus 146 vSA~tG~------------------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd 207 (581)
T TIGR00475 146 TSAKTGQ------------------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGD 207 (581)
T ss_pred EeCCCCC------------------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCC
Confidence 9999998 6667766665543221 11257899999999999999999999999999999999
Q ss_pred EEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEeecCCCCCCC
Q 011581 325 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHS 404 (482)
Q Consensus 325 ~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~ 404 (482)
+|.++|.+. .++|++|+.++++++.|.|||+|+++|++++..+++||++++++..+ ...+.+.+.. . .
T Consensus 208 ~l~i~P~~~--~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~--~~~~~~~~~~---~-----~ 275 (581)
T TIGR00475 208 NLRLLPINH--EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP--KLRVVVKFIA---E-----V 275 (581)
T ss_pred EEEECCCCc--eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC--CceEEEEEEc---C-----C
Confidence 999999864 79999999999999999999999999999999999999888766432 2334433322 1 3
Q ss_pred CCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeC-CcEEEEEEEeee
Q 011581 405 PFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREG-GKTVGAGVIQSI 480 (482)
Q Consensus 405 ~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~-~~tvg~G~v~~v 480 (482)
+|+.|+++++|+|+.++.|+|..+..+ .+++++.+|+++..|+||++|++ .+|+|+|.|+..
T Consensus 276 ~l~~~~~~~~~~gt~~~~~~i~~l~~~--------------~~~l~l~~P~~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 276 PLLELQPYHIAHGMSVTTGKISLLDKG--------------IALLTLDAPLILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ccCCCCeEEEEEeceEEEEEEEEccCc--------------EEEEEECCceecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 789999999999999999999988531 77888999999999999999994 489999999864
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-52 Score=405.40 Aligned_cols=336 Identities=32% Similarity=0.494 Sum_probs=285.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
.|+.+||+++|||||+.+|++. ..|..++|.++|+|++..+.+++.+++.+.|||.|||++|+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 5899999999999999999865 458899999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEc
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISG 246 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~ 246 (482)
.++...|+++||||+++|+..||.||+.++..+|+++.++|+||+|+++.. +.+. .+++++..+.+ .+.+++++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~-r~e~---~i~~Il~~l~l--~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA-RIEQ---KIKQILADLSL--ANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH-HHHH---HHHHHHhhccc--cccccccc
Confidence 999999999999999999999999999999999999999999999999854 3333 33344444334 46788999
Q ss_pred chhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEE
Q 011581 247 SALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETV 326 (482)
Q Consensus 247 Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v 326 (482)
|+.+|+ |+++|.+.|.+....+.++.+.||+++||++|+++|.|||++|++.+|++++||++
T Consensus 143 s~~~g~------------------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L 204 (447)
T COG3276 143 SAKTGR------------------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKL 204 (447)
T ss_pred ccccCC------------------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEE
Confidence 999998 99999999998664567888999999999999999999999999999999999999
Q ss_pred EEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEeecCCCCCCCCC
Q 011581 327 DLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPF 406 (482)
Q Consensus 327 ~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i 406 (482)
++.|.++ .++|+|||.+++++++|.||++|+++|+|++.+++.|||+|+++++..+++.|++.+.+.... ..++
T Consensus 205 ~l~p~~k--~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l 278 (447)
T COG3276 205 YLSPINK--EVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTL 278 (447)
T ss_pred EEecCCC--eEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----cccc
Confidence 9999875 899999999999999999999999999999999999999999998888899999988876543 2589
Q ss_pred CCCCccEEEEeeeeeeeeEeeeecc-ccccccccCCCCEEEEEEEeCceEeeccCCeEEE
Q 011581 407 FAGYRPQFYMRTTDVTGRVSSIMND-KDEESKMVMPGDRIKMVVELIMPVACEQGMRFAI 465 (482)
Q Consensus 407 ~~g~~~~~~~~~~~~~~~i~~i~~~-~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfil 465 (482)
..|+.+++|+|..+++|+|..+... ...-.+.+..++...+.++...+.....|+|++.
T Consensus 279 ~~~~~~hi~~g~~~~~~~i~~l~~~~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl~ 338 (447)
T COG3276 279 KQGQPVHIHVGLRSVTGRIVPLEKNAELNLVKPIALGDNDRLVLRDNSAVIKLAGARVLS 338 (447)
T ss_pred CCCceEEEEEeccccceEeeeccccceeeeecccccccCceEEEEcccceeeeccceEEe
Confidence 9999999999999999999988642 0111123334444444444444444444444443
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-54 Score=404.57 Aligned_cols=409 Identities=24% Similarity=0.353 Sum_probs=340.2
Q ss_pred CCCCCCCCCCC--CCCcccccccceeeechhhHHH-----HHhhhhhhccCC------ceEEEEEecCCccHHHHHHHHH
Q 011581 40 KLTPSNLSSSF--LPPFATTTAVTVTTTRRRSLIV-----RAARGKFERKKP------HVNIGTIGHVDHGKTTLTAALT 106 (482)
Q Consensus 40 ~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------~~~I~i~G~~~~GKSTLi~~L~ 106 (482)
-|++.+|..|+ +++|++.+.+....+|++.... +.+.+.+.|+-| ..+++++|..|+|||||++.|+
T Consensus 109 GL~deemnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLT 188 (591)
T KOG1143|consen 109 GLTDEEMNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLT 188 (591)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeee
Confidence 45666777777 7899999999999999988763 456666766654 4789999999999999999999
Q ss_pred HhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEee-------------------cCCeEEEEEeCCCchhhHHHH
Q 011581 107 MALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYE-------------------TENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 107 ~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~-------------------~~~~~i~liDtPG~~~~~~~~ 165 (482)
....+.|++.++. ++.++++|...|-|-... ...|+ ...+-++|||.+||.+|.+++
T Consensus 189 QgeLDnG~GrARl--n~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TT 266 (591)
T KOG1143|consen 189 QGELDNGNGRARL--NIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTT 266 (591)
T ss_pred cccccCCCCeeee--ehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheee
Confidence 9888888877765 456677777766654332 22221 235678999999999999999
Q ss_pred Hhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC------
Q 011581 166 ITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP------ 237 (482)
Q Consensus 166 ~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~------ 237 (482)
+.++. .+|+++|||+|..|+...|+||+.++.++++| ++|+++|||+++.......+ +++.+++++.|+.
T Consensus 267 i~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~~~~~~~tv-~~l~nll~~~Gc~kvp~~V 344 (591)
T KOG1143|consen 267 IHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVDRQGLKKTV-KDLSNLLAKAGCTKVPKRV 344 (591)
T ss_pred eeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeeccccchhHHHHH-HHHHHHHhhcCccccceEe
Confidence 99996 57999999999999999999999999999999 88899999999864444444 4888888888763
Q ss_pred ---------------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC------CCCCCeeE
Q 011581 238 ---------------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR------QTDLPFLL 296 (482)
Q Consensus 238 ---------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~------~~~~~~~~ 296 (482)
++-+|++.+|...|+ |+ .|+..+.+.+++... ....|..|
T Consensus 345 t~~ddAv~Aaq~~~s~nivPif~vSsVsGe------------------gl-~ll~~fLn~Lsp~~~~~e~~~L~q~~~eF 405 (591)
T KOG1143|consen 345 TTKDDAVKAAQELCSGNIVPIFAVSSVSGE------------------GL-RLLRTFLNCLSPAGTAEERIQLVQLPAEF 405 (591)
T ss_pred echHHHHHHHHHhccCCceeEEEEeecCcc------------------ch-hHHHHHHhhcCCcCChHHHHHHhcCccee
Confidence 223455555555554 64 455555565654321 23458899
Q ss_pred EEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecC--CccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCe
Q 011581 297 AVEDVFSITGRGTVATGRVERGTIKVGETVDLVGL--KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374 (482)
Q Consensus 297 ~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~--~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 374 (482)
+|+++|.++.+|+|+.|.+.+|.++.|+.+.++|. |.|.+.+|.+|++++.++..+.|||.+.+.|..-+...+++||
T Consensus 406 qvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~d~D~~~LR~GM 485 (591)
T KOG1143|consen 406 QVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLNDPDGVSLRRGM 485 (591)
T ss_pred eHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCccceeeeccCCCccchhcce
Confidence 99999999999999999999999999999999986 6777999999999999999999999999999877777899999
Q ss_pred EEeCCC-CCCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEe-C
Q 011581 375 VLAKPG-TITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVEL-I 452 (482)
Q Consensus 375 vl~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~-~ 452 (482)
||..++ +|+.+..|+|++.+|-|. +.|..|++.++|+|+.+++|.|+.|.. .+++++|+++.|.|+| .
T Consensus 486 Vl~~~~~nP~~c~~F~A~~~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~-----~d~lrtg~~AvV~f~F~~ 555 (591)
T KOG1143|consen 486 VLAEIDHNPPVCYEFTANLLLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDD-----ADCLRTGKWAVVKFCFAY 555 (591)
T ss_pred EEeecCCCCceEEEEeeeehhhhhh-----HhheecceEEEEEcceeeeeeeeeecc-----cccccCCceEEEEEEecC
Confidence 999876 477789999999999885 579999999999999999999999974 4789999999999997 6
Q ss_pred ceEeeccCCeEEEeeCCcEEEEEEEeeecC
Q 011581 453 MPVACEQGMRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 453 ~p~~~~~~~rfilr~~~~tvg~G~v~~v~~ 482 (482)
+|+|+++|.+++||+ |.|.|+|.|++|.+
T Consensus 556 hPEyir~G~~ilfRe-G~tKGiG~Vt~Vfp 584 (591)
T KOG1143|consen 556 HPEYIREGSPILFRE-GKTKGIGEVTKVFP 584 (591)
T ss_pred CchhccCCCeeeeec-ccccccceEEEEEe
Confidence 899999999999998 79999999999853
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-45 Score=342.50 Aligned_cols=349 Identities=34% Similarity=0.523 Sum_probs=296.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-----------------
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET----------------- 145 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----------------- 145 (482)
++..||+++||+|||||||+.+|++. ..|++.+|.+||+||...+.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 57899999999999999999999875 458899999999999876542110
Q ss_pred ---------CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 146 ---------ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 146 ---------~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
--+++.|+|+|||+-...+|++++...|+++|||+|++ -+++||+||+..+.-.|++++|++-||+|+++
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 02568899999999999999999999999999999998 57899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCee
Q 011581 216 DEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295 (482)
Q Consensus 216 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~ 295 (482)
.++..+..+ ++++|++..- .++.|++|+||..+. +++.|+++|.+++|.|.++.+.|++
T Consensus 155 ~E~AlE~y~-qIk~FvkGt~--Ae~aPIIPiSA~~~~------------------NIDal~e~i~~~IptP~rd~~~~p~ 213 (415)
T COG5257 155 RERALENYE-QIKEFVKGTV--AENAPIIPISAQHKA------------------NIDALIEAIEKYIPTPERDLDKPPR 213 (415)
T ss_pred HHHHHHHHH-HHHHHhcccc--cCCCceeeehhhhcc------------------CHHHHHHHHHHhCCCCccCCCCCce
Confidence 776666554 8888988643 468999999999988 7899999999999999999999999
Q ss_pred EEEEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecC------C----ccceeEEEEEeecccccceeecCCe
Q 011581 296 LAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGL------K----ETRNFTVTGVEMFQKTLDEAMAGDN 357 (482)
Q Consensus 296 ~~I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~------~----~~~~~~V~~i~~~~~~v~~a~aG~~ 357 (482)
|+|.+.|.++- +|-|+.|.+.+|.+++||++.+.|. + +....+|.||+..+..+++|.||..
T Consensus 214 m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGL 293 (415)
T COG5257 214 MYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGL 293 (415)
T ss_pred EEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCce
Confidence 99999998763 5778999999999999999999984 1 1114679999999999999999999
Q ss_pred EEEEEc---cccccCcccCeEEeCCCCCCC-CceEEEEEEEeecCCC----CCCCCCCCCCccEEEEeeeeeeeeEeeee
Q 011581 358 VGLLLR---GVQKADIQRGMVLAKPGTITP-HTKFLAIVYVLKKEEG----GRHSPFFAGYRPQFYMRTTDVTGRVSSIM 429 (482)
Q Consensus 358 v~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~i~ 429 (482)
+++.-+ .+.+.|--.|.|+..++.+++ .++|+.+..+|+.--+ .+..||+.|...++.+|+...-+.|+...
T Consensus 294 vgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k 373 (415)
T COG5257 294 VGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAK 373 (415)
T ss_pred EEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEec
Confidence 999633 233467778999999988655 5689999999873211 12358999999999999999999999886
Q ss_pred ccccccccccCCCCEEEEEEEeCceEeeccCCeEEEee----CCcEEEEEEEee
Q 011581 430 NDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIRE----GGKTVGAGVIQS 479 (482)
Q Consensus 430 ~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~----~~~tvg~G~v~~ 479 (482)
.+ .+++.|.+|+|.+.|.|+.+.. .++.+|+|.|..
T Consensus 374 ~d--------------~~ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 374 KD--------------EIEVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred Cc--------------eEEEEeccceecCCCCEEEEEeeecceEEEEeEEEEec
Confidence 42 6788999999999999999932 369999999864
No 31
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.2e-42 Score=361.96 Aligned_cols=282 Identities=32% Similarity=0.423 Sum_probs=235.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+||+++||+|||||||+++|+..............+.+|..++|+++|+|+......++++++.++|||||||.+|..+
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 36999999999999999999997543322211122358899999999999999999999999999999999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC--Ccc
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD--DVP 242 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~~ 242 (482)
+..+++.+|+++||||+.+|+..||++++..+...++| +|+|+||||+.+. .++.+.+++.+++..++...+ .+|
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a--~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPSA--RPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc--CHHHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999999999999999999999999999 7899999999752 122334467777766554322 579
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeec
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKV 322 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~ 322 (482)
++++||++|++..... ....|+..|++.+.+.+|+|..+.+.||+++|.+++..++.|+++.|||.+|+|+.
T Consensus 158 vl~~SA~~g~~~~~~~--------~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~ 229 (594)
T TIGR01394 158 IVYASGRAGWASLDLD--------DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKK 229 (594)
T ss_pred EEechhhcCcccccCc--------ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEcc
Confidence 9999999997422110 11237889999999999999877889999999999999999999999999999999
Q ss_pred CCEEEEecC-CccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 323 GETVDLVGL-KETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 323 g~~v~i~p~-~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
||.|.+.+. ++....+|++|+.+ +.+++.|.|||+|+++ + ..++++||+||+++.
T Consensus 230 G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--g--l~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 230 GQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--G--LEDINIGETIADPEV 289 (594)
T ss_pred CCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--C--CcccCCCCEEeCCCc
Confidence 999999986 33335789999875 5689999999999986 3 467999999998764
No 32
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-40 Score=309.68 Aligned_cols=344 Identities=29% Similarity=0.472 Sum_probs=272.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---------CCeEEEEEeC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET---------ENRHYAHVDC 155 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------~~~~i~liDt 155 (482)
.+|++++||+|+|||||..+|... +. ....|.++..++||+|.+.....+.. +...++++|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~----~S-----TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL----GS-----TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDC 77 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh----cc-----chhhccCCcccccceeEeecceeeecccccccCccccceeEEEeC
Confidence 489999999999999999999632 22 12458899999999999988765532 2356799999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH---HHHHHHHHHHHHHh
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE---LLQLVELEVRELLS 232 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~---~~~~i~~~i~~~l~ 232 (482)
|||...+++.+.+....|..++|||+..|.+.||.|++-+...+..+ +|||+||+|...... ..++....+++-|+
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888777666 889999999886433 34445557778888
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEE
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVAT 312 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~ 312 (482)
..++. .+.|++++||..|.. -.+++.+|.+.|.+.+-.|.|+.+.||.|.|+++|.++|.|+|++
T Consensus 157 ~t~f~-g~~PI~~vsa~~G~~--------------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~T 221 (522)
T KOG0461|consen 157 STGFD-GNSPIVEVSAADGYF--------------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLT 221 (522)
T ss_pred hcCcC-CCCceeEEecCCCcc--------------chhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEe
Confidence 88885 569999999999841 112899999999999989999999999999999999999999999
Q ss_pred EEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEE
Q 011581 313 GRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIV 392 (482)
Q Consensus 313 G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v 392 (482)
|+|.+|.++.|+.+.+...+. .-+||+++++++++..|.+||++++.+...+..-+.|| +++.++.+.+....-+.+
T Consensus 222 GTvl~G~~~ln~~iE~PAL~e--~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~v 298 (522)
T KOG0461|consen 222 GTVLRGVLRLNTEIEFPALNE--KRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATV 298 (522)
T ss_pred eeEEEeEEecCcEEeecccch--hhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc-ccCCCcccceeeeeeEee
Confidence 999999999999999877665 45899999999999999999999999998888889998 456667666654433333
Q ss_pred EEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccc-----------------cccccccCCCCEEEEEEEeCceE
Q 011581 393 YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK-----------------DEESKMVMPGDRIKMVVELIMPV 455 (482)
Q Consensus 393 ~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~-----------------~~~~~~~~~g~~~~v~~~~~~p~ 455 (482)
-.+.-- +.+|..-...++-+|...+.+++.-+.... |.-|..+.+.|...+-+++++|+
T Consensus 299 epI~yf----r~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv 374 (522)
T KOG0461|consen 299 EPIQYF----RKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPV 374 (522)
T ss_pred cchHHH----hhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccc
Confidence 221100 124555555666667667777776654210 11233456677778888999998
Q ss_pred eeccC
Q 011581 456 ACEQG 460 (482)
Q Consensus 456 ~~~~~ 460 (482)
.+.++
T Consensus 375 ~~P~~ 379 (522)
T KOG0461|consen 375 FLPEY 379 (522)
T ss_pred cCccc
Confidence 87664
No 33
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=342.12 Aligned_cols=283 Identities=28% Similarity=0.368 Sum_probs=233.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..+||+++||+|+|||||+++|+..............+.+|..++|+++|+|+......+++++..++|||||||.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 46899999999999999999999753322221112236889999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC--CCc
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG--DDV 241 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~ 241 (482)
.+..+++.+|++|+|+|+.+|+..|++.++..+...++| .++++||+|+.+. .++.+.+++.+++..++... ..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a--~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK-PIVVINKVDRPGA--RPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCC-EEEEEECcCCCCC--chhHHHHHHHHHHhccCccccccCC
Confidence 999999999999999999999999999999999999999 6789999999752 22233346666665544322 358
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeee
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIK 321 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~ 321 (482)
|++++||++|++.+... ...+|+..|++.+.+.+|+|..+.+.||+++|++++..++.|++++|||++|+|+
T Consensus 161 PVi~~SA~~G~~~~~~~--------~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk 232 (607)
T PRK10218 161 PIVYASALNGIAGLDHE--------DMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVK 232 (607)
T ss_pred CEEEeEhhcCcccCCcc--------ccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCc
Confidence 99999999998432110 1123788999999999999987888999999999999999999999999999999
Q ss_pred cCCEEEEecC-CccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 322 VGETVDLVGL-KETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 322 ~g~~v~i~p~-~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
.||.|.+.+. ++....+|.+|+.. +.++++|.|||+|+++ ...++..||+||+++.
T Consensus 233 ~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GdTl~~~~~ 293 (607)
T PRK10218 233 PNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT----GLGELNISDTVCDTQN 293 (607)
T ss_pred CCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE----CccccccCcEEecCCC
Confidence 9999999876 43335788888755 4679999999999986 4577999999998764
No 34
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=316.41 Aligned_cols=285 Identities=30% Similarity=0.399 Sum_probs=237.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..+||+|+.|+|||||||+..|+.+..............||+...|++|||||-.....+.|++.+|+|+|||||.||-
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 45689999999999999999999987544333333334589999999999999988888888999999999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC--C
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD--D 240 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~--~ 240 (482)
.+..+.+...|+++|+|||.+|+.+||+-.+..+..+|.+ -|||+||+|+.+. +.+++.++..+++-.++-..+ +
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~A--rp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK-PIVVINKIDRPDA--RPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC-cEEEEeCCCCCCC--CHHHHHHHHHHHHHHhCCChhhCC
Confidence 9999999999999999999999999999999999999998 4689999999873 223344466677766665432 6
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeee
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTI 320 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l 320 (482)
+|++..||+.|+..+... .-...+..|++.|.+++|.|..+.++||.|+|...-..++.|.+..|||.+|++
T Consensus 160 FPivYAS~~~G~a~~~~~--------~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~v 231 (603)
T COG1217 160 FPIVYASARNGTASLDPE--------DEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTV 231 (603)
T ss_pred CcEEEeeccCceeccCcc--------ccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcc
Confidence 899999999998432111 011146789999999999999999999999999888888999999999999999
Q ss_pred ecCCEEEEecC-CccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCCCC
Q 011581 321 KVGETVDLVGL-KETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI 382 (482)
Q Consensus 321 ~~g~~v~i~p~-~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 382 (482)
++||.|.+... |.....+|..+.-+ +.++++|.|||+|+++ ...++..|+++|+++.+
T Consensus 232 k~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia----G~~~~~igdTi~d~~~~ 294 (603)
T COG1217 232 KPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA----GLEDINIGDTICDPDNP 294 (603)
T ss_pred cCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEc----CcccccccccccCCCCc
Confidence 99999999865 44447788888765 4679999999999987 45789999999998763
No 35
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-40 Score=323.53 Aligned_cols=270 Identities=28% Similarity=0.371 Sum_probs=223.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC---eEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN---RHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~liDtPG~~ 159 (482)
.+.+|++|+.|+|||||||..+|+...+.+... ......+|+.+.||+||||+......+-+.+ +.+++||||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 457899999999999999999999765433322 2234588999999999999988776665555 889999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
||..+..+.+..||++||||||++|++.||...+.++...|.. +|.|+||+|+...+ .+.++.++.+++. ++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad--pe~V~~q~~~lF~---~~-- 208 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD--PERVENQLFELFD---IP-- 208 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC--HHHHHHHHHHHhc---CC--
Confidence 9999999999999999999999999999999999999999998 89999999998732 2234446666553 33
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeee
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 319 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~ 319 (482)
.-+++.+||++|+ +++++|+++.+.+|+|....++||++.|.|.|...++|.++.++|..|.
T Consensus 209 ~~~~i~vSAK~G~------------------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~ 270 (650)
T KOG0462|consen 209 PAEVIYVSAKTGL------------------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGV 270 (650)
T ss_pred ccceEEEEeccCc------------------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeee
Confidence 2478999999999 8899999999999999999999999999999999999999999999999
Q ss_pred eecCCEEEEecCCccceeEEEEEeecc-cccceeecCCeEEEEEcccc-ccCcccCeEEeCCC
Q 011581 320 IKVGETVDLVGLKETRNFTVTGVEMFQ-KTLDEAMAGDNVGLLLRGVQ-KADIQRGMVLAKPG 380 (482)
Q Consensus 320 l~~g~~v~i~p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 380 (482)
+++||.|..+.+++.+.+++.+|...+ .++....|||..- .+.++. ..+.+.||++++..
T Consensus 271 vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGy-Ii~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 271 VRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGY-IICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred eecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccce-eEecccccccccccceeeecc
Confidence 999999999988877777777776654 3455555555222 222334 46789999998765
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=4.8e-38 Score=332.84 Aligned_cols=268 Identities=28% Similarity=0.427 Sum_probs=222.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-----CeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-----NRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPG~ 158 (482)
..+||+++||+|+|||||+++|+.......... ...+.+|..++|+++|+|+......+.+. ...++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 468999999999999999999997643332221 23467899999999999999877666542 367899999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+|...+..+++.+|++|+|+|++++...|+.+++..+...++| +++|+||+|+.+.. .+.+.+++.+.+ ++.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~~l---g~~- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEVI---GLD- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHHHh---CCC-
Confidence 99999999999999999999999999999999999888888998 88999999997532 112222444333 332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEee
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 318 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG 318 (482)
..+++++||++|. |+.+|+++|.+.+|+|..+.+.||+++|.+++.++++|++++|||.+|
T Consensus 154 -~~~vi~vSAktG~------------------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG 214 (595)
T TIGR01393 154 -ASEAILASAKTGI------------------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEG 214 (595)
T ss_pred -cceEEEeeccCCC------------------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECC
Confidence 2358999999998 899999999999999988889999999999999999999999999999
Q ss_pred eeecCCEEEEecCCccceeEEEEEeecc---cccceeecCCeEEEEEcccc-ccCcccCeEEeCCCC
Q 011581 319 TIKVGETVDLVGLKETRNFTVTGVEMFQ---KTLDEAMAGDNVGLLLRGVQ-KADIQRGMVLAKPGT 381 (482)
Q Consensus 319 ~l~~g~~v~i~p~~~~~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~ 381 (482)
+|+.||.|.+.+.+. ..+|.+|..++ .+++.+.||| +++.+.+++ ..++++||+|++.+.
T Consensus 215 ~lk~Gd~v~~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~~ 278 (595)
T TIGR01393 215 TIKPGDKIRFMSTGK--EYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVKN 278 (595)
T ss_pred EEecCCEEEEecCCC--eeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCCC
Confidence 999999999999865 67899988766 6789999999 666667764 378999999987653
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=6.2e-38 Score=332.25 Aligned_cols=269 Identities=28% Similarity=0.420 Sum_probs=222.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-----CeEEEEEeCCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-----NRHYAHVDCPG 157 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPG 157 (482)
...+||+++||+|+|||||+++|+......... ....+.+|..++|+++|+|+......+.+. +..++||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~-~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSER-EMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccc-ccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 457899999999999999999998754332221 123568899999999999998877666543 57899999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
|.+|...+.++++.+|++|+|||+++|+..|+.+++..+...++| +|+|+||+|+.+.. .+.+.+++.+. ++++
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIEDV---IGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHHH---hCCC
Confidence 999999999999999999999999999999999999988888999 88999999997532 12222244433 2332
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEe
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 317 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~s 317 (482)
...++++||++|. |+.+|+++|.+.+|+|..+.+.||++.|.+++..+++|++++|||.+
T Consensus 158 --~~~vi~iSAktG~------------------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~s 217 (600)
T PRK05433 158 --ASDAVLVSAKTGI------------------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVD 217 (600)
T ss_pred --cceEEEEecCCCC------------------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEc
Confidence 2358999999998 89999999999999998888999999999999999999999999999
Q ss_pred eeeecCCEEEEecCCccceeEEEEEeec---ccccceeecCCeEEEEEcccc-ccCcccCeEEeCCCC
Q 011581 318 GTIKVGETVDLVGLKETRNFTVTGVEMF---QKTLDEAMAGDNVGLLLRGVQ-KADIQRGMVLAKPGT 381 (482)
Q Consensus 318 G~l~~g~~v~i~p~~~~~~~~V~~i~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~~ 381 (482)
|+|+.||.|++.+.+. ..+|.+|... ..+++.+.||| +++.+.+++ ..++++||+|++.+.
T Consensus 218 G~Lk~Gd~i~~~~~~~--~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~~ 282 (600)
T PRK05433 218 GTLKKGDKIKMMSTGK--EYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAKN 282 (600)
T ss_pred CEEecCCEEEEecCCc--eEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCCC
Confidence 9999999999999865 6788888765 36799999999 555555654 468999999987653
No 38
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-37 Score=303.18 Aligned_cols=271 Identities=25% Similarity=0.383 Sum_probs=222.4
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-----CCeEEEEEeCC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-----ENRHYAHVDCP 156 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~liDtP 156 (482)
.+..+|++|+.|.|||||||..+|+........ .......+|++..|++||+|+......+.+ +.+.++|||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~-Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSE-REMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcCh-HHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 456789999999999999999999865433222 222345789999999999999877665543 34778999999
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
||.||..+..+++..|.+++|||||++|++.||.....++...+.. +|.|+||+|++..+ .+.++.++.+.+ |+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~i---Gi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDII---GI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHHHh---CC
Confidence 9999999999999999999999999999999999999999999998 99999999998732 122334666554 55
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEE
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 316 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~ 316 (482)
+. -..+.+||++|. |++++|+++.+.+|+|..+.+.|++..|.|.|..+++|.|+..||.
T Consensus 159 d~--~dav~~SAKtG~------------------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~ 218 (603)
T COG0481 159 DA--SDAVLVSAKTGI------------------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIF 218 (603)
T ss_pred Cc--chheeEecccCC------------------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEe
Confidence 43 346889999999 9999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCEEEEecCCccceeEEEEEeecc-cccceeecCCeEEEEEcccc-ccCcccCeEEeCCC
Q 011581 317 RGTIKVGETVDLVGLKETRNFTVTGVEMFQ-KTLDEAMAGDNVGLLLRGVQ-KADIQRGMVLAKPG 380 (482)
Q Consensus 317 sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 380 (482)
.|++++||++.++.+|+.+.+.-.++.... .+.+...+||. |....+++ ..+.+.||++....
T Consensus 219 dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeV-G~~~a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 219 DGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEV-GYIIAGIKDVRDARVGDTITLAS 283 (603)
T ss_pred eceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCce-eEEEEeeeecccCcccceEeccC
Confidence 999999999999999875544444555443 45778999984 44444444 37899999998544
No 39
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=7.5e-36 Score=274.36 Aligned_cols=195 Identities=77% Similarity=1.181 Sum_probs=173.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
++++|+++||+|+|||||+++|++.....|+.....++.+|..++|+++|+|++.....|++++..++|+|||||.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 46899999999999999999999887666655434446789999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccE
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPI 243 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 243 (482)
++..++..+|++++|||+..|+..|+++++.++...++|++|+|+||||+...++..+.++++++++++.++++..++|+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 99999999999999999999999999999999999999878899999999876667777888999999999998778999
Q ss_pred EEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 244 ISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 244 i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
+|+||++|.|.. ...+||+++..|+++|++..|+|
T Consensus 161 ipiSa~~g~n~~--------~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGD--------DPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCC--------CCCcchhcHhHHHHHHHhCCCCC
Confidence 999999998521 13589998899999999877654
No 40
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=9.9e-35 Score=316.47 Aligned_cols=298 Identities=29% Similarity=0.413 Sum_probs=221.8
Q ss_pred hhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec----CCeEEE
Q 011581 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET----ENRHYA 151 (482)
Q Consensus 76 ~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~ 151 (482)
...+.+....+||+++||+|+|||||+++|+..............+.+|..++|++||+|++.+...+.+ +++.++
T Consensus 11 ~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 11 LELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred HHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 3344555678999999999999999999999764433322222346789999999999999987665544 477899
Q ss_pred EEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC------hH---HHHHH
Q 011581 152 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DE---ELLQL 222 (482)
Q Consensus 152 liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~------~~---~~~~~ 222 (482)
|+|||||.+|..++..+++.+|++|+|||+..|+..||+.+++.+...++| .|+++||||+.. .+ +.+..
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 169 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLK 169 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999889999 688999999863 11 22333
Q ss_pred HHHHHHHHHhhcC---------CCCCCccEEEcchhhhHHHhhc----CC-Cc-------ccCc----chhhhhHHHHHH
Q 011581 223 VELEVRELLSSYE---------FPGDDVPIISGSALLALEALMA----NP-SI-------KRGE----NQWVDKIYELMD 277 (482)
Q Consensus 223 i~~~i~~~l~~~~---------~~~~~~~~i~~Sa~~g~~~~~~----~~-~~-------~~~~----~~w~~gi~~Ll~ 277 (482)
+..++..++..+. +...+-.+++.|++.++..... .. .. ..+. ..|+--+..||+
T Consensus 170 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld 249 (731)
T PRK07560 170 IIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLD 249 (731)
T ss_pred HHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHH
Confidence 3345555555442 1122234667788876532100 00 00 0000 011111237899
Q ss_pred HhhhcCCCCCC-------------------------CCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCC
Q 011581 278 SVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLK 332 (482)
Q Consensus 278 ~l~~~l~~~~~-------------------------~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~ 332 (482)
.+.+++|+|.. +.+.||.+.|.+++..+++|++++|||.+|+|+.||.|++.+.+
T Consensus 250 ~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~ 329 (731)
T PRK07560 250 MVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK 329 (731)
T ss_pred HHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC
Confidence 99999999842 23458999999999999999999999999999999999998875
Q ss_pred ccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 333 ETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 333 ~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
. ..+|..|+.. ..+++.|.|||++++. + ..++.+||+|++++
T Consensus 330 ~--~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--g--l~~~~~GdtL~~~~ 375 (731)
T PRK07560 330 K--KNRVQQVGIYMGPEREEVEEIPAGNIAAVT--G--LKDARAGETVVSVE 375 (731)
T ss_pred C--ceEeheehhhhcCCCceeeeECCCCEEEEE--c--ccccccCCEEeCCC
Confidence 4 5688888765 3679999999999985 3 35678999998764
No 41
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.5e-33 Score=305.50 Aligned_cols=284 Identities=24% Similarity=0.326 Sum_probs=212.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhc---CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASL---GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
...+||+++||+|+|||||+++|+...... |.. ....+.+|..++|+++|+|++.....+++.++.++|+|||||.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v-~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEV-HDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-cCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 347899999999999999999998654322 221 1235688999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
+|..++..++..+|++|+|||+.+|+..||++++.++...++| .|+++||||+.+.+ .. .+.+++++.+....
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-~~-~~~~~i~~~l~~~~---- 159 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-FY-RVVEQIKDRLGANP---- 159 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC-HH-HHHHHHHHHhCCCe----
Confidence 9999999999999999999999999999999999999999999 67899999998633 22 22234444443211
Q ss_pred CccEEEcchhhhHH---------------------------------------------------Hhh----cCCCcccC
Q 011581 240 DVPIISGSALLALE---------------------------------------------------ALM----ANPSIKRG 264 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~---------------------------------------------------~~~----~~~~~~~~ 264 (482)
..+.+|+|+..+.. .++ ....+...
T Consensus 160 ~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~ 239 (693)
T PRK00007 160 VPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEE 239 (693)
T ss_pred eeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHH
Confidence 12233333333200 000 00000000
Q ss_pred c-----------chh----------hhhHHHHHHHhhhcCCCCCC--------------------CCCCCeeEEEEeEEe
Q 011581 265 E-----------NQW----------VDKIYELMDSVDSYIPIPQR--------------------QTDLPFLLAVEDVFS 303 (482)
Q Consensus 265 ~-----------~~w----------~~gi~~Ll~~l~~~l~~~~~--------------------~~~~~~~~~I~~v~~ 303 (482)
+ ..| ..|+..||+.|.+++|+|.. +.+.||.++|.++..
T Consensus 240 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~ 319 (693)
T PRK00007 240 EIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMT 319 (693)
T ss_pred HHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeee
Confidence 0 011 12789999999999998842 125689999999988
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCC
Q 011581 304 ITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKP 379 (482)
Q Consensus 304 v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 379 (482)
.++.|.+.++||.+|+|+.||.|+....++ ..+|..|... ..++++|.|||++++. |+ .+++.||+|++.
T Consensus 320 d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~--~eki~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~GdtL~~~ 393 (693)
T PRK00007 320 DPFVGKLTFFRVYSGVLESGSYVLNSTKGK--KERIGRILQMHANKREEIKEVRAGDIAAAV--GL--KDTTTGDTLCDE 393 (693)
T ss_pred cCCCCcEEEEEEeeeEEcCCCEEEeCCCCc--eeEeceeEEeccCCcccccccCCCcEEEEe--CC--ccCCcCCEeeCC
Confidence 888999999999999999999998654433 4577777765 3679999999999985 33 457899999875
Q ss_pred C
Q 011581 380 G 380 (482)
Q Consensus 380 ~ 380 (482)
+
T Consensus 394 ~ 394 (693)
T PRK00007 394 K 394 (693)
T ss_pred C
Confidence 4
No 42
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.9e-33 Score=291.99 Aligned_cols=269 Identities=28% Similarity=0.421 Sum_probs=211.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh---cCCCC---CcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS---LGNSA---PKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 156 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~---~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtP 156 (482)
...+||+++||+|+|||||+++|+..... .|... ......+|..+.|+++|+|+......++++++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 45789999999999999999999864322 22211 1122346889999999999999999999999999999999
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH--HHHHHHHHHHHHHHhhc
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLQLVELEVRELLSSY 234 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~--~~~~~i~~~i~~~l~~~ 234 (482)
||.+|...+..+++.+|++|+|+|+.+|+..+++..+..+...++| +++++||+|+...+ +..+ ++++.+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~~~l~----~i~~~l~~~ 162 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPLELLD----EIEEVLGIA 162 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccCHHHHHH----HHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999 88999999987522 2222 222222110
Q ss_pred C-------------------------------------------------------------------------------
Q 011581 235 E------------------------------------------------------------------------------- 235 (482)
Q Consensus 235 ~------------------------------------------------------------------------------- 235 (482)
.
T Consensus 163 ~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~ 242 (526)
T PRK00741 163 CAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEA 242 (526)
T ss_pred CeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHH
Confidence 0
Q ss_pred -CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCC---------CCCCeeEEEEeEE---
Q 011581 236 -FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ---------TDLPFLLAVEDVF--- 302 (482)
Q Consensus 236 -~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~---------~~~~~~~~I~~v~--- 302 (482)
..+.-+|++..||+++. |+..||+.+.+++|+|... .+.+|...|..+.
T Consensus 243 ~~~~~~~PV~~GSA~~n~------------------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m 304 (526)
T PRK00741 243 FLAGELTPVFFGSALNNF------------------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANM 304 (526)
T ss_pred HhcCCeEEEEEeecccCc------------------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecC
Confidence 00112566666666666 9999999999999988531 2356788766665
Q ss_pred eeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeC
Q 011581 303 SITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAK 378 (482)
Q Consensus 303 ~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 378 (482)
..+++|++.+.||.||+++.|+.|++...++ ..++..++.. +..+++|.|||++++. +..+++.||+|++
T Consensus 305 ~~~~~grlafvRV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~ 378 (526)
T PRK00741 305 DPKHRDRIAFVRVCSGKFEKGMKVRHVRTGK--DVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQ 378 (526)
T ss_pred CCCcCceEEEEEEeccEECCCCEEEeccCCc--eEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccC
Confidence 2358899999999999999999999887765 5677776654 3579999999999997 6678999999987
Q ss_pred CC
Q 011581 379 PG 380 (482)
Q Consensus 379 ~~ 380 (482)
.+
T Consensus 379 ~~ 380 (526)
T PRK00741 379 GE 380 (526)
T ss_pred CC
Confidence 65
No 43
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-33 Score=299.09 Aligned_cols=290 Identities=27% Similarity=0.371 Sum_probs=216.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCC--CCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCc
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGN--SAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGH 158 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~ 158 (482)
....+||+|+||+|||||||.++|+...+.+.+ ........+|..+.|++||+|+..+...+.|++ +.|+|||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 356789999999999999999999976544433 111224588999999999999999999999995 99999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc----
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY---- 234 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~---- 234 (482)
.||..++.++++.+|+||+|+||.+|+++||...|+++...++| .++++||||+...+ +.. ..+++.+.|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~-~~~-~~~~l~~~l~~~~~~v 163 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVP-RILFVNKMDRLGAD-FYL-VVEQLKERLGANPVPV 163 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCC-eEEEEECccccccC-hhh-hHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999 57899999998732 111 112333333221
Q ss_pred C----------------------CC-CCCccEEEcc-hhhhHH----------------Hhhc---CC-C----------
Q 011581 235 E----------------------FP-GDDVPIISGS-ALLALE----------------ALMA---NP-S---------- 260 (482)
Q Consensus 235 ~----------------------~~-~~~~~~i~~S-a~~g~~----------------~~~~---~~-~---------- 260 (482)
+ |. +....++.+. .+.+.+ .+++ .. .
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 0 00 1111122221 112211 1111 00 0
Q ss_pred --------cc---cCcchhhhhHHHHHHHhhhcCCCCCC--------------------CCCCCeeEEEEeEEeeCCCce
Q 011581 261 --------IK---RGENQWVDKIYELMDSVDSYIPIPQR--------------------QTDLPFLLAVEDVFSITGRGT 309 (482)
Q Consensus 261 --------~~---~~~~~w~~gi~~Ll~~l~~~l~~~~~--------------------~~~~~~~~~I~~v~~v~g~G~ 309 (482)
+. -+...-..|++.||+++..++|.|.+ +.+.||.+.+.++...+..|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 00 01111124899999999999998832 236899999999999999999
Q ss_pred EEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 310 VATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 310 v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
+.++||.||+|+.||.+++...++ +.+|..|...+ .+++.+.|||++++. ...+...|++||+..
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~--~erv~~l~~~~~~~~~~v~~~~AG~I~a~~----Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGK--KERVGRLLLMHGNEREEVDEVPAGDIVALV----GLKDATTGDTLCDEN 392 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCc--cEEEEEEEEccCCceeecccccCccEEEEE----cccccccCCeeecCC
Confidence 999999999999999998876553 67888887654 569999999999986 445679999999765
No 44
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=3e-33 Score=303.41 Aligned_cols=283 Identities=24% Similarity=0.348 Sum_probs=211.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
..+||+|+||+|+|||||+++|+..... .|.. ....+.+|..++|+++|+|++.....++++++.++|||||||.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEV-HDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccc-cCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4789999999999999999999875332 2211 12356889999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
|..++..+++.+|++|+|||+.+|+..|+++++..+...++| +|+++||||+...+ . +.+.+++++.+....+
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-~-~~~~~~i~~~l~~~~~---- 158 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-F-FRSVEQIKDRLGANAV---- 158 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-H-HHHHHHHHHHhCCCce----
Confidence 999999999999999999999999999999999999999999 67899999998632 2 2222345444432110
Q ss_pred ccEEEcchhhhHHH---------------------------------------------------hh----cCCCcccCc
Q 011581 241 VPIISGSALLALEA---------------------------------------------------LM----ANPSIKRGE 265 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~---------------------------------------------------~~----~~~~~~~~~ 265 (482)
...+|+|+..+.+. +. ....+...+
T Consensus 159 ~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~ 238 (691)
T PRK12739 159 PIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEE 238 (691)
T ss_pred eEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHH
Confidence 01122222111100 00 000000000
Q ss_pred -----------chh----------hhhHHHHHHHhhhcCCCCCC-------------------CCCCCeeEEEEeEEeeC
Q 011581 266 -----------NQW----------VDKIYELMDSVDSYIPIPQR-------------------QTDLPFLLAVEDVFSIT 305 (482)
Q Consensus 266 -----------~~w----------~~gi~~Ll~~l~~~l~~~~~-------------------~~~~~~~~~I~~v~~v~ 305 (482)
..| ..|+..||+.|.+++|+|.. +.+.||.++|.+++..+
T Consensus 239 l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~ 318 (691)
T PRK12739 239 IKAAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDP 318 (691)
T ss_pred HHHHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCC
Confidence 000 12789999999999998742 23568999999999888
Q ss_pred CCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 306 GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 306 g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
++|.+.++||.+|+|+.||.|+....++ ..+|..|... ..+++++.|||++++. ++ .+++.||+|++.+
T Consensus 319 ~~G~i~~~RV~sGtL~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl~~~~ 391 (691)
T PRK12739 319 FVGRLTFFRVYSGVLESGSYVLNTTKGK--KERIGRLLQMHANKREEIKEVYAGDIAAAV--GL--KDTTTGDTLCDEK 391 (691)
T ss_pred CCCeEEEEEEeeeEEcCCCEEEeCCCCc--eEEecceEEEecCCcccccccCCCCEEEEe--CC--CcccCCCEEeCCC
Confidence 8999999999999999999997665443 5577777654 3579999999999987 33 4578999998764
No 45
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=9.4e-33 Score=288.24 Aligned_cols=269 Identities=25% Similarity=0.379 Sum_probs=209.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCC---cccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAP---KKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 156 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtP 156 (482)
...+||+++||+|+|||||+++|+..... .|.... .....+|..+.|+++|+|+......+++.+..++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45789999999999999999999754322 222111 112457899999999999999999999999999999999
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC--hHHHHHHHHHHHHHHHhhc
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--DEELLQLVELEVRELLSSY 234 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~i~~~i~~~l~~~ 234 (482)
||.+|...+..+++.+|++|+|||+.+++..++..+++.+...++| +++++||+|+.. .++..+ ++++.+...
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~~ll~----~i~~~l~~~ 163 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPLELLD----EVENELKIN 163 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCCHHHHHH----HHHHHhCCC
Confidence 9999999999999999999999999999999999999999988999 889999999864 223333 334333321
Q ss_pred CCC-----------------------------------------------------------------------------
Q 011581 235 EFP----------------------------------------------------------------------------- 237 (482)
Q Consensus 235 ~~~----------------------------------------------------------------------------- 237 (482)
.++
T Consensus 164 ~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~ 243 (527)
T TIGR00503 164 CAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAA 243 (527)
T ss_pred CccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHH
Confidence 110
Q ss_pred ---CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCC---------CCCCeeEEEEeEEe--
Q 011581 238 ---GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ---------TDLPFLLAVEDVFS-- 303 (482)
Q Consensus 238 ---~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~---------~~~~~~~~I~~v~~-- 303 (482)
+.-+|++..||+++. |+..||+.+..++|+|... .+.+|...|.++..
T Consensus 244 ~~~~~~~PV~~GSA~~n~------------------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~m 305 (527)
T TIGR00503 244 FHGGEMTPVFFGTALGNF------------------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANM 305 (527)
T ss_pred HhcCCeeEEEEeecccCc------------------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEecc
Confidence 011222333333322 8999999999999988532 24578888777764
Q ss_pred e-CCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeC
Q 011581 304 I-TGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAK 378 (482)
Q Consensus 304 v-~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 378 (482)
. +++|++.+.||.||+++.|++|++...++ ..++..++.. +..+++|.|||++++. +..+++.||+||+
T Consensus 306 dp~~~griaf~RV~sG~l~~g~~v~~~~~~k--~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~ 379 (527)
T TIGR00503 306 DPKHRDRVAFMRVVSGKYEKGMKLKHVRTGK--DVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQ 379 (527)
T ss_pred CcccCceEEEEEEeeeEEcCCCEEEecCCCC--cEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecC
Confidence 4 48999999999999999999998887765 6688777654 3579999999999986 6678999999987
Q ss_pred CC
Q 011581 379 PG 380 (482)
Q Consensus 379 ~~ 380 (482)
.+
T Consensus 380 ~~ 381 (527)
T TIGR00503 380 GE 381 (527)
T ss_pred CC
Confidence 54
No 46
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=8.4e-33 Score=297.48 Aligned_cols=247 Identities=31% Similarity=0.352 Sum_probs=198.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++||+|+|||||+++|.+... .....+|+|++.....++++++.++|||||||++|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v----------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV----------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc----------------cccccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 3567899999999999999999964211 112246889888888888888999999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHH---HHhhcCCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE---LLSSYEFPGD 239 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~---~l~~~~~~~~ 239 (482)
.++.+++..+|++|||||+++|..+||.+++..+...++| +||++||||+.+.+ .+.+..++.+ +.+.+ +.
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~---g~ 425 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEW---GG 425 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHh---CC
Confidence 9999999999999999999999999999999999999999 89999999997532 1112222222 11122 23
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC--CCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEe
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI--PIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 317 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l--~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~s 317 (482)
.+|++++||++|. |+.+|+++|.... .....+.+.++++.|.+++..+|+|++++|+|.+
T Consensus 426 ~vp~vpvSAktG~------------------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~s 487 (787)
T PRK05306 426 DTIFVPVSAKTGE------------------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQN 487 (787)
T ss_pred CceEEEEeCCCCC------------------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEec
Confidence 5899999999998 8888888876421 1123445678999999999999999999999999
Q ss_pred eeeecCCEEEEecCCccceeEEEEEeec-ccccceeecCCeEEEEEccccccCc-ccCeEEe
Q 011581 318 GTIKVGETVDLVGLKETRNFTVTGVEMF-QKTLDEAMAGDNVGLLLRGVQKADI-QRGMVLA 377 (482)
Q Consensus 318 G~l~~g~~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~ 377 (482)
|+|+.||.|.+++ ...+|++++.. +..++.|.||+.|.+. ...++ ..||+|+
T Consensus 488 GtLk~Gd~vv~g~----~~gkVr~m~~~~~~~v~~A~pGd~V~I~----gl~~~p~~Gd~l~ 541 (787)
T PRK05306 488 GTLKVGDIVVAGT----TYGRVRAMVDDNGKRVKEAGPSTPVEIL----GLSGVPQAGDEFV 541 (787)
T ss_pred CeEecCCEEEECC----cEEEEEEEECCCCCCCCEEcCCCeEEEe----CCCCCCCCCCEEE
Confidence 9999999998864 25799999974 5789999999999986 33455 7899997
No 47
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=2e-32 Score=297.14 Aligned_cols=285 Identities=25% Similarity=0.323 Sum_probs=211.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCC--CCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNS--APKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
...+||+|+||+|+|||||+++|+......... .....+.+|..+.|+++|+|++.....+++++..++|||||||.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 347899999999999999999998754332110 112346889999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
|..++..+++.+|++|+|+|+.+|...++.+++..+...++| +++++||+|+...+ ++.+.+++++.+....+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~---- 160 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN--FLRVVNQIKQRLGANAV---- 160 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCce----
Confidence 999999999999999999999999999999999999999999 67899999998632 12222345444432111
Q ss_pred ccEEEcchhhhHHH--------------------------------------------------hh----cCCCccc---
Q 011581 241 VPIISGSALLALEA--------------------------------------------------LM----ANPSIKR--- 263 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~--------------------------------------------------~~----~~~~~~~--- 263 (482)
...+|+|+..+... ++ +...+..
T Consensus 161 ~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l 240 (689)
T TIGR00484 161 PIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEI 240 (689)
T ss_pred eEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHH
Confidence 11233333222100 00 0000000
Q ss_pred ------------------CcchhhhhHHHHHHHhhhcCCCCCC-------------------CCCCCeeEEEEeEEeeCC
Q 011581 264 ------------------GENQWVDKIYELMDSVDSYIPIPQR-------------------QTDLPFLLAVEDVFSITG 306 (482)
Q Consensus 264 ------------------~~~~w~~gi~~Ll~~l~~~l~~~~~-------------------~~~~~~~~~I~~v~~v~g 306 (482)
+...-..|+..||+.|..++|+|.. +.+.||.++|.+++..++
T Consensus 241 ~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 320 (689)
T TIGR00484 241 KNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPF 320 (689)
T ss_pred HHHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCC
Confidence 0000012789999999999998742 125689999999998899
Q ss_pred CceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 307 RGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 307 ~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
.|.+.++||.+|+|+.||.|+....++ ..+|..|... ..+++++.|||++++. |+ .++..||+|++.+
T Consensus 321 ~G~i~~~RV~sGtL~~g~~v~~~~~~~--~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl~~~~ 392 (689)
T TIGR00484 321 VGQLTFVRVYSGVLKSGSYVKNSRKNK--KERVGRLVKMHANNREEIKEVRAGDICAAI--GL--KDTTTGDTLCDPK 392 (689)
T ss_pred CCeEEEEEEEEeEEcCCCEEEeCCCCc--eEEecceEEeecCCcccccccCCCCEEEEc--CC--CCCCCCCEEeCCC
Confidence 999999999999999999998765443 4567677654 3579999999999985 33 4678999998764
No 48
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=2.3e-32 Score=288.06 Aligned_cols=245 Identities=31% Similarity=0.374 Sum_probs=195.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe-EEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR-HYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPG~~~~~ 162 (482)
..++|+++||+|+|||||+++|.+.. ......+|+|++.....+++.+. .++|||||||++|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~----------------v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK----------------VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC----------------cccccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 45789999999999999999997531 11122467888887777777554 89999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC----C
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP----G 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~----~ 238 (482)
..+.+++..+|++|+|+|+++|..+||.+++..+...++| +|+++||+|+.+.. .+.+..++. .+++. +
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L~----~~g~~~~~~~ 222 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQELS----EYGLVPEDWG 222 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHHH----HhhhhHHhcC
Confidence 9999999999999999999999999999999999999999 89999999996521 111111222 22211 1
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc--CCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEE
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY--IPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVE 316 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~--l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~ 316 (482)
...+++++||++|. |+.+|+++|... +.....+.+.|+++.|.+++.++|+|++++|+|.
T Consensus 223 ~~~~~v~iSAktGe------------------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~ 284 (587)
T TIGR00487 223 GDTIFVPVSALTGD------------------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQ 284 (587)
T ss_pred CCceEEEEECCCCC------------------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEE
Confidence 34789999999998 888998888542 2223334568999999999999999999999999
Q ss_pred eeeeecCCEEEEecCCccceeEEEEEee-cccccceeecCCeEEEEEccccccCc-ccCeEEe
Q 011581 317 RGTIKVGETVDLVGLKETRNFTVTGVEM-FQKTLDEAMAGDNVGLLLRGVQKADI-QRGMVLA 377 (482)
Q Consensus 317 sG~l~~g~~v~i~p~~~~~~~~V~~i~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~ 377 (482)
+|+|++||.+.++|. ..+|++++. ++..+++|.||+.|.+. |+ .++ ..||.+.
T Consensus 285 ~GtL~~Gd~iv~~~~----~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl--~~~p~aGd~~~ 339 (587)
T TIGR00487 285 SGTLRVGDIVVVGAA----YGRVRAMIDENGKSVKEAGPSKPVEIL--GL--SDVPAAGDEFI 339 (587)
T ss_pred eCEEeCCCEEEECCC----ccEEEEEECCCCCCCCEECCCCEEEEe--CC--CCCCCCCCEEE
Confidence 999999999988774 468999998 56789999999999886 33 234 6788886
No 49
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-33 Score=268.28 Aligned_cols=272 Identities=26% Similarity=0.402 Sum_probs=212.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh---HHhcCCCCC---cccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA---LASLGNSAP---KKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~---~~~~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
.++++|+-|+|+|||||.+.|+-. +...|.... ......|.++.|++|||++..+...|++.++.++|+|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 468999999999999999999843 333333222 22345688999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC--hHHHHHHHHHHHHHHHhhcC-
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD--DEELLQLVELEVRELLSSYE- 235 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~i~~~i~~~l~~~~- 235 (482)
+||...+++-+..+|.||+||||..|+.+||+..++.|+..++| |+-++||+|+.. +-++.+++++++.-....+.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitW 170 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPITW 170 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceecccc
Confidence 99999999999999999999999999999999999999999999 999999999875 33444433332210000000
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q 011581 236 ---------------------------------------------------------------------------FPGDD 240 (482)
Q Consensus 236 ---------------------------------------------------------------------------~~~~~ 240 (482)
+.+..
T Consensus 171 PIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~ 250 (528)
T COG4108 171 PIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGEL 250 (528)
T ss_pred cccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCc
Confidence 11234
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCC---------CC---CCeeEEEEeEEeeCCCc
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ---------TD---LPFLLAVEDVFSITGRG 308 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~---------~~---~~~~~~I~~v~~v~g~G 308 (482)
.|+++.||+.+. |++.+|+.+.++-|+|... .+ .-|.|-|+--...+++.
T Consensus 251 TPVFFGSAl~NF------------------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 251 TPVFFGSALGNF------------------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred cceEehhhhhcc------------------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCccccc
Confidence 566666666665 9999999999999887431 12 24556666666667899
Q ss_pred eEEEEEEEeeeeecCCEEEEecCCccceeEEEEEee----cccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 309 TVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEM----FQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 309 ~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
++++.||.||.+..|+++.+..+|+ .+++..-+. .++.++.|.|||++||. +...++.||+++..+.
T Consensus 313 RIAFmRv~SGkferGMkv~h~rtGK--~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~IGDT~t~Ge~ 383 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVTHVRTGK--DVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGEK 383 (528)
T ss_pred ceeEEEeccccccCCceeeeeecCC--ceEecchHhhhhhhhhhhhhccCCCeEecc----CCCceeecceeecCce
Confidence 9999999999999999999998876 566666543 24679999999999997 4566999999987653
No 50
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.3e-31 Score=289.55 Aligned_cols=270 Identities=29% Similarity=0.437 Sum_probs=212.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCC--CCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNS--APKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..+||+++||+|+|||||+++|+......... .....+.+|..+.|+++|+|+......+++.+..++|||||||.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 46899999999999999999998653321110 0112346788899999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC------
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE------ 235 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~------ 235 (482)
...+..+++.+|++++|+|++++...++.+++..+...++| +++|+||+|+...+ ..+ ..+++++.+....
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~-~~~-~~~~i~~~l~~~~~~~~~P 163 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGAD-LFK-VLEDIEERFGKRPLPLQLP 163 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC-HHH-HHHHHHHHHCCCeEEEEec
Confidence 99999999999999999999999999999999999999999 77899999988631 111 1113332222100
Q ss_pred ----------------------------------------------------------------------C---------
Q 011581 236 ----------------------------------------------------------------------F--------- 236 (482)
Q Consensus 236 ----------------------------------------------------------------------~--------- 236 (482)
+
T Consensus 164 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~ 243 (687)
T PRK13351 164 IGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPL 243 (687)
T ss_pred cccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHH
Confidence 0
Q ss_pred -----CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC------------------CCCCC
Q 011581 237 -----PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR------------------QTDLP 293 (482)
Q Consensus 237 -----~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~------------------~~~~~ 293 (482)
...-+|++.+||++|. |+..||+.|.+++|.|.. +.+.|
T Consensus 244 ~~~~~~~~~~PV~~gSA~~~~------------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p 305 (687)
T PRK13351 244 REGTRSGHLVPVLFGSALKNI------------------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKP 305 (687)
T ss_pred HHHHHhCCEEEEEecccCcCc------------------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCC
Confidence 0113556666666665 899999999999998852 23568
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccC
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKAD 369 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~ 369 (482)
+.+.|.+++..+++|.++++||.+|+|+.||.|++.+.++ ..+|..|... ..++++|.|||++++. + ..+
T Consensus 306 l~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~--~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~--g--l~~ 379 (687)
T PRK13351 306 LLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGK--REKVGRLFRLQGNKREEVDRAKAGDIVAVA--G--LKE 379 (687)
T ss_pred eEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCC--ceEeeeEEEEccCCeeECCccCCCCEEEEE--C--ccc
Confidence 9999999999999999999999999999999999987654 5567777654 3679999999999875 3 346
Q ss_pred cccCeEEeCCC
Q 011581 370 IQRGMVLAKPG 380 (482)
Q Consensus 370 i~~G~vl~~~~ 380 (482)
+..|++|++.+
T Consensus 380 ~~~gdtl~~~~ 390 (687)
T PRK13351 380 LETGDTLHDSA 390 (687)
T ss_pred CccCCEEeCCC
Confidence 77899998754
No 51
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.6e-31 Score=290.59 Aligned_cols=297 Identities=28% Similarity=0.385 Sum_probs=213.1
Q ss_pred hhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeE----eecCCeEEEE
Q 011581 77 GKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE----YETENRHYAH 152 (482)
Q Consensus 77 ~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~----~~~~~~~i~l 152 (482)
+.+......+||+++||+|+|||||+++|+.....+.+......+.+|..++|+++|+|++..... +++.++.++|
T Consensus 11 ~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~l 90 (720)
T TIGR00490 11 ELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINL 90 (720)
T ss_pred HHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEE
Confidence 344445567999999999999999999998754333222222335678999999999999876543 6778899999
Q ss_pred EeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh------H---HHHHHH
Q 011581 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD------E---ELLQLV 223 (482)
Q Consensus 153 iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~------~---~~~~~i 223 (482)
||||||.+|...+..+++.+|++|+|+|+.+|+..++.++++.+...++| .++|+||+|+... + +.+..+
T Consensus 91 iDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~~~~~~~~~~~~~~~~ 169 (720)
T TIGR00490 91 IDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVK-PVLFINKVDRLINELKLTPQELQERFIKI 169 (720)
T ss_pred EeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCC-EEEEEEChhcccchhcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999888999 5789999998642 1 122222
Q ss_pred HHHHHHHHhhcC---------CCCCCccEEEcchhhhHHH----hhcCC------------CcccCcchhhhhHHHHHHH
Q 011581 224 ELEVRELLSSYE---------FPGDDVPIISGSALLALEA----LMANP------------SIKRGENQWVDKIYELMDS 278 (482)
Q Consensus 224 ~~~i~~~l~~~~---------~~~~~~~~i~~Sa~~g~~~----~~~~~------------~~~~~~~~w~~gi~~Ll~~ 278 (482)
...+...+.... +...+......|++.++.. +.... ........|+-=+..|++.
T Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~ 249 (720)
T TIGR00490 170 ITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDM 249 (720)
T ss_pred hHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHH
Confidence 223333433210 0000111222344433100 00000 0000000233335788999
Q ss_pred hhhcCCCCCC-------------------------CCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCc
Q 011581 279 VDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKE 333 (482)
Q Consensus 279 l~~~l~~~~~-------------------------~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~ 333 (482)
+..++|+|.. +.+.|+.+.|.+++..++.|++++|||.+|+|+.||.|++.+.+.
T Consensus 250 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~ 329 (720)
T TIGR00490 250 VIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKA 329 (720)
T ss_pred HHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCC
Confidence 9999998841 124589999999988889999999999999999999999998764
Q ss_pred cceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 334 TRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 334 ~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
..+|..|+.. ..+++.|.|||+|++. + ..++.+||+|++++
T Consensus 330 --~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~GdtL~~~~ 374 (720)
T TIGR00490 330 --KARIQQVGVYMGPERVEVDEIPAGNIVAVI--G--LKDAVAGETICTTV 374 (720)
T ss_pred --eeEeeEEEEeccCCccCccEECCCCEEEEE--C--ccccccCceeecCC
Confidence 6789898765 3579999999999885 3 34678999998764
No 52
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=4.3e-32 Score=249.32 Aligned_cols=182 Identities=42% Similarity=0.632 Sum_probs=153.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCC--cccccccCChhhhcCCceeeeeeeEee--cCCeEEEEEeCCCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAP--KKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGH 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPG~ 158 (482)
|+.++|+++||+|+|||||+++|++.......... .....+|..++|+++|+|++.....++ ..++.++|||||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 46789999999999999999999977544332111 112357889999999999999999998 89999999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHH-HHHhhcCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVR-ELLSSYEFP 237 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~-~~l~~~~~~ 237 (482)
.+|.+++..++..+|++|+|||+.+|...|+.+++..+..+++| +|+|+||||+. +..++.+.+++. .+++.+++.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTST
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999 89999999999 333334444666 677888876
Q ss_pred C-CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 238 G-DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 238 ~-~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
+ ..+|++++||++|+ |+.+|+++|.+++|+
T Consensus 158 ~~~~~~vi~~Sa~~g~------------------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 158 GEEIVPVIPISALTGD------------------GIDELLEALVELLPS 188 (188)
T ss_dssp TTSTEEEEEEBTTTTB------------------THHHHHHHHHHHS--
T ss_pred ccccceEEEEecCCCC------------------CHHHHHHHHHHhCcC
Confidence 5 47999999999998 999999999998873
No 53
>PRK12740 elongation factor G; Reviewed
Probab=99.98 E-value=1.5e-30 Score=282.87 Aligned_cols=263 Identities=31% Similarity=0.463 Sum_probs=207.1
Q ss_pred EecCCccHHHHHHHHHHhHHhcCCC--CCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhh
Q 011581 91 IGHVDHGKTTLTAALTMALASLGNS--APKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITG 168 (482)
Q Consensus 91 ~G~~~~GKSTLi~~L~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 168 (482)
+||+|+|||||+++|+.....+... .....+.+|..+.|+++|+|+......+.+.+..++|||||||.+|...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5999999999999998764332110 11123678999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC-------------
Q 011581 169 AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE------------- 235 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~------------- 235 (482)
+..+|++|+|+|++.+...++..++..+...++| +++|+||+|+.... ...+.+++++.+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 9999999999999999999999999999999999 77899999987522 1111123333221100
Q ss_pred --------------------------------------------------------------------------CCCCCc
Q 011581 236 --------------------------------------------------------------------------FPGDDV 241 (482)
Q Consensus 236 --------------------------------------------------------------------------~~~~~~ 241 (482)
....-+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 001135
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC-----------------CCCCCeeEEEEeEEee
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR-----------------QTDLPFLLAVEDVFSI 304 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~-----------------~~~~~~~~~I~~v~~v 304 (482)
|++.+||++|. |+..||+.+..++|+|.. +.+.|+.+.|.+++..
T Consensus 238 Pv~~gSA~~~~------------------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~ 299 (668)
T PRK12740 238 PVFCGSALKNK------------------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDD 299 (668)
T ss_pred EEEeccccCCc------------------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeec
Confidence 56666666666 899999999999998842 3356899999999999
Q ss_pred CCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 305 TGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 305 ~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
+++|.++++||.+|+|+.||.|++.+.++ ..+|..|... ..++++|.|||++++. ++ ..+++||+|++.+
T Consensus 300 ~~~G~i~~~RV~sG~L~~g~~v~~~~~~~--~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 300 PFVGKLSLVRVYSGTLKKGDTLYNSGTGK--KERVGRLYRMHGKQREEVDEAVAGDIVAVA--KL--KDAATGDTLCDKG 373 (668)
T ss_pred CCCCcEEEEEEeeeEEcCCCEEEeCCCCC--cEEecceeeecCCCccccCccCCCCEEEEe--cc--CccCCCCEEeCCC
Confidence 99999999999999999999999987643 4566666543 4679999999999987 44 4689999998654
No 54
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.5e-32 Score=252.62 Aligned_cols=348 Identities=30% Similarity=0.473 Sum_probs=275.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe-----ec-----------
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY-----ET----------- 145 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-----~~----------- 145 (482)
+...+||+.+||+-+||||++.++.+. ..-+++.|-+|.+|+...+..- +.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv-------------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGV-------------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccc-------------eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 345789999999999999999998653 2234666778888887655421 00
Q ss_pred ----------------C-----CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCc
Q 011581 146 ----------------E-----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPN 203 (482)
Q Consensus 146 ----------------~-----~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~ 203 (482)
. -+++.|+|+|||.-...+|+.++...|+++|+|.+++ -+++||.||+....-+..+|
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 0 2457899999999999999999999999999999997 57899999999999999999
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 204 MVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 204 iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++-||+|+...+...+..+ ++..+++... .+..|++|+||..+. +++.+.|++.+.+
T Consensus 182 iiilQNKiDli~e~~A~eq~e-~I~kFi~~t~--ae~aPiiPisAQlky------------------NId~v~eyivkkI 240 (466)
T KOG0466|consen 182 IIILQNKIDLIKESQALEQHE-QIQKFIQGTV--AEGAPIIPISAQLKY------------------NIDVVCEYIVKKI 240 (466)
T ss_pred EEEEechhhhhhHHHHHHHHH-HHHHHHhccc--cCCCceeeehhhhcc------------------ChHHHHHHHHhcC
Confidence 999999999998665555443 7888887554 357899999998887 7899999999999
Q ss_pred CCCCCCCCCCeeEEEEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecC----Ccccee-------EEEEEee
Q 011581 284 PIPQRQTDLPFLLAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGL----KETRNF-------TVTGVEM 344 (482)
Q Consensus 284 ~~~~~~~~~~~~~~I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~----~~~~~~-------~V~~i~~ 344 (482)
|.|.|+...|.++.|.+.|.++- .|-|+.|.+..|.+++||.+.+.|. +..... +|.+++.
T Consensus 241 PvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~A 320 (466)
T KOG0466|consen 241 PVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFA 320 (466)
T ss_pred CCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHh
Confidence 99999999999999999998762 5778999999999999999999884 111122 4555666
Q ss_pred cccccceeecCCeEEEEEccccc----cCcccCeEEeCCCCCCC-CceEEEEEEEeecC-----CC----CCCCCCCCCC
Q 011581 345 FQKTLDEAMAGDNVGLLLRGVQK----ADIQRGMVLAKPGTITP-HTKFLAIVYVLKKE-----EG----GRHSPFFAGY 410 (482)
Q Consensus 345 ~~~~v~~a~aG~~v~l~l~~~~~----~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~-----~~----~~~~~i~~g~ 410 (482)
.+.+.+.|.||..+++.-+ +++ .|=-.|.||...+.++. +.+++...++|... ++ .+...+.+|.
T Consensus 321 E~n~L~~AvPGGLIGVGT~-~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E 399 (466)
T KOG0466|consen 321 EQNDLQFAVPGGLIGVGTK-MDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNE 399 (466)
T ss_pred hhccceeecCCceeeeccc-cCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCc
Confidence 6788999999999998633 222 33445777877776443 67788877776431 11 1224678899
Q ss_pred ccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEe----eCCcEEEEEEEe
Q 011581 411 RPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIR----EGGKTVGAGVIQ 478 (482)
Q Consensus 411 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr----~~~~tvg~G~v~ 478 (482)
-.++.+|+...-++|..+..+ .+++.+..|+|.+.|.++.+. ..+|.+|+|.|.
T Consensus 400 ~lmvNIGS~sTG~~v~~vk~d--------------~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I~ 457 (466)
T KOG0466|consen 400 ILMVNIGSTSTGGRVSAVKAD--------------MAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQIK 457 (466)
T ss_pred EEEEEecccccCceEEEEecc--------------eeeeEecCchhcccchhhhhhhhhhhheEEecceeEe
Confidence 999999999999999988643 668889999999999999883 348999999985
No 55
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.97 E-value=1.6e-30 Score=277.50 Aligned_cols=248 Identities=25% Similarity=0.331 Sum_probs=192.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec----CCeEEEEEeCCCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET----ENRHYAHVDCPGH 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~----~~~~i~liDtPG~ 158 (482)
...++|+++||+|+|||||+++|.+... ..+..+|+|++.....+.+ .+..++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~----------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI----------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC----------------ccccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 3557999999999999999999975311 1123467777665544433 3588999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHH---HhhcC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVREL---LSSYE 235 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~---l~~~~ 235 (482)
++|..++.+++..+|++|||||+.+|..+||.+++..+...++| +|+++||+|+.+.. .+.+..++..+ ...++
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC
Confidence 99999999999999999999999999999999999999999999 89999999997632 11222222221 11111
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC--CCCCCCCCCeeEEEEeEEeeCCCceEEEE
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP--IPQRQTDLPFLLAVEDVFSITGRGTVATG 313 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~--~~~~~~~~~~~~~I~~v~~v~g~G~v~~G 313 (482)
..+|++++||++|. |+.+|++.|..... ....+.+.|+...|.+++..+++|++++|
T Consensus 383 ---~~vpvv~VSAktG~------------------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~ 441 (742)
T CHL00189 383 ---GDTPMIPISASQGT------------------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATI 441 (742)
T ss_pred ---CCceEEEEECCCCC------------------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEE
Confidence 35799999999998 89999998876432 12223456888999998888999999999
Q ss_pred EEEeeeeecCCEEEEecCCccceeEEEEEee-cccccceeecCCeEEEEEccccccCcccCeEEe
Q 011581 314 RVERGTIKVGETVDLVGLKETRNFTVTGVEM-FQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 314 ~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
+|.+|+|+.||.|.+++. ..+|+++.. .+..+..|.||+.|.+. ++. .....||.+.
T Consensus 442 ~V~sGtLr~GD~vv~g~~----~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~~Gd~l~ 499 (742)
T CHL00189 442 LVQNGTLHIGDIIVIGTS----YAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPATGEHFQ 499 (742)
T ss_pred EEEcCEEecCCEEEECCc----ceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCCCCCEEE
Confidence 999999999999988763 468999984 45789999999999874 321 3456788875
No 56
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-32 Score=265.41 Aligned_cols=332 Identities=32% Similarity=0.477 Sum_probs=271.5
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHH------------HhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALT------------MALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR 148 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~------------~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~ 148 (482)
..+.+++|+++||+++||||+..-.. .....++++.+.++|.+|....|+++|++++...+.++...+
T Consensus 3 ~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 3 KEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred CcccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 45778999999999999999877321 124567889999999999999999999999999999999999
Q ss_pred EEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-------hHHHHHHHHHHHHcCCCcEEEEEecCCCCChH---H
Q 011581 149 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-------MPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE---E 218 (482)
Q Consensus 149 ~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~---~ 218 (482)
.++++|.|||.+|.++|+.+..++|+++++|.+..|. .+|++||..++..+++.++++.+||||...+. .
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~ 162 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 162 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCcccc
Confidence 9999999999999999999999999999999985443 38999999999999999999999999986532 2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEE
Q 011581 219 LLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAV 298 (482)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I 298 (482)
+++++.++.+...+..++ ...+. .
T Consensus 163 r~~ei~k~~~~~~~~~g~----------------------------------n~~~~----------------------~ 186 (391)
T KOG0052|consen 163 RYEEIKKEVSSYIKKIGY----------------------------------NPAAV----------------------L 186 (391)
T ss_pred chhhhheeeeeeeecccc----------------------------------CChhh----------------------h
Confidence 222221111111111111 00010 4
Q ss_pred EeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeC
Q 011581 299 EDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAK 378 (482)
Q Consensus 299 ~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 378 (482)
+++|++.+.| +..|.++.++.+...+... +.++++.++++..-..+.+|++++++..++...++++|+++.+
T Consensus 187 ~~~~~~~g~~------~~t~iie~~~~v~~~~~~~--~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~d 258 (391)
T KOG0052|consen 187 QDVYKIGGIG------VETGISEPGMDVTFAPSGV--TTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGD 258 (391)
T ss_pred ccceeeccee------eeeeeccCccceecccccc--ccccccEEEEeccCccCCCcceeeeecccCccCcccccceecc
Confidence 4577777666 7888889998887777654 6789999998888889999999999999999999999999998
Q ss_pred CCCCCC--CceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccc--------cccccccCCCCEEEEE
Q 011581 379 PGTITP--HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK--------DEESKMVMPGDRIKMV 448 (482)
Q Consensus 379 ~~~~~~--~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~--------~~~~~~~~~g~~~~v~ 448 (482)
..+.++ ...|.+++.+|.|+ ..|..||.|.|.+|+.+++|++..|..+. +.++++++.+|.+.+.
T Consensus 259 sK~~p~~~~~g~t~qviilnhp-----gqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~ 333 (391)
T KOG0052|consen 259 SKNDPPVEAAGFTAQVIILNHP-----GQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVE 333 (391)
T ss_pred cccCCccccccceeeEEEecCc-----cccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeee
Confidence 876433 56899999999997 46899999999999999999999987654 3467899999999999
Q ss_pred EEeCceEeeccC------CeEEEeeCCcEEEEEEEeeec
Q 011581 449 VELIMPVACEQG------MRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 449 ~~~~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~ 481 (482)
+.+.+|+|++.. +||.+|+...|+|.|.|..+.
T Consensus 334 ~vp~kp~~ve~~~~~~~l~rfav~d~~~tvavgvikav~ 372 (391)
T KOG0052|consen 334 MVPGKPLCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVD 372 (391)
T ss_pred eccCCccccccccccccccchhhhhhhccccccceeeee
Confidence 999999999864 799999999999999998765
No 57
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=9.4e-30 Score=280.54 Aligned_cols=302 Identities=24% Similarity=0.378 Sum_probs=210.1
Q ss_pred HhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-------
Q 011581 74 AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE------- 146 (482)
Q Consensus 74 ~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~------- 146 (482)
.+...+......+||+|+||+|+|||||+++|+.....+........+.+|..++|+++|+|++.....+.+.
T Consensus 8 ~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~ 87 (843)
T PLN00116 8 ELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLK 87 (843)
T ss_pred HHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccc
Confidence 3344455566789999999999999999999997755444434445567899999999999999876665552
Q ss_pred ---------CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC--
Q 011581 147 ---------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-- 215 (482)
Q Consensus 147 ---------~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-- 215 (482)
++.++|||||||.+|..++..+++.+|++|+|||+.+|+..||+.+++.+...++| +|+++||||+..
T Consensus 88 ~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~ 166 (843)
T PLN00116 88 DFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLE 166 (843)
T ss_pred ccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCcccchh
Confidence 67889999999999999999999999999999999999999999999999999999 789999999982
Q ss_pred ----hHH---HHHHHHHHHHHHHhhcC--------CCCCCccEEEcchhhhH----------------------------
Q 011581 216 ----DEE---LLQLVELEVRELLSSYE--------FPGDDVPIISGSALLAL---------------------------- 252 (482)
Q Consensus 216 ----~~~---~~~~i~~~i~~~l~~~~--------~~~~~~~~i~~Sa~~g~---------------------------- 252 (482)
.++ .++.+.++++..+..++ +.+..-.+++.|++.|+
T Consensus 167 ~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg 246 (843)
T PLN00116 167 LQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWG 246 (843)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhc
Confidence 222 23333345542222221 00000001111211110
Q ss_pred -------------------------------------HH--------h----hcC-CCccc-------------Ccchhh
Q 011581 253 -------------------------------------EA--------L----MAN-PSIKR-------------GENQWV 269 (482)
Q Consensus 253 -------------------------------------~~--------~----~~~-~~~~~-------------~~~~w~ 269 (482)
+. + ... ..+.. ...+|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~ 326 (843)
T PLN00116 247 ENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWL 326 (843)
T ss_pred cceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhc
Confidence 00 0 000 00000 013677
Q ss_pred hhHHHHHHHhhhcCCCCCC-------------------------CCCCCeeEEEEeEEeeCCCce-EEEEEEEeeeeecC
Q 011581 270 DKIYELMDSVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTIKVG 323 (482)
Q Consensus 270 ~gi~~Ll~~l~~~l~~~~~-------------------------~~~~~~~~~I~~v~~v~g~G~-v~~G~v~sG~l~~g 323 (482)
-|...|++.+..++|+|.. +.+.|+.+.|..++..+..|. ++++||.+|+|+.|
T Consensus 327 ~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g 406 (843)
T PLN00116 327 PASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATG 406 (843)
T ss_pred CChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCC
Confidence 7778999999999998841 113578888888876676777 89999999999999
Q ss_pred CEEEEecCC----ccc---eeEEEEEeecc----cccceeecCCeEEEEEccccccC-cccCeEEeCCC
Q 011581 324 ETVDLVGLK----ETR---NFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKAD-IQRGMVLAKPG 380 (482)
Q Consensus 324 ~~v~i~p~~----~~~---~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~~~~ 380 (482)
|.|++.+.+ +.. ..+|..|...+ .++++|.|||++++. | ..+ +..|++|++..
T Consensus 407 ~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--g--l~~~~~~gdTL~~~~ 471 (843)
T PLN00116 407 MKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--G--LDQFITKNATLTNEK 471 (843)
T ss_pred CEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--e--ecccccCCceecCCc
Confidence 999865431 111 13555555432 579999999999986 2 233 34599997664
No 58
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=1.2e-29 Score=268.02 Aligned_cols=256 Identities=28% Similarity=0.294 Sum_probs=183.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec------------------
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET------------------ 145 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~------------------ 145 (482)
+.+.|+++||+|+|||||+++|.+.....+ ...|+|.+.....+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~----------------~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~ 68 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAK----------------EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKL 68 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccC----------------CCCceEEeeceeeccccccccccceecccccccc
Confidence 456799999999999999999975421111 1122332221111110
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hH-------
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DE------- 217 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~------- 217 (482)
.-..++|||||||++|...+.+++..+|++++|+|+++|+.+|+.+++..+...++| +++++||+|+.. +.
T Consensus 69 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~ 147 (586)
T PRK04004 69 KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPF 147 (586)
T ss_pred ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchH
Confidence 111379999999999999999999999999999999999999999999999999999 899999999862 21
Q ss_pred ------------HHHHHHHHHHHHHHhhcCCCC----------CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHH
Q 011581 218 ------------ELLQLVELEVRELLSSYEFPG----------DDVPIISGSALLALEALMANPSIKRGENQWVDKIYEL 275 (482)
Q Consensus 218 ------------~~~~~i~~~i~~~l~~~~~~~----------~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~L 275 (482)
+.++....++...|...++.. ..++++|+||++|. |+.+|
T Consensus 148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe------------------Gi~dL 209 (586)
T PRK04004 148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE------------------GIPDL 209 (586)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC------------------ChHHH
Confidence 112222223445566666543 46899999999998 77777
Q ss_pred HHHhhh----cCCC-CCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----
Q 011581 276 MDSVDS----YIPI-PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ---- 346 (482)
Q Consensus 276 l~~l~~----~l~~-~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~---- 346 (482)
++.+.. +++. -..+.+.|++++|.+++.++|.|++++|+|.+|+|++||.|.++|.+....++|++|+.++
T Consensus 210 l~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e 289 (586)
T PRK04004 210 LMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDE 289 (586)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhh
Confidence 777643 2222 1234577999999999999999999999999999999999999887533357999998762
Q ss_pred --------cccceeecCCeEEEEEccccccCcccCeEE
Q 011581 347 --------KTLDEAMAGDNVGLLLRGVQKADIQRGMVL 376 (482)
Q Consensus 347 --------~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 376 (482)
..+++|.|..-|-+...|++ ++..|+-+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~v~i~~~gl~--~~~~g~~~ 325 (586)
T PRK04004 290 MRDPEDKFKPVDEVVAAAGVKISAPDLE--DALAGSPL 325 (586)
T ss_pred ccccccccccccccCCCCceEEEeCCcc--ccCCCCeE
Confidence 45666777666655433332 23445443
No 59
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.97 E-value=1.3e-30 Score=245.00 Aligned_cols=192 Identities=38% Similarity=0.559 Sum_probs=161.1
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHh---------------cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEE
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALAS---------------LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYA 151 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~---------------~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~ 151 (482)
||+++||+|+|||||+++|+..... .|...+.+.+.+|..++|+++|+|++.....+++.+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 6899999999999999999865322 2333444556899999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHhhcccCCeEEEeecCCC-------CChHHHHHHHHHHHHcCCCcEEEEEecCCCCC---hHHHHH
Q 011581 152 HVDCPGHADYVKNMITGAAQMDGAILVVSGAD-------GPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD---DEELLQ 221 (482)
Q Consensus 152 liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-------g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~---~~~~~~ 221 (482)
|||||||.+|...++.++..+|++|+|||+.+ +...++.+++..+..++++++|+|+||||+.. .++.++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 56679999998888888777999999999983 234566
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 222 LVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+.+++..+++.+++...++|++++||++|.|.. .+....+||+| ..|+++|....|
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~-----~~~~~~~w~~g-~~l~~~l~~~~~ 217 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI-----EKSENMPWYKG-PTLLEALDSLEP 217 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC-----cCCCCCCCccC-CcHHHHHhCCCC
Confidence 6677888888888886667999999999998532 12345699999 899999987643
No 60
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=1.7e-29 Score=265.75 Aligned_cols=245 Identities=26% Similarity=0.327 Sum_probs=176.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec------------------C
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET------------------E 146 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~------------------~ 146 (482)
.+.|+++||+|+|||||+++|++.... .+...|+|.+.....+.. .
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~----------------~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA----------------KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc----------------cccCCceecccCeeEeeeccccccccccccccccccc
Confidence 457999999999999999999864211 111233444322222211 1
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hH-----HHH
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DE-----ELL 220 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~-----~~~ 220 (482)
...+.|||||||++|...+..+++.+|++++|+|+++|..+|+.+++.++...++| +++++||+|+.+ +. ..+
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHH
Confidence 12488999999999999999999999999999999999999999999999999999 899999999974 11 011
Q ss_pred H-------HHHHH-------HHHHHhhcCCC----------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHH
Q 011581 221 Q-------LVELE-------VRELLSSYEFP----------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELM 276 (482)
Q Consensus 221 ~-------~i~~~-------i~~~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll 276 (482)
+ .+..+ +...+...++. ...+|++|+||++|+ |+++|+
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe------------------GideLl 208 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE------------------GIPELL 208 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC------------------ChhHHH
Confidence 1 01111 11223444442 236899999999998 888888
Q ss_pred HHhhhc----CCC-CCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc-----
Q 011581 277 DSVDSY----IPI-PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----- 346 (482)
Q Consensus 277 ~~l~~~----l~~-~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----- 346 (482)
++|..+ ++. ...+.+.|++++|.++|.++|.|++++|+|.+|+|++||.|.++|......++|++|...+
T Consensus 209 ~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~ 288 (590)
T TIGR00491 209 TMLAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEM 288 (590)
T ss_pred HHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccc
Confidence 877542 211 1224578999999999999999999999999999999999999987543467999998654
Q ss_pred -------cccceeecCCeEEEEEcc
Q 011581 347 -------KTLDEAMAGDNVGLLLRG 364 (482)
Q Consensus 347 -------~~v~~a~aG~~v~l~l~~ 364 (482)
..+.++.|..-+-+...+
T Consensus 289 r~~~~~~~~~~~~~~~~~~~v~~~~ 313 (590)
T TIGR00491 289 RESRKKFQKVDEVVAAAGVKIAAPG 313 (590)
T ss_pred cccccccCCcceecCCCceeEEecC
Confidence 245555555444444333
No 61
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.2e-31 Score=264.63 Aligned_cols=270 Identities=27% Similarity=0.414 Sum_probs=212.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHH---hcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALA---SLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
...+||++..|.|+|||||.++++...+ .++....+ ...+|..+.|+++|+|++.+...+.|.++++++||||||.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 3578999999999999999999986533 23332222 5578999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-----------------------
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD----------------------- 216 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~----------------------- 216 (482)
||..+..++++..|++|+|+|+..|++.||...+++++.+++| .|.++||||+...
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVP-RICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 9999999999999999999999999999999999999999999 5688999998763
Q ss_pred -----------------------------------H-----------HHHHHHH---H---------------HHHHHHh
Q 011581 217 -----------------------------------E-----------ELLQLVE---L---------------EVRELLS 232 (482)
Q Consensus 217 -----------------------------------~-----------~~~~~i~---~---------------~i~~~l~ 232 (482)
+ +..+.+. + ++...++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 0 0001000 0 1111111
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC---------------------CCC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR---------------------QTD 291 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~---------------------~~~ 291 (482)
+.-+....+|++..||+.+. |++.|||++.++||+|.. ..+
T Consensus 275 r~Ti~r~fvPVl~GSAlKNk------------------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~ 336 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKNK------------------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDK 336 (721)
T ss_pred HHHhhcceeeEEechhhccc------------------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCC
Confidence 11223345788888888876 999999999999998743 112
Q ss_pred CCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEccccc
Q 011581 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQK 367 (482)
Q Consensus 292 ~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~ 367 (482)
.||......+..-+. |...+.||.+|+|+.||.++...+++ ++++..+.+.| ++++++.|||+|++. |+
T Consensus 337 ~Pfv~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgK--Kvrv~RL~rmHa~~medV~~v~AG~I~alf--Gi-- 409 (721)
T KOG0465|consen 337 DPFVALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTGK--KVRVGRLVRMHANDMEDVNEVLAGDICALF--GI-- 409 (721)
T ss_pred CceeeeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCCc--eeEhHHHhHhcccccchhhhhhccceeeee--cc--
Confidence 277666554444444 89999999999999999999988875 67777766554 579999999999885 44
Q ss_pred cCcccCeEEeCCC
Q 011581 368 ADIQRGMVLAKPG 380 (482)
Q Consensus 368 ~~i~~G~vl~~~~ 380 (482)
+...||++.+..
T Consensus 410 -dcasGDTftd~~ 421 (721)
T KOG0465|consen 410 -DCASGDTFTDKQ 421 (721)
T ss_pred -ccccCceeccCc
Confidence 789999999874
No 62
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.97 E-value=8.4e-30 Score=237.72 Aligned_cols=190 Identities=30% Similarity=0.435 Sum_probs=157.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhc---------------CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEE
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASL---------------GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYA 151 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~---------------g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~ 151 (482)
||+++||+|+|||||+++|+.....+ ++......+.+|..+.|+++|+|++.....+++++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999998653221 222334567889999999999999999999999999999
Q ss_pred EEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHHHHHHHHHHHHH
Q 011581 152 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EELLQLVELEVREL 230 (482)
Q Consensus 152 liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~i~~~i~~~ 230 (482)
|||||||.+|...+..++..+|++|+|+|+++++..++.+++.++...+.|++|+|+||+|+.+. ++.++.+..+++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888888778889999999863 34455566688888
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++.+++. ..+++++||++|.|.-. .....+||+| +.|+++|++..|
T Consensus 161 ~~~~~~~--~~~ii~iSA~~g~ni~~-----~~~~~~w~~g-~~~~~~~~~~~~ 206 (208)
T cd04166 161 AAKLGIE--DITFIPISALDGDNVVS-----RSENMPWYSG-PTLLEHLETVPI 206 (208)
T ss_pred HHHcCCC--CceEEEEeCCCCCCCcc-----CCCCCCCCCC-CcHHHHHhcCCC
Confidence 8888763 46899999999974322 1245699999 899999987543
No 63
>PTZ00416 elongation factor 2; Provisional
Probab=99.97 E-value=3.2e-28 Score=267.92 Aligned_cols=298 Identities=24% Similarity=0.415 Sum_probs=205.7
Q ss_pred hhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC----------
Q 011581 77 GKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE---------- 146 (482)
Q Consensus 77 ~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---------- 146 (482)
..+......+||+++||+|||||||+++|+..............+.+|..++|+++|+|++.+...+.+.
T Consensus 11 ~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~ 90 (836)
T PTZ00416 11 EIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQ 90 (836)
T ss_pred HHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCC
Confidence 3444456678999999999999999999997644333323333456899999999999999876655554
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC----C--hHH--
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV----D--DEE-- 218 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~----~--~~~-- 218 (482)
++.++|+|||||.+|..++..+++.+|++|+|||+.+|+..||+.+++.+...++| +|+++||||+. + +++
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHH
Confidence 67799999999999999999999999999999999999999999999999999998 78899999997 2 222
Q ss_pred -HHHHHHHHHHHHHhhcC--------CCC--CCccEEEcchhhhHH-------------------H--------------
Q 011581 219 -LLQLVELEVRELLSSYE--------FPG--DDVPIISGSALLALE-------------------A-------------- 254 (482)
Q Consensus 219 -~~~~i~~~i~~~l~~~~--------~~~--~~~~~i~~Sa~~g~~-------------------~-------------- 254 (482)
.+..+.++++..+..++ +.+ .++|| .|+..|+. .
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~--~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~ 247 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAF--GSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAK 247 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEE--EeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCC
Confidence 23333345555554221 111 11222 12211000 0
Q ss_pred ----------------------------------------------hhc-CCCcccCc-------------chhhhhHHH
Q 011581 255 ----------------------------------------------LMA-NPSIKRGE-------------NQWVDKIYE 274 (482)
Q Consensus 255 ----------------------------------------------~~~-~~~~~~~~-------------~~w~~gi~~ 274 (482)
+.. +..+...+ ..|+--+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~ 327 (836)
T PTZ00416 248 TKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADT 327 (836)
T ss_pred CCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHH
Confidence 000 00000000 123333477
Q ss_pred HHHHhhhcCCCCCC-------------------------CCCCCeeEEEEeEEeeCCCce-EEEEEEEeeeeecCCEEEE
Q 011581 275 LMDSVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTIKVGETVDL 328 (482)
Q Consensus 275 Ll~~l~~~l~~~~~-------------------------~~~~~~~~~I~~v~~v~g~G~-v~~G~v~sG~l~~g~~v~i 328 (482)
|++++.+++|+|.. +.+.|+.+.|..++..+..|. +.++||.||+|+.||.|++
T Consensus 328 Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v 407 (836)
T PTZ00416 328 LLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRI 407 (836)
T ss_pred HHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEE
Confidence 89999999998831 113478888777777788888 7999999999999999986
Q ss_pred ecCCcc---ce----eEEEEEeecc----cccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 329 VGLKET---RN----FTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 329 ~p~~~~---~~----~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
.+.+.. .. .+|..|.... .++++|.||+++++. |++..-.+.| +|++..
T Consensus 408 ~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 408 QGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred eCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 543211 01 1355665443 579999999999986 3332236788 887654
No 64
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.8e-29 Score=249.15 Aligned_cols=232 Identities=32% Similarity=0.361 Sum_probs=180.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC---CeEEEEEeCCCchh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE---NRHYAHVDCPGHAD 160 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDtPG~~~ 160 (482)
..+-|+++||+|||||||+..+-+.....+ ...|+|++...+.++.+ ...++|||||||+-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~----------------EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA 67 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA 67 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc----------------cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH
Confidence 346799999999999999999965422211 25679999998888874 47899999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC---
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP--- 237 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~--- 237 (482)
|..+..+|...+|+++||||+++|+++||.|.+..++..++| +||++||||+.+.+- ..+..++. .+|+.
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np--~~v~~el~----~~gl~~E~ 140 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEANP--DKVKQELQ----EYGLVPEE 140 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCCH--HHHHHHHH----HcCCCHhh
Confidence 999999999999999999999999999999999999999999 999999999986321 11112222 22332
Q ss_pred -CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC--CCCCCCCCCeeEEEEeEEeeCCCceEEEEE
Q 011581 238 -GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP--IPQRQTDLPFLLAVEDVFSITGRGTVATGR 314 (482)
Q Consensus 238 -~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~--~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~ 314 (482)
+..+.++|+||++|. |+++||+.+.-.-. .-....+.+.+-.|.++...+|.|.+++-.
T Consensus 141 ~gg~v~~VpvSA~tg~------------------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatvi 202 (509)
T COG0532 141 WGGDVIFVPVSAKTGE------------------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVI 202 (509)
T ss_pred cCCceEEEEeeccCCC------------------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEE
Confidence 346899999999998 88998888754211 122345678899999999999999999999
Q ss_pred EEeeeeecCCEEEEecCCccceeEEEEEeec-ccccceeecCCeEEE
Q 011581 315 VERGTIKVGETVDLVGLKETRNFTVTGVEMF-QKTLDEAMAGDNVGL 360 (482)
Q Consensus 315 v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l 360 (482)
|.+|+|++||.+..+.. ..+|+.+... ..+++.+.++..+.+
T Consensus 203 v~~GtL~~GD~iv~g~~----~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 203 VQDGTLKKGDIIVAGGE----YGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EecCeEecCCEEEEccC----CCceEEeehhcCCCccccCCCCCeEE
Confidence 99999999999977764 2356665432 345666666544444
No 65
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6e-29 Score=246.60 Aligned_cols=235 Identities=31% Similarity=0.336 Sum_probs=183.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~ 162 (482)
+.+-|-||||+|||||||+.+|-+.....+ ...|||.....+.... ++..++|+|||||.-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~----------------E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG----------------EAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh----------------hcCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 356799999999999999999964322111 2357888877655433 67899999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
.+..+|+..+|.+||||.+.+|+.+||.|.+..++..++| +||++||||++.. +...+++. +.--.++.+| .+
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~pekv~~eL~-~~gi~~E~~G---Gd 290 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGANPEKVKRELL-SQGIVVEDLG---GD 290 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCHHHHHHHHH-HcCccHHHcC---Cc
Confidence 9999999999999999999999999999999999999999 9999999999863 22222111 1111233333 57
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC--CCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEee
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI--PIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 318 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l--~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG 318 (482)
++++|+||++|. |++.|.+++.-.. ..-..+...|+...|.+..-.+|+|.+.+..|..|
T Consensus 291 VQvipiSAl~g~------------------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrG 352 (683)
T KOG1145|consen 291 VQVIPISALTGE------------------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRG 352 (683)
T ss_pred eeEEEeecccCC------------------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecc
Confidence 999999999998 6666666654311 11123457799999999999999999999999999
Q ss_pred eeecCCEEEEecCCccceeEEEEEeec-ccccceeecCCeEEEE
Q 011581 319 TIKVGETVDLVGLKETRNFTVTGVEMF-QKTLDEAMAGDNVGLL 361 (482)
Q Consensus 319 ~l~~g~~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~ 361 (482)
+|+.|+.|..+-. -++|++++-+ .+++++|.|++-|.+.
T Consensus 353 TLkKG~vlV~G~~----w~KVr~l~D~nGk~i~~A~Ps~pv~V~ 392 (683)
T KOG1145|consen 353 TLKKGSVLVAGKS----WCKVRALFDHNGKPIDEATPSQPVEVL 392 (683)
T ss_pred ccccccEEEEech----hhhhhhhhhcCCCCccccCCCCceEee
Confidence 9999999965432 4589998865 4689999999999875
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=2.2e-27 Score=221.79 Aligned_cols=190 Identities=29% Similarity=0.432 Sum_probs=146.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC----------CeEEEEEeC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE----------NRHYAHVDC 155 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----------~~~i~liDt 155 (482)
+||+++||+|+|||||+++|+..............+.+|..+.|++||+|+......+.+. +..++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 5899999999999999999997644332222234567899999999999998875544333 678999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC------ChHH---HHHHHHHH
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV------DDEE---LLQLVELE 226 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~------~~~~---~~~~i~~~ 226 (482)
|||.+|..++..+++.+|++|+|+|+.+|...+++++++.+...++| +|+|+||+|+. ++++ .+..+.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~ 159 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQ 159 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988998 88999999986 3332 33445556
Q ss_pred HHHHHhhcCCC------CC--Cc-c----EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 227 VRELLSSYEFP------GD--DV-P----IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 227 i~~~l~~~~~~------~~--~~-~----~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
+..+++.+.-. .+ .+ | +++.|++.|+.. . + +-...+..+++.+.+.+|+|
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f-~----~-----~~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF-T----I-----IKFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe-c----c-----ccccchHHHHHHHHhhCCCC
Confidence 66766665211 01 12 4 788899999821 1 0 01225678999999998876
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.94 E-value=3.3e-26 Score=212.68 Aligned_cols=168 Identities=37% Similarity=0.568 Sum_probs=137.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-------------------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE------------------- 146 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~------------------- 146 (482)
+||+++||+|+|||||+++|++. ..|..+.|.++|+|+......+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999642 2477788889999988776555442
Q ss_pred --------C------eEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-ChHHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 147 --------N------RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMPQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 147 --------~------~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-~~~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
+ +.++|||||||++|...+..++..+|++++|+|+.++ ...++.+++..+...+++++++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 7899999999999999999999999999999999984 678889999888888887789999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCC
Q 011581 212 DQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQ 287 (482)
Q Consensus 212 D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~ 287 (482)
|+.+..+..+. .++++++++.+.. ..++++++||++|. |+++|++.|.+.+|.|.
T Consensus 148 Dl~~~~~~~~~-~~~i~~~~~~~~~--~~~~i~~vSA~~g~------------------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQALEN-YEQIKKFVKGTIA--ENAPIIPISAQLKY------------------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHHHHHH-HHHHHHHHhcccc--CCCcEEEEeCCCCC------------------CHHHHHHHHHHhCCCCC
Confidence 99874433322 2366666665432 35789999999998 89999999999888764
No 68
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.94 E-value=3.6e-25 Score=243.20 Aligned_cols=242 Identities=25% Similarity=0.263 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC------------------eEEEEEeCCCch
Q 011581 98 KTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN------------------RHYAHVDCPGHA 159 (482)
Q Consensus 98 KSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~------------------~~i~liDtPG~~ 159 (482)
||||+.+|.+... ......|+|++.....++.+. ..++|||||||+
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999975422 233467899998877665442 138999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hH----------------HHHHH
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DE----------------ELLQL 222 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~----------------~~~~~ 222 (482)
+|...+..++..+|++++|+|+++|+.+|+.+++..+...++| +++|+||+|+.. +. +...+
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 9998888889999999999999999999999999999999998 899999999963 21 11112
Q ss_pred HHHHHHH---HHhhcCCC----------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC-----
Q 011581 223 VELEVRE---LLSSYEFP----------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP----- 284 (482)
Q Consensus 223 i~~~i~~---~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~----- 284 (482)
+...+.+ .|...|+. ...++++|+||++|. |+++|++.|....+
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe------------------GId~Ll~~l~~l~~~~l~~ 678 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE------------------GIPELLMMVAGLAQKYLEE 678 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC------------------CHHHHHHHHHHhhHHhhhh
Confidence 2111112 24455543 247899999999998 89999988764322
Q ss_pred CCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec------------cccccee
Q 011581 285 IPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF------------QKTLDEA 352 (482)
Q Consensus 285 ~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~------------~~~v~~a 352 (482)
....+.+.|++++|.++|.++|.|+|++|.|.+|+|++||.|.++|.+.....+|+++... ...+++|
T Consensus 679 ~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~ 758 (1049)
T PRK14845 679 RLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEV 758 (1049)
T ss_pred hhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccc
Confidence 1223456799999999999999999999999999999999999998754456899999742 1356777
Q ss_pred ecCCeEEEEEccccccCcccCeEE
Q 011581 353 MAGDNVGLLLRGVQKADIQRGMVL 376 (482)
Q Consensus 353 ~aG~~v~l~l~~~~~~~i~~G~vl 376 (482)
.|+.-|.+...|++ .+..|+-+
T Consensus 759 ~~a~~vki~a~gl~--~~~aG~~~ 780 (1049)
T PRK14845 759 TAAAGVKIAAPGLE--EVLAGSPI 780 (1049)
T ss_pred cCCCceEEecCCcc--ccCCCCeE
Confidence 77777766544433 33556554
No 69
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=1.6e-25 Score=215.82 Aligned_cols=128 Identities=31% Similarity=0.456 Sum_probs=113.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCC--CCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGN--SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
||+++||+|+|||||+++|+.......+ ......+.+|..++|+++|+|++.....+++++.+++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 6999999999999999999865432211 11123567899999999999999999999999999999999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+..+++.+|++|+|||+.+|+..++.+++..+...++| +++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 99999999999999999999999999999999999999 678999999975
No 70
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=3.9e-25 Score=204.17 Aligned_cols=191 Identities=30% Similarity=0.406 Sum_probs=147.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.++|+++|++|+|||||+++|++.............+.+|..+.|..+|+|+......++.++..+.|||||||.+|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46999999999999999999986422211111111245677788899999999888888888999999999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC--CCcc
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG--DDVP 242 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~~ 242 (482)
+..+++.+|++++|+|+.++...++..++..+...++| +++|+||+|+.... .+...+++.+++..++... ..++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999999998888888888877778999 78899999997521 1222335566665544322 2578
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
++++||++|.+. .....|..++.+|++.|.+++|.|
T Consensus 159 iv~~Sa~~g~~~--------~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 159 VLYASAKNGWAS--------LNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEEeehhccccc--------cccccchhhHHHHHHHHHhcCCCC
Confidence 999999999742 122356679999999999998865
No 71
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.93 E-value=1.7e-25 Score=210.10 Aligned_cols=176 Identities=26% Similarity=0.325 Sum_probs=139.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeee------------------------E
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATV------------------------E 142 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~------------------------~ 142 (482)
+|+++|+.++|||||+++|+......+. ......++++.+|.++|+|...... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~--~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGR--GKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCC--CeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 5899999999999999999865444433 3333467889999999988753331 1
Q ss_pred eecCCeEEEEEeCCCchhhHHHHHhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHH
Q 011581 143 YETENRHYAHVDCPGHADYVKNMITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELL 220 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~~~~~~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~ 220 (482)
++..++.++|+|||||++|.+++..++. .+|++++|||+..|...++++++.++...++| +++|+||+|+.+.++ .
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~~~~-~ 156 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAPANI-L 156 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccCHHH-H
Confidence 2344678999999999999999999986 79999999999999999999999999999999 889999999987443 3
Q ss_pred HHHHHHHHHHHhhcCCC---------------------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHh
Q 011581 221 QLVELEVRELLSSYEFP---------------------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSV 279 (482)
Q Consensus 221 ~~i~~~i~~~l~~~~~~---------------------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l 279 (482)
+...+++.++++..++. ...+|++++|+.+|. |+++|++.|
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~------------------Gi~~L~~~L 218 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE------------------GLDLLHAFL 218 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc------------------CHHHHHHHH
Confidence 34445777777643322 234699999999998 998888888
Q ss_pred hhcCCC
Q 011581 280 DSYIPI 285 (482)
Q Consensus 280 ~~~l~~ 285 (482)
.. +|+
T Consensus 219 ~~-lp~ 223 (224)
T cd04165 219 NL-LPL 223 (224)
T ss_pred Hh-cCC
Confidence 65 553
No 72
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=3.6e-25 Score=204.06 Aligned_cols=172 Identities=33% Similarity=0.523 Sum_probs=138.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--------------CeEEE
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--------------NRHYA 151 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--------------~~~i~ 151 (482)
+||+++|++|+|||||+++|+... ..+.+|...+|+++|+|++.....+.+. +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~---------~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIA---------STAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhcc---------chhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 489999999999999999998641 1234677888999999998876666544 67899
Q ss_pred EEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHH---HHHHHHHHH
Q 011581 152 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL---LQLVELEVR 228 (482)
Q Consensus 152 liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~---~~~i~~~i~ 228 (482)
+||||||.+|...+..++..+|++++|+|+.++...++.+++..+...+.| +++++||+|+....+. .+.+++.+.
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999888999999999999999988998888877777887 8899999999864332 333333333
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQ 287 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~ 287 (482)
..+..+++ ..++++++||++|. |+.+|++.|.+.+++|.
T Consensus 151 ~~~~~~~~--~~~~vi~iSa~~g~------------------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 151 KTLEKTRF--KNSPIIPVSAKPGG------------------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHhcCc--CCCCEEEEeccCCC------------------CHHHHHHHHHhcccccc
Confidence 34443333 35899999999998 89999999999888763
No 73
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.93 E-value=3.4e-25 Score=209.98 Aligned_cols=127 Identities=37% Similarity=0.598 Sum_probs=112.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHh---cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALAS---LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
||+++||+|+|||||+++|+..... .|... ...+.+|..++|+++|+|+......+++++.+++|||||||.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 6899999999999999999976433 22211 2335678889999999999999999999999999999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+..+++.+|++++|+|+.++...++.+++..+...++| +++++||+|+..
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~ 130 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 999999999999999999999999999999999999999 678999999975
No 74
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.92 E-value=3.8e-24 Score=206.15 Aligned_cols=130 Identities=28% Similarity=0.491 Sum_probs=113.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCC---cccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAP---KKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~---~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
.+||+++||+|+|||||+++|+..... .|.... .....+|..++|+++|+++......+++.+..++|||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 479999999999999999999875332 222111 12345788999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+|...+..+++.+|++|+|+|+..++..++...++.+...++| +++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999999999999998888999 788999999865
No 75
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=1.3e-23 Score=196.75 Aligned_cols=190 Identities=27% Similarity=0.389 Sum_probs=143.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcC---CCCCcccccccCChhhhcCCceeeeeeeEeec-----CCeEEEEEeCCC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLG---NSAPKKYDEIDAAPEERARGITINTATVEYET-----ENRHYAHVDCPG 157 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g---~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-----~~~~i~liDtPG 157 (482)
+||+++||+|+|||||+++|+....... .......+.+|..+.|+++|+|+......+.+ ....+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 5799999999999999999997654433 33444556789999999999999877666543 347789999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC------hH---HHHHHHHHHHH
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD------DE---ELLQLVELEVR 228 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~------~~---~~~~~i~~~i~ 228 (482)
|.+|...+..++..+|++|+|+|+.++...++.++++.+...++| +++|+||+|++. .. +.+..+.+++.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888888888777888 889999999862 22 34444555777
Q ss_pred HHHhhcCCCCC--Ccc----EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 229 ELLSSYEFPGD--DVP----IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 229 ~~l~~~~~~~~--~~~----~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
.+++.++++.. .+| ++..|+..++.. . ..-+.++.+|++.|.+.+|.|
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~-~---------~~~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFGFCF-T---------LESFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCCeEE-e---------cHHHHhhhhHHHHHHhhCCCC
Confidence 77877766421 122 455666666521 0 011246678999999888765
No 76
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.2e-24 Score=210.30 Aligned_cols=303 Identities=26% Similarity=0.414 Sum_probs=215.4
Q ss_pred HHHHhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe--e----
Q 011581 71 IVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY--E---- 144 (482)
Q Consensus 71 ~~~~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~---- 144 (482)
...++++.|.+++..+|+.++.|+|+|||||...|......+........+++|..+.|++||+||....+.+ +
T Consensus 5 tvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~ 84 (842)
T KOG0469|consen 5 TVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDD 84 (842)
T ss_pred cHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHh
Confidence 4567888899999999999999999999999999998766555555556678899999999999998765533 1
Q ss_pred ----------cCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 145 ----------TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 145 ----------~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.++..+++||.|||.||..+.-.+++..|++++|||+.+|+--||...++++....+.+ ++++||||+.
T Consensus 85 dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 85 DLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKP-VLVMNKMDRA 163 (842)
T ss_pred HHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccc-eEEeehhhHH
Confidence 23567899999999999999999999999999999999999999999999999988874 5789999963
Q ss_pred ------ChHHHHHHHHHHHH---HHHhhcCCC--------CCCccEEEcchhhhHHH-------------------hhc-
Q 011581 215 ------DDEELLQLVELEVR---ELLSSYEFP--------GDDVPIISGSALLALEA-------------------LMA- 257 (482)
Q Consensus 215 ------~~~~~~~~i~~~i~---~~l~~~~~~--------~~~~~~i~~Sa~~g~~~-------------------~~~- 257 (482)
..+++++.....+. -.+..++.. +..-.+-+.|++.||.. ++.
T Consensus 164 lLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~ 243 (842)
T KOG0469|consen 164 LLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNR 243 (842)
T ss_pred HHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHH
Confidence 34455543322111 112222220 11112334566666540 000
Q ss_pred ----------------------------------------------------------------CCCcccCc--------
Q 011581 258 ----------------------------------------------------------------NPSIKRGE-------- 265 (482)
Q Consensus 258 ----------------------------------------------------------------~~~~~~~~-------- 265 (482)
.+..+..+
T Consensus 244 LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~v 323 (842)
T KOG0469|consen 244 LWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVV 323 (842)
T ss_pred hhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHH
Confidence 00000000
Q ss_pred -chhhhhHHHHHHHhhhcCCCCCC-------------------------CCCCCeeEEEEeEEeeCCCce-EEEEEEEee
Q 011581 266 -NQWVDKIYELMDSVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERG 318 (482)
Q Consensus 266 -~~w~~gi~~Ll~~l~~~l~~~~~-------------------------~~~~~~~~~I~~v~~v~g~G~-v~~G~v~sG 318 (482)
..|.-.-+.||+.|.-.+|+|.. +.+.|+.|+|.........|+ ..+|||++|
T Consensus 324 Mr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG 403 (842)
T KOG0469|consen 324 MRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSG 403 (842)
T ss_pred HHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecc
Confidence 14544446788888777887631 567899999998877666765 578999999
Q ss_pred eeecCCEEEEecCC----ccceeEEEEEee-------cccccceeecCCeEEEEEccccccCcccCeEE
Q 011581 319 TIKVGETVDLVGLK----ETRNFTVTGVEM-------FQKTLDEAMAGDNVGLLLRGVQKADIQRGMVL 376 (482)
Q Consensus 319 ~l~~g~~v~i~p~~----~~~~~~V~~i~~-------~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 376 (482)
++..|+++++.+.+ +....-+++|++ .-++++..-+|.++++. |++..-++.|-+-
T Consensus 404 ~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtGTiT 470 (842)
T KOG0469|consen 404 KVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTGTIT 470 (842)
T ss_pred eeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccCcee
Confidence 99999999998642 222233455543 23688999999999986 6665556666443
No 77
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=1.5e-23 Score=190.65 Aligned_cols=174 Identities=28% Similarity=0.415 Sum_probs=133.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe-----ecCCeEEEEEeCCCchh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY-----ETENRHYAHVDCPGHAD 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-----~~~~~~i~liDtPG~~~ 160 (482)
+||+++|++|+|||||+++|++........ ....+..+..+.|+.+|+|.......+ +..+..+.|||||||.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 589999999999999999999754322211 112346677888899999987765544 33567788999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
|...+..++..+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+.. .....+++.+. ++++ .
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~--~~~~~~~~~~~---~~~~--~ 151 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD--PERVKQQIEDV---LGLD--P 151 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCC--HHHHHHHHHHH---hCCC--c
Confidence 999999999999999999999999888888888777777888 88999999986522 11112233332 3332 2
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
.+++++||++|. |+++|++.|.+.+|.|
T Consensus 152 ~~~~~~Sa~~g~------------------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 SEAILVSAKTGL------------------GVEDLLEAIVERIPPP 179 (179)
T ss_pred ccEEEeeccCCC------------------CHHHHHHHHHhhCCCC
Confidence 458999999998 8999999999887765
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=2.3e-23 Score=190.76 Aligned_cols=180 Identities=41% Similarity=0.669 Sum_probs=146.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|.+|+|||||+|+|++.....+.........++....+..+|+|+......++..+..+.||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999875544443333334566777888899999888888888889999999999999999999
Q ss_pred hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC---------C
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF---------P 237 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~---------~ 237 (482)
..+..+|++++|+|+.++...+..+.+..+...+.| +++++||+|+...++... ..+++++.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEEDLEE-VLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcchhcHHH-HHHHHHHHHccccccchhhhhccc
Confidence 999999999999999999988888988888887888 899999999987433332 33466667766553 2
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
....+++++||++|. |+.++++.|.+.+|+|
T Consensus 159 ~~~~~v~~~Sa~~g~------------------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTGI------------------GVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccCc------------------CHHHHHHHHHhhCCCC
Confidence 346899999999998 8999999999988753
No 79
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.9e-25 Score=214.52 Aligned_cols=287 Identities=22% Similarity=0.294 Sum_probs=189.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.+||+++.|+|+||||..++++...+. .|. ........|....|++||+|++.+...|+|+++++++||||||.||
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~-vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGD-VDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccc-cCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 578999999999999999999865332 221 1122335677889999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH--HHHHHHHHHHH-----------
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLQLVELEVR----------- 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~--~~~~~i~~~i~----------- 228 (482)
.-+..+-++..|+++.|+|++.|+++||...|+++...++| -++++||||+.... ...+.+++.+.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqadk~~ip-~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ 194 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIP-AHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIG 194 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCc-hhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccc
Confidence 99999999999999999999999999999999999999999 56889999987531 11111211110
Q ss_pred ----------HHHhh--c--CCCC------CCccEEEcchhh-------hHHH----------------hhcCC-C---c
Q 011581 229 ----------ELLSS--Y--EFPG------DDVPIISGSALL-------ALEA----------------LMANP-S---I 261 (482)
Q Consensus 229 ----------~~l~~--~--~~~~------~~~~~i~~Sa~~-------g~~~----------------~~~~~-~---~ 261 (482)
..+.+ + +++. .+-|.+....-. ..|. +.+.. + +
T Consensus 195 eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i 274 (753)
T KOG0464|consen 195 EAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKI 274 (753)
T ss_pred ccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccccc
Confidence 00000 0 0000 012222211000 0000 00000 0 0
Q ss_pred ---------------------ccCcchhhhhHHHHHHHhhhcCCCCCCCCCC-------CeeEEEEeEEeeCCCceEEEE
Q 011581 262 ---------------------KRGENQWVDKIYELMDSVDSYIPIPQRQTDL-------PFLLAVEDVFSITGRGTVATG 313 (482)
Q Consensus 262 ---------------------~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~-------~~~~~I~~v~~v~g~G~v~~G 313 (482)
.-|..--.+|+..|++++.-++|+|+....+ .+...-..+...+.+|..++.
T Consensus 275 ~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkqrg~l~fm 354 (753)
T KOG0464|consen 275 DAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFM 354 (753)
T ss_pred CHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhcccccCceeEE
Confidence 0000111248889999999999998765433 222333345556789999999
Q ss_pred EEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCC
Q 011581 314 RVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKP 379 (482)
Q Consensus 314 ~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 379 (482)
||.+|+++.+-.+..... ...-.+..+... +..+++..||.+.-.+ .......||+++..
T Consensus 355 riysgsi~~~~ai~nin~--~~se~~~kl~~pfade~~~i~qlsagnialt~----glk~tatgdtivas 418 (753)
T KOG0464|consen 355 RIYSGSIHNNLAIFNING--MCSEGILKLFLPFADEHREIEQLSAGNIALTA----GLKHTATGDTIVAS 418 (753)
T ss_pred EEecccccCceeeeeccc--ccccchHhhhccchhhhhhhhhcccccEEEEe----cceeeccCCeEEec
Confidence 999999999988866542 122233333322 3568889999866443 33456778888654
No 80
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=3.1e-23 Score=185.40 Aligned_cols=162 Identities=43% Similarity=0.658 Sum_probs=127.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|++|+|||||+++|++. ..+..+.+..+++|++.....+... +..+.+|||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 37999999999999999999753 1233455666788888777666665 778999999999999998
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPII 244 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i 244 (482)
+..++..+|++++|+|+++++..++.+++..+...+.+++++++||+|+.+... .....+++.+.++..+. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LELVEEEIRELLAGTFL--ADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-HHHHHHHHHHHHHhcCc--CCCcEE
Confidence 888899999999999999988889988888777778744899999999987432 22233355666654332 247899
Q ss_pred EcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 245 SGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 245 ~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++||++|. |+.++++.+.+
T Consensus 145 ~~Sa~~~~------------------~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGE------------------GIEELKEYLDE 163 (164)
T ss_pred EEeCCCCc------------------CHHHHHHHHhh
Confidence 99999998 88899888754
No 81
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.1e-23 Score=211.40 Aligned_cols=242 Identities=26% Similarity=0.331 Sum_probs=178.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec------------------C
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET------------------E 146 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~------------------~ 146 (482)
.+-+||+||+|.|||-|+..|-+.+..-| ...|+|......+|.. .
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqeg----------------eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~k 538 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEG----------------EAGGITQQIGATYFPAENIREKTKELKKDAKKRLK 538 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccc----------------cccceeeeccccccchHHHHHHHHHHHhhhhhhcC
Confidence 45699999999999999999976533322 2445666655544432 1
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hH-----HHH
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DE-----ELL 220 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~-----~~~ 220 (482)
--.+.+||||||+.|.....+|...||++|||||..+|+.+||.|.+.+++..+.| |||++||+|++. |. .+.
T Consensus 539 vPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchHH
Confidence 23478999999999999999999999999999999999999999999999999999 999999999764 31 111
Q ss_pred HHH-------HHH-------HHHHHhhcCCC----------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHH
Q 011581 221 QLV-------ELE-------VRELLSSYEFP----------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELM 276 (482)
Q Consensus 221 ~~i-------~~~-------i~~~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll 276 (482)
+.+ .++ +...+...|++ +..+.++|+||..|. |++.|+
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe------------------GipdLl 679 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE------------------GIPDLL 679 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC------------------CcHHHH
Confidence 111 111 11112222322 346789999999998 999999
Q ss_pred HHhhhcCCCC--CC-CCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCcc--------------ceeEE
Q 011581 277 DSVDSYIPIP--QR-QTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET--------------RNFTV 339 (482)
Q Consensus 277 ~~l~~~l~~~--~~-~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~--------------~~~~V 339 (482)
-+|.++.... .+ .....+.+.|-+|-.++|.|+.+-..+..|.|+.||.|.+++.+.. ...+|
T Consensus 680 ~llv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRV 759 (1064)
T KOG1144|consen 680 LLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRV 759 (1064)
T ss_pred HHHHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhcc
Confidence 9888754211 01 1345778999999999999999999999999999999998875321 14577
Q ss_pred EEEeecccc-------------cceeecCCeEEEE
Q 011581 340 TGVEMFQKT-------------LDEAMAGDNVGLL 361 (482)
Q Consensus 340 ~~i~~~~~~-------------v~~a~aG~~v~l~ 361 (482)
++-++++.. .+.|.||-.+-+.
T Consensus 760 k~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 760 KGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred ccceeehhHhhhhccchhhhcchHHHhcCCeeEEe
Confidence 777777643 4566777766655
No 82
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.88 E-value=5.7e-22 Score=192.29 Aligned_cols=128 Identities=31% Similarity=0.448 Sum_probs=110.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCC--CCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNS--APKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
||+++||+|+|||||+++|+.......+. .....+..|..++|+.+++|+......+++++..+++||||||.+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999998653322110 1122356788899999999999988889999999999999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+..++..+|++++|+|++.+...++..+++.+...++| +++++||+|+..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999999999999999 678999999876
No 83
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.3e-20 Score=169.32 Aligned_cols=159 Identities=36% Similarity=0.450 Sum_probs=118.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC---CeEEEEEeCCCchhhHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE---NRHYAHVDCPGHADYVK 163 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---~~~i~liDtPG~~~~~~ 163 (482)
.|+++|++|+|||||+++|+.... ......++|.+.....++.. +..+.+|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV----------------AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc----------------ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 599999999999999999975311 11123455666555555553 67899999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc-CCCCCCcc
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY-EFPGDDVP 242 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~-~~~~~~~~ 242 (482)
.+..++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+..... +.+..++.++.... ......++
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceecccccH--HHHHHHHHHhhccccccccCcCc
Confidence 888888999999999999999888999999888888998 889999999975321 11222222222111 00123578
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++|+.+|. |+.+|+++|.+.
T Consensus 143 ~~~~Sa~~~~------------------gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTGE------------------GIDDLLEAILLL 164 (168)
T ss_pred EEEeecccCC------------------CHHHHHHHHHHh
Confidence 9999999998 899999998764
No 84
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.3e-20 Score=189.21 Aligned_cols=130 Identities=27% Similarity=0.425 Sum_probs=118.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...+||+++.|+|||||||...|+...+.+...-+.+-+++|..+.|+.||||...+.+.+..+++.++|||+|||.||.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45789999999999999999999876655555555566789999999999999999988888899999999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~ 213 (482)
.+.-++.+.+|+++++||+.+|+-.||...++++...+.. .++|+||||+
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhhh
Confidence 9999999999999999999999999999999999999988 7899999994
No 85
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=2.9e-21 Score=169.10 Aligned_cols=148 Identities=28% Similarity=0.335 Sum_probs=105.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY---- 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~---- 161 (482)
++|+++|.+|+|||||+|+|++.....+ ...|.|++.....+...+..+.|+|+||.-++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~----------------n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG----------------NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE----------------ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec----------------CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 4799999999999999999998643222 35788999988889989999999999993221
Q ss_pred --HHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 --VKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 --~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.+-+...+ ...|++++|+||+. .......+.++..+|+| +|+|+||+|+.......... +.+.+.+ +
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g~~id~-~~Ls~~L---g-- 135 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKGIEIDA-EKLSERL---G-- 135 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTTEEE-H-HHHHHHH---T--
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcCCEECH-HHHHHHh---C--
Confidence 11122222 57999999999986 45556677778889999 89999999986532211111 1333333 3
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHh
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSV 279 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l 279 (482)
+|++++||.++. |+++|+++|
T Consensus 136 ---~pvi~~sa~~~~------------------g~~~L~~~I 156 (156)
T PF02421_consen 136 ---VPVIPVSARTGE------------------GIDELKDAI 156 (156)
T ss_dssp ---S-EEEEBTTTTB------------------THHHHHHHH
T ss_pred ---CCEEEEEeCCCc------------------CHHHHHhhC
Confidence 799999999998 999998875
No 86
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=1.8e-20 Score=185.76 Aligned_cols=149 Identities=26% Similarity=0.400 Sum_probs=126.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc-----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----- 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----- 158 (482)
..++|+++|.+|+|||||+|+|+++ ++.-.....|+|++.-...|+++++.|.+|||+|.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge---------------eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE---------------ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC---------------ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 4699999999999999999999976 33333456789999999999999999999999993
Q ss_pred -----hhh-HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHHHHHHHHHHHHHH
Q 011581 159 -----ADY-VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EELLQLVELEVRELL 231 (482)
Q Consensus 159 -----~~~-~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~i~~~i~~~l 231 (482)
+.| ...+..++..+|.+++|+||.+|+..|+.+.+.++...|.+ +|+|+||+|++.. +...+..+.+++..+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l 320 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKL 320 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHh
Confidence 333 34456777899999999999999999999999999999999 8899999999874 356666777888888
Q ss_pred hhcCCCCCCccEEEcchhhhH
Q 011581 232 SSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
..+++ .|++++||++|.
T Consensus 321 ~~l~~----a~i~~iSA~~~~ 337 (444)
T COG1160 321 PFLDF----APIVFISALTGQ 337 (444)
T ss_pred ccccC----CeEEEEEecCCC
Confidence 77766 799999999997
No 87
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=3.3e-20 Score=174.48 Aligned_cols=161 Identities=24% Similarity=0.253 Sum_probs=122.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc-----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----- 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----- 158 (482)
..--|+++|.+|+|||||+|+|+++...+.. .....|.+.-...+..++.+++|+||||.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS---------------~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVS---------------PKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeec---------------CCcchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 3456999999999999999999987554443 23334665556667778999999999993
Q ss_pred ---hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 159 ---ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 159 ---~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
+-..+....++..+|++++|||+.+++...+...+..++..+.| +++++||+|+..++.....+. ..+-....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~~~---~~~~~~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLKLI---AFLKKLLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHHHHH---HHHHhhCC
Confidence 12245566778899999999999999999888888888887788 789999999998665322222 22222223
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
+ ..++|+||++|. +++.|++.+..++|.
T Consensus 146 f----~~ivpiSA~~g~------------------n~~~L~~~i~~~Lpe 173 (298)
T COG1159 146 F----KEIVPISALKGD------------------NVDTLLEIIKEYLPE 173 (298)
T ss_pred c----ceEEEeeccccC------------------CHHHHHHHHHHhCCC
Confidence 3 478999999998 788999999988864
No 88
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=5.2e-20 Score=182.47 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=125.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh-----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD----- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~----- 160 (482)
+.|+++|.+|+|||||+|+|++....+ .+...|+|.+..+...++.++.+.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AI---------------V~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAI---------------VSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeE---------------eecCCCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 679999999999999999999763322 235679999999999999999999999999542
Q ss_pred h----HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 Y----VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~----~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
+ ..++..++..||++|||||+..|+.+++.+...+++..+.| +|+|+||+|-...++ ....+-.+|+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e~--------~~~efyslG~ 139 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAEE--------LAYEFYSLGF 139 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccCchhhh--------hHHHHHhcCC
Confidence 3 34456677899999999999999999999999999977788 899999999874322 1222334565
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
-..+++||.+|. |+.+|++++...+|
T Consensus 140 ----g~~~~ISA~Hg~------------------Gi~dLld~v~~~l~ 165 (444)
T COG1160 140 ----GEPVPISAEHGR------------------GIGDLLDAVLELLP 165 (444)
T ss_pred ----CCceEeehhhcc------------------CHHHHHHHHHhhcC
Confidence 357999999998 99999999999885
No 89
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=5.7e-20 Score=190.50 Aligned_cols=150 Identities=25% Similarity=0.292 Sum_probs=116.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~- 162 (482)
...+|+++|++|+|||||+|+|++.. ........|+|.+.....++.++..+.+|||||+.++.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEE---------------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---------------eeecCCCCCceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 45799999999999999999998641 11123356778887777777788899999999974432
Q ss_pred ----------HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 163 ----------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 163 ----------~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
..+...+..+|++|+|+|+.++...++.+.+..+...+.| +|+|+||+|+....+..+.+.+++.+.+.
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLP 314 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcc
Confidence 2334567899999999999999999999999988888998 89999999998433444445555655554
Q ss_pred hcCCCCCCccEEEcchhhhHH
Q 011581 233 SYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
..+ .+|++++||++|.+
T Consensus 315 ~~~----~~~vi~~SA~~g~~ 331 (429)
T TIGR03594 315 FLD----FAPIVFISALTGQG 331 (429)
T ss_pred cCC----CCceEEEeCCCCCC
Confidence 432 47999999999973
No 90
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.82 E-value=1.8e-19 Score=174.92 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=109.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh-----
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY----- 161 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~----- 161 (482)
+|+++|++|+|||||+|+|++..... .....++|.+.....+...+..+.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~---------------vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI---------------TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee---------------cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 68999999999999999998652211 1122334444333334445677999999996432
Q ss_pred ---HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 ---VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ---~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+.+..++..+|++++|+|+++....+ ...+..+...+.| +++|+||+|+...++..+ .+..+....++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~~~~----~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDKLLP----LIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCHHHHHH----HHHHHHhhcCC--
Confidence 334556778999999999999866554 4555666777888 889999999986443332 33333333332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
.+++++||++|. |+++|++.|.+.+|.
T Consensus 139 --~~v~~iSA~~g~------------------gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 139 --KDIVPISALTGD------------------NTSFLAAFIEVHLPE 165 (270)
T ss_pred --CceEEEecCCCC------------------CHHHHHHHHHHhCCC
Confidence 378999999998 899999999988754
No 91
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.7e-19 Score=187.21 Aligned_cols=150 Identities=25% Similarity=0.348 Sum_probs=117.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh--
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~-- 160 (482)
...++|+++|++|+|||||+|+|++.. ........|+|.+.....+..++..+.+|||||+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEE---------------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCC---------------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 356899999999999999999998641 122234568888887777878889999999999632
Q ss_pred --------h-HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 161 --------Y-VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 161 --------~-~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
| ...+..++..+|++|+|+|+.++...++.+.+..+...+.| +++|+||+|+.+.+ ..+.+.+++...+
T Consensus 236 ~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~~-~~~~~~~~~~~~l 313 (435)
T PRK00093 236 KVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVDEK-TMEEFKKELRRRL 313 (435)
T ss_pred chhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCCHH-HHHHHHHHHHHhc
Confidence 2 13345677899999999999999999999999999888988 88999999998643 3344444565555
Q ss_pred hhcCCCCCCccEEEcchhhhHH
Q 011581 232 SSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
.... .+|++++||++|.+
T Consensus 314 ~~~~----~~~i~~~SA~~~~g 331 (435)
T PRK00093 314 PFLD----YAPIVFISALTGQG 331 (435)
T ss_pred cccc----CCCEEEEeCCCCCC
Confidence 4332 47999999999873
No 92
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=7.2e-19 Score=158.22 Aligned_cols=159 Identities=25% Similarity=0.339 Sum_probs=113.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
.++|+++|++|+|||||+++|++.... ..+...+.+.+.....+..++..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV---------------IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce---------------eccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 478999999999999999999864211 11123445555545556667788999999996432
Q ss_pred -------H-HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH-HHHHHHHHHHHHHHh
Q 011581 162 -------V-KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE-ELLQLVELEVRELLS 232 (482)
Q Consensus 162 -------~-~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~i~~~i~~~l~ 232 (482)
. ..+...+..+|++++|+|+.++...+....+..+...+.| +++++||+|+.+.. +..+.+.+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2334556789999999999998887777777777777887 88999999998742 233333334444433
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.. ...+++++||+++. |+.++++.+..
T Consensus 146 ~~----~~~~~~~~Sa~~~~------------------~i~~~~~~l~~ 172 (174)
T cd01895 146 FL----DYAPIVFISALTGQ------------------GVDKLFDAIDE 172 (174)
T ss_pred cc----cCCceEEEeccCCC------------------CHHHHHHHHHH
Confidence 22 24789999999998 88888888765
No 93
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=3.2e-19 Score=158.01 Aligned_cols=148 Identities=24% Similarity=0.269 Sum_probs=110.8
Q ss_pred EEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH-----
Q 011581 89 GTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK----- 163 (482)
Q Consensus 89 ~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~----- 163 (482)
+++|++|+|||||+++|++... ...+...++|.+......+..+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD---------------AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE---------------EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 5799999999999999985411 01122345566665666667788999999999887533
Q ss_pred ---HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 164 ---NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 164 ---~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
.....+..+|++++|+|+.++......+++..++..+.| +++|+||+|+...+.. ...+...++
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH--------HHHHHhcCC----
Confidence 445567889999999999988877788888888888888 8999999999875332 112223332
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++|+++|. |+++++++|.+.
T Consensus 133 ~~~~~~Sa~~~~------------------gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHGR------------------GIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccCC------------------CHHHHHHHHHhh
Confidence 267999999998 899999998764
No 94
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=3.2e-19 Score=160.15 Aligned_cols=159 Identities=20% Similarity=0.222 Sum_probs=106.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
||+++|+.|+|||||+++|++..... . .... .....|+......+..++..+.+|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-~---------~~~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-K---------GLPP--SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-c---------CCcc--cccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 58999999999999999998642110 0 0001 1122344434445566788999999999999998888
Q ss_pred hhcccCCeEEEeecCCCCCh-HHHHHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC--CCCC
Q 011581 167 TGAAQMDGAILVVSGADGPM-PQTKEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE--FPGD 239 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~--~~~~ 239 (482)
..+..+|++++|+|+.+... ......+..+. ..++| +++++||+|+..... .+ ++.++++... ....
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~-~~----~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS-VE----EIKEVFQDKAEEIGRR 142 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCC-HH----HHHHHhccccccccCC
Confidence 88999999999999986432 22223332222 24678 889999999865321 11 2233332221 1123
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.++++++||++|. |+.+++++|..
T Consensus 143 ~~~~~~~Sa~~g~------------------gv~e~~~~l~~ 166 (167)
T cd04160 143 DCLVLPVSALEGT------------------GVREGIEWLVE 166 (167)
T ss_pred ceEEEEeeCCCCc------------------CHHHHHHHHhc
Confidence 5789999999998 89999998853
No 95
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.3e-18 Score=154.52 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=106.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 162 (482)
.++|+++|+.|+|||||+++|.... ...+.....+.+.....+..++ ..+.||||||+++|.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT----------------FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC----------------CcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 5799999999999999999997531 1111112222233333344444 578899999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...++.+|++++|+|+++....+.. ..+..+.. .++| +++|.||+|+....+.. .++..++.+.++.
T Consensus 67 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~-- 140 (165)
T cd01864 67 TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREVL---FEEACTLAEKNGM-- 140 (165)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcCC--
Confidence 8888888999999999999986543332 23333332 3567 88999999997533211 1133444444432
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++||++|. |+.++++.+.+.
T Consensus 141 --~~~~e~Sa~~~~------------------~v~~~~~~l~~~ 164 (165)
T cd01864 141 --LAVLETSAKESQ------------------NVEEAFLLMATE 164 (165)
T ss_pred --cEEEEEECCCCC------------------CHHHHHHHHHHh
Confidence 468999999998 889999988754
No 96
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=1.6e-18 Score=172.97 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=114.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh--
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~-- 160 (482)
....+|+++|++|+|||||+|+|++..... .....+.|.+.....+..++..+.||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i---------------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI---------------VTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee---------------ccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 345799999999999999999998642111 112334455544455666788999999999732
Q ss_pred ------hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 161 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 161 ------~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+.+.....+..+|++|+|+|+.++....+...+..+...+.| .|+|+||+|+.+. ... ++.+.+...
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p-~IlViNKiDl~~~--~~~----~~~~~l~~~ 187 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV-PIFLLNKIDIESK--YLN----DIKAFLTEN 187 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEEhhcCccc--cHH----HHHHHHHhc
Confidence 233344557899999999999988777777777777777888 5678999999652 111 334444332
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
. ...+++++||++|. |+++|+++|.+.+|.
T Consensus 188 ~---~~~~i~~iSAktg~------------------gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 H---PDSLLFPISALSGK------------------NIDGLLEYITSKAKI 217 (339)
T ss_pred C---CCcEEEEEeccCcc------------------CHHHHHHHHHHhCCC
Confidence 2 13579999999998 899999999987753
No 97
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.79 E-value=2e-18 Score=156.24 Aligned_cols=158 Identities=22% Similarity=0.171 Sum_probs=107.2
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
.+...++|+++|+.|+|||||+++|++... . ..+...|. ....+..++..+.+|||||++.
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-------------~--~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~ 70 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-------------D--TISPTLGF----QIKTLEYEGYKLNIWDVGGQKT 70 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-------------C--CcCCcccc----ceEEEEECCEEEEEEECCCCHH
Confidence 344568999999999999999999975300 0 00111121 1223344578899999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHH----HHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA----KQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|...+...+..+|++++|+|+++... ....+.+..+ ...+.| +++|+||+|+..... .+++.+.++...
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~ 144 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGALS-----EEEIREALELDK 144 (173)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCCC-----HHHHHHHhCccc
Confidence 88877788899999999999988632 2222223222 224667 889999999975321 123444444333
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.....++++++||++|. |+.++++++.+
T Consensus 145 ~~~~~~~~~~~Sa~~g~------------------gi~~l~~~l~~ 172 (173)
T cd04154 145 ISSHHWRIQPCSAVTGE------------------GLLQGIDWLVD 172 (173)
T ss_pred cCCCceEEEeccCCCCc------------------CHHHHHHHHhc
Confidence 33346799999999998 89999998754
No 98
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.79 E-value=5.7e-19 Score=143.85 Aligned_cols=95 Identities=36% Similarity=0.640 Sum_probs=83.2
Q ss_pred CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccc-c--ccccCCCCEEEEEEEeCceEeec
Q 011581 382 ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-E--SKMVMPGDRIKMVVELIMPVACE 458 (482)
Q Consensus 382 ~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~-~--~~~~~~g~~~~v~~~~~~p~~~~ 458 (482)
+.++++|+|+|.+|+++ .+|..||++++|+++.+++|+|.+|..+.+. + |+++++||.+.|+|++.+|+|++
T Consensus 2 ~k~~~~f~A~v~vl~~~-----~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~~pi~ve 76 (99)
T PF03143_consen 2 IKAVNRFEAQVIVLDHP-----KPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQKPICVE 76 (99)
T ss_dssp SEEEEEEEEEEEESSGS-----S-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEEEEEEET
T ss_pred CcccCEEEEEEEEEcCC-----ccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeeccceeee
Confidence 45678999999999985 6999999999999999999999999764442 1 58999999999999999999999
Q ss_pred cCCeEEEeeCCcEEEEEEEeeec
Q 011581 459 QGMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 459 ~~~rfilr~~~~tvg~G~v~~v~ 481 (482)
.+.||+|||+|+|+|+|.|++|+
T Consensus 77 ~~~Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 77 PFSRFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp TTTEEEEEETTEEEEEEEEEEE-
T ss_pred cCceEEEccCCeEEEEEEEEEeC
Confidence 99999999999999999999985
No 99
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.79 E-value=9.4e-19 Score=140.34 Aligned_cols=89 Identities=42% Similarity=0.641 Sum_probs=84.2
Q ss_pred CCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCc
Q 011581 291 DLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADI 370 (482)
Q Consensus 291 ~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i 370 (482)
++||+|+|+++|++++.|++++|+|++|.|+.||+++++|.+. .++|++|+.++.+++.|.|||+|+|.|++++..++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~--~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v 79 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGV--TGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDI 79 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCc--EEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHc
Confidence 5699999999999999999999999999999999999999864 89999999999999999999999999999999999
Q ss_pred ccCeEEeCCCC
Q 011581 371 QRGMVLAKPGT 381 (482)
Q Consensus 371 ~~G~vl~~~~~ 381 (482)
++||+||++++
T Consensus 80 ~~G~vl~~~~~ 90 (91)
T cd03693 80 KRGDVAGDSKN 90 (91)
T ss_pred CCcCEEccCCC
Confidence 99999998754
No 100
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.6e-17 Score=166.88 Aligned_cols=135 Identities=28% Similarity=0.399 Sum_probs=110.8
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCC-CCcccccccCChhhhcCCceeeeeeeEe-----ecCCeEEEE
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNS-APKKYDEIDAAPEERARGITINTATVEY-----ETENRHYAH 152 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~-~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-----~~~~~~i~l 152 (482)
+......+||+++||-.||||+|+..|..+....... ....-.+.|....|++||++|......+ +...+-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 3444457899999999999999999997654322211 1122246788999999999998765443 234567899
Q ss_pred EeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 153 iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+|||||.+|..++..+++.+|++++|||+.+|+.-+|.+.++.+-....| +++|+||+|++
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999964
No 101
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=3.3e-18 Score=178.63 Aligned_cols=149 Identities=18% Similarity=0.256 Sum_probs=110.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA---- 159 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~---- 159 (482)
..++|+++|++|+|||||+|+|++.. ....+...|+|.+.....++.++..+.||||||..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~---------------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEE---------------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC---------------cccccCCCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 46899999999999999999998541 11123356777777666677788889999999952
Q ss_pred -----hhHHHH--HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 160 -----DYVKNM--ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 160 -----~~~~~~--~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
++...+ ...+..+|++|+|+|++++...+..+.+..+...+.| +|+|+||+|+.+.+. ...+..++.+.+.
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~-~~~~~~~i~~~l~ 352 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDR-RYYLEREIDRELA 352 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChhH-HHHHHHHHHHhcc
Confidence 332222 3456789999999999999999998888888888888 899999999986432 2223334444443
Q ss_pred hcCCCCCCccEEEcchhhhHH
Q 011581 233 SYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
... ..|++++||++|.|
T Consensus 353 ~~~----~~~~~~~SAk~g~g 369 (472)
T PRK03003 353 QVP----WAPRVNISAKTGRA 369 (472)
T ss_pred cCC----CCCEEEEECCCCCC
Confidence 322 36899999999973
No 102
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=4.8e-18 Score=176.11 Aligned_cols=153 Identities=24% Similarity=0.292 Sum_probs=121.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc--------
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH-------- 158 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~-------- 158 (482)
+|+++|++|+|||||+|+|++... ...+...|+|.+......++.+..+.+|||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~---------------~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD---------------AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc---------------ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 489999999999999999986421 112234577887777777888999999999996
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...+..++..+|++++|+|+.++....+.+.+..++..+.| +++|+||+|+.+.+... .+ +..+++
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~~-------~~-~~~lg~-- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAVA-------AE-FYSLGF-- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCcccccH-------HH-HHhcCC--
Confidence 55666677788899999999999999999999999999988998 88999999987633211 11 223343
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
.+++++||.+|. |+.+|++.+.+.++.
T Consensus 135 --~~~~~vSa~~g~------------------gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 135 --GEPIPISAEHGR------------------GIGDLLDAILELLPE 161 (429)
T ss_pred --CCeEEEeCCcCC------------------ChHHHHHHHHHhcCc
Confidence 368999999998 889999999887754
No 103
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=6.3e-18 Score=153.92 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=106.5
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc--
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH-- 158 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~-- 158 (482)
.+....+|+++|++|+|||||+|+|++... ........|.|.+.....+ + ..+.+|||||+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~ 76 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKK--------------LARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGY 76 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCcceEEEEEEe--C-CcEEEEeCCCCcc
Confidence 345678999999999999999999985410 0011123345555443333 2 36999999995
Q ss_pred --------hhhHHHHHhhc---ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHH
Q 011581 159 --------ADYVKNMITGA---AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEV 227 (482)
Q Consensus 159 --------~~~~~~~~~~~---~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i 227 (482)
.+|...+...+ ..+|++++|+|++.+...++.+.+..+...++| +++++||+|+.+..+... ..+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~-~~~~i 154 (179)
T TIGR03598 77 AKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKKSELNK-QLKKI 154 (179)
T ss_pred ccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHH-HHHHH
Confidence 23433333333 356899999999999999998888888888998 889999999987544433 33467
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhH
Q 011581 228 RELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
++.++..+ ...+++++||++|+
T Consensus 155 ~~~l~~~~---~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 155 KKALKKDA---DDPSVQLFSSLKKT 176 (179)
T ss_pred HHHHhhcc---CCCceEEEECCCCC
Confidence 77777653 24689999999987
No 104
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=4.3e-18 Score=153.21 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=100.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe-EEEEEeCCCch------
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR-HYAHVDCPGHA------ 159 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPG~~------ 159 (482)
+|+++|++|+|||||+++|++.....+ ...+.|.+.....+...+. .+.||||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~----------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA----------------DYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc----------------CCCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 699999999999999999985321111 1122344443344455555 89999999963
Q ss_pred -hhHHHHHhhcccCCeEEEeecCCCC-ChHHH-HHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 160 -DYVKNMITGAAQMDGAILVVSGADG-PMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 160 -~~~~~~~~~~~~~D~~ilVvda~~g-~~~~t-~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
++...+++.+..+|++++|+|+++. ...+. ......+.. .+.| +++|+||+|+.+.....+ .+..++
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~----~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEELFE----LLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchhhHH----HHHHHH
Confidence 2344455666789999999999987 23222 222333332 2566 789999999977444332 223333
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
... ...+++++||+++. |+.++++.+.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~~------------------gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTGE------------------GLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCCC------------------CHHHHHHHHHhh
Confidence 322 13689999999998 889999988754
No 105
>PRK00089 era GTPase Era; Reviewed
Probab=99.77 E-value=9.2e-18 Score=164.97 Aligned_cols=159 Identities=26% Similarity=0.290 Sum_probs=111.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
...|+++|++|+|||||+|+|++....... ...+.|.+.....+..++..+.|+||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs---------------~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVS---------------PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecC---------------CCCCcccccEEEEEEcCCceEEEEECCCCCCchhH
Confidence 457999999999999999999865221111 11122333222233345578999999996332
Q ss_pred -----HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHHHHHHHHHHHHHHhhcC
Q 011581 162 -----VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EELLQLVELEVRELLSSYE 235 (482)
Q Consensus 162 -----~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~i~~~i~~~l~~~~ 235 (482)
...+...+..+|++++|+|++++......+++..+...+.| +++|+||+|+... ++..+ .+..+.+..+
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~l~~----~~~~l~~~~~ 144 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEELLP----LLEELSELMD 144 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHHHHH----HHHHHHhhCC
Confidence 34455667899999999999997777777777777777788 8899999999843 33222 2222322222
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
..+++++||++|. |+++|++.|...+|.
T Consensus 145 ----~~~i~~iSA~~~~------------------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 ----FAEIVPISALKGD------------------NVDELLDVIAKYLPE 172 (292)
T ss_pred ----CCeEEEecCCCCC------------------CHHHHHHHHHHhCCC
Confidence 3678999999988 889999999887753
No 106
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.77 E-value=9.8e-18 Score=150.65 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=100.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY---- 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~---- 161 (482)
++|+++|++|+|||||+++|++... ..+...+.|.......++.++..+.||||||+.+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP----------------EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC----------------ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 4799999999999999999986411 01112234554444455556789999999998421
Q ss_pred ---H-HHHHhhc-ccCCeEEEeecCCCCCh---HHHHHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 162 ---V-KNMITGA-AQMDGAILVVSGADGPM---PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 162 ---~-~~~~~~~-~~~D~~ilVvda~~g~~---~~t~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
. ......+ ..+|++|+|+|+++... ....+.+..+... +.| +++|+||+|+.+..+..+ ..++.
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~-----~~~~~ 138 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFEDLSE-----IEEEE 138 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhhHHH-----HHHhh
Confidence 1 1112222 34699999999987432 2223444445444 677 899999999986433221 22222
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+. ...+++++||++|. |++++++++...+
T Consensus 139 ~~-----~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 167 (168)
T cd01897 139 EL-----EGEEVLKISTLTEE------------------GVDEVKNKACELL 167 (168)
T ss_pred hh-----ccCceEEEEecccC------------------CHHHHHHHHHHHh
Confidence 21 24689999999998 8999999987643
No 107
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=9e-18 Score=150.12 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=102.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCcee-eeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITI-NTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
.++|+++|.+|+|||||++++++.... .+....+.. ......++.....+.+|||||+++|..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV----------------TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC----------------cccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH
Confidence 479999999999999999999853110 000011110 011112222235688999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...+..+|++++|+|+++....+. .+.+..+. ..++| +++++||+|+........ ++..++.+..
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~~---~~~~~~~~~~---- 137 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVSR---EEGQELARKL---- 137 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceecH---HHHHHHHHHc----
Confidence 88888899999999999987543222 22222222 23677 889999999975322111 1334444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++++||++|. |+.++++.|...
T Consensus 138 -~~~~~~~Sa~~~~------------------~i~~l~~~l~~~ 162 (164)
T cd04145 138 -KIPYIETSAKDRL------------------NVDKAFHDLVRV 162 (164)
T ss_pred -CCcEEEeeCCCCC------------------CHHHHHHHHHHh
Confidence 2589999999998 899999988764
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.76 E-value=1e-17 Score=149.43 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=101.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|..++|||||+++|++...... ......|.+ ...+...+..+.+|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------------~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------------IIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------------eecCccccc----eEEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999975310000 000111222 223445678899999999999998888
Q ss_pred hhcccCCeEEEeecCCCCChH-HHHHHHHHHH------HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 167 TGAAQMDGAILVVSGADGPMP-QTKEHILLAK------QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~------~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
..+..+|++|+|+|+++.... .....+..+. ..++| +++|+||+|+.+... .+ ++.+.+........
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~ 137 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDK 137 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCC-HH----HHHHHhCCccccCc
Confidence 889999999999999875432 2222222221 13677 889999999975321 11 22222221111112
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
..+++++||++|. |+++++++|.+
T Consensus 138 ~~~~~~~Sa~~g~------------------gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTGE------------------GLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCCC------------------chHHHHHHHhc
Confidence 3578999999998 89999998853
No 109
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.76 E-value=1.2e-17 Score=149.16 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=103.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeee--eEee--cCCeEEEEEeCCCchhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT--VEYE--TENRHYAHVDCPGHADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~--~~~~~i~liDtPG~~~~ 161 (482)
++|+++|..++|||||+++|++.. +..+...++..+... ..+. .....+.||||||+++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI----------------FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----------------CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 479999999999999999998531 011111222222222 2222 23467899999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHH-HHH--HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHIL-LAK--QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~-~~~--~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
...+...++.+|++++|+|+++....+....+. .+. ..++| +++|+||+|+........ ++..++.+.++
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~~---~~~~~~~~~~~--- 137 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVITN---EEAEALAKRLQ--- 137 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCCH---HHHHHHHHHcC---
Confidence 888888899999999999998755433333222 222 13678 889999999975322211 23444444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+|++++|+++|. |+.++++.|.+
T Consensus 138 --~~~~~~Sa~~~~------------------~v~~l~~~l~~ 160 (162)
T cd04106 138 --LPLFRTSVKDDF------------------NVTELFEYLAE 160 (162)
T ss_pred --CeEEEEECCCCC------------------CHHHHHHHHHH
Confidence 589999999988 88999988864
No 110
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.76 E-value=1e-17 Score=149.60 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=107.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
.+|+++|+.++|||||+++|++..... ......|.+.......++.....+.+||+||+++|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 689999999999999999998542100 011222333333344454445678899999999998888
Q ss_pred HhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 166 ITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
...++.+|++++|+|+++... .+....+..+... ++| +++++||+|+........ .+...+....+ +
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~---~~~~~~~~~~~-----~ 138 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQVST---EEAQEYADENG-----L 138 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcCCH---HHHHHHHHHcC-----C
Confidence 778889999999999987543 3334444444443 356 889999999874221111 13333444333 6
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+++++||++|. |+.++++.|.+.+
T Consensus 139 ~~~~~Sa~~~~------------------~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGE------------------NVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCC------------------CHHHHHHHHHHHh
Confidence 79999999998 8999999988765
No 111
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.9e-17 Score=172.98 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=119.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch---
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA--- 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~--- 159 (482)
...++|+++|.+|+|||||+|+|++... ...+...|+|.+.....+++.+..+.||||||+.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~---------------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE---------------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA 100 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCc---------------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc
Confidence 3457999999999999999999985311 1123456788887777777888899999999975
Q ss_pred -----hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 160 -----DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 160 -----~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
.+...+..++..+|++|+|+|++++......+.+..+...+.| +++|+||+|+...+. +..++ ...
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~-------~~~~~-~~~ 171 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEA-------DAAAL-WSL 171 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccch-------hhHHH-Hhc
Confidence 2444556677899999999999999887777788888888888 899999999865221 11111 123
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
++. . .+++||++|. |+.+|++.|.+.++.
T Consensus 172 g~~---~-~~~iSA~~g~------------------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 172 GLG---E-PHPVSALHGR------------------GVGDLLDAVLAALPE 200 (472)
T ss_pred CCC---C-eEEEEcCCCC------------------CcHHHHHHHHhhccc
Confidence 432 2 3699999998 889999999887754
No 112
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=4.7e-18 Score=150.86 Aligned_cols=147 Identities=24% Similarity=0.266 Sum_probs=103.3
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH-----
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN----- 164 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~----- 164 (482)
++|++|+|||||+++|++... ......|+|++.....+++++..+.+|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ----------------KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc----------------cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 589999999999999975411 11123567777766667777889999999998776431
Q ss_pred -HHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 165 -MITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 165 -~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
....+ ..+|++++|+|+.... +....+..+...++| +++|+||+|+.+...... +...+.+.++ .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~----~~~~~~~~~~-----~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLP-VVVALNMIDEAEKRGIKI----DLDKLSELLG-----V 132 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCC-EEEEEehhhhcccccchh----hHHHHHHhhC-----C
Confidence 22333 4899999999998742 233344455667888 889999999976433222 2223333322 5
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+++++||.+|. |+.++++.|.+.
T Consensus 133 ~~~~iSa~~~~------------------~~~~l~~~l~~~ 155 (158)
T cd01879 133 PVVPTSARKGE------------------GIDELKDAIAEL 155 (158)
T ss_pred CeEEEEccCCC------------------CHHHHHHHHHHH
Confidence 89999999998 888888888764
No 113
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.76 E-value=2e-17 Score=147.53 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=106.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
.+|+++|++++|||||+++|++... ..+...+.+.+.....+..++ ..+.+|||||+.+|..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF----------------DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----------------CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 3799999999999999999985411 112233445444444444444 4588999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHH-HHHH-HHcC--CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEH-ILLA-KQVG--VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~-~~~~--ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....+..+|++++|+|.++....+..+. +..+ ...+ +| +++++||+|+........ ++...+.+..
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~~~---~~~~~~~~~~----- 135 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQVST---EEGEKKAKEL----- 135 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCccCH---HHHHHHHHHh-----
Confidence 88888999999999999987654333332 3322 2333 77 899999999954222111 1233333332
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++++||.++. |+.++++++.+.
T Consensus 136 ~~~~~~~Sa~~~~------------------~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIETSAKAGH------------------NVKELFRKIASA 160 (161)
T ss_pred CCEEEEEeCCCCC------------------CHHHHHHHHHHh
Confidence 3678999999998 899999988764
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.9e-17 Score=148.92 Aligned_cols=157 Identities=17% Similarity=0.086 Sum_probs=104.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
+...+|+++|+.|+|||||+++|+...... ....+++.+.....+...+ ..+.+||+||+.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP----------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 456899999999999999999997531110 1112222233333344444 4578899999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHH---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAK---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|.......+..+|++++|+|+.++...+.... +..+. ..++| ++++.||+|+.+..+........+. +.
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i~~~~~~~~~---~~--- 141 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREVSQQRAEEFS---DA--- 141 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHHHHHH---HH---
Confidence 99888888999999999999987654332222 22222 23577 7889999999754332222221222 21
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
...+++++|+++|. |+.++++.+.+.
T Consensus 142 --~~~~~~~~Sa~~~~------------------gv~~l~~~i~~~ 167 (169)
T cd04114 142 --QDMYYLETSAKESD------------------NVEKLFLDLACR 167 (169)
T ss_pred --cCCeEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 12678999999998 889999988753
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=1.5e-17 Score=148.19 Aligned_cols=152 Identities=24% Similarity=0.200 Sum_probs=101.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|+.++|||||+++|..... . + .. .|+......++..+..+.+|||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~-------~-----~---~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV-------V-----T---TI----PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCC-------c-----C---cC----CccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 589999999999999999964210 0 0 00 121111223445678899999999999988888
Q ss_pred hhcccCCeEEEeecCCCCCh-HHHHHHHH-HHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 167 TGAAQMDGAILVVSGADGPM-PQTKEHIL-LAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~-~~t~e~l~-~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
..+..+|++|+|+|+++... ....+.+. ++.. .+.| +++|+||+|+.+.... . ++.+.+..........
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~-~----~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALSE-A----EISEKLGLSELKDRTW 135 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCCH-H----HHHHHhCccccCCCcE
Confidence 88899999999999987432 22223332 2222 3677 8999999999753211 1 2222222212222346
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+++++||++|. |+.+++++|.+
T Consensus 136 ~~~~~Sa~~~~------------------gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKGE------------------GLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCCC------------------CHHHHHHHHhc
Confidence 89999999998 89999998853
No 116
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.75 E-value=2.6e-17 Score=153.08 Aligned_cols=155 Identities=23% Similarity=0.260 Sum_probs=101.3
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe-EEEEEeCCCc
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR-HYAHVDCPGH 158 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPG~ 158 (482)
..+.+.++|+++|++|+|||||+++|++...... ...+.|++.....+...+. .+.||||||+
T Consensus 36 ~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~ 99 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTGADVYAE----------------DQLFATLDPTTRRLRLPDGREVLLTDTVGF 99 (204)
T ss_pred hhhcCCCeEEEECCCCCCHHHHHHHHhcchhccC----------------CccceeccceeEEEEecCCceEEEeCCCcc
Confidence 3345678999999999999999999986421110 1112233333333444443 8999999997
Q ss_pred hhh--------HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHH
Q 011581 159 ADY--------VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELE 226 (482)
Q Consensus 159 ~~~--------~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~ 226 (482)
.+. ...+...+..+|++++|+|++++..... ......+... ++| +++|+||+|+.......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~~------ 172 (204)
T cd01878 100 IRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEELE------ 172 (204)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHHH------
Confidence 321 1222334568999999999998755433 2333344333 456 89999999998743221
Q ss_pred HHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 227 VRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 227 i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..+.. ...+++++||++|. |+.+++++|...
T Consensus 173 --~~~~~-----~~~~~~~~Sa~~~~------------------gi~~l~~~L~~~ 203 (204)
T cd01878 173 --ERLEA-----GRPDAVFISAKTGE------------------GLDELLEAIEEL 203 (204)
T ss_pred --HHhhc-----CCCceEEEEcCCCC------------------CHHHHHHHHHhh
Confidence 11211 24689999999998 889999988654
No 117
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=1.9e-17 Score=147.75 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=104.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+||+++|+.++|||||+++|++... ..+.....+.+.. ...++.....+.||||||+.+|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 64 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF----------------KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH
Confidence 4899999999999999999985311 1111122222222 223333335678999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHH---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAK---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....++.+|++++|+|+++....+....+ ..+. ..++| ++++.||+|+....+.. .++...+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 136 (161)
T cd04113 65 VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREVT---FLEASRFAQENG---- 136 (161)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccCC---HHHHHHHHHHcC----
Confidence 888888999999999999986654443332 3332 23677 88999999997532211 123444444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++++.+||+++. |+.++++.+.+
T Consensus 137 -~~~~~~Sa~~~~------------------~i~~~~~~~~~ 159 (161)
T cd04113 137 -LLFLETSALTGE------------------NVEEAFLKCAR 159 (161)
T ss_pred -CEEEEEECCCCC------------------CHHHHHHHHHH
Confidence 679999999998 89999998865
No 118
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.75 E-value=1.1e-17 Score=131.93 Aligned_cols=83 Identities=37% Similarity=0.609 Sum_probs=79.2
Q ss_pred CeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCccc
Q 011581 293 PFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372 (482)
Q Consensus 293 ~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 372 (482)
||+|+|+++|+++ .|++++|+|++|++++||+|.++|.+. .++|++|+.++.++++|.|||+|+++|++++..++++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~ 77 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKE--SVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISP 77 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCc--EEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCC
Confidence 7999999999999 999999999999999999999999874 7899999999999999999999999999998899999
Q ss_pred CeEEeC
Q 011581 373 GMVLAK 378 (482)
Q Consensus 373 G~vl~~ 378 (482)
||+|++
T Consensus 78 G~vl~~ 83 (83)
T cd03698 78 GDVLCS 83 (83)
T ss_pred CCEEeC
Confidence 999984
No 119
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.75 E-value=7.2e-18 Score=133.93 Aligned_cols=85 Identities=27% Similarity=0.479 Sum_probs=80.2
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecC--CccceeEEEEEeecccccceeecCCeEEEEEccccccCcc
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGL--KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQ 371 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~--~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 371 (482)
|+|+|+++|++++.|+|++|+|++|.+++||++.++|. +++..++|++|+.++.+++.|.|||+++++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 67999999999999999999999999999999999998 4446899999999999999999999999999999999999
Q ss_pred cCeEEeC
Q 011581 372 RGMVLAK 378 (482)
Q Consensus 372 ~G~vl~~ 378 (482)
+||+||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 120
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=3.6e-17 Score=146.19 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=103.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhc--CCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA--RGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~--~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
++|+++|+.|+|||||+++|+... +..... .+.++......++.....+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG----------------YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC----------------CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh
Confidence 479999999999999999997531 111111 12222222223333445678999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
.....+..+|++|+|+|+++....+.. +.+..++.. ++| +++|+||+|+... .. .+..++.+.. .
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~--~~----~~~~~~~~~~-----~ 132 (161)
T cd04124 65 MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS--VT----QKKFNFAEKH-----N 132 (161)
T ss_pred hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh--HH----HHHHHHHHHc-----C
Confidence 888889999999999999886654443 333444433 677 8899999998532 11 1222333332 3
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.+.+.+
T Consensus 133 ~~~~~~Sa~~~~------------------gv~~l~~~l~~~~ 157 (161)
T cd04124 133 LPLYYVSAADGT------------------NVVKLFQDAIKLA 157 (161)
T ss_pred CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 8889998887643
No 121
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=2.7e-17 Score=164.41 Aligned_cols=150 Identities=18% Similarity=0.187 Sum_probs=102.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCc---
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGH--- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~--- 158 (482)
...++|+++|++|+|||||+|+|++... ..+...+.|.+.....+.. ++..+.||||||+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~----------------~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~ 250 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADV----------------YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD 250 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCce----------------eeccCCccccCCEEEEEEeCCCceEEEEecCccccc
Confidence 4568999999999999999999986411 1112234566555555555 4678999999997
Q ss_pred ------hhhHHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 159 ------ADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 159 ------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
+.| +.+...+..+|++++|+|+++....... .....+..+ +.| +++|+||+|+.+.++. .
T Consensus 251 l~~~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~v--------~ 320 (351)
T TIGR03156 251 LPHELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPRI--------E 320 (351)
T ss_pred CCHHHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHhH--------H
Confidence 223 3345567899999999999986543332 222334433 567 8899999999764221 1
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.... . ..+++++||++|. |+++|++.|.+.
T Consensus 321 ~~~~--~----~~~~i~iSAktg~------------------GI~eL~~~I~~~ 350 (351)
T TIGR03156 321 RLEE--G----YPEAVFVSAKTGE------------------GLDLLLEAIAER 350 (351)
T ss_pred HHHh--C----CCCEEEEEccCCC------------------CHHHHHHHHHhh
Confidence 1111 1 2468999999998 899999988654
No 122
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.75 E-value=1.5e-17 Score=147.11 Aligned_cols=146 Identities=22% Similarity=0.233 Sum_probs=104.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH--
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK-- 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 163 (482)
.+|+++|++|+|||||+++|++.... ......+.|.+.....+...+..+.+|||||+.++..
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA---------------IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE---------------eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 47999999999999999999853110 0111345566665566667788999999999866532
Q ss_pred ------HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 164 ------NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 164 ------~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.+...+..+|++++|+|+.+.........+.. ..+.| +++|+||+|+.+.... . ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~-----------~----~~ 128 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL-----------L----SL 128 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc-----------c----cc
Confidence 34456678999999999998665555444333 34666 8999999999864322 1 11
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
....+++++||.++. |+++|+++|.+.
T Consensus 129 ~~~~~~~~~Sa~~~~------------------~v~~l~~~l~~~ 155 (157)
T cd04164 129 LAGKPIIAISAKTGE------------------GLDELKEALLEL 155 (157)
T ss_pred cCCCceEEEECCCCC------------------CHHHHHHHHHHh
Confidence 124789999999987 889999988764
No 123
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=1.4e-17 Score=146.79 Aligned_cols=150 Identities=28% Similarity=0.283 Sum_probs=102.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
+||+++|++|+|||||+++|++.. .+.+...+++.+.....+..++ ..+.+|||||+.+|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 689999999999999999998531 2223344666666555555566 6788999999988844
Q ss_pred H-------HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 164 N-------MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 164 ~-------~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
. +...+...|.+++|+|+.++...........+.. +.| +++++||+|+.... ...+....+...+
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLN- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhcc-
Confidence 3 3344445566666666555544444444444433 778 88999999998743 2224444555444
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
..+++++||.+|. |+.++++.|.
T Consensus 138 ---~~~~~~~sa~~~~------------------gv~~~~~~l~ 160 (161)
T TIGR00231 138 ---GEPIIPLSAETGK------------------NIDSAFKIVE 160 (161)
T ss_pred ---CCceEEeecCCCC------------------CHHHHHHHhh
Confidence 3569999999998 8888888764
No 124
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=2.6e-17 Score=179.70 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=109.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA---- 159 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~---- 159 (482)
..++|+++|++|+|||||+|+|++... .......|+|.+.....++.++..+.||||||+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~---------------~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER---------------AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc---------------cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcc
Confidence 358999999999999999999986411 1112345677776666677788889999999953
Q ss_pred -----hhHHH--HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 160 -----DYVKN--MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 160 -----~~~~~--~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
+|... ....+..+|++++|+|++++...++...+..+...+.| +|+|+||+|+.+.+. .+.++.++...+.
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~-~~~~~~~~~~~l~ 591 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFR-RQRLERLWKTEFD 591 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhH-HHHHHHHHHHhcc
Confidence 33322 23456789999999999999999999888888888998 899999999986432 2233334443333
Q ss_pred hcCCCCCCccEEEcchhhhH
Q 011581 233 SYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~ 252 (482)
.. ...|++++||++|.
T Consensus 592 ~~----~~~~ii~iSAktg~ 607 (712)
T PRK09518 592 RV----TWARRVNLSAKTGW 607 (712)
T ss_pred CC----CCCCEEEEECCCCC
Confidence 22 23688999999997
No 125
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.74 E-value=3.4e-17 Score=146.32 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=105.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
+||+++|++|+|||||+++|++... .......++.+.....+..++ ..+.+||+||+.+|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF----------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 4899999999999999999985311 111122233333333344444 5688999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....++.+|++|+|+|+++....+....+ ..+.. .++| +++|+||+|+....+... +...++.+..+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~~---~~~~~~~~~~~---- 136 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVSR---EEAEAFAEEHG---- 136 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCCH---HHHHHHHHHcC----
Confidence 888888999999999999885554443322 22222 3567 899999999875322111 12333444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++|+.+|. |+.++++.|.+.+
T Consensus 137 -~~~~e~Sa~~~~------------------~i~~l~~~i~~~~ 161 (164)
T smart00175 137 -LPFFETSAKTNT------------------NVEEAFEELAREI 161 (164)
T ss_pred -CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999988 8899999887754
No 126
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.74 E-value=3.4e-17 Score=147.54 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=103.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|+.++|||||+++|.... +. . .....|.++ ..+...+..+.+|||||+.+|..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~-------~~-----~---~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~ 68 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQ-------SV-----T---TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRP 68 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCC-------Cc-----c---ccCCcccce----EEEEECCEEEEEEECCCCHHHHH
Confidence 45799999999999999999996421 00 0 001112222 22334678899999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCC-hHHHHHHHH-HHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGP-MPQTKEHIL-LAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~-~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...++.+|++|+|+|+++.. .....+.+. .+.. .++| +++|.||+|+.+... . +++.+.++......
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~i~~~~~~~~~~~ 142 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-P----HEIQEKLGLTRIRD 142 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCCC-H----HHHHHHcCCCccCC
Confidence 8888889999999999998743 222233332 2221 3567 899999999864211 1 13344332212222
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
...+++++||++|. |+.+++++|.+
T Consensus 143 ~~~~~~~~SAk~g~------------------gv~~~~~~l~~ 167 (168)
T cd04149 143 RNWYVQPSCATSGD------------------GLYEGLTWLSS 167 (168)
T ss_pred CcEEEEEeeCCCCC------------------ChHHHHHHHhc
Confidence 34578999999998 88999998854
No 127
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1e-16 Score=143.30 Aligned_cols=161 Identities=25% Similarity=0.327 Sum_probs=116.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc-----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----- 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----- 158 (482)
....|+++|.+|+|||||+|+|++... -.......|.|.......+. + .+.|+|.||+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~--------------LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv 85 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKN--------------LARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKV 85 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcc--------------eeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccC
Confidence 457899999999999999999997421 12233566778776665543 2 2899999994
Q ss_pred -----hhhHHHHHhhc---ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 011581 159 -----ADYVKNMITGA---AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVREL 230 (482)
Q Consensus 159 -----~~~~~~~~~~~---~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~ 230 (482)
+.+...+..++ ....++++++|+.+++...+++.++++...++| ++|++||+|+++..+..+.+. .+++.
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~l~-~v~~~ 163 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQLN-KVAEE 163 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHHHH-HHHHH
Confidence 33344444444 356889999999999999999999999999999 889999999999666554443 44433
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+.... + ...-++..|+.++. |+++|.+.|.+++
T Consensus 164 l~~~~-~-~~~~~~~~ss~~k~------------------Gi~~l~~~i~~~~ 196 (200)
T COG0218 164 LKKPP-P-DDQWVVLFSSLKKK------------------GIDELKAKILEWL 196 (200)
T ss_pred hcCCC-C-ccceEEEEeccccc------------------CHHHHHHHHHHHh
Confidence 32211 1 11126777887777 8888888887765
No 128
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.74 E-value=1.3e-17 Score=172.43 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=110.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|++|+|||||+|+|++... .......|.|.+.....+..++..+.+|||||+.++.
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~---------------a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~ 277 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEER---------------AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD 277 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc
Confidence 3457999999999999999999985311 1122345677777777777788899999999986643
Q ss_pred --------HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 163 --------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 163 --------~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
..+...+..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+..... ..
T Consensus 278 ~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~~-----------~~- 342 (449)
T PRK05291 278 DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDLE-----------EE- 342 (449)
T ss_pred cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchhh-----------hc-
Confidence 224456788999999999998776655554443 34667 88999999997632211 11
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...+++++||++|. |+++|++.|.+.+.
T Consensus 343 ----~~~~~i~iSAktg~------------------GI~~L~~~L~~~l~ 370 (449)
T PRK05291 343 ----NGKPVIRISAKTGE------------------GIDELREAIKELAF 370 (449)
T ss_pred ----cCCceEEEEeeCCC------------------CHHHHHHHHHHHHh
Confidence 23678999999998 88899998887653
No 129
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=4.1e-17 Score=151.45 Aligned_cols=156 Identities=16% Similarity=0.129 Sum_probs=103.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeee--eEee-cCCeEEEEEeCCCchhhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT--VEYE-TENRHYAHVDCPGHADYV 162 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~-~~~~~i~liDtPG~~~~~ 162 (482)
++|+++|..|+|||||+++|++... ..+....+..+... ..+. .....+.||||||+++|.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~----------------~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF----------------SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh
Confidence 4799999999999999999985310 01111122222222 2232 334568899999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHH-------HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAK-------QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~-------~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
..+...++.+|++|+|+|.++....+....+ ..+. ..++| +++|.||+|+.+..... .+++.++.+..
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~---~~~~~~~~~~~ 140 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLAKD---GEQMDQFCKEN 140 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCcccccccC---HHHHHHHHHHc
Confidence 8888888999999999999875443332222 2221 13567 89999999997421111 12455566555
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++ .+++++||++|. |+.+++++|.+.+
T Consensus 141 ~~----~~~~e~Sak~~~------------------~v~e~f~~l~~~l 167 (201)
T cd04107 141 GF----IGWFETSAKEGI------------------NIEEAMRFLVKNI 167 (201)
T ss_pred CC----ceEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 43 579999999998 7778887777644
No 130
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.74 E-value=5.2e-17 Score=145.75 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=103.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
.++|+++|..|+|||||+++|++.. ...+...+++.+.....+..+ ...+.+|||||+++|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC----------------CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 4689999999999999999997431 111111222322222233333 3467899999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
......++.+|++|+|+|+++..... ..+.+..+.. .+.| ++++.||+|+........ ++...+.+..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~---- 137 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVDY---SEAQEFADEL---- 137 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCCH---HHHHHHHHHc----
Confidence 88888889999999999998743322 2233333333 2467 889999999865322111 1333344433
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++++||++|. |+.++++.|.+.
T Consensus 138 -~~~~~~~Sa~~~~------------------~v~~~~~~i~~~ 162 (166)
T cd01869 138 -GIPFLETSAKNAT------------------NVEQAFMTMARE 162 (166)
T ss_pred -CCeEEEEECCCCc------------------CHHHHHHHHHHH
Confidence 3689999999998 888888888764
No 131
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.74 E-value=5.8e-17 Score=146.02 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=102.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
++|+++|++|+|||||+++|++... ..+....+..+.....++..+ ..+.+||+||+..|..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS 64 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----------------CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh
Confidence 4899999999999999999985311 001111112222222233333 4567999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHH--HHHHHc------CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHI--LLAKQV------GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l--~~~~~~------~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
.....++.+|++|+|+|+++....+....+ .++... ++| +++|+||+|+..+..... +++..+++..+
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~ 140 (172)
T cd01862 65 LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQVST---KKAQQWCQSNG 140 (172)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccccccccCH---HHHHHHHHHcC
Confidence 888889999999999999875432222211 112221 577 889999999984221111 13344444443
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++++|+++|. |+.++++.+.+.+
T Consensus 141 ----~~~~~~~Sa~~~~------------------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 ----NIPYFETSAKEAI------------------NVEQAFETIARKA 166 (172)
T ss_pred ----CceEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 3689999999998 8889998887643
No 132
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=7.9e-17 Score=143.60 Aligned_cols=157 Identities=25% Similarity=0.253 Sum_probs=105.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
..+|+++|.+|+|||||+++|++....... .....+.......+...+..+.+|||||+.+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS---------------PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc---------------CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 468999999999999999999854211110 11112222222334445678999999996433
Q ss_pred -----HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 -----VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 -----~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......+..+|++++|+|+.+.........+..+...+.| +++++||+|+....+..... ...+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~-- 141 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPL---LEKLKELG-- 141 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHHHHHH---HHHHHhcc--
Confidence 23344567789999999999987666666666777777788 88999999998433222212 22222221
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
...+++++|++++. |++++++.|.+.
T Consensus 142 --~~~~~~~~s~~~~~------------------~~~~l~~~l~~~ 167 (168)
T cd04163 142 --PFAEIFPISALKGE------------------NVDELLEEIVKY 167 (168)
T ss_pred --CCCceEEEEeccCC------------------ChHHHHHHHHhh
Confidence 13688999999988 889999988764
No 133
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=5.6e-17 Score=146.98 Aligned_cols=155 Identities=22% Similarity=0.179 Sum_probs=103.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
...+|+++|+.|+|||||+++|+... +. . ...|+......+..++..+.+|||||+.+|..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~-------~~-----~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGE-------VV-----H-------TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCC-------CC-----C-------cCCccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 35799999999999999999997421 00 0 01122222334555678899999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChH-HHHHHH-HHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMP-QTKEHI-LLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...+..+|++|+|+|+++.... ..++.+ .++.. .++| +++++||+|+..... .+ ++.+.+.......
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PA----EISESLGLTSIRD 148 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCcccccC
Confidence 888888999999999999875332 122222 22222 2467 899999999865211 11 2222222111112
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
..++++++||++|. |+.+++++|.+
T Consensus 149 ~~~~~~~~SA~~g~------------------gi~e~~~~l~~ 173 (174)
T cd04153 149 HTWHIQGCCALTGE------------------GLPEGLDWIAS 173 (174)
T ss_pred CceEEEecccCCCC------------------CHHHHHHHHhc
Confidence 34689999999998 89999998854
No 134
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=4.9e-17 Score=168.80 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=115.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh-----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD----- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~----- 160 (482)
++|+++|++|+|||||+|+|++.... ......|+|.+.....+.+.+..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---------------~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---------------IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---------------eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 57999999999999999999854211 1122456777776667777889999999999887
Q ss_pred ---hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 161 ---YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 161 ---~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
+...+..++..+|++|+|+|+.++......+...+++..+.| +++|+||+|..+.++ ...++ ..+++
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~~-------~~~~~-~~lg~- 136 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEEA-------DAYEF-YSLGL- 136 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccchh-------hHHHH-HhcCC-
Confidence 333345667899999999999999888888888888888998 889999999765221 11222 23343
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++++||.+|. |+.++++.+....
T Consensus 137 ---~~~~~iSa~~g~------------------gv~~l~~~I~~~~ 161 (435)
T PRK00093 137 ---GEPYPISAEHGR------------------GIGDLLDAILEEL 161 (435)
T ss_pred ---CCCEEEEeeCCC------------------CHHHHHHHHHhhC
Confidence 236899999998 8889999987744
No 135
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=3.6e-17 Score=145.62 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=100.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
.+|+++|.+|+|||||+++|++..-. +.. ....+... .....++.....+.+|||||+++|...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~------------~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV------------DEY--DPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc------------CCc--CCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 58999999999999999999853110 000 00000011 1111222223457789999999998888
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHH-HHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
...+..+|++++|+|.++....+... .+..+. ..+.| +++|.||+|+....... .+..++.+.++
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~----~~~~~~~~~~~----- 136 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVSS----RQGQDLAKSYG----- 136 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceecH----HHHHHHHHHhC-----
Confidence 88889999999999998744322221 222222 23667 88999999997632111 13344444433
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++||++|. |+.++++.|.+.
T Consensus 137 ~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 160 (162)
T cd04138 137 IPYIETSAKTRQ------------------GVEEAFYTLVRE 160 (162)
T ss_pred CeEEEecCCCCC------------------CHHHHHHHHHHH
Confidence 579999999998 899999988753
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=99.73 E-value=8.2e-17 Score=149.36 Aligned_cols=160 Identities=24% Similarity=0.311 Sum_probs=102.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~---- 158 (482)
....+|+++|.+|+|||||+++|++.. ...+...|+|.+..... .. .+.+|||||+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~----------------~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~ 66 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKK----------------VRVGKRPGVTRKPNHYD--WG--DFILTDLPGFGFMS 66 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCceeeCceEEe--ec--ceEEEeCCcccccc
Confidence 346799999999999999999997531 11223446666544332 22 5899999994
Q ss_pred -------hhhHHHHHh----hcccCCeEEEeecCCCC-----------ChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh
Q 011581 159 -------ADYVKNMIT----GAAQMDGAILVVSGADG-----------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 159 -------~~~~~~~~~----~~~~~D~~ilVvda~~g-----------~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
+.|...+.. ++..+|++++|+|+... ...++.+++..+...++| +++|+||+|+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~ 145 (201)
T PRK04213 67 GVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKN 145 (201)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCc
Confidence 444433322 34567899999999652 233556777777778999 7899999999764
Q ss_pred HHHHHHHHHHHHHHHhhc-CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 217 EELLQLVELEVRELLSSY-EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~-~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
.+ + ...++.+.+... .+.....+++++||++| + ++++++.|.+.++.
T Consensus 146 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-g------------------i~~l~~~l~~~~~~ 193 (201)
T PRK04213 146 RD--E-VLDEIAERLGLYPPWRQWQDIIAPISAKKG-G------------------IEELKEAIRKRLHE 193 (201)
T ss_pred HH--H-HHHHHHHHhcCCccccccCCcEEEEecccC-C------------------HHHHHHHHHHhhcC
Confidence 31 1 111333322210 01111247899999987 3 57888888876654
No 137
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.73 E-value=6.3e-17 Score=145.49 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=103.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
.++|+++|.+|+|||||++++++.. +..+....+..+.....+... ...+.+|||||+++|.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~ 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS----------------FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc----------------CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH
Confidence 5799999999999999999998531 111111122222222223333 3567899999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
......+..+|++|+|+|+++....+..+ .+..+.. .++| +++|.||+|+.+..+... ++..++.+..+
T Consensus 67 ~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 139 (167)
T cd01867 67 TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVVSK---EEGEALADEYG--- 139 (167)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCH---HHHHHHHHHcC---
Confidence 88878889999999999998755433322 2222322 2567 889999999975322111 13344444433
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++||.+|. |+.++++.+.+.
T Consensus 140 --~~~~~~Sa~~~~------------------~v~~~~~~i~~~ 163 (167)
T cd01867 140 --IKFLETSAKANI------------------NVEEAFFTLAKD 163 (167)
T ss_pred --CEEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 579999999988 888888887654
No 138
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.73 E-value=2.9e-17 Score=146.34 Aligned_cols=141 Identities=26% Similarity=0.335 Sum_probs=98.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----hhhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----ADYV 162 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----~~~~ 162 (482)
+|+++|++|+|||||+++|.+... ..+ .|. ...+... .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-----------------~~~---~~~---~v~~~~~----~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-----------------LAR---KTQ---AVEFNDK----GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-----------------cCc---cce---EEEECCC----CcccCCccccCCHHHH
Confidence 799999999999999999874310 000 111 1122211 26999995 5677
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
..+..++..+|++++|+|++++........+.. ..+.| +++++||+|+.+.+ . ..+.++++..++ ..|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--~----~~~~~~~~~~~~---~~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD--V----AATRKLLLETGF---EEP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc--H----HHHHHHHHHcCC---CCC
Confidence 777888899999999999998765444333222 23566 88999999986522 1 134455555554 269
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++||++|. |+.+|++.+.+.+.
T Consensus 124 ~~~~Sa~~g~------------------gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDPQ------------------SVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCcc------------------CHHHHHHHHHHhch
Confidence 9999999998 89999999988664
No 139
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.73 E-value=1.2e-16 Score=147.55 Aligned_cols=159 Identities=24% Similarity=0.266 Sum_probs=110.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~---- 158 (482)
...++|+++|++|+|||||+++|++... ........|.|.......+ +..+.||||||+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN--------------LARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcC
Confidence 3568899999999999999999985310 0111123345554443322 467999999995
Q ss_pred ------hhhHHHHHhhc---ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 159 ------ADYVKNMITGA---AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 159 ------~~~~~~~~~~~---~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
++|......++ ...+++++|+|+..+......+.+..+...++| +++++||+|+.+..+... +.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~~~-~~~~i~~ 162 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGERKK-QLKKVRK 162 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHHHH-HHHHHHH
Confidence 33433333333 345789999999888777776777777778888 889999999987544332 2234555
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+... ..+++++||+++. |+.++++.|.+.+
T Consensus 163 ~l~~~-----~~~~~~~Sa~~~~------------------gi~~l~~~i~~~~ 193 (196)
T PRK00454 163 ALKFG-----DDEVILFSSLKKQ------------------GIDELRAAIAKWL 193 (196)
T ss_pred HHHhc-----CCceEEEEcCCCC------------------CHHHHHHHHHHHh
Confidence 55432 3688999999998 8899999887765
No 140
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.73 E-value=1.4e-17 Score=132.43 Aligned_cols=87 Identities=72% Similarity=1.163 Sum_probs=80.9
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccC
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRG 373 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 373 (482)
|+|+|+++|+++++|++++|+|++|.+++||.+.++|.+.+..++|++|+.++.++++|.|||+|+++|++++..++.||
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 68999999999999999999999999999999999986434578999999999999999999999999999988999999
Q ss_pred eEEeCCC
Q 011581 374 MVLAKPG 380 (482)
Q Consensus 374 ~vl~~~~ 380 (482)
|+|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999763
No 141
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=5.5e-17 Score=147.59 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=103.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEee----------cCCeEEE
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYE----------TENRHYA 151 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~----------~~~~~i~ 151 (482)
..++|+++|..|+|||||+++|..... ..+....+..+.. ...+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF----------------NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC----------------CccCCCccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 357999999999999999999975311 0111111222221 12221 1235688
Q ss_pred EEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHH
Q 011581 152 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELE 226 (482)
Q Consensus 152 liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~ 226 (482)
||||||+++|.......++.+|++|+|+|+++....+..+ .+..+.. .+.| +++|.||+|+.+...... ++
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~~---~~ 142 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVSE---EQ 142 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccCH---HH
Confidence 9999999999888888899999999999998754433322 2222322 2455 889999999975322111 23
Q ss_pred HHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 227 VRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 227 i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..++.+.++ ++++++||++|. |+.++++.|.+.
T Consensus 143 ~~~~~~~~~-----~~~~e~Sak~~~------------------~v~~l~~~l~~~ 175 (180)
T cd04127 143 AKALADKYG-----IPYFETSAATGT------------------NVEKAVERLLDL 175 (180)
T ss_pred HHHHHHHcC-----CeEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 444555443 579999999998 888888888653
No 142
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.73 E-value=2.8e-17 Score=136.55 Aligned_cols=93 Identities=24% Similarity=0.350 Sum_probs=82.1
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEEEEEEeCceE
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMVVELIMPV 455 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~v~~~~~~p~ 455 (482)
.+++|+|+|.||+++ +.+|.+||++++|+|+.+++|+|.+|..+.+ ++|+++++||.+.|+|++.+|+
T Consensus 2 ~~~~F~A~i~vl~~~----~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi 77 (108)
T cd03704 2 VVTEFEAQIAILELK----RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPI 77 (108)
T ss_pred cccEEEEEEEEEeCC----CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcE
Confidence 367899999999985 2479999999999999999999998864332 3578999999999999999999
Q ss_pred eeccC------CeEEEeeCCcEEEEEEEeee
Q 011581 456 ACEQG------MRFAIREGGKTVGAGVIQSI 480 (482)
Q Consensus 456 ~~~~~------~rfilr~~~~tvg~G~v~~v 480 (482)
|+|.+ |||+||++|+|+|+|.|+++
T Consensus 78 ~~e~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 78 CLEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EEEEcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 99987 89999999999999999864
No 143
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.73 E-value=8.9e-17 Score=148.77 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=104.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
+.|+++|..|+|||||+.++... .+..+....++.+.....+..++ ..+.||||+|+++|..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~----------------~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~ 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDD----------------TFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhC----------------CCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH
Confidence 36899999999999999999742 12222223333333333344444 6678999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.+..+++.+|++|+|+|.++....+....| ..+.. .++| +++|.||+|+.+..+... .+..++.+.. .
T Consensus 65 l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~~---~~~~~~a~~~----~ 136 (202)
T cd04120 65 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREISR---QQGEKFAQQI----T 136 (202)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccCH---HHHHHHHHhc----C
Confidence 888899999999999999986554443332 33332 2566 899999999975332221 1233344332 1
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..+++.+||++|. |+.+++++|.+.
T Consensus 137 ~~~~~etSAktg~------------------gV~e~F~~l~~~ 161 (202)
T cd04120 137 GMRFCEASAKDNF------------------NVDEIFLKLVDD 161 (202)
T ss_pred CCEEEEecCCCCC------------------CHHHHHHHHHHH
Confidence 3679999999998 677777666653
No 144
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.73 E-value=6.3e-17 Score=143.02 Aligned_cols=152 Identities=19% Similarity=0.186 Sum_probs=103.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee--cCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPG~~~~~~ 163 (482)
++|+++|.+++|||||+++|++.... .+.....+.+.....++ .....+.+||+||+..|..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFD----------------ENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS 64 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC----------------CccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH
Confidence 47999999999999999999854211 11111222222223333 3346788999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....+..+|++++|+|+++..... ....+..+... +.| +++++||+|+..+.... .++++++....
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~----- 135 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQVS---TEEAQQFAKEN----- 135 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEccccccccccc---HHHHHHHHHHc-----
Confidence 8888899999999999998743322 23333344443 367 89999999997322211 12444444432
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
..+++.+|+.++. |+.++++.|.
T Consensus 136 ~~~~~~~sa~~~~------------------~i~~~~~~i~ 158 (159)
T cd00154 136 GLLFFETSAKTGE------------------NVEELFQSLA 158 (159)
T ss_pred CCeEEEEecCCCC------------------CHHHHHHHHh
Confidence 3789999999987 8889888874
No 145
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=3.3e-17 Score=145.73 Aligned_cols=152 Identities=24% Similarity=0.213 Sum_probs=102.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|+.|+|||||+++|++... . +.. .|+......++.....+.+|||||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~---------------~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V---------------TTI--PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C---------------CCC--CCcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 589999999999999999986420 0 001 111122223445678899999999999988777
Q ss_pred hhcccCCeEEEeecCCCCC-hHHHHHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 167 TGAAQMDGAILVVSGADGP-MPQTKEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
..+..+|++++|+|+++.. .....+.+.... ..+.| +++|+||+|+..... .+ ++.+.+.........+
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~~~ 135 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGALS-VS----ELIEKLGLEKILGRRW 135 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccccC-HH----HHHHhhChhhccCCcE
Confidence 7888999999999999763 223333333222 23677 889999999976331 11 2223332221222457
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+++++||++|. |+.++++.|..
T Consensus 136 ~~~~~Sa~~~~------------------gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTGD------------------GLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCCC------------------CHHHHHHHHhh
Confidence 99999999998 88999988764
No 146
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=2.7e-17 Score=147.14 Aligned_cols=155 Identities=19% Similarity=0.142 Sum_probs=101.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|++|+|||||+++|++...... ...... .......+......+.+|||||+++|...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDD----------------YDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcc----------------cCCchhhhEEEEEEECCEEEEEEEEECCCcccchHH
Confidence 3799999999999999999985421000 000000 01111222223356789999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHH-HHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEH-ILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
....+..+|++++|+|+++....+.... ...+. ..+.| +++|.||+|+........ ++...+.+.+
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~~---~~~~~~~~~~----- 135 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVST---EEGKELARQW----- 135 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEcH---HHHHHHHHHc-----
Confidence 8888899999999999987543222222 12222 12567 889999999975321111 1333344433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..+++++||++|. |+.++++.|.+.+
T Consensus 136 ~~~~~~~Sa~~~~------------------~i~~l~~~l~~~~ 161 (164)
T smart00173 136 GCPFLETSAKERV------------------NVDEAFYDLVREI 161 (164)
T ss_pred CCEEEEeecCCCC------------------CHHHHHHHHHHHH
Confidence 2689999999998 8899999887654
No 147
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.73 E-value=9.3e-17 Score=143.30 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=100.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|..++|||||+++|... . +. .. ....|..+ ..++.+...+.+|||||+.+|...+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~-----~--~~-----~~---~pt~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLG-----E--IV-----TT---IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-----C--Cc-----cc---CCCCCcce----EEEEECCEEEEEEECCCCHhHHHHH
Confidence 37999999999999999999632 0 00 00 00112111 2234467889999999999998888
Q ss_pred HhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
...++.+|++|+|+|+++.. ..+..+.+..+.. .+.| ++++.||+|+.+.... + ++.+.+....+....
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~~~~~ 135 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMSA-A----EVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCCH-H----HHHHHhCccccCCCC
Confidence 88889999999999998743 2223333333221 2456 8999999998652111 1 222222111122234
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+.++++||++|. |+.+++++|.+
T Consensus 136 ~~~~~~Sak~g~------------------gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSGD------------------GLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCCC------------------CHHHHHHHHhc
Confidence 677899999998 89999998854
No 148
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.73 E-value=5.8e-17 Score=145.92 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=104.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
...+|+++|++|+|||||+++|+....... .....|.+.......+......+.||||||+++|..
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 68 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 357999999999999999999975311000 001123333333333333345788999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....+..+|++|+|+|+++....+... .+..++. .++| +++|.||+|+.+...... ++.+.+.+..+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 140 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREVSY---EEGEAFAKEHG---- 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCCCH---HHHHHHHHHcC----
Confidence 8888889999999999998754433332 2233333 2567 899999999974322111 13344444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++||+.+. |+.++++.+...
T Consensus 141 -~~~~e~Sa~~~~------------------~i~~~~~~~~~~ 164 (168)
T cd01866 141 -LIFMETSAKTAS------------------NVEEAFINTAKE 164 (168)
T ss_pred -CEEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 579999999988 788888877654
No 149
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.73 E-value=8.5e-17 Score=144.14 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=103.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 162 (482)
..+|+++|.+++|||||+++|++... ..+....++.+.....+..++ ..+.+|||||+++|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF----------------NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 46899999999999999999975311 111122223333333333334 467899999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
......+..+|++|+|+|+++....+..+ .+..+.. .++| +++|.||+|+........ ++...+....
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~~~---~~~~~~~~~~---- 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---EEAKAFAEKN---- 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccCCH---HHHHHHHHHc----
Confidence 88888889999999999998644433322 2232322 2466 889999999875322111 1333344332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++++||++|. |+.++++.+.+.
T Consensus 139 -~~~~~~~Sa~~~~------------------~v~~l~~~l~~~ 163 (165)
T cd01868 139 -GLSFIETSALDGT------------------NVEEAFKQLLTE 163 (165)
T ss_pred -CCEEEEEECCCCC------------------CHHHHHHHHHHH
Confidence 3689999999998 889999988764
No 150
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.73 E-value=8.7e-17 Score=144.29 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=102.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|..|+|||||+++|++..- . .. .....|++..............+.+|||||+++|....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-------~-----~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-------T-----SA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-------C-----CC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 6899999999999999999975310 0 00 00011222222222222233568899999999998888
Q ss_pred HhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
...++.+|++++|+|.++....+ ..+.+..+... +.| +++|.||+|+.+...... ++..++.+.++ .
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~~---~~~~~~~~~~~-----~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVSS---ERGRQLADQLG-----F 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccCH---HHHHHHHHHcC-----C
Confidence 88899999999999998743322 23333333332 455 899999999976322111 12333334333 5
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+++++||++|. |+.+|++.+.+.+
T Consensus 139 ~~~~~Sa~~~~------------------gv~~l~~~l~~~~ 162 (165)
T cd01865 139 EFFEASAKENI------------------NVKQVFERLVDII 162 (165)
T ss_pred EEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 79999999998 8999999987654
No 151
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.73 E-value=5.9e-17 Score=144.49 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=103.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|++|+|||||+++|++.... ...+...+.+.......+......+.+|||||+.+|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD--------------PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--------------cccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 47999999999999999999753110 0011222333332333333334678999999999998877
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHHH-HHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
...++.+|++++|+|.++....+.... +..+.. .++| +++|.||+|+.......+ +..++.+.. .
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~~----~~~~~~~~~-----~ 136 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTRE----EGLKFARKH-----N 136 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCHH----HHHHHHHHc-----C
Confidence 778889999999999987554333222 232322 3566 789999999974321111 333344432 3
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++++++|+++|. |+.++++.+.+
T Consensus 137 ~~~~~~Sa~~~~------------------gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFIETSAKTRD------------------GVQQAFEELVE 159 (161)
T ss_pred CEEEEEecCCCC------------------CHHHHHHHHHH
Confidence 689999999998 88999988765
No 152
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.73 E-value=1e-16 Score=144.44 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=103.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeee--eEeecCCeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT--VEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~~~~i~liDtPG~~~~ 161 (482)
...+|+++|..|+|||||+++++... +..+....++.+... ..+......+.||||||+++|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK----------------FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC----------------CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 45899999999999999999997421 111111222222222 223333456789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHH-------HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAK-------QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~-------~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
.......++.+|++++|+|.++....+....+ ..+. ..++| +++|.||+|+....... +++.++++.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~ 142 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQVST----EEAQAWCRE 142 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccccccCH----HHHHHHHHH
Confidence 88888888999999999999875433322211 1111 12467 88999999986321111 245555555
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++. .+++++||++|. |+.++++.+.+
T Consensus 143 ~~~----~~~~e~Sa~~~~------------------~v~~~~~~~~~ 168 (170)
T cd04116 143 NGD----YPYFETSAKDAT------------------NVAAAFEEAVR 168 (170)
T ss_pred CCC----CeEEEEECCCCC------------------CHHHHHHHHHh
Confidence 542 579999999998 88888888765
No 153
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=1.2e-16 Score=143.44 Aligned_cols=159 Identities=20% Similarity=0.194 Sum_probs=103.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
.+|+++|+.|+|||||+++|....- . ...+. .....++. ..+......+.+|||||+.++...+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~-------~-----~~~~~-~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF-------P-----ENVPR-VLPEITIP---ADVTPERVPTTIVDTSSRPQDRANL 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC-------C-----ccCCC-cccceEee---eeecCCeEEEEEEeCCCchhhhHHH
Confidence 3799999999999999999985311 0 00000 00011111 1223355678999999999888877
Q ss_pred HhhcccCCeEEEeecCCCCChHHHH-H-HHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTK-E-HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~-e-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
...+..+|++++|+|+++....+.. + .+..++. .++| +++|+||+|+.+..... ..+.++..+.+.+.- ..
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~ 139 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IE 139 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---cc
Confidence 7788999999999999886654442 2 2233332 3567 89999999997643211 112233333333321 13
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+++++||++|. |+.++++.+...+
T Consensus 140 ~~~e~Sa~~~~------------------~v~~lf~~~~~~~ 163 (166)
T cd01893 140 TCVECSAKTLI------------------NVSEVFYYAQKAV 163 (166)
T ss_pred EEEEecccccc------------------CHHHHHHHHHHHh
Confidence 79999999998 8889998887643
No 154
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=6.9e-17 Score=148.40 Aligned_cols=158 Identities=21% Similarity=0.196 Sum_probs=105.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.....+|+++|+.|+|||||+++|.+.... ....|+......+..++..+.+||+||+.++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-------------------~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-------------------QHVPTLHPTSEELTIGNIKFKTFDLGGHEQA 76 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-------------------ccCCccCcceEEEEECCEEEEEEECCCCHHH
Confidence 345689999999999999999999753110 0001222222345556788999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
...+...+..+|++++|+|+++... ....+.+..+. ..+.| +++++||+|+..... . +++++.+.....
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~~~-~----~~~~~~~~~~~~ 150 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGAVS-E----EELRQALGLYGT 150 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCCcC-H----HHHHHHhCcccc
Confidence 8877788899999999999986422 22223332222 23577 889999999864211 1 133444432211
Q ss_pred -----------CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 237 -----------PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 237 -----------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.....+++++||++|. |+.+++++|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~------------------gv~e~~~~l~~~ 189 (190)
T cd00879 151 TTGKGVSLKVSGIRPIEVFMCSVVKRQ------------------GYGEAFRWLSQY 189 (190)
T ss_pred cccccccccccCceeEEEEEeEecCCC------------------ChHHHHHHHHhh
Confidence 1123678999999998 899999998764
No 155
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=8.3e-17 Score=143.70 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=99.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|.+|+|||||++++....- . . +....+. .......++.....+.||||||+++|...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-------~-----~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-------V-----E----KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-------C-----c----ccCCchhhhEEEEEEECCEEEEEEEEECCCccccchH
Confidence 5899999999999999999984310 0 0 0000000 01111222222355778999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
....++.+|++++|+|.++..... ..+.+..+.. .++| +++|.||+|+.+...... ++...+.+.++
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVSR---EEGQALARQWG---- 137 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceecH---HHHHHHHHHcC----
Confidence 777889999999999998744322 2222233322 2567 889999999875322211 12233333332
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.|++++||++|. |+.++++.+.+.
T Consensus 138 -~~~~~~Sa~~~~------------------~v~~l~~~l~~~ 161 (163)
T cd04136 138 -CPFYETSAKSKI------------------NVDEVFADLVRQ 161 (163)
T ss_pred -CeEEEecCCCCC------------------CHHHHHHHHHHh
Confidence 689999999998 889999988764
No 156
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=9.6e-17 Score=144.00 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=101.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCc-eeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|+.|+|||||++++++..- . .+....+ ........+......+.+|||||+++|...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-------~---------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-------R---------ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAM 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-------C---------CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHH
Confidence 6899999999999999999985310 0 0000000 011112223334466889999999999887
Q ss_pred HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
....+..+|++|+|+|.++..... ....+..+.. .++| +++|.||+|+....+... .+...+...+
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~--- 138 (165)
T cd04140 66 QRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVSS---NEGAACATEW--- 138 (165)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeecH---HHHHHHHHHh---
Confidence 777788999999999998865433 2333333333 3577 889999999965322211 1222233322
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++++||++|. |+.++++.|.+.
T Consensus 139 --~~~~~e~SA~~g~------------------~v~~~f~~l~~~ 163 (165)
T cd04140 139 --NCAFMETSAKTNH------------------NVQELFQELLNL 163 (165)
T ss_pred --CCcEEEeecCCCC------------------CHHHHHHHHHhc
Confidence 3678999999998 899999988753
No 157
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.72 E-value=1.2e-16 Score=144.39 Aligned_cols=161 Identities=22% Similarity=0.213 Sum_probs=105.8
Q ss_pred hhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 78 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 78 ~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
++.+.....+|+++|+.|+|||||+++|.+... .......|.++ ..++..+..+.+||+||
T Consensus 7 ~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~---------------~~~~~t~g~~~----~~i~~~~~~~~~~D~~G 67 (173)
T cd04155 7 KLRKSSEEPRILILGLDNAGKTTILKQLASEDI---------------SHITPTQGFNI----KTVQSDGFKLNVWDIGG 67 (173)
T ss_pred HhhccCCccEEEEEccCCCCHHHHHHHHhcCCC---------------cccCCCCCcce----EEEEECCEEEEEEECCC
Confidence 334445578999999999999999999975310 00011122222 23444578899999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHH----HHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA----KQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
+.+|...+...+..+|++++|+|+.+... ......+... ...++| +++++||+|+.+..+. + ++.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~-~----~i~~~l~ 141 (173)
T cd04155 68 QRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAPA-E----EIAEALN 141 (173)
T ss_pred CHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCCH-H----HHHHHcC
Confidence 99988877788889999999999986322 2222222222 234678 8899999998763221 1 2222222
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
...+.....+++++||++|. |+++++++|.+
T Consensus 142 ~~~~~~~~~~~~~~Sa~~~~------------------gi~~~~~~l~~ 172 (173)
T cd04155 142 LHDLRDRTWHIQACSAKTGE------------------GLQEGMNWVCK 172 (173)
T ss_pred CcccCCCeEEEEEeECCCCC------------------CHHHHHHHHhc
Confidence 22222234568899999998 89999998864
No 158
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=6.3e-17 Score=148.94 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=103.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
++|+++|..|+|||||+++|+......+ +...++..+.. ...+......+.||||||+.+|..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG---------------NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS 65 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc---------------CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4799999999999999999975311000 11111122222 222322345788999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....+..+|++|+|+|+++....+ ....+..+... ++| +++|+||+|+........ .+...+.+.++
T Consensus 66 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~~---~~~~~l~~~~~---- 137 (191)
T cd04112 66 VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVKR---EDGERLAKEYG---- 137 (191)
T ss_pred hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccCH---HHHHHHHHHcC----
Confidence 7778888999999999998754322 22233333332 567 889999999964221111 13334444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.+.
T Consensus 138 -~~~~e~Sa~~~~------------------~v~~l~~~l~~~~~ 163 (191)
T cd04112 138 -VPFMETSAKTGL------------------NVELAFTAVAKELK 163 (191)
T ss_pred -CeEEEEeCCCCC------------------CHHHHHHHHHHHHH
Confidence 589999999998 88999999887653
No 159
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.72 E-value=2.8e-17 Score=143.60 Aligned_cols=136 Identities=26% Similarity=0.259 Sum_probs=92.1
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----hhhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----ADYV 162 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----~~~~ 162 (482)
+|+++|++|+|||||+++|++... ....|+. .++.. .+|||||+ ..+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--------------------~~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--------------------LYKKTQA-----VEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--------------------cccccee-----EEEcC---eeecCchhhhhhHHHH
Confidence 799999999999999999974310 0001221 12222 68999997 3445
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
..+...++.+|++|+|+|++++...+..+.+. ..+.| +++|+||+|+.+.....+ +..++++..++ .+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~~~p-~ilv~NK~Dl~~~~~~~~----~~~~~~~~~~~----~~ 121 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFAS---IFVKP-VIGLVTKIDLAEADVDIE----RAKELLETAGA----EP 121 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHH---hccCC-eEEEEEeeccCCcccCHH----HHHHHHHHcCC----Cc
Confidence 55555678999999999999877655543332 23446 888999999975322111 33444444432 47
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
++++||++|. |+.++++.|.
T Consensus 122 ~~~~Sa~~~~------------------gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFEISSVDEQ------------------GLEALVDYLN 141 (142)
T ss_pred EEEEecCCCC------------------CHHHHHHHHh
Confidence 8999999998 8899988874
No 160
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=6.6e-17 Score=145.73 Aligned_cols=155 Identities=20% Similarity=0.155 Sum_probs=103.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|..++|||||+++|.+.. +. ....|+......++..+..+.+|||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-------~~------------~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-------FM------------QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-------CC------------CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 58999999999999999997531 00 011122222233555778899999999999988888
Q ss_pred hhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC-CCCC
Q 011581 167 TGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF-PGDD 240 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~-~~~~ 240 (482)
..+..+|++++|+|+++... ....+.+..+.. .+.| +++|.||+|+.+... . +++.++++...+ ....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-V----EEMTELLSLHKLCCGRS 135 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccCCC-H----HHHHHHhCCccccCCCc
Confidence 88899999999999987432 222333332321 1356 899999999864211 1 133333332221 1123
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.+.
T Consensus 136 ~~~~~~Sa~~g~------------------gv~~~f~~l~~~~~ 161 (169)
T cd04158 136 WYIQGCDARSGM------------------GLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEeCcCCCCC------------------CHHHHHHHHHHHHh
Confidence 578899999998 89999999987654
No 161
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=1.1e-16 Score=146.34 Aligned_cols=160 Identities=21% Similarity=0.269 Sum_probs=101.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe-ecCCeEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY-ETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~-~~~~~~i~liDtPG~~~~~~ 163 (482)
.++|+++|+.|+|||||++++++... .. .....|.+........ +..+..+.+|||||+++|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~------------~~---~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF------------VN---TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc------------CC---cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 46899999999999999999974210 00 0011122222111111 22456799999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-H----HHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC-
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-K----EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP- 237 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~----e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~- 237 (482)
.+...++.+|++|+|+|+++...... . +........+.| +++|+||+|+...... .++..++......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~~-----~~~~~~~~~~~~~~ 141 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALSV-----SEVEKLLALHELSA 141 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCCH-----HHHHHHhCccccCC
Confidence 77777889999999999987532221 1 222222335678 8899999998642111 1222222211111
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
...++++++||++|. |+.++++.|.+.+
T Consensus 142 ~~~~~~~~~SA~~~~------------------gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQPACAIIGE------------------GLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEEEeecccCC------------------CHHHHHHHHHHHH
Confidence 123678999999998 8888888877644
No 162
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.72 E-value=1.4e-16 Score=142.67 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=101.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
++|+++|++++|||||+++|++... ..+....+..+.. ...+......+.||||||+.+|..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF----------------VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH
Confidence 4899999999999999999985311 1111222222222 222333346788999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH--------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ--------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~--------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
.....+..+|++|+|+|.++....+... .+..+.. .+.| +++|.||+|+.+...... .+...+....
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~ 140 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAVSE---DEGRLWAESK 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcccccccCH---HHHHHHHHHc
Confidence 8777889999999999998754322222 2222222 2355 899999999974211111 1223333333
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+ ++++++||++|. |+.++++.|.+.
T Consensus 141 ~-----~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 165 (168)
T cd04119 141 G-----FKYFETSACTGE------------------GVNEMFQTLFSS 165 (168)
T ss_pred C-----CeEEEEECCCCC------------------CHHHHHHHHHHH
Confidence 2 679999999998 889999988764
No 163
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.72 E-value=9e-17 Score=129.64 Aligned_cols=92 Identities=40% Similarity=0.772 Sum_probs=83.8
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeE
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRF 463 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rf 463 (482)
+++.|+|++.||++.++++..+|..||++++|+++.++.|+|..+. ++..+++||.+.|+|++.+|+++++++||
T Consensus 2 ~~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~-----~~~~l~~g~~~~v~i~l~~p~~~~~g~rf 76 (93)
T cd03706 2 PHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPP-----GKEMVMPGEDTKVTLILRRPMVLEKGQRF 76 (93)
T ss_pred cceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCC-----CCcEeCCCCEEEEEEEECCcEEEeeCCEE
Confidence 4689999999999876666689999999999999999999999884 25679999999999999999999999999
Q ss_pred EEeeCCcEEEEEEEeee
Q 011581 464 AIREGGKTVGAGVIQSI 480 (482)
Q Consensus 464 ilr~~~~tvg~G~v~~v 480 (482)
+||++++|+|+|+|+++
T Consensus 77 ~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 77 TLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EEEECCEEEEEEEEEeC
Confidence 99999999999999875
No 164
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.72 E-value=1.6e-16 Score=144.15 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=104.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
...+|+++|..++|||||+++|... . +. + ... |+......+..+...+.+|||||+.+|..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~-----~--~~-----~-----~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLG-----E--SV-----T-----TIP--TIGFNVETVTYKNISFTVWDVGGQDKIRP 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-----C--CC-----C-----cCC--ccccceEEEEECCEEEEEEECCCChhhHH
Confidence 3589999999999999999999532 1 00 0 011 22111223344678899999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...+..+|++|+|+|+++.. .....+.+..+.. .++| +++|.||+|+.+.... .++.+.+.......
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-----~~i~~~~~~~~~~~ 146 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMKA-----AEITEKLGLHSIRD 146 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCCH-----HHHHHHhCccccCC
Confidence 8888889999999999998743 2333444443322 2466 8999999998752111 12222222111222
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..+.++++||++|. |+.+++++|.+.
T Consensus 147 ~~~~~~~~Sa~~g~------------------gv~e~~~~l~~~ 172 (175)
T smart00177 147 RNWYIQPTCATSGD------------------GLYEGLTWLSNN 172 (175)
T ss_pred CcEEEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 34567799999998 899999998764
No 165
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=1.2e-16 Score=143.38 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=102.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhh--cCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER--ARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~--~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
.++|+++|+.++|||||+++|.... +..+. ..|.........++.....+.+|||||+++|.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKK----------------FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 3689999999999999999997431 00011 11122222222233234567899999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
......++.+|++|+|+|.++....+... .+..... .+.| +++|.||+|+....+... ++..++.+..
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~~---~~~~~~~~~~---- 137 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVTY---EEAKQFADEN---- 137 (166)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcCH---HHHHHHHHHc----
Confidence 88888899999999999999855433332 2233322 2455 889999999975332211 2334444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
..+++++||++|. |+.++++.+..
T Consensus 138 -~~~~~e~Sa~~~~------------------~i~e~f~~l~~ 161 (166)
T cd04122 138 -GLLFLECSAKTGE------------------NVEDAFLETAK 161 (166)
T ss_pred -CCEEEEEECCCCC------------------CHHHHHHHHHH
Confidence 3689999999998 78888877654
No 166
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=1.6e-16 Score=144.89 Aligned_cols=158 Identities=22% Similarity=0.197 Sum_probs=104.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|..++|||||+++|... . +. . ... |+......++.++..+.+||+||+.+|.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~-----~--~~-----~-----~~p--t~g~~~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLG-----E--IV-----T-----TIP--TIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC-----C--Cc-----c-----ccC--CcceeEEEEEECCEEEEEEECCCCHHHH
Confidence 34579999999999999999999632 0 00 0 011 1111222345567889999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHH-HH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~-~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...++.+|++|+|+|+++... ...++.+... .. .++| ++++.||+|+.+..+. +++.+.+.-..+.
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~~-----~~~~~~l~l~~~~ 149 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMNA-----AEITDKLGLHSLR 149 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCCH-----HHHHHHhCccccC
Confidence 888888999999999999987433 2222222222 11 2566 8999999998763211 1333333221222
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
...+.++++||++|+ |+.+++++|.+.+
T Consensus 150 ~~~~~~~~~Sa~~g~------------------gv~e~~~~l~~~~ 177 (181)
T PLN00223 150 QRHWYIQSTCATSGE------------------GLYEGLDWLSNNI 177 (181)
T ss_pred CCceEEEeccCCCCC------------------CHHHHHHHHHHHH
Confidence 233456789999998 8999999987654
No 167
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.72 E-value=6.8e-17 Score=126.96 Aligned_cols=82 Identities=34% Similarity=0.506 Sum_probs=77.3
Q ss_pred CeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCccc
Q 011581 293 PFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372 (482)
Q Consensus 293 ~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~ 372 (482)
||+|+|+++|+.. |++++|+|++|.+++||++.++|.+. .++|++|+.++.++++|.|||+|+++|++++..++++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~ 76 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKT--QVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISP 76 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCc--EEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCC
Confidence 7999999999864 89999999999999999999999874 7899999999999999999999999999999999999
Q ss_pred CeEEeC
Q 011581 373 GMVLAK 378 (482)
Q Consensus 373 G~vl~~ 378 (482)
||+|++
T Consensus 77 G~vl~~ 82 (82)
T cd04089 77 GFVLCS 82 (82)
T ss_pred CCEEeC
Confidence 999984
No 168
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.72 E-value=1.5e-16 Score=147.46 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=105.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+++|++.. +..+....+..+.....+...+ ..+.||||||++.|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT----------------FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH
Confidence 46899999999999999999997431 0111111222222233333333 46789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.......++.+|++++|+|+++....+. .+.+..+... .+| +++|.||+|+........ .+..++.+..+
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~~---~~~~~~~~~~~--- 141 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVET---EDAYKFAGQMG--- 141 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC---
Confidence 8888888899999999999987544332 2233333322 356 889999999975322211 23344444433
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.+++++|.+.+
T Consensus 142 --~~~~e~Sa~~~~------------------gi~~lf~~l~~~~ 166 (199)
T cd04110 142 --ISLFETSAKENI------------------NVEEMFNCITELV 166 (199)
T ss_pred --CEEEEEECCCCc------------------CHHHHHHHHHHHH
Confidence 679999999998 8888888887754
No 169
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1.5e-16 Score=173.90 Aligned_cols=155 Identities=19% Similarity=0.255 Sum_probs=120.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch-----
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA----- 159 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~----- 159 (482)
..+|+++|++|+|||||+|+|++... ...+...|+|.+......++.+..+.+|||||+.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~---------------~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~ 339 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRRE---------------AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG 339 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc---------------eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc
Confidence 47899999999999999999985311 1123356888887777778888999999999965
Q ss_pred ---hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 160 ---DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 160 ---~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.+...+..++..+|++|+|+|+.++......+.+..++..+.| +|+|+||+|+..... ...++. ..++
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~~~~~~-------~~~~~~-~lg~ 410 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDDQASEY-------DAAEFW-KLGL 410 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccccchh-------hHHHHH-HcCC
Confidence 3556667778899999999999999988888888888888998 889999999865321 111111 2233
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
. ..+++||++|. |+.+|++.|.+.++.
T Consensus 411 ~----~~~~iSA~~g~------------------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 411 G----EPYPISAMHGR------------------GVGDLLDEALDSLKV 437 (712)
T ss_pred C----CeEEEECCCCC------------------CchHHHHHHHHhccc
Confidence 2 24689999998 899999999887754
No 170
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.71 E-value=6.7e-17 Score=175.82 Aligned_cols=153 Identities=24% Similarity=0.278 Sum_probs=111.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH-
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK- 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~- 163 (482)
..+|+++|++|+|||||+|+|++..... ....|+|++.....++.++..+.++||||+.+|..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v----------------gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV----------------GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc----------------CCCCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 4689999999999999999998642211 23468899888888888899999999999877632
Q ss_pred -------HH--Hhh--cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 164 -------NM--ITG--AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 164 -------~~--~~~--~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
+. ... ...+|++++|+|+++.... ...+..+..+++| +++++||+|+.+...... +++++.+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~--l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i~i----d~~~L~~ 139 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLERN--LYLTLQLLELGIP-CIVALNMLDIAEKQNIRI----DIDALSA 139 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcchhh--HHHHHHHHHcCCC-EEEEEEchhhhhccCcHH----HHHHHHH
Confidence 11 112 2378999999999875433 3344566778999 889999999875322221 2333333
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++ +|++++||.+|. |++++.+.+.+..
T Consensus 140 ~LG-----~pVvpiSA~~g~------------------GIdeL~~~I~~~~ 167 (772)
T PRK09554 140 RLG-----CPVIPLVSTRGR------------------GIEALKLAIDRHQ 167 (772)
T ss_pred HhC-----CCEEEEEeecCC------------------CHHHHHHHHHHhh
Confidence 333 689999999988 7888888877654
No 171
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.5e-16 Score=157.89 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=106.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCchh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD--- 160 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~--- 160 (482)
...|+++|.+|||||||+++|+.....++. ..+.|+......+.+ +...++++|+||..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~----------------ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIAD----------------YPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS 221 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCC----------------CCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC
Confidence 456999999999999999999864222221 223466666555655 557899999999632
Q ss_pred ----hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 011581 161 ----YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVREL 230 (482)
Q Consensus 161 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~ 230 (482)
+...+++.+..+|++|+|+|+++....+. ......+.. .+.| +++|+||+|+.+..+..+. +++.+
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~~---~~~~~ 297 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEEREK---RAALE 297 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHHH---HHHHH
Confidence 44566677788999999999986432222 222233332 2566 8899999999864433221 22222
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++.. ..+++++||+++. |+.+|+++|.+.+.
T Consensus 298 ~~~~-----~~~i~~iSAktg~------------------GI~eL~~~L~~~l~ 328 (335)
T PRK12299 298 LAAL-----GGPVFLISAVTGE------------------GLDELLRALWELLE 328 (335)
T ss_pred HHhc-----CCCEEEEEcCCCC------------------CHHHHHHHHHHHHH
Confidence 3322 2679999999998 89999999887654
No 172
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=149.29 Aligned_cols=158 Identities=13% Similarity=0.072 Sum_probs=104.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++... .......|.+.......+......+.||||||+++|..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV---------------EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC---------------CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 457999999999999999999985411 00011112222222223333345788999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHH-HHH-HHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKE-HIL-LAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~-~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.....++.+|++|+|+|+++....+... .+. .+.. .+.| +++|.||+|+........ ++...+....
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~~---~~~~~~~~~~--- 150 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVSR---EEGMALAKEH--- 150 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccCH---HHHHHHHHHc---
Confidence 8888899999999999998755444332 221 2221 2456 788999999975322111 1223333333
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++++||++|. |++++++.|.+.+
T Consensus 151 --~~~~~e~SAk~~~------------------~v~~l~~~l~~~~ 176 (211)
T PLN03118 151 --GCLFLECSAKTRE------------------NVEQCFEELALKI 176 (211)
T ss_pred --CCEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 3679999999998 7888888887654
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.4e-16 Score=161.03 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=107.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHAD---- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~---- 160 (482)
-.|+++|.+|+|||||+|+|++.....+ ...+.|.......+...+ ..++|+||||..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs----------------~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVA----------------DYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccccc----------------CCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 3699999999999999999986432211 233456666666665554 4699999999643
Q ss_pred ---hHHHHHhhcccCCeEEEeecCCC----CChHHHHHHHHHHHHc-----CCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 161 ---YVKNMITGAAQMDGAILVVSGAD----GPMPQTKEHILLAKQV-----GVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 161 ---~~~~~~~~~~~~D~~ilVvda~~----g~~~~t~e~l~~~~~~-----~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
....++..+..+|++++|+|++. ....+....+..+..+ +.| +++|+||+|+...++..+ .+.
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~~el~~----~l~ 298 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDEEEAEE----RAK 298 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCChHHHHH----HHH
Confidence 34556677889999999999872 2223333333444432 567 788999999986544332 233
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++.+.+++ ..+++++||+++. |+.+|++.|.+.++
T Consensus 299 ~l~~~~~~---~~~Vi~ISA~tg~------------------GIdeLl~~I~~~L~ 333 (390)
T PRK12298 299 AIVEALGW---EGPVYLISAASGL------------------GVKELCWDLMTFIE 333 (390)
T ss_pred HHHHHhCC---CCCEEEEECCCCc------------------CHHHHHHHHHHHhh
Confidence 33333332 2478999999998 88899998888764
No 174
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=2.5e-16 Score=142.10 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=101.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
.++|+++|+.|+|||||+++++... .+.+....+..+.....+..+ ...+.+|||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR----------------FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC----------------CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 4789999999999999999997421 111112222333333333333 3678899999999987
Q ss_pred H-HHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 163 K-NMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 163 ~-~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
. .....++.+|++++|+|+++....+....+ ..+.. .++| +++|.||+|+....+... .+..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~-- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVPT---DLAQRFADAH-- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCCH---HHHHHHHHHc--
Confidence 4 355567899999999999986654444333 33333 2477 889999999865332211 1223333332
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++++||+++.+ ..++.+++..|...
T Consensus 140 ---~~~~~e~Sa~~~~~---------------~~~i~~~f~~l~~~ 167 (170)
T cd04115 140 ---SMPLFETSAKDPSE---------------NDHVEAIFMTLAHK 167 (170)
T ss_pred ---CCcEEEEeccCCcC---------------CCCHHHHHHHHHHH
Confidence 37899999998421 01677887777654
No 175
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.70 E-value=1.6e-16 Score=131.92 Aligned_cols=92 Identities=20% Similarity=0.387 Sum_probs=82.6
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccc--------cccccCCCCEEEEEEEeCceE
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE--------ESKMVMPGDRIKMVVELIMPV 455 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~--------~~~~~~~g~~~~v~~~~~~p~ 455 (482)
.++.|+|+|+|++++ .||.+||++.+|+++..++|+|.+|....|. +++++++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNVD-----KPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeE
Confidence 367899999999975 5899999999999999999999998765432 467899999999999999999
Q ss_pred eeccC------CeEEEeeCCcEEEEEEEeee
Q 011581 456 ACEQG------MRFAIREGGKTVGAGVIQSI 480 (482)
Q Consensus 456 ~~~~~------~rfilr~~~~tvg~G~v~~v 480 (482)
|++++ |||+||++|+|+|+|+|++|
T Consensus 77 ~~e~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EEEEcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99986 89999999999999999875
No 176
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=9.8e-17 Score=147.40 Aligned_cols=158 Identities=18% Similarity=0.132 Sum_probs=102.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|+.|+|||||++++.+.... +.. ....+.+. .....++.....+.||||||+++|..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~------------~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI------------DEY--DPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSA 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC------------cCc--CCchhhEE-EEEEEECCEEEEEEEEeCCCCccchh
Confidence 4589999999999999999999853110 000 00001111 11222333345678999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.....+..+|++++|+|+++....+ ..+.+..+.. .++| +++|.||+|+.+...... .+..++.+.++
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~~---~~~~~~~~~~~--- 141 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVST---GEGQELAKSFG--- 141 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCH---HHHHHHHHHhC---
Confidence 8888889999999999998754422 2222222222 2567 899999999865321111 12233333332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.|++.+||++|. |+.+++++|.+.+
T Consensus 142 --~~~~e~Sak~~~------------------gi~~~~~~l~~~l 166 (189)
T PTZ00369 142 --IPFLETSAKQRV------------------NVDEAFYELVREI 166 (189)
T ss_pred --CEEEEeeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 7888888876654
No 177
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=2.8e-16 Score=140.00 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=98.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|..|+|||||+++|++.... . .....|.+. ....+ .....+.+|||||+.+|...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~------------~---~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV------------T---TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc------------c---ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHH
Confidence 4899999999999999999854110 0 001112221 11222 1346799999999999988888
Q ss_pred hhcccCCeEEEeecCCCCCh-HHHHHHHH-HHH---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC-CCC
Q 011581 167 TGAAQMDGAILVVSGADGPM-PQTKEHIL-LAK---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP-GDD 240 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~-~~t~e~l~-~~~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~-~~~ 240 (482)
..+..+|++|+|+|+.+... ......+. .+. ..+.| +++|+||+|+..... .+ ++...+....+. ...
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 136 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCSDRD 136 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCCCCc
Confidence 88899999999999987542 22222222 222 14677 899999999864211 11 222222111111 134
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++++++||++|. |+.++++.|.+
T Consensus 137 ~~~~~~Sa~~~~------------------gv~~~~~~i~~ 159 (160)
T cd04156 137 WYVQPCSAVTGE------------------GLAEAFRKLAS 159 (160)
T ss_pred EEEEecccccCC------------------ChHHHHHHHhc
Confidence 689999999998 89999998854
No 178
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.70 E-value=2e-16 Score=141.64 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=100.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~ 163 (482)
.+|+++|..|+|||||+++++.... .+. .... +.+.....+..+ ...+.||||||+.+|..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~------------~~~----~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF------------VEK----YDPT-IEDSYRKQVEVDGQQCMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC------------Ccc----cCCc-chheEEEEEEECCEEEEEEEEECCCcccchh
Confidence 5899999999999999999974210 000 0011 111111223333 34567999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.....++.+|++++|+|.++....+. .+.+..+. ..++| +++|.||+|+........ .+..++.+.++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 137 (164)
T cd04175 65 MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGK---EQGQNLARQWG--- 137 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEcH---HHHHHHHHHhC---
Confidence 88888999999999999876543322 22222222 23577 899999999975321111 12233333332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++++.+.+
T Consensus 138 --~~~~~~Sa~~~~------------------~v~~~~~~l~~~l 162 (164)
T cd04175 138 --CAFLETSAKAKI------------------NVNEIFYDLVRQI 162 (164)
T ss_pred --CEEEEeeCCCCC------------------CHHHHHHHHHHHh
Confidence 689999999998 8999999887643
No 179
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.70 E-value=2e-16 Score=142.29 Aligned_cols=159 Identities=23% Similarity=0.228 Sum_probs=101.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++|..++|||||+++|.+.. .. ....|+......++.++..+.+||+||+.+|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~-----------------~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PK-----------------KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cc-----------------cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 48999999999999999997430 00 001122222234555788899999999999988888
Q ss_pred hhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHH-HHHHHHhhcCCCCCC
Q 011581 167 TGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVEL-EVRELLSSYEFPGDD 240 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~-~i~~~l~~~~~~~~~ 240 (482)
.++..+|++|+|+|+++... ...+..+..+.. .++| +++|+||+|+.+.....+.+.. .+.++.++.+ ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~---~~ 137 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLGADVIEYLSLEKLVNENK---SL 137 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCHHHHHHhcCcccccCCCC---ce
Confidence 89999999999999987532 223334433332 3667 8999999999764322111110 1112211111 24
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchh-hhhHHHHHHHhhh
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQW-VDKIYELMDSVDS 281 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w-~~gi~~Ll~~l~~ 281 (482)
++++++||++|.. .| .+|+.+-+++|..
T Consensus 138 ~~~~~~Sa~~g~~-------------~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIEPCSAIEGLG-------------KKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEEeEceeCCC-------------CccccCHHHHHHHHhc
Confidence 6789999999820 01 0178888888753
No 180
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-16 Score=139.72 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=115.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh--hhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE--ERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~--e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
...+|+++|..++|||||+-++... .+.+ |..-|...-+..........++.||||+|+++|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~----------------~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy 67 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKD----------------QFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERY 67 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhC----------------ccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccc
Confidence 4679999999999999999998642 2222 222232222333333334567889999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHcCCCcEEE--EEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVGVPNMVV--FLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~~ip~iiv--viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
....-.+++.+++||+|.|.++... .+.+..+..+....-|.+++ |.||+|+.+..+.. . ++...+.+..+
T Consensus 68 ~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~--~-~ea~~yAe~~g--- 141 (200)
T KOG0092|consen 68 HSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVE--F-EEAQAYAESQG--- 141 (200)
T ss_pred cccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccccc--H-HHHHHHHHhcC---
Confidence 8888889999999999999998554 44455556666554455554 88999998732221 1 25556666544
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
.+++.+||++|. ++.+++..|.+.+|..
T Consensus 142 --ll~~ETSAKTg~------------------Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 142 --LLFFETSAKTGE------------------NVNEIFQAIAEKLPCS 169 (200)
T ss_pred --CEEEEEeccccc------------------CHHHHHHHHHHhccCc
Confidence 689999999999 7899999999988754
No 181
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.70 E-value=2.6e-16 Score=147.64 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=104.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---CCeEEEEEeCCCchhhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET---ENRHYAHVDCPGHADYV 162 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtPG~~~~~ 162 (482)
++|+++|..|+|||||+++|++.. +..+....++.+.....+.. ....+.||||||++.|.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~----------------~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG----------------FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC----------------CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 479999999999999999997531 11112223333333333333 24678899999999988
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc------CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV------GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~------~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
......++.+|++|+|+|+++....+.. +.+..+... +.| +++|.||+|+........ ++..++.+.++
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p-iilVgNK~DL~~~~~v~~---~~~~~~~~~~~ 140 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL-VVLVGNKTDLEHNRTVKD---DKHARFAQANG 140 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce-EEEEEECcccccccccCH---HHHHHHHHHcC
Confidence 8888888999999999999875433322 222333322 234 889999999975322111 13344444433
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.|.+.+
T Consensus 141 -----~~~~~iSAktg~------------------gv~~lf~~l~~~l 165 (215)
T cd04109 141 -----MESCLVSAKTGD------------------RVNLLFQQLAAEL 165 (215)
T ss_pred -----CEEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 578999999998 8899999888754
No 182
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.70 E-value=1.7e-16 Score=143.45 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=102.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|..|+|||||+.++.... +..+....+.... ....+......+.||||||..+|...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS----------------FPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC----------------CCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 689999999999999999997531 0101011111001 11222223356789999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
+...+..+|++|+|+|.++....+.... +..+.. .++| +++|.||+|+.+...... ++..++.+..
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v~~---~~~~~~a~~~----- 137 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQVTT---EEGRNLAREF----- 137 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCccCH---HHHHHHHHHh-----
Confidence 8888899999999999998665444332 222222 3577 899999999865322111 1333444443
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+++++++||++|. |++++++.|...+
T Consensus 138 ~~~~~e~Sa~~~~------------------~v~~~f~~l~~~~ 163 (172)
T cd04141 138 NCPFFETSAALRH------------------YIDDAFHGLVREI 163 (172)
T ss_pred CCEEEEEecCCCC------------------CHHHHHHHHHHHH
Confidence 3689999999998 8888888887644
No 183
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.70 E-value=3.5e-16 Score=139.25 Aligned_cols=154 Identities=23% Similarity=0.136 Sum_probs=101.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeee--eEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT--VEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
.||+++|..|+|||||+++|++.... ......++..... ..+......+.+|||||+..|..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN----------------EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC----------------CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 48999999999999999999853110 0011112122212 22222234688999999999887
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....+..+|++++|+|.+++...+.... +..+.. .++| +++++||+|+.......+ +++.++.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~~---~~~~~~~~~~~---- 136 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVSK---SEAEEYAKSVG---- 136 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCH---HHHHHHHHHcC----
Confidence 77777889999999999988654333322 222222 2567 889999999975322111 23344444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++|++++. |+.++++++.+.
T Consensus 137 -~~~~~~s~~~~~------------------gi~~~~~~l~~~ 160 (162)
T cd04123 137 -AKHFETSAKTGK------------------GIEELFLSLAKR 160 (162)
T ss_pred -CEEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 578999999998 889999988654
No 184
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=1.3e-16 Score=146.74 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=99.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
+|+++|..|+|||||+++|....- . .+....+. .......++.....+.||||||+++|....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-------~---------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 64 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-------V---------ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR 64 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-------C---------ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 489999999999999999974310 0 00000000 001111222223457899999999999888
Q ss_pred HhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+++.+|++|+|+|.++...... .+.+..+.. .++| +++|.||+|+........ .+..++.+.++
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~~---~~~~~~~~~~~--- 137 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVST---EEGAALARRLG--- 137 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccCH---HHHHHHHHHhC---
Confidence 888999999999999987554332 222233322 2567 889999999965322211 12233344333
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.+.+.+
T Consensus 138 --~~~~e~SAk~~~------------------~v~~l~~~l~~~l 162 (190)
T cd04144 138 --CEFIEASAKTNV------------------NVERAFYTLVRAL 162 (190)
T ss_pred --CEEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999998 7888888877644
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.70 E-value=2.8e-16 Score=138.56 Aligned_cols=154 Identities=23% Similarity=0.255 Sum_probs=106.5
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchhhH------
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHADYV------ 162 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~~~------ 162 (482)
++|++|+|||||+++|++..... .....+.|.......+... ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999998642111 1223344544444444433 6789999999976653
Q ss_pred -HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 163 -KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 163 -~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
..+...+..+|++++|+|+..................+.| +++|+||+|+........... ...... ......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~--~~~~~~---~~~~~~ 139 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE--LRLLIL---LLLLGL 139 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHH--HHHhhc---ccccCC
Confidence 3444567889999999999998877776656666667888 889999999987544332211 011111 112468
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+++++|+.++. |+.++++.+...
T Consensus 140 ~~~~~sa~~~~------------------~v~~l~~~l~~~ 162 (163)
T cd00880 140 PVIAVSALTGE------------------GIDELREALIEA 162 (163)
T ss_pred ceEEEeeeccC------------------CHHHHHHHHHhh
Confidence 99999999987 888999888654
No 186
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=3.2e-16 Score=143.34 Aligned_cols=156 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+...+|+++|..|+|||||+++|.+... . .... |.......+..++..+.++||||+.++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~-------~--------~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRL-------A--------QHQP----TQHPTSEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCC-------c--------ccCC----ccccceEEEEECCEEEEEEECCCCHHHH
Confidence 4458999999999999999999975310 0 0000 1111122334467889999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC-
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF- 236 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~- 236 (482)
..+...+..+|++++|+|+++... ....+.+..+. ..+.| +++++||+|+..... . +++.+.+.-...
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~-~----~~i~~~l~l~~~~ 149 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAAS-E----DELRYALGLTNTT 149 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCCC-H----HHHHHHcCCCccc
Confidence 888888899999999999987432 22333333222 24677 899999999864211 1 122322221110
Q ss_pred ------CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 237 ------PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 237 ------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
......++++||++|. |+.+++++|.+
T Consensus 150 ~~~~~~~~~~~~i~~~Sa~~~~------------------g~~~~~~wl~~ 182 (184)
T smart00178 150 GSKGKVGVRPLEVFMCSVVRRM------------------GYGEGFKWLSQ 182 (184)
T ss_pred ccccccCCceeEEEEeecccCC------------------ChHHHHHHHHh
Confidence 1124568999999998 89999999865
No 187
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.70 E-value=1.6e-16 Score=143.00 Aligned_cols=157 Identities=19% Similarity=0.166 Sum_probs=101.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
++|+++|..|+|||||+++|++...... ...... .......+......+.+|||||+.+|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE----------------YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----------------CCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 4899999999999999999986421000 000000 01111222233456889999999988766
Q ss_pred HHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHH--------HHHHHHHHHh
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQL--------VELEVRELLS 232 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~--------i~~~i~~~l~ 232 (482)
....+..+|++++|+|+++....+. .+.+..+... ++| +++|+||+|+.+....... ...+..++..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 6666788999999999987443222 2233333332 477 8999999999864433210 1223444555
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.+++ .+++++|+++|. |+.++++.|.+
T Consensus 144 ~~~~----~~~~~~Sa~~~~------------------gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGA----IGYMECSALTQE------------------GVKEVFEEAIR 170 (171)
T ss_pred HhCC----eEEEEeecCCCC------------------CHHHHHHHHhh
Confidence 4442 489999999998 89999988764
No 188
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.70 E-value=3.6e-16 Score=141.82 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=101.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
.+|+++|..|+|||||+.++.... +..+....+..+.. ..+..++ ..+.||||||+++|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~----------------f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK----------------FPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhh
Confidence 689999999999999999997421 11111111111111 1222333 5678999999999987
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH-H-HHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHH---------HHHHHH
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK-E-HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVE---------LEVREL 230 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~-e-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~---------~~i~~~ 230 (482)
.....++.+|++|+|+|.++....+.. + .+..+.. .++| +|+|.||+|+.+.++..+.+. ++..++
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~ 143 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKL 143 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHH
Confidence 777788899999999999886544333 2 2233332 2567 899999999876433222111 122333
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.+..+ ..+++++||++|. |+.++++.+..
T Consensus 144 a~~~~----~~~~~e~SA~tg~------------------~v~~~f~~~~~ 172 (175)
T cd01874 144 ARDLK----AVKYVECSALTQK------------------GLKNVFDEAIL 172 (175)
T ss_pred HHHhC----CcEEEEecCCCCC------------------CHHHHHHHHHH
Confidence 33332 3689999999998 88899888765
No 189
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=3.1e-16 Score=143.16 Aligned_cols=157 Identities=24% Similarity=0.218 Sum_probs=102.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
...+|+++|+.++|||||++++... . +. . . .. |+......++..+..+.+|||||+.+|..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~-----~--~~-----~---~--~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG-----E--VV-----T---T--IP--TIGFNVETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-----C--cc-----c---c--CC--ccccceEEEEECCEEEEEEECCCCHhHHH
Confidence 3579999999999999999999532 0 00 0 0 11 11111223445678899999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHH-HH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGP-MPQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~-~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...++.+|++|+|+|+++.. .....+.+... .. ...| +++|.||.|+.+.... + ++.+.+....+..
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~l~~~~~~~ 150 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMST-T----EVTEKLGLHSVRQ 150 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCCH-H----HHHHHhCCCcccC
Confidence 8888899999999999998632 12223333222 21 2456 8999999998652111 1 2222222212222
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++++++||++|. |+.+++++|.+.+
T Consensus 151 ~~~~~~~~Sa~tg~------------------gv~e~~~~l~~~i 177 (182)
T PTZ00133 151 RNWYIQGCCATTAQ------------------GLYEGLDWLSANI 177 (182)
T ss_pred CcEEEEeeeCCCCC------------------CHHHHHHHHHHHH
Confidence 34567799999998 8999999987643
No 190
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=9.5e-16 Score=133.95 Aligned_cols=155 Identities=23% Similarity=0.201 Sum_probs=113.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~~ 161 (482)
....+|++.|..|+||||++.++.....-...... ........|..|+...+..++..+ ..+.|+|||||++|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~------~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADA------SSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccc------cccccccccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 44578999999999999999999865321000000 000001134467777777666655 88999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcC-CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG-VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~-ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
...+.-..+.++++|++||++.+.....++.+..+.... +| ++|++||.|+.+..- . ++++++++... ..
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~p-p----e~i~e~l~~~~---~~ 152 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALP-P----EKIREALKLEL---LS 152 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCC-H----HHHHHHHHhcc---CC
Confidence 999999999999999999999988877777778888777 77 899999999987211 0 14445554332 35
Q ss_pred ccEEEcchhhhH
Q 011581 241 VPIISGSALLAL 252 (482)
Q Consensus 241 ~~~i~~Sa~~g~ 252 (482)
+|+|+++|.+++
T Consensus 153 ~~vi~~~a~e~~ 164 (187)
T COG2229 153 VPVIEIDATEGE 164 (187)
T ss_pred Cceeeeecccch
Confidence 899999999887
No 191
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=3.7e-16 Score=154.85 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=102.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHAD--- 160 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~--- 160 (482)
...|+++|.+|+|||||+++|+......+. ....|.......++..+ ..+.|+||||+.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~----------------y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGAS 220 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccC----------------CCCCccCCEEEEEEeCCceEEEEEeCCCcccCCc
Confidence 457999999999999999999864222221 12234444444455555 8899999999742
Q ss_pred ----hHHHHHhhcccCCeEEEeecCCCC----ChHHHHHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHH
Q 011581 161 ----YVKNMITGAAQMDGAILVVSGADG----PMPQTKEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEV 227 (482)
Q Consensus 161 ----~~~~~~~~~~~~D~~ilVvda~~g----~~~~t~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i 227 (482)
....+++.+..+|++++|+|+++. ...+.......+.. .+.| +++|+||+|+.+..+. +. ..
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~~~~-~~---~~ 295 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDEEEL-AE---LL 295 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCChHHH-HH---HH
Confidence 344556667789999999999864 11222222222322 2566 8899999999875332 22 22
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+.+.+.++ .+++++||+++. |+++|++.|.+.+
T Consensus 296 ~~l~~~~~-----~~vi~iSAktg~------------------GI~eL~~~I~~~l 328 (329)
T TIGR02729 296 KELKKALG-----KPVFPISALTGE------------------GLDELLYALAELL 328 (329)
T ss_pred HHHHHHcC-----CcEEEEEccCCc------------------CHHHHHHHHHHHh
Confidence 22222222 579999999998 8999999987654
No 192
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=3.6e-16 Score=138.23 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=101.2
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHh
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMIT 167 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 167 (482)
|+++|+.|+|||||+++|.+... ..+...++..+ ...+...+..+.+||+||+.+|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~----------------~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF----------------SEDTIPTVGFN--MRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC----------------CcCccCCCCcc--eEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 79999999999999999975311 01111112222 2223445678999999999999988888
Q ss_pred hcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 168 GAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 168 ~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
.+..+|++++|+|+++... .+..+.+..+.. .++| +++|+||+|+.+..... ++.+.+.........++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSVD-----ELIEQMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcCHH-----HHHHHhCcccccCCceE
Confidence 8999999999999987432 333333333322 3677 88999999987642211 11111111111123578
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++++|+++|. |+.+++++|.+
T Consensus 138 ~~~~Sa~~~~------------------gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKT------------------NIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCC------------------ChHHHHHHHhh
Confidence 9999999998 89999998864
No 193
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=2.6e-16 Score=140.73 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=99.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCc-eeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|.+|+|||||+++++.... ..+....+ ........++.....+.||||||+++|...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF----------------IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccch
Confidence 5899999999999999999975311 00000000 011112222222345779999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
....+..+|++++|+|.++...-+ ..+.+..+.. .++| +++|.||+|+........ .+...+.+.++
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVSS---AEGRALAEEWG---- 137 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccCH---HHHHHHHHHhC----
Confidence 888889999999999998754322 2333333332 3677 889999999865222111 12223333322
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.+.+.+
T Consensus 138 -~~~~~~Sa~~~~------------------~v~~l~~~l~~~l 162 (163)
T cd04176 138 -CPFMETSAKSKT------------------MVNELFAEIVRQM 162 (163)
T ss_pred -CEEEEecCCCCC------------------CHHHHHHHHHHhc
Confidence 589999999998 8899998887643
No 194
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.69 E-value=4.6e-16 Score=142.56 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=106.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~ 161 (482)
..++|+++|..++|||||+.++... .+..+....++.+.....+..+ ...+.||||||+++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~----------------~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 68 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG----------------STESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF 68 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC----------------CCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 4589999999999999999999742 1111112222333222223333 366789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
...+...++.+|++|||+|.++....+. ...+..+.. .++| +|+|.||+|+....... .++.+++.+..+
T Consensus 69 ~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v~---~~~~~~~a~~~~--- 141 (189)
T cd04121 69 CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQVA---TEQAQAYAERNG--- 141 (189)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCCC---HHHHHHHHHHcC---
Confidence 9888888899999999999998554333 333333332 3567 89999999996422211 124555555443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++.+||++|. |++++++.|.+.+
T Consensus 142 --~~~~e~SAk~g~------------------~V~~~F~~l~~~i 166 (189)
T cd04121 142 --MTFFEVSPLCNF------------------NITESFTELARIV 166 (189)
T ss_pred --CEEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 679999999998 7788888776533
No 195
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.69 E-value=2.1e-15 Score=142.14 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=123.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
.+...|+++|++|+|||||++.|++.... .......|. +. .+...+..++++||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~--------------~~~~~~~g~-i~----i~~~~~~~i~~vDtPg~~--- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTK--------------QNISDIKGP-IT----VVTGKKRRLTFIECPNDI--- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhccc--------------Ccccccccc-EE----EEecCCceEEEEeCCchH---
Confidence 45678999999999999999999864211 000112231 11 122367889999999964
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
..++..+..+|++++|+|+..+...++.+.+..+...++|.+++|+||+|+.+..+..+.+.+++++.+...-+ ...+
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~--~~~k 172 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY--QGAK 172 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC--CCCc
Confidence 56666778999999999999999999999999998889996666999999986444444455566663332112 2469
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEee
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSI 304 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v 304 (482)
++++||++.. ..+|.++ ..++..|+..-+..-+..+....|.++.++.+
T Consensus 173 i~~iSa~~~~------------~~~~~e~-~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 173 LFYLSGIVHG------------RYPKTEI-HNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred EEEEeeccCC------------CCCHHHH-HHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 9999998753 1233333 56666666544433334444445555655543
No 196
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.69 E-value=2.7e-16 Score=144.88 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=101.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|++++|||||+++|++.....+ +.....|.+.......+......+.+|||||+.+|....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG-------------PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc-------------CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 4799999999999999999985311000 000111111212222222223456799999999887777
Q ss_pred HhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH-HHHHHHHHhhcCCCCCCc
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV-ELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i-~~~i~~~l~~~~~~~~~~ 241 (482)
...+..+|++++|+|.++....+. ...+..+... ++| +++|.||+|+....+....+ ..++.++...++ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----A 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC-----C
Confidence 777789999999999987543322 2333334333 577 89999999986532111111 123444444432 6
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+++++||++|. |+.+|++.|.+.+
T Consensus 142 ~~~~~Sa~~~~------------------gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQ------------------NVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 78999999998 8888888887644
No 197
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.69 E-value=3.2e-16 Score=141.72 Aligned_cols=157 Identities=18% Similarity=0.115 Sum_probs=100.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
++|+++|+.++|||||+++|.+..- ..+....+. .......++.....+.+|||||+.+|...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF----------------PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 4799999999999999999975310 000000000 00111222222345789999999998877
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHH--HHHHHH--HcCCCcEEEEEecCCCCChHHHHHHH---------HHHHHHHH
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKE--HILLAK--QVGVPNMVVFLNKQDQVDDEELLQLV---------ELEVRELL 231 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e--~l~~~~--~~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~~~l 231 (482)
....+..+|++++|+|..+....+... .+..+. ..++| ++++.||+|+.+.......+ .++...+.
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 777788999999999998764433321 222232 24677 88999999986533221111 12334455
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+.++. .+++.+||++|. |+.++++.+..
T Consensus 144 ~~~~~----~~~~e~Sa~~~~------------------gi~~~f~~~~~ 171 (174)
T cd04135 144 KEIGA----HCYVECSALTQK------------------GLKTVFDEAIL 171 (174)
T ss_pred HHcCC----CEEEEecCCcCC------------------CHHHHHHHHHH
Confidence 55443 479999999998 89999988765
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=158.49 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=119.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh--
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY-- 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~-- 161 (482)
.-++++++|.||+|||||+|+|++. |+.-.....|+|.+.-...+..++..+.++||+|.++-
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~---------------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d 280 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGR---------------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD 280 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcC---------------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc
Confidence 4579999999999999999999976 33444457799999999999999999999999996433
Q ss_pred ------HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 162 ------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 162 ------~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
.......+..||.+++|+|++.....+....+. +...+.| +++|+||+|+....... .+ +
T Consensus 281 ~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~~-----~~-----~-- 346 (454)
T COG0486 281 VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIELE-----SE-----K-- 346 (454)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhcccccccc-----hh-----h--
Confidence 344566778999999999999987777777766 3444566 88999999998743211 11 1
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
. ....+++.+|+++|. |++.|.++|.+++.
T Consensus 347 ~-~~~~~~i~iSa~t~~------------------Gl~~L~~~i~~~~~ 376 (454)
T COG0486 347 L-ANGDAIISISAKTGE------------------GLDALREAIKQLFG 376 (454)
T ss_pred c-cCCCceEEEEecCcc------------------CHHHHHHHHHHHHh
Confidence 1 124579999999998 88888888877654
No 199
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.69 E-value=2e-16 Score=141.22 Aligned_cols=154 Identities=20% Similarity=0.176 Sum_probs=100.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee--eeeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
.+|+++|.+|+|||||+++|+....... .. +.+.+. ....++.....+.+|||||+.+|..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVED----------------YE-PTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccc----------------cC-CcchhhEEEEEEECCEEEEEEEEECCChhhhhH
Confidence 4899999999999999999985311000 00 000010 1112233345688999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChH-HHHHHHHHH-H---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMP-QTKEHILLA-K---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~-~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.....++.+|++++|+|..+.... ...+.+... . ..++| +++|+||+|+.+...... .+...+.+.++
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~~---~~~~~~~~~~~--- 136 (164)
T cd04139 64 IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVSS---EEAANLARQWG--- 136 (164)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccCH---HHHHHHHHHhC---
Confidence 888889999999999998864321 112222222 2 24678 899999999976211111 12233333333
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.|++++||++|. |+.++++.+.+.+
T Consensus 137 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 161 (164)
T cd04139 137 --VPYVETSAKTRQ------------------NVEKAFYDLVREI 161 (164)
T ss_pred --CeEEEeeCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8999999887643
No 200
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=2.6e-16 Score=145.70 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=99.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~~ 164 (482)
+|+++|+.|+|||||+++|++.... .+ ....+.+.....+...+ ..+.||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~----------------~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE----------------PK-YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC----------------cc-CCCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 5899999999999999999753110 00 00011111222333334 56889999999999877
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHH-HHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEH-ILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
...++..+|++|+|+|+++....+.... +..+. ..++| +++|+||+|+...+.... . .+..+... .. .
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~-~-~~~~~~~~-~~---~ 136 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP-A-KDALSTVE-LD---W 136 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccccc-H-HHHHHHHH-hh---c
Confidence 7778889999999999987544332222 12222 24677 889999999975322111 0 11111111 11 1
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
..+++++||++|. |+.++++++.+.+.
T Consensus 137 ~~~~~~~Sa~~g~------------------gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDNE------------------NVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCCC------------------CHHHHHHHHHHHhh
Confidence 3678999999998 89999999887654
No 201
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.69 E-value=5.9e-16 Score=139.70 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=102.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~ 164 (482)
+|+++|+.++|||||++++++.. +..+....+..+.....+... ...+.||||||+++|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV----------------FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----------------CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 69999999999999999998531 111111222222222233333 356889999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHcC---CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQVG---VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~~---ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
....++.+|++++|+|+++..... ..+.+..+.... .+.+++|.||+|+.+..+. ...+.+...+.++++
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~-~~~~~~~~~~~~~~~----- 139 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY-ALMEQDAIKLAAEMQ----- 139 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccc-cccHHHHHHHHHHcC-----
Confidence 888899999999999998743322 233333332221 1237899999998653221 111223344444433
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++.+||++|. |+.++++.|.+..
T Consensus 140 ~~~~e~Sa~~g~------------------~v~~lf~~l~~~~ 164 (170)
T cd04108 140 AEYWSVSALSGE------------------NVREFFFRVAALT 164 (170)
T ss_pred CeEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 578999999998 8888888887643
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.68 E-value=3.3e-16 Score=140.96 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=100.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
.+|+++|.+|+|||||+++|.+... . +.. +...+.. ......+......+.+|||||+.+|....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-------~-----~~~--~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-------I-----ESY--DPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-------C-----ccc--CCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhh
Confidence 5899999999999999999974311 0 000 0000000 11112222233567899999999999888
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHHH-HHHH----HHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKEH-ILLA----KQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~----~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
...+..+|++++|+|.++....+.... ...+ ...+.| ++++.||+|+........ ++...+.+.++ .
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~~---~~~~~~~~~~~----~ 138 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVSR---EDGVSLSQQWG----N 138 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccCH---HHHHHHHHHcC----C
Confidence 888899999999999987543222221 1222 223678 888999999865322111 12333344433 3
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+|++++||++|. |+.++++++...
T Consensus 139 ~~~~~~SA~~~~------------------~i~~~f~~i~~~ 162 (168)
T cd04177 139 VPFYETSARKRT------------------NVDEVFIDLVRQ 162 (168)
T ss_pred ceEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 789999999998 788888888754
No 203
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.68 E-value=3.1e-16 Score=140.95 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=101.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec--CCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDtPG~~~~~~ 163 (482)
.+|+++|..|+|||||+++++...- ..+....+..+.....+.. ....+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF----------------EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc
Confidence 4799999999999999999974310 0011111122222222322 345678999999998876
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
.....+..+|++|+|+|.++....+..+.+ ..+... ++| +++|.||+|+.... ... +..++.+. ..
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-~~~----~~~~~~~~-----~~ 133 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-VKA----KQITFHRK-----KN 133 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhccccc-CCH----HHHHHHHH-----cC
Confidence 666677899999999999986554443322 333222 577 89999999997422 111 11222222 24
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.|.+.+
T Consensus 134 ~~~~e~Sa~~~~------------------~v~~~f~~l~~~~ 158 (166)
T cd00877 134 LQYYEISAKSNY------------------NFEKPFLWLARKL 158 (166)
T ss_pred CEEEEEeCCCCC------------------ChHHHHHHHHHHH
Confidence 789999999998 8899999988654
No 204
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=4.5e-16 Score=140.70 Aligned_cols=150 Identities=23% Similarity=0.206 Sum_probs=97.6
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchhh-------
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHADY------- 161 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~~------- 161 (482)
++|+.|+|||||+++|++... ......+.|++.....+..+ +..+.||||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP----------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc----------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 589999999999999986421 11122344555544455566 788999999997432
Q ss_pred HHHHHhhcccCCeEEEeecCCCCC------h-HHHHHHHHHHH----------HcCCCcEEEEEecCCCCChHHHHHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGP------M-PQTKEHILLAK----------QVGVPNMVVFLNKQDQVDDEELLQLVE 224 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~------~-~~t~e~l~~~~----------~~~ip~iivviNK~D~~~~~~~~~~i~ 224 (482)
...+...+..+|++++|+|+.+.. . .....+...+. ..+.| +++|+||+|+.......+..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHHHH-
Confidence 234456677899999999998763 2 22222222222 13677 88999999998754332211
Q ss_pred HHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 225 LEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
...... ....+++++||.++. |+.++++.+...
T Consensus 143 --~~~~~~-----~~~~~~~~~Sa~~~~------------------gl~~l~~~l~~~ 175 (176)
T cd01881 143 --VRELAL-----EEGAEVVPISAKTEE------------------GLDELIRAIYEL 175 (176)
T ss_pred --HHHHhc-----CCCCCEEEEehhhhc------------------CHHHHHHHHHhh
Confidence 111111 124679999999998 889999988653
No 205
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.68 E-value=2.5e-16 Score=124.21 Aligned_cols=83 Identities=42% Similarity=0.727 Sum_probs=78.4
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccC
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRG 373 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 373 (482)
|+|+|+++|++++.|+++.|+|++|++++||++.++|.+. ..+|++|+.++.++++|.|||.|++.|++++..++++|
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~--~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G 78 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGE--ETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERG 78 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCc--eEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCc
Confidence 6899999999999999999999999999999999999764 78999999999999999999999999999888899999
Q ss_pred eEEeC
Q 011581 374 MVLAK 378 (482)
Q Consensus 374 ~vl~~ 378 (482)
|+|+.
T Consensus 79 ~vl~~ 83 (83)
T cd03696 79 DVLSS 83 (83)
T ss_pred cEEcC
Confidence 99973
No 206
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=5.9e-16 Score=144.82 Aligned_cols=169 Identities=21% Similarity=0.265 Sum_probs=113.0
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC---
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG--- 157 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG--- 157 (482)
+....++|+++|.+|+|||||.|.+++... .+..++...|.......+..+..+++|+||||
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv---------------~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKV---------------SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVS 132 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcc---------------ccccccccceeeeeeEEEecCceEEEEecCCcccc
Confidence 345678999999999999999999987532 23334555666666777888899999999999
Q ss_pred ---ch------hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc-CCCcEEEEEecCCCCChHHHHHHHHH--
Q 011581 158 ---HA------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVPNMVVFLNKQDQVDDEELLQLVEL-- 225 (482)
Q Consensus 158 ---~~------~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-~ip~iivviNK~D~~~~~~~~~~i~~-- 225 (482)
|. .+..+...++..||++++|+|+++.-....-..+..+..+ .+| -|+|+||+|........-.++.
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ip-s~lvmnkid~~k~k~~Ll~l~~~L 211 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIP-SILVMNKIDKLKQKRLLLNLKDLL 211 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCC-ceeeccchhcchhhhHHhhhHHhc
Confidence 22 2344566778899999999999963333333344445444 677 6789999998875432221111
Q ss_pred ----------HHHHHHhhcC----------CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 226 ----------EVRELLSSYE----------FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 226 ----------~i~~~l~~~~----------~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++-+.... ++ ..-.+|++||++|. |+.+|-++|....+
T Consensus 212 t~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws-hfe~vF~vSaL~G~------------------GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 212 TNGELAKLKLEVQEKFTDVPSDEKWRTICGWS-HFERVFMVSALYGE------------------GIKDLKQYLMSQAP 271 (379)
T ss_pred cccccchhhhhHHHHhccCCcccccccccCcc-cceeEEEEeccccc------------------CHHHHHHHHHhcCC
Confidence 1111111110 11 12238999999998 88888888877554
No 207
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.68 E-value=2.3e-16 Score=130.18 Aligned_cols=89 Identities=30% Similarity=0.455 Sum_probs=80.0
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEEEEEEeCceE
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMVVELIMPV 455 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~v~~~~~~p~ 455 (482)
.+++|+|+|+||+++ .||.+||++.+|+++.+++|+|.+|.+..| ++++++++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLNHP-----GQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred cccEEEEEEEEECCC-----CcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCee
Confidence 367899999999975 589999999999999999999999876433 2467899999999999999999
Q ss_pred eeccC------CeEEEeeCCcEEEEEEE
Q 011581 456 ACEQG------MRFAIREGGKTVGAGVI 477 (482)
Q Consensus 456 ~~~~~------~rfilr~~~~tvg~G~v 477 (482)
|++++ |||+|||+|+|+|+|+|
T Consensus 77 ~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99986 89999999999999986
No 208
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.68 E-value=7.5e-16 Score=137.77 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=101.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcC--CceeeeeeeEee-cCCeEEEEEeCCCchhhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERAR--GITINTATVEYE-TENRHYAHVDCPGHADYV 162 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~~-~~~~~i~liDtPG~~~~~ 162 (482)
++|+++|..++|||||+++|... + ..++.+... |.........+. .....+.+|||||+..|.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~----~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSN----G----------AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----C----------CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 47999999999999999999742 0 011111111 112212222232 234678999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
......+..+|++++|+|.++....... ..+..+.. .++| +++|+||+|+.+..+.... +.+.+....
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~---~~~~~~~~~----- 137 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTDA---QAQAFAQAN----- 137 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCHH---HHHHHHHHc-----
Confidence 8888888999999999999875432222 22233332 2567 8899999999653322111 112222222
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..+++++||.+|. |+.++++.|.+.
T Consensus 138 ~~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 162 (164)
T cd04101 138 QLKFFKTSALRGV------------------GYEEPFESLARA 162 (164)
T ss_pred CCeEEEEeCCCCC------------------ChHHHHHHHHHH
Confidence 2679999999998 899999988763
No 209
>PLN03110 Rab GTPase; Provisional
Probab=99.68 E-value=6.1e-16 Score=145.15 Aligned_cols=157 Identities=17% Similarity=0.104 Sum_probs=105.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~ 161 (482)
..++|+++|+.++|||||+++|++.. +..+....+..+.....+..+ ...+.||||||+++|
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~----------------~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE----------------FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC----------------CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 45799999999999999999997531 111112222333333333333 357889999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.......++.+|++|+|+|.++....+..+ .+..+.. .++| +++|.||+|+....+..+ ++.+.+...+
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~---~~~~~l~~~~--- 147 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAE---EDGQALAEKE--- 147 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCH---HHHHHHHHHc---
Confidence 888888889999999999998754433333 2333333 3577 889999999865322211 1222333322
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++++||++|. |+.++++.|...+
T Consensus 148 --~~~~~e~SA~~g~------------------~v~~lf~~l~~~i 173 (216)
T PLN03110 148 --GLSFLETSALEAT------------------NVEKAFQTILLEI 173 (216)
T ss_pred --CCEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 3789999999998 7778877776654
No 210
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=8.9e-16 Score=141.93 Aligned_cols=156 Identities=17% Similarity=0.078 Sum_probs=96.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhH-
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYV- 162 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~- 162 (482)
++|+++|..|+|||||++++++.. +..+...+++.+.....+..++ ..+.||||||+.+|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~----------------f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE----------------FPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC----------------CCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 479999999999999999997531 1111111112121111222233 567899999976541
Q ss_pred -------HHHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHH------HcCCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 163 -------KNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAK------QVGVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 163 -------~~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~------~~~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
......+..+|++|+|+|+++....+.... +..+. ..++| +++|.||+|+........ +++.
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~~---~~~~ 140 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAPR---HVLS 140 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccccccccccH---HHHH
Confidence 113345678999999999998654333222 22222 23577 889999999965321111 1233
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+.++. .+++++++||++|. |+.+|++.+....
T Consensus 141 ~~~~~~----~~~~~~e~Sak~g~------------------~v~~lf~~i~~~~ 173 (198)
T cd04142 141 VLVRKS----WKCGYLECSAKYNW------------------HILLLFKELLISA 173 (198)
T ss_pred HHHHHh----cCCcEEEecCCCCC------------------CHHHHHHHHHHHh
Confidence 333321 24789999999998 7888888887654
No 211
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=7.2e-16 Score=141.64 Aligned_cols=160 Identities=16% Similarity=0.089 Sum_probs=103.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
++|+++|..|+|||||+++|++..- ..+....+.... .....+.....+.||||||+++|...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~----------------~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYF----------------PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC----------------CCccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccc
Confidence 4799999999999999999975310 001111111111 11122223357889999999998776
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHH--HHHHHHH--cCCCcEEEEEecCCCCChHHHHHHH---------HHHHHHHH
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLV---------ELEVRELL 231 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e--~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~~~l 231 (482)
....+..+|++|+|+|.++....+..+ .+..+.. .+.| +++|.||+|+....+..+.+ .++..++.
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 666778999999999998865544332 2333333 2667 89999999997643221110 11233344
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+..+ .++++++||++|. |+.++++.|.+.+.
T Consensus 144 ~~~~----~~~~~e~SAk~~~------------------~v~e~f~~l~~~~~ 174 (189)
T cd04134 144 KRIN----ALRYLECSAKLNR------------------GVNEAFTEAARVAL 174 (189)
T ss_pred HHcC----CCEEEEccCCcCC------------------CHHHHHHHHHHHHh
Confidence 3332 3689999999998 88999988887554
No 212
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.68 E-value=1.4e-15 Score=138.78 Aligned_cols=157 Identities=15% Similarity=0.214 Sum_probs=102.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
++|+++|..++|||||+.+++... +..+....+..+.....+..++ ..+.+|||+|+++|..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~----------------f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE----------------FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC----------------CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 479999999999999999997531 1111112222222222233333 5678999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHhhcCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDD--EELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.....++.+|++++|+|+++....+. .+.+..+... ..| |+|.||+|+... .+..+.+.++..++.+..+
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-- 140 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP--ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-- 140 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE--EEEEEchhccccccchhhhhhHHHHHHHHHHcC--
Confidence 77788899999999999987544333 2333334332 334 578999999631 1111112234455554433
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |++++++.+.+.+
T Consensus 141 ---~~~~e~SAk~g~------------------~v~~lf~~l~~~l 165 (182)
T cd04128 141 ---APLIFCSTSHSI------------------NVQKIFKIVLAKA 165 (182)
T ss_pred ---CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 679999999998 8888888887644
No 213
>PRK11058 GTPase HflX; Provisional
Probab=99.68 E-value=5.5e-16 Score=158.55 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=102.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchhh-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHADY- 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~~- 161 (482)
..++|+++|.+|+|||||+|+|++.... .....+.|++.....+...+ ..+.||||||+.+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~----------------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l 259 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY----------------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee----------------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC
Confidence 4578999999999999999999864211 11223456665555555544 37899999997331
Q ss_pred -------HHHHHhhcccCCeEEEeecCCCCChHHHH----HHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 011581 162 -------VKNMITGAAQMDGAILVVSGADGPMPQTK----EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVREL 230 (482)
Q Consensus 162 -------~~~~~~~~~~~D~~ilVvda~~g~~~~t~----e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~ 230 (482)
+..+...+..+|++|+|+|+++....... +.+..+...++| +++|+||+|+.+.... .+ ..
T Consensus 260 p~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~~--~~----~~- 331 (426)
T PRK11058 260 PHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFEP--RI----DR- 331 (426)
T ss_pred CHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchhH--HH----HH-
Confidence 23345667899999999999986543332 233333334677 8899999999753211 11 10
Q ss_pred HhhcCCCCCCcc-EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 231 LSSYEFPGDDVP-IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 231 l~~~~~~~~~~~-~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...+ .+ ++++||++|. |+++|++.|.+.+.
T Consensus 332 -~~~~-----~~~~v~ISAktG~------------------GIdeL~e~I~~~l~ 362 (426)
T PRK11058 332 -DEEN-----KPIRVWLSAQTGA------------------GIPLLFQALTERLS 362 (426)
T ss_pred -HhcC-----CCceEEEeCCCCC------------------CHHHHHHHHHHHhh
Confidence 0112 23 5889999998 89999999988764
No 214
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.67 E-value=1.8e-15 Score=139.25 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=103.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee---eeEeecCCeEEEEEeCCCchhh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA---TVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~---~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.++|+++|..++|||||+.++.... +..+.. .|+... ...++.....+.||||||+++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~----------------f~~~~~--~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA----------------FPKEYI--PTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC----------------CCcCCC--CceEeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 4799999999999999999997421 111111 122111 1122323356789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHH-HH-HHHHH--cCCCcEEEEEecCCCCChHHHHHHH---------HHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKE-HI-LLAKQ--VGVPNMVVFLNKQDQVDDEELLQLV---------ELEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l-~~~~~--~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~ 228 (482)
.......++.+|++|+|+|.++...-+... .| ..+.. .++| +++|.||.|+.+.....+.+ .++..
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 988777889999999999998755433332 22 22222 3677 89999999996532211111 11333
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++.+..+ ..+++.+||++|. |+.++++.|.+.+
T Consensus 144 ~~a~~~~----~~~~~e~SAk~g~------------------~v~e~f~~l~~~~ 176 (191)
T cd01875 144 ALAKQIH----AVKYLECSALNQD------------------GVKEVFAEAVRAV 176 (191)
T ss_pred HHHHHcC----CcEEEEeCCCCCC------------------CHHHHHHHHHHHH
Confidence 4444433 2589999999998 8888888887754
No 215
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.67 E-value=1.5e-15 Score=137.55 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=102.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+++|+++|..|+|||||+.+++... +..+....+. .......++.....+.||||||+.+|..
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNA----------------FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCC----------------CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh
Confidence 3689999999999999999997421 0111111110 0011122333335678999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH-H-HHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHHHHHH
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK-E-HILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELEVREL 230 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~-e-~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~i~~~ 230 (482)
.....+..+|++|+|+|.++....+.. + ++..+... ++| +++|.||+|+.+.....+.+ .++..++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 777788899999999999885544433 2 33333322 567 89999999996532211111 1233344
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.+.++ .++++++||++|. |+.++++.+.+
T Consensus 144 ~~~~~----~~~~~e~Sa~~~~------------------~i~~~f~~l~~ 172 (174)
T cd01871 144 AKEIG----AVKYLECSALTQK------------------GLKTVFDEAIR 172 (174)
T ss_pred HHHcC----CcEEEEecccccC------------------CHHHHHHHHHH
Confidence 44443 2589999999998 88999988764
No 216
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.67 E-value=5.5e-16 Score=159.41 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|++|+|||||+|+|++... .......|.|.+.....+..++..+.+|||||+.++.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~---------------aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~ 265 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR---------------AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch
Confidence 4568999999999999999999986311 1112345778887777778888999999999985543
Q ss_pred H--------HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 163 K--------NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 163 ~--------~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
. .+...+..+|++++|+|++++...+.. .+..+...+.| +++|+||+|+... +. ..+.+.+
T Consensus 266 ~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~-~~--------~~~~~~~ 334 (442)
T TIGR00450 266 DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN-SL--------EFFVSSK 334 (442)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc-ch--------hhhhhhc
Confidence 2 234567889999999999987765544 44455555777 8899999999753 11 1112222
Q ss_pred CCCCCCccEEEcchhh
Q 011581 235 EFPGDDVPIISGSALL 250 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~ 250 (482)
..+++.+||++
T Consensus 335 -----~~~~~~vSak~ 345 (442)
T TIGR00450 335 -----VLNSSNLSAKQ 345 (442)
T ss_pred -----CCceEEEEEec
Confidence 25788999987
No 217
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=9.9e-16 Score=137.38 Aligned_cols=158 Identities=21% Similarity=0.213 Sum_probs=100.3
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHh
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMIT 167 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 167 (482)
|+++|..|+|||||+++|.+... ..+.. .|+......++..+..+.+|||||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~----------------~~~~~--pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS----------------LESVV--PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC----------------ccccc--ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 78999999999999999974310 00000 1111122345566788999999999999888888
Q ss_pred hcccCCeEEEeecCCCCCh-HHHHHHHHHHH-H-cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC-CCCCccE
Q 011581 168 GAAQMDGAILVVSGADGPM-PQTKEHILLAK-Q-VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF-PGDDVPI 243 (482)
Q Consensus 168 ~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~-~-~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~-~~~~~~~ 243 (482)
.++.+|++|+|+|+++... ...++.+..+. . .++| +++|.||+|+...... + ++.+.+....+ ....+++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~~~~~~~~~ 137 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAARSV-Q----EIHKELELEPIARGRRWIL 137 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCCCH-H----HHHHHhCChhhcCCCceEE
Confidence 8999999999999987543 22333333332 2 3677 8999999998763211 1 22222111111 1235778
Q ss_pred EEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 244 ISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 244 i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+++||++.-+. .-.+|+.++++.|.+
T Consensus 138 ~~~Sa~~~~s~------------~~~~~v~~~~~~~~~ 163 (164)
T cd04162 138 QGTSLDDDGSP------------SRMEAVKDLLSQLIN 163 (164)
T ss_pred EEeeecCCCCh------------hHHHHHHHHHHHHhc
Confidence 99998872210 011289999988764
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=8.1e-16 Score=140.90 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=101.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee-eeEee-cCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA-TVEYE-TENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~-~~~~~i~liDtPG~~~~~~ 163 (482)
++|+++|..|+|||||+++|++... ..+....+..+.. ..... .....+.||||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~----------------~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF----------------PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC----------------CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH
Confidence 4899999999999999999985311 1111111111111 11111 2234688999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHH--HHHHHHH--cCCCcEEEEEecCCCCChHHHHH-HHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQ-LVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e--~l~~~~~--~~ip~iivviNK~D~~~~~~~~~-~i~~~i~~~l~~~~~~~ 238 (482)
.....+..+|++|+|+|.++....+... .+..... .++| +|+|.||+|+........ ....+..++...++.
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 8777889999999999998755443332 2222221 3577 899999999865221000 011244445555442
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.+...+
T Consensus 142 --~~~~e~Sa~~~~------------------~v~~~f~~l~~~~ 166 (187)
T cd04132 142 --FAYLECSAKTME------------------NVEEVFDTAIEEA 166 (187)
T ss_pred --cEEEEccCCCCC------------------CHHHHHHHHHHHH
Confidence 378999999998 7788877776644
No 219
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=9.5e-16 Score=157.69 Aligned_cols=157 Identities=23% Similarity=0.265 Sum_probs=105.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh--
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~-- 160 (482)
+-...|+++|.+|+|||||+|+|++....++ ...+.|+......++..+..++|+||||..+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkIa----------------dypfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKIA----------------DYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCcccc----------------ccCcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 3456799999999999999999986422111 2345577666666777788999999999532
Q ss_pred -----hHHHHHhhcccCCeEEEeecCCCC-----ChHHH---H-HHHHHH----------HHcCCCcEEEEEecCCCCCh
Q 011581 161 -----YVKNMITGAAQMDGAILVVSGADG-----PMPQT---K-EHILLA----------KQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 161 -----~~~~~~~~~~~~D~~ilVvda~~g-----~~~~t---~-e~l~~~----------~~~~ip~iivviNK~D~~~~ 216 (482)
.....++.+..+|++|+|||+++. ...+. . +..... ...+.| +|||+||+|+.+.
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da 299 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDVPDA 299 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccchhh
Confidence 223445567789999999999742 11111 1 111122 123567 7899999999765
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 217 EELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+..+. +.+.++.. .++++++||+++. |+.+|+++|.+.+
T Consensus 300 ~el~e~----l~~~l~~~-----g~~Vf~ISA~tge------------------GLdEL~~~L~ell 339 (500)
T PRK12296 300 RELAEF----VRPELEAR-----GWPVFEVSAASRE------------------GLRELSFALAELV 339 (500)
T ss_pred HHHHHH----HHHHHHHc-----CCeEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 443332 23333333 2689999999998 7888888877655
No 220
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.67 E-value=5.7e-16 Score=124.22 Aligned_cols=88 Identities=73% Similarity=1.206 Sum_probs=80.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEE
Q 011581 385 HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFA 464 (482)
Q Consensus 385 ~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfi 464 (482)
++.|+|++.+|++.++++..+|+.||++++|+|+.++.|+|..+. ++..+++||.+.|+|++.+|+++++++||+
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-----~~~~i~~g~~~~v~l~l~~pv~~~~~~rf~ 77 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-----GTEMVMPGDNVKMTVELIHPIALEKGLRFA 77 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-----cccccCCCCEEEEEEEECCcEEEecCCEEE
Confidence 578999999999865555579999999999999999999999986 457799999999999999999999999999
Q ss_pred EeeCCcEEEEEEE
Q 011581 465 IREGGKTVGAGVI 477 (482)
Q Consensus 465 lr~~~~tvg~G~v 477 (482)
||++++|+|+|+|
T Consensus 78 lR~~~~tig~G~V 90 (90)
T cd03707 78 IREGGRTVGAGVI 90 (90)
T ss_pred EecCCcEEEEEEC
Confidence 9999999999986
No 221
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.67 E-value=1.1e-15 Score=135.80 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=101.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~~~ 164 (482)
+|+++|+.|+|||||+++|++... ... ....+.+.....+... ...+.+||+||+.+|...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEE----------------YDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcC----------------cCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 589999999999999999985420 000 0000111112223333 457889999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChH-HHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
....+..+|++++|+|.++.... .....+..+.. .+.| +++|+||+|+....... .+++..+.+..+
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQVS---KEEGKALAKEWG---- 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccceec---HHHHHHHHHHcC----
Confidence 88888899999999999874432 22222222222 2566 89999999997632211 124445555443
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++|++++. |+.++++.|.+.
T Consensus 136 -~~~~~~S~~~~~------------------~i~~l~~~l~~~ 159 (160)
T cd00876 136 -CPFIETSAKDNI------------------NIDEVFKLLVRE 159 (160)
T ss_pred -CcEEEeccCCCC------------------CHHHHHHHHHhh
Confidence 689999999988 889999988753
No 222
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=7.2e-16 Score=144.09 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=102.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---CCeEEEEEeCCCchhh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET---ENRHYAHVDCPGHADY 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtPG~~~~ 161 (482)
.++|+++|..|+|||||+++|++... ......++..+.....++. ....+.+|||||++.|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~----------------~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRF----------------AEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH
Confidence 47899999999999999999985311 0011112222322222322 2357889999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH-c---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-V---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~-~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......+..+|++|+|+|.++...... .+.+..+.. . ..| ++++.||+|+.+...... ++..++.+.++
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~~~~v~~---~~~~~~~~~~~- 140 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPV-FILVGHKCDLESQRQVTR---EEAEKLAKDLG- 140 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCe-EEEEEEccccccccccCH---HHHHHHHHHhC-
Confidence 8888888899999999999987543222 222222222 1 334 788999999976322211 13334444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++.+||++|. |+.++++.|.+.+
T Consensus 141 ----~~~~e~Sak~g~------------------~v~e~f~~l~~~~ 165 (211)
T cd04111 141 ----MKYIETSARTGD------------------NVEEAFELLTQEI 165 (211)
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 7888888887644
No 223
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.67 E-value=9.5e-16 Score=138.58 Aligned_cols=156 Identities=20% Similarity=0.168 Sum_probs=99.5
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceee-eeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN-TATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
|+++|..|+|||||++++++..- ..+....+... .....+......+.+|||||+++|.....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF----------------PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC----------------CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 58999999999999999975311 00001111111 11112222234578999999999987777
Q ss_pred hhcccCCeEEEeecCCCCChHHHH-H-HHHHHHH--cCCCcEEEEEecCCCCChHHHHHHH---------HHHHHHHHhh
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTK-E-HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLV---------ELEVRELLSS 233 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~-e-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~~~l~~ 233 (482)
..+..+|++|+|+|.++....+.. . .+..+.. .++| +++|.||+|+.......+.+ .++..++.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 778899999999999875333222 1 2233332 2677 89999999997532211111 1233445555
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+. .+++++||++|. |+.++++.+...
T Consensus 144 ~~~----~~~~e~Sa~~~~------------------~v~~lf~~l~~~ 170 (174)
T smart00174 144 IGA----VKYLECSALTQE------------------GVREVFEEAIRA 170 (174)
T ss_pred cCC----cEEEEecCCCCC------------------CHHHHHHHHHHH
Confidence 442 479999999998 889999888764
No 224
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.66 E-value=5.3e-16 Score=139.08 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=95.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCc-eeeeeeeEeecCCeEEEEEeCCCchhh-HHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADY-VKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-Ti~~~~~~~~~~~~~i~liDtPG~~~~-~~~ 164 (482)
+|+++|+.|+|||||+++++...- .+. ..... +.......++.....+.||||||+..+ ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~---------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 64 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGE---------------YDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQ 64 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccc---------------cCCChHHhceEEEEECCEEEEEEEEECCCCcccccch
Confidence 589999999999999999974210 000 00000 111112223333346789999999853 445
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
....++.+|++|+|+|+++....+..+. +..+.. .++| +++|.||+|+........ ++..++.+.++
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~--- 137 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVST---EEGEKLASELG--- 137 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccCH---HHHHHHHHHcC---
Confidence 5667789999999999998654333222 222322 2677 889999999854321111 12333333333
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+++++||++|.+ |+.++++.+.+.
T Consensus 138 --~~~~e~Sa~~~~~-----------------~v~~~f~~l~~~ 162 (165)
T cd04146 138 --CLFFEVSAAEDYD-----------------GVHSVFHELCRE 162 (165)
T ss_pred --CEEEEeCCCCCch-----------------hHHHHHHHHHHH
Confidence 5799999998831 788888888754
No 225
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=9.7e-16 Score=155.78 Aligned_cols=152 Identities=21% Similarity=0.274 Sum_probs=101.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHAD---- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~---- 160 (482)
..|+++|.+|+|||||+++|++....++. ..+.|+......+... +..+.|+|+||..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~----------------ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~ 222 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIAN----------------YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE 222 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCcccc----------------CCcceeceEEEEEEEeCCceEEEEECCCCcccccc
Confidence 47999999999999999999864322221 2234665555555555 67899999999632
Q ss_pred ---hHHHHHhhcccCCeEEEeecCCCC----ChHHHHHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 161 ---YVKNMITGAAQMDGAILVVSGADG----PMPQTKEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 161 ---~~~~~~~~~~~~D~~ilVvda~~g----~~~~t~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
.....++.+..+|++|+|+|+++. ...........+.. .+.| ++||+||+|+....+ .+.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~e-------~l~ 294 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAEE-------NLE 294 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCHH-------HHH
Confidence 234455667789999999999753 22222223333333 3567 789999999854322 222
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++.+.++ .+++++||+++. |+.+|++.|.+.+.
T Consensus 295 ~l~~~l~-----~~i~~iSA~tge------------------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 295 EFKEKLG-----PKVFPISALTGQ------------------GLDELLYAVAELLE 327 (424)
T ss_pred HHHHHhC-----CcEEEEeCCCCC------------------CHHHHHHHHHHHHH
Confidence 2333322 578999999998 88899888877653
No 226
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=9.4e-16 Score=139.51 Aligned_cols=155 Identities=21% Similarity=0.188 Sum_probs=99.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCcee-eeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITI-NTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
++|+++|++|+|||||+++|++...... ...++.. ......+...+..+.+|||||+.+|...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVES----------------YYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSIL 65 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccc----------------cCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHH
Confidence 6899999999999999999985311000 0000000 0111122222356789999999999887
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHH-HHHH-HH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEH-ILLA-KQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~-~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
....+..+|++++|+|.++....+.... +..+ .. .+.| +++|+||+|+...+.... .+...+.+.++
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (180)
T cd04137 66 PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVST---EEGKELAESWG---- 137 (180)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCH---HHHHHHHHHcC----
Confidence 7788889999999999998654333222 2222 22 3567 889999999875322211 12333333332
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||+++. |+.++++++...+
T Consensus 138 -~~~~~~Sa~~~~------------------gv~~l~~~l~~~~ 162 (180)
T cd04137 138 -AAFLESSARENE------------------NVEEAFELLIEEI 162 (180)
T ss_pred -CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 578999999987 7777777776543
No 227
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.5e-15 Score=133.88 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=109.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe--EEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPG~~ 159 (482)
....++|.++|..|+|||.|+-++.. +.+.++....+-++.....++.+++ ++.+|||+|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE 69 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE 69 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccH
Confidence 45678999999999999999999853 5566667777777777777766654 57899999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
+|...+.++++.++++|+|.|.++........+ +..+... ++| .++|.||+|+.+...... ++.+++...++
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v~~---~~a~~fa~~~~ 145 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVVST---EEAQEFADELG 145 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheecCH---HHHHHHHHhcC
Confidence 999999999999999999999998554333333 2333333 667 678999999976332211 24456666655
Q ss_pred CCCCCcc-EEEcchhhhH
Q 011581 236 FPGDDVP-IISGSALLAL 252 (482)
Q Consensus 236 ~~~~~~~-~i~~Sa~~g~ 252 (482)
+| ++++||+.+.
T Consensus 146 -----~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 146 -----IPIFLETSAKDST 158 (205)
T ss_pred -----CcceeecccCCcc
Confidence 45 9999999887
No 228
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=1.4e-15 Score=142.93 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=103.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe--ecCCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY--ETENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~~i~liDtPG~~~ 160 (482)
...++|+++|..|+|||||+++++... +..+....+..+.....+ ......+.||||||+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~----------------f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE----------------FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC----------------CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 556899999999999999999987431 111111122222222223 23346788999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHH--HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAK--QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~--~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
|.......++.+|++|+|+|.++....+....| ..+. ..++| +++|.||+|+.......+ ++ ++.+.
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~~----~~-~~~~~---- 144 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK----QV-TFHRK---- 144 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCHH----HH-HHHHh----
Confidence 987777778999999999999986554433322 2222 23577 889999999864211111 22 22222
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++++.+||++|. |+.+++++|...+
T Consensus 145 -~~~~~~e~SAk~~~------------------~i~~~f~~l~~~~ 171 (219)
T PLN03071 145 -KNLQYYEISAKSNY------------------NFEKPFLYLARKL 171 (219)
T ss_pred -cCCEEEEcCCCCCC------------------CHHHHHHHHHHHH
Confidence 23689999999998 7888888877654
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.66 E-value=3.4e-15 Score=133.40 Aligned_cols=155 Identities=26% Similarity=0.363 Sum_probs=104.0
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh-------
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD------- 160 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~------- 160 (482)
|+++|+.|+|||||++.|++.... .+.+...+.|.......+ + ..+.+|||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL--------------ARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce--------------eeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHH
Confidence 899999999999999999842000 011122333443333222 2 2899999999643
Q ss_pred ---hHHHHH---hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 161 ---YVKNMI---TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 161 ---~~~~~~---~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
|...+. ......+++++++|..........+.+..+...+.| +++++||+|+....+... ....+...++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~~~-~~~~~~~~l~~~ 142 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAK-ALKEIKKELKLF 142 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHHHH-HHHHHHHHHHhc
Confidence 222222 222356889999999888777777788888888888 889999999976543332 223444445421
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
....+++++|++++. |+.++++.|.++
T Consensus 143 ---~~~~~~~~~Sa~~~~------------------~~~~l~~~l~~~ 169 (170)
T cd01876 143 ---EIDPPIILFSSLKGQ------------------GIDELRALIEKW 169 (170)
T ss_pred ---cCCCceEEEecCCCC------------------CHHHHHHHHHHh
Confidence 124789999999988 888999988764
No 230
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.3e-15 Score=139.78 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=99.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|..|+|||||+++|++..- . . ......|.+.......+......+.+|||||+.+|....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-------~-----~--~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-------S-----E--STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-------C-----C--CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 4799999999999999999974310 0 0 001111222222222333334567899999999998888
Q ss_pred HhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
...+..+|++|+|+|+++....... ..+..+... ..| ++++.||+|+.+...... .+...+.+.. .+
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~---~~~~~~~~~~-----~~ 137 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDS---NIAKSFCDSL-----NI 137 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCH---HHHHHHHHHc-----CC
Confidence 8889999999999999875443322 222233322 355 899999999875322111 1222333333 25
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+++.+||++|. |+.++++.|...+
T Consensus 138 ~~~evSa~~~~------------------~i~~~f~~l~~~~ 161 (188)
T cd04125 138 PFFETSAKQSI------------------NVEEAFILLVKLI 161 (188)
T ss_pred eEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 79999999987 7777777766543
No 231
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=1.4e-15 Score=142.38 Aligned_cols=159 Identities=14% Similarity=0.081 Sum_probs=102.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|..++|||||+++|+... +.. . ..|+........+....+.||||||++.|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~----------------f~~-~--~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR----------------FKD-T--VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC----------------CCC-C--CCccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 479999999999999999997431 110 0 112222222223345678999999999998888
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHH----------------HHHHHHH
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEE----------------LLQLVEL 225 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~----------------~~~~i~~ 225 (482)
...++.+|++|+|+|+++.......+ .+..+.. .++| +|+|.||+|+.+... ....-.+
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHH
Confidence 88889999999999999854433332 2222222 2466 899999999975100 0000112
Q ss_pred HHHHHHhhcCC---------CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 226 EVRELLSSYEF---------PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 226 ~i~~~l~~~~~---------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+...+.++.+. ....++++++||++|. |+.++++.+.+.
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~------------------~V~elf~~i~~~ 188 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY------------------NVDELFEYLFNL 188 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 34444444321 0123689999999998 777777777653
No 232
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=2.1e-15 Score=136.47 Aligned_cols=157 Identities=19% Similarity=0.175 Sum_probs=99.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCcee-eeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITI-NTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|+.++|||||+++|.+..- ..+....+.. ......+......+.+|||||+++|...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF----------------PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhc
Confidence 5899999999999999999975311 0000001100 0112223223346789999999998776
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHH-HH-HHHHHH--cCCCcEEEEEecCCCCChHHHHHHH---------HHHHHHHH
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTK-EH-ILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLV---------ELEVRELL 231 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~-e~-l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~~~l 231 (482)
....+..+|++++|+|.++....... +. +..+.. .++| +++|.||+|+.......+.+ ..+.+++.
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 66677899999999998864332222 21 222222 2677 89999999987533222111 11233334
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+.++ ..+++++||++|. |+.++++.|..
T Consensus 145 ~~~~----~~~~~~~Sa~~~~------------------~v~~lf~~l~~ 172 (175)
T cd01870 145 NKIG----AFGYMECSAKTKE------------------GVREVFEMATR 172 (175)
T ss_pred HHcC----CcEEEEeccccCc------------------CHHHHHHHHHH
Confidence 4333 3579999999998 89999998865
No 233
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=1.9e-15 Score=144.31 Aligned_cols=158 Identities=20% Similarity=0.151 Sum_probs=102.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCcee-eeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITI-NTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
.+|+++|..|+|||||++++++..- +.+.. .|+ +.....+..+ ...+.||||+|+++|.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f----------------~~~y~--pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~ 62 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF----------------EEQYT--PTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP 62 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC----------------CCCCC--CChhHhEEEEEEECCEEEEEEEEECCCChhhh
Confidence 3799999999999999999974311 00000 111 1112223333 3567899999999997
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH------------cCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ------------VGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~------------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
......+..+|++|+|+|.++....+. ...+..+.. .++| +|+|.||+|+....+.. .+++.+
T Consensus 63 ~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~v~---~~ei~~ 138 (247)
T cd04143 63 AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPREVQ---RDEVEQ 138 (247)
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhccccC---HHHHHH
Confidence 766667789999999999997543222 222222221 2567 89999999997522111 124444
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQ 287 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~ 287 (482)
++... ..++++++||++|. |++++++.|.+....|.
T Consensus 139 ~~~~~----~~~~~~evSAktg~------------------gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 139 LVGGD----ENCAYFEVSAKKNS------------------NLDEMFRALFSLAKLPN 174 (247)
T ss_pred HHHhc----CCCEEEEEeCCCCC------------------CHHHHHHHHHHHhcccc
Confidence 44321 24679999999998 89999999988654443
No 234
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=1e-15 Score=138.07 Aligned_cols=160 Identities=16% Similarity=0.040 Sum_probs=101.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcC--CceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERAR--GITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
++.++|+++|..|+|||||++++++..-. ..+... +.........+......+.+||++|.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~---------------~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 66 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS---------------LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEV 66 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC---------------cccCCCccCcceEEEEEEECCeEEEEEEEecCCccc
Confidence 45689999999999999999999753110 011111 1111112222333335678999999998
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH-cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
|.......+..+|++|+|+|+++....+. .+.+..+.. .++| +++|+||+|+.+...... .+..++.+.+++
T Consensus 67 ~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~---~~~~~~~~~~~~-- 140 (169)
T cd01892 67 AILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRYE---VQPDEFCRKLGL-- 140 (169)
T ss_pred ccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEcccccccccccc---cCHHHHHHHcCC--
Confidence 87766777789999999999987533222 122222221 2577 899999999865322111 122334444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.|.+.+
T Consensus 141 --~~~~~~Sa~~~~------------------~v~~lf~~l~~~~ 165 (169)
T cd01892 141 --PPPLHFSSKLGD------------------SSNELFTKLATAA 165 (169)
T ss_pred --CCCEEEEeccCc------------------cHHHHHHHHHHHh
Confidence 235899999998 8888888887654
No 235
>PLN03108 Rab family protein; Provisional
Probab=99.65 E-value=2.6e-15 Score=140.28 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=101.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++...... .....|.+.......+......+.+|||||+++|..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~--------------~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------HDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC--------------CCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 358999999999999999999975311000 000112222222222322234578999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....++.+|++|+|+|+++....+.. +.+..+.. ..+| ++++.||+|+....... .++..++.+..+
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 142 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEHG---- 142 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCCC---HHHHHHHHHHcC----
Confidence 888888999999999999875443332 22222222 2566 88999999987532111 123444454433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++++||+++. |+.++++++...
T Consensus 143 -~~~~e~Sa~~~~------------------~v~e~f~~l~~~ 166 (210)
T PLN03108 143 -LIFMEASAKTAQ------------------NVEEAFIKTAAK 166 (210)
T ss_pred -CEEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 689999999988 677766666543
No 236
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=149.38 Aligned_cols=158 Identities=21% Similarity=0.198 Sum_probs=111.5
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCC
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPG 157 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG 157 (482)
-+.+...+.|+++|++|+|||||+|+|++....... ..-.|.+.....+... ++.+.+-||-|
T Consensus 186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d----------------~LFATLdpttR~~~l~~g~~vlLtDTVG 249 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVAD----------------QLFATLDPTTRRIELGDGRKVLLTDTVG 249 (411)
T ss_pred hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccc----------------cccccccCceeEEEeCCCceEEEecCcc
Confidence 334567899999999999999999999854222111 1123666666666665 68899999999
Q ss_pred chhh--------HHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHH
Q 011581 158 HADY--------VKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVEL 225 (482)
Q Consensus 158 ~~~~--------~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~ 225 (482)
+.+- ++.++.....+|++++|||+++.. ..+.......+..+ .+| +|+|+||+|++.+.....
T Consensus 250 FI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~~~---- 324 (411)
T COG2262 250 FIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEILA---- 324 (411)
T ss_pred CcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhhhh----
Confidence 6333 566677778999999999999863 34444444555554 456 899999999987544111
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+... ....+++||++|. |++.|++.|...++
T Consensus 325 ----~~~~~-----~~~~v~iSA~~~~------------------gl~~L~~~i~~~l~ 356 (411)
T COG2262 325 ----ELERG-----SPNPVFISAKTGE------------------GLDLLRERIIELLS 356 (411)
T ss_pred ----hhhhc-----CCCeEEEEeccCc------------------CHHHHHHHHHHHhh
Confidence 11111 1147999999998 89999999988765
No 237
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=2.9e-15 Score=133.87 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=100.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~~ 163 (482)
.+|+++|+.++|||||+.+++... +..+...++..+.....+...+ ..+.+|||||+.+|..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE----------------FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC----------------CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh
Confidence 379999999999999999997431 1111112222222222333333 5678999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.....+..+|++++|+|.++....+. ...+..+... ++| +++|.||+|+........ ++...+.+..+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~~---~~~~~~~~~~~---- 136 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVGD---EQGNKLAKEYG---- 136 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCCH---HHHHHHHHHcC----
Confidence 88888899999999999987533222 2222222222 456 889999999865322211 13333333332
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.+++++||++|. |+.++++.|.+
T Consensus 137 -~~~~e~Sa~~~~------------------~v~~~f~~l~~ 159 (161)
T cd04117 137 -MDFFETSACTNS------------------NIKESFTRLTE 159 (161)
T ss_pred -CEEEEEeCCCCC------------------CHHHHHHHHHh
Confidence 679999999998 88999988865
No 238
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.65 E-value=1.4e-15 Score=118.91 Aligned_cols=81 Identities=31% Similarity=0.452 Sum_probs=75.3
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccC
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRG 373 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 373 (482)
|+|+|+|+|+..+.|+.++|+|++|.+++||++.++|.+. .++|++|+.++.+++.|.|||+|+|.|+ +..++++|
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~--~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G 76 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK--TSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRG 76 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC--eEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCC
Confidence 6899999999888888899999999999999999999864 7899999999999999999999999998 46789999
Q ss_pred eEEeC
Q 011581 374 MVLAK 378 (482)
Q Consensus 374 ~vl~~ 378 (482)
++||.
T Consensus 77 ~vl~~ 81 (81)
T cd03695 77 DVIVA 81 (81)
T ss_pred CEEeC
Confidence 99983
No 239
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.65 E-value=1.9e-15 Score=136.93 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=104.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
++|+++|+.++|||+|+.++... . +..+....+.... ....++.....+.||||+|+++|...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~-------~---------f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN-------K---------FPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC-------C---------CCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCcccccc
Confidence 58999999999999999999742 1 1111111111111 11222323456789999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHH--cCCCcEEEEEecCCCCChHHH-------HHHHHHHHHHHHhh
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQ--VGVPNMVVFLNKQDQVDDEEL-------LQLVELEVRELLSS 233 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~--~~ip~iivviNK~D~~~~~~~-------~~~i~~~i~~~l~~ 233 (482)
....++.+|++|+|+|.++....+.. ..+..++. .++| +++|.||+|+.+.... .....++..++.+.
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 88888999999999999976554443 23344432 2567 8999999999653210 00112244555554
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+. .+++.+||++|. |++++++.+.+.+
T Consensus 145 ~~~----~~~~E~SAk~~~------------------nV~~~F~~~~~~~ 172 (176)
T cd04133 145 IGA----AAYIECSSKTQQ------------------NVKAVFDAAIKVV 172 (176)
T ss_pred cCC----CEEEECCCCccc------------------CHHHHHHHHHHHH
Confidence 432 369999999998 7888888887743
No 240
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.65 E-value=1.3e-15 Score=121.34 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=77.9
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEe-CceEeeccCCe
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVEL-IMPVACEQGMR 462 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~-~~p~~~~~~~r 462 (482)
++++|+|++.||+++ .+|.+||++++|+++.+++|+|..+.. +++++||.+.|+++| .+|+|+++++|
T Consensus 2 ~~~~f~A~i~il~~~-----~~i~~Gy~~~l~~~t~~~~~~i~~i~~------~~l~~g~~~~v~i~f~~~p~~~e~~gr 70 (87)
T cd03708 2 ACWEFEAEILVLHHP-----TTISPGYQATVHIGSIRQTARIVSIDK------DVLRTGDRALVRFRFLYHPEYLREGQR 70 (87)
T ss_pred ceeEEEEEEEEEcCC-----CcccCCCEeEEEEcCCEEEEEEEeccH------hhccCCCeEEEEEEECCCCcEEccCCe
Confidence 468899999999985 589999999999999999999999864 679999999999995 89999999999
Q ss_pred EEEeeCCcEEEEEEEeee
Q 011581 463 FAIREGGKTVGAGVIQSI 480 (482)
Q Consensus 463 filr~~~~tvg~G~v~~v 480 (482)
|+||++ +|+|+|+|+++
T Consensus 71 f~lr~g-~tva~G~I~~~ 87 (87)
T cd03708 71 LIFREG-RTKGVGEVTKV 87 (87)
T ss_pred EEEECC-CcEEEEEEEEC
Confidence 999886 99999999875
No 241
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8e-15 Score=128.71 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=114.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEeecCCeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
..+|+++|..++|||+|+.++....-+ ..-...|-++.. ...++....++.+|||+|+++|.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd----------------~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFr 85 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 85 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhc----------------ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHh
Confidence 479999999999999999999864221 111222333332 33344445677899999999999
Q ss_pred HHHHhhcccCCeEEEeecCCC-CChHHHHHHHHHHHHcC-C--CcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVG-V--PNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~-i--p~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
...-++++.+.++|+|.|.++ ..+.+|...+.-++..+ - ..+++|.||.||.+..+... ++-....++++
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~---eEg~~kAkel~--- 159 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI---EEGERKAKELN--- 159 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH---HHHHHHHHHhC---
Confidence 999999999999999999987 45567766666665542 2 23677889999998644332 12233444433
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
..|+.+||+.|. ++..|+..|...+|.+
T Consensus 160 --a~f~etsak~g~------------------NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 160 --AEFIETSAKAGE------------------NVKQLFRRIAAALPGM 187 (221)
T ss_pred --cEEEEecccCCC------------------CHHHHHHHHHHhccCc
Confidence 679999999998 6788888888777655
No 242
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.64 E-value=1.9e-15 Score=136.93 Aligned_cols=160 Identities=23% Similarity=0.208 Sum_probs=113.5
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
+...+...+|+++|..|+|||||+++|..... .....|.......+..++..+.+||.+|+
T Consensus 8 ~~~~~~~~~ililGl~~sGKTtll~~l~~~~~-------------------~~~~pT~g~~~~~i~~~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 8 LKSKKKEIKILILGLDGSGKTTLLNRLKNGEI-------------------SETIPTIGFNIEEIKYKGYSLTIWDLGGQ 68 (175)
T ss_dssp CTTTTSEEEEEEEESTTSSHHHHHHHHHSSSE-------------------EEEEEESSEEEEEEEETTEEEEEEEESSS
T ss_pred hcccCcEEEEEEECCCccchHHHHHHhhhccc-------------------cccCcccccccceeeeCcEEEEEEecccc
Confidence 34446789999999999999999999963200 00111333334455668899999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
..+...+..++..+|++|+|||+++.. ..+.++.+..+.. .++| ++|++||+|+.+.... .++.+.+.-
T Consensus 69 ~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~~-----~~i~~~l~l 142 (175)
T PF00025_consen 69 ESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMSE-----EEIKEYLGL 142 (175)
T ss_dssp GGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSSTH-----HHHHHHTTG
T ss_pred ccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcchh-----hHHHhhhhh
Confidence 988888888889999999999999743 3555555544433 2567 8899999998763221 133333332
Q ss_pred cCCC-CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 234 YEFP-GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 234 ~~~~-~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
..+. ...+.++.+||.+|. |+.+.+++|.+
T Consensus 143 ~~l~~~~~~~v~~~sa~~g~------------------Gv~e~l~WL~~ 173 (175)
T PF00025_consen 143 EKLKNKRPWSVFSCSAKTGE------------------GVDEGLEWLIE 173 (175)
T ss_dssp GGTTSSSCEEEEEEBTTTTB------------------THHHHHHHHHH
T ss_pred hhcccCCceEEEeeeccCCc------------------CHHHHHHHHHh
Confidence 2232 456889999999998 89999998875
No 243
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.64 E-value=1.7e-15 Score=131.54 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=102.2
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCc
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 158 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~ 158 (482)
++...++|.++|.+|+|||+|+|++....- .......|..+.....+..++ ..+.||||+|+
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF----------------~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQ 68 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKF----------------SQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQ 68 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHH----------------HHHhccccchhheeeEEEEcCeEEEEEEEecccH
Confidence 456789999999999999999999986421 111112222222222333334 44669999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHH-----HHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-----LLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVREL 230 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-----~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~ 230 (482)
++|...-...++.+|++++|.|.+..-.....+.| ..+.-. .-| +||+.||+|+.+...+.... ...+..
T Consensus 69 ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~VS~-~~Aq~W 146 (210)
T KOG0394|consen 69 ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQVSE-KKAQTW 146 (210)
T ss_pred HHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccceeeH-HHHHHH
Confidence 99999888899999999999999875554444443 333221 346 89999999997643222211 134444
Q ss_pred HhhcCCCCCCccEEEcchhhhHHH
Q 011581 231 LSSYEFPGDDVPIISGSALLALEA 254 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~ 254 (482)
.+.- .++|++.+||+.+.|.
T Consensus 147 C~s~----gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 147 CKSK----GNIPYFETSAKEATNV 166 (210)
T ss_pred HHhc----CCceeEEecccccccH
Confidence 4443 3799999999999843
No 244
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.64 E-value=1.3e-15 Score=137.68 Aligned_cols=155 Identities=18% Similarity=0.154 Sum_probs=100.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee--eeeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
++|+++|..|+|||||+.++++.. + ..+... ...+. ....++.....+.+|||||+.+|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-------~---------~~~~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-------Y---------PTEYVP-TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-------C---------CCCCCC-ceeeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 479999999999999999987521 0 001011 11111 1222332335678999999999987
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHH--cCCCcEEEEEecCCCCChHHHHH--------H-HHHHHHHH
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQ--------L-VELEVREL 230 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~--------~-i~~~i~~~ 230 (482)
.....++.+|++|+|+|.++....+.. ..+..+.. .++| ++++.||+|+........ . -.++...+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 777778899999999999976543332 23333333 2567 899999999875321110 0 01133444
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
.+..+. .+++++||++|. |+.++++.+.
T Consensus 143 a~~~~~----~~~~e~Sa~~~~------------------~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGA----CEYIECSALTQK------------------NLKEVFDTAI 170 (173)
T ss_pred HHHhCC----CeEEEEeCCCCC------------------CHHHHHHHHH
Confidence 444432 479999999998 8889988764
No 245
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.63 E-value=2.4e-15 Score=123.65 Aligned_cols=89 Identities=42% Similarity=0.751 Sum_probs=80.3
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc------ccccccCCCCEEEEEEEeCceEee
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELIMPVAC 457 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~~~~g~~~~v~~~~~~p~~~ 457 (482)
++++|+|++.+++++ .||..||++++|+|+.++.|+|..|..+.| ++++.+++||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~~-----~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYVLDHP-----EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEE
Confidence 468999999999875 489999999999999999999999976543 346789999999999999999999
Q ss_pred c------cCCeEEEeeCCcEEEEEEE
Q 011581 458 E------QGMRFAIREGGKTVGAGVI 477 (482)
Q Consensus 458 ~------~~~rfilr~~~~tvg~G~v 477 (482)
+ .++||+||++|+|+|+|+|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9 8899999999999999986
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.63 E-value=9.8e-15 Score=133.06 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=104.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
+..++|+++|..++|||||+.++.... +..+....+.... ....++.....+.||||+|.++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~----------------f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDC----------------FPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCC----------------CCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 456799999999999999999997531 1111111111111 11222233456789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHH-H--------HHHHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELL-Q--------LVELEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~-~--------~i~~~i~ 228 (482)
.......++.+|++|+|+|.++....+.. ..+..+... +.| +|+|.||+|+.+..... + .-.++..
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 145 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGA 145 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHH
Confidence 88777788999999999999886554432 222333332 566 88999999985421100 0 1123455
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhh-HHHHHHHhhh
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDK-IYELMDSVDS 281 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~g-i~~Ll~~l~~ 281 (482)
++.++++. .+++.+||++|. | +.++++.+..
T Consensus 146 ~~a~~~~~----~~~~E~SAk~~~------------------n~v~~~F~~~~~ 177 (182)
T cd04172 146 NMAKQIGA----ATYIECSALQSE------------------NSVRDIFHVATL 177 (182)
T ss_pred HHHHHcCC----CEEEECCcCCCC------------------CCHHHHHHHHHH
Confidence 66666552 489999999998 5 8888877655
No 247
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.63 E-value=3.3e-15 Score=140.59 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=97.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
.+|+++|..|+|||||+++|+..... ....+...+.........++.....+.||||||++++....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-------------~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-------------DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-------------ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhH
Confidence 47999999999999999999642110 00000111111112223333345678999999998554332
Q ss_pred Hhhcc-cCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 166 ITGAA-QMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 166 ~~~~~-~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.+. .+|++++|+|+++..... ..+.+..+.. .++| +|+|.||+|+....+... ++..++...+
T Consensus 68 --~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~~---~~~~~~a~~~----- 136 (221)
T cd04148 68 --CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVSV---QEGRACAVVF----- 136 (221)
T ss_pred --HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceecH---HHHHHHHHHc-----
Confidence 334 899999999999854332 2333333333 3577 899999999976332211 1223333333
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..+++++||++|. |+.++++.+.+.+
T Consensus 137 ~~~~~e~SA~~~~------------------gv~~l~~~l~~~~ 162 (221)
T cd04148 137 DCKFIETSAGLQH------------------NVDELLEGIVRQI 162 (221)
T ss_pred CCeEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 2578999999998 8888888888755
No 248
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.1e-14 Score=132.24 Aligned_cols=158 Identities=15% Similarity=0.106 Sum_probs=101.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|..++|||||++++.+.. ++.+....+..+. ....++.....+.||||||+++|...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC----------------YPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc----------------CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhc
Confidence 589999999999999999997531 1111111111111 11122223456789999999999877
Q ss_pred HHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHH---------HHHHHHHHHH
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQ---------LVELEVRELL 231 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~---------~i~~~i~~~l 231 (482)
....++.+|++|+|+|.++....+. ...+..+... ++| +++|.||+|+.+...... .-.++..++.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 7778889999999999987654433 2333333332 566 889999999864211000 0112455555
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
+.++. .+++.+||++|.| |+.++++.+..
T Consensus 145 ~~~~~----~~~~E~SA~~~~~-----------------~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGA----EIYLECSAFTSEK-----------------SVRDIFHVATM 173 (178)
T ss_pred HHhCC----CEEEECccCcCCc-----------------CHHHHHHHHHH
Confidence 55542 4799999999872 37788777665
No 249
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=3.8e-15 Score=127.57 Aligned_cols=137 Identities=24% Similarity=0.279 Sum_probs=97.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC----chhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG----HADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----~~~~ 161 (482)
.+|.++|.+++|||||+++|.+... ....|... .| .+ .+||||| +..|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~--------------------~~~KTq~i---~~--~~---~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI--------------------RYKKTQAI---EY--YD---NTIDTPGEYIENPRF 53 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC--------------------CcCcccee---Ee--cc---cEEECChhheeCHHH
Confidence 4799999999999999999975311 11122221 11 11 4599999 5677
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
....+.....||.+++|.|+++....--- ..+...+.| +|=|+||+|+...++..+ ..+++|+..|+.
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~~~pP---~fa~~f~~p-vIGVITK~Dl~~~~~~i~----~a~~~L~~aG~~---- 121 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRSVFPP---GFASMFNKP-VIGVITKIDLPSDDANIE----RAKKWLKNAGVK---- 121 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCccCCc---hhhcccCCC-EEEEEECccCccchhhHH----HHHHHHHHcCCC----
Confidence 77777778899999999999975331111 234455677 889999999995333333 456677777763
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
.++.+|+.+|+ |+++|.++|.
T Consensus 122 ~if~vS~~~~e------------------Gi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIFEVSAVTGE------------------GIEELKDYLE 142 (143)
T ss_pred CeEEEECCCCc------------------CHHHHHHHHh
Confidence 35999999998 9999999875
No 250
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.62 E-value=5.1e-15 Score=153.58 Aligned_cols=154 Identities=23% Similarity=0.299 Sum_probs=112.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
..+|+++|++|+|||||+|+|++.....|+ ..|+|++.....+...++.+.++|+||--++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgN----------------wpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~ 66 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGN----------------WPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY 66 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecC----------------CCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC
Confidence 356999999999999999999987666664 6789999999999999999999999993222
Q ss_pred ---HHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 ---VKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ---~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.+-+...+ ..+|++|-|+||++ .+.....-.++..+|+| +|+++|++|....... +-+..++-+.+|
T Consensus 67 S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~Gi----~ID~~~L~~~LG- 138 (653)
T COG0370 67 SEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIP-MILALNMIDEAKKRGI----RIDIEKLSKLLG- 138 (653)
T ss_pred CchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcCC----cccHHHHHHHhC-
Confidence 11112222 36799999999985 11222222355677999 9999999997642211 112233333334
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+|++++||.+|. |++++++.+....+
T Consensus 139 ----vPVv~tvA~~g~------------------G~~~l~~~i~~~~~ 164 (653)
T COG0370 139 ----VPVVPTVAKRGE------------------GLEELKRAIIELAE 164 (653)
T ss_pred ----CCEEEEEeecCC------------------CHHHHHHHHHHhcc
Confidence 899999999998 89999999887543
No 251
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=3.1e-15 Score=159.25 Aligned_cols=145 Identities=23% Similarity=0.250 Sum_probs=103.2
Q ss_pred ecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH-----HH
Q 011581 92 GHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN-----MI 166 (482)
Q Consensus 92 G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~-----~~ 166 (482)
|.+|+|||||+|+|++... ......|+|++.....++.++..+.+|||||+.++... +.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~----------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ----------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC----------------eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 8899999999999986421 12235688998887778888889999999998776432 11
Q ss_pred h---hcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccE
Q 011581 167 T---GAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPI 243 (482)
Q Consensus 167 ~---~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 243 (482)
+ ....+|++++|+|+++.. ...+....+...++| +++|+||+|+.+...... +.+++.+.++ +|+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i~~----d~~~L~~~lg-----~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIP-MILALNLVDEAEKKGIRI----DEEKLEERLG-----VPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCC-EEEEEehhHHHHhCCChh----hHHHHHHHcC-----CCE
Confidence 1 124789999999998732 233444455567888 889999999864322111 2233333333 689
Q ss_pred EEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 244 ISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 244 i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+++||++|. |++++++.+.+.
T Consensus 133 v~tSA~tg~------------------Gi~eL~~~i~~~ 153 (591)
T TIGR00437 133 VPTSATEGR------------------GIERLKDAIRKA 153 (591)
T ss_pred EEEECCCCC------------------CHHHHHHHHHHH
Confidence 999999998 889999988764
No 252
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.60 E-value=2.6e-14 Score=133.92 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=93.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|..++|||+|+.+|+... ++++....+..+. ....++.....+.||||+|++.|...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~----------------f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA----------------YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC----------------CCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 589999999999999999997521 1111111111111 11122223456789999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHH-HHHH-HHHH--cCCCcEEEEEecCCCCChHHHHHH--------H-HHHHHHHH
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTK-EHIL-LAKQ--VGVPNMVVFLNKQDQVDDEELLQL--------V-ELEVRELL 231 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~-~~~~--~~ip~iivviNK~D~~~~~~~~~~--------i-~~~i~~~l 231 (482)
....+..+|++|+|+|.++....+.. +.|. .... .++| +|+|.||+|+.++...... + .++..++.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 88888999999999999986443332 2232 2222 3567 8999999999653221111 1 12344455
Q ss_pred hhcCCCCCCccEEEcchhhhH
Q 011581 232 SSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
+.++. ++++.+||+++.
T Consensus 145 k~~~~----~~y~E~SAk~~~ 161 (222)
T cd04173 145 KQVGA----VSYVECSSRSSE 161 (222)
T ss_pred HHcCC----CEEEEcCCCcCC
Confidence 55442 589999999876
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.60 E-value=8.4e-15 Score=123.39 Aligned_cols=107 Identities=27% Similarity=0.366 Sum_probs=79.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh------
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD------ 160 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~------ 160 (482)
+|+++|.+|+|||||+|+|++.. ........+.|.......+...+..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~---------------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK---------------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST---------------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc---------------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 58999999999999999998531 111222345566665556677888999999999532
Q ss_pred ---hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 161 ---YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 161 ---~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
........+..+|++++|+|+.+.......+.++.++ .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 3345666668899999999988855566677777775 5666 8999998
No 254
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=2.5e-14 Score=134.86 Aligned_cols=149 Identities=16% Similarity=0.082 Sum_probs=95.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
....+|+++|..++|||+|+.++.... +..+....+..+. ....+......+.||||+|+++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~----------------F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~ 74 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDC----------------YPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY 74 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCC----------------CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh
Confidence 346799999999999999999997431 1111111111111 11122223456789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHH--cCCCcEEEEEecCCCCChHHH---------HHHHHHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVDDEEL---------LQLVELEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~--~~ip~iivviNK~D~~~~~~~---------~~~i~~~i~ 228 (482)
......+++.+|++|+|+|.++....+. ...+..+.. .++| +|+|.||+|+.+.... ...-.++..
T Consensus 75 ~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~ 153 (232)
T cd04174 75 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC 153 (232)
T ss_pred HHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHHH
Confidence 8877788899999999999987655443 222333332 2566 8899999998542100 000112556
Q ss_pred HHHhhcCCCCCCccEEEcchhhhH
Q 011581 229 ELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
++.+++++ .+++.+||++|.
T Consensus 154 ~~a~~~~~----~~~~EtSAktg~ 173 (232)
T cd04174 154 ALAKQLGA----EVYLECSAFTSE 173 (232)
T ss_pred HHHHHcCC----CEEEEccCCcCC
Confidence 66666553 368999999985
No 255
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.59 E-value=1.7e-14 Score=125.57 Aligned_cols=148 Identities=21% Similarity=0.195 Sum_probs=99.2
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCce-eeeeeeEee--cCCeEEEEEeCCCchhhHHHHH
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT-INTATVEYE--TENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~T-i~~~~~~~~--~~~~~i~liDtPG~~~~~~~~~ 166 (482)
++|++|+|||||+++|.+.... .. ....| .+.....+. .....+.+||+||+.++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~---------------~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV---------------PE--EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC---------------Cc--ccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 5899999999999999864221 00 11111 222222222 2356789999999999988888
Q ss_pred hhcccCCeEEEeecCCCCChHHHHHHH-----HHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTKEHI-----LLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~e~l-----~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
..+..+|++++|+|++.+........+ ......++| +++++||+|+.......... ........ ...
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~---~~~~~~~~----~~~ 135 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE---LAEQLAKE----LGV 135 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH---HHHHHHhh----cCC
Confidence 888999999999999987665554433 233344677 89999999998744322211 01111111 247
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
+++++|+..+. |+.+++++|.
T Consensus 136 ~~~~~s~~~~~------------------~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTGE------------------NVEELFEELA 156 (157)
T ss_pred cEEEEecCCCC------------------ChHHHHHHHh
Confidence 89999999987 7888888764
No 256
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.58 E-value=3.4e-14 Score=134.60 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=60.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh------
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD------ 160 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~------ 160 (482)
+|+++|.+|+|||||+++|++.....+. ..+.|.+.....+++++..+.+|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~----------------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA----------------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC----------------CCCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 6899999999999999999865322111 223355444555666788999999999743
Q ss_pred -hHHHHHhhcccCCeEEEeecCCCC
Q 011581 161 -YVKNMITGAAQMDGAILVVSGADG 184 (482)
Q Consensus 161 -~~~~~~~~~~~~D~~ilVvda~~g 184 (482)
+...+...++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 334566778899999999998764
No 257
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.58 E-value=2.1e-14 Score=132.71 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=98.4
Q ss_pred EecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe--ecCCeEEEEEeCCCchhhHHHHHhh
Q 011581 91 IGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY--ETENRHYAHVDCPGHADYVKNMITG 168 (482)
Q Consensus 91 ~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~~i~liDtPG~~~~~~~~~~~ 168 (482)
+|..++|||||+.+++.. .+..+....+..+.....+ +.....+.||||||+++|...+..+
T Consensus 1 vG~~~vGKTsLi~r~~~~----------------~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG----------------EFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcC----------------CCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 599999999999999742 1111111122222222223 3334678899999999998888888
Q ss_pred cccCCeEEEeecCCCCChHHHHH-HHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 169 AAQMDGAILVVSGADGPMPQTKE-HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
++.+|++|+|+|+++....+... .+..+.. .++| +++|.||+|+.......+ ++ .+.+. ..++++.
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~~----~~-~~~~~-----~~~~~~e 133 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRKVKAK----SI-TFHRK-----KNLQYYD 133 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCHH----HH-HHHHH-----cCCEEEE
Confidence 99999999999999876544332 2333433 3677 889999999854211111 11 22222 2478999
Q ss_pred cchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 246 GSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 246 ~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+||++|. |+.+++++|...+
T Consensus 134 ~SAk~~~------------------~v~~~F~~l~~~i 153 (200)
T smart00176 134 ISAKSNY------------------NFEKPFLWLARKL 153 (200)
T ss_pred EeCCCCC------------------CHHHHHHHHHHHH
Confidence 9999998 7888888887654
No 258
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=4.7e-14 Score=130.39 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=103.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCch-----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA----- 159 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~----- 159 (482)
++|+++|.+|+|||||+|+|++..... .+... .. ....|.... .+.. ....+.+|||||..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~-~~~~~----~~------~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~ 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE-EGAAP----TG------VVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC-CCccc----cC------ccccccCce--eeecCCCCCceEEeCCCCCcccCC
Confidence 689999999999999999998632110 00000 00 000111111 1211 13468999999974
Q ss_pred --hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH------------HHHHHHHH
Q 011581 160 --DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE------------ELLQLVEL 225 (482)
Q Consensus 160 --~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~------------~~~~~i~~ 225 (482)
+|... ..+..+|++++|.| ..........+..+...+.| +++|+||+|+..+. +..+.+.+
T Consensus 69 ~~~~l~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~ 143 (197)
T cd04104 69 PDDYLEE--MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRD 143 (197)
T ss_pred HHHHHHH--hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCC-EEEEEecccchhhhhhccccccccHHHHHHHHHH
Confidence 44332 23567898888754 44666777778888888888 89999999995421 23444444
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhh--hHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALL--ALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~--g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
.+.+.++..+. ...+++.+|+.. ++ ++..|.+.+...+|..
T Consensus 144 ~~~~~~~~~~~--~~p~v~~vS~~~~~~~------------------~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 144 NCLENLQEAGV--SEPPVFLVSNFDPSDY------------------DFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHHHcCC--CCCCEEEEeCCChhhc------------------ChHHHHHHHHHHhhHH
Confidence 55555554443 346899999983 44 6788889888877653
No 259
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.58 E-value=2.8e-14 Score=115.93 Aligned_cols=95 Identities=27% Similarity=0.429 Sum_probs=86.2
Q ss_pred CeEEeCCCCCCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeC
Q 011581 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELI 452 (482)
Q Consensus 373 G~vl~~~~~~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~ 452 (482)
|++++.++...+++.|++++.++...+ .+|+.++++++|+|+.++.|+|.-+. .+.+++|+.+.++++|+
T Consensus 1 G~vl~~~~~~~~~~~~~~~i~~l~~~~----~~l~~~~~v~~~~Gt~~v~~ri~ll~------~~~~~pg~~~~a~l~l~ 70 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSAP----RPLKHRQRVHLHHGTSEVLARVVLLD------RDELAPGEEALAQLRLE 70 (97)
T ss_pred CCEEecCCCcCCceEEEEEEEEECCCC----ccCCCCCeEEEEeccceEEEEEEeCC------ccccCCCCEEEEEEEEC
Confidence 789999988888899999999988652 58999999999999999999999664 25689999999999999
Q ss_pred ceEeeccCCeEEEeeCC--cEEEEEEE
Q 011581 453 MPVACEQGMRFAIREGG--KTVGAGVI 477 (482)
Q Consensus 453 ~p~~~~~~~rfilr~~~--~tvg~G~v 477 (482)
+|++++.|+||+||+.+ +|+|+|+|
T Consensus 71 ~pl~~~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 71 EPLVALRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred CcEeecCCCeEEEeeCCCCeEEEeEEC
Confidence 99999999999999998 99999986
No 260
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=8e-14 Score=144.07 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=74.8
Q ss_pred CeEEEEEeCCCchh-----hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCC--CcEEEEEecCCCCChH-H
Q 011581 147 NRHYAHVDCPGHAD-----YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV--PNMVVFLNKQDQVDDE-E 218 (482)
Q Consensus 147 ~~~i~liDtPG~~~-----~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~i--p~iivviNK~D~~~~~-~ 218 (482)
...++|+||||... +.+.|...+..+|++++|+|+..+.....++.+..++..+. | +++|+||+|+.+.+ +
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 35789999999532 45567778899999999999999888888888888888774 7 88999999997522 1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhH
Q 011581 219 LLQLVELEVRELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
..+.+...+...+....+ ....++|+||+.|.
T Consensus 308 dkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~ 339 (741)
T PRK09866 308 DADQVRALISGTLMKGCI--TPQQIFPVSSMWGY 339 (741)
T ss_pred hHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCC
Confidence 233333333434333333 23568999999998
No 261
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=1e-13 Score=131.99 Aligned_cols=133 Identities=21% Similarity=0.231 Sum_probs=92.1
Q ss_pred hHHHHHhhhhhhcc----CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee
Q 011581 69 SLIVRAARGKFERK----KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE 144 (482)
Q Consensus 69 ~~~~~~~~~~~~~~----~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~ 144 (482)
....+.++..+.+- ...++|+|+|++|+|||||++.|++...++....|+ |-.....+|+
T Consensus 148 L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT----------------TK~i~vGhfe 211 (346)
T COG1084 148 LEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT----------------TKGIHVGHFE 211 (346)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcc----------------ccceeEeeee
Confidence 33344555554432 356899999999999999999999876666665554 5566778888
Q ss_pred cCCeEEEEEeCCCchh--------hHHHHHhhcc-cCCeEEEeecCCC--CCh--HHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 145 TENRHYAHVDCPGHAD--------YVKNMITGAA-QMDGAILVVSGAD--GPM--PQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~--------~~~~~~~~~~-~~D~~ilVvda~~--g~~--~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
.+..+|.+|||||.-| --.+.+.+++ ..+++++++|++. |.. .|..-.-++-..+..| +++|+||+
T Consensus 212 ~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~ 290 (346)
T COG1084 212 RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAP-IVVVINKI 290 (346)
T ss_pred cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCC-eEEEEecc
Confidence 8999999999999422 2334455554 5788999999986 333 3332222222334555 99999999
Q ss_pred CCCChHH
Q 011581 212 DQVDDEE 218 (482)
Q Consensus 212 D~~~~~~ 218 (482)
|..+.++
T Consensus 291 D~~~~e~ 297 (346)
T COG1084 291 DIADEEK 297 (346)
T ss_pred cccchhH
Confidence 9987443
No 262
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.2e-14 Score=125.52 Aligned_cols=146 Identities=16% Similarity=0.091 Sum_probs=102.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|..++|||.|+-++... .+...-...+-++.....++.++ ..+.+|||.|+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~----------------~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD----------------SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQER 73 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc----------------cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchh
Confidence 45689999999999999999998642 11111122333444444444444 4567999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+-++++.|++++||+|.++........ .+..... .+++ +++|.||+|+........ +.-+++...+|
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R~V~~---e~ge~lA~e~G- 148 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKRQVSK---ERGEALAREYG- 148 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccccccH---HHHHHHHHHhC-
Confidence 9999999999999999999998754433322 2233332 2777 789999999976332221 24455666665
Q ss_pred CCCCccEEEcchhhhHH
Q 011581 237 PGDDVPIISGSALLALE 253 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~ 253 (482)
++|+.+||++|.|
T Consensus 149 ----~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 149 ----IKFFETSAKTNFN 161 (207)
T ss_pred ----CeEEEccccCCCC
Confidence 6899999999984
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=3.6e-14 Score=131.94 Aligned_cols=164 Identities=15% Similarity=0.254 Sum_probs=115.4
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee-eeEeecCCeEEEEEeCCCchh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA-TVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~~~~i~liDtPG~~~ 160 (482)
.+++.||.++|.+|+|||+|+|+|++....... .-|.+.+.. +....++++.++||||||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~----------------~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS----------------KVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee----------------ecccCCCchhhHHhhccccceEEecCCCccc
Confidence 678899999999999999999999853211110 011111111 111223567899999999755
Q ss_pred -------hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCC-CcEEEEEecCCCCCh---------------H
Q 011581 161 -------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV-PNMVVFLNKQDQVDD---------------E 217 (482)
Q Consensus 161 -------~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~i-p~iivviNK~D~~~~---------------~ 217 (482)
|.......+...|++++++|+.+.....+.++++.....+. .++++++|.+|+..+ +
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 77778888899999999999999888888888877766655 559999999997643 1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 218 ELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 218 ~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
+..++-.+.+.+++.. --|++.+|+..++ |+.+|+.++.+.+|.
T Consensus 180 qfi~~k~~~~~~~~q~------V~pV~~~~~r~~w------------------gl~~l~~ali~~lp~ 223 (296)
T COG3596 180 QFIEEKAEALGRLFQE------VKPVVAVSGRLPW------------------GLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHHHHHhh------cCCeEEeccccCc------------------cHHHHHHHHHHhCcc
Confidence 1222222233344432 3688888888877 899999999998874
No 264
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.5e-14 Score=121.65 Aligned_cols=144 Identities=16% Similarity=0.053 Sum_probs=101.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~ 161 (482)
..+++.++|..|+|||.|+-+++... | .......+-++.....+..+ ..++.+|||.||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~kr-------F---------~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKR-------F---------QPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccC-------c---------cccccceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 45789999999999999999997531 1 11111223334444444444 456789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
...+.++++.+-++|||.|.+........ .+|..++.. +.. ++++.||+|+....+..+ +|-+.+.++.+
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~rR~Vs~---EEGeaFA~ehg-- 142 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMV-IMLIGNKSDLEARREVSK---EEGEAFAREHG-- 142 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcE-EEEEcchhhhhccccccH---HHHHHHHHHcC--
Confidence 99999999999999999999875543332 333444444 344 677789999987544332 46777888776
Q ss_pred CCCccEEEcchhhhH
Q 011581 238 GDDVPIISGSALLAL 252 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~ 252 (482)
..+..+||+++.
T Consensus 143 ---LifmETSakt~~ 154 (216)
T KOG0098|consen 143 ---LIFMETSAKTAE 154 (216)
T ss_pred ---ceeehhhhhhhh
Confidence 467899999998
No 265
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=4.6e-14 Score=129.37 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=97.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceee-eeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN-TATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.+|+++|+.|+|||||+++|..... +.+....+... .....++.....+.+|||||+++|...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF----------------PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC----------------CcccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc
Confidence 4899999999999999999973210 00111111111 111122222345789999999888654
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHH--------HHHHHHHHHHHHHh
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEE--------LLQLVELEVRELLS 232 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~--------~~~~i~~~i~~~l~ 232 (482)
....++.+|++++++|.++....+.. ..+..+... .+| +++|.||+|+.+... ..... ++...+.+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVPI-QQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCCH-HHHHHHHH
Confidence 44556789999999998765433322 123333322 567 899999999854210 01001 12334444
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++. .+++.+||++|. |++++++.+.+.+
T Consensus 144 ~~~~----~~~~e~Sa~~~~------------------~v~~~f~~l~~~~ 172 (187)
T cd04129 144 EIGA----KKYMECSALTGE------------------GVDDVFEAATRAA 172 (187)
T ss_pred HhCC----cEEEEccCCCCC------------------CHHHHHHHHHHHH
Confidence 4442 579999999998 8899999987643
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=9.6e-14 Score=128.25 Aligned_cols=166 Identities=15% Similarity=0.195 Sum_probs=107.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY---- 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~---- 161 (482)
++|+++|.+|+|||||+|+|++...... .....+.|.......+++.+..+++|||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~--------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFES--------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccc--------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 4899999999999999999986521100 0113456776666667778899999999996543
Q ss_pred ---HHHHHh----hcccCCeEEEeecCCCCChHHHHHHHHHHHHc-C---CCcEEEEEecCCCCChHH---HHHHHHHHH
Q 011581 162 ---VKNMIT----GAAQMDGAILVVSGADGPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVDDEE---LLQLVELEV 227 (482)
Q Consensus 162 ---~~~~~~----~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-~---ip~iivviNK~D~~~~~~---~~~~i~~~i 227 (482)
...+.. ....+|++|+|+|+.. .....++.++.+... | .+++++++|+.|.....+ ........+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 222222 2346899999999988 777777777777653 3 245889999999876432 222222456
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+.+++.++- .++..+...- ......++.+|++.+++.++
T Consensus 146 ~~l~~~c~~-----r~~~f~~~~~-------------~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 146 KRLLEKCGG-----RYVAFNNKAK-------------GEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred HHHHHHhCC-----eEEEEeCCCC-------------cchhHHHHHHHHHHHHHHHH
Confidence 677766542 2222222110 00112267889999888765
No 267
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.54 E-value=6.6e-14 Score=124.71 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=93.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|+.|+|||||+.+++... +.. ...+ ..+ .. .....++.....+.+|||+|.+++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-------f~~----~~~~---~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~~---- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-------YVQ----LESP---EGG-RF-KKEVLVDGQSHLLLIRDEGGAPDA---- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-------CCC----CCCC---Ccc-ce-EEEEEECCEEEEEEEEECCCCCch----
Confidence 479999999999999999987431 000 0000 001 00 111222222355789999999753
Q ss_pred HhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc----CCCcEEEEEecCCCCC--hHHHHHHHHHHHHHHHhhcCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV----GVPNMVVFLNKQDQVD--DEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~----~ip~iivviNK~D~~~--~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.....+|++++|+|.++....+. ...+..+... ++| +++|.||+|+.. ..+..+ ++..++.++.
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~~---~~~~~~~~~~---- 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVIDD---ARARQLCADM---- 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccCH---HHHHHHHHHh----
Confidence 23467999999999998666555 3333444332 456 899999999843 111111 1333444332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
..++++++||++|. |++++++.+.+
T Consensus 132 ~~~~~~e~SAk~~~------------------~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYYETCATYGL------------------NVERVFQEAAQ 156 (158)
T ss_pred CCCcEEEEecCCCC------------------CHHHHHHHHHh
Confidence 13689999999998 88999988764
No 268
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.54 E-value=3.7e-14 Score=116.66 Aligned_cols=88 Identities=25% Similarity=0.323 Sum_probs=77.4
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc------ccccccCCCCEEEEEEEeCceEee
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELIMPVAC 457 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~~~~g~~~~v~~~~~~p~~~ 457 (482)
.+..|+|+|+||+. .||.+||++.+|+|+.+++|+|.+|.++.| .++.++..||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~------~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDE------EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred ccceeeEEEEEecC------cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEe
Confidence 46789999999984 389999999999999999999999976544 256789999999999999999999
Q ss_pred ccC------CeEEE--eeCCcEEEEEEE
Q 011581 458 EQG------MRFAI--REGGKTVGAGVI 477 (482)
Q Consensus 458 ~~~------~rfil--r~~~~tvg~G~v 477 (482)
+.+ |||+| |++|.|+|+|+|
T Consensus 76 d~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred cchhhCCCcceEEEEECCCCcEEEEEeC
Confidence 974 89999 455999999986
No 269
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=1.5e-13 Score=127.61 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=82.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee--cCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPG~~~~~~ 163 (482)
.+|+++|+.|+|||||+++|.... +. .. ...++.+.....+. ..+..+.+||||||.+|..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~-------~~-----~t-----~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~ 63 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGK-------YR-----ST-----VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRD 63 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC-------CC-----Cc-----cCcEeecceEEEeecCCCCceEEEEECCCCHHHHH
Confidence 379999999999999999997531 00 00 00001111111121 2357799999999999998
Q ss_pred HHHhhcccC-CeEEEeecCCCCC--hHHHHHHHHHH----HH--cCCCcEEEEEecCCCCCh---HHHHHHHHHHHHHHH
Q 011581 164 NMITGAAQM-DGAILVVSGADGP--MPQTKEHILLA----KQ--VGVPNMVVFLNKQDQVDD---EELLQLVELEVRELL 231 (482)
Q Consensus 164 ~~~~~~~~~-D~~ilVvda~~g~--~~~t~e~l~~~----~~--~~ip~iivviNK~D~~~~---~~~~~~i~~~i~~~l 231 (482)
.....++.+ +++|+|+|+.+.. ...+.+.+..+ .. .++| +++++||+|+... +...+.+++++..+.
T Consensus 64 ~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~a~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 64 KLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFTAKPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcccCCHHHHHHHHHHHHHHHH
Confidence 888888888 9999999999862 23334443222 11 3677 8899999998752 223444444554443
No 270
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.53 E-value=1.1e-13 Score=123.48 Aligned_cols=152 Identities=22% Similarity=0.231 Sum_probs=100.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeee--eEeecCCeEEEEEeCCCchhhHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT--VEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
||+++|+.++|||||+++|.+.. +..+....+..+... ..++.....+.|||++|+++|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE----------------FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS----------------TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc----------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999999999999997531 111111112123323 333333456789999999999877
Q ss_pred HHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
....+..+|++|+|+|.++...-.. ...+..+... ..| ++++.||.|+.+..+... ++.+++.+.++
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~-iivvg~K~D~~~~~~v~~---~~~~~~~~~~~----- 135 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIP-IIVVGNKSDLSDEREVSV---EEAQEFAKELG----- 135 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSE-EEEEEETTTGGGGSSSCH---HHHHHHHHHTT-----
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-ceeeeccccccccccchh---hHHHHHHHHhC-----
Confidence 7777889999999999987443222 2222333222 245 899999999876222211 24455555543
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.+++.+|++++. |+.+++..+.+
T Consensus 136 ~~~~e~Sa~~~~------------------~v~~~f~~~i~ 158 (162)
T PF00071_consen 136 VPYFEVSAKNGE------------------NVKEIFQELIR 158 (162)
T ss_dssp SEEEEEBTTTTT------------------THHHHHHHHHH
T ss_pred CEEEEEECCCCC------------------CHHHHHHHHHH
Confidence 789999999987 78888777665
No 271
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-13 Score=115.88 Aligned_cols=148 Identities=25% Similarity=0.180 Sum_probs=99.0
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.+..++|+++|+.|+|||.|+.+++..+-..|.+. .-|+..-......+.+..++.||||+|+++|
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqga--------------tigvdfmiktvev~gekiklqiwdtagqerf 69 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGA--------------TIGVDFMIKTVEVNGEKIKLQIWDTAGQERF 69 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCc--------------eeeeeEEEEEEEECCeEEEEEEeeccchHHH
Confidence 45678999999999999999999987543333211 1122222233344455667889999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
...+.++++.+++.|||.|.+..+... .-+.++.... ..+- -|+|.||+|+.+..+.-+.+-+++.+.-
T Consensus 70 rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvl-kilvgnk~d~~drrevp~qigeefs~~q------ 142 (213)
T KOG0095|consen 70 RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVL-KILVGNKIDLADRREVPQQIGEEFSEAQ------ 142 (213)
T ss_pred HHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceE-EEeeccccchhhhhhhhHHHHHHHHHhh------
Confidence 999999999999999999998754321 1222222222 2332 3678999999876555554444443321
Q ss_pred CCCccEEEcchhhhH
Q 011581 238 GDDVPIISGSALLAL 252 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~ 252 (482)
..-|+.+||+...
T Consensus 143 --dmyfletsakea~ 155 (213)
T KOG0095|consen 143 --DMYFLETSAKEAD 155 (213)
T ss_pred --hhhhhhhcccchh
Confidence 1346789999887
No 272
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.51 E-value=2.4e-12 Score=124.85 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=98.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+|+|++........ ..+.........+++......++.++ ..+++|||||+.++
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~------~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDY------PPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccC------CCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 35799999999999999999998642211110 00001112233334444444555555 46899999996544
Q ss_pred HH---------------------HHHh-----hc--ccCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 162 VK---------------------NMIT-----GA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 162 ~~---------------------~~~~-----~~--~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
.. +... .+ ..+|++++++++.. ++...+.+.++.+.. ++| +|+|+||+|
T Consensus 77 ~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D 154 (276)
T cd01850 77 INNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKAD 154 (276)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCC
Confidence 21 1111 11 14789999999874 777888888888875 788 889999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcch
Q 011581 213 QVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSA 248 (482)
Q Consensus 213 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa 248 (482)
+...++.. ..++.+.+.++..+ +++++...
T Consensus 155 ~l~~~e~~-~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 155 TLTPEELK-EFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred cCCHHHHH-HHHHHHHHHHHHcC-----CceECCCC
Confidence 98855543 45557888887765 55665443
No 273
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=116.77 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=100.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcC--CceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERAR--GITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..++|.++|..|+|||+|+-+++.. .+..+... |+........++....++.||||+|+++|
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~----------------~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErF 73 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSN----------------TFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERF 73 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhc----------------ccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhh
Confidence 3589999999999999999998742 22223332 33333344455556678899999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHH-HHHc----CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILL-AKQV----GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~-~~~~----~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
...+-++++.+.++|+|.|.+........++|.. +..+ ++- .++|.||+|..+..... .++-..+.+++.
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R~V~---reEG~kfAr~h~- 148 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDII-KMLVGNKIDKESERVVD---REEGLKFARKHR- 148 (209)
T ss_pred hccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHh-Hhhhcccccchhccccc---HHHHHHHHHhhC-
Confidence 9999999999999999999998666555555432 2222 233 24789999986422211 134556666654
Q ss_pred CCCCccEEEcchhhhH
Q 011581 237 PGDDVPIISGSALLAL 252 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~ 252 (482)
.-|+..||++.+
T Consensus 149 ----~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 149 ----CLFIECSAKTRE 160 (209)
T ss_pred ----cEEEEcchhhhc
Confidence 568999999987
No 274
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=4.2e-13 Score=114.55 Aligned_cols=145 Identities=23% Similarity=0.224 Sum_probs=102.2
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
+...++|.++|.-||||||++++|++... .... .|........+.+++.+++||..|+..+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~---------------~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~l 73 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT---------------DTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTL 73 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc---------------cccC----CccceeeEEEEecceEEEEEEcCCcchh
Confidence 33478999999999999999999986421 1111 1333334445678899999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHH----HHcCCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHhhc
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA----KQVGVPNMVVFLNKQDQVDD--EELLQLVELEVRELLSSY 234 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~----~~~~ip~iivviNK~D~~~~--~~~~~~i~~~i~~~l~~~ 234 (482)
..-+..++..+|+.|+|||.++... .+++.++..+ +..|.| ++++.||.|+... .+-...+ .++.++++.
T Consensus 74 r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l~~~~i~~~-~~L~~l~ks- 150 (185)
T KOG0073|consen 74 RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGALSLEEISKA-LDLEELAKS- 150 (185)
T ss_pred HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccccCHHHHHHh-hCHHHhccc-
Confidence 9999999999999999999987443 3334444333 334777 8889999999852 1111111 244555443
Q ss_pred CCCCCCccEEEcchhhhH
Q 011581 235 EFPGDDVPIISGSALLAL 252 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~ 252 (482)
..++++-+||.+|+
T Consensus 151 ----~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 151 ----HHWRLVKCSAVTGE 164 (185)
T ss_pred ----cCceEEEEeccccc
Confidence 35789999999997
No 275
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.3e-13 Score=137.10 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=115.4
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
++-+..++|+++|.+|+|||||+|+|+.. |..-.....|.|.|.-...++.++..+.|+||+|..
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~---------------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiR 327 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSRE---------------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIR 327 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcC---------------CceEeCCCCCcchhhheeEeecCCeEEEEEeccccc
Confidence 33345689999999999999999999865 444445678999999999999999999999999976
Q ss_pred hh---------HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCC-----------CcEEEEEecCCCCCh-HH
Q 011581 160 DY---------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV-----------PNMVVFLNKQDQVDD-EE 218 (482)
Q Consensus 160 ~~---------~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~i-----------p~iivviNK~D~~~~-~~ 218 (482)
+- +......+..+|++++|+|+..+.+.+.....+.+...+. .++++++||.|+..+ .+
T Consensus 328 e~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~ 407 (531)
T KOG1191|consen 328 EESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE 407 (531)
T ss_pred cccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc
Confidence 51 3334455678999999999988888777776666655422 447888999998764 11
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccEE-EcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 219 LLQLVELEVRELLSSYEFPGDDVPII-SGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 219 ~~~~i~~~i~~~l~~~~~~~~~~~~i-~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
... ....+....+. ...+++ .+|+.+++ |+..|.++|.+.
T Consensus 408 ~~~----~~~~~~~~~~~--~~~~i~~~vs~~tke------------------g~~~L~~all~~ 448 (531)
T KOG1191|consen 408 MTK----IPVVYPSAEGR--SVFPIVVEVSCTTKE------------------GCERLSTALLNI 448 (531)
T ss_pred ccC----CceeccccccC--cccceEEEeeechhh------------------hHHHHHHHHHHH
Confidence 111 11112222121 234444 48998887 777777766553
No 276
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=3e-13 Score=124.65 Aligned_cols=158 Identities=15% Similarity=0.063 Sum_probs=95.9
Q ss_pred ceEEEEEecCCccHHHHHHH-HHHhHHhcCCCCCcccccccCChhhhcCCcee---eee--e--------eEeecCCeEE
Q 011581 85 HVNIGTIGHVDHGKTTLTAA-LTMALASLGNSAPKKYDEIDAAPEERARGITI---NTA--T--------VEYETENRHY 150 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~-L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti---~~~--~--------~~~~~~~~~i 150 (482)
..+|+++|..++|||+|+.+ +.+..-.. ..+..+... |+ +.. . ..++.....+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~-----------~~f~~~~~p--Ti~~~~~~~~~~~~~~~~~~~~~~~~v~l 68 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQ-----------YQLLATHVP--TVWAIDQYRVCQEVLERSRDVVDGVSVSL 68 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCccc-----------ccCccccCC--ceecccceeEEeeeccccceeeCCEEEEE
Confidence 36899999999999999964 43210000 000111111 22 100 0 0123334678
Q ss_pred EEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHH-H-HHHHHHH--cCCCcEEEEEecCCCCChH--H------
Q 011581 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK-E-HILLAKQ--VGVPNMVVFLNKQDQVDDE--E------ 218 (482)
Q Consensus 151 ~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e-~l~~~~~--~~ip~iivviNK~D~~~~~--~------ 218 (482)
.||||+|++++. ....++.+|++|+|+|.++....+.. . .+..+.. .++| +++|.||+|+.+.. +
T Consensus 69 ~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhccc
Confidence 899999997643 23457899999999999876543332 2 2333333 2567 88999999986410 0
Q ss_pred --------HHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 219 --------LLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 219 --------~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
....-.++.+++.++++ ++++.+||++|. |+.++++.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~------------------~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQF------------------GVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCC------------------CHHHHHHHHHH
Confidence 00001224555665554 589999999998 88999988764
No 277
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=2.6e-13 Score=128.03 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=98.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe-EEEEEeCCCchh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR-HYAHVDCPGHAD--- 160 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPG~~~--- 160 (482)
.-.|+++|-+|+|||||+++|......++...|+ |+........+++. .+++-|.||..+
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFT----------------TL~P~iG~v~yddf~q~tVADiPGiI~GAh 259 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT----------------TLRPHIGTVNYDDFSQITVADIPGIIEGAH 259 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCccccccee----------------eeccccceeeccccceeEeccCcccccccc
Confidence 3469999999999999999999876666655443 55444444444443 399999999321
Q ss_pred ----hHHHHHhhcccCCeEEEeecCCCC---ChHHHHHH-HHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 161 ----YVKNMITGAAQMDGAILVVSGADG---PMPQTKEH-ILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 161 ----~~~~~~~~~~~~D~~ilVvda~~g---~~~~t~e~-l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
.-.+.++-+..++..++|||.+.+ ...+..+. +..+.. +.-+..++|.||+|+.+.++- .+.
T Consensus 260 ~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~------~l~ 333 (366)
T KOG1489|consen 260 MNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN------LLS 333 (366)
T ss_pred ccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH------HHH
Confidence 123344555679999999999987 22222222 222222 222336789999999743221 123
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
++.+.+. +..++|+||+.++ |+.+|++.|..
T Consensus 334 ~L~~~lq----~~~V~pvsA~~~e------------------gl~~ll~~lr~ 364 (366)
T KOG1489|consen 334 SLAKRLQ----NPHVVPVSAKSGE------------------GLEELLNGLRE 364 (366)
T ss_pred HHHHHcC----CCcEEEeeecccc------------------chHHHHHHHhh
Confidence 3333332 2358999999998 77888887754
No 278
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.8e-13 Score=122.04 Aligned_cols=146 Identities=18% Similarity=0.110 Sum_probs=101.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|.+++|||-|+.+++. |.+..+....+-++........++ .+..||||+|+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftr----------------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTR----------------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQER 75 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcc----------------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhh
Confidence 4568899999999999999999964 333333444444454444444444 4568999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|..-+-++++.+-+|+||.|.+.....+..+ .|..|+.. +++ +++|.||+||....... .++-+.+.+..
T Consensus 76 yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL~~lraV~---te~~k~~Ae~~-- 149 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIV-IMLVGNKSDLNHLRAVP---TEDGKAFAEKE-- 149 (222)
T ss_pred hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeE-EEEeecchhhhhccccc---hhhhHhHHHhc--
Confidence 9998989999999999999998755544333 33444443 566 78899999997622211 12344444443
Q ss_pred CCCCccEEEcchhhhHH
Q 011581 237 PGDDVPIISGSALLALE 253 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~ 253 (482)
...|+.+||+.+.|
T Consensus 150 ---~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 150 ---GLFFLETSALDATN 163 (222)
T ss_pred ---CceEEEeccccccc
Confidence 36799999999874
No 279
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=8.1e-13 Score=123.93 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=91.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe--ecCCeEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY--ETENRHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~~i~liDtPG~~ 159 (482)
....++|+++|+.|+|||||+++++... +..+....+..+.....+ +.....+.+|||||+.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGE----------------FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCC----------------CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 3456899999999999999998876321 000111111122222222 3345678899999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHH--HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAK--QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~--~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
+|.......+..+|++++|+|.++....+....+ ..+. ..++| ++++.||+|+.+..... +...+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~~~-----~~~~~~~~~-- 141 (215)
T PTZ00132 70 KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQVKA-----RQITFHRKK-- 141 (215)
T ss_pred hhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccccCCH-----HHHHHHHHc--
Confidence 9977777777899999999999876654443322 2221 12566 78899999986422111 111233332
Q ss_pred CCCCccEEEcchhhhH
Q 011581 237 PGDDVPIISGSALLAL 252 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~ 252 (482)
.+.++++|+++|.
T Consensus 142 ---~~~~~e~Sa~~~~ 154 (215)
T PTZ00132 142 ---NLQYYDISAKSNY 154 (215)
T ss_pred ---CCEEEEEeCCCCC
Confidence 3578999999887
No 280
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.43 E-value=5.9e-13 Score=111.35 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=109.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
....+.++|--++|||||+|.+.... -.+..+.|+-.....+......+.+||.||+..|..
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~------------------~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQ------------------YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeecc------------------chhhhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 35689999999999999999875310 011222344445556666778899999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHH----HHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPM-PQTKEHILLA----KQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+.++.+.+|++++||||.+... ...++.+..+ ...++| ++|..||.|+.++-... ++-+-+.-..+..
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~~-----~li~rmgL~sitd 154 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSKI-----ALIERMGLSSITD 154 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccHH-----HHHHHhCcccccc
Confidence 99999999999999999998332 2333333322 334888 88999999998742221 1222222222334
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..+..+.+|+++.. +++.++++|.++
T Consensus 155 REvcC~siScke~~------------------Nid~~~~Wli~h 180 (186)
T KOG0075|consen 155 REVCCFSISCKEKV------------------NIDITLDWLIEH 180 (186)
T ss_pred ceEEEEEEEEcCCc------------------cHHHHHHHHHHH
Confidence 57888999999877 678888888774
No 281
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.42 E-value=3.5e-12 Score=117.93 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=77.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcC--CceeeeeeeEee-----cCCeEEEEEeCCCc
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERAR--GITINTATVEYE-----TENRHYAHVDCPGH 158 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~Ti~~~~~~~~-----~~~~~i~liDtPG~ 158 (482)
++|+++|..++|||||++++++.. +..+... |.++......+. .....+.||||+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~----------------f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~ 64 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ----------------VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGS 64 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCc
Confidence 479999999999999999997531 1111111 222222222222 12356889999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH----------------------cCCCcEEEEEecCCCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ----------------------VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~----------------------~~ip~iivviNK~D~~~ 215 (482)
++|.......++.+|++|+|+|.++....+....| ..+.. .++| +++|.||+|+.+
T Consensus 65 e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~ 143 (202)
T cd04102 65 ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIP 143 (202)
T ss_pred hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchh
Confidence 99988888888999999999999987554443333 22221 2567 899999999975
Q ss_pred h
Q 011581 216 D 216 (482)
Q Consensus 216 ~ 216 (482)
.
T Consensus 144 ~ 144 (202)
T cd04102 144 E 144 (202)
T ss_pred h
Confidence 3
No 282
>PRK13768 GTPase; Provisional
Probab=99.40 E-value=4.3e-12 Score=121.62 Aligned_cols=178 Identities=25% Similarity=0.305 Sum_probs=105.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcc-----cccc---------cCChhhh---cCCceeeeee--------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKK-----YDEI---------DAAPEER---ARGITINTAT-------- 140 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~-----~~~~---------d~~~~e~---~~g~Ti~~~~-------- 140 (482)
..+++.|..|+||||++..|.......|.....- .... +....+. +.+..-+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 4688999999999999999987766555421100 0000 0000000 1011000000
Q ss_pred -------eEeecCCeEEEEEeCCCchhhH------HHHHhhccc--CCeEEEeecCCCCChHHHHHHHHHHH-----HcC
Q 011581 141 -------VEYETENRHYAHVDCPGHADYV------KNMITGAAQ--MDGAILVVSGADGPMPQTKEHILLAK-----QVG 200 (482)
Q Consensus 141 -------~~~~~~~~~i~liDtPG~~~~~------~~~~~~~~~--~D~~ilVvda~~g~~~~t~e~l~~~~-----~~~ 200 (482)
..+...+..+.+|||||+.++. +.....+.. ++++++|+|+..+..+.+.+...++. ..+
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~ 162 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG 162 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 0011223479999999976643 223333333 89999999998877766655544433 568
Q ss_pred CCcEEEEEecCCCCChHHHHH---HHH--------------------HHHHHHHhhcCCCCCCccEEEcchhhhHHHhhc
Q 011581 201 VPNMVVFLNKQDQVDDEELLQ---LVE--------------------LEVRELLSSYEFPGDDVPIISGSALLALEALMA 257 (482)
Q Consensus 201 ip~iivviNK~D~~~~~~~~~---~i~--------------------~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~ 257 (482)
+| +++|+||+|+.+..+..+ .+. .++.+.++.++ ...+++++|++++.
T Consensus 163 ~~-~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~----- 233 (253)
T PRK13768 163 LP-QIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGE----- 233 (253)
T ss_pred CC-EEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCc-----
Confidence 88 788999999987543311 111 01112233333 23588999999988
Q ss_pred CCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 258 NPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 258 ~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
|+++|+++|.+.++.
T Consensus 234 -------------gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 234 -------------GFDELYAAIQEVFCG 248 (253)
T ss_pred -------------CHHHHHHHHHHHcCC
Confidence 899999999988753
No 283
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.40 E-value=1.8e-12 Score=116.14 Aligned_cols=125 Identities=21% Similarity=0.335 Sum_probs=74.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee---cCCeEEEEEeCCCchhhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPGHADYV 162 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~---~~~~~i~liDtPG~~~~~ 162 (482)
..|.++|+.|+|||+|+.+|..... .. .-.++ .....+. ..+..+.+||+|||.+..
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~------~~-------------T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr 63 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT------VP-------------TVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLR 63 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS----------------------B---S-SEEEECCGSSTCGTCECEEEETT-HCCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc------CC-------------eeccc-cCCceEEeecCCCCEEEEEECCCcHHHH
Confidence 5799999999999999999986410 00 00011 1111121 245679999999999987
Q ss_pred HHHHhh---cccCCeEEEeecCCCCC--hHHHHHHHHHHHH------cCCCcEEEEEecCCCCCh---HHHHHHHHHHHH
Q 011581 163 KNMITG---AAQMDGAILVVSGADGP--MPQTKEHILLAKQ------VGVPNMVVFLNKQDQVDD---EELLQLVELEVR 228 (482)
Q Consensus 163 ~~~~~~---~~~~D~~ilVvda~~g~--~~~t~e~l~~~~~------~~ip~iivviNK~D~~~~---~~~~~~i~~~i~ 228 (482)
...... +..+.++|+|||++.-. ...+-|+|..+.. .++| ++|+.||.|+... ......+++|+.
T Consensus 64 ~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~p-iLIacNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 64 SKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPP-ILIACNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp HHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--E-EEEEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred HHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCC-EEEEEeCccccccCCHHHHHHHHHHHHH
Confidence 776665 77899999999997511 1233333322211 2445 9999999999763 234444555555
Q ss_pred HHH
Q 011581 229 ELL 231 (482)
Q Consensus 229 ~~l 231 (482)
.+.
T Consensus 143 ~lr 145 (181)
T PF09439_consen 143 KLR 145 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 284
>PLN00023 GTP-binding protein; Provisional
Probab=99.39 E-value=4.4e-12 Score=123.25 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=88.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-------------CCeE
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-------------ENRH 149 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-------------~~~~ 149 (482)
...++|+++|+.++|||||+++|.+..- . .......|.+.......+.. ....
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F-------~-------~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~ 84 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS-------I-------ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFF 84 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc-------c-------cccCCceeeeEEEEEEEECCcccccccccccCCceEE
Confidence 3458999999999999999999975310 0 00011122233222333321 2356
Q ss_pred EEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---------------CCCcEEEEEecCCC
Q 011581 150 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---------------GVPNMVVFLNKQDQ 213 (482)
Q Consensus 150 i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---------------~ip~iivviNK~D~ 213 (482)
+.||||+|+++|.......++.+|++|+|+|.++...... ...+..+... ++| +++|.||+|+
T Consensus 85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL 163 (334)
T PLN00023 85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADI 163 (334)
T ss_pred EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECccc
Confidence 8899999999999888888999999999999988443322 2233333322 356 8999999999
Q ss_pred CChHH-HH--HHHHHHHHHHHhhcCC
Q 011581 214 VDDEE-LL--QLVELEVRELLSSYEF 236 (482)
Q Consensus 214 ~~~~~-~~--~~i~~~i~~~l~~~~~ 236 (482)
...+. +. ....++.+++.++.++
T Consensus 164 ~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 164 APKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccccHHHHHHHHHHcCC
Confidence 75321 10 1123466777777665
No 285
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.39 E-value=2.6e-12 Score=121.88 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=69.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
+...-+|+++|.+++|||||++.|++...+.+...|. |.......+++++-.|.++|+||...-
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FT----------------Tl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT----------------TLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCce----------------ecccccceEeecCceEEEEcCcccccC
Confidence 3345789999999999999999999876666655554 566666778889999999999994221
Q ss_pred -------HHHHHhhcccCCeEEEeecCCCC
Q 011581 162 -------VKNMITGAAQMDGAILVVSGADG 184 (482)
Q Consensus 162 -------~~~~~~~~~~~D~~ilVvda~~g 184 (482)
-++.++.++.||++++|+|+...
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 35577788999999999999853
No 286
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.39 E-value=4.1e-12 Score=102.33 Aligned_cols=90 Identities=27% Similarity=0.382 Sum_probs=79.6
Q ss_pred CCCCeeEEEEeEEeeC--------CCceEEEEEEEeeeeecCCEEEEecC-------C---ccceeEEEEEeecccccce
Q 011581 290 TDLPFLLAVEDVFSIT--------GRGTVATGRVERGTIKVGETVDLVGL-------K---ETRNFTVTGVEMFQKTLDE 351 (482)
Q Consensus 290 ~~~~~~~~I~~v~~v~--------g~G~v~~G~v~sG~l~~g~~v~i~p~-------~---~~~~~~V~~i~~~~~~v~~ 351 (482)
.++|++|+|.++|.++ .+|.|+.|+|.+|.|++||++.|.|. + .....+|.+|+..++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4679999999999998 89999999999999999999999964 1 1236789999999999999
Q ss_pred eecCCeEEE---EEccccccCcccCeEEeCC
Q 011581 352 AMAGDNVGL---LLRGVQKADIQRGMVLAKP 379 (482)
Q Consensus 352 a~aG~~v~l---~l~~~~~~~i~~G~vl~~~ 379 (482)
|.||+.+++ ....+.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 5667888899999999875
No 287
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.38 E-value=7.8e-13 Score=111.66 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=73.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
||+|+|+.|+|||||+++|.+.... +........+.++.............+.+||++|+..+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 6999999999999999999865221 0011112233344444444444555689999999988876544
Q ss_pred hhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH-----cCCCcEEEEEecCC
Q 011581 167 TGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ-----VGVPNMVVFLNKQD 212 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~-----~~ip~iivviNK~D 212 (482)
..+..+|++|+|+|.++... .+..+.+..+.. .++| +++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 55888999999999997543 222333223322 2477 899999998
No 288
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=3.7e-12 Score=106.58 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=97.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
..++.++|+..+|||+++-+.++. ++.. .--+.-|+........-.....++.+|||.|++.|...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~dd-------SFt~-------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrti 86 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADD-------SFTS-------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI 86 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcc-------cccc-------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHH
Confidence 458999999999999999887642 1110 00112233332222221223356889999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHH-HHHH---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHI-LLAK---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
+-.+++++++.||+.|.++.......+.+ -+.+ ..+.| +|+|.||||+.+..-... +..+.+..++|+
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~eRvis~---e~g~~l~~~LGf---- 158 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSERVISH---ERGRQLADQLGF---- 158 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCce-EEEEecccCCccceeeeH---HHHHHHHHHhCh----
Confidence 99999999999999999876554443333 2222 24677 899999999976322211 245667777775
Q ss_pred ccEEEcchhhhH
Q 011581 241 VPIISGSALLAL 252 (482)
Q Consensus 241 ~~~i~~Sa~~g~ 252 (482)
.++.+||+.+.
T Consensus 159 -efFEtSaK~Ni 169 (193)
T KOG0093|consen 159 -EFFETSAKENI 169 (193)
T ss_pred -HHhhhcccccc
Confidence 68999999887
No 289
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=116.37 Aligned_cols=116 Identities=22% Similarity=0.210 Sum_probs=81.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
..+|+++|..|+|||||+++|.+... ..+...++............ ...+.+|||+|+++|.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEF----------------PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcC----------------cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 38999999999999999999986422 11222222222222222222 4568899999999999
Q ss_pred HHHHhhcccCCeEEEeecCCC-CCh-HHHHHHHHHHHHc---CCCcEEEEEecCCCCChH
Q 011581 163 KNMITGAAQMDGAILVVSGAD-GPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDE 217 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~-g~~-~~t~e~l~~~~~~---~ip~iivviNK~D~~~~~ 217 (482)
..+..+...++++++++|... ... ..+.+....+... +.| ++++.||+|+....
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 999999999999999999986 333 3334444455544 367 89999999998754
No 290
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.36 E-value=9.2e-12 Score=119.20 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=98.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee-cCCeEEEEEeCCCc------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGH------ 158 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDtPG~------ 158 (482)
--|+++|-+|+|||||+++++.....++...|+ |+........ .....+++-|.||.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFT----------------TL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFT----------------TLVPNLGVVRVDGGESFVVADIPGLIEGASE 223 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccc----------------cccCcccEEEecCCCcEEEecCccccccccc
Confidence 359999999999999999999887777766664 4433332232 35667999999993
Q ss_pred -----hhhHHHHHhhcccCCeEEEeecCCCCC----hHHHHHHHHHHHHc-----CCCcEEEEEecCCCCChHHHHHHHH
Q 011581 159 -----ADYVKNMITGAAQMDGAILVVSGADGP----MPQTKEHILLAKQV-----GVPNMVVFLNKQDQVDDEELLQLVE 224 (482)
Q Consensus 159 -----~~~~~~~~~~~~~~D~~ilVvda~~g~----~~~t~e~l~~~~~~-----~ip~iivviNK~D~~~~~~~~~~i~ 224 (482)
.+|++. +..+-+.+.|||.+... ...-......+..+ +.| .+||+||||++.+++..+.++
T Consensus 224 G~GLG~~FLrH----IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~-~ivv~NKiD~~~~~e~~~~~~ 298 (369)
T COG0536 224 GVGLGLRFLRH----IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP-RIVVLNKIDLPLDEEELEELK 298 (369)
T ss_pred CCCccHHHHHH----HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCc-eEEEEeccCCCcCHHHHHHHH
Confidence 344444 45588999999998533 22222222333332 556 678999999777666655444
Q ss_pred HHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 225 LEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+.+.+ ..++ .+++++||.+++ |+++|++.+.+.+
T Consensus 299 ~~l~~---~~~~----~~~~~ISa~t~~------------------g~~~L~~~~~~~l 332 (369)
T COG0536 299 KALAE---ALGW----EVFYLISALTRE------------------GLDELLRALAELL 332 (369)
T ss_pred HHHHH---hcCC----Ccceeeehhccc------------------CHHHHHHHHHHHH
Confidence 33333 2232 223339999987 6666666665544
No 291
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.9e-11 Score=102.95 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=98.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeee--EeecCCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATV--EYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~--~~~~~~~~i~liDtPG~~~ 160 (482)
...+++.++|+.|.|||.|+.++....-+ ....+.+-++.... ....+..++.||||+|+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfk----------------DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr 70 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFK----------------DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER 70 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhc----------------ccccceeeeeecceeeeecCcEEEEEEeecccHHH
Confidence 34679999999999999999999854211 11122233333333 3333455778999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHcCCCc--EEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQVGVPN--MVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~~ip~--iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
|..-+..+++.+-+++||.|++....... ...+..++.+--|. +|++.||-|+....+..- .+..++...
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf---lEAs~FaqE---- 143 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF---LEASRFAQE---- 143 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH---HHHHhhhcc----
Confidence 99999999999999999999987544333 33334455553333 556679999976443211 133344332
Q ss_pred CCCccEEEcchhhhHH
Q 011581 238 GDDVPIISGSALLALE 253 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~ 253 (482)
+.+.+..+|+++|.|
T Consensus 144 -nel~flETSa~TGeN 158 (214)
T KOG0086|consen 144 -NELMFLETSALTGEN 158 (214)
T ss_pred -cceeeeeeccccccc
Confidence 346789999999985
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=1.4e-11 Score=121.33 Aligned_cols=174 Identities=22% Similarity=0.214 Sum_probs=101.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCc----------ccccc-cCChhh---hcCCceeee-ee------
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPK----------KYDEI-DAAPEE---RARGITINT-AT------ 140 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~----------~~~~~-d~~~~e---~~~g~Ti~~-~~------ 140 (482)
......|++.|.+|+|||||++.|.......|..... ....+ |....+ ...+.-+.. ..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 4567889999999999999999998776654431110 00000 111111 111111111 00
Q ss_pred ---------eEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHH--HHHHHHHcCCCcEEEEEe
Q 011581 141 ---------VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQVGVPNMVVFLN 209 (482)
Q Consensus 141 ---------~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e--~l~~~~~~~ip~iivviN 209 (482)
..++..+..+.||||+|...-... ....+|.+++|++...|..-|... .++++ -++|+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a-------DIiVVN 202 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELA-------DLIVIN 202 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhh-------heEEee
Confidence 012335788999999997632211 355799999998755444333311 22222 267899
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcC--CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 210 KQDQVDDEELLQLVELEVRELLSSYE--FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 210 K~D~~~~~~~~~~i~~~i~~~l~~~~--~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
|+|+.+.... +....+++..+.... .+....|++++||.+|. |+++|++.|.++++
T Consensus 203 KaDl~~~~~a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~------------------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 203 KADGDNKTAA-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE------------------GIDEIWQAIEDHRA 260 (332)
T ss_pred hhcccchhHH-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCC------------------CHHHHHHHHHHHHH
Confidence 9999874432 223335665554322 11123689999999998 88888888877653
No 293
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.34 E-value=1e-10 Score=111.44 Aligned_cols=121 Identities=14% Similarity=0.091 Sum_probs=77.9
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
......++|+++|.+|+|||||+|+|++.... ......+.|..........++..+++|||||..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~---------------~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~ 90 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKA---------------ATSAFQSETLRVREVSGTVDGFKLNIIDTPGLL 90 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCc---------------ccCCCCCceEEEEEEEEEECCeEEEEEECCCcC
Confidence 34567799999999999999999999975211 111112335555555556678899999999976
Q ss_pred hhH------HH----HHhhc--ccCCeEEEeecCCC-CChHHHHHHHHHHHH-cCC---CcEEEEEecCCCCC
Q 011581 160 DYV------KN----MITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQ-VGV---PNMVVFLNKQDQVD 215 (482)
Q Consensus 160 ~~~------~~----~~~~~--~~~D~~ilVvda~~-g~~~~t~e~l~~~~~-~~i---p~iivviNK~D~~~ 215 (482)
+.. .. +...+ ...|++++|...+. ......+..++.+.. +|. .++++|+||+|...
T Consensus 91 ~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 91 ESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 551 11 11222 25788888865553 334444555554443 342 35899999999865
No 294
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=103.95 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=98.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee--eeeEeecCCeEEEEEeCCCchhhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
.+.+|+|.+++|||+|+-++... .+...-...+-++. ....++.+..++.||||+|++.|..
T Consensus 9 fkllIigDsgVGKssLl~rF~dd----------------tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD----------------TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc----------------ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 46789999999999999888532 11111111122233 3333444556788999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
.+..+.+..+++++|.|.+.+.. ...++.++.++.. .+| -++|.||.|..+..... .++.+.+..+.+
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~RrvV~---t~dAr~~A~~mg----- 143 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVP-KVLVGNKNDDPERRVVD---TEDARAFALQMG----- 143 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcccc-ceecccCCCCccceeee---hHHHHHHHHhcC-----
Confidence 99999999999999999998765 4445555555543 466 46889999987632211 134555655544
Q ss_pred ccEEEcchhhhH
Q 011581 241 VPIISGSALLAL 252 (482)
Q Consensus 241 ~~~i~~Sa~~g~ 252 (482)
+.++.+|+++..
T Consensus 144 ie~FETSaKe~~ 155 (198)
T KOG0079|consen 144 IELFETSAKENE 155 (198)
T ss_pred chheehhhhhcc
Confidence 678999999887
No 295
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.9e-12 Score=111.05 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=111.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.+...+|+++|--+|||||++..|-.. . . ...-.|+....-.+++.+..+++||..|+.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~-----E-------~-------vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLG-----E-------I-------VTTVPTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccC-----C-------c-------ccCCCccccceeEEEEcceEEEEEecCCCccc
Confidence 355689999999999999999887321 0 0 00012444444456667999999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHH-HHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHI-LLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l-~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
...+..+....+++|+|||+++... ...++.+ +++... +.| ++++.||.|+.+.-.. .++.+.|....+
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~als~-----~ei~~~L~l~~l 148 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGALSA-----AEITNKLGLHSL 148 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccCCH-----HHHHhHhhhhcc
Confidence 9999999999999999999998433 3334333 333222 456 8899999999863221 245555555555
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.....-+-.++|.+|+ |+.+-+++|.+.+
T Consensus 149 ~~~~w~iq~~~a~~G~------------------GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 149 RSRNWHIQSTCAISGE------------------GLYEGLDWLSNNL 177 (181)
T ss_pred CCCCcEEeeccccccc------------------cHHHHHHHHHHHH
Confidence 5455667788999998 8888888887654
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.32 E-value=6.3e-12 Score=119.00 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=85.5
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeee---------------------------E
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATV---------------------------E 142 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~---------------------------~ 142 (482)
|+|++||||||++.++.......++.. ..-++|...++......++.... .
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~--~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDV--YIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-E--EEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCc--eEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 689999999999999987765554321 11233333322222112111100 0
Q ss_pred ee-------cCCeEEEEEeCCCchhhHHHH------Hhhcc--cCCeEEEeecCCCCChHHH-----HHHHHHHHHcCCC
Q 011581 143 YE-------TENRHYAHVDCPGHADYVKNM------ITGAA--QMDGAILVVSGADGPMPQT-----KEHILLAKQVGVP 202 (482)
Q Consensus 143 ~~-------~~~~~i~liDtPG~~~~~~~~------~~~~~--~~D~~ilVvda~~g~~~~t-----~e~l~~~~~~~ip 202 (482)
++ .....+.|+||||+.++.... ...+. ..=++|+++|+..-..+.. .-.+.....+++|
T Consensus 79 ~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 79 IDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 00 012379999999988774333 33333 3457889999875333222 2222334457999
Q ss_pred cEEEEEecCCCCChH--HH-----------------HHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCccc
Q 011581 203 NMVVFLNKQDQVDDE--EL-----------------LQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKR 263 (482)
Q Consensus 203 ~iivviNK~D~~~~~--~~-----------------~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~ 263 (482)
.|.|+||+|+.+.. .. ...+..++.+++..++. ..+++|+|+.++.
T Consensus 159 -~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~----------- 223 (238)
T PF03029_consen 159 -HVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGE----------- 223 (238)
T ss_dssp -EEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTT-----------
T ss_pred -EEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChH-----------
Confidence 67899999998721 11 12223345555555543 2389999999988
Q ss_pred CcchhhhhHHHHHHHhhh
Q 011581 264 GENQWVDKIYELMDSVDS 281 (482)
Q Consensus 264 ~~~~w~~gi~~Ll~~l~~ 281 (482)
|+.+|+..+++
T Consensus 224 -------~~~~L~~~id~ 234 (238)
T PF03029_consen 224 -------GMEELLAAIDK 234 (238)
T ss_dssp -------THHHHHHHHHH
T ss_pred -------HHHHHHHHHHH
Confidence 88888888765
No 297
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.6e-11 Score=119.31 Aligned_cols=223 Identities=17% Similarity=0.224 Sum_probs=142.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
.+.+-|+++|++|.|||||+..|....... .-.+...-+|+ .....++++|+.+| +-+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~-------------ti~~i~GPiTv------vsgK~RRiTflEcp---~Dl 124 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-------------TIDEIRGPITV------VSGKTRRITFLECP---SDL 124 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHh-------------hhhccCCceEE------eecceeEEEEEeCh---HHH
Confidence 456778999999999999999998652211 11111112333 33467889999999 556
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
..|+.-+..+|+++|+||++-|..-.|.|++.++...|.|+++-|++..|+-........+++.+..-+-.--+. ...
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyq--GaK 202 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQ--GAK 202 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcC--Cce
Confidence 788888899999999999999999999999999999999999999999999876555554444443322221222 345
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEe---------eC--CCceEE
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFS---------IT--GRGTVA 311 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~---------v~--g~G~v~ 311 (482)
++..|...+-- ... ..|..|-.++.-..-.|-++.+....+..+++-. -+ |+-..+
T Consensus 203 lFylsgV~nGR-------YpD------reilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~v 269 (1077)
T COG5192 203 LFYLSGVENGR-------YPD------REILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITV 269 (1077)
T ss_pred EEEecccccCC-------CCC------HHHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEE
Confidence 67777653210 000 0123333333222223444444444444443322 11 233457
Q ss_pred EEEEEe-eeeecCCEEEEecCCccceeEEEEE
Q 011581 312 TGRVER-GTIKVGETVDLVGLKETRNFTVTGV 342 (482)
Q Consensus 312 ~G~v~s-G~l~~g~~v~i~p~~~~~~~~V~~i 342 (482)
+|.+.. |-.+...+|.|.+-|.+....|..+
T Consensus 270 YGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L 301 (1077)
T COG5192 270 YGYLHGTGLPRKDMEVHIPGVGDFRMADVEVL 301 (1077)
T ss_pred EEEecCCCCCCCCceEeccCccccchhhhhhc
Confidence 888887 7778888888877776554444444
No 298
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.4e-11 Score=106.41 Aligned_cols=168 Identities=22% Similarity=0.213 Sum_probs=111.9
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
.++....|.|+|.-++||||++.++-.... ..+. + .+.+.. .|+-......+..+..+.|||..|++
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~--------l--~~~ki~--~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGG--------L--NPSKIT--PTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcC--------C--CHHHee--cccceeecceeeccceeEEEEcCChH
Confidence 456678999999999999999999854322 1111 0 111111 23333334445557789999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCCh-----HHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPM-----PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~-----~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
.....+..++..++++++||||++... .+-+..+..-...|+| +++..||-|+.+..+.. +++..+...
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~~~~~-----El~~~~~~~ 154 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNAMEAA-----ELDGVFGLA 154 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhhhhHH-----HHHHHhhhh
Confidence 999999899999999999999998332 2223333333445899 77889999998743322 333333311
Q ss_pred -CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 235 -EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 235 -~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
..+....||.|+||++|. |+.+-.+++...++
T Consensus 155 e~~~~rd~~~~pvSal~ge------------------gv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 155 ELIPRRDNPFQPVSALTGE------------------GVKEGIEWLVKKLE 187 (197)
T ss_pred hhcCCccCccccchhhhcc------------------cHHHHHHHHHHHHh
Confidence 123357899999999998 66666666665543
No 299
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=7.9e-12 Score=105.86 Aligned_cols=155 Identities=19% Similarity=0.113 Sum_probs=103.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceee----eeeeEeecCCeEEEEEeCCCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN----TATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~----~~~~~~~~~~~~i~liDtPG~ 158 (482)
...++|+++|.-.+|||+|+-+.....-. +.+- .|+. .....++...-.+.||||+|+
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn------------~kHl------sTlQASF~~kk~n~ed~ra~L~IWDTAGQ 72 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFN------------CKHL------STLQASFQNKKVNVEDCRADLHIWDTAGQ 72 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcc------------hhhH------HHHHHHHhhcccccccceeeeeeeeccch
Confidence 34689999999999999999888642100 0000 0111 111223333456889999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
++|...---+++.+|+++||.|.++....|-...| ..++. ..+. +++|.||+|+....... . ++...+.+..
T Consensus 73 ErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEeeR~Vt--~-qeAe~YAesv 148 (218)
T KOG0088|consen 73 ERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEEERQVT--R-QEAEAYAESV 148 (218)
T ss_pred HhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHHhhhhh--H-HHHHHHHHhh
Confidence 99987776778899999999999987665543333 33333 2455 78899999996432221 1 2445555555
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
| ..++.+||+.+. |+.+|++.|...
T Consensus 149 G-----A~y~eTSAk~N~------------------Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 149 G-----ALYMETSAKDNV------------------GISELFESLTAK 173 (218)
T ss_pred c-----hhheeccccccc------------------CHHHHHHHHHHH
Confidence 5 457899999887 888888887663
No 300
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.30 E-value=3.7e-11 Score=118.32 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=52.6
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--------------e-eEee-cCCeEEE
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--------------T-VEYE-TENRHYA 151 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--------------~-~~~~-~~~~~i~ 151 (482)
|+++|.+++|||||+|+|++.....+...+.+. +...|+..-.. . ..+. .....+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~--------~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~ 72 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTI--------DPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVE 72 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccc--------cceeEEEEEecCCCchhhhhhhcccccccccCcCcceEE
Confidence 589999999999999999975333222222110 00111100000 0 0000 1234689
Q ss_pred EEeCCCc----hhh---HHHHHhhcccCCeEEEeecCCC
Q 011581 152 HVDCPGH----ADY---VKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 152 liDtPG~----~~~---~~~~~~~~~~~D~~ilVvda~~ 183 (482)
+|||||. .++ ....+..++.+|++++|+|+..
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999996 333 2355667899999999999973
No 301
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=6.6e-11 Score=105.91 Aligned_cols=135 Identities=22% Similarity=0.286 Sum_probs=90.0
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
+.++.....|.++|..|+|||+|+-+|..... +..-.++......|..++...++||.|||
T Consensus 32 ~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~-------------------~~TvtSiepn~a~~r~gs~~~~LVD~PGH 92 (238)
T KOG0090|consen 32 LFRRSKQNAVLLVGLSDSGKTSLFTQLITGSH-------------------RGTVTSIEPNEATYRLGSENVTLVDLPGH 92 (238)
T ss_pred HHhhccCCcEEEEecCCCCceeeeeehhcCCc-------------------cCeeeeeccceeeEeecCcceEEEeCCCc
Confidence 34444457899999999999999999975310 01112334444556666777999999999
Q ss_pred hhhHHHHHhhcc---cCCeEEEeecCCCCCh--HHHHHHHHH-HH-H---cCCCcEEEEEecCCCCC---hHHHHHHHHH
Q 011581 159 ADYVKNMITGAA---QMDGAILVVSGADGPM--PQTKEHILL-AK-Q---VGVPNMVVFLNKQDQVD---DEELLQLVEL 225 (482)
Q Consensus 159 ~~~~~~~~~~~~---~~D~~ilVvda~~g~~--~~t~e~l~~-~~-~---~~ip~iivviNK~D~~~---~~~~~~~i~~ 225 (482)
.+........+. .+-++|+|||+..-.. ...-|++.. +. . .+.++++++.||.|+.. ++...+.++.
T Consensus 93 ~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEk 172 (238)
T KOG0090|consen 93 SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEK 172 (238)
T ss_pred HHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHH
Confidence 999888877776 7899999999876332 333444422 21 1 24455999999999875 2334455556
Q ss_pred HHHHHHh
Q 011581 226 EVRELLS 232 (482)
Q Consensus 226 ~i~~~l~ 232 (482)
|+..+.+
T Consensus 173 Ei~~lr~ 179 (238)
T KOG0090|consen 173 EIHKLRE 179 (238)
T ss_pred HHHHHHH
Confidence 6655443
No 302
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.24 E-value=1.1e-10 Score=91.97 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=71.9
Q ss_pred EEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeecccccceeecCCeEEEEEccccccCcccCe
Q 011581 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGM 374 (482)
Q Consensus 296 ~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 374 (482)
..|.++|++.+.|+++.|+|.+|.+++|+.+.++|.++. +..+|++|+.+++.+++|.+|+.|+|.|++.+ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 568899998888999999999999999999999997631 36799999999999999999999999999876 999999
Q ss_pred EEe
Q 011581 375 VLA 377 (482)
Q Consensus 375 vl~ 377 (482)
+|-
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 973
No 303
>PTZ00099 rab6; Provisional
Probab=99.23 E-value=8.8e-11 Score=106.41 Aligned_cols=113 Identities=16% Similarity=0.084 Sum_probs=79.0
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHH-HHc--CCCcEEEEEecCCCCChHHHHH
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQV--GVPNMVVFLNKQDQVDDEELLQ 221 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~-~~~--~ip~iivviNK~D~~~~~~~~~ 221 (482)
....+.||||||+++|...+...++.+|++|+|+|+++....+. .+.+..+ ... ++| +++|.||+|+.+......
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~~ 105 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKVTY 105 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCCCH
Confidence 34678899999999999888888999999999999988543222 2333323 222 455 789999999964221111
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 222 LVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
.+...+.+.++ ..++++||++|. |+.++++.|.+.++.
T Consensus 106 ---~e~~~~~~~~~-----~~~~e~SAk~g~------------------nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 106 ---EEGMQKAQEYN-----TMFHETSAKAGH------------------NIKVLFKKIAAKLPN 143 (176)
T ss_pred ---HHHHHHHHHcC-----CEEEEEECCCCC------------------CHHHHHHHHHHHHHh
Confidence 12233333332 568999999998 889999999887754
No 304
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.22 E-value=4.5e-10 Score=105.25 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=91.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCchhhHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~ 165 (482)
||.++|..++||||..+.+.+.... .+-..-|.|++.....+.. ....+.+||+||+.+|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p---------------~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP---------------RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G---------------GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc---------------hhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 6899999999999999999754211 1113345566666655543 45589999999998876653
Q ss_pred -----HhhcccCCeEEEeecCCCCChHHH----HHHHHHHHHc--CCCcEEEEEecCCCCChHH---HHHHHHHHHHHHH
Q 011581 166 -----ITGAAQMDGAILVVSGADGPMPQT----KEHILLAKQV--GVPNMVVFLNKQDQVDDEE---LLQLVELEVRELL 231 (482)
Q Consensus 166 -----~~~~~~~D~~ilVvda~~g~~~~t----~e~l~~~~~~--~ip~iivviNK~D~~~~~~---~~~~i~~~i~~~l 231 (482)
..-++.++++|+|+|+........ .+.+..+... +++ +.|++.|||++.++. .++.+++.+.+.+
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 344578999999999994333333 3333334433 455 788999999987543 4555566677777
Q ss_pred hhcCCCCCCccEEEcchhhh
Q 011581 232 SSYEFPGDDVPIISGSALLA 251 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g 251 (482)
...+.. .+.++.+|-+..
T Consensus 145 ~~~~~~--~~~~~~TSI~D~ 162 (232)
T PF04670_consen 145 EDLGIE--DITFFLTSIWDE 162 (232)
T ss_dssp HHTT-T--SEEEEEE-TTST
T ss_pred hhcccc--ceEEEeccCcCc
Confidence 766543 578888988764
No 305
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.22 E-value=4e-10 Score=105.33 Aligned_cols=134 Identities=18% Similarity=0.304 Sum_probs=84.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhh-hcCCceeeeeeeEeecCCeEEEEEeCCCchh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE-RARGITINTATVEYETENRHYAHVDCPGHAD---- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~---- 160 (482)
++|+++|..|+||||++|.|++... ++.. .....|..........++..+++|||||..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~---------------f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~ 65 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEV---------------FKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGS 65 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS----------------SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc---------------eeeccccCCcccccceeeeeecceEEEEEeCCCCCCCccc
Confidence 5899999999999999999986522 1111 1223344444444577899999999999422
Q ss_pred ---hHHHHHhh----cccCCeEEEeecCCCCChHHHHHHHHHHHHc-C---CCcEEEEEecCCCCChHHHHHHHH----H
Q 011581 161 ---YVKNMITG----AAQMDGAILVVSGADGPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVDDEELLQLVE----L 225 (482)
Q Consensus 161 ---~~~~~~~~----~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-~---ip~iivviNK~D~~~~~~~~~~i~----~ 225 (482)
...++... ....|++|||+... .+....+..+..+... | .++++|+++..|...+....+.++ .
T Consensus 66 ~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~ 144 (212)
T PF04548_consen 66 DEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNE 144 (212)
T ss_dssp HHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCch
Confidence 23333332 34679999999988 6777777777665543 3 357899999999876443322222 3
Q ss_pred HHHHHHhhcC
Q 011581 226 EVRELLSSYE 235 (482)
Q Consensus 226 ~i~~~l~~~~ 235 (482)
.++++++.++
T Consensus 145 ~l~~li~~c~ 154 (212)
T PF04548_consen 145 ALQELIEKCG 154 (212)
T ss_dssp HHHHHHHHTT
T ss_pred hHhHHhhhcC
Confidence 4777887775
No 306
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.1e-11 Score=105.05 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=97.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-------C--CeEEEEEeC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-------E--NRHYAHVDC 155 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-------~--~~~i~liDt 155 (482)
.+++..+|..|+|||+++-+.+.. + +... + -..-||........+.. . ..++.+|||
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~-----~--F~~q-F------IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDT 74 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDG-----K--FNTQ-F------ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDT 74 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCC-----c--ccce-e------EEEeecccccceEEEeccCCCCCCcceEEEEeeecc
Confidence 356778999999999998776532 1 1000 0 00111111111111211 1 235679999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
+|+++|...+-...+.+-+.+|++|.+..- +-.++..+.+++.. .-|.+|++.||+|+.+.....+ .+..++.
T Consensus 75 AGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~---~qa~~La 151 (219)
T KOG0081|consen 75 AGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE---DQAAALA 151 (219)
T ss_pred ccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH---HHHHHHH
Confidence 999999999999999999999999988633 34445555555443 4577999999999987443333 4567777
Q ss_pred hhcCCCCCCccEEEcchhhhHHH
Q 011581 232 SSYEFPGDDVPIISGSALLALEA 254 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~ 254 (482)
.+++ +|++.+||-+|.|.
T Consensus 152 ~kyg-----lPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 152 DKYG-----LPYFETSACTGTNV 169 (219)
T ss_pred HHhC-----CCeeeeccccCcCH
Confidence 7776 68999999999853
No 307
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.21 E-value=9.6e-11 Score=99.97 Aligned_cols=145 Identities=15% Similarity=0.088 Sum_probs=96.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-C--CeEEEEEeCCCchhh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-E--NRHYAHVDCPGHADY 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~--~~~i~liDtPG~~~~ 161 (482)
..++.++|..-+|||+|+..++... +++-....+.++.-...++. . ..++.+|||+|+++|
T Consensus 8 qfrlivigdstvgkssll~~ft~gk----------------faelsdptvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGK----------------FAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCc----------------ccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 4689999999999999999997531 01111111111111111111 1 245789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHH-H-HHcC---CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILL-A-KQVG---VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~-~-~~~~---ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
...+.++++++-++++|.|.++.......+.|.. + ...+ .+.+.+|..|.|+....+... ++-+++.+..|+
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~---EEaEklAa~hgM 148 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA---EEAEKLAASHGM 148 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH---HHHHHHHHhcCc
Confidence 9999999999999999999988655444333322 2 2223 233667889999986443322 356667777764
Q ss_pred CCCCccEEEcchhhhHH
Q 011581 237 PGDDVPIISGSALLALE 253 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~ 253 (482)
.|+.+|+++|.|
T Consensus 149 -----~FVETSak~g~N 160 (213)
T KOG0091|consen 149 -----AFVETSAKNGCN 160 (213)
T ss_pred -----eEEEecccCCCc
Confidence 699999999984
No 308
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=106.54 Aligned_cols=143 Identities=21% Similarity=0.179 Sum_probs=93.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCc-eeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..+|+++|..|+|||+|+-++++.. +.++....+ +.......++.+...+.|+||+|.++|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~----------------f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~ 66 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR----------------FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA 66 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc----------------cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChH
Confidence 5789999999999999999987431 111111111 11122233333445667999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHH---HH-cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLA---KQ-VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~---~~-~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
....++..+|+.++|.+.++....+. ...+..+ +. ..+| +++|.||+|+........ ++-..+...+
T Consensus 67 ~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V~~---eeg~~la~~~---- 138 (196)
T KOG0395|consen 67 MRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQVSE---EEGKALARSW---- 138 (196)
T ss_pred HHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccccCH---HHHHHHHHhc----
Confidence 99999999999999999998544332 2222222 11 2467 899999999976322211 2334444443
Q ss_pred CCccEEEcchhhhH
Q 011581 239 DDVPIISGSALLAL 252 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~ 252 (482)
.++|+.+||+...
T Consensus 139 -~~~f~E~Sak~~~ 151 (196)
T KOG0395|consen 139 -GCAFIETSAKLNY 151 (196)
T ss_pred -CCcEEEeeccCCc
Confidence 3679999999876
No 309
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.19 E-value=2.2e-10 Score=113.78 Aligned_cols=165 Identities=18% Similarity=0.204 Sum_probs=92.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCc---eeeeeeeEeecC-CeEEEEEeCCCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGI---TINTATVEYETE-NRHYAHVDCPGH 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~---Ti~~~~~~~~~~-~~~i~liDtPG~ 158 (482)
...++|+|+|.+|+|||||+|+|.+-..+. +..-..|+ |... ..|... ...+++||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d--------------~~aA~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHED--------------EGAAPTGVVETTMEP--TPYPHPKFPNVTLWDLPGI 96 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTS--------------TTS--SSSHSCCTS---EEEE-SS-TTEEEEEE--G
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCC--------------cCcCCCCCCcCCCCC--eeCCCCCCCCCeEEeCCCC
Confidence 457899999999999999999996431110 00111222 2211 122222 235999999995
Q ss_pred -------hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC------------ChHHH
Q 011581 159 -------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV------------DDEEL 219 (482)
Q Consensus 159 -------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~------------~~~~~ 219 (482)
.+|+..+ .+...|+.|++.+ ..........+..+..+|.| +.+|-+|+|.. +.++.
T Consensus 97 gt~~f~~~~Yl~~~--~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~-fyfVRTKvD~Dl~~~~~~~p~~f~~e~~ 171 (376)
T PF05049_consen 97 GTPNFPPEEYLKEV--KFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKK-FYFVRTKVDSDLYNERRRKPRTFNEEKL 171 (376)
T ss_dssp GGSS--HHHHHHHT--TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-E-EEEEE--HHHHHHHHHCC-STT--HHTH
T ss_pred CCCCCCHHHHHHHc--cccccCEEEEEeC--CCCchhhHHHHHHHHHcCCc-EEEEEecccccHhhhhccCCcccCHHHH
Confidence 3344433 4567898777665 33556666777788888998 88999999951 12334
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 220 LQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
.+.+.+...+.|++.+.. ..+++.+|.+.-. -| .++.|.+.|...+|..
T Consensus 172 L~~IR~~c~~~L~k~gv~--~P~VFLVS~~dl~---------------~y-DFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 172 LQEIRENCLENLQKAGVS--EPQVFLVSSFDLS---------------KY-DFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHHHHHHHHHHHCTT-S--S--EEEB-TTTTT---------------ST-THHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHHHHHHcCCC--cCceEEEeCCCcc---------------cC-ChHHHHHHHHHHhHHH
Confidence 556666667777776653 5688999987532 01 4677888887777654
No 310
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.18 E-value=6e-10 Score=113.10 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=53.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe----------------------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY---------------------- 143 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~---------------------- 143 (482)
++|+++|.+|+|||||+|+|++.....+...+ .|++......
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f----------------~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPF----------------TTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCC----------------cceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 58999999999999999999975333222211 1222111100
Q ss_pred -e-cCCeEEEEEeCCCch-------hhHHHHHhhcccCCeEEEeecCC
Q 011581 144 -E-TENRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSGA 182 (482)
Q Consensus 144 -~-~~~~~i~liDtPG~~-------~~~~~~~~~~~~~D~~ilVvda~ 182 (482)
. .....+.|+||||.. ......+..++.+|++++|||+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0 112457899999942 23446667788999999999997
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.16 E-value=1.3e-10 Score=107.66 Aligned_cols=167 Identities=20% Similarity=0.246 Sum_probs=92.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhh-------------------------cCCceee
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER-------------------------ARGITIN 137 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~-------------------------~~g~Ti~ 137 (482)
+....|.++|-.|+||||++.+|...+...... .+.-++|..-.+. ..||...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p--pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP--PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC--CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 345678999999999999999998665443321 1122222221111 1223221
Q ss_pred eeee--Ee---------ecCCeEEEEEeCCCchhhHHHHHhhc--------ccCCeEEEeecCCCCChHHH-----HHHH
Q 011581 138 TATV--EY---------ETENRHYAHVDCPGHADYVKNMITGA--------AQMDGAILVVSGADGPMPQT-----KEHI 193 (482)
Q Consensus 138 ~~~~--~~---------~~~~~~i~liDtPG~~~~~~~~~~~~--------~~~D~~ilVvda~~g~~~~t-----~e~l 193 (482)
.... .| ..+..++.||||||+.+.+....+|. ...-++++|||....-.+.| ...-
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 1110 01 01345699999999765422222221 23457889999876444333 2222
Q ss_pred HHHHHcCCCcEEEEEecCCCCChHHHHHHHHH--HHHHHHhh--cCCC--------------CCCccEEEcchhhhH
Q 011581 194 LLAKQVGVPNMVVFLNKQDQVDDEELLQLVEL--EVRELLSS--YEFP--------------GDDVPIISGSALLAL 252 (482)
Q Consensus 194 ~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~--~i~~~l~~--~~~~--------------~~~~~~i~~Sa~~g~ 252 (482)
.++....+| +|++.||+|+.+.+-..+++.. .+++.+.. -++- -.++..+.+|+.+|.
T Consensus 175 Silyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 175 SILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 445566899 8999999999885322222210 12222221 0000 025788999999998
No 312
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=4.8e-10 Score=93.19 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=98.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~ 161 (482)
..++-.++|..|+|||.|+.+++...- | ....+.+.++.....++.. ..++.||||.|+++|
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf------------m----adcphtigvefgtriievsgqkiklqiwdtagqerf 73 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF------------M----ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 73 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH------------h----hcCCcccceecceeEEEecCcEEEEEEeecccHHHH
Confidence 467889999999999999999985421 1 1122333444444445444 456789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHHcCCCc--EEEEEecCCCCChHHH-HHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQVGVPN--MVVFLNKQDQVDDEEL-LQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~~~ip~--iivviNK~D~~~~~~~-~~~i~~~i~~~l~~~~~~ 237 (482)
..-+.++.+.+-++++|.|.+......... .+..++.+-.|. ++++.||.|+.+..+. ++ +.+++.+..|
T Consensus 74 ravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye----eak~faeeng-- 147 (215)
T KOG0097|consen 74 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE----EAKEFAEENG-- 147 (215)
T ss_pred HHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH----HHHHHHhhcC--
Confidence 999999999999999999988654332222 223344443332 5667799999764332 32 4455555544
Q ss_pred CCCccEEEcchhhhHH
Q 011581 238 GDDVPIISGSALLALE 253 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~ 253 (482)
..|+..||++|.|
T Consensus 148 ---l~fle~saktg~n 160 (215)
T KOG0097|consen 148 ---LMFLEASAKTGQN 160 (215)
T ss_pred ---eEEEEecccccCc
Confidence 5789999999984
No 313
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.14 E-value=8.6e-10 Score=109.06 Aligned_cols=160 Identities=24% Similarity=0.300 Sum_probs=96.5
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCC-CCcccccccCChhhhcCCcee---eeee-----eEe---ecC
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNS-APKKYDEIDAAPEERARGITI---NTAT-----VEY---ETE 146 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~-~~~~~~~~d~~~~e~~~g~Ti---~~~~-----~~~---~~~ 146 (482)
..|....+.|+++|++++|||||+|+|.+...-..-. .....+..|..+. ...|.|+ +..+ ..+ +.-
T Consensus 11 a~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~ 89 (492)
T TIGR02836 11 AERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGT 89 (492)
T ss_pred HHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCc-CCCCCCcccCCCccccCcceEEeccCCC
Confidence 3566788999999999999999999998762211110 0000111122222 2345333 3222 111 112
Q ss_pred CeEEEEEeCCCchhh-------------------------HHH----HHhhcc-cCCeEEEee-cCC------CCChHHH
Q 011581 147 NRHYAHVDCPGHADY-------------------------VKN----MITGAA-QMDGAILVV-SGA------DGPMPQT 189 (482)
Q Consensus 147 ~~~i~liDtPG~~~~-------------------------~~~----~~~~~~-~~D~~ilVv-da~------~g~~~~t 189 (482)
...+.||||+|+.+- ... +...+. .+|.+|+|. |++ ++.....
T Consensus 90 ~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 90 KFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred cccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH
Confidence 367899999994211 111 333444 799999999 886 4566778
Q ss_pred HHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhh
Q 011581 190 KEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALL 250 (482)
Q Consensus 190 ~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~ 250 (482)
.+.+..++..++| +++++||+|-...+. ..+.+++ -+++ ++|++++|+..
T Consensus 170 e~~i~eLk~~~kP-fiivlN~~dp~~~et--~~l~~~l---~eky-----~vpvl~v~c~~ 219 (492)
T TIGR02836 170 ERVIEELKELNKP-FIILLNSTHPYHPET--EALRQEL---EEKY-----DVPVLAMDVES 219 (492)
T ss_pred HHHHHHHHhcCCC-EEEEEECcCCCCchh--HHHHHHH---HHHh-----CCceEEEEHHH
Confidence 8889999999999 899999999543221 1111122 2333 37888988754
No 314
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.14 E-value=1.3e-10 Score=104.44 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=50.0
Q ss_pred CeEEEEEeCCCchhh----HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 147 NRHYAHVDCPGHADY----VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 147 ~~~i~liDtPG~~~~----~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
...+.|+||||..+. ...+...+..+|++|+|+++......+..+.+........+.+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 456899999996332 24455666899999999999998887777777777766666699999995
No 315
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.13 E-value=2.4e-10 Score=93.45 Aligned_cols=139 Identities=26% Similarity=0.320 Sum_probs=93.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC----chhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG----HADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----~~~~ 161 (482)
.+++++|.+|+|||||++.|-+...... .|. . ++++++ -.||||| |..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk--------------------KTQ---A--ve~~d~--~~IDTPGEy~~~~~~ 54 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK--------------------KTQ---A--VEFNDK--GDIDTPGEYFEHPRW 54 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc--------------------ccc---e--eeccCc--cccCCchhhhhhhHH
Confidence 3799999999999999999965411000 011 1 222221 3689999 5666
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
....+.....+|++++|-.++++...-.-- +...+.++.|=+++|+|+..+.+ .+ ..+++|...| .-
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~s~f~p~----f~~~~~k~vIgvVTK~DLaed~d-I~----~~~~~L~eaG----a~ 121 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPESRFPPG----FLDIGVKKVIGVVTKADLAEDAD-IS----LVKRWLREAG----AE 121 (148)
T ss_pred HHHHHHHhhccceeeeeecccCccccCCcc----cccccccceEEEEecccccchHh-HH----HHHHHHHHcC----Cc
Confidence 555666677899999999999865422211 12223444788999999996433 22 3455565555 36
Q ss_pred cEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 242 PIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 242 ~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
|++.+|+.+.. |+++|++.|...
T Consensus 122 ~IF~~s~~d~~------------------gv~~l~~~L~~~ 144 (148)
T COG4917 122 PIFETSAVDNQ------------------GVEELVDYLASL 144 (148)
T ss_pred ceEEEeccCcc------------------cHHHHHHHHHhh
Confidence 88999998876 999999998764
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.12 E-value=2e-09 Score=105.93 Aligned_cols=173 Identities=20% Similarity=0.208 Sum_probs=92.9
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCC----------cccccc-cCChhh---hcCCceeeeee------
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAP----------KKYDEI-DAAPEE---RARGITINTAT------ 140 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~----------~~~~~~-d~~~~e---~~~g~Ti~~~~------ 140 (482)
.......|+++|.+|+|||||++.|.......|.... .....+ |..... ...+.-+....
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLG 109 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcccccc
Confidence 3445778999999999999999999876554433110 000000 100000 00111110000
Q ss_pred ----------eEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 141 ----------VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 141 ----------~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
..++..++.+.||||||...-. ...+..+|.++++.+...+..-+. +.. ...++| .++++||
T Consensus 110 ~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~---~~~-~l~~~~-~ivv~NK 181 (300)
T TIGR00750 110 GLSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQG---IKA-GLMEIA-DIYVVNK 181 (300)
T ss_pred chhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHH---HHH-HHhhhc-cEEEEEc
Confidence 0123457889999999965322 234566898888866543322111 111 123666 5789999
Q ss_pred CCCCChHHHHHHHHHHH----HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 211 QDQVDDEELLQLVELEV----RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 211 ~D~~~~~~~~~~i~~~i----~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+|+...+... .....+ ..+.+.. .....|++++||.++. |+.+|+++|.+.
T Consensus 182 ~Dl~~~~~~~-~~~~~~~~~l~~l~~~~--~~~~~~v~~iSA~~g~------------------Gi~~L~~~i~~~ 236 (300)
T TIGR00750 182 ADGEGATNVT-IARLMLALALEEIRRRE--DGWRPPVLTTSAVEGR------------------GIDELWDAIEEH 236 (300)
T ss_pred ccccchhHHH-HHHHHHHHHHhhccccc--cCCCCCEEEEEccCCC------------------CHHHHHHHHHHH
Confidence 9998754321 111111 2221211 0113579999999987 666666666553
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.11 E-value=5e-10 Score=104.62 Aligned_cols=172 Identities=22% Similarity=0.219 Sum_probs=95.0
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCC----------Ccccc-cccCChh---hhcCCceeeeee----
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSA----------PKKYD-EIDAAPE---ERARGITINTAT---- 140 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~----------~~~~~-~~d~~~~---e~~~g~Ti~~~~---- 140 (482)
.....+...|+|.|.+|+|||||+++|.......|... +.... .-|+... ....++-+-...
T Consensus 23 ~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~ 102 (266)
T PF03308_consen 23 YPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGS 102 (266)
T ss_dssp GGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SS
T ss_pred HhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCC
Confidence 34445678999999999999999999998776655421 11111 1122111 122232221100
Q ss_pred ------------eEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHcCCCcEEE
Q 011581 141 ------------VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQVGVPNMVV 206 (482)
Q Consensus 141 ------------~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~~ip~iiv 206 (482)
..++..++.++||.|.|...--- .-...+|.+++|+-...|..-|. .-.++++. |+
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-------i~ 172 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-------IF 172 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-------EE
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-------EE
Confidence 01234588999999998433211 22456999999998776554333 33333332 57
Q ss_pred EEecCCCCChHHHHHHHHHHHHHHHhhcC--CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 207 FLNKQDQVDDEELLQLVELEVRELLSSYE--FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 207 viNK~D~~~~~~~~~~i~~~i~~~l~~~~--~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
|+||.|+...+.... +++..+.-.. -..-..|++.+||.++. |+++|+++|.++
T Consensus 173 vVNKaD~~gA~~~~~----~l~~~l~l~~~~~~~W~ppV~~tsA~~~~------------------Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 173 VVNKADRPGADRTVR----DLRSMLHLLREREDGWRPPVLKTSALEGE------------------GIDELWEAIDEH 228 (266)
T ss_dssp EEE--SHHHHHHHHH----HHHHHHHHCSTSCTSB--EEEEEBTTTTB------------------SHHHHHHHHHHH
T ss_pred EEeCCChHHHHHHHH----HHHHHHhhccccccCCCCCEEEEEeCCCC------------------CHHHHHHHHHHH
Confidence 899999655444443 4444443221 11124799999999987 888888887764
No 318
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.10 E-value=3.8e-09 Score=99.95 Aligned_cols=181 Identities=22% Similarity=0.205 Sum_probs=106.2
Q ss_pred hhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCC----------CCccccc-ccCChhhh---cCCceeeee-
Q 011581 75 ARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNS----------APKKYDE-IDAAPEER---ARGITINTA- 139 (482)
Q Consensus 75 ~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~----------~~~~~~~-~d~~~~e~---~~g~Ti~~~- 139 (482)
+...+........|+|.|.+|+|||||++.|.....+.|.. .+..... -|+...++ ..|+-+-..
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~ 120 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP 120 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC
Confidence 33444455566799999999999999999998776655541 1111111 12111111 111111000
Q ss_pred ---------------eeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHH--HHHHHHHcCCC
Q 011581 140 ---------------TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE--HILLAKQVGVP 202 (482)
Q Consensus 140 ---------------~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e--~l~~~~~~~ip 202 (482)
...++-.++.++||.|-|-..---. -...+|..++|.=+..|..-|... .++++.
T Consensus 121 srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD----- 192 (323)
T COG1703 121 SRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIAD----- 192 (323)
T ss_pred CCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-----
Confidence 0112345888999999985332111 123489999888777776655532 233332
Q ss_pred cEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 203 NMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 203 ~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
|+|+||+|+...+.....+...+...-....-++-..|++.+||.+|. |+.+|++++.++
T Consensus 193 --i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~------------------Gi~~L~~ai~~h 252 (323)
T COG1703 193 --IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGE------------------GIDELWDAIEDH 252 (323)
T ss_pred --eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCC------------------CHHHHHHHHHHH
Confidence 578999997766555544443333322122222346899999999998 888888888775
Q ss_pred C
Q 011581 283 I 283 (482)
Q Consensus 283 l 283 (482)
.
T Consensus 253 ~ 253 (323)
T COG1703 253 R 253 (323)
T ss_pred H
Confidence 4
No 319
>PTZ00258 GTP-binding protein; Provisional
Probab=99.09 E-value=3.9e-09 Score=106.12 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=60.1
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--------------
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-------------- 146 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------------- 146 (482)
+.....+|+++|.+|+|||||+|+|++.....+.. .+.|++.....+...
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~----------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF----------------PFCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCC----------------CCCcccceEEEEecccchhhHHHHHcCCc
Confidence 34556789999999999999999998654333322 334554444433332
Q ss_pred ---CeEEEEEeCCCch-------hhHHHHHhhcccCCeEEEeecCC
Q 011581 147 ---NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSGA 182 (482)
Q Consensus 147 ---~~~i~liDtPG~~-------~~~~~~~~~~~~~D~~ilVvda~ 182 (482)
...+.|+||||.. ......+..++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2348999999942 23446667788999999999985
No 320
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.08 E-value=3.8e-09 Score=102.28 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=71.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
....++|+++|.+|+|||||+|+|++....... .+ .+.+...........+..+.+|||||..+.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs----------~f-----~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVS----------AF-----QSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCccccc----------CC-----CCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 346789999999999999999999965321110 00 011111112223347889999999996543
Q ss_pred H---HHHHhhc------ccCCeEEEeecCCC-CChHHHHHHHHHHHHc-C---CCcEEEEEecCCCCC
Q 011581 162 V---KNMITGA------AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVD 215 (482)
Q Consensus 162 ~---~~~~~~~------~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~-~---ip~iivviNK~D~~~ 215 (482)
. ......+ ...|++++|...+. .....++..++.+... | ..++||++|+.|...
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1 1111111 25899999954432 2444444555444332 3 245899999999764
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.07 E-value=1.2e-09 Score=101.81 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=93.6
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCccc---ccccCChhhhcCCcee-eeeee--------------
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKY---DEIDAAPEERARGITI-NTATV-------------- 141 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~---~~~d~~~~e~~~g~Ti-~~~~~-------------- 141 (482)
......++|+++|+.|+|||||+++|+......-+...... ...|....+ ..|..+ .....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l 95 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHAL 95 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHH
Confidence 34457899999999999999999999876432100000000 011211111 122111 00000
Q ss_pred -EeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH-H
Q 011581 142 -EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE-L 219 (482)
Q Consensus 142 -~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~-~ 219 (482)
.....+..+.||+|.|..... .......+..+.|+|+.++...+.. .....+.+ .++++||+|+.+... .
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~~~~a-~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK----YPGMFKEA-DLIVINKADLAEAVGFD 167 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh----hHhHHhhC-CEEEEEHHHccccchhh
Confidence 001124578999999931110 0111235666789999876543321 12223456 578999999986321 1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 220 LQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+.+ .+.+++.. ...|++++||++|. |+.++++++.++
T Consensus 168 ~~~~----~~~l~~~~---~~~~i~~~Sa~~g~------------------gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKM----KADAKKIN---PEAEIILMSLKTGE------------------GLDEWLEFLEGQ 205 (207)
T ss_pred HHHH----HHHHHHhC---CCCCEEEEECCCCC------------------CHHHHHHHHHHh
Confidence 2222 22333332 24789999999998 899999998763
No 322
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=4.4e-09 Score=87.70 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=104.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
..+|.++|-.++||||++-.|...... ..-.|+-...-...+.+..+++||..|+.+..+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-------------------~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV-------------------TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc-------------------ccccccceeEEEEEeeeeEEeeeeccCchhhhHH
Confidence 678999999999999999988532100 0001222223334557888999999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCCh-HHHHHHH-HHHH--Hc-CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPM-PQTKEHI-LLAK--QV-GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~-~~t~e~l-~~~~--~~-~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
+.+++....++|+|+|+.+... ...++.+ +++. .+ ..+ ++|..||-|+.++-.- ++++++++-....+.
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~~p-----qei~d~leLe~~r~~ 151 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI-ILILANKQDLPDAMKP-----QEIQDKLELERIRDR 151 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce-EEEEecCcccccccCH-----HHHHHHhccccccCC
Confidence 9999999999999999886422 2233333 2221 12 455 7788899999874211 244555443334444
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..-+.|.+|.+|+ |+.+=+.+|.+.+
T Consensus 152 ~W~vqp~~a~~gd------------------gL~eglswlsnn~ 177 (180)
T KOG0071|consen 152 NWYVQPSCALSGD------------------GLKEGLSWLSNNL 177 (180)
T ss_pred ccEeeccccccch------------------hHHHHHHHHHhhc
Confidence 5667799999998 7666666666543
No 323
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=102.66 Aligned_cols=149 Identities=23% Similarity=0.218 Sum_probs=99.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee-cCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDtPG~~~~ 161 (482)
.+...|+++|++|+|||||+++|++........-|. |.+....... -.+..+.+.||-|+..-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA----------------TLDpT~h~a~Lpsg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA----------------TLDPTLHSAHLPSGNFVLLTDTVGFISD 239 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhhe----------------eccchhhhccCCCCcEEEEeechhhhhh
Confidence 456789999999999999999999653322211111 2222111111 24677899999996332
Q ss_pred --------HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHcCCC------cEEEEEecCCCCChHHHHHHHHHH
Q 011581 162 --------VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVGVP------NMVVFLNKQDQVDDEELLQLVELE 226 (482)
Q Consensus 162 --------~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~~ip------~iivviNK~D~~~~~~~~~~i~~~ 226 (482)
+..++.....+|+++.|+|.++..- .|....+..+..+|+| .+|=|=||+|.....--
T Consensus 240 LP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------- 312 (410)
T KOG0410|consen 240 LPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------- 312 (410)
T ss_pred CcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------
Confidence 3445555678999999999998654 5556667788888886 34556678876542100
Q ss_pred HHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 227 VRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 227 i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+.--.+++|+++|. |++++++++....
T Consensus 313 -----------~E~n~~v~isaltgd------------------gl~el~~a~~~kv 340 (410)
T KOG0410|consen 313 -----------EEKNLDVGISALTGD------------------GLEELLKAEETKV 340 (410)
T ss_pred -----------cccCCccccccccCc------------------cHHHHHHHHHHHh
Confidence 001115789999998 9999999987754
No 324
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.03 E-value=2.6e-10 Score=98.78 Aligned_cols=147 Identities=16% Similarity=0.159 Sum_probs=96.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.++++|+|.-++||||++.+.+..+-..+.... -|+..-.....+..++..+.+|||.|+++|...
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykkt--------------Igvdflerqi~v~~Edvr~mlWdtagqeEfDaI 85 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT--------------IGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI 85 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccc--------------cchhhhhHHHHhhHHHHHHHHHHhccchhHHHH
Confidence 578999999999999999999854322111100 011110011112234455679999999999999
Q ss_pred HHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHH--HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011581 165 MITGAAQMDGAILVVSGADGPM-PQTKEHILLAK--QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDV 241 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~--~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~ 241 (482)
+..+++.+.+.+||++.++... ..+.+..+... ...+| .++|-||+|++++..... .+...+.+.+ +.
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds~~~~---~evE~lak~l-----~~ 156 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIP-TVFVQNKIDLVEDSQMDK---GEVEGLAKKL-----HK 156 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCC-eEEeeccchhhHhhhcch---HHHHHHHHHh-----hh
Confidence 9999999999999999887543 44444433332 23788 788999999998654332 2333344433 25
Q ss_pred cEEEcchhhhHHH
Q 011581 242 PIISGSALLALEA 254 (482)
Q Consensus 242 ~~i~~Sa~~g~~~ 254 (482)
.++-+|++...|.
T Consensus 157 RlyRtSvked~NV 169 (246)
T KOG4252|consen 157 RLYRTSVKEDFNV 169 (246)
T ss_pred hhhhhhhhhhhhh
Confidence 6788898887753
No 325
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.00 E-value=4.8e-09 Score=81.60 Aligned_cols=82 Identities=41% Similarity=0.541 Sum_probs=71.6
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccC
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRG 373 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 373 (482)
++++|.++|.+++.|.++.|+|.+|+|++||.+.+.+.+.....+|++|+.++.+++.+.|||.+++.+... .++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccCCC
Confidence 468899999999999999999999999999999999843334788999999999999999999999988643 379999
Q ss_pred eEEe
Q 011581 374 MVLA 377 (482)
Q Consensus 374 ~vl~ 377 (482)
|+++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9986
No 326
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.00 E-value=6.1e-09 Score=103.49 Aligned_cols=81 Identities=25% Similarity=0.236 Sum_probs=56.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-----------------e
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-----------------R 148 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----------------~ 148 (482)
++|+++|.+|+|||||+|+|++.....+. ..+.|++.....+...+ .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n----------------ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN----------------YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc----------------cccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 68999999999999999999875332222 23344444332222221 2
Q ss_pred EEEEEeCCCch-------hhHHHHHhhcccCCeEEEeecCC
Q 011581 149 HYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSGA 182 (482)
Q Consensus 149 ~i~liDtPG~~-------~~~~~~~~~~~~~D~~ilVvda~ 182 (482)
.+.|+|+||.. ......+..++.+|++++|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 58999999932 23445667788999999999985
No 327
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.00 E-value=2.4e-09 Score=101.00 Aligned_cols=134 Identities=12% Similarity=0.072 Sum_probs=82.0
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhH-HhcCCCCCc--------------ccccc-------cCC---hh--h--h--
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMAL-ASLGNSAPK--------------KYDEI-------DAA---PE--E--R-- 130 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~-~~~g~~~~~--------------~~~~~-------d~~---~~--e--~-- 130 (482)
.-..+.|+++|+.++|||||+++|++.. ...+.+... +...+ +.+ +. + .
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 3456789999999999999999998752 111111000 00000 000 00 0 0
Q ss_pred ----cCCceeeeeeeEeec-CCeEEEEEeCCCchh--------h-----HHHHHhhcc-cCCeEEEeecCCCCChHHH-H
Q 011581 131 ----ARGITINTATVEYET-ENRHYAHVDCPGHAD--------Y-----VKNMITGAA-QMDGAILVVSGADGPMPQT-K 190 (482)
Q Consensus 131 ----~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~--------~-----~~~~~~~~~-~~D~~ilVvda~~g~~~~t-~ 190 (482)
..+++-+.-...+.. .-..++|+||||... . ...+..++. ..+.+++|+|+..++..+. .
T Consensus 103 ~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred hcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHH
Confidence 011222222222222 235789999999741 1 223445556 4569999999999888777 5
Q ss_pred HHHHHHHHcCCCcEEEEEecCCCCCh
Q 011581 191 EHILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 191 e~l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
+..+.+...+.+ .++|+||+|..+.
T Consensus 183 ~ia~~ld~~~~r-ti~ViTK~D~~~~ 207 (240)
T smart00053 183 KLAKEVDPQGER-TIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHHcCCc-EEEEEECCCCCCc
Confidence 777888888888 8889999999873
No 328
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.99 E-value=1e-10 Score=96.32 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=87.2
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe--ecCCeEEEEEeCCCchhhHHHHHh
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY--ETENRHYAHVDCPGHADYVKNMIT 167 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~--~~~~~~i~liDtPG~~~~~~~~~~ 167 (482)
++|..+.|||.|+-++-...--.|. + ...+.|+.....+ .....++.+|||+|+++|..-+..
T Consensus 2 llgds~~gktcllir~kdgafl~~~-------f--------istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN-------F--------ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc-------e--------eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 5799999999987655321000000 0 0011122222222 233456789999999999999999
Q ss_pred hcccCCeEEEeecCCCCChH-HHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccE
Q 011581 168 GAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPI 243 (482)
Q Consensus 168 ~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 243 (482)
+++.+|..+++.|..+.... .-+..+.....+ .+. +.++.||+|+........ ++-..+.+.++ +||
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~v~~---ddg~kla~~y~-----ipf 137 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERAVKR---DDGEKLAEAYG-----IPF 137 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHh-Hhhhccccccchhhcccc---chHHHHHHHHC-----CCc
Confidence 99999999999998875432 223333333333 233 567899999965221111 23445555555 799
Q ss_pred EEcchhhhHH
Q 011581 244 ISGSALLALE 253 (482)
Q Consensus 244 i~~Sa~~g~~ 253 (482)
..+||++|.|
T Consensus 138 metsaktg~n 147 (192)
T KOG0083|consen 138 METSAKTGFN 147 (192)
T ss_pred eecccccccc
Confidence 9999999985
No 329
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.99 E-value=3.3e-09 Score=81.52 Aligned_cols=70 Identities=36% Similarity=0.525 Sum_probs=62.0
Q ss_pred ceEEEEEEEeeeeecCCEEEEecCCc---cceeEEEEEeecccccceeecCCeEEEEEccccccC-cccCeEEe
Q 011581 308 GTVATGRVERGTIKVGETVDLVGLKE---TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKAD-IQRGMVLA 377 (482)
Q Consensus 308 G~v~~G~v~sG~l~~g~~v~i~p~~~---~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 377 (482)
|++++|||++|+|++||+|.+.|.+. +...+|++|+.++.....+.+|+.+++.+...+..+ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999977322 234899999999999999999999999998888888 89999996
No 330
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.98 E-value=7.4e-09 Score=99.61 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=89.4
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhh--cCCce-eeeee---------------
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER--ARGIT-INTAT--------------- 140 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~--~~g~T-i~~~~--------------- 140 (482)
+-.++...-|.++|.+|+|||||+++|++.+...................++ ..|+. +....
T Consensus 98 ~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al 177 (290)
T PRK10463 98 RFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAA 177 (290)
T ss_pred HHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHH
Confidence 3445678899999999999999999998764322110000000000001111 12211 11111
Q ss_pred eEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH-H
Q 011581 141 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE-L 219 (482)
Q Consensus 141 ~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~-~ 219 (482)
..+......+.||++-|.--.-... .+ ..+.-+.|++..+|..... .+ -..+... -++++||+|+++..+ .
T Consensus 178 ~~L~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dkpl-Ky---p~~f~~A-DIVVLNKiDLl~~~~~d 249 (290)
T PRK10463 178 PRLPLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDKPL-KY---PHMFAAA-SLMLLNKVDLLPYLNFD 249 (290)
T ss_pred HHHhhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECccccccch-hc---cchhhcC-cEEEEEhHHcCcccHHH
Confidence 0112234578899998841100000 01 1234567788777643111 11 1112334 367899999986321 1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 220 LQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.+ ++.+.++... ...+++++|+++|+ |+++|+++|..
T Consensus 250 le----~~~~~lr~ln---p~a~I~~vSA~tGe------------------Gld~L~~~L~~ 286 (290)
T PRK10463 250 VE----KCIACAREVN---PEIEIILISATSGE------------------GMDQWLNWLET 286 (290)
T ss_pred HH----HHHHHHHhhC---CCCcEEEEECCCCC------------------CHHHHHHHHHH
Confidence 22 2222333332 24789999999998 88999999865
No 331
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.98 E-value=7e-09 Score=100.61 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=84.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh-
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~- 161 (482)
.+||.++|..|.|||||+|.|++........ ..+.......+...+......++.++ ..++||||||+.+.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 5799999999999999999998652211110 00111112233344544444444444 45789999995322
Q ss_pred ------------HH--------HHHhhc------ccCCeEEEeecCC-CCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 162 ------------VK--------NMITGA------AQMDGAILVVSGA-DGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 162 ------------~~--------~~~~~~------~~~D~~ilVvda~-~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+. +-...- ...|++|++++++ .|+.+.+.+.++.+... ++ +|.|+.|.|..
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vN-vIPvIaKaD~l 155 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VN-VIPVIAKADTL 155 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SE-EEEEESTGGGS
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-cc-EEeEEeccccc
Confidence 11 110000 1468999999987 58888888877766653 55 88999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhcCC
Q 011581 215 DDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 215 ~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
..+++. .++..+.+.++..++
T Consensus 156 t~~el~-~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 156 TPEELQ-AFKQRIREDLEENNI 176 (281)
T ss_dssp -HHHHH-HHHHHHHHHHHHTT-
T ss_pred CHHHHH-HHHHHHHHHHHHcCc
Confidence 966544 456688888887664
No 332
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.98 E-value=2.4e-08 Score=97.12 Aligned_cols=153 Identities=22% Similarity=0.337 Sum_probs=102.1
Q ss_pred HhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhh-hcCCceeeeeeeEeecCCe--EE
Q 011581 74 AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE-RARGITINTATVEYETENR--HY 150 (482)
Q Consensus 74 ~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~~~~~~~--~i 150 (482)
....+..++.-.++|.++|..|.||||++|.|++....... ..+....+ ...++.+......++.++. .+
T Consensus 12 ~r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l 84 (373)
T COG5019 12 QRHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDET-------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNL 84 (373)
T ss_pred HHHHHHHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCC-------CccCcccccCCcceEEEeeeeeeecCCeEEEE
Confidence 34445556677899999999999999999999987322221 11112221 3445555555555555554 56
Q ss_pred EEEeCCCchhhHHH-------------HH-hhc-------c-------cCCeEEEeecCC-CCChHHHHHHHHHHHHcCC
Q 011581 151 AHVDCPGHADYVKN-------------MI-TGA-------A-------QMDGAILVVSGA-DGPMPQTKEHILLAKQVGV 201 (482)
Q Consensus 151 ~liDtPG~~~~~~~-------------~~-~~~-------~-------~~D~~ilVvda~-~g~~~~t~e~l~~~~~~~i 201 (482)
++|||||+.+++.+ .. .++ + ..++|++.+-.+ +|+.+.+.+.+..+.. .+
T Consensus 85 ~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~v 163 (373)
T COG5019 85 TVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RV 163 (373)
T ss_pred EEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-cc
Confidence 89999996555111 11 111 1 468999999876 5899999988776654 34
Q ss_pred CcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 202 PNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 202 p~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
. +|-||-|.|....+++.. .++.+.+.++.+.+
T Consensus 164 N-lIPVI~KaD~lT~~El~~-~K~~I~~~i~~~nI 196 (373)
T COG5019 164 N-LIPVIAKADTLTDDELAE-FKERIREDLEQYNI 196 (373)
T ss_pred C-eeeeeeccccCCHHHHHH-HHHHHHHHHHHhCC
Confidence 4 788999999999766544 55688888887653
No 333
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=7.7e-10 Score=92.57 Aligned_cols=158 Identities=21% Similarity=0.171 Sum_probs=104.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
...+|.++|--|+||+|++-+|-- |.... .. .|+......+++++-.+.+||..|+.....
T Consensus 17 ~e~rililgldGaGkttIlyrlqv-----gevvt------------tk--Ptigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV-----GEVVT------------TK--PTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc-----Ccccc------------cC--CCCCcCccccccccccceeeEccCcccccH
Confidence 567899999999999998776631 11100 01 133333334555788899999999999888
Q ss_pred HHHhhcccCCeEEEeecCCCCCh--HHHHHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPM--PQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
-+..+....|.+|+|||.++... ..-.++..++.. +.--.++++.||+|....-...+ ....|.-..+...
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E-----~~~~L~l~~Lk~r 152 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSE-----VLKMLGLQKLKDR 152 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHH-----HHHHhChHHHhhh
Confidence 89999999999999999987332 222333333332 22234889999999865322221 1111111112224
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+.++..||.+|+ |+++.+|+|.+-+
T Consensus 153 ~~~Iv~tSA~kg~------------------Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 153 IWQIVKTSAVKGE------------------GLDPAMDWLQRPL 178 (182)
T ss_pred eeEEEeecccccc------------------CCcHHHHHHHHHH
Confidence 5789999999998 8999999987744
No 334
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=6.1e-08 Score=88.40 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=97.0
Q ss_pred HHHhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eE
Q 011581 72 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RH 149 (482)
Q Consensus 72 ~~~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~ 149 (482)
..+++.+.-+..-.+||.++|..|.|||||+|.|........... |...+-....+.+....-.++.++ -+
T Consensus 33 ~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~-------~~~~~p~pkT~eik~~thvieE~gVklk 105 (336)
T KOG1547|consen 33 IEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSS-------DNSAEPIPKTTEIKSITHVIEEKGVKLK 105 (336)
T ss_pred HHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCC-------CcccCcccceEEEEeeeeeeeecceEEE
Confidence 456666666777889999999999999999999986543322111 111111122222333233344444 35
Q ss_pred EEEEeCCCchhh---------------------HHHHHhhcc-------cCCeEEEeecCCC-CChHHHHHHHHHHHHcC
Q 011581 150 YAHVDCPGHADY---------------------VKNMITGAA-------QMDGAILVVSGAD-GPMPQTKEHILLAKQVG 200 (482)
Q Consensus 150 i~liDtPG~~~~---------------------~~~~~~~~~-------~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ 200 (482)
+++|||||+.|+ ++.-+...+ ..+++++.+.++. .+.+.+.|++..+...
T Consensus 106 ltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v- 184 (336)
T KOG1547|consen 106 LTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV- 184 (336)
T ss_pred EEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-
Confidence 789999995433 322222211 4578999998874 5668888887666542
Q ss_pred CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 201 VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 201 ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
-.+|-|+-|.|...-+++.+ .++.+++-+...++
T Consensus 185 -vNvvPVIakaDtlTleEr~~-FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 185 -VNVVPVIAKADTLTLEERSA-FKQRIRKELEKHGI 218 (336)
T ss_pred -heeeeeEeecccccHHHHHH-HHHHHHHHHHhcCc
Confidence 23678899999988655543 44577777777664
No 335
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.92 E-value=8.4e-09 Score=95.19 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=63.4
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcE--EEEEecCCCCCh-HHHHHHH
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM--VVFLNKQDQVDD-EELLQLV 223 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~i--ivviNK~D~~~~-~~~~~~i 223 (482)
...+++|+|.|-. ...... ...+|.+|+|+|+.++...+.. . . .++. + ++++||+|+.+. ....+.+
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~--~qi~-~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G---G--PGIT-RSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h---H--hHhh-hccEEEEEhhhccccccccHHHH
Confidence 4578899999921 111111 1136889999999876653321 1 1 1222 3 678999999852 1222222
Q ss_pred HHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 224 ELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+.++.++ ...+++++||++|+ |++++++++.+..
T Consensus 161 ----~~~~~~~~---~~~~i~~~Sa~~g~------------------gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ----ERDAKKMR---GEKPFIFTNLKTKE------------------GLDTVIDWIEHYA 195 (199)
T ss_pred ----HHHHHHhC---CCCCEEEEECCCCC------------------CHHHHHHHHHhhc
Confidence 33333332 24889999999998 9999999988653
No 336
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.91 E-value=1.9e-09 Score=100.53 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~---- 158 (482)
....++++.|..|+|||+|+|.++........+. ...|.|....... -+.++.++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k-------------~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK-------------SKNGKTQAINHFH---VGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcC-------------CCCccceeeeeee---ccceEEEEecCCccccc
Confidence 3457899999999999999999986532111100 1345555444433 3678999999992
Q ss_pred ------hhhHHHHHhhc---ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHH-HHHHHHHH
Q 011581 159 ------ADYVKNMITGA---AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELL-QLVELEVR 228 (482)
Q Consensus 159 ------~~~~~~~~~~~---~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~-~~i~~~i~ 228 (482)
.++.+.+..++ .+.-.+.+++|++.++.+.+...+.++...++| +.+|+||||+...-... ......+.
T Consensus 198 y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~i~ 276 (320)
T KOG2486|consen 198 YGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLNIK 276 (320)
T ss_pred CCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC-eEEeeehhhhhhhccccccCccccce
Confidence 34444444443 345568889999999999999999999999999 88999999986532100 00001111
Q ss_pred HHHhhc--CCCCCCccEEEcchhhhH
Q 011581 229 ELLSSY--EFPGDDVPIISGSALLAL 252 (482)
Q Consensus 229 ~~l~~~--~~~~~~~~~i~~Sa~~g~ 252 (482)
..+..+ ++-....||+.+|+.++.
T Consensus 277 ~~f~~l~~~~f~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 277 INFQGLIRGVFLVDLPWIYVSSVTSL 302 (320)
T ss_pred eehhhccccceeccCCceeeeccccc
Confidence 111111 111235789999999887
No 337
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.88 E-value=7.6e-09 Score=86.36 Aligned_cols=146 Identities=24% Similarity=0.259 Sum_probs=92.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHAD 160 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~ 160 (482)
....++|.++|--++||||++.+|.+. |....-+..|.. ....++. ..++++||..|+..
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sE---------------D~~hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr~ 74 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSE---------------DPRHLTPTNGFN----TKKVEYDGTFHLNVWDIGGQRG 74 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccC---------------ChhhccccCCcc----eEEEeecCcEEEEEEecCCccc
Confidence 356789999999999999999999653 111111222332 2233334 48899999999988
Q ss_pred hHHHHHhhcccCCeEEEeecCCCC-ChHHHHHHH-HHH---HHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADG-PMPQTKEHI-LLA---KQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g-~~~~t~e~l-~~~---~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
...-+..++...|++|+|||+++. .+..+-+++ +++ +...+| +.++-||-|++...... ++..-+.-.+
T Consensus 75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp-vlIfankQdlltaa~~e-----eia~klnl~~ 148 (185)
T KOG0074|consen 75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP-VLIFANKQDLLTAAKVE-----EIALKLNLAG 148 (185)
T ss_pred cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHhhcchH-----HHHHhcchhh
Confidence 888888888999999999998763 223333333 333 334678 77788999987632211 1221121112
Q ss_pred CCCCCccEEEcchhhhH
Q 011581 236 FPGDDVPIISGSALLAL 252 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~ 252 (482)
+......+-.+|++++.
T Consensus 149 lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 149 LRDRSWHIQECSALSLE 165 (185)
T ss_pred hhhceEEeeeCcccccc
Confidence 22234556677888765
No 338
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.87 E-value=4.5e-09 Score=105.06 Aligned_cols=149 Identities=20% Similarity=0.176 Sum_probs=89.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..+.+++++||.+|+|||++++.++....+.-...|. |-..-..++++.-..|.++||||.-+-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFT----------------TksL~vGH~dykYlrwQViDTPGILD~ 228 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT----------------TKLLLVGHLDYKYLRWQVIDTPGILDR 228 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccc----------------cchhhhhhhhhheeeeeecCCccccCc
Confidence 3457899999999999999999887654333332222 333334456666678999999994332
Q ss_pred ---HHH---H--Hhhcc-cCCeEEEeecCCC--CC--hHHHHHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHH
Q 011581 162 ---VKN---M--ITGAA-QMDGAILVVSGAD--GP--MPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELE 226 (482)
Q Consensus 162 ---~~~---~--~~~~~-~~D~~ilVvda~~--g~--~~~t~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~ 226 (482)
..+ | +.++. .--+++++.|.++ |. ..|..-+ .-++- .+.| +|+|+||+|....++..+.-. +
T Consensus 229 plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLf-hsIKpLFaNK~-~IlvlNK~D~m~~edL~~~~~-~ 305 (620)
T KOG1490|consen 229 PEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLY-HSIKPLFANKV-TILVLNKIDAMRPEDLDQKNQ-E 305 (620)
T ss_pred chhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHH-HHhHHHhcCCc-eEEEeecccccCccccCHHHH-H
Confidence 111 1 12222 2235888999886 32 2333221 22221 2555 889999999988665443322 3
Q ss_pred HHHHHhhcCCCCCCccEEEcchhhhHH
Q 011581 227 VRELLSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 227 i~~~l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
+.+.+..- .+++++.+|+.+..+
T Consensus 306 ll~~~~~~----~~v~v~~tS~~~eeg 328 (620)
T KOG1490|consen 306 LLQTIIDD----GNVKVVQTSCVQEEG 328 (620)
T ss_pred HHHHHHhc----cCceEEEecccchhc
Confidence 33333322 258999999987653
No 339
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=6e-08 Score=95.21 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=101.1
Q ss_pred HhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe--EEE
Q 011581 74 AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYA 151 (482)
Q Consensus 74 ~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~ 151 (482)
...++..++.-.+++.++|..|.|||||+|.|+........ ..+..........++......++.++. .++
T Consensus 10 q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~iee~g~~l~Lt 82 (366)
T KOG2655|consen 10 QVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIEENGVKLNLT 82 (366)
T ss_pred HHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeecCCCeEEeeE
Confidence 33555566677899999999999999999999876221111 111222233334555555555555554 567
Q ss_pred EEeCCCchhhHHH-------------H-Hhh-----------cc--cCCeEEEeecCC-CCChHHHHHHHHHHHHcCCCc
Q 011581 152 HVDCPGHADYVKN-------------M-ITG-----------AA--QMDGAILVVSGA-DGPMPQTKEHILLAKQVGVPN 203 (482)
Q Consensus 152 liDtPG~~~~~~~-------------~-~~~-----------~~--~~D~~ilVvda~-~g~~~~t~e~l~~~~~~~ip~ 203 (482)
++||||+.|+..+ . ..+ .. ..+++++.|..+ +|+.+.+.+.++.+.. .+.
T Consensus 83 vidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vN- 160 (366)
T KOG2655|consen 83 VIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVN- 160 (366)
T ss_pred EeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-ccc-
Confidence 9999996554111 1 111 11 568999999876 4799999888766654 455
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 204 MVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 204 iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
+|-|+-|.|....+++.. ++..+.+.++..++
T Consensus 161 iIPVI~KaD~lT~~El~~-~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 161 LIPVIAKADTLTKDELNQ-FKKRIRQDIEEHNI 192 (366)
T ss_pred ccceeeccccCCHHHHHH-HHHHHHHHHHHcCc
Confidence 788999999999766554 45577777777654
No 340
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.86 E-value=5.2e-08 Score=82.57 Aligned_cols=161 Identities=22% Similarity=0.176 Sum_probs=103.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceee-eeeeEeecC---CeEEEEEeCCCchh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN-TATVEYETE---NRHYAHVDCPGHAD 160 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~---~~~i~liDtPG~~~ 160 (482)
..+|+++|.-++|||.++.+|+......|.. ..-|++ +....++++ ...+.|.||.|..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e----------------~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~ 72 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTE----------------LHPTIEDIYVASVETDRGAREQLRLYDTAGLQG 72 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCc----------------cccchhhheeEeeecCCChhheEEEeecccccC
Confidence 4689999999999999999998654333321 111221 222233332 24688999999888
Q ss_pred h-HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH-----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 161 Y-VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK-----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 161 ~-~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+ ...-..++..+|+.+||.|..+....|-.+.+..-. ...+| ++|..||+|+.++.+..-.+ .+...
T Consensus 73 ~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~d~----A~~Wa-- 145 (198)
T KOG3883|consen 73 GQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDMDV----AQIWA-- 145 (198)
T ss_pred chhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCHHH----HHHHH--
Confidence 8 444456678899999999998866666555553221 12567 88889999997643322211 11111
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR 288 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~ 288 (482)
..+.+..+.+++.... .+.+.+..|...+..|+.
T Consensus 146 --~rEkvkl~eVta~dR~------------------sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 146 --KREKVKLWEVTAMDRP------------------SLYEPFTYLASRLHQPQS 179 (198)
T ss_pred --hhhheeEEEEEeccch------------------hhhhHHHHHHHhccCCcc
Confidence 1235777888887765 456667777776665544
No 341
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.83 E-value=9.7e-08 Score=99.95 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=70.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
..+|+++|.+|+|||||+|.|++....... ....++| ..........+..+.+|||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vs--------------s~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTD--------------AFGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcccccccc--------------CCCCCce-EEEEEEEEECCceEEEEECCCCCccccc
Confidence 478999999999999999999875211110 0112222 2323334456788999999996542
Q ss_pred ---HHH----HHhhcc--cCCeEEEeecCCCC-ChHHHHHHHHHHHH-cC---CCcEEEEEecCCCCC
Q 011581 162 ---VKN----MITGAA--QMDGAILVVSGADG-PMPQTKEHILLAKQ-VG---VPNMVVFLNKQDQVD 215 (482)
Q Consensus 162 ---~~~----~~~~~~--~~D~~ilVvda~~g-~~~~t~e~l~~~~~-~~---ip~iivviNK~D~~~ 215 (482)
... ....+. .+|++|+|...... ........++.+.. +| ..++|||+|..|...
T Consensus 183 q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 183 QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 112 222333 47988888765432 21233334443332 22 367899999999875
No 342
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.81 E-value=3.7e-08 Score=77.77 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=66.9
Q ss_pred CCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEcccc
Q 011581 291 DLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQ 366 (482)
Q Consensus 291 ~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~ 366 (482)
+.||.+.|..+...++.|.+.++||.+|+|+.||.|.+.. + ...++..|...+ .++++|.|||++++. .
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~--~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~----g 73 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-E--EKIKITELRVFNNGEVVTADTVTAGDIAILT----G 73 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-C--cEEEeceeEEEeCCCeEECcEECCCCEEEEE----C
Confidence 3689999999999999999999999999999999997654 2 245777777653 578999999999986 4
Q ss_pred ccCcccCeEEeC
Q 011581 367 KADIQRGMVLAK 378 (482)
Q Consensus 367 ~~~i~~G~vl~~ 378 (482)
..+++.||+|++
T Consensus 74 l~~~~~Gdtl~~ 85 (85)
T cd03690 74 LKGLRVGDVLGD 85 (85)
T ss_pred CCCCcCccccCC
Confidence 567889999863
No 343
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.80 E-value=2.8e-08 Score=88.64 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=89.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCc---ccccccCChhhhcCCce---eeee-eeEe--------------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPK---KYDEIDAAPEERARGIT---INTA-TVEY-------------- 143 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~---~~~~~d~~~~e~~~g~T---i~~~-~~~~-------------- 143 (482)
.+.|.+.|++|||||+|+.+++..+.+.-+..-. .+...|.....+..|.. +.+. ..+.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999998775433110000 00001111111101211 1111 0000
Q ss_pred ecCCeEEEEEeCCCchhhHHHHHhhcccCC-eEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHH-HH
Q 011581 144 ETENRHYAHVDCPGHADYVKNMITGAAQMD-GAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL-LQ 221 (482)
Q Consensus 144 ~~~~~~i~liDtPG~~~~~~~~~~~~~~~D-~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~-~~ 221 (482)
......+.||...| ...... .....| .-|+|+|..+|..-.-+-+-.+.+ - =++|+||.|+...-+. .+
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~~----a-DllVInK~DLa~~v~~dle 163 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK----A-DLLVINKTDLAPYVGADLE 163 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCceeE----e-eEEEEehHHhHHHhCccHH
Confidence 11224788999988 221111 111245 889999999887533221100111 1 1578999999864322 12
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 222 LVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+.+-.++.. .+.||+.+|+++|+ |++++++++...
T Consensus 164 ----vm~~da~~~n---p~~~ii~~n~ktg~------------------G~~~~~~~i~~~ 199 (202)
T COG0378 164 ----VMARDAKEVN---PEAPIIFTNLKTGE------------------GLDEWLRFIEPQ 199 (202)
T ss_pred ----HHHHHHHHhC---CCCCEEEEeCCCCc------------------CHHHHHHHHHhh
Confidence 2222333332 36899999999998 899999888653
No 344
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.79 E-value=1.3e-07 Score=72.37 Aligned_cols=78 Identities=26% Similarity=0.314 Sum_probs=62.2
Q ss_pred CCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcc
Q 011581 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQ 371 (482)
Q Consensus 292 ~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 371 (482)
.|-++.|...|....+. ++.|+|..|+|++|..| .|. .-.+|++||.++++++.|.+||.|++.+.+.. ++.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~-~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~ 74 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGR-KIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIK 74 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSS-CEEEEEEEEETTEEESEEETT-EEEEEEET----TB-
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCE-EEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCC
Confidence 36678888888888888 77779999999999999 443 36799999999999999999999999999854 899
Q ss_pred cCeEEe
Q 011581 372 RGMVLA 377 (482)
Q Consensus 372 ~G~vl~ 377 (482)
.||+|.
T Consensus 75 eGDiLy 80 (81)
T PF14578_consen 75 EGDILY 80 (81)
T ss_dssp TT-EEE
T ss_pred CCCEEe
Confidence 999983
No 345
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=2.3e-08 Score=86.03 Aligned_cols=116 Identities=22% Similarity=0.212 Sum_probs=84.3
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
--+..-+++++|--|+|||||++.|-... .+. .-.|.....-.+...+-.++-+|..||..
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDr--l~q-----------------hvPTlHPTSE~l~Ig~m~ftt~DLGGH~q 76 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDR--LGQ-----------------HVPTLHPTSEELSIGGMTFTTFDLGGHLQ 76 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHcccc--ccc-----------------cCCCcCCChHHheecCceEEEEccccHHH
Confidence 34556789999999999999999884210 000 01133333333455678899999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHH----cCCCcEEEEEecCCCCCh
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~----~~ip~iivviNK~D~~~~ 216 (482)
-..-+..++..+|++|++||+-+.. ....+++++.+.. ..+| +++..||+|.+.+
T Consensus 77 Arr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 77 ARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred HHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 8888888899999999999998743 3455666655543 3688 7889999999874
No 346
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.77 E-value=1.5e-08 Score=91.38 Aligned_cols=147 Identities=23% Similarity=0.208 Sum_probs=91.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee--eeEee-cCCeEEEEEeCCCchh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA--TVEYE-TENRHYAHVDCPGHAD 160 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~--~~~~~-~~~~~i~liDtPG~~~ 160 (482)
..++++++|...+|||.|+-.++. +.++++....+. +.. ..... .....+.+|||.|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~----------------~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqed 65 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT----------------NAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQED 65 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc----------------CcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcc
Confidence 357899999999999999877753 233443333222 111 12221 2334567999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHH---------HHH
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVE---------LEV 227 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~---------~~i 227 (482)
|.+-.--.+..+|.++++++..+...... ...+-..+. -++| +|+|.+|.|+-++....+.+. .+.
T Consensus 66 YDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g 144 (198)
T KOG0393|consen 66 YDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVP-IILVGTKADLRDDPSTLEKLQRQGLEPVTYEQG 144 (198)
T ss_pred cccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCC-EEEEeehHHhhhCHHHHHHHHhccCCcccHHHH
Confidence 97744446678999998888766433221 111112222 3788 899999999986443332222 234
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhH
Q 011581 228 RELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
.++.+++|. ..++.+||++..
T Consensus 145 ~~lA~~iga----~~y~EcSa~tq~ 165 (198)
T KOG0393|consen 145 LELAKEIGA----VKYLECSALTQK 165 (198)
T ss_pred HHHHHHhCc----ceeeeehhhhhC
Confidence 455555553 678999999887
No 347
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.76 E-value=7.1e-08 Score=75.87 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=62.9
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEccccccCc
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKADI 370 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i 370 (482)
...|.+++..++.|.+..+||.+|+|++||.|.+...++ ..+|..|...+ .++++|.|||++++. + ..++
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l~~~ 75 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGK--KERISRLLQPFADQYQEIPSLSAGNIGVIT--G--LKQT 75 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCC--EEEeeEEEEEECCCceECCeeCCCCEEEEE--C--CCCc
Confidence 456777777888999999999999999999998876543 46777776543 578999999999975 3 4669
Q ss_pred ccCeEEeC
Q 011581 371 QRGMVLAK 378 (482)
Q Consensus 371 ~~G~vl~~ 378 (482)
+.||+||.
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04092 76 RTGDTLVT 83 (83)
T ss_pred ccCCEEeC
Confidence 99999973
No 348
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.71 E-value=1.2e-07 Score=74.49 Aligned_cols=78 Identities=26% Similarity=0.206 Sum_probs=62.6
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCc
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADI 370 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i 370 (482)
...|.+++..++.|.+.++||.+|+|++||.|.+...++ ..+|..|... ..++++|.|||++.+. + ..++
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--~~~~ 75 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK--KERVGRLLRMHGKKQEEVEEAGAGDIGAVA--G--LKDT 75 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCc--EEEeeEEEEEcCCCceECCEeCCCCEEEEE--C--CCCC
Confidence 456777777788899999999999999999998887543 5677777654 3578999999999985 3 4568
Q ss_pred ccCeEEeC
Q 011581 371 QRGMVLAK 378 (482)
Q Consensus 371 ~~G~vl~~ 378 (482)
+.||+|++
T Consensus 76 ~~Gdtl~~ 83 (83)
T cd04088 76 ATGDTLCD 83 (83)
T ss_pred ccCCEeeC
Confidence 99999863
No 349
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.71 E-value=1.7e-07 Score=74.27 Aligned_cols=80 Identities=31% Similarity=0.409 Sum_probs=63.6
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCC-ccceeEEEEEeecc----cccceeecCCeEEEEEcccccc
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKA 368 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~-~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~ 368 (482)
|++.|.++...++.|.++++||.+|+|++||.|++...+ +....+|.+|...+ .+++++.|||++++. + ..
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--g--l~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--G--IE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--C--CC
Confidence 568888888888899999999999999999999887652 12245777775433 578999999999765 3 36
Q ss_pred CcccCeEEe
Q 011581 369 DIQRGMVLA 377 (482)
Q Consensus 369 ~i~~G~vl~ 377 (482)
+++.||+|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 788999986
No 350
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.68 E-value=3.4e-08 Score=95.14 Aligned_cols=80 Identities=26% Similarity=0.237 Sum_probs=54.5
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-----------------eEE
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-----------------RHY 150 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----------------~~i 150 (482)
|+++|.+|+|||||+|+|++.....+. ..+.|++.....+...+ ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n----------------~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN----------------YPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc----------------ccccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 589999999999999999975332222 23345444333332222 248
Q ss_pred EEEeCCCc-------hhhHHHHHhhcccCCeEEEeecCCC
Q 011581 151 AHVDCPGH-------ADYVKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 151 ~liDtPG~-------~~~~~~~~~~~~~~D~~ilVvda~~ 183 (482)
.++|+||. +......+..++.+|++++|||+..
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 99999993 2234456667789999999999863
No 351
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.67 E-value=2.8e-07 Score=72.97 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=63.8
Q ss_pred eeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec---ccccceeecCCeEEEEEccc-cccC
Q 011581 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF---QKTLDEAMAGDNVGLLLRGV-QKAD 369 (482)
Q Consensus 294 ~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~---~~~v~~a~aG~~v~l~l~~~-~~~~ 369 (482)
|.+.|.++...++.|.++.+||.+|+|+.||.+++...++ ..++..|... +.+++++.|||++++. .++ +..+
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~--~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~ 77 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGK--EYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKD 77 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCC--eEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCc
Confidence 4677888888888999999999999999999998876543 4566666644 3578999999999885 122 2357
Q ss_pred cccCeEEeC
Q 011581 370 IQRGMVLAK 378 (482)
Q Consensus 370 i~~G~vl~~ 378 (482)
+..||+|++
T Consensus 78 ~~~Gdtl~~ 86 (86)
T cd03699 78 ARVGDTITL 86 (86)
T ss_pred cccccEeeC
Confidence 889999974
No 352
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.65 E-value=2.3e-07 Score=73.17 Aligned_cols=69 Identities=30% Similarity=0.425 Sum_probs=56.6
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEccccccCcccCeEEeC
Q 011581 304 ITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAK 378 (482)
Q Consensus 304 v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 378 (482)
.++.|.+.++||.+|+|+.||.|++...++ ..+|..|...+ .++++|.|||++++. ...+++.||+||+
T Consensus 12 ~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~--~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~----gl~~~~~Gdtl~~ 84 (85)
T cd03689 12 PAHRDRIAFVRVCSGKFERGMKVKHVRLGK--EVRLSNPQQFFAQDRETVDEAYPGDIIGLV----NPGNFQIGDTLTE 84 (85)
T ss_pred CCCCcEEEEEEEECCEEcCCCEEEEcCCCC--EEEeeEeEEEecCCeeEcCEECCCCEEEEE----CCCCccccCEeeC
Confidence 567899999999999999999998776543 45677776543 578999999999996 4567889999984
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.3e-07 Score=96.35 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=99.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCC-CCCccc-------------ccccCChhhhcCCceee-----------
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGN-SAPKKY-------------DEIDAAPEERARGITIN----------- 137 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~-~~~~~~-------------~~~d~~~~e~~~g~Ti~----------- 137 (482)
+.+.+|+|.|.+++||||++|+++....-.+. ++.... ...+.. .|...-.|++
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCC-cccccHHHHhHHHHhcCcccc
Confidence 45789999999999999999999976322211 111100 000100 0100000110
Q ss_pred -----eeeeEeecC-----CeEEEEEeCCCc---hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcE
Q 011581 138 -----TATVEYETE-----NRHYAHVDCPGH---ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204 (482)
Q Consensus 138 -----~~~~~~~~~-----~~~i~liDtPG~---~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~i 204 (482)
...+.+..+ ...+.++|.||. ..+........-.+|+.|||+.|....+...++++...... .|++
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kpni 264 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNI 264 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcE
Confidence 011112211 236889999993 45555555566789999999999887777777777666654 7889
Q ss_pred EEEEecCCCCChH-HHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHH
Q 011581 205 VVFLNKQDQVDDE-ELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 205 ivviNK~D~~~~~-~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
+|+.||.|...++ +..+.+..++.+ |+-..+....-.++++|+..-.+
T Consensus 265 FIlnnkwDasase~ec~e~V~~Qi~e-L~v~~~~eA~DrvfFVS~~e~l~ 313 (749)
T KOG0448|consen 265 FILNNKWDASASEPECKEDVLKQIHE-LSVVTEKEAADRVFFVSAKEVLN 313 (749)
T ss_pred EEEechhhhhcccHHHHHHHHHHHHh-cCcccHhhhcCeeEEEeccchhh
Confidence 9999999987643 445555555442 22222222234578888765444
No 354
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.6e-07 Score=88.93 Aligned_cols=90 Identities=24% Similarity=0.260 Sum_probs=57.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeE-------ee----cCCeEEEEE
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE-------YE----TENRHYAHV 153 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~-------~~----~~~~~i~li 153 (482)
.++++|+|-+|+|||||+|+|+......++.+|.+. |...|+.--.. .. +. .-.-.+.|+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TI--------ePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~v 72 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTI--------EPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFV 72 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccc--------cCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEE
Confidence 468999999999999999999987655555555421 11111110000 00 00 001236799
Q ss_pred eCCCc-------hhhHHHHHhhcccCCeEEEeecCCC
Q 011581 154 DCPGH-------ADYVKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 154 DtPG~-------~~~~~~~~~~~~~~D~~ilVvda~~ 183 (482)
|.+|. +-.-...+.-++.+|+++.|||+..
T Consensus 73 DIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 73 DIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 99993 3345666777899999999999973
No 355
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.63 E-value=3.8e-07 Score=82.92 Aligned_cols=146 Identities=16% Similarity=0.209 Sum_probs=95.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~~~~ 163 (482)
..+|.++|.+|+|||++=..+...... ..-+..|-||+..+.+..+-+ -.+.+||+.|++.|.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a---------------~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA---------------RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh---------------hhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 357999999999999988777643111 112345668887776665544 5678999999999988
Q ss_pred HHHhh-----cccCCeEEEeecCCCCChHHHHHHHHHH----HHc-CCCcEEEEEecCCCCChH---HHHHHHHHHHHHH
Q 011581 164 NMITG-----AAQMDGAILVVSGADGPMPQTKEHILLA----KQV-GVPNMVVFLNKQDQVDDE---ELLQLVELEVREL 230 (482)
Q Consensus 164 ~~~~~-----~~~~D~~ilVvda~~g~~~~t~e~l~~~----~~~-~ip~iivviNK~D~~~~~---~~~~~i~~~i~~~ 230 (482)
+..+. .+..++.++|.|+.......+.++.+-+ ... -.-++++.+.|||++..+ ..++..+..++.+
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~ 148 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRL 148 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHh
Confidence 87763 4578999999999987665555555433 222 222377889999998732 2343333233332
Q ss_pred HhhcCCCCCCccEEEcchhh
Q 011581 231 LSSYEFPGDDVPIISGSALL 250 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~ 250 (482)
-+.+ ....+|+|-+.
T Consensus 149 s~~~-----~~~~f~TsiwD 163 (295)
T KOG3886|consen 149 SRPL-----ECKCFPTSIWD 163 (295)
T ss_pred cccc-----cccccccchhh
Confidence 2211 25567777654
No 356
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.58 E-value=5e-07 Score=83.07 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=64.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh--
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY-- 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~-- 161 (482)
..-+|+++|.+.+|||||+..++....+.....| .|.......+++++-.+.++|.||..+-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCcccccccc
Confidence 4678999999999999999999876444333222 2455555567778999999999995332
Q ss_pred -----HHHHHhhcccCCeEEEeecCCCCC
Q 011581 162 -----VKNMITGAAQMDGAILVVSGADGP 185 (482)
Q Consensus 162 -----~~~~~~~~~~~D~~ilVvda~~g~ 185 (482)
-++.++.++.+|++++|.||+...
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcch
Confidence 345566677899999999998754
No 357
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.57 E-value=5.5e-07 Score=70.39 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=57.6
Q ss_pred EEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcc
Q 011581 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQ 371 (482)
Q Consensus 296 ~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~ 371 (482)
..|..+...+. |.+..+||.+|+|++||.|++...++ ..+|..|... ..+++++.|||++++. ++ . ++
T Consensus 3 a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~--~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~--g~--~-~~ 74 (81)
T cd04091 3 GLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGK--KVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI--D-CA 74 (81)
T ss_pred EEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCC--EEEEeEEEEEeCCCceEccEECCCCEEEEE--CC--C-cc
Confidence 44445544444 99999999999999999998887654 5677777654 3578999999999964 33 4 89
Q ss_pred cCeEEeC
Q 011581 372 RGMVLAK 378 (482)
Q Consensus 372 ~G~vl~~ 378 (482)
.||+|++
T Consensus 75 ~Gdtl~~ 81 (81)
T cd04091 75 SGDTFTD 81 (81)
T ss_pred cCCEecC
Confidence 9999863
No 358
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.52 E-value=8.6e-07 Score=75.43 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=100.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhh--cCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER--ARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~--~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
-.++|+++|....|||||+-...+.. .++|. ..|+..--....+....-.+.+||..|+++|
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~----------------~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~ 82 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNE----------------YDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREF 82 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcch----------------hHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhh
Confidence 45789999999999999998876531 22222 3333332223333333455779999999998
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHcC---CCcEEEEEecCCCCC--hHHHHHHHHHHHHHHHhhcC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVG---VPNMVVFLNKQDQVD--DEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~~---ip~iivviNK~D~~~--~~~~~~~i~~~i~~~l~~~~ 235 (482)
....--+...+-++++++|-+.... .-.++..++++.++ +| |++.+|-|..- +.+..+.+..+-+.+.+-.
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP--ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m- 159 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP--ILVGTKYDLFIDLPPELQETISRQARKYAKVM- 159 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce--EEeccchHhhhcCCHHHHHHHHHHHHHHHHHh-
Confidence 7666555567778899999887554 33466667787765 56 57899999642 4555666666777777654
Q ss_pred CCCCCccEEEcchhhhH
Q 011581 236 FPGDDVPIISGSALLAL 252 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~ 252 (482)
+.+.++.|+....
T Consensus 160 ----nAsL~F~Sts~sI 172 (205)
T KOG1673|consen 160 ----NASLFFCSTSHSI 172 (205)
T ss_pred ----CCcEEEeeccccc
Confidence 3678999988777
No 359
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.51 E-value=5.8e-07 Score=80.65 Aligned_cols=128 Identities=18% Similarity=0.254 Sum_probs=75.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeee------------------------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATV------------------------ 141 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~------------------------ 141 (482)
.-+.++|+.|+||||.++.+.......|+... -.++|...+.-..-.+++....
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~--vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVH--VVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeE--EeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 34678999999999999999877666665321 1123333222222222222110
Q ss_pred ---Eeec-----C--CeEEEEEeCCCc------hhhHHHHHhhcccC---CeEEEeecCCCC-----ChHHHHHHHHHHH
Q 011581 142 ---EYET-----E--NRHYAHVDCPGH------ADYVKNMITGAAQM---DGAILVVSGADG-----PMPQTKEHILLAK 197 (482)
Q Consensus 142 ---~~~~-----~--~~~i~liDtPG~------~~~~~~~~~~~~~~---D~~ilVvda~~g-----~~~~t~e~l~~~~ 197 (482)
+++| . ...+.++|+||+ ..-.++.+..+.+- -++++++|+.-- ...-....+..+.
T Consensus 82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi 161 (273)
T KOG1534|consen 82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI 161 (273)
T ss_pred HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH
Confidence 0011 1 456899999994 44467777766553 257778876521 1122233344455
Q ss_pred HcCCCcEEEEEecCCCCCh
Q 011581 198 QVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 198 ~~~ip~iivviNK~D~~~~ 216 (482)
.+.+|+ |=|++|||+...
T Consensus 162 ~lE~P~-INvlsKMDLlk~ 179 (273)
T KOG1534|consen 162 SLEVPH-INVLSKMDLLKD 179 (273)
T ss_pred HhcCcc-hhhhhHHHHhhh
Confidence 678995 578999999864
No 360
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.51 E-value=4.3e-07 Score=80.49 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=64.4
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
...+..+|++++|+|+.++...+..+....+...+.| +++|+||+|+.+.++. + +...+.+.. ..++++
T Consensus 7 ~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~~~-~----~~~~~~~~~-----~~~~~~ 75 (156)
T cd01859 7 RRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKK-LLIVLNKADLVPKEVL-E----KWKSIKESE-----GIPVVY 75 (156)
T ss_pred HHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCc-EEEEEEhHHhCCHHHH-H----HHHHHHHhC-----CCcEEE
Confidence 3344569999999999887766666665556666888 8899999999764322 1 111222221 257899
Q ss_pred cchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 246 GSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 246 ~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+||+++. |+.+|++.+.+.+|
T Consensus 76 iSa~~~~------------------gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERL------------------GTKILRRTIKELAK 96 (156)
T ss_pred EEccccc------------------cHHHHHHHHHHHHh
Confidence 9999998 89999999988765
No 361
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.40 E-value=1.4e-06 Score=89.13 Aligned_cols=113 Identities=24% Similarity=0.211 Sum_probs=74.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhh---cCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER---ARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~---~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
+..++|+++|.-|+|||+|+-+|+... +..+. -.-++|- ..+.-+.....++||+-..
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~ee----------------f~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~ 67 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEE----------------FVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDS 67 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhh----------------ccccccccCCccccC---CccCcCcCceEEEeccccc
Confidence 457899999999999999999998641 11111 1112221 1122233447899999777
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCCh--HHHHHHHHHHHHc-----CCCcEEEEEecCCCCC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPM--PQTKEHILLAKQV-----GVPNMVVFLNKQDQVD 215 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~~-----~ip~iivviNK~D~~~ 215 (482)
+-.......++.||++++|.+.++..+ ......+=+.+.+ ++| +|+|.||+|...
T Consensus 68 ~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~ 129 (625)
T KOG1707|consen 68 DDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGD 129 (625)
T ss_pred chhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCcc
Confidence 666667788899999999998776322 2222222233333 578 999999999876
No 362
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.40 E-value=7.7e-07 Score=80.23 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=68.7
Q ss_pred CCCc-hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 155 CPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 155 tPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
-||| .+...++...+..+|++++|+|+.++......+.+..+ .+.| .++|+||+|+.+.++.. +..++++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~-~ilVlNK~Dl~~~~~~~-----~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKP-RIIVLNKADLADPKKTK-----KWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCC-EEEEEehhhcCChHHHH-----HHHHHHHh
Confidence 4787 55677888889999999999999877655444433332 2566 78999999997643221 12223322
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
. ..+++++||+++. |+++|++.+...++
T Consensus 74 ~-----~~~vi~iSa~~~~------------------gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 K-----GEKVLFVNAKSGK------------------GVKKLLKAAKKLLK 101 (171)
T ss_pred c-----CCeEEEEECCCcc------------------cHHHHHHHHHHHHH
Confidence 2 2467899999987 88888888887654
No 363
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.39 E-value=7.7e-07 Score=78.99 Aligned_cols=91 Identities=16% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
.+..+..+|++++|+|+.++.........+.+... +.| +|+|+||+|+.+.++... .+..+-+. + .+-
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~~~~~~----~~~~~~~~--~---~~~ 71 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVPTWVTAR----WVKILSKE--Y---PTI 71 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC-EEEEEEchhcCCHHHHHH----HHHHHhcC--C---cEE
Confidence 45678899999999999987665555555555543 377 789999999986543211 12222121 1 122
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++||+.+. |+.+|++.+.+++
T Consensus 72 ~~~iSa~~~~------------------~~~~L~~~l~~~~ 94 (157)
T cd01858 72 AFHASINNPF------------------GKGSLIQLLRQFS 94 (157)
T ss_pred EEEeeccccc------------------cHHHHHHHHHHHH
Confidence 5889999887 7788888887653
No 364
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.36 E-value=6.7e-07 Score=79.41 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=39.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
...+|+++|.+|+|||||+|+|.+... .......|.|........ +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV---------------CKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc---------------eeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 467899999999999999999986411 122334566665443322 345899999993
No 365
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.36 E-value=5.9e-07 Score=80.88 Aligned_cols=57 Identities=23% Similarity=0.425 Sum_probs=42.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
...+++++|.+|+|||||+|+|++... .......|+|.......+ +..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~---------------~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA---------------CNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc---------------ceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 457999999999999999999986421 222345678877665544 246899999993
No 366
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.35 E-value=3.6e-06 Score=85.76 Aligned_cols=125 Identities=24% Similarity=0.221 Sum_probs=70.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---------hhhcCCceeeeeeeE-------------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---------EERARGITINTATVE------------- 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~~~------------- 142 (482)
...|+++|..|+||||++..|.......|....-- ..|... .....++.+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV--~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV--CADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--cCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 45789999999999999999987665555321110 112111 011123322211000
Q ss_pred eecCCeEEEEEeCCCchhh----HHHHHhh--cccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCCC
Q 011581 143 YETENRHYAHVDCPGHADY----VKNMITG--AAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~----~~~~~~~--~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~~ 215 (482)
+...++.+.||||||.... ..++... ...+|-++||+|+..|... ...+.... ..++. -+++||+|...
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~--g~IlTKlD~~a 253 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVG--SVIITKLDGHA 253 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCc--EEEEECccCCC
Confidence 0113678999999995433 3333222 2357899999999876443 22222222 23444 46789999764
No 367
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.34 E-value=5.2e-06 Score=74.87 Aligned_cols=124 Identities=22% Similarity=0.226 Sum_probs=68.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh---------hhcCCceeeeeee-------------Eee
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE---------ERARGITINTATV-------------EYE 144 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~-------------~~~ 144 (482)
-+++.|++|+||||++-.|.......|..... -..|.... -...|+.+..... ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~--i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLL--VAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE--EEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999998766555431110 00111100 0112222211100 011
Q ss_pred cCCeEEEEEeCCCchhh----HHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 145 TENRHYAHVDCPGHADY----VKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~----~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..++.+.|+||||...+ ...+.... ...|.+++|+|+..+... ...........++. -+++||+|...
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~~~~~--~viltk~D~~~ 153 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA-VNQAKAFNEALGIT--GVILTKLDGDA 153 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH-HHHHHHHHhhCCCC--EEEEECCcCCC
Confidence 23567899999997533 33322222 248999999999654322 22333333455654 46779999876
No 368
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.33 E-value=1.7e-06 Score=79.45 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=54.0
Q ss_pred CeEEEEEeC-CCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 147 NRHYAHVDC-PGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 147 ~~~i~liDt-PG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.+.+.++|| +|.+.|.+-+. ..+|.+|+|+|.+.......++.-+++..++++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 477899999 78777765553 468999999999987777778888888999988899999999964
No 369
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.1e-05 Score=78.29 Aligned_cols=136 Identities=23% Similarity=0.206 Sum_probs=88.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhH---HhcCCCCCccc--ccccCChhhhcCCceeeeee-eEee--------------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMAL---ASLGNSAPKKY--DEIDAAPEERARGITINTAT-VEYE-------------- 144 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~---~~~g~~~~~~~--~~~d~~~~e~~~g~Ti~~~~-~~~~-------------- 144 (482)
.+-|.++|.-..||||+++.|+... ..+|......+ ..|....++...|.+.-... ..|.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 3569999999999999999998652 22333322211 22333344444554443221 1110
Q ss_pred ---cC---CeEEEEEeCCCchhhHHH-----------HHhhcccCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCcEEE
Q 011581 145 ---TE---NRHYAHVDCPGHADYVKN-----------MITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVV 206 (482)
Q Consensus 145 ---~~---~~~i~liDtPG~~~~~~~-----------~~~~~~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~iiv 206 (482)
.. -.+++||||||.-.-.++ ..=.+..+|.++|++|+.. .+...+.+.+..++...-+ +=|
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRV 216 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRV 216 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEE
Confidence 01 145899999995333222 2223457999999999986 6778899999988877665 668
Q ss_pred EEecCCCCChHHHHH
Q 011581 207 FLNKQDQVDDEELLQ 221 (482)
Q Consensus 207 viNK~D~~~~~~~~~ 221 (482)
|+||.|.++.++...
T Consensus 217 VLNKADqVdtqqLmR 231 (532)
T KOG1954|consen 217 VLNKADQVDTQQLMR 231 (532)
T ss_pred EeccccccCHHHHHH
Confidence 999999999766544
No 370
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.32 E-value=1e-05 Score=80.97 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=57.2
Q ss_pred eeeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-----------ChHHHHHHHHHHHH----cCCC
Q 011581 138 TATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-----------PMPQTKEHILLAKQ----VGVP 202 (482)
Q Consensus 138 ~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-----------~~~~t~e~l~~~~~----~~ip 202 (482)
.....+..++..+.+||..|+..+.+.+...+..++++|+|||.++- -.....+.+..+.. .+.|
T Consensus 174 i~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p 253 (342)
T smart00275 174 IQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS 253 (342)
T ss_pred eEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc
Confidence 33445666788899999999999999999999999999999999862 12334444443332 2567
Q ss_pred cEEEEEecCCCC
Q 011581 203 NMVVFLNKQDQV 214 (482)
Q Consensus 203 ~iivviNK~D~~ 214 (482)
+++++||.|+.
T Consensus 254 -iil~~NK~D~~ 264 (342)
T smart00275 254 -IILFLNKIDLF 264 (342)
T ss_pred -EEEEEecHHhH
Confidence 89999999975
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.31 E-value=1.8e-06 Score=79.21 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=65.5
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHH--HHHhhc
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVR--ELLSSY 234 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~--~~l~~~ 234 (482)
.+..|...+...+..+|++++|+|+.+.......+. .....+.| +++|+||+|+...+...+.+. .+. ...+..
T Consensus 20 ~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~ 95 (190)
T cd01855 20 DEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNP-VILVGNKIDLLPKDKNLVRIK-NWLRAKAAAGL 95 (190)
T ss_pred hHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCc-EEEEEEchhcCCCCCCHHHHH-HHHHHHHHhhc
Confidence 333356667777789999999999987543333222 12234666 889999999975332222121 111 111222
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++. ..+++++||++|+ |+++|++.|.+.++
T Consensus 96 ~~~--~~~i~~vSA~~~~------------------gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLK--PKDVILISAKKGW------------------GVEELINAIKKLAK 125 (190)
T ss_pred CCC--cccEEEEECCCCC------------------CHHHHHHHHHHHhh
Confidence 221 2368999999998 89999999988764
No 372
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.27 E-value=1.9e-05 Score=78.33 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=55.5
Q ss_pred eeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-----------hHHHHHHHHHHHH----cCCCc
Q 011581 139 ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-----------MPQTKEHILLAKQ----VGVPN 203 (482)
Q Consensus 139 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-----------~~~t~e~l~~~~~----~~ip~ 203 (482)
....|+.++..+.+||++|+....+.+......++++++|||.++-. ....++.+..+.. .+.|
T Consensus 152 ~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~p- 230 (317)
T cd00066 152 VETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTS- 230 (317)
T ss_pred eEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCC-
Confidence 33445667888999999999999999999999999999999998631 1233333332222 3667
Q ss_pred EEEEEecCCCC
Q 011581 204 MVVFLNKQDQV 214 (482)
Q Consensus 204 iivviNK~D~~ 214 (482)
+++++||.|+.
T Consensus 231 ill~~NK~D~f 241 (317)
T cd00066 231 IILFLNKKDLF 241 (317)
T ss_pred EEEEccChHHH
Confidence 89999999964
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.26 E-value=6.1e-07 Score=79.01 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..++++|++|+|||||+|.|++... ..+.. +....+.+..|.......+ . ....+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~i---------s~~~~rGkHTTt~~~l~~l--~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEI---------SEKTGRGKHTTTHRELFPL--P-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S-----------------------SEEEEEE--T-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhh---------hcccCCCcccCCCeeEEec--C-CCcEEEECCCCCcc
Confidence 5799999999999999999986521 11110 0011233334444444443 2 23689999998776
No 374
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.25 E-value=9.7e-06 Score=65.13 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=57.9
Q ss_pred EEEEeEEeeC-CCceEEEEEEEeeeeecCCEEEEecCC-------ccceeEEEEEeecc----cccceeecCCeEEEEEc
Q 011581 296 LAVEDVFSIT-GRGTVATGRVERGTIKVGETVDLVGLK-------ETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLR 363 (482)
Q Consensus 296 ~~I~~v~~v~-g~G~v~~G~v~sG~l~~g~~v~i~p~~-------~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~ 363 (482)
+.|..+...+ +.|.+.++||.+|+|+.||.+++...+ .....+|..|.... .++++|.|||+|++.
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~-- 80 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV-- 80 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE--
Confidence 4455555566 789999999999999999999887522 22246777876653 578999999999986
Q ss_pred cccccCcccCeEEe
Q 011581 364 GVQKADIQRGMVLA 377 (482)
Q Consensus 364 ~~~~~~i~~G~vl~ 377 (482)
+ ..+++.|++.+
T Consensus 81 g--~~~~~~g~~~~ 92 (93)
T cd03700 81 G--LDQLKSGTTAT 92 (93)
T ss_pred C--CccCceEeEec
Confidence 3 34577787654
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=7.3e-06 Score=81.06 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=71.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---------hhhcCCceeeeeee-------------E
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---------EERARGITINTATV-------------E 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~~-------------~ 142 (482)
...|+++|..|+||||++..|.......|....-. ..|... .....++.+..... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li--~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA--AGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE--ecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988765544321110 112110 11223333321100 0
Q ss_pred eecCCeEEEEEeCCCchhh-------HHHHHhhc-----ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 143 YETENRHYAHVDCPGHADY-------VKNMITGA-----AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~-------~~~~~~~~-----~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
....++.+.||||||.... +..+...+ ..+|..++|+|++.|..... +........++. -+++||
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~--giIlTK 268 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLT--GIILTK 268 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCC--EEEEEC
Confidence 0135678999999995432 22222221 25788999999997654332 222222334554 467899
Q ss_pred CCCCC
Q 011581 211 QDQVD 215 (482)
Q Consensus 211 ~D~~~ 215 (482)
+|...
T Consensus 269 lD~t~ 273 (318)
T PRK10416 269 LDGTA 273 (318)
T ss_pred CCCCC
Confidence 99654
No 376
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.24 E-value=3.2e-06 Score=82.29 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=68.0
Q ss_pred CCCch-hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 155 CPGHA-DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 155 tPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
-|||. +..+++...+..+|++++|+|+..+.........+.+ .+.| +|+|+||+|+.+.++.. ...+.++.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~~~~~-----~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADPAVTK-----QWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCHHHHH-----HHHHHHHH
Confidence 38874 4567778888999999999999876655444443333 2566 78999999997643221 12222322
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+ .+++++||.++. |+.+|++.+.+.++
T Consensus 76 ~~-----~~vi~iSa~~~~------------------gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 KG-----IKALAINAKKGK------------------GVKKIIKAAKKLLK 103 (276)
T ss_pred cC-----CeEEEEECCCcc------------------cHHHHHHHHHHHHH
Confidence 22 468999999987 78888888877654
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.24 E-value=6.2e-06 Score=79.86 Aligned_cols=127 Identities=22% Similarity=0.242 Sum_probs=71.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCC---hhh------hcCCceeeee-------ee------
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAA---PEE------RARGITINTA-------TV------ 141 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~e------~~~g~Ti~~~-------~~------ 141 (482)
+...|+++|++|+||||++..|.......|....-- ..|.+ ..+ ...|+.+... ..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li--~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA--AGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE--eCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 346789999999999999999987665554321100 11211 011 2233322110 00
Q ss_pred EeecCCeEEEEEeCCCchhhHHHHHh-------hc-----ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEe
Q 011581 142 EYETENRHYAHVDCPGHADYVKNMIT-------GA-----AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLN 209 (482)
Q Consensus 142 ~~~~~~~~i~liDtPG~~~~~~~~~~-------~~-----~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviN 209 (482)
.....++.+.||||||........+. .. ..+|..+||+|+..+.... .......+..++. -+++|
T Consensus 149 ~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~--g~IlT 225 (272)
T TIGR00064 149 KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL-EQAKVFNEAVGLT--GIILT 225 (272)
T ss_pred HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH-HHHHHHHhhCCCC--EEEEE
Confidence 00125678999999996543222221 11 1389999999998653322 1222223345555 45789
Q ss_pred cCCCCC
Q 011581 210 KQDQVD 215 (482)
Q Consensus 210 K~D~~~ 215 (482)
|+|...
T Consensus 226 KlDe~~ 231 (272)
T TIGR00064 226 KLDGTA 231 (272)
T ss_pred ccCCCC
Confidence 999865
No 378
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.23 E-value=1.9e-06 Score=76.29 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=42.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
....+++++|.+|+|||||+|.|++... .......|.|.......+. ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLK---------------LKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccc---------------ccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 3568899999999999999999986421 1123345667766555442 45999999994
No 379
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.22 E-value=1.1e-05 Score=70.79 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=62.8
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCc------cccc----c-cCC---hhhhcCCceeeeeee------------
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPK------KYDE----I-DAA---PEERARGITINTATV------------ 141 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~------~~~~----~-d~~---~~e~~~g~Ti~~~~~------------ 141 (482)
|+++|..|+|||||+..|.......|..... .... + +.. +.....+........
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 7899999999999999998776554431100 0000 0 000 000011111100000
Q ss_pred ----EeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 142 ----EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 142 ----~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
.....+..+.||||||... .....+..+|.+|+|+....+.....+.. ..+ ..-. ++++||+|
T Consensus 82 ~~~~~~~~~~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~-~~~---~~~~-~~~~~k~~ 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA-GIM---EIAD-IVVVNKAD 148 (148)
T ss_pred HHHHHHHhcCCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh-hHh---hhcC-EEEEeCCC
Confidence 0112367899999999653 33456778999999988773222222221 111 1222 57899998
No 380
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.22 E-value=3e-05 Score=70.30 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=60.1
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHH
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVEL 225 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~ 225 (482)
+.+.++|+|||+... ......+..+|.+++++...........+.++.++..+.+ +.+|+||+|.... .. .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~--~~----~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINKYDLNDE--IA----E 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc--hH----H
Confidence 567899999996432 2445566789999999999877667778888888888888 6789999997542 11 2
Q ss_pred HHHHHHhhcCC
Q 011581 226 EVRELLSSYEF 236 (482)
Q Consensus 226 ~i~~~l~~~~~ 236 (482)
++.++++.+++
T Consensus 162 ~~~~~~~~~~~ 172 (179)
T cd03110 162 EIEDYCEEEGI 172 (179)
T ss_pred HHHHHHHHcCC
Confidence 45556666553
No 381
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.21 E-value=8.3e-06 Score=74.61 Aligned_cols=126 Identities=20% Similarity=0.337 Sum_probs=70.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhh-------------------hcCCceeeeee-------
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE-------------------RARGITINTAT------- 140 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e-------------------~~~g~Ti~~~~------- 140 (482)
-.+|+|++|+||||.++-+.......|+....- ++|..... .+.|.--+-+.
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vV--NLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l 81 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVV--NLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYL 81 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEE--ecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHH
Confidence 357999999999999999988777777633221 11211100 01111100000
Q ss_pred --------eEeecCCeEEEEEeCCCc------hhhHHHHHhhcccCCeEEEe---ecCCC---CCh--HHHHHHHHHHHH
Q 011581 141 --------VEYETENRHYAHVDCPGH------ADYVKNMITGAAQMDGAILV---VSGAD---GPM--PQTKEHILLAKQ 198 (482)
Q Consensus 141 --------~~~~~~~~~i~liDtPG~------~~~~~~~~~~~~~~D~~ilV---vda~~---g~~--~~t~e~l~~~~~ 198 (482)
..++....++.++|+||+ .+-....++.+...|+-+.+ +|+-- ... ....-.+.-+..
T Consensus 82 ~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~ 161 (290)
T KOG1533|consen 82 EANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH 161 (290)
T ss_pred HhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh
Confidence 011223577999999995 44466677777767765544 44431 111 112222333445
Q ss_pred cCCCcEEEEEecCCCCC
Q 011581 199 VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 199 ~~ip~iivviNK~D~~~ 215 (482)
+..|| |=|+.|+|+..
T Consensus 162 melph-VNvlSK~Dl~~ 177 (290)
T KOG1533|consen 162 MELPH-VNVLSKADLLK 177 (290)
T ss_pred hcccc-hhhhhHhHHHH
Confidence 67886 47899999864
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=8.5e-06 Score=81.73 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=71.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCC---hhhh------cCCceeeeeee-------EeecCC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAA---PEER------ARGITINTATV-------EYETEN 147 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~---~~e~------~~g~Ti~~~~~-------~~~~~~ 147 (482)
...++++|++|+||||++..|..... ..|..... ....|.. ..|. ..|+.+..... .....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 35799999999999999999987643 22321100 0011221 1111 12333322111 012356
Q ss_pred eEEEEEeCCCch---hhHHHHHhhcc---cCCeEEEeecCCCCChHHHHHHHHHHHHc--------CCCcEEEEEecCCC
Q 011581 148 RHYAHVDCPGHA---DYVKNMITGAA---QMDGAILVVSGADGPMPQTKEHILLAKQV--------GVPNMVVFLNKQDQ 213 (482)
Q Consensus 148 ~~i~liDtPG~~---~~~~~~~~~~~---~~D~~ilVvda~~g~~~~t~e~l~~~~~~--------~ip~iivviNK~D~ 213 (482)
++++||||||.. ++....+..+. .++-.+||++++.+....+.-........ ++.. +++||+|.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~--~I~TKlDE 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAG--CILTKLDE 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCE--EEEecccc
Confidence 789999999965 33444444443 34556999999987665443322233322 2332 46799998
Q ss_pred CC
Q 011581 214 VD 215 (482)
Q Consensus 214 ~~ 215 (482)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 65
No 383
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.19 E-value=5.1e-06 Score=72.31 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
+.....+..+|++++|+|+.++...+..+..+.+... +.| +++|+||+|+.+.++.. +..+.++..+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~~~~~~-----~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK-NILLLNKADLLTEEQRK-----AWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc-EEEEEechhcCCHHHHH-----HHHHHHHhcC-----
Confidence 4566778899999999999988877766767777665 777 88999999997643321 2333444333
Q ss_pred ccEEEcchhhhHH
Q 011581 241 VPIISGSALLALE 253 (482)
Q Consensus 241 ~~~i~~Sa~~g~~ 253 (482)
.+++++||.++.+
T Consensus 72 ~~ii~iSa~~~~~ 84 (141)
T cd01857 72 IVVVFFSALKENA 84 (141)
T ss_pred CeEEEEEecCCCc
Confidence 4689999998864
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=98.19 E-value=6.9e-06 Score=81.54 Aligned_cols=125 Identities=22% Similarity=0.172 Sum_probs=70.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---h------hhcCCceeeeeee-------------E
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---E------ERARGITINTATV-------------E 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~------e~~~g~Ti~~~~~-------------~ 142 (482)
...|+++|.+|+||||++..|.......|....- ...|... . -...|+.+..... .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~l--i~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVI--AAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE--ecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 4679999999999999999998776555432110 0112110 0 1112222211000 0
Q ss_pred eecCCeEEEEEeCCCchh----hHHHHHhh--cccCCeEEEeecCCCCChHHHHHHHHHH-HHcCCCcEEEEEecCCCCC
Q 011581 143 YETENRHYAHVDCPGHAD----YVKNMITG--AAQMDGAILVVSGADGPMPQTKEHILLA-KQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~----~~~~~~~~--~~~~D~~ilVvda~~g~~~~t~e~l~~~-~~~~ip~iivviNK~D~~~ 215 (482)
....++.++||||||... +..++... ...+|..+||+|+..|- ...+.+... ...++. -+++||+|...
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~--giIlTKlD~~~ 293 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGID--GVILTKVDADA 293 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCC--EEEEeeecCCC
Confidence 112356799999999543 33332221 23689999999998753 222222222 345666 35789999865
No 385
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.19 E-value=2.7e-05 Score=73.30 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=54.0
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhH--HhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---CCeEEEEEeCC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMAL--ASLGNSAPKKYDEIDAAPEERARGITINTATVEYET---ENRHYAHVDCP 156 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~--~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtP 156 (482)
..+..-|+|+|..++|||||+|+|++.. -..+.. .....+|+- .+.... .+..+.++|||
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~-----------~~~~T~gi~----~~~~~~~~~~~~~v~~lDte 68 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDT-----------SQQTTKGIW----MWSVPFKLGKEHAVLLLDTE 68 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCC-----------CCCCccceE----EEeccccCCCcceEEEEecC
Confidence 4566789999999999999999998751 111110 011122322 222222 35789999999
Q ss_pred Cchhh------HHHHHhhccc--CCeEEEeecCCC
Q 011581 157 GHADY------VKNMITGAAQ--MDGAILVVSGAD 183 (482)
Q Consensus 157 G~~~~------~~~~~~~~~~--~D~~ilVvda~~ 183 (482)
|..+. ....+.++.. +|++|+.++...
T Consensus 69 G~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 69 GTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred CcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 95332 2233444444 899999988764
No 386
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.18 E-value=4.9e-06 Score=73.64 Aligned_cols=82 Identities=21% Similarity=0.125 Sum_probs=55.4
Q ss_pred CeEEEeecCCCCChHHHHHHH-HHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhh
Q 011581 173 DGAILVVSGADGPMPQTKEHI-LLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLA 251 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l-~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g 251 (482)
|++++|+|+.++......... ..+...+.| +|+|+||+|+.+.++..+.+ ..+ .... ..+++++||.+|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~~~~~~~~~----~~~-~~~~----~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKK-LILVLNKADLVPKEVLRKWL----AYL-RHSY----PTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCC-EEEEEechhcCCHHHHHHHH----HHH-HhhC----CceEEEEeccCC
Confidence 789999999886655544443 355566788 88999999998643322211 112 2111 246899999998
Q ss_pred HHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 252 LEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 252 ~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
. |+.+|++.+.+.
T Consensus 71 ~------------------gi~~L~~~i~~~ 83 (155)
T cd01849 71 Q------------------GIEKKESAFTKQ 83 (155)
T ss_pred c------------------ChhhHHHHHHHH
Confidence 8 788888887654
No 387
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=3.2e-06 Score=74.67 Aligned_cols=144 Identities=14% Similarity=0.042 Sum_probs=91.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec--CCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDtPG~~~ 160 (482)
...++++++|..+.||+|++++.+... + +..-...+-+......|.. ...++..|||.|++.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltge-------F---------e~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk 71 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGE-------F---------EKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK 71 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhccc-------c---------eecccCcceeEEeeeeeecccCcEEEEeeeccccee
Confidence 467899999999999999999986421 0 0001111122222333322 236789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc-CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV-GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~-~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
|......+.-+.-+|++++|......-+.. -|-.+++.. ++| |+++.||.|.....-..+ --.+..
T Consensus 72 ~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r~~k~k-----~v~~~r----- 140 (216)
T KOG0096|consen 72 KGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKVDIKARKVKAK-----PVSFHR----- 140 (216)
T ss_pred ecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccceeccccccccc-----cceeee-----
Confidence 987777777788899999999876554332 222333332 578 999999999865321111 011111
Q ss_pred CCCccEEEcchhhhHH
Q 011581 238 GDDVPIISGSALLALE 253 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~ 253 (482)
..++.++.+||+.+.|
T Consensus 141 kknl~y~~iSaksn~N 156 (216)
T KOG0096|consen 141 KKNLQYYEISAKSNYN 156 (216)
T ss_pred cccceeEEeecccccc
Confidence 2457789999987653
No 388
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.16 E-value=2.2e-05 Score=72.16 Aligned_cols=125 Identities=20% Similarity=0.239 Sum_probs=71.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh---h------hcCCceeeeee-------------eEe
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE---E------RARGITINTAT-------------VEY 143 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---e------~~~g~Ti~~~~-------------~~~ 143 (482)
..|+++|+.|+||||.+..|.......+....-- ..|.+.. | +.-|+...... ..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li--s~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI--SADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE--EESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee--cCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 3589999999999999999987765443321111 1122210 1 11222221110 011
Q ss_pred ecCCeEEEEEeCCCchhhH----HHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 144 ETENRHYAHVDCPGHADYV----KNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 144 ~~~~~~i~liDtPG~~~~~----~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..++.+++||||||...+. .++...+ ...+-++||+|++.+..... +........++..+ +++|+|...
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~~l--IlTKlDet~ 154 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGIDGL--ILTKLDETA 154 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTCEE--EEESTTSSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCceE--EEEeecCCC
Confidence 2245789999999954432 2222211 25788999999998754433 45555566678744 589999876
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.16 E-value=2.5e-06 Score=74.23 Aligned_cols=55 Identities=27% Similarity=0.359 Sum_probs=37.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
.+++++|.+|+|||||+|+|++.... ......|.|.+.....+ ++ .+.||||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~---------------~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKV---------------SVSATPGKTKHFQTIFL--TP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce---------------eeCCCCCcccceEEEEe--CC-CEEEEECCCc
Confidence 38999999999999999999854211 11223344554443333 22 5899999995
No 390
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.15 E-value=2.5e-05 Score=75.38 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=60.6
Q ss_pred hhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee-------------
Q 011581 78 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE------------- 144 (482)
Q Consensus 78 ~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~------------- 144 (482)
.+-|....++++|+|-+|+|||||+|+|+......+...|. ||+......+
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~----------------TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFC----------------TIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcc----------------eeccccceeecCchHHHHHHHhc
Confidence 34455567899999999999999999999764444443332 3333222211
Q ss_pred -cC---CeEEEEEeCCCc-------hhhHHHHHhhcccCCeEEEeecCCC
Q 011581 145 -TE---NRHYAHVDCPGH-------ADYVKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 145 -~~---~~~i~liDtPG~-------~~~~~~~~~~~~~~D~~ilVvda~~ 183 (482)
.. .-.+++.|.+|. +-.-...++-++.+|+++-||++..
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 11 124789999993 3345566777888999999998864
No 391
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.12 E-value=9.4e-05 Score=79.14 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=80.7
Q ss_pred hHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeeccccc
Q 011581 271 KIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTL 349 (482)
Q Consensus 271 gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~~v 349 (482)
-++++.+++...++ |.....---.+.|..+|+.+..|.++..+|..|+|+.|..+++...+.. +..+|.||+++++++
T Consensus 471 l~d~~~~~~~~~~~-~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v 549 (587)
T TIGR00487 471 LIDEIRAAMKGMLD-PEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDV 549 (587)
T ss_pred HHHHHHHHHHhccC-cceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccc
Confidence 34455555555443 3222222335677899998888999999999999999999999986542 246799999999999
Q ss_pred ceeecCCeEEEEEccccccCcccCeEEe
Q 011581 350 DEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 350 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
+++..|+-|++.+.+. .+++.||+|-
T Consensus 550 ~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 550 KEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred cEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 9999999999999864 7899999985
No 392
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.11 E-value=6.8e-06 Score=80.47 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=67.4
Q ss_pred CCCch-hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 155 CPGHA-DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 155 tPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
-|||. +-.+++...+..+|++|+|+|+..+......+...... +.| +++|+||+|+.+.... + +..+.++.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp-~iiVlNK~DL~~~~~~-~----~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKP-RLLILNKSDLADPEVT-K----KWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCC-EEEEEEchhcCCHHHH-H----HHHHHHHH
Confidence 48874 44667778889999999999998876655444433332 666 7899999999764221 1 22222322
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
. ..+++++|+.++. |+.+|++.+.+.++
T Consensus 79 ~-----~~~vi~vSa~~~~------------------gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 Q-----GIKALAINAKKGQ------------------GVKKILKAAKKLLK 106 (287)
T ss_pred c-----CCeEEEEECCCcc------------------cHHHHHHHHHHHHH
Confidence 2 2568999999887 77788887776553
No 393
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.11 E-value=3.6e-06 Score=77.16 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=43.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
..+++++|.+|+|||||+|+|++....... ...........|+|.+.....+.. .+.||||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~-------~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKK-------LKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccc-------cccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 358999999999999999999875321110 001112234567888876665532 5899999994
No 394
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.11 E-value=9.1e-06 Score=77.59 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=59.0
Q ss_pred hhcccCCeEEEeecCCCCC--hHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEE
Q 011581 167 TGAAQMDGAILVVSGADGP--MPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPII 244 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~--~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i 244 (482)
..++.+|.+++|+|+.+.. .....+.+..+...++| +++|+||+|+.+..+... +..+.++..+ .+++
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~~~~~~----~~~~~~~~~g-----~~v~ 101 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE-PIIVLNKIDLLDDEDMEK----EQLDIYRNIG-----YQVL 101 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECcccCCCHHHHH----HHHHHHHHCC-----CeEE
Confidence 4578899999999998644 23344445556667888 788999999976433221 2222333333 6799
Q ss_pred EcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 245 SGSALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 245 ~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
.+||++|. |+.+|++.+.
T Consensus 102 ~~SAktg~------------------gi~eLf~~l~ 119 (245)
T TIGR00157 102 MTSSKNQD------------------GLKELIEALQ 119 (245)
T ss_pred EEecCCch------------------hHHHHHhhhc
Confidence 99999998 7888887664
No 395
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=1.6e-05 Score=79.52 Aligned_cols=126 Identities=19% Similarity=0.194 Sum_probs=72.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---hhh------cCCceeeeeee---------Eee-c
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---EER------ARGITINTATV---------EYE-T 145 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e~------~~g~Ti~~~~~---------~~~-~ 145 (482)
...|+++|+.|+||||++..|.......|..... ...|... .++ ..|+.+....- .+. .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVgl--I~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF--ITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEE--EecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 3689999999999999999998766544432111 0112211 111 12222211100 001 1
Q ss_pred CCeEEEEEeCCCchh----hHHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 146 ENRHYAHVDCPGHAD----YVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 146 ~~~~i~liDtPG~~~----~~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+..++||||||... .+..+...+ ...|.++||+|++.+... ..+.+......++.. ++++|+|...
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~~~idg--lI~TKLDET~ 391 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIHIDG--IVFTKFDETA 391 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcCCCCCE--EEEEcccCCC
Confidence 246899999999532 333343333 346888999998754322 244555555567774 4579999875
No 396
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.05 E-value=0.00022 Score=78.45 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=81.7
Q ss_pred hHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeeccccc
Q 011581 271 KIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTL 349 (482)
Q Consensus 271 gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~~v 349 (482)
-++++-+++...++ |.....---.+.|.++|+++..|.|+..+|..|.|+.|..+.+...+.. +..+|.||+.++.++
T Consensus 673 l~d~~~~~~~~~l~-~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v 751 (787)
T PRK05306 673 LIDDVKAAMSGMLE-PEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDV 751 (787)
T ss_pred HHHHHHHHHhhccC-chhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCc
Confidence 34555555555443 3222222235778899999988999999999999999999999986643 256899999999999
Q ss_pred ceeecCCeEEEEEccccccCcccCeEEe
Q 011581 350 DEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 350 ~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
.++..|+-|+|.+.+. .+++.||+|-
T Consensus 752 ~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 752 KEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred cEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 9999999999999854 7899999985
No 397
>PRK12288 GTPase RsgA; Reviewed
Probab=98.04 E-value=4.6e-06 Score=83.44 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=40.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHh-cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALAS-LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.++++|.+|+|||||+|+|++.... .|.. .....+.+.+|.......+..+ ..||||||..+|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~i---------s~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDV---------SDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccc---------cCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4899999999999999999865221 1110 0111234455666555555333 359999998765
No 398
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00016 Score=69.84 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=87.3
Q ss_pred cceeeechhhHHHHHhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh--hhcCCceee
Q 011581 60 VTVTTTRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE--ERARGITIN 137 (482)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~--e~~~g~Ti~ 137 (482)
..+..+-......+.+.+.+.......-|+++|.-|+|||||++-|.....+... +.+.+....++ |+....|..
T Consensus 163 ~s~~li~d~g~~~d~a~~ll~~~tdf~VIgvlG~QgsGKStllslLaans~~~dy---r~yvFRpvS~Ea~E~~~~qt~~ 239 (491)
T KOG4181|consen 163 RSTPLIVDNGIFNDNARKLLHKTTDFTVIGVLGGQGSGKSTLLSLLAANSLDYDY---RQYVFRPVSPEADECIFAQTHK 239 (491)
T ss_pred CCcceeecccchhhHHHHHhhcCCCeeEEEeecCCCccHHHHHHHHhccChHHhh---HHHhcccCChhhhhhhccceec
Confidence 3333444444455666667776666677899999999999999988754221111 11111111222 222222222
Q ss_pred eee-------eEeecC-------CeEEEEEeCCCc---------hh--hHHHHHhhcccCCeEEEeecCCCCChHHHHHH
Q 011581 138 TAT-------VEYETE-------NRHYAHVDCPGH---------AD--YVKNMITGAAQMDGAILVVSGADGPMPQTKEH 192 (482)
Q Consensus 138 ~~~-------~~~~~~-------~~~i~liDtPG~---------~~--~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~ 192 (482)
... ...++. -...++.|+|-. .+ -+..+..-+..|+.+|+|+|.-.. .+..+.
T Consensus 240 Id~~i~q~~i~fldtqpl~sfsi~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d--~~lir~ 317 (491)
T KOG4181|consen 240 IDPNIGQKSILFLDTQPLQSFSIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD--EQLIRL 317 (491)
T ss_pred cccccccceEEeeccccccchHHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH--HHHHHH
Confidence 111 111110 012335566541 11 144555566789999999986532 223344
Q ss_pred HHHHHHc----------------CCCcEEEEEecCCCCCh-HHHHHHHHHHHHHHHhh
Q 011581 193 ILLAKQV----------------GVPNMVVFLNKQDQVDD-EELLQLVELEVRELLSS 233 (482)
Q Consensus 193 l~~~~~~----------------~ip~iivviNK~D~~~~-~~~~~~i~~~i~~~l~~ 233 (482)
++.+..+ -.|++|++-||.-..+- ....+.+...+..++..
T Consensus 318 L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~riDf~pr~rerl~~~~~~l~~~ 375 (491)
T KOG4181|consen 318 LNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHRIDFEPRQRERLDKKLAYLYGP 375 (491)
T ss_pred HHHHHhhCcccCccccccccccccCcceEEEeccccccccChHHHHHHHHHHHHHhcc
Confidence 4433321 25789999999877662 22233343445555543
No 399
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.04 E-value=5.7e-05 Score=72.26 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=44.5
Q ss_pred cCCCcEEEEEecCCCCC--------hHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhh
Q 011581 199 VGVPNMVVFLNKQDQVD--------DEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVD 270 (482)
Q Consensus 199 ~~ip~iivviNK~D~~~--------~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~ 270 (482)
+|+| ++||++|+|.+. .++.+..++..+++++-++| ...|.+|+++..
T Consensus 221 lGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-----aaLiyTSvKE~K------------------ 276 (473)
T KOG3905|consen 221 LGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-----AALIYTSVKETK------------------ 276 (473)
T ss_pred CCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-----ceeEEeeccccc------------------
Confidence 5777 889999999853 23556667778888887776 457899998776
Q ss_pred hHHHHHHHhhhc
Q 011581 271 KIYELMDSVDSY 282 (482)
Q Consensus 271 gi~~Ll~~l~~~ 282 (482)
+++-|..+|...
T Consensus 277 NidllyKYivhr 288 (473)
T KOG3905|consen 277 NIDLLYKYIVHR 288 (473)
T ss_pred chHHHHHHHHHH
Confidence 567777777653
No 400
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.02 E-value=0.00028 Score=76.97 Aligned_cols=181 Identities=15% Similarity=0.207 Sum_probs=118.4
Q ss_pred EeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEe-cCCCCChHHHHHHHHHHHHHHH
Q 011581 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLN-KQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 153 iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~i~~~i~~~l 231 (482)
-|+-|..+.+.+.+..+....+-+=|+.+.-|.. +...+.++...+. +|+.+| |.+. .++...
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~i--t~~Dv~lA~~~~a--~ii~Fnv~~~~------------~~~~~a 612 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLGEV--TETDVEFASTTNA--EILAFNTNLAP------------GAKKAA 612 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecCCC--CHHHHHHHHhcCC--EEEEeeCCCCH------------HHHHHH
Confidence 4777777777777776665555566665554432 2333344444442 455555 2221 222333
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEE
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVA 311 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~ 311 (482)
++.+ +.+..-+-. |+-++++-+++...++ |.......-++.|..+|.++. |.++
T Consensus 613 ~~~~-----v~i~~~~iI-------------------Y~lid~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k-~~ia 666 (742)
T CHL00189 613 RKLN-----IIIKEYQVI-------------------YDLLEYIEALMEDLLD-PEYKKVPIGEAEVKTVFPLAK-RFVA 666 (742)
T ss_pred HHcC-----CEEEEeChH-------------------HHHHHHHHHHHhhccC-ceeeeeeceeEEeeEEEecCC-CEEE
Confidence 3322 444433322 2234555555555554 333333344677899999876 9999
Q ss_pred EEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEe
Q 011581 312 TGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 312 ~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
..+|.+|.|+.|..+++...+.. +..+|.||++++.++.++..|+.||+.+.+ ..+++.||+|-
T Consensus 667 Gc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~--~~d~~~gD~ie 731 (742)
T CHL00189 667 GCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEE--FQLWQSGDKIH 731 (742)
T ss_pred EEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeC--CCCCCcCCEEE
Confidence 99999999999999999987653 356899999999999999999999999985 57899999985
No 401
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=98.01 E-value=5.7e-05 Score=59.07 Aligned_cols=78 Identities=29% Similarity=0.411 Sum_probs=56.5
Q ss_pred ceEEEEEEEeecCCC-----CCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccC
Q 011581 386 TKFLAIVYVLKKEEG-----GRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQG 460 (482)
Q Consensus 386 ~~f~a~v~~l~~~~~-----~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~ 460 (482)
++++.+.++|+..-+ .+-.||..|...++.+|+..+.++|.++.. | .+++.|.+|+|.+.|
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~------------d--~~~v~L~~Pvc~~~g 67 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVKK------------D--MAEVELKKPVCAEKG 67 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEET------------T--EEEEEEEEEEE-STT
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEEC------------C--EEEEEecCCeEcCcC
Confidence 356677777765321 223689999999999999999999999974 2 577889999999999
Q ss_pred CeEEEee--C--CcEEEEEEE
Q 011581 461 MRFAIRE--G--GKTVGAGVI 477 (482)
Q Consensus 461 ~rfilr~--~--~~tvg~G~v 477 (482)
+|++|-. + .+.+|+|.|
T Consensus 68 ~rvaiSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 68 ERVAISRRIGNRWRLIGWGII 88 (88)
T ss_dssp SEEEEEEEETTSEEEEEEEEE
T ss_pred CeeeeehhccCeEEEEEEEeC
Confidence 9999932 2 589999986
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.00 E-value=6.1e-06 Score=79.37 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=41.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
...+++|++|+|||||+|+|..... ..|..+ ....+.+.+|.......+...+ .||||||...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS---------~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEIS---------EKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhc---------ccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 3689999999999999999986421 111111 1112344556655555554333 68999998765
No 403
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.00 E-value=8.6e-05 Score=59.71 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=50.2
Q ss_pred eEEEEeEEeeCCC-ceEEEEEEEeeeeecCCEEEEecCC-------ccceeEEEEEeecc----cccceeecCCeEEEE
Q 011581 295 LLAVEDVFSITGR-GTVATGRVERGTIKVGETVDLVGLK-------ETRNFTVTGVEMFQ----KTLDEAMAGDNVGLL 361 (482)
Q Consensus 295 ~~~I~~v~~v~g~-G~v~~G~v~sG~l~~g~~v~i~p~~-------~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~ 361 (482)
.+.|..+...+.. |.+..|||.+|+|+.||.|++...+ +....+|..|...+ .++++|.|||+|++.
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 3556666666666 6789999999999999999886422 11246777777653 579999999999886
No 404
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.00 E-value=4.8e-05 Score=68.69 Aligned_cols=119 Identities=26% Similarity=0.262 Sum_probs=73.1
Q ss_pred EecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh----hhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 91 IGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE----ERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 91 ~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~----e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
-+..|+||||+.-.|.......|.... .+|..+. ....+..........+.-...+.|||||+.... ...
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vl----lvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~ 79 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVV----LIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFI 79 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEE----EEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHH
Confidence 346889999999999887766554211 1111110 000000000000000111117999999986443 344
Q ss_pred hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..+..+|.+|+++++.......+...++.+...+.+.+.+++|++|...
T Consensus 80 ~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 80 TAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 5577899999999998877777777777777777776778999998754
No 405
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.99 E-value=1.3e-05 Score=79.95 Aligned_cols=82 Identities=23% Similarity=0.206 Sum_probs=55.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCChhhhcCCceeeeeeeEeec-----------------CC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAPEERARGITINTATVEYET-----------------EN 147 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-----------------~~ 147 (482)
++++++|.+++|||||+|+|++... ..+...+. |++........ ..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft----------------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT----------------TIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC----------------CCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 6899999999999999999997644 33332222 12111111111 12
Q ss_pred eEEEEEeCCCchh-------hHHHHHhhcccCCeEEEeecCCC
Q 011581 148 RHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 148 ~~i~liDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~ 183 (482)
..+.++|.||... .....+..++.+|++++|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 3578999999432 44566777889999999999864
No 406
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.99 E-value=1.1e-05 Score=78.99 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=41.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
...+++++|.+|+|||||+|+|++... .......|+|........ +..+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI---------------AKTGNRPGVTKAQQWIKL---GKGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc---------------cccCCCCCeEEEEEEEEe---CCcEEEEECCCc
Confidence 457899999999999999999986421 112234577777654333 345899999995
No 407
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.99 E-value=2.2e-05 Score=69.68 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-+++.|..|+|||||+++|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3679999999999999999865
No 408
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.99 E-value=1.6e-06 Score=76.15 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=93.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe---EEEEEeCCCchhh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR---HYAHVDCPGHADY 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~---~i~liDtPG~~~~ 161 (482)
..++.|+|.-++||++++.+.++..-+... ...+-++.+...+.++++ ++.|||..|+++|
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~y----------------RAtIgvdfalkVl~wdd~t~vRlqLwdIagQerf 88 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHY----------------RATIGVDFALKVLQWDDKTIVRLQLWDIAGQERF 88 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHH----------------HHHHhHHHHHHHhccChHHHHHHHHhcchhhhhh
Confidence 457999999999999999999876321110 011122222222334443 3569999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHH-Hc----C--CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAK-QV----G--VPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~-~~----~--ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
...+.-+.+.+.++.+|+|.+...... +....+.+. .+ | +| +++.-||||+..+... .-..++.++.+.
T Consensus 89 g~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~-~vllankCd~e~~a~~--~~~~~~d~f~ke 165 (229)
T KOG4423|consen 89 GNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQEKSAKN--EATRQFDNFKKE 165 (229)
T ss_pred cceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcch-heeccchhccChHhhh--hhHHHHHHHHhc
Confidence 888888889999999999998755422 222222221 11 2 34 6677799998764221 112356677777
Q ss_pred cCCCCCCccEEEcchhhhH
Q 011581 234 YEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~ 252 (482)
.|+ .-++.+|++.+.
T Consensus 166 ngf----~gwtets~Kenk 180 (229)
T KOG4423|consen 166 NGF----EGWTETSAKENK 180 (229)
T ss_pred cCc----cceeeecccccc
Confidence 676 468899998876
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=4.1e-05 Score=79.46 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=65.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---hh------hcCCceeeeeee-------EeecCCe
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---EE------RARGITINTATV-------EYETENR 148 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~-------~~~~~~~ 148 (482)
...|+++|..|+||||++..|.......+.+........|... .+ ...|+.+....- .-...++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 3579999999999999999998754432211000000112111 01 112222211100 0012467
Q ss_pred EEEEEeCCCchhhHHHH------HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 149 HYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 149 ~i~liDtPG~~~~~~~~------~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+++||||||........ +.... ....+||+++..+.... .+.++.....+. .-+++||+|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl-~eii~~f~~~~~--~gvILTKlDEt~ 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDL-DEVVRRFAHAKP--QGVVLTKLDETG 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHH-HHHHHHHHhhCC--eEEEEecCcCcc
Confidence 89999999964332221 11112 24567888887643322 233444444443 357899999854
No 410
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.98 E-value=9.8e-06 Score=77.36 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=40.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhc-CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..++++|++|+|||||+|+|++..... |..+ ....+.+++|.+.....+ .+ ..|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~---------~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDIS---------SKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccccee---------ccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 478999999999999999999753221 1110 011234456666655555 22 389999997554
No 411
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.98 E-value=8.6e-06 Score=80.83 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=42.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
...++.++|.+|+|||||+|+|++... .......|+|........+ ..+.|+||||
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~---------------~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPG 186 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKV---------------AKTSNRPGTTKGIQWIKLD---DGIYLLDTPG 186 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccc---------------eeeCCCCceecceEEEEcC---CCeEEecCCC
Confidence 457899999999999999999987532 2223445888777766554 3389999999
No 412
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.97 E-value=1.1e-05 Score=78.64 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=40.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
...+++++|.+|+|||||+|+|++... .......|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV---------------AKVGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc---------------cccCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 457899999999999999999985311 111234566766554433 235899999996
No 413
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.97 E-value=1.2e-05 Score=72.47 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=39.8
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
..++++++|.+|+|||||+|+|++... .......|.|.......++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~---------------~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV---------------AKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc---------------eeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 347899999999999999999985311 1112233556665554443 55899999995
No 414
>PRK12289 GTPase RsgA; Reviewed
Probab=97.97 E-value=2.7e-05 Score=77.96 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=58.4
Q ss_pred cccCCeEEEeecCCCCC-hH-HHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEc
Q 011581 169 AAQMDGAILVVSGADGP-MP-QTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISG 246 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~-~~-~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~ 246 (482)
++.+|.+++|+|+.+.. .. +..+.+..+...++| +|+|+||+|+++.++. + .+.+.++..+ ++++++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~~~~~-~----~~~~~~~~~g-----~~v~~i 155 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLE-IVLCLNKADLVSPTEQ-Q----QWQDRLQQWG-----YQPLFI 155 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEchhcCChHHH-H----HHHHHHHhcC-----CeEEEE
Confidence 67899999999998643 23 334555566667888 7899999999875432 1 2233334444 468999
Q ss_pred chhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 247 SALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 247 Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
||.++. |+.+|++.|.
T Consensus 156 SA~tg~------------------GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETGI------------------GLEALLEQLR 171 (352)
T ss_pred EcCCCC------------------CHHHHhhhhc
Confidence 999987 7778877764
No 415
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.96 E-value=5.6e-05 Score=77.71 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=70.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---h------hhcCCceeeeeeeE----------e-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---E------ERARGITINTATVE----------Y- 143 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~------e~~~g~Ti~~~~~~----------~- 143 (482)
+...|.++|.+|+||||++..|.......|....-- ..|... . ....|+.+...... +
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV--~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV--AADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe--cCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 356789999999999999999987766554321110 111110 0 01122222111000 0
Q ss_pred ecCCeEEEEEeCCCchhhHHHH------HhhcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCCC
Q 011581 144 ETENRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 144 ~~~~~~i~liDtPG~~~~~~~~------~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~~ 215 (482)
....+.++||||||........ +..+..+|.+++|+|+..|. ...+...... ..++. -+++||+|...
T Consensus 172 ~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~~l~i~--gvIlTKlD~~a 246 (437)
T PRK00771 172 KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHEAVGIG--GIIITKLDGTA 246 (437)
T ss_pred HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHhcCCCC--EEEEecccCCC
Confidence 0123579999999965443332 22344689999999998862 2233333222 23333 46789999754
No 416
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=3.7e-05 Score=75.70 Aligned_cols=83 Identities=27% Similarity=0.310 Sum_probs=56.6
Q ss_pred cccCCeEEEeecCCCCCh--HHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEc
Q 011581 169 AAQMDGAILVVSGADGPM--PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISG 246 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~ 246 (482)
++.+|.+++|+|+.+... ....+.+..+...++| +++|+||+|+.+..+..+ +..+.++..+ .+++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~~----~~~~~~~~~g-----~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK-PIIVLNKIDLLDDLEEAR----ELLALYRAIG-----YDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCCHHHHH----HHHHHHHHCC-----CeEEEE
Confidence 578999999999976432 2223445556677888 788999999974332221 2333344433 579999
Q ss_pred chhhhHHHhhcCCCcccCcchhhhhHHHHHHHh
Q 011581 247 SALLALEALMANPSIKRGENQWVDKIYELMDSV 279 (482)
Q Consensus 247 Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l 279 (482)
||.++. |+.+|++.+
T Consensus 148 SA~~g~------------------gi~~L~~~l 162 (298)
T PRK00098 148 SAKEGE------------------GLDELKPLL 162 (298)
T ss_pred eCCCCc------------------cHHHHHhhc
Confidence 999988 777777765
No 417
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.93 E-value=1.5e-05 Score=73.92 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=60.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
.-+++++|-+.+|||||+..|++...+... ..+.|.........+++-++.+.|.||..+-
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vas----------------yefttl~~vpG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAA----------------YEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccc----------------ccceeEEEecceEeccccceeeecCcchhccccc
Confidence 348999999999999999999864322222 1223444444455677888999999996443
Q ss_pred ----HHHHHhhcccCCeEEEeecCCCCC
Q 011581 162 ----VKNMITGAAQMDGAILVVSGADGP 185 (482)
Q Consensus 162 ----~~~~~~~~~~~D~~ilVvda~~g~ 185 (482)
-++.+.-++.|+++++|.|+...+
T Consensus 123 gkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 123 GKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred CCCCccEEEEEeecccEEEEEeeccCcc
Confidence 345666677899999999987644
No 418
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.91 E-value=3.3e-05 Score=78.08 Aligned_cols=101 Identities=20% Similarity=0.114 Sum_probs=64.5
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.++|..........+|++++|+|+.+.......+..+.+ .+.| +++|+||+|+...+...+.+.+.++++++..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 457776555556788999999999875433333322222 1556 8899999999763322223333445556666652
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
...++++||++|. |+.+|++.|.+
T Consensus 127 --~~~i~~vSAk~g~------------------gv~eL~~~l~~ 150 (360)
T TIGR03597 127 --PVDIILVSAKKGN------------------GIDELLDKIKK 150 (360)
T ss_pred --cCcEEEecCCCCC------------------CHHHHHHHHHH
Confidence 1248899999998 66777777654
No 419
>PRK12289 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.3e-05 Score=80.26 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=39.3
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHh-cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALAS-LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.++++|.+|+|||||+|+|++.... .+..+ ....+.+.+|.+.....+... ..|+||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs---------~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVS---------GKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccccc---------CCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 4899999999999999999864221 11100 111234456666544444222 279999997654
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=4.2e-05 Score=76.26 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=68.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---hh------hcCCceeeeeee--E-------ee-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---EE------RARGITINTATV--E-------YE- 144 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~--~-------~~- 144 (482)
+...++++|+.|+||||++..|.......|..... ...|... .+ ...++.+....- . +.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~l--ItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF--ITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--EeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 34578999999999999999998765444431110 0112111 11 111221111000 0 00
Q ss_pred cCCeEEEEEeCCCch----hhHHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 145 TENRHYAHVDCPGHA----DYVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 145 ~~~~~i~liDtPG~~----~~~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..++.++||||||.. +...++.... ...|..+||+++..... +..+.+......++.. +++||+|...
T Consensus 283 ~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~-d~~~i~~~f~~l~i~g--lI~TKLDET~ 356 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSA-DVMTILPKLAEIPIDG--FIITKMDETT 356 (407)
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHH-HHHHHHHhcCcCCCCE--EEEEcccCCC
Confidence 135789999999973 3333333322 24577788888743222 2223333334456663 4689999865
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=97.88 E-value=6.3e-05 Score=77.21 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=67.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhc-CCCCCcccccccCCh---h------hhcCCceeeeeee-------------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDAAP---E------ERARGITINTATV------------- 141 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~---~------e~~~g~Ti~~~~~------------- 141 (482)
...|.++|..|+||||++..|....... |....-- ..|... . -...|+.+.....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV--~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLV--AADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEE--EccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 5678999999999999999998766554 4322110 011110 0 0112322211100
Q ss_pred EeecCCeEEEEEeCCCch----hhHHHHHh--hcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCC
Q 011581 142 EYETENRHYAHVDCPGHA----DYVKNMIT--GAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 142 ~~~~~~~~i~liDtPG~~----~~~~~~~~--~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~ 214 (482)
.....++.+.||||||.. ....++.. ....+|.+++|+|+..| ....+...... ..++. -+++||+|..
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~--giIlTKlD~~ 253 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLT--GVILTKLDGD 253 (433)
T ss_pred HHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCC--EEEEeCccCc
Confidence 011235779999999943 22222211 22367888999998754 22222222222 34454 4578999964
Q ss_pred C
Q 011581 215 D 215 (482)
Q Consensus 215 ~ 215 (482)
.
T Consensus 254 ~ 254 (433)
T PRK10867 254 A 254 (433)
T ss_pred c
Confidence 3
No 422
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.88 E-value=3e-05 Score=68.65 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=39.3
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
+.......+++++|.+++|||||+|+|.+... .......|.|....... .+..+.+|||||.
T Consensus 95 ~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~---------------~~~~~~~~~t~~~~~~~---~~~~~~~~DtpGi 156 (156)
T cd01859 95 AKIDGKEGKVGVVGYPNVGKSSIINALKGRHS---------------ASTSPSPGYTKGEQLVK---ITSKIYLLDTPGV 156 (156)
T ss_pred HhhcCCCcEEEEECCCCCCHHHHHHHHhCCCc---------------cccCCCCCeeeeeEEEE---cCCCEEEEECcCC
Confidence 33344567899999999999999999974311 11112334454333222 2336899999993
No 423
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.88 E-value=3.9e-05 Score=69.58 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=39.7
Q ss_pred CeEEEEEeCCCchhhHHH-----HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHH
Q 011581 147 NRHYAHVDCPGHADYVKN-----MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQ 221 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~-----~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~ 221 (482)
...+.||.+.|-.+.... ........+.+|.|||+..-........+ +...+..-. ++++||+|+++.++..+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~-~~~Qi~~AD-vIvlnK~D~~~~~~~i~ 161 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL-LREQIAFAD-VIVLNKIDLVSDEQKIE 161 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH-HHHHHCT-S-EEEEE-GGGHHHH--HH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh-hhhcchhcC-EEEEeccccCChhhHHH
Confidence 457899999995443222 12223457899999999653222222211 122222222 46899999998653334
Q ss_pred HHH
Q 011581 222 LVE 224 (482)
Q Consensus 222 ~i~ 224 (482)
.+.
T Consensus 162 ~~~ 164 (178)
T PF02492_consen 162 RVR 164 (178)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 424
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.87 E-value=0.00018 Score=59.30 Aligned_cols=100 Identities=25% Similarity=0.259 Sum_probs=67.8
Q ss_pred EEEE-ecCCccHHHHHHHHHHhHHhc-CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 88 IGTI-GHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 88 I~i~-G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
|+++ +..|+||||+.-.|....... |.... .+|..+. .+..+.++|||+.... ..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~----l~d~d~~-----------------~~~D~IIiDtpp~~~~--~~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVL----LVDLDLQ-----------------FGDDYVVVDLGRSLDE--VS 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEE----EEECCCC-----------------CCCCEEEEeCCCCcCH--HH
Confidence 3444 447899999999998766554 43111 1111111 1117999999986543 34
Q ss_pred HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCC---cEEEEEec
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP---NMVVFLNK 210 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip---~iivviNK 210 (482)
...+..+|.++++++.+........+.++.+...+.+ ++.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4566789999999999887777778888888777654 67788886
No 425
>PRK13796 GTPase YqeH; Provisional
Probab=97.86 E-value=2.3e-05 Score=79.30 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=42.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
..++.++|.+|+|||||+|+|++... +. .+........|+|.+.....+.. ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~--~~--------~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEIT--GE--------KDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcc--Cc--------cceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 45899999999999999999986421 11 01112345678888766555432 25899999963
No 426
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.84 E-value=0.00056 Score=67.58 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=59.4
Q ss_pred CCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh--------HHHHHHHHHHHH-----
Q 011581 132 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM--------PQTKEHILLAKQ----- 198 (482)
Q Consensus 132 ~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~--------~~t~e~l~~~~~----- 198 (482)
|-.|.-.....|+..+..+.++|.+|++.-.+.++.-...++++|+|++.++-.+ ..-.|.+.+...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 3334445566777888899999999999999999999999999999999875211 111223333222
Q ss_pred --cCCCcEEEEEecCCCCC
Q 011581 199 --VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 199 --~~ip~iivviNK~D~~~ 215 (482)
...+ +|+++||.|+-.
T Consensus 259 ~F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 259 WFANTS-IILFLNKKDLFE 276 (354)
T ss_pred ccccCc-EEEEeecHHHHH
Confidence 1455 999999999853
No 427
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.79 E-value=0.00037 Score=60.41 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=67.0
Q ss_pred EEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhhc
Q 011581 90 TIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 169 (482)
Q Consensus 90 i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~ 169 (482)
.-|..|+||||+.-.|...+...|.... .+|... .+..+ .+.+.++|+|+..+ ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~----~vd~D~----~~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVL----LLDADL----GLANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEE----EEECCC----CCCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 3467889999999888776654443111 112110 01111 16799999998543 3334567
Q ss_pred ccCCeEEEeecCCCCChHHHHHHHHHHHHc-CCCcEEEEEecCCCC
Q 011581 170 AQMDGAILVVSGADGPMPQTKEHILLAKQV-GVPNMVVFLNKQDQV 214 (482)
Q Consensus 170 ~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-~ip~iivviNK~D~~ 214 (482)
..+|.+++|++.+......+...++.+... +.+++.+++|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 889999999999866555566666555433 444577899999754
No 428
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.79 E-value=3.2e-05 Score=78.12 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
.++.++|.+|+|||||+|+|++...... +........|.|.+.....+ +..+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~----------~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK----------DVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc----------ceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCC
Confidence 6899999999999999999997522100 11122345677877654433 2346899999964
No 429
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.77 E-value=3.4e-05 Score=75.50 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=41.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhc-CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..++++|++|+|||||+|.|++..... |... ....+.+++|.......+... ..++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~---------~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEIS---------EKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccccee---------ccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 579999999999999999998753321 1100 111233445665544444322 379999998765
No 430
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.77 E-value=0.00011 Score=71.95 Aligned_cols=83 Identities=27% Similarity=0.269 Sum_probs=56.7
Q ss_pred cccCCeEEEeecCCCCC-hH-HHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEc
Q 011581 169 AAQMDGAILVVSGADGP-MP-QTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISG 246 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~-~~-~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~ 246 (482)
+..+|.+++|+|+.+.. .. ...+.+..+...++| +++|+||+|+.+..+... ........ ..+++++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~~-----~~~~~~~~-----g~~v~~v 144 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE-PVIVLTKADLLDDEEEEL-----ELVEALAL-----GYPVLAV 144 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEEHHHCCChHHHHH-----HHHHHHhC-----CCeEEEE
Confidence 56899999999998875 32 333455556677888 788999999976422111 11122222 2689999
Q ss_pred chhhhHHHhhcCCCcccCcchhhhhHHHHHHHhh
Q 011581 247 SALLALEALMANPSIKRGENQWVDKIYELMDSVD 280 (482)
Q Consensus 247 Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~ 280 (482)
||+++. |+++|.+.|.
T Consensus 145 SA~~g~------------------gi~~L~~~L~ 160 (287)
T cd01854 145 SAKTGE------------------GLDELREYLK 160 (287)
T ss_pred ECCCCc------------------cHHHHHhhhc
Confidence 999998 7777777653
No 431
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.73 E-value=0.00015 Score=74.40 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=67.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCChh---------hhcCCceeeeeee-------------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAPE---------ERARGITINTATV------------- 141 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~------------- 141 (482)
...+.++|++|+||||++..|..... ..|....-- ..|.... ....|+.+.....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV--~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV--ACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE--eccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 45789999999999999999987643 234311100 1111100 0112222111100
Q ss_pred EeecCCeEEEEEeCCCchhh----HHHHH--hhcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCC
Q 011581 142 EYETENRHYAHVDCPGHADY----VKNMI--TGAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 142 ~~~~~~~~i~liDtPG~~~~----~~~~~--~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~ 214 (482)
.....++.+.||||||.... ..++. .....+|.++||+|+..+ ....+...... ..++. =+++||+|..
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~--giIlTKlD~~ 252 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLT--GVVLTKLDGD 252 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCC--EEEEeCccCc
Confidence 01124567999999995322 22221 122358899999999754 23333333332 34655 3568999964
Q ss_pred C
Q 011581 215 D 215 (482)
Q Consensus 215 ~ 215 (482)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 432
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.73 E-value=5.7e-05 Score=77.34 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=55.1
Q ss_pred eeeeeeeEeec-CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC--------Ch---HHHHHHHHHHHH----
Q 011581 135 TINTATVEYET-ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG--------PM---PQTKEHILLAKQ---- 198 (482)
Q Consensus 135 Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g--------~~---~~t~e~l~~~~~---- 198 (482)
|.......|.. .+..+.++|+.|+..-.+.++..+...+++|+||+.++- -. ......+..+..
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 33344556677 888999999999998889999999999999999997641 11 233333333222
Q ss_pred cCCCcEEEEEecCCCC
Q 011581 199 VGVPNMVVFLNKQDQV 214 (482)
Q Consensus 199 ~~ip~iivviNK~D~~ 214 (482)
.+.+ +|+++||+|+.
T Consensus 302 ~~~~-iil~lnK~D~f 316 (389)
T PF00503_consen 302 KNTP-IILFLNKIDLF 316 (389)
T ss_dssp TTSE-EEEEEE-HHHH
T ss_pred ccCc-eEEeeecHHHH
Confidence 1455 99999999963
No 433
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00017 Score=73.61 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=68.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHh-cCCCCCcccccccCCh---------hhhcCCceeeeeee-------EeecCC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALAS-LGNSAPKKYDEIDAAP---------EERARGITINTATV-------EYETEN 147 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~~-------~~~~~~ 147 (482)
...|+++|..|+||||++..|.+.... .+..... ....|... ..+..|+......- .....+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~-~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVA-LLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 357999999999999999999875321 1111000 00011100 01122333221111 112356
Q ss_pred eEEEEEeCCCchhhHHH---HHhhc---ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 148 RHYAHVDCPGHADYVKN---MITGA---AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~~---~~~~~---~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..+.+|||+|....... .+..+ ...+-.+||+|++.+.... .+.+......++.. +++||+|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f~~~~~~~--~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISAYQGHGIHG--CIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHHhcCCCCCE--EEEEeeeCCC
Confidence 78999999995432221 11222 2345688999998544322 23333444567764 4579999875
No 434
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00024 Score=72.99 Aligned_cols=106 Identities=23% Similarity=0.351 Sum_probs=81.9
Q ss_pred hhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeeccc
Q 011581 269 VDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQK 347 (482)
Q Consensus 269 ~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~ 347 (482)
|+.++++-.++...+. |.....--=..-+-.+|.+++.|.++...|..|.++.|..+.+...+.. +..+|.+++.+++
T Consensus 390 Y~lied~~~~~~g~l~-p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kd 468 (509)
T COG0532 390 YKLIEDVEAAMKGMLE-PEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKD 468 (509)
T ss_pred HHHHHHHHHHHHhccc-hhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCc
Confidence 5556666666655543 3222222224566789999999999999999999999999999854421 2468999999999
Q ss_pred ccceeecCCeEEEEEccccccCcccCeEEe
Q 011581 348 TLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 348 ~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
++.++.+|+.|++.+++ ..+++.||+|-
T Consensus 469 dv~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 469 DVKEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred cHhHhccCcEEEEEecC--cccCCCCCEEE
Confidence 99999999999999996 68899999884
No 435
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.69 E-value=0.00041 Score=71.94 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=41.8
Q ss_pred cCCCcEEEEEecCCCCC--------hHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhh
Q 011581 199 VGVPNMVVFLNKQDQVD--------DEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVD 270 (482)
Q Consensus 199 ~~ip~iivviNK~D~~~--------~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~ 270 (482)
+|+| ++||++|.|... .++.++.+.+.++.++-++| ..+|.+|.+...
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-----AsL~yts~~~~~------------------ 250 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-----ASLIYTSVKEEK------------------ 250 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-----CeEEEeeccccc------------------
Confidence 3678 999999999753 13455666667777777766 457778877664
Q ss_pred hHHHHHHHhhhcC
Q 011581 271 KIYELMDSVDSYI 283 (482)
Q Consensus 271 gi~~Ll~~l~~~l 283 (482)
+++.|..+|...+
T Consensus 251 n~~~L~~yi~h~l 263 (472)
T PF05783_consen 251 NLDLLYKYILHRL 263 (472)
T ss_pred cHHHHHHHHHHHh
Confidence 5566677766544
No 436
>PRK13796 GTPase YqeH; Provisional
Probab=97.65 E-value=0.0002 Score=72.49 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=60.0
Q ss_pred hhHHHHHhhcccCC-eEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 160 DYVKNMITGAAQMD-GAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 160 ~~~~~~~~~~~~~D-~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
+|. .++..+...| .+++|||+.+.......+..+.. .+.| +++|+||+|+...+...+.+.+.++.+.+..++.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 444 4667777666 89999999884433322222211 1556 8899999999753221222332334455555542
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
...++.+||++|. |+.+|++.|.+.
T Consensus 133 -~~~v~~vSAk~g~------------------gI~eL~~~I~~~ 157 (365)
T PRK13796 133 -PVDVVLISAQKGH------------------GIDELLEAIEKY 157 (365)
T ss_pred -cCcEEEEECCCCC------------------CHHHHHHHHHHh
Confidence 2358899999987 666666666543
No 437
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00029 Score=67.94 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=70.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh--------h-hhcCCceeeeeee---------Ee-e
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP--------E-ERARGITINTATV---------EY-E 144 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~--------~-e~~~g~Ti~~~~~---------~~-~ 144 (482)
+..+++++|..|+|||||+..|.......+..... ...|... . -...++.+....- .+ .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~--i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGF--ITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE--EecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 34689999999999999999998765433221110 0111111 0 0112222211100 00 1
Q ss_pred cCCeEEEEEeCCCchh----hHHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 145 TENRHYAHVDCPGHAD----YVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~----~~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..+..+.||||||... .+.++...+ ...|-.+||+|++.+.. +..+.++.....++.. ++++|+|...
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~~~--~I~TKlDet~ 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHIDG--IVFTKFDETA 225 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCCCE--EEEEeecCCC
Confidence 1356899999999542 334333332 35678899999875332 2223344444567774 4679999875
No 438
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00014 Score=73.60 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=68.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH-HhcCCCCCcccccccCCh---hh------hcCCceeeee------eeEeecCCeE
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL-ASLGNSAPKKYDEIDAAP---EE------RARGITINTA------TVEYETENRH 149 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~------~~~~~~~~~~ 149 (482)
..++++|++|+||||++..|.... ...|....- ...|... .+ ...|+..... ...+...+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~L--it~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSL--YTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE--ecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 458999999999999999998643 233321100 0111110 00 1122222110 0001124678
Q ss_pred EEEEeCCCchh----hHHHHHhhcc-----cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 150 YAHVDCPGHAD----YVKNMITGAA-----QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 150 i~liDtPG~~~----~~~~~~~~~~-----~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+.||||||... ....+...+. ...-.+||+|++.+.... .+.+......++.. ++++|+|-..
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~~~g--lIlTKLDEt~ 373 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLNYRR--ILLTKLDEAD 373 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCCCCE--EEEEcccCCC
Confidence 99999999642 2222222221 234688999998765332 34444446667774 4689999865
No 439
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00056 Score=69.32 Aligned_cols=128 Identities=20% Similarity=0.128 Sum_probs=71.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCC--CCCcccccccCCh---hh------hcCCceeeeeeeE-------eecC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGN--SAPKKYDEIDAAP---EE------RARGITINTATVE-------YETE 146 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~--~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~~-------~~~~ 146 (482)
...|+++|+.|+||||.+..|.......+. +..-.....|.+. .+ ...|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 357899999999999999999865442211 1100001112211 00 1123322111100 0125
Q ss_pred CeEEEEEeCCCchh----hHHHHHhhcc--cCC-eEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHAD----YVKNMITGAA--QMD-GAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~----~~~~~~~~~~--~~D-~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
++.+.||||||... .+..+...+. ..+ -.+||+||+.+..... +.+......++.. ++++|.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~--~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKT--VIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCE--EEEEeccCCC
Confidence 67899999999532 2233333333 223 5889999998744333 5555555567774 4579999865
No 440
>PRK12288 GTPase RsgA; Reviewed
Probab=97.60 E-value=0.00039 Score=69.69 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=58.0
Q ss_pred cccCCeEEEeecCCCCChHHH-HHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcc
Q 011581 169 AAQMDGAILVVSGADGPMPQT-KEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGS 247 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~S 247 (482)
+.++|.+++|.+......... .+.+..+...++| .++|+||+|+.+..+. +.+. +..+.++.++ .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~~~-~~~~-~~~~~y~~~g-----~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIE-PLIVLNKIDLLDDEGR-AFVN-EQLDIYRNIG-----YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCcHHH-HHHH-HHHHHHHhCC-----CeEEEEe
Confidence 467999999998775544333 3334456667888 6789999999874322 1121 2223333333 5899999
Q ss_pred hhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 248 ALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 248 a~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
|+++. |+.+|++.|..
T Consensus 190 A~tg~------------------GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGE------------------GLEELEAALTG 205 (347)
T ss_pred CCCCc------------------CHHHHHHHHhh
Confidence 99988 88888888753
No 441
>PRK01889 GTPase RsgA; Reviewed
Probab=97.58 E-value=0.00032 Score=70.76 Aligned_cols=82 Identities=28% Similarity=0.298 Sum_probs=57.9
Q ss_pred cccCCeEEEeecCCCCChH-HHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcc
Q 011581 169 AAQMDGAILVVSGADGPMP-QTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGS 247 (482)
Q Consensus 169 ~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~S 247 (482)
+.+.|.+++|+++...+.. .....+..+...+++ .++|+||+|+.++.+ +.. +.+..+ . ...+++++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~~~--~~~-~~~~~~----~---~g~~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAE-PVIVLTKADLCEDAE--EKI-AEVEAL----A---PGVPVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCC-EEEEEEChhcCCCHH--HHH-HHHHHh----C---CCCcEEEEE
Confidence 4678999999999876665 445666777888998 577999999986422 111 133322 1 246899999
Q ss_pred hhhhHHHhhcCCCcccCcchhhhhHHHHHHHh
Q 011581 248 ALLALEALMANPSIKRGENQWVDKIYELMDSV 279 (482)
Q Consensus 248 a~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l 279 (482)
+.+|. |+.+|.+.|
T Consensus 179 a~~g~------------------gl~~L~~~L 192 (356)
T PRK01889 179 ALDGE------------------GLDVLAAWL 192 (356)
T ss_pred CCCCc------------------cHHHHHHHh
Confidence 99987 777777765
No 442
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00028 Score=64.93 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=91.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|.++|+--+|||++.....+..... +..-.|....+|.+. +...-..+.+||.||+.+|..-.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-----------eTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-----------ETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-----------ceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCc
Confidence 459999999999999988876542211 111111111122111 11112346799999998875433
Q ss_pred ---HhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHcCCCc---EEEEEecCCCCChHHHHH---HHHHHHHHHHhhcC
Q 011581 166 ---ITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQVGVPN---MVVFLNKQDQVDDEELLQ---LVELEVRELLSSYE 235 (482)
Q Consensus 166 ---~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~~ip~---iivviNK~D~~~~~~~~~---~i~~~i~~~l~~~~ 235 (482)
..-.+.+.+.|+|||+.+... +.++-|+...+++.+.+ +=|++-|+|-..++...+ .+.+...+-+...|
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g 172 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG 172 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence 223467888999999987544 56677777777765421 668899999877543222 23334445566666
Q ss_pred CCCCCccEEEcchhhh
Q 011581 236 FPGDDVPIISGSALLA 251 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g 251 (482)
..+-.+.|..+|-...
T Consensus 173 le~v~vsf~LTSIyDH 188 (347)
T KOG3887|consen 173 LEKVQVSFYLTSIYDH 188 (347)
T ss_pred hccceEEEEEeeecch
Confidence 6555666777776543
No 443
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.54 E-value=0.00076 Score=67.54 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=72.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCCh---hh------hcCCceeeeeeeE-------eecC
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAP---EE------RARGITINTATVE-------YETE 146 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~~-------~~~~ 146 (482)
+...|+++|++|+||||-+-.|..... ..+...- .--.+|.+. .| +.-|+.+....-. ....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kV-aiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKV-AIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcce-EEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 467899999999999999999976544 1111100 001122221 11 1233333322111 1234
Q ss_pred CeEEEEEeCCCchhh----HHHHHhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADY----VKNMITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~----~~~~~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+++++||||.|+..+ ..++...+. ...-..||++++.. ...-++.+......++..+ ++||+|...
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~~~--I~TKlDET~ 352 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPIDGL--IFTKLDETT 352 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCccee--EEEcccccC
Confidence 678999999996544 333333332 23446678887642 2233555566666788754 479999876
No 444
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.0006 Score=64.06 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=81.6
Q ss_pred HhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEE
Q 011581 74 AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYA 151 (482)
Q Consensus 74 ~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~ 151 (482)
....+.....-.+||..+|.+|-|||||++.|.+...+.....- ...++........+...+ .+++
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H------------~~~~V~L~~~TyelqEsnvrlKLt 98 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTH------------TLPNVKLQANTYELQESNVRLKLT 98 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCcc------------CCCCceeecchhhhhhcCeeEEEE
Confidence 33344445566799999999999999999999864221111000 011111111111111122 4578
Q ss_pred EEeCCCchh-------------h--------HHH------HHhhc--ccCCeEEEeecCCC-CChHHHHHHHHHHHHcCC
Q 011581 152 HVDCPGHAD-------------Y--------VKN------MITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQVGV 201 (482)
Q Consensus 152 liDtPG~~~-------------~--------~~~------~~~~~--~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~i 201 (482)
++||.|+.| | +.+ ++..+ ...+++++.|..+. ++...+.-.+..+.. .+
T Consensus 99 iv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kV 177 (406)
T KOG3859|consen 99 IVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KV 177 (406)
T ss_pred EEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hh
Confidence 999999422 2 111 11222 24578999988764 555555555544443 44
Q ss_pred CcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 202 PNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 202 p~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
. +|-++-|.|.....+... .+..+..-|...|
T Consensus 178 N-IIPvIAKaDtisK~eL~~-FK~kimsEL~sng 209 (406)
T KOG3859|consen 178 N-IIPVIAKADTISKEELKR-FKIKIMSELVSNG 209 (406)
T ss_pred h-hHHHHHHhhhhhHHHHHH-HHHHHHHHHHhcC
Confidence 4 677889999988655433 3334444444433
No 445
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.54 E-value=7.1e-05 Score=75.95 Aligned_cols=59 Identities=27% Similarity=0.349 Sum_probs=44.4
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
+.+...+|+++|.+|+|||++||+|.+... .......|.|-...++.++ ..+.|.||||
T Consensus 310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~Kk---------------VsVS~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 310 RYKDVVTVGFVGYPNVGKSSTINALVGRKK---------------VSVSSTPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred CCCceeEEEeecCCCCchhHHHHHHhcCce---------------eeeecCCCCcceeEEEEcC---CCceecCCCC
Confidence 344578999999999999999999986521 2233566777777666653 4588999999
No 446
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.53 E-value=0.0012 Score=65.39 Aligned_cols=90 Identities=26% Similarity=0.218 Sum_probs=53.6
Q ss_pred CeEEEEEeCCCchhhHHHHHh--------hcccCCeEEEeecCCCCChHHH---HHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMIT--------GAAQMDGAILVVSGADGPMPQT---KEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~--------~~~~~D~~ilVvda~~g~~~~t---~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.....+|.|-|..+-.+-... .....|.+|-|||+........ .....++... . ++++||.|+++
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A--D--~ivlNK~Dlv~ 159 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA--D--VIVLNKTDLVD 159 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC--c--EEEEecccCCC
Confidence 456889999996554332222 2235688999999987554332 1222222222 2 46899999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCccEEEcch
Q 011581 216 DEELLQLVELEVRELLSSYEFPGDDVPIISGSA 248 (482)
Q Consensus 216 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa 248 (482)
+++ .+ .++..+++++- ..+++..|.
T Consensus 160 ~~~-l~----~l~~~l~~lnp---~A~i~~~~~ 184 (323)
T COG0523 160 AEE-LE----ALEARLRKLNP---RARIIETSY 184 (323)
T ss_pred HHH-HH----HHHHHHHHhCC---CCeEEEccc
Confidence 764 33 34444554442 467777765
No 447
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.52 E-value=0.004 Score=62.47 Aligned_cols=160 Identities=22% Similarity=0.322 Sum_probs=88.2
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCC-CCcccccccCChhhhcCCceeeeee----------eEee-cC
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNS-APKKYDEIDAAPEERARGITINTAT----------VEYE-TE 146 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~-~~~~~~~~d~~~~e~~~g~Ti~~~~----------~~~~-~~ 146 (482)
..|....+-|+++|++-.||||++.++.....-..-. .....+..|.+|.. ..|.|+.+.. ..++ .-
T Consensus 11 a~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~ 89 (492)
T PF09547_consen 11 AERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGI 89 (492)
T ss_pred HHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCc
Confidence 3566778899999999999999999996543211110 00111122333332 2344543321 1111 12
Q ss_pred CeEEEEEeCCCc-------------------------hhhHHHHHhhccc-----C-CeEEEeecCCCCC------hHHH
Q 011581 147 NRHYAHVDCPGH-------------------------ADYVKNMITGAAQ-----M-DGAILVVSGADGP------MPQT 189 (482)
Q Consensus 147 ~~~i~liDtPG~-------------------------~~~~~~~~~~~~~-----~-D~~ilVvda~~g~------~~~t 189 (482)
..++.+||+-|+ .-|.....-|-+. + =++|+--|.+-+. ....
T Consensus 90 ~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAE 169 (492)
T PF09547_consen 90 KVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAE 169 (492)
T ss_pred eEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHH
Confidence 456789999883 1122222333321 1 2444445555322 2455
Q ss_pred HHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhh
Q 011581 190 KEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALL 250 (482)
Q Consensus 190 ~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~ 250 (482)
.+.+..|+..|.| ||+++|-.+-...+ .. .+.+++ -++| ++|++|+++..
T Consensus 170 ervI~ELk~igKP-FvillNs~~P~s~e-t~-~L~~eL---~ekY-----~vpVlpvnc~~ 219 (492)
T PF09547_consen 170 ERVIEELKEIGKP-FVILLNSTKPYSEE-TQ-ELAEEL---EEKY-----DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHhCCC-EEEEEeCCCCCCHH-HH-HHHHHH---HHHh-----CCcEEEeehHH
Confidence 6777889999999 89999988765532 22 122232 2333 48899998753
No 448
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.52 E-value=0.0004 Score=62.28 Aligned_cols=118 Identities=25% Similarity=0.304 Sum_probs=74.3
Q ss_pred EecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhh----h-cCCceee--ee--eeEeecCCeEEEEEeCCCchhh
Q 011581 91 IGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE----R-ARGITIN--TA--TVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 91 ~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e----~-~~g~Ti~--~~--~~~~~~~~~~i~liDtPG~~~~ 161 (482)
-+..|+||||+.-.|.......|.... .+|..... . .++.... .. .......++.+.|+|||+...
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vl----lvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~- 80 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVG----LLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG- 80 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEE----EEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCc-
Confidence 355789999999999877666554211 11111000 0 0000000 00 000112467899999998632
Q ss_pred HHHHHhh--cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 162 VKNMITG--AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 162 ~~~~~~~--~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
...... +..+|.+++|+.........+.+.++.+...+.+.+-+++|+.+..
T Consensus 81 -~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 81 -DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred -HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 222222 3578999999998887778888999999999998777899999853
No 449
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.50 E-value=0.00033 Score=67.12 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=48.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
.....++-|+|-+|+|||+|+|++-.......+ ......+.|+|+.+....--.+...+.++||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k----------~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKK----------AARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhcc----------ceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 456889999999999999999999755433331 112234788999887654444666799999999
No 450
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.49 E-value=0.0005 Score=69.04 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCccccccc-CChhh------hcCCceeeee-------------eeE
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEID-AAPEE------RARGITINTA-------------TVE 142 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d-~~~~e------~~~g~Ti~~~-------------~~~ 142 (482)
++...|.++|--|+||||.++.|.......+....--+..+- ....+ ..-|+.+... .-.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 456679999999999999999998877665543221110000 00001 0111111100 011
Q ss_pred eecCCeEEEEEeCCCchhh----HHHH--HhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 143 YETENRHYAHVDCPGHADY----VKNM--ITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~----~~~~--~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+....+.+.|+||+|.... ..++ +.....+|-++||+||..|-.... -+. .-..+++- =|+++|+|-..
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a--F~e~l~it--GvIlTKlDGda 253 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA--FNEALGIT--GVILTKLDGDA 253 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH--HhhhcCCc--eEEEEcccCCC
Confidence 2234578999999994333 3332 223347899999999987644221 111 11233554 35789999654
No 451
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.48 E-value=0.0018 Score=66.13 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=78.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhH-HhcCCC---------------CCcccc------cccCChhh-------------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMAL-ASLGNS---------------APKKYD------EIDAAPEE------------- 129 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~-~~~g~~---------------~~~~~~------~~d~~~~e------------- 129 (482)
.++|+++|.-.+|||+.++.+.... -..|.+ +..-+. ..|-.+++
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 5789999999999999999887541 111111 100011 12222211
Q ss_pred ---hcCCceeeeeeeEeecCC---eEEEEEeCCCc-------------hhhHHHHHhhcccCCeEEEeec-CCC-CChHH
Q 011581 130 ---RARGITINTATVEYETEN---RHYAHVDCPGH-------------ADYVKNMITGAAQMDGAILVVS-GAD-GPMPQ 188 (482)
Q Consensus 130 ---~~~g~Ti~~~~~~~~~~~---~~i~liDtPG~-------------~~~~~~~~~~~~~~D~~ilVvd-a~~-g~~~~ 188 (482)
...|.|+....+.+..++ .+..++|.||. .+.......++..++++||+|. .+- .....
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSn 467 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSI 467 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhh
Confidence 235777776666665544 46789999994 2334555667788999999874 221 11122
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 189 TKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 189 t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.......+.-.|.. -|+|++|+|+..
T Consensus 468 VTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 468 VTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred HHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 23333444555766 688999999864
No 452
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00053 Score=67.43 Aligned_cols=124 Identities=22% Similarity=0.230 Sum_probs=72.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCccc------ccccCChh-hhcCCceeeeeee-------------Eeec
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKY------DEIDAAPE-ERARGITINTATV-------------EYET 145 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~------~~~d~~~~-e~~~g~Ti~~~~~-------------~~~~ 145 (482)
--|.++|--|+||||.+..|.......|....--+ ...|.... ....++.+..++. .|..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 34789999999999999999988777776432211 11222222 1122333322221 1334
Q ss_pred CCeEEEEEeCCCch----hhHHHHHhh--cccCCeEEEeecCCCCCh--HHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHA----DYVKNMITG--AAQMDGAILVVSGADGPM--PQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~----~~~~~~~~~--~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
++..++|+||.|.. ....++..- +-.+|-+|+|+||+-|-. .|.+.+= ...++- -++++|+|--
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk---~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK---ETVDVG--AVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH---Hhhccc--eEEEEecccC
Confidence 67889999999932 233444332 236899999999987643 2222211 112333 3568999953
No 453
>PRK00098 GTPase RsgA; Reviewed
Probab=97.45 E-value=0.00015 Score=71.38 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..++++|++|+|||||+|+|++.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.43 E-value=0.0014 Score=53.55 Aligned_cols=82 Identities=23% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEe-cCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 88 IGTIG-HVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 88 I~i~G-~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
|++.| ..|+||||+.-.|.......|.. ...+|..+ .+.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~----vl~~d~d~-------------------~~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR----VLLIDLDP-------------------QYDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc----EEEEeCCC-------------------CCCEEEEeCcCCCCHH--HH
Confidence 56777 57899999999998765543321 11111111 1669999999965432 33
Q ss_pred hhcccCCeEEEeecCCCCChHHHHHHHH
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTKEHIL 194 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~e~l~ 194 (482)
..+..+|.++++++.+........+.++
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 6667799999999987654444444443
No 455
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.43 E-value=0.0011 Score=52.73 Aligned_cols=75 Identities=25% Similarity=0.292 Sum_probs=51.3
Q ss_pred EEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH-HH
Q 011581 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN-MI 166 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~-~~ 166 (482)
+++.|..|+||||+...|.....+.|. .+ ..++ .+.++|+||..+.... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~--------------------~v----~~~~----d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK--------------------RV----LLID----DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--------------------eE----EEEC----CEEEEeCCCCccchhhhhh
Confidence 678899999999999999877654332 11 1111 7999999996543321 24
Q ss_pred hhcccCCeEEEeecCCCCChHHHH
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTK 190 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~ 190 (482)
.....+|.++++++..........
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~~~ 77 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGAR 77 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHHHH
Confidence 555678999999998865544333
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00059 Score=74.23 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=65.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCCh---hh------hcCCceeeeeee-------EeecCCe
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAP---EE------RARGITINTATV-------EYETENR 148 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~-------~~~~~~~ 148 (482)
..|+++|+.|+||||++..|..... ..|..... ....|... .| ...|+.+....- .-...++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~-lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLA-LLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEE-EecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999987652 33321100 00011111 01 112322211100 0012466
Q ss_pred EEEEEeCCCch----hhHHHHH--hhcccCCeEEEeecCCCCChHHHHHHHHHHHH---cCCCcEEEEEecCCCCC
Q 011581 149 HYAHVDCPGHA----DYVKNMI--TGAAQMDGAILVVSGADGPMPQTKEHILLAKQ---VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 149 ~i~liDtPG~~----~~~~~~~--~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~---~~ip~iivviNK~D~~~ 215 (482)
+++||||||.. ....... ......+-.+||+|++.+... ..+.+..... .++.. +++||+|-..
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~-l~~i~~~f~~~~~~~i~g--lIlTKLDEt~ 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT-LNEVVHAYRHGAGEDVDG--CIITKLDEAT 337 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH-HHHHHHHHhhcccCCCCE--EEEeccCCCC
Confidence 89999999932 2222211 112346778999999863221 1222222222 24553 4589999765
No 457
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.0014 Score=67.69 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=66.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH-hc-CCCCCcccccccCCh---hh------hcCCceeeeeeeE-------eecCC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA-SL-GNSAPKKYDEIDAAP---EE------RARGITINTATVE-------YETEN 147 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~-g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~~~~-------~~~~~ 147 (482)
..++++|+.|+||||++..|..... .. |..... ...|... .+ +..|+.+...... -...+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~l--i~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVAL--ITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEE--EECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 4799999999999999999987654 22 221110 0112211 00 1122222111000 01235
Q ss_pred eEEEEEeCCCchhh-------HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 148 RHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 148 ~~i~liDtPG~~~~-------~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+.++||||||+..+ +..++......+-+.+|++++.+.. ...+.+......++.. +++||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~~~~--vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLPLDG--LIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCCCCE--EEEecccccc
Confidence 78999999996333 2222221223456788899875432 2233334444555543 5689999864
No 458
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.38 E-value=0.0013 Score=65.07 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=47.3
Q ss_pred eEEEEEeCCCchhhHHHHHh--------hcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHH
Q 011581 148 RHYAHVDCPGHADYVKNMIT--------GAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL 219 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~~~~~--------~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~ 219 (482)
...++|.|-|..+-..-+.. .....|.+|.|||+...........+ .......-. +|++||+|+++..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~-~~~Qi~~AD-~IvlnK~Dl~~~~-- 166 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTI-AQSQVGYAD-RILLTKTDVAGEA-- 166 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHH-HHHHHHhCC-EEEEeccccCCHH--
Confidence 46789999997654332211 11246899999999864332111111 111121122 4679999999743
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccEEEcc
Q 011581 220 LQLVELEVRELLSSYEFPGDDVPIISGS 247 (482)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~~~~~i~~S 247 (482)
+ ++.+.++.++ ...+++..+
T Consensus 167 -~----~~~~~l~~ln---p~a~i~~~~ 186 (318)
T PRK11537 167 -E----KLRERLARIN---ARAPVYTVV 186 (318)
T ss_pred -H----HHHHHHHHhC---CCCEEEEec
Confidence 2 3444444443 235666543
No 459
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.33 E-value=0.0012 Score=68.69 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=66.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCC--------hh-hhcCCceeeeeee-------EeecCCe
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAA--------PE-ERARGITINTATV-------EYETENR 148 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~--------~~-e~~~g~Ti~~~~~-------~~~~~~~ 148 (482)
..++++|..|+||||++..|..... ..|..... ....|.. .. -...|+....... ..+..++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~-LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA-LLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE-EEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 4589999999999999999987653 23321110 0011211 00 1223333221111 1223466
Q ss_pred EEEEEeCCCchhhHH---HHHhhcc---cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 149 HYAHVDCPGHADYVK---NMITGAA---QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 149 ~i~liDtPG~~~~~~---~~~~~~~---~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+.+|||+|...... .....+. ..+-.+||+|+..+... ..+.+......++.. +++||+|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~~~~~g--~IlTKlDet~ 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRGPGLAG--CILTKLDEAA 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhccCCCCE--EEEeCCCCcc
Confidence 799999999332221 1112121 23347899999865422 223333344455553 4689999765
No 460
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.30 E-value=0.0085 Score=57.17 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.+.++|||||+.... .+...+..+|.+|+|+++.......+.+.++.+...+.+.+.+++|+.|..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 578999999985443 344556789999999998765555566666666777887567899999864
No 461
>PHA02518 ParA-like protein; Provisional
Probab=97.30 E-value=0.0039 Score=57.81 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=43.7
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH---c--CCCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ---V--GVPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~---~--~ip~iivviNK~D~~ 214 (482)
..+.++||||||... ..+...+..+|.+|++++.+.-......+.++.+.. . +.+.+.++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 356899999999643 345566778999999999886444333333333332 1 466566777887644
No 462
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.28 E-value=0.0025 Score=51.07 Aligned_cols=75 Identities=29% Similarity=0.241 Sum_probs=58.4
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc-cccceeecCCeEEEEEccccccCc-cc
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ-KTLDEAMAGDNVGLLLRGVQKADI-QR 372 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~~~~i-~~ 372 (482)
+..|.++...++.|.+++..|.+|+|++||.+..+.. ..+|+++...+ +.+++|.||+.|.+. ++ .++ ..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~----~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~--~~~P~a 73 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTT----YGKVRAMFDENGKRVKEAGPSTPVEIL--GL--KGVPQA 73 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEccc----ccEEEEEECCCCCCCCEECCCCcEEEc--CC--CCCCCC
Confidence 3467788888999999999999999999999966543 45999998765 789999999999874 32 223 45
Q ss_pred CeEEe
Q 011581 373 GMVLA 377 (482)
Q Consensus 373 G~vl~ 377 (482)
||.+.
T Consensus 74 Gd~~~ 78 (95)
T cd03702 74 GDKFL 78 (95)
T ss_pred CCEEE
Confidence 65553
No 463
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.28 E-value=0.0033 Score=62.98 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+-.++.|.-|+|||||+++|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 44688899999999999999864
No 464
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.25 E-value=0.00065 Score=62.07 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=51.7
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcC--CCcEEEEEecCCCCChHH
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG--VPNMVVFLNKQDQVDDEE 218 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~--ip~iivviNK~D~~~~~~ 218 (482)
.+.++|||||+..... +...+..+|.+|++++.+.-....+...+..+...+ .+.+.+++||.+.-....
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~~~ 165 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGNESK 165 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCHHH
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCccch
Confidence 4889999998865443 455667899999999987655566666777777776 334678999998876443
No 465
>PRK13695 putative NTPase; Provisional
Probab=97.24 E-value=0.0016 Score=58.61 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=62.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh-hhhcCCceeee-e---eeEeec----C--CeEEEEEe
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP-EERARGITINT-A---TVEYET----E--NRHYAHVD 154 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-~e~~~g~Ti~~-~---~~~~~~----~--~~~i~liD 154 (482)
.+|+++|.+|+|||||+..+.+.....|... ..+...... .....|..+.. . ...+.. . ...=.+.|
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV--GGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVN 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE--EEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEe
Confidence 4799999999999999999887654433210 001100000 00111111100 0 000000 0 00111334
Q ss_pred CCCchhhHHHHH-hhcccCCeEEEeec---CCCCChHHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 155 CPGHADYVKNMI-TGAAQMDGAILVVS---GADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 155 tPG~~~~~~~~~-~~~~~~D~~ilVvd---a~~g~~~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
.-|.+.+..... ..+..+|+ +++| ..+....+..+.+..+...+.+ +|+++||.
T Consensus 79 lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~-~i~v~h~~ 136 (174)
T PRK13695 79 LEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKP-VIATLHRR 136 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCe-EEEEECch
Confidence 434444444333 23345666 6888 5556667777777777777887 88899984
No 466
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.24 E-value=0.0034 Score=51.33 Aligned_cols=80 Identities=24% Similarity=0.219 Sum_probs=60.9
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeeccc-----------ccceeecCCeEEEEEc
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQK-----------TLDEAMAGDNVGLLLR 363 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~-----------~v~~a~aG~~v~l~l~ 363 (482)
+..|.++...+|.|+++.-.|.+|+|++||.+.++........+|+++...+. .++++.|..-+-+...
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 35677888899999999999999999999999887654334579999987664 6888887766666655
Q ss_pred cccccCcccCeEE
Q 011581 364 GVQKADIQRGMVL 376 (482)
Q Consensus 364 ~~~~~~i~~G~vl 376 (482)
++ +++..|+-+
T Consensus 82 gL--~~v~aG~~~ 92 (110)
T cd03703 82 DL--EKAIAGSPL 92 (110)
T ss_pred CC--ccccCCCEE
Confidence 44 334566654
No 467
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.21 E-value=0.0018 Score=60.63 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=52.0
Q ss_pred eEEEEEeCCCchhhHHH-HHhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 148 RHYAHVDCPGHADYVKN-MITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~~-~~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+.++|+|||-....... +...+. .+|.+++|+........++.+.+..++..+.+..-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 88999999864333222 233333 35899999999988889999999999999988777899999865
No 468
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.18 E-value=0.0017 Score=75.40 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=64.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhh--hcCCceeeeeeeEeecCCeEEEEEeCCCc----h-
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE--RARGITINTATVEYETENRHYAHVDCPGH----A- 159 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e--~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----~- 159 (482)
=..|+|++|+|||||+..- +. .+.. .+....+ +..|-|.+...+ | ..+-++|||+|. .
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl-------~~pl---~~~~~~~~~~~~~~t~~c~ww-f---~~~avliDtaG~y~~~~~ 177 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GL-------KFPL---AERLGAAALRGVGGTRNCDWW-F---TDEAVLIDTAGRYTTQDS 177 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CC-------CCcC---chhhccccccCCCCCcccceE-e---cCCEEEEcCCCccccCCC
Confidence 3799999999999999875 10 0100 0000001 112223322222 1 244679999992 1
Q ss_pred ----------hhHHHHHhh--cccCCeEEEeecCCCCC---hH-------HHHHHHHHH-HH--cCCCcEEEEEecCCCC
Q 011581 160 ----------DYVKNMITG--AAQMDGAILVVSGADGP---MP-------QTKEHILLA-KQ--VGVPNMVVFLNKQDQV 214 (482)
Q Consensus 160 ----------~~~~~~~~~--~~~~D~~ilVvda~~g~---~~-------~t~e~l~~~-~~--~~ip~iivviNK~D~~ 214 (482)
.|+....+. -+-.|++|++||+.+=. .. ..+..+..+ .. ..+| +.|++||||++
T Consensus 178 ~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~P-VYvv~Tk~Dll 256 (1169)
T TIGR03348 178 DPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFP-VYLVLTKADLL 256 (1169)
T ss_pred cccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecchhh
Confidence 112211111 13479999999988522 11 112222222 22 3578 88999999988
Q ss_pred C-hHHHHHHHH
Q 011581 215 D-DEELLQLVE 224 (482)
Q Consensus 215 ~-~~~~~~~i~ 224 (482)
. -.+.+..+.
T Consensus 257 ~GF~~~f~~l~ 267 (1169)
T TIGR03348 257 AGFEEFFADLD 267 (1169)
T ss_pred cCHHHHHHhCC
Confidence 6 344554443
No 469
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.12 E-value=0.0088 Score=55.31 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=51.5
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+.++|||||...... .....+..+|.+|+|+++.........+.++.+...+.+.+-+|+||.|...
T Consensus 127 ~yD~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTVT-DAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCccccc-hHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 5779999999732211 1122335689999999998887788888888899899887778999999653
No 470
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.12 E-value=0.003 Score=61.05 Aligned_cols=73 Identities=32% Similarity=0.294 Sum_probs=53.4
Q ss_pred cCCeEEEeecCCCCCh--HHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcch
Q 011581 171 QMDGAILVVSGADGPM--PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSA 248 (482)
Q Consensus 171 ~~D~~ilVvda~~g~~--~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa 248 (482)
..|-+++|+.+.++.. .+.-+.|-.+...|+. -++++||+|+.++++... ++.......++ .+++.+|+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~-pvIvlnK~DL~~~~~~~~---~~~~~~y~~~g-----y~v~~~s~ 149 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIE-PVIVLNKIDLLDDEEAAV---KELLREYEDIG-----YPVLFVSA 149 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCc-EEEEEEccccCcchHHHH---HHHHHHHHhCC-----eeEEEecC
Confidence 4677888888887654 4455667778888998 457899999998665543 35555666666 57899999
Q ss_pred hhhH
Q 011581 249 LLAL 252 (482)
Q Consensus 249 ~~g~ 252 (482)
++++
T Consensus 150 ~~~~ 153 (301)
T COG1162 150 KNGD 153 (301)
T ss_pred cCcc
Confidence 9876
No 471
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.0022 Score=62.46 Aligned_cols=124 Identities=22% Similarity=0.261 Sum_probs=69.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---hh------hcCCceeeee-------eeEe----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---EE------RARGITINTA-------TVEY---- 143 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e------~~~g~Ti~~~-------~~~~---- 143 (482)
...-|.++|-.|+||||-++.|.+.....|....--+. |.+. .| ..-|+.+-.. ...|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~--DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAG--DTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEec--chHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 35678999999999999999999887777763221110 1111 01 1223332221 1111
Q ss_pred --ecCCeEEEEEeCCCc----hhhHHHH---Hhhcc-----cCCeEEEeecCCCCCh--HHHHHHHHHHHHcCCCcEEEE
Q 011581 144 --ETENRHYAHVDCPGH----ADYVKNM---ITGAA-----QMDGAILVVSGADGPM--PQTKEHILLAKQVGVPNMVVF 207 (482)
Q Consensus 144 --~~~~~~i~liDtPG~----~~~~~~~---~~~~~-----~~D~~ilVvda~~g~~--~~t~e~l~~~~~~~ip~iivv 207 (482)
...+..+.|+||+|. .....++ .+-+. .++-+++++||..|-. .|.+.+- ...++. =++
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~---eav~l~--GiI 290 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN---EAVGLD--GII 290 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH---HhcCCc--eEE
Confidence 124788999999993 2222222 22222 2344888889998764 3333321 223565 356
Q ss_pred EecCCCC
Q 011581 208 LNKQDQV 214 (482)
Q Consensus 208 iNK~D~~ 214 (482)
++|+|-.
T Consensus 291 lTKlDgt 297 (340)
T COG0552 291 LTKLDGT 297 (340)
T ss_pred EEecccC
Confidence 8999943
No 472
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.001 Score=67.13 Aligned_cols=137 Identities=20% Similarity=0.149 Sum_probs=77.4
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccc-cccCChhhhcCCceeeee----------ee-------
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYD-EIDAAPEERARGITINTA----------TV------- 141 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~-~~d~~~~e~~~g~Ti~~~----------~~------- 141 (482)
++++....|++||-.|+||||=+..+...+....-....-+- .......|+-+.+..... ..
T Consensus 373 r~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a 452 (587)
T KOG0781|consen 373 RRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAA 452 (587)
T ss_pred HhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChH
Confidence 345577899999999999999999998766554431111000 000111121111111100 00
Q ss_pred --------EeecCCeEEEEEeCCCchhhHHHHHhh------cccCCeEEEeecCCCCCh--HHHHHHHHHHHHcCCCcE-
Q 011581 142 --------EYETENRHYAHVDCPGHADYVKNMITG------AAQMDGAILVVSGADGPM--PQTKEHILLAKQVGVPNM- 204 (482)
Q Consensus 142 --------~~~~~~~~i~liDtPG~~~~~~~~~~~------~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~~~ip~i- 204 (482)
.-...+..++||||+|...-....+.. +..+|.+++|-.|--|-. .|.+++=+.+.....|+.
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~i 532 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLI 532 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCcccc
Confidence 012347889999999943332222222 247899999987765543 455555455555543333
Q ss_pred -EEEEecCCCCCh
Q 011581 205 -VVFLNKQDQVDD 216 (482)
Q Consensus 205 -ivviNK~D~~~~ 216 (482)
-++++|+|.+++
T Consensus 533 d~~~ltk~dtv~d 545 (587)
T KOG0781|consen 533 DGILLTKFDTVDD 545 (587)
T ss_pred ceEEEEeccchhh
Confidence 267899999873
No 473
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.01 E-value=0.0067 Score=57.34 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=43.9
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH------HcCCCcEEEEEecCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK------QVGVPNMVVFLNKQD 212 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~------~~~ip~iivviNK~D 212 (482)
+.+.++||||||+.. ..+...+..+|.+|+.+.++.-....+.+.+..+. ..+++ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 467899999999765 34455677899999998887644444444433322 23666 558899987
No 474
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.00 E-value=0.00054 Score=67.68 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
+..++++|+|.+|+|||++||+|... .....-...|+|.......+ +..+.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~---------------k~C~vg~~pGvT~smqeV~L---dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR---------------KACNVGNVPGVTRSMQEVKL---DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh---------------ccccCCCCccchhhhhheec---cCCceeccCCc
No 475
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.99 E-value=0.0013 Score=59.15 Aligned_cols=46 Identities=22% Similarity=0.124 Sum_probs=34.3
Q ss_pred CeEEEeecCCCCChHHHHHHHHH--HHHcCCCcEEEEEecCCCCChHHH
Q 011581 173 DGAILVVSGADGPMPQTKEHILL--AKQVGVPNMVVFLNKQDQVDDEEL 219 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l~~--~~~~~ip~iivviNK~D~~~~~~~ 219 (482)
|++++|+|+.........+.... +...+.| +|+|+||+|+++.+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~~~~l 48 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVPKENV 48 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCC-EEEEEehhhcCCHHHH
Confidence 78999999998776655555555 3344667 7899999999875443
No 476
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.98 E-value=0.0061 Score=56.80 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=40.0
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHc----CCCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQV----GVPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~----~ip~iivviNK~D~~ 214 (482)
+.+.++||||||....... ...+ ..+|.++++++.+.-........++.++.+ +.+...+++||+|..
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 4578999999885421110 1122 379999999987643322223333333332 444455899999964
No 477
>CHL00175 minD septum-site determining protein; Validated
Probab=96.98 E-value=0.011 Score=57.76 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.+.++|||||+.... .....+..+|.+++|++............+..+...+.+.+-+++|+++..
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 578999999986432 334455679999999998766566666777777777776677899999853
No 478
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.94 E-value=0.0051 Score=65.95 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=62.7
Q ss_pred eEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccc-cCcccCeEEeC
Q 011581 300 DVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQK-ADIQRGMVLAK 378 (482)
Q Consensus 300 ~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 378 (482)
.+|+.+. +.++..+|..|.|+.|..| +.+.+. .-.+|.||+.+++++++|..|+-|++.+.+... .+++.||+|..
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v-~r~~~~-~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~ 549 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPL-MKDDGE-TVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYV 549 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeE-EecCCE-EEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEE
Confidence 6888765 7999999999999999987 344333 236899999999999999999999999987432 68999999964
No 479
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.94 E-value=0.0093 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.6
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHh
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+.-...+|+|+|+.++|||||+++|...
T Consensus 214 vr~~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 214 VRPFFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred HhhCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455789999999999999999999854
No 480
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.93 E-value=0.00063 Score=66.92 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=30.3
Q ss_pred HHHhhhhhhccCCceEEEEEecCCccHHHHHHHHHHh
Q 011581 72 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 72 ~~~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..+...++...+..+.|+++|.+|+|||+++|.|-..
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhc
Confidence 3344556777888999999999999999999999643
No 481
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.89 E-value=0.013 Score=55.93 Aligned_cols=27 Identities=22% Similarity=0.055 Sum_probs=21.9
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHH
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
...+.+--.+.|.-|+|||||+|.++.
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHc
Confidence 344555667889999999999999984
No 482
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.88 E-value=0.028 Score=54.41 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH----HcCCCcEEEEEecCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK----QVGVPNMVVFLNKQD 212 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~----~~~ip~iivviNK~D 212 (482)
+.+.++||||||..... .+...+..+|.+|+++.+...........+..+. ..+++..-+++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 35789999999854221 1233466799999999876433322223333222 345664457889976
No 483
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.023 Score=49.60 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGN 114 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~ 114 (482)
+..++|.+.|.+|+|||||+..+...+...|.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 34679999999999999999999877766553
No 484
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.78 E-value=0.014 Score=56.52 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=41.4
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH----HcCCCcEEEEEecCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK----QVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~----~~~ip~iivviNK~D~ 213 (482)
.+.+.||||||..... .+...+..+|.+|+++.+.........+.++.+. ..+++...+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 4679999999854321 1233467899999999887544333333333332 2355544578999983
No 485
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.72 E-value=0.12 Score=55.85 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=26.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCC
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGN 114 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~ 114 (482)
+...-|+|+|..|+|||||+.+|+..+...|.
T Consensus 8 ~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~ 39 (597)
T PRK14491 8 LSIPLLGFCAYSGTGKTTLLEQLIPELNQRGL 39 (597)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHHhCCc
Confidence 34557899999999999999999988776653
No 486
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.70 E-value=0.0095 Score=64.05 Aligned_cols=76 Identities=25% Similarity=0.242 Sum_probs=61.8
Q ss_pred eEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccc-cCcccCeEEeC
Q 011581 300 DVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQK-ADIQRGMVLAK 378 (482)
Q Consensus 300 ~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~ 378 (482)
.+|+.+. +.|+..+|..|.|+.|..|. .+.+. ...+|.||+.+++++++|..|+-|++.+.+... .+++.||+|-.
T Consensus 475 ~vf~~~~-~~IaGc~V~~G~i~~~~~v~-r~~g~-~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSD-PAIVGVEVLGGTIKPGVPLI-KEDGK-RVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCC-CeEEEEEEEeCEEecCCEEE-EECCE-EEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 6888765 78999999999999999863 33443 347899999999999999999999999986421 58888998853
No 487
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.67 E-value=0.045 Score=52.91 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH----cCCCcEEEEEecCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ----VGVPNMVVFLNKQDQ 213 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~----~~ip~iivviNK~D~ 213 (482)
+.+.++||||||..... .+...+..+|.+|+++...........+.++.+.. .+++..-+++|++|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 35789999999853211 11134677999999987654333333334333332 356645678899875
No 488
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.61 E-value=0.013 Score=54.86 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=55.4
Q ss_pred eeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC--------ChHHHHHHHHHHHHc-------CCCcE
Q 011581 140 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQV-------GVPNM 204 (482)
Q Consensus 140 ~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~~t~e~l~~~~~~-------~ip~i 204 (482)
...|..+...+..+|..|++|-...++.-....-++|+|+.++.- -+...+|.+.+.+.. .+. +
T Consensus 194 et~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tis-v 272 (379)
T KOG0099|consen 194 ETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTIS-V 272 (379)
T ss_pred eEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhh-e
Confidence 344555677789999999999999999999999999999988752 123334555444331 344 7
Q ss_pred EEEEecCCCCC
Q 011581 205 VVFLNKQDQVD 215 (482)
Q Consensus 205 ivviNK~D~~~ 215 (482)
|+++||-|+..
T Consensus 273 IlFLNKqDlla 283 (379)
T KOG0099|consen 273 ILFLNKQDLLA 283 (379)
T ss_pred eEEecHHHHHH
Confidence 89999999875
No 489
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.56 E-value=0.0096 Score=53.36 Aligned_cols=27 Identities=30% Similarity=0.194 Sum_probs=22.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
...-++|+|..|+|||||+.+|+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 345789999999999999999987644
No 490
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.54 E-value=0.017 Score=46.45 Aligned_cols=63 Identities=30% Similarity=0.208 Sum_probs=51.7
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec-ccccceeecCCeEEEE
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF-QKTLDEAMAGDNVGLL 361 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~ 361 (482)
+..|.++-..++.|.+++..|.+|+|++||.+..+.. ..+|+.+... .+.+..|.|++.|.+.
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~----~GkVr~~~d~~g~~v~~a~Ps~~v~i~ 65 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGT----YGKIRTMVDENGKALLEAGPSTPVEIL 65 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCc----cceEEEEECCCCCCccccCCCCCEEEe
Confidence 3467778888999999999999999999999966543 4689998864 4679999999988554
No 491
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=96.47 E-value=0.15 Score=50.66 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred CeEEEEEeCCCchh---hHHHHHhhcccCCeEEEeecCCCCCh---HHHHHHHHHHHHcC--CCcEEEEEecCCCC
Q 011581 147 NRHYAHVDCPGHAD---YVKNMITGAAQMDGAILVVSGADGPM---PQTKEHILLAKQVG--VPNMVVFLNKQDQV 214 (482)
Q Consensus 147 ~~~i~liDtPG~~~---~~~~~~~~~~~~D~~ilVvda~~g~~---~~t~e~l~~~~~~~--ip~iivviNK~D~~ 214 (482)
...|.|+|++|... |....... .+|.+++|....-... ......+.+++.++ ++.+-+|+||.|..
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~i~~~--~ad~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~ 220 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLPIARD--MAQKVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT 220 (329)
T ss_pred cCCEEEEecCCcceeccccchhhhc--CCceEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc
Confidence 46899999999543 33222222 3666666654321111 12455666777664 55567899999863
No 492
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.40 E-value=0.02 Score=50.62 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=23.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g 113 (482)
.-++|+|..|+|||||+++|...+...|
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 3589999999999999999987766555
No 493
>PRK01889 GTPase RsgA; Reviewed
Probab=96.40 E-value=0.0031 Score=63.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+++++|.+|+|||||+|.|++.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999875
No 494
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.37 E-value=0.023 Score=55.72 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=39.9
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc----CCCcEEEEEecCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV----GVPNMVVFLNKQD 212 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~----~ip~iivviNK~D 212 (482)
++.+.||||||.... ......+..+|.+|+++++..-........++.++.. +++..-+++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 578999999986321 1123446779999999987653333333333333322 4444457889987
No 495
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.051 Score=57.93 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=48.6
Q ss_pred EEeeCCCc-eEEEEEEEeeeeecCCEEEEecCCccc-eeEEEEEeecccccceeecCCeEEEEEcc
Q 011581 301 VFSITGRG-TVATGRVERGTIKVGETVDLVGLKETR-NFTVTGVEMFQKTLDEAMAGDNVGLLLRG 364 (482)
Q Consensus 301 v~~v~g~G-~v~~G~v~sG~l~~g~~v~i~p~~~~~-~~~V~~i~~~~~~v~~a~aG~~v~l~l~~ 364 (482)
+|+ .++ .|+...|..|.|+.|..+.+.. .++. -.+|.||+++|.+|+.|.-||-|++.+.+
T Consensus 945 ifN--~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 945 IFN--KRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred hcc--CCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 554 344 4667799999999999997654 3332 56899999999999999999999998754
No 496
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.34 E-value=0.098 Score=50.22 Aligned_cols=70 Identities=13% Similarity=0.039 Sum_probs=50.0
Q ss_pred CCeEEEEEeCCCchhh---HH--HH----Hhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHADY---VK--NM----ITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~---~~--~~----~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
..+.++++|||--... +. .. ...+. ..+.+++|+....-...++++.+..+...+++..-+|+||+...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 4678999999863221 11 11 11222 34688999998877778889999999999998667899998764
Q ss_pred C
Q 011581 215 D 215 (482)
Q Consensus 215 ~ 215 (482)
.
T Consensus 203 ~ 203 (254)
T cd00550 203 D 203 (254)
T ss_pred c
Confidence 3
No 497
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.34 E-value=0.019 Score=57.51 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=27.4
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGN 114 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~ 114 (482)
.....++.++|++|+|||||..-|++.....|.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~ 102 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGR 102 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCc
Confidence 456678999999999999999999887665553
No 498
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.34 E-value=0.016 Score=41.32 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=24.6
Q ss_pred HHHhhcc-cCCeEEEeecCCC--CCh--HHHHHHHHHHH-Hc-CCCcEEEEEecCC
Q 011581 164 NMITGAA-QMDGAILVVSGAD--GPM--PQTKEHILLAK-QV-GVPNMVVFLNKQD 212 (482)
Q Consensus 164 ~~~~~~~-~~D~~ilVvda~~--g~~--~~t~e~l~~~~-~~-~ip~iivviNK~D 212 (482)
+.+.+++ ..+++++++|.++ |.. .|. ..++.++ .. +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCC-EEEEEeccC
Confidence 4445554 5789999999997 332 222 2222333 33 677 899999998
No 499
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.33 E-value=0.18 Score=47.85 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=39.9
Q ss_pred eEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHHc--CCCcEEEEEecCCCCC
Q 011581 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQV--GVPNMVVFLNKQDQVD 215 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~~--~ip~iivviNK~D~~~ 215 (482)
+.+.|||||+... ..+...+..+|.+++++....-........+ .+.... ..+ +-+++|+.|...
T Consensus 115 ~D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~-~~iv~n~~~~~~ 182 (246)
T TIGR03371 115 RDWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIG-PHFLINQFDPAR 182 (246)
T ss_pred CCEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhccccccc-ceEEeeccCcch
Confidence 3799999998432 3445666789999999988642222233222 222212 223 567899998643
No 500
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.33 E-value=0.03 Score=54.05 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=23.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCC
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGN 114 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~ 114 (482)
.|+|+|.-|+||||++-.|...+...|.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~ 30 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGK 30 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCC
Confidence 5888899999999999999877665554
Done!