Query 011581
Match_columns 482
No_of_seqs 459 out of 3500
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c78_A Elongation factor TU-A; 100.0 1.3E-68 4.6E-73 548.0 47.8 399 79-482 5-405 (405)
2 1d2e_A Elongation factor TU (E 100.0 8.9E-68 3E-72 540.0 46.2 386 83-482 1-387 (397)
3 3j2k_7 ERF3, eukaryotic polype 100.0 3.4E-67 1.2E-71 541.4 45.6 385 82-482 14-439 (439)
4 1f60_A Elongation factor EEF1A 100.0 4.7E-66 1.6E-70 535.6 37.7 389 81-482 3-441 (458)
5 1jny_A EF-1-alpha, elongation 100.0 5.5E-65 1.9E-69 525.2 37.6 387 82-482 3-429 (435)
6 3avx_A Elongation factor TS, e 100.0 2.5E-64 8.5E-69 552.5 43.2 388 80-482 291-678 (1289)
7 3p26_A Elongation factor 1 alp 100.0 2.4E-63 8.2E-68 519.6 41.5 392 81-481 29-476 (483)
8 3mca_A HBS1, elongation factor 100.0 2.5E-65 8.4E-70 544.1 24.5 387 81-481 173-592 (592)
9 1r5b_A Eukaryotic peptide chai 100.0 7.1E-65 2.4E-69 528.1 26.2 386 82-482 40-467 (467)
10 3izq_1 HBS1P, elongation facto 100.0 1.3E-62 4.5E-67 524.4 35.1 394 78-481 160-610 (611)
11 1zun_B Sulfate adenylate trans 100.0 6.7E-60 2.3E-64 487.3 37.7 380 83-479 22-434 (434)
12 1wb1_A Translation elongation 100.0 2E-60 6.8E-65 495.8 19.4 363 82-481 16-394 (482)
13 2elf_A Protein translation elo 100.0 2.6E-58 8.7E-63 464.0 31.5 337 87-477 23-369 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 4.9E-57 1.7E-61 463.0 41.0 350 81-478 6-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 3.4E-57 1.2E-61 463.7 38.6 349 82-478 5-407 (408)
16 3sjy_A Translation initiation 100.0 2.7E-54 9.1E-59 441.6 36.9 362 81-478 4-402 (403)
17 3vqt_A RF-3, peptide chain rel 100.0 1.3E-39 4.5E-44 343.0 26.9 269 84-381 30-401 (548)
18 2ywe_A GTP-binding protein LEP 100.0 1.8E-37 6.3E-42 327.6 27.4 268 84-381 5-281 (600)
19 3cb4_D GTP-binding protein LEP 100.0 9.1E-37 3.1E-41 323.0 26.0 268 84-381 3-279 (599)
20 4fn5_A EF-G 1, elongation fact 100.0 8.1E-37 2.8E-41 332.3 22.8 270 84-381 12-405 (709)
21 3tr5_A RF-3, peptide chain rel 100.0 6.1E-36 2.1E-40 313.5 27.0 268 84-380 12-382 (528)
22 3e1y_E Eukaryotic peptide chai 100.0 2.3E-36 7.8E-41 278.5 19.9 184 290-482 3-201 (204)
23 3j25_A Tetracycline resistance 100.0 1.1E-38 3.8E-43 342.6 1.8 265 85-380 2-330 (638)
24 2h5e_A Peptide chain release f 100.0 2.2E-35 7.5E-40 309.6 23.8 271 84-381 12-384 (529)
25 2rdo_7 EF-G, elongation factor 100.0 2.8E-34 9.6E-39 311.1 30.4 271 83-381 8-402 (704)
26 1dar_A EF-G, elongation factor 100.0 3.6E-33 1.2E-37 302.1 29.8 271 83-381 10-394 (691)
27 2xex_A Elongation factor G; GT 100.0 7.2E-33 2.5E-37 299.8 26.8 271 83-380 8-393 (693)
28 2dy1_A Elongation factor G; tr 100.0 5.6E-33 1.9E-37 299.6 23.3 268 83-381 7-367 (665)
29 1g7s_A Translation initiation 100.0 7.9E-33 2.7E-37 293.2 20.8 259 84-381 4-329 (594)
30 3izy_P Translation initiation 100.0 6.3E-35 2.1E-39 304.5 4.3 255 84-382 3-261 (537)
31 1zo1_I IF2, translation initia 100.0 7.8E-34 2.7E-38 293.9 11.6 249 84-380 3-258 (501)
32 1n0u_A EF-2, elongation factor 100.0 3.4E-30 1.2E-34 284.2 24.5 300 77-380 11-473 (842)
33 4dhe_A Probable GTP-binding pr 99.9 5.7E-21 2E-25 178.4 15.4 170 83-287 27-213 (223)
34 1wf3_A GTP-binding protein; GT 99.8 2.8E-20 9.6E-25 181.9 17.5 157 84-284 6-172 (301)
35 2lkc_A Translation initiation 99.8 9.8E-21 3.3E-25 169.9 11.8 160 83-283 6-169 (178)
36 3iev_A GTP-binding protein ERA 99.8 2.6E-20 8.7E-25 183.0 15.1 162 83-285 8-182 (308)
37 2dyk_A GTP-binding protein; GT 99.8 3.4E-20 1.2E-24 163.4 13.3 153 86-284 2-161 (161)
38 2efe_B Small GTP-binding prote 99.8 8.4E-20 2.9E-24 164.2 13.4 161 82-285 9-175 (181)
39 3pqc_A Probable GTP-binding pr 99.8 2.8E-19 9.7E-24 162.7 16.6 160 83-284 21-193 (195)
40 2hjg_A GTP-binding protein ENG 99.8 3E-20 1E-24 191.3 11.0 150 84-253 174-335 (436)
41 1svi_A GTP-binding protein YSX 99.8 3.2E-19 1.1E-23 162.6 15.6 160 83-283 21-193 (195)
42 3i8s_A Ferrous iron transport 99.8 4.3E-20 1.5E-24 178.4 9.8 156 84-285 2-169 (274)
43 2hxs_A RAB-26, RAS-related pro 99.8 9.8E-20 3.4E-24 163.3 11.2 161 82-284 3-172 (178)
44 1ega_A Protein (GTP-binding pr 99.8 2E-19 6.8E-24 176.0 13.7 157 85-284 8-174 (301)
45 2fg5_A RAB-22B, RAS-related pr 99.8 1.8E-19 6.1E-24 164.4 12.3 161 83-284 21-185 (192)
46 1wms_A RAB-9, RAB9, RAS-relate 99.8 7.2E-19 2.5E-23 157.5 16.0 159 82-283 4-172 (177)
47 3clv_A RAB5 protein, putative; 99.8 3.4E-19 1.1E-23 163.2 13.8 107 148-282 93-201 (208)
48 2g6b_A RAS-related protein RAB 99.8 3.2E-19 1.1E-23 160.2 13.0 159 83-283 8-172 (180)
49 4dcu_A GTP-binding protein ENG 99.8 1.2E-19 4.1E-24 187.9 11.6 151 83-253 193-355 (456)
50 1r2q_A RAS-related protein RAB 99.8 1.8E-19 6.3E-24 159.9 11.1 160 84-284 5-168 (170)
51 1ek0_A Protein (GTP-binding pr 99.8 1.8E-19 6.3E-24 159.9 11.1 160 84-284 2-168 (170)
52 3tkl_A RAS-related protein RAB 99.8 2.2E-19 7.7E-24 163.7 11.9 158 83-283 14-177 (196)
53 1kao_A RAP2A; GTP-binding prot 99.8 2.2E-19 7.6E-24 158.7 11.5 156 84-282 2-163 (167)
54 1upt_A ARL1, ADP-ribosylation 99.8 3.3E-19 1.1E-23 158.7 12.4 157 84-283 6-167 (171)
55 1zj6_A ADP-ribosylation factor 99.8 2.8E-19 9.7E-24 162.1 12.2 161 83-286 14-179 (187)
56 1mh1_A RAC1; GTP-binding, GTPa 99.8 4.2E-19 1.4E-23 160.2 13.3 166 83-286 3-181 (186)
57 2bme_A RAB4A, RAS-related prot 99.8 4E-19 1.4E-23 160.6 13.0 158 83-283 8-171 (186)
58 4gzl_A RAS-related C3 botulinu 99.8 4.6E-19 1.6E-23 163.4 13.7 162 81-282 26-202 (204)
59 1zd9_A ADP-ribosylation factor 99.8 8.9E-19 3E-23 159.1 15.4 160 83-284 20-184 (188)
60 3bc1_A RAS-related protein RAB 99.8 5.3E-19 1.8E-23 160.6 13.6 158 83-283 9-183 (195)
61 3iby_A Ferrous iron transport 99.8 1E-19 3.4E-24 173.9 9.1 151 86-282 2-164 (256)
62 4bas_A ADP-ribosylation factor 99.8 5.9E-19 2E-23 161.3 13.9 160 82-283 14-187 (199)
63 3t1o_A Gliding protein MGLA; G 99.8 2.7E-19 9.2E-24 163.1 11.6 166 82-283 11-190 (198)
64 1z0j_A RAB-22, RAS-related pro 99.8 2.8E-19 9.6E-24 158.8 11.2 160 84-284 5-168 (170)
65 2fh5_B SR-beta, signal recogni 99.8 1.2E-18 4.1E-23 161.5 15.4 117 81-216 3-130 (214)
66 1z0f_A RAB14, member RAS oncog 99.8 3E-19 1E-23 160.0 10.9 160 83-283 13-176 (179)
67 2y8e_A RAB-protein 6, GH09086P 99.8 4E-19 1.4E-23 159.2 11.6 159 83-284 12-176 (179)
68 3llu_A RAS-related GTP-binding 99.8 1.4E-18 4.7E-23 159.0 15.4 164 82-282 17-194 (196)
69 1r8s_A ADP-ribosylation factor 99.8 1.8E-18 6.2E-23 152.9 15.7 156 86-284 1-161 (164)
70 2h57_A ADP-ribosylation factor 99.8 5.6E-19 1.9E-23 160.6 12.5 159 84-283 20-185 (190)
71 2il1_A RAB12; G-protein, GDP, 99.8 2.4E-19 8.4E-24 163.5 10.1 157 84-282 25-187 (192)
72 1z06_A RAS-related protein RAB 99.8 7.2E-19 2.4E-23 159.8 12.7 161 83-283 18-186 (189)
73 2ew1_A RAS-related protein RAB 99.8 6.5E-19 2.2E-23 162.2 12.6 158 83-283 24-187 (201)
74 2h17_A ADP-ribosylation factor 99.8 7.4E-19 2.5E-23 158.6 12.5 157 83-282 19-180 (181)
75 2nzj_A GTP-binding protein REM 99.8 6.5E-19 2.2E-23 157.3 11.9 159 83-283 2-167 (175)
76 2fu5_C RAS-related protein RAB 99.8 2.2E-19 7.6E-24 162.0 8.5 158 83-283 6-169 (183)
77 2hup_A RAS-related protein RAB 99.8 1.1E-18 3.9E-23 160.4 13.3 159 83-283 27-191 (201)
78 3tw8_B RAS-related protein RAB 99.8 3.2E-19 1.1E-23 160.1 9.4 159 82-283 6-169 (181)
79 2wji_A Ferrous iron transport 99.8 4.2E-19 1.4E-23 157.9 9.9 154 84-283 2-163 (165)
80 1u8z_A RAS-related protein RAL 99.8 1.1E-18 3.8E-23 154.4 12.5 158 84-283 3-165 (168)
81 1z08_A RAS-related protein RAB 99.8 6.4E-19 2.2E-23 156.6 11.1 158 83-283 4-167 (170)
82 1ksh_A ARF-like protein 2; sma 99.8 1.8E-18 6.1E-23 156.5 14.1 159 83-284 16-179 (186)
83 1vg8_A RAS-related protein RAB 99.8 7.3E-19 2.5E-23 161.8 11.7 159 82-283 5-173 (207)
84 1ky3_A GTP-binding protein YPT 99.8 1.3E-18 4.4E-23 156.3 12.8 160 82-282 5-175 (182)
85 3qq5_A Small GTP-binding prote 99.8 8.8E-20 3E-24 185.6 5.7 158 83-286 32-197 (423)
86 1c1y_A RAS-related protein RAP 99.8 7E-19 2.4E-23 155.8 10.9 158 84-283 2-165 (167)
87 1m2o_B GTP-binding protein SAR 99.8 3.3E-18 1.1E-22 155.8 15.0 157 83-282 21-189 (190)
88 1g16_A RAS-related protein SEC 99.8 8.1E-19 2.8E-23 155.8 10.7 155 85-283 3-163 (170)
89 2qu8_A Putative nucleolar GTP- 99.8 2.1E-18 7.3E-23 161.8 14.2 162 84-283 28-203 (228)
90 1z2a_A RAS-related protein RAB 99.8 5.9E-19 2E-23 156.4 9.7 156 84-282 4-164 (168)
91 2erx_A GTP-binding protein DI- 99.8 1.2E-18 4.2E-23 154.8 11.6 157 85-284 3-166 (172)
92 1zbd_A Rabphilin-3A; G protein 99.8 1.1E-18 3.8E-23 160.3 11.6 146 84-252 7-156 (203)
93 2bcg_Y Protein YP2, GTP-bindin 99.8 7.9E-19 2.7E-23 161.8 10.6 158 83-283 6-169 (206)
94 3q72_A GTP-binding protein RAD 99.8 1.3E-18 4.3E-23 154.2 11.5 155 85-282 2-161 (166)
95 4dsu_A GTPase KRAS, isoform 2B 99.8 1.2E-18 4.1E-23 157.7 11.4 155 84-283 3-164 (189)
96 2gco_A H9, RHO-related GTP-bin 99.8 3.1E-18 1.1E-22 157.4 14.3 160 84-282 24-197 (201)
97 3kkq_A RAS-related protein M-R 99.8 1.3E-18 4.4E-23 156.9 11.5 157 82-282 15-179 (183)
98 2gf9_A RAS-related protein RAB 99.8 5.3E-19 1.8E-23 160.6 9.0 159 84-283 21-183 (189)
99 3t5g_A GTP-binding protein RHE 99.8 1.4E-18 4.9E-23 156.4 11.7 156 84-283 5-167 (181)
100 3k53_A Ferrous iron transport 99.8 5.7E-19 1.9E-23 170.3 9.4 154 84-283 2-164 (271)
101 2a9k_A RAS-related protein RAL 99.8 2.2E-18 7.4E-23 155.6 12.7 158 82-283 15-179 (187)
102 1mky_A Probable GTP-binding pr 99.8 2.7E-18 9.3E-23 176.9 15.1 154 86-284 2-165 (439)
103 1fzq_A ADP-ribosylation factor 99.8 5.2E-18 1.8E-22 153.2 15.2 159 83-284 14-177 (181)
104 2p5s_A RAS and EF-hand domain 99.8 7.2E-19 2.5E-23 161.3 9.5 163 83-283 26-195 (199)
105 2hjg_A GTP-binding protein ENG 99.8 6.9E-19 2.4E-23 181.2 10.5 154 85-284 3-164 (436)
106 3cph_A RAS-related protein SEC 99.8 8.7E-19 3E-23 162.1 10.1 157 83-283 18-180 (213)
107 3a1s_A Iron(II) transport prot 99.8 4.7E-19 1.6E-23 169.5 8.5 154 84-283 4-165 (258)
108 3dz8_A RAS-related protein RAB 99.8 7.8E-19 2.7E-23 159.9 9.6 160 83-283 21-184 (191)
109 2f7s_A C25KG, RAS-related prot 99.8 6.4E-19 2.2E-23 163.8 9.0 158 83-283 23-197 (217)
110 2gf0_A GTP-binding protein DI- 99.8 3.1E-18 1.1E-22 156.5 13.5 161 81-284 4-170 (199)
111 2a5j_A RAS-related protein RAB 99.8 1E-18 3.4E-23 159.1 9.8 160 83-283 19-182 (191)
112 2ce2_X GTPase HRAS; signaling 99.8 4.1E-18 1.4E-22 150.2 13.5 156 84-283 2-163 (166)
113 2oil_A CATX-8, RAS-related pro 99.8 8E-19 2.7E-23 159.9 9.1 159 83-282 23-185 (193)
114 2atx_A Small GTP binding prote 99.8 4E-18 1.4E-22 155.4 13.7 160 84-283 17-191 (194)
115 1f6b_A SAR1; gtpases, N-termin 99.8 2.9E-18 9.8E-23 157.3 12.7 159 82-283 22-197 (198)
116 2xtp_A GTPase IMAP family memb 99.8 2.7E-18 9.3E-23 164.4 13.0 166 82-284 19-207 (260)
117 2bov_A RAla, RAS-related prote 99.8 3.9E-18 1.3E-22 156.7 13.5 158 82-283 11-175 (206)
118 2b6h_A ADP-ribosylation factor 99.8 3.2E-18 1.1E-22 156.2 12.7 158 83-283 27-189 (192)
119 2o52_A RAS-related protein RAB 99.8 9.3E-19 3.2E-23 160.8 9.1 158 83-283 23-186 (200)
120 2fn4_A P23, RAS-related protei 99.8 1.3E-18 4.3E-23 156.3 9.6 157 83-283 7-170 (181)
121 3con_A GTPase NRAS; structural 99.8 3.8E-18 1.3E-22 154.9 12.8 156 83-283 19-181 (190)
122 3bwd_D RAC-like GTP-binding pr 99.8 1.3E-18 4.3E-23 156.6 9.6 163 83-284 6-180 (182)
123 3reg_A RHO-like small GTPase; 99.8 1.6E-18 5.5E-23 158.1 10.3 163 81-283 19-186 (194)
124 1x3s_A RAS-related protein RAB 99.8 1.7E-18 5.7E-23 157.6 10.4 159 84-284 14-177 (195)
125 3gee_A MNME, tRNA modification 99.8 1.4E-18 4.8E-23 179.7 11.1 156 84-284 232-397 (476)
126 4djt_A GTP-binding nuclear pro 99.8 6E-19 2.1E-23 164.0 7.3 161 80-283 6-173 (218)
127 2j1l_A RHO-related GTP-binding 99.8 7.8E-18 2.7E-22 156.3 14.8 161 83-283 32-207 (214)
128 1moz_A ARL1, ADP-ribosylation 99.8 1.8E-18 6.3E-23 155.8 10.1 158 83-283 16-178 (183)
129 2fv8_A H6, RHO-related GTP-bin 99.8 5.2E-18 1.8E-22 156.6 13.3 160 84-283 24-198 (207)
130 3oes_A GTPase rhebl1; small GT 99.7 2.1E-18 7.1E-23 158.4 9.5 158 83-283 22-185 (201)
131 3t5d_A Septin-7; GTP-binding p 99.7 8.6E-18 3E-22 162.3 14.3 168 83-284 6-203 (274)
132 3cpj_B GTP-binding protein YPT 99.7 1.7E-18 5.7E-23 161.9 8.7 159 83-284 11-175 (223)
133 2x77_A ADP-ribosylation factor 99.7 1.6E-18 5.5E-23 157.3 8.2 158 83-283 20-182 (189)
134 2j0v_A RAC-like GTP-binding pr 99.7 2.8E-18 9.7E-23 158.7 9.9 164 83-284 7-179 (212)
135 2yc2_C IFT27, small RAB-relate 99.7 3.1E-18 1.1E-22 157.5 9.9 158 84-282 19-189 (208)
136 2gj8_A MNME, tRNA modification 99.7 1.6E-18 5.5E-23 155.4 7.7 152 84-284 3-165 (172)
137 2wjg_A FEOB, ferrous iron tran 99.7 2.1E-18 7.1E-23 156.3 8.4 155 84-284 6-168 (188)
138 3r7w_A Gtpase1, GTP-binding pr 99.7 4.1E-17 1.4E-21 160.1 18.2 148 85-250 3-165 (307)
139 3q85_A GTP-binding protein REM 99.7 4.5E-18 1.5E-22 151.1 10.3 156 85-283 2-165 (169)
140 1mky_A Probable GTP-binding pr 99.7 9E-18 3.1E-22 173.0 14.1 149 84-252 179-340 (439)
141 1m7b_A RND3/RHOE small GTP-bin 99.7 2E-17 6.7E-22 149.6 14.2 161 83-282 5-180 (184)
142 3b1v_A Ferrous iron uptake tra 99.7 1.7E-18 6E-23 166.6 7.5 153 85-284 3-163 (272)
143 3ihw_A Centg3; RAS, centaurin, 99.7 1.2E-17 4.1E-22 151.3 11.9 154 82-282 17-177 (184)
144 4dcu_A GTP-binding protein ENG 99.7 6.5E-18 2.2E-22 174.9 11.3 156 83-284 21-184 (456)
145 2q3h_A RAS homolog gene family 99.7 3.3E-17 1.1E-21 150.1 14.3 161 83-283 18-193 (201)
146 3l0i_B RAS-related protein RAB 99.7 1.6E-19 5.4E-24 165.7 -1.9 159 83-284 31-195 (199)
147 4dkx_A RAS-related protein RAB 99.7 1.7E-17 5.7E-22 154.3 11.8 158 84-284 12-175 (216)
148 3o47_A ADP-ribosylation factor 99.7 8.1E-18 2.8E-22 166.7 10.2 157 84-283 164-325 (329)
149 1xzp_A Probable tRNA modificat 99.7 1.3E-17 4.5E-22 172.5 11.9 152 85-283 243-403 (482)
150 3q3j_B RHO-related GTP-binding 99.7 1.8E-17 6.2E-22 153.9 11.7 163 82-283 24-201 (214)
151 3lxw_A GTPase IMAP family memb 99.7 5.7E-17 1.9E-21 154.1 15.0 168 83-284 19-207 (247)
152 1gwn_A RHO-related GTP-binding 99.7 5.3E-17 1.8E-21 149.8 14.3 161 83-282 26-201 (205)
153 3gj0_A GTP-binding nuclear pro 99.7 2.8E-18 9.5E-23 160.0 5.2 159 82-283 12-173 (221)
154 3cbq_A GTP-binding protein REM 99.7 2.3E-17 7.7E-22 151.0 10.8 160 82-284 20-187 (195)
155 2cxx_A Probable GTP-binding pr 99.7 6.5E-17 2.2E-21 146.4 13.6 153 86-283 2-182 (190)
156 3geh_A MNME, tRNA modification 99.7 1.3E-17 4.3E-22 171.9 9.1 153 84-284 223-383 (462)
157 3c5c_A RAS-like protein 12; GD 99.7 4.1E-17 1.4E-21 148.1 10.8 158 82-282 18-183 (187)
158 3th5_A RAS-related C3 botulinu 99.5 1.1E-18 3.9E-23 160.5 0.0 159 83-281 28-201 (204)
159 2iwr_A Centaurin gamma 1; ANK 99.7 5.3E-17 1.8E-21 145.6 10.6 153 83-282 5-166 (178)
160 2atv_A RERG, RAS-like estrogen 99.7 7.2E-17 2.5E-21 147.4 10.9 157 83-282 26-188 (196)
161 3lvq_E ARF-GAP with SH3 domain 99.7 1.6E-16 5.5E-21 166.4 14.0 159 83-284 320-483 (497)
162 2zej_A Dardarin, leucine-rich 99.7 1.4E-16 4.8E-21 144.1 10.9 167 85-284 2-177 (184)
163 2wkq_A NPH1-1, RAS-related C3 99.7 3E-16 1E-20 155.2 13.6 162 82-283 152-328 (332)
164 3lxx_A GTPase IMAP family memb 99.7 7.7E-16 2.6E-20 145.4 15.7 167 83-283 27-212 (239)
165 2qtf_A Protein HFLX, GTP-bindi 99.7 5.5E-16 1.9E-20 155.2 14.3 160 85-284 179-353 (364)
166 1lnz_A SPO0B-associated GTP-bi 99.6 9.5E-17 3.2E-21 159.1 6.8 155 85-284 158-329 (342)
167 1h65_A Chloroplast outer envel 99.6 5.1E-15 1.8E-19 142.5 18.6 183 82-284 36-244 (270)
168 2e87_A Hypothetical protein PH 99.6 2.8E-15 9.4E-20 150.2 16.5 156 83-283 165-334 (357)
169 2g3y_A GTP-binding protein GEM 99.6 1.6E-15 5.6E-20 140.4 13.3 161 83-283 35-201 (211)
170 1nrj_B SR-beta, signal recogni 99.6 6.8E-16 2.3E-20 143.3 10.3 146 82-253 9-170 (218)
171 1pui_A ENGB, probable GTP-bind 99.6 4.1E-15 1.4E-19 137.0 14.6 161 83-283 24-197 (210)
172 3def_A T7I23.11 protein; chlor 99.6 3.2E-15 1.1E-19 143.3 12.6 119 82-215 33-165 (262)
173 2j69_A Bacterial dynamin-like 99.6 3.2E-15 1.1E-19 161.8 13.8 68 148-216 174-245 (695)
174 2cjw_A GTP-binding protein GEM 99.6 6E-15 2.1E-19 134.4 11.8 161 83-283 4-170 (192)
175 3dpu_A RAB family protein; roc 99.6 1.1E-15 3.9E-20 161.3 7.2 146 82-252 38-193 (535)
176 3r7w_B Gtpase2, GTP-binding pr 99.6 7.4E-15 2.5E-19 143.2 12.0 147 87-251 1-159 (331)
177 2f9l_A RAB11B, member RAS onco 99.6 6.2E-15 2.1E-19 134.9 10.6 155 85-282 5-165 (199)
178 2aka_B Dynamin-1; fusion prote 99.6 2E-15 6.8E-20 147.3 7.7 99 147-252 124-238 (299)
179 2qag_A Septin-2, protein NEDD5 99.6 5.4E-15 1.8E-19 148.1 10.1 175 81-285 33-237 (361)
180 1jwy_B Dynamin A GTPase domain 99.6 2.7E-15 9.4E-20 147.5 7.7 71 146-217 129-214 (315)
181 3p32_A Probable GTPase RV1496/ 99.6 1.3E-14 4.4E-19 145.2 11.8 176 81-283 75-282 (355)
182 2p67_A LAO/AO transport system 99.5 3.8E-14 1.3E-18 140.9 12.4 174 82-282 53-258 (341)
183 1wxq_A GTP-binding protein; st 99.5 2.2E-14 7.5E-19 145.1 10.7 83 86-184 1-114 (397)
184 2ged_A SR-beta, signal recogni 99.5 3.4E-14 1.2E-18 128.9 9.2 113 83-216 46-171 (193)
185 3c5h_A Glucocorticoid receptor 99.5 1.2E-14 4.1E-19 138.6 5.9 84 171-282 162-252 (255)
186 1oix_A RAS-related protein RAB 99.5 4.3E-14 1.5E-18 128.5 9.1 156 84-282 28-189 (191)
187 2www_A Methylmalonic aciduria 99.5 1E-13 3.5E-18 138.1 11.4 173 83-282 72-276 (349)
188 2qpt_A EH domain-containing pr 99.4 3.4E-13 1.1E-17 142.1 12.0 136 84-220 64-237 (550)
189 2x2e_A Dynamin-1; nitration, h 99.4 5E-14 1.7E-18 140.8 4.4 165 83-253 29-244 (353)
190 1udx_A The GTP-binding protein 99.4 7.7E-13 2.6E-17 134.1 12.9 154 86-284 158-324 (416)
191 2wsm_A Hydrogenase expression/ 99.4 1.3E-13 4.4E-18 128.1 4.2 167 83-284 28-213 (221)
192 3zvr_A Dynamin-1; hydrolase, D 99.4 3.1E-13 1.1E-17 145.5 6.2 165 83-253 49-264 (772)
193 3t34_A Dynamin-related protein 99.4 6.4E-13 2.2E-17 133.2 8.1 99 146-253 134-247 (360)
194 1yrb_A ATP(GTP)binding protein 99.4 9.1E-12 3.1E-16 118.8 15.5 112 148-283 109-255 (262)
195 2qag_C Septin-7; cell cycle, c 99.3 1.6E-11 5.4E-16 124.5 12.7 153 83-252 29-212 (418)
196 1jal_A YCHF protein; nucleotid 99.3 2.3E-11 7.9E-16 120.7 13.2 82 86-183 3-108 (363)
197 4a9a_A Ribosome-interacting GT 99.2 6.1E-12 2.1E-16 125.5 6.9 115 82-214 69-195 (376)
198 2qm8_A GTPase/ATPase; G protei 99.2 3E-11 1E-15 119.6 11.4 162 83-252 53-246 (337)
199 1cip_A Protein (guanine nucleo 99.2 5.8E-11 2E-15 117.9 10.5 130 134-282 179-341 (353)
200 2qnr_A Septin-2, protein NEDD5 99.2 9.9E-11 3.4E-15 114.1 11.5 154 83-251 16-199 (301)
201 2dby_A GTP-binding protein; GD 99.2 1.1E-10 3.8E-15 116.4 11.5 82 86-183 2-111 (368)
202 1zcb_A G alpha I/13; GTP-bindi 99.2 2.5E-10 8.5E-15 113.8 14.0 75 139-214 192-281 (362)
203 1xe1_A Hypothetical protein PF 99.1 5.4E-10 1.8E-14 90.2 12.2 81 291-377 32-112 (116)
204 2j37_W Signal recognition part 99.0 3.3E-10 1.1E-14 117.3 9.1 127 84-215 100-254 (504)
205 2hf9_A Probable hydrogenase ni 99.0 3.6E-10 1.2E-14 105.0 7.3 167 82-282 35-221 (226)
206 2qag_B Septin-6, protein NEDD5 99.0 1.9E-09 6.4E-14 108.9 12.1 147 82-248 39-217 (427)
207 4fid_A G protein alpha subunit 99.0 9.9E-09 3.4E-13 100.8 16.5 81 134-215 147-242 (340)
208 3sop_A Neuronal-specific septi 98.9 1.3E-08 4.5E-13 97.3 15.3 141 85-236 2-174 (270)
209 3ohm_A Guanine nucleotide-bind 98.9 1.5E-08 5.2E-13 99.1 14.6 118 134-252 153-303 (327)
210 3h2y_A GTPase family protein; 98.8 6.4E-10 2.2E-14 111.4 -0.1 120 85-217 160-289 (368)
211 3ec1_A YQEH GTPase; atnos1, at 98.8 3.5E-10 1.2E-14 113.4 -2.6 118 85-216 162-289 (369)
212 1tq4_A IIGP1, interferon-induc 98.7 1.4E-07 4.9E-12 95.2 15.6 165 84-285 68-253 (413)
213 2ohf_A Protein OLA1, GTP-bindi 98.7 1.1E-08 3.6E-13 102.5 6.4 85 83-183 20-128 (396)
214 2v3c_C SRP54, signal recogniti 98.6 3.4E-08 1.2E-12 100.6 7.6 128 85-215 99-252 (432)
215 1u0l_A Probable GTPase ENGC; p 98.6 7.5E-08 2.6E-12 93.7 7.1 93 149-252 64-158 (301)
216 3dm5_A SRP54, signal recogniti 98.5 9.1E-07 3.1E-11 89.8 13.6 128 84-216 99-254 (443)
217 1azs_C GS-alpha; complex (lyas 98.5 8E-07 2.7E-11 89.3 12.1 79 135-214 204-297 (402)
218 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 2.7E-07 9.2E-12 92.5 8.3 85 83-183 18-127 (392)
219 2xtz_A Guanine nucleotide-bind 98.4 5.9E-07 2E-11 89.0 9.5 67 147-214 182-263 (354)
220 1j8m_F SRP54, signal recogniti 98.3 9.5E-07 3.2E-11 85.5 8.1 126 85-215 98-253 (297)
221 1puj_A YLQF, conserved hypothe 98.3 8.8E-07 3E-11 85.1 7.2 88 152-252 3-91 (282)
222 3kl4_A SRP54, signal recogniti 98.3 1.5E-06 5.1E-11 88.1 9.1 125 85-215 97-252 (433)
223 1d1n_A Initiation factor 2; be 98.2 1.6E-06 5.5E-11 68.0 6.3 81 295-377 8-89 (99)
224 2xxa_A Signal recognition part 98.2 2.5E-06 8.5E-11 86.9 9.5 126 84-215 99-254 (433)
225 1f5n_A Interferon-induced guan 98.2 5.5E-07 1.9E-11 94.7 4.0 103 82-197 35-146 (592)
226 2crv_A IF-2MT, translation ini 98.2 7E-06 2.4E-10 66.6 8.6 82 295-378 12-98 (120)
227 2yv5_A YJEQ protein; hydrolase 98.2 6.3E-06 2.2E-10 80.0 9.9 87 158-252 66-154 (302)
228 3ec1_A YQEH GTPase; atnos1, at 98.1 1.9E-06 6.6E-11 86.1 5.7 109 150-282 51-159 (369)
229 1puj_A YLQF, conserved hypothe 98.1 2.2E-06 7.4E-11 82.4 5.6 58 83-158 118-175 (282)
230 4dzz_A Plasmid partitioning pr 98.1 3.2E-05 1.1E-09 70.0 12.6 121 87-215 3-144 (206)
231 3h2y_A GTPase family protein; 98.0 3.5E-06 1.2E-10 84.1 5.6 101 157-282 55-157 (368)
232 2yhs_A FTSY, cell division pro 98.0 1.3E-05 4.3E-10 82.2 9.1 124 86-215 294-452 (503)
233 3l82_B F-box only protein 4; T 98.0 8.3E-06 2.8E-10 73.7 6.1 103 157-284 111-222 (227)
234 3cnl_A YLQF, putative uncharac 97.9 3.3E-06 1.1E-10 80.2 3.2 94 155-282 4-98 (262)
235 3e70_C DPA, signal recognition 97.9 1.9E-05 6.6E-10 77.3 8.3 128 84-215 128-282 (328)
236 1zu4_A FTSY; GTPase, signal re 97.9 2.9E-05 9.8E-10 75.9 8.5 126 85-215 105-268 (320)
237 1zo1_I IF2, translation initia 97.8 6E-05 2E-09 77.9 10.8 107 269-378 385-492 (501)
238 3cnl_A YLQF, putative uncharac 97.8 9.6E-06 3.3E-10 77.0 3.6 57 86-160 100-156 (262)
239 3szr_A Interferon-induced GTP- 97.7 5E-05 1.7E-09 80.8 8.1 69 147-216 146-229 (608)
240 1vma_A Cell division protein F 97.7 5.7E-05 2E-09 73.2 7.8 125 85-215 104-263 (306)
241 1rj9_A FTSY, signal recognitio 97.7 0.00011 3.6E-09 71.3 9.5 127 85-215 102-261 (304)
242 1t9h_A YLOQ, probable GTPase E 97.6 6.6E-05 2.2E-09 72.7 6.8 78 168-252 83-162 (307)
243 2ffh_A Protein (FFH); SRP54, s 97.6 0.00012 4E-09 74.1 8.8 125 85-215 98-251 (425)
244 3l2o_B F-box only protein 4; s 97.6 6.4E-05 2.2E-09 71.2 6.1 105 155-284 194-307 (312)
245 2px0_A Flagellar biosynthesis 97.6 6.7E-05 2.3E-09 72.4 6.5 126 85-215 105-253 (296)
246 3izy_P Translation initiation 97.5 0.00025 8.7E-09 73.8 10.1 107 269-377 424-534 (537)
247 3kjh_A CO dehydrogenase/acetyl 97.5 8.5E-05 2.9E-09 69.3 6.0 66 145-212 129-194 (254)
248 2ph1_A Nucleotide-binding prot 97.4 0.0017 5.9E-08 61.2 13.5 68 146-213 127-194 (262)
249 3q5d_A Atlastin-1; G protein, 97.4 0.00043 1.5E-08 70.3 8.9 28 82-109 64-91 (447)
250 3end_A Light-independent proto 97.4 0.0022 7.4E-08 61.9 13.5 67 146-213 155-225 (307)
251 3b9q_A Chloroplast SRP recepto 97.3 0.0006 2.1E-08 65.9 8.9 125 86-215 101-260 (302)
252 1ls1_A Signal recognition part 97.3 0.00031 1.1E-08 67.7 6.9 127 85-215 98-251 (295)
253 3cwq_A Para family chromosome 97.3 0.00049 1.7E-08 62.7 7.9 121 87-215 2-134 (209)
254 1g7s_A Translation initiation 97.3 0.0012 4E-08 69.8 11.2 83 293-378 463-548 (594)
255 3la6_A Tyrosine-protein kinase 97.2 0.0011 3.8E-08 63.5 9.9 68 147-215 201-268 (286)
256 2og2_A Putative signal recogni 97.2 0.0009 3.1E-08 66.1 9.0 125 86-215 158-317 (359)
257 1hyq_A MIND, cell division inh 97.2 0.0014 4.9E-08 61.6 9.7 68 147-216 110-177 (263)
258 3bfv_A CAPA1, CAPB2, membrane 97.1 0.0014 4.9E-08 62.2 9.1 68 147-215 191-258 (271)
259 3cio_A ETK, tyrosine-protein k 97.1 0.0022 7.4E-08 61.9 10.4 67 147-214 213-279 (299)
260 2rcn_A Probable GTPase ENGC; Y 97.0 0.0031 1.1E-07 62.1 10.1 76 168-252 127-204 (358)
261 1g3q_A MIND ATPase, cell divis 96.9 0.0025 8.4E-08 58.8 8.8 67 147-215 111-177 (237)
262 3q9l_A Septum site-determining 96.8 0.0036 1.2E-07 58.5 9.3 65 147-213 113-185 (260)
263 3k9g_A PF-32 protein; ssgcid, 96.8 0.0053 1.8E-07 57.8 9.8 66 146-214 143-210 (267)
264 2oze_A ORF delta'; para, walke 96.7 0.015 5.3E-07 55.5 13.0 67 147-215 154-226 (298)
265 3ea0_A ATPase, para family; al 96.6 0.0032 1.1E-07 58.3 6.6 67 147-215 118-186 (245)
266 1wcv_1 SOJ, segregation protei 96.5 0.0096 3.3E-07 55.7 9.6 68 146-215 110-183 (257)
267 1nij_A Hypothetical protein YJ 96.4 0.0036 1.2E-07 60.9 6.3 24 85-108 4-27 (318)
268 2afh_E Nitrogenase iron protei 96.4 0.0067 2.3E-07 57.9 7.9 69 146-214 117-190 (289)
269 1t9h_A YLOQ, probable GTPase E 96.3 0.001 3.5E-08 64.3 1.6 24 85-108 173-196 (307)
270 1cp2_A CP2, nitrogenase iron p 96.3 0.013 4.4E-07 55.1 9.2 68 147-214 115-187 (269)
271 3ug7_A Arsenical pump-driving 96.3 0.12 4E-06 50.8 16.2 43 172-214 237-279 (349)
272 3zq6_A Putative arsenical pump 96.1 0.22 7.6E-06 48.2 16.9 42 173-214 223-264 (324)
273 2rcn_A Probable GTPase ENGC; Y 96.0 0.0024 8.3E-08 62.9 2.6 23 86-108 216-238 (358)
274 4ido_A Atlastin-1; GTPase, GTP 95.8 0.028 9.5E-07 56.8 9.1 28 82-109 64-91 (457)
275 1bif_A 6-phosphofructo-2-kinas 95.8 0.0057 1.9E-07 62.8 4.1 103 85-202 39-151 (469)
276 2xj4_A MIPZ; replication, cell 95.7 0.0054 1.8E-07 58.5 3.3 34 147-182 103-136 (286)
277 1ihu_A Arsenical pump-driving 95.6 0.044 1.5E-06 57.9 10.4 42 173-214 199-240 (589)
278 1ye8_A Protein THEP1, hypothet 95.6 0.007 2.4E-07 53.5 3.4 24 86-109 1-24 (178)
279 1kgd_A CASK, peripheral plasma 95.3 0.009 3.1E-07 52.7 3.1 23 86-108 6-28 (180)
280 1lvg_A Guanylate kinase, GMP k 95.3 0.0091 3.1E-07 53.6 3.1 24 86-109 5-28 (198)
281 3c8u_A Fructokinase; YP_612366 95.0 0.017 5.9E-07 52.1 4.2 29 83-111 20-48 (208)
282 1znw_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 53.0 3.2 24 86-109 21-44 (207)
283 3a00_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 51.9 3.2 23 87-109 3-25 (186)
284 3tr0_A Guanylate kinase, GMP k 94.9 0.013 4.6E-07 52.4 3.1 23 86-108 8-30 (205)
285 1z6g_A Guanylate kinase; struc 94.7 0.015 5.2E-07 53.0 3.2 24 86-109 24-47 (218)
286 1s96_A Guanylate kinase, GMP k 94.6 0.017 5.9E-07 52.8 3.1 24 86-109 17-40 (219)
287 3asz_A Uridine kinase; cytidin 94.6 0.023 8E-07 51.1 3.9 26 84-109 5-30 (211)
288 3qxc_A Dethiobiotin synthetase 94.5 0.29 1E-05 45.2 11.3 67 146-215 130-203 (242)
289 1zp6_A Hypothetical protein AT 94.5 0.024 8.3E-07 50.0 3.8 24 85-108 9-32 (191)
290 3ney_A 55 kDa erythrocyte memb 94.5 0.021 7.1E-07 51.2 3.3 23 86-108 20-42 (197)
291 1np6_A Molybdopterin-guanine d 94.5 0.031 1.1E-06 49.0 4.3 28 85-112 6-33 (174)
292 1ihu_A Arsenical pump-driving 94.4 0.19 6.5E-06 52.9 11.2 44 171-214 489-532 (589)
293 1htw_A HI0065; nucleotide-bind 94.4 0.022 7.4E-07 49.2 3.2 26 84-109 32-57 (158)
294 1xjc_A MOBB protein homolog; s 94.3 0.035 1.2E-06 48.5 4.2 29 85-113 4-32 (169)
295 4gp7_A Metallophosphoesterase; 94.2 0.022 7.7E-07 49.6 2.8 20 87-106 11-30 (171)
296 2f1r_A Molybdopterin-guanine d 94.2 0.026 8.8E-07 49.4 3.1 25 86-110 3-27 (171)
297 3tif_A Uncharacterized ABC tra 94.2 0.019 6.4E-07 53.2 2.3 23 86-108 32-54 (235)
298 2j41_A Guanylate kinase; GMP, 94.2 0.031 1.1E-06 49.9 3.8 24 86-109 7-30 (207)
299 2pcj_A ABC transporter, lipopr 94.1 0.02 6.8E-07 52.5 2.5 22 87-108 32-53 (224)
300 3io5_A Recombination and repai 94.1 0.5 1.7E-05 45.5 12.1 23 87-109 30-52 (333)
301 3tau_A Guanylate kinase, GMP k 94.1 0.033 1.1E-06 50.3 3.8 25 85-109 8-32 (208)
302 2woo_A ATPase GET3; tail-ancho 94.0 0.79 2.7E-05 44.3 13.9 41 173-213 222-262 (329)
303 1knq_A Gluconate kinase; ALFA/ 94.0 0.038 1.3E-06 48.0 3.9 25 84-108 7-31 (175)
304 4eun_A Thermoresistant glucoki 94.0 0.034 1.2E-06 49.7 3.6 26 84-109 28-53 (200)
305 2onk_A Molybdate/tungstate ABC 93.9 0.026 8.8E-07 52.4 2.8 23 86-108 25-47 (240)
306 2v9p_A Replication protein E1; 93.9 0.032 1.1E-06 53.7 3.5 26 84-109 125-150 (305)
307 1kag_A SKI, shikimate kinase I 93.9 0.032 1.1E-06 48.4 3.1 23 86-108 5-27 (173)
308 3iqw_A Tail-anchored protein t 93.8 0.52 1.8E-05 45.8 12.1 41 173-213 223-263 (334)
309 2bdt_A BH3686; alpha-beta prot 93.8 0.033 1.1E-06 49.2 3.2 21 87-107 4-24 (189)
310 2eyu_A Twitching motility prot 93.7 0.035 1.2E-06 52.1 3.4 27 84-110 24-50 (261)
311 2cbz_A Multidrug resistance-as 93.7 0.027 9.3E-07 52.1 2.6 23 86-108 32-54 (237)
312 3b85_A Phosphate starvation-in 93.7 0.028 9.5E-07 50.9 2.5 22 87-108 24-45 (208)
313 2i3b_A HCR-ntpase, human cance 93.7 0.044 1.5E-06 48.7 3.8 27 87-113 3-29 (189)
314 2pze_A Cystic fibrosis transme 93.7 0.029 9.7E-07 51.7 2.5 22 87-108 36-57 (229)
315 1g6h_A High-affinity branched- 93.6 0.026 9E-07 52.9 2.3 22 87-108 35-56 (257)
316 2d2e_A SUFC protein; ABC-ATPas 93.6 0.032 1.1E-06 52.1 2.8 21 87-107 31-51 (250)
317 1sgw_A Putative ABC transporte 93.6 0.027 9.4E-07 51.2 2.3 22 87-108 37-58 (214)
318 3gfo_A Cobalt import ATP-bindi 93.6 0.027 9.1E-07 53.4 2.3 22 87-108 36-57 (275)
319 4g1u_C Hemin import ATP-bindin 93.6 0.026 8.8E-07 53.3 2.2 23 86-108 38-60 (266)
320 1ex7_A Guanylate kinase; subst 93.6 0.039 1.3E-06 49.0 3.3 21 88-108 4-24 (186)
321 3kb2_A SPBC2 prophage-derived 93.6 0.044 1.5E-06 47.2 3.6 23 86-108 2-24 (173)
322 1mv5_A LMRA, multidrug resista 93.6 0.029 1E-06 52.1 2.5 23 86-108 29-51 (243)
323 1b0u_A Histidine permease; ABC 93.6 0.027 9.3E-07 53.0 2.3 23 86-108 33-55 (262)
324 2b8t_A Thymidine kinase; deoxy 93.6 0.21 7.3E-06 45.5 8.2 29 86-114 13-41 (223)
325 2if2_A Dephospho-COA kinase; a 93.6 0.044 1.5E-06 49.0 3.6 22 86-107 2-23 (204)
326 3lw7_A Adenylate kinase relate 93.5 0.039 1.3E-06 47.5 3.1 20 86-105 2-21 (179)
327 2qor_A Guanylate kinase; phosp 93.5 0.04 1.4E-06 49.4 3.3 24 86-109 13-36 (204)
328 2ff7_A Alpha-hemolysin translo 93.5 0.031 1.1E-06 52.1 2.6 22 87-108 37-58 (247)
329 3uie_A Adenylyl-sulfate kinase 93.5 0.066 2.2E-06 47.8 4.7 27 84-110 24-50 (200)
330 2yv5_A YJEQ protein; hydrolase 93.5 0.038 1.3E-06 53.1 3.2 21 86-106 166-186 (302)
331 3hr8_A Protein RECA; alpha and 93.5 0.36 1.2E-05 47.3 10.3 25 86-110 62-86 (356)
332 1ji0_A ABC transporter; ATP bi 93.5 0.03 1E-06 51.9 2.3 22 87-108 34-55 (240)
333 3aez_A Pantothenate kinase; tr 93.4 0.048 1.7E-06 52.6 3.9 28 83-110 88-115 (312)
334 2ghi_A Transport protein; mult 93.4 0.033 1.1E-06 52.3 2.6 23 86-108 47-69 (260)
335 2zu0_C Probable ATP-dependent 93.3 0.04 1.4E-06 51.9 3.1 23 86-108 47-69 (267)
336 1cke_A CK, MSSA, protein (cyti 93.3 0.047 1.6E-06 49.6 3.4 23 86-108 6-28 (227)
337 2olj_A Amino acid ABC transpor 93.3 0.032 1.1E-06 52.5 2.3 23 86-108 51-73 (263)
338 3zvl_A Bifunctional polynucleo 93.3 0.17 6E-06 50.8 7.9 23 85-107 258-280 (416)
339 1nks_A Adenylate kinase; therm 93.3 0.066 2.3E-06 47.0 4.3 25 86-110 2-26 (194)
340 2qi9_C Vitamin B12 import ATP- 93.3 0.036 1.2E-06 51.7 2.5 22 87-108 28-49 (249)
341 1vpl_A ABC transporter, ATP-bi 93.3 0.033 1.1E-06 52.2 2.3 22 87-108 43-64 (256)
342 3tlx_A Adenylate kinase 2; str 93.2 0.09 3.1E-06 48.6 5.3 26 83-108 27-52 (243)
343 2bbw_A Adenylate kinase 4, AK4 93.2 0.046 1.6E-06 50.6 3.2 23 85-107 27-49 (246)
344 3t61_A Gluconokinase; PSI-biol 93.2 0.05 1.7E-06 48.6 3.4 24 86-109 19-42 (202)
345 3bos_A Putative DNA replicatio 93.2 0.13 4.4E-06 46.7 6.2 28 84-111 51-78 (242)
346 2zr9_A Protein RECA, recombina 93.1 0.21 7.3E-06 48.9 8.0 25 86-110 62-86 (349)
347 2ixe_A Antigen peptide transpo 93.1 0.038 1.3E-06 52.2 2.6 23 86-108 46-68 (271)
348 2jeo_A Uridine-cytidine kinase 93.1 0.06 2.1E-06 49.8 3.9 25 85-109 25-49 (245)
349 3of5_A Dethiobiotin synthetase 93.1 0.77 2.6E-05 41.9 11.3 67 146-214 109-182 (228)
350 1u0l_A Probable GTPase ENGC; p 93.1 0.036 1.2E-06 53.2 2.4 23 86-108 170-192 (301)
351 1rz3_A Hypothetical protein rb 93.1 0.13 4.5E-06 45.9 6.0 27 84-110 21-47 (201)
352 2yz2_A Putative ABC transporte 93.1 0.037 1.2E-06 52.2 2.3 23 86-108 34-56 (266)
353 4a1f_A DNAB helicase, replicat 93.1 0.7 2.4E-05 44.9 11.5 25 87-111 48-72 (338)
354 2ihy_A ABC transporter, ATP-bi 93.1 0.039 1.3E-06 52.4 2.5 22 87-108 49-70 (279)
355 2jaq_A Deoxyguanosine kinase; 93.1 0.06 2.1E-06 47.8 3.7 23 87-109 2-24 (205)
356 2chg_A Replication factor C sm 93.1 0.5 1.7E-05 41.8 10.0 23 87-109 40-62 (226)
357 2nq2_C Hypothetical ABC transp 93.1 0.038 1.3E-06 51.7 2.4 22 87-108 33-54 (253)
358 2yvu_A Probable adenylyl-sulfa 93.0 0.086 2.9E-06 46.3 4.6 28 84-111 12-39 (186)
359 3io3_A DEHA2D07832P; chaperone 93.0 0.52 1.8E-05 46.1 10.6 42 173-214 232-273 (348)
360 4a74_A DNA repair and recombin 93.0 0.053 1.8E-06 49.2 3.3 23 86-108 26-48 (231)
361 3vaa_A Shikimate kinase, SK; s 93.0 0.067 2.3E-06 47.7 3.9 24 85-108 25-48 (199)
362 2qt1_A Nicotinamide riboside k 93.0 0.063 2.2E-06 48.1 3.7 25 84-108 20-44 (207)
363 3nh6_A ATP-binding cassette SU 93.0 0.033 1.1E-06 53.6 1.9 24 85-108 80-103 (306)
364 3lnc_A Guanylate kinase, GMP k 93.0 0.032 1.1E-06 51.1 1.7 23 86-108 28-51 (231)
365 3fb4_A Adenylate kinase; psych 92.9 0.061 2.1E-06 48.5 3.5 23 86-108 1-23 (216)
366 3fgn_A Dethiobiotin synthetase 92.9 1.3 4.6E-05 40.9 12.8 126 85-212 26-197 (251)
367 1jjv_A Dephospho-COA kinase; P 92.9 0.055 1.9E-06 48.4 3.2 22 86-107 3-24 (206)
368 1kht_A Adenylate kinase; phosp 92.9 0.073 2.5E-06 46.7 3.9 25 86-110 4-28 (192)
369 1ly1_A Polynucleotide kinase; 92.8 0.066 2.2E-06 46.5 3.5 22 86-107 3-24 (181)
370 2plr_A DTMP kinase, probable t 92.8 0.082 2.8E-06 47.2 4.2 26 85-110 4-29 (213)
371 3dl0_A Adenylate kinase; phosp 92.7 0.067 2.3E-06 48.3 3.5 23 86-108 1-23 (216)
372 1gtv_A TMK, thymidylate kinase 92.7 0.044 1.5E-06 49.3 2.2 24 87-110 2-25 (214)
373 3trf_A Shikimate kinase, SK; a 92.7 0.076 2.6E-06 46.5 3.7 24 85-108 5-28 (185)
374 2rhm_A Putative kinase; P-loop 92.7 0.09 3.1E-06 46.2 4.2 24 85-108 5-28 (193)
375 1lw7_A Transcriptional regulat 92.7 0.056 1.9E-06 53.4 3.1 24 85-108 170-193 (365)
376 1nn5_A Similar to deoxythymidy 92.7 0.1 3.5E-06 46.8 4.6 27 85-111 9-35 (215)
377 1odf_A YGR205W, hypothetical 3 92.6 0.077 2.6E-06 50.6 4.0 30 82-111 28-57 (290)
378 3ec2_A DNA replication protein 92.6 0.075 2.6E-06 46.4 3.6 26 85-110 38-63 (180)
379 2ehv_A Hypothetical protein PH 92.6 0.059 2E-06 49.6 3.0 22 86-107 31-52 (251)
380 2bbs_A Cystic fibrosis transme 92.6 0.053 1.8E-06 51.7 2.7 23 86-108 65-87 (290)
381 3jvv_A Twitching mobility prot 92.6 0.065 2.2E-06 52.7 3.4 26 86-111 124-149 (356)
382 3cm0_A Adenylate kinase; ATP-b 92.6 0.084 2.9E-06 46.2 3.9 24 85-108 4-27 (186)
383 2pjz_A Hypothetical protein ST 92.5 0.052 1.8E-06 51.0 2.5 22 87-108 32-53 (263)
384 3tqc_A Pantothenate kinase; bi 92.5 0.082 2.8E-06 51.2 4.0 27 84-110 91-117 (321)
385 3tui_C Methionine import ATP-b 92.5 0.056 1.9E-06 53.2 2.8 23 86-108 55-77 (366)
386 1qhx_A CPT, protein (chloramph 92.5 0.09 3.1E-06 45.6 3.9 23 86-108 4-26 (178)
387 2gza_A Type IV secretion syste 92.5 0.061 2.1E-06 53.1 3.1 23 86-108 176-198 (361)
388 1xp8_A RECA protein, recombina 92.4 0.52 1.8E-05 46.4 9.7 23 87-109 76-98 (366)
389 1uf9_A TT1252 protein; P-loop, 92.4 0.094 3.2E-06 46.5 4.0 24 84-107 7-30 (203)
390 2wwf_A Thymidilate kinase, put 92.4 0.1 3.6E-06 46.6 4.4 27 85-111 10-36 (212)
391 1sq5_A Pantothenate kinase; P- 92.4 0.087 3E-06 50.7 4.0 27 83-109 78-104 (308)
392 3fvq_A Fe(3+) IONS import ATP- 92.3 0.064 2.2E-06 52.7 3.0 22 87-108 32-53 (359)
393 2pbr_A DTMP kinase, thymidylat 92.3 0.1 3.5E-06 45.8 4.1 24 87-110 2-25 (195)
394 1tev_A UMP-CMP kinase; ploop, 92.3 0.088 3E-06 46.3 3.7 24 85-108 3-26 (196)
395 2kjq_A DNAA-related protein; s 92.3 0.07 2.4E-06 45.4 2.8 27 84-110 35-61 (149)
396 1aky_A Adenylate kinase; ATP:A 92.2 0.096 3.3E-06 47.4 3.9 25 84-108 3-27 (220)
397 1y63_A LMAJ004144AAA protein; 92.2 0.089 3.1E-06 46.2 3.5 24 85-108 10-33 (184)
398 2z0h_A DTMP kinase, thymidylat 92.2 0.11 3.7E-06 45.8 4.1 27 87-113 2-28 (197)
399 2c95_A Adenylate kinase 1; tra 92.2 0.11 3.8E-06 45.7 4.1 24 85-108 9-32 (196)
400 2ewv_A Twitching motility prot 92.1 0.08 2.7E-06 52.5 3.5 28 84-111 135-162 (372)
401 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.058 2E-06 52.5 2.3 22 87-108 173-194 (330)
402 1z47_A CYSA, putative ABC-tran 92.0 0.071 2.4E-06 52.4 2.8 22 87-108 43-64 (355)
403 2yyz_A Sugar ABC transporter, 91.9 0.073 2.5E-06 52.4 2.8 22 87-108 31-52 (359)
404 4e22_A Cytidylate kinase; P-lo 91.9 0.097 3.3E-06 48.7 3.6 23 85-107 27-49 (252)
405 3fkq_A NTRC-like two-domain pr 91.9 0.082 2.8E-06 52.3 3.2 31 83-113 141-172 (373)
406 2v54_A DTMP kinase, thymidylat 91.9 0.097 3.3E-06 46.5 3.4 24 85-108 4-27 (204)
407 2cdn_A Adenylate kinase; phosp 91.9 0.12 4.2E-06 45.9 4.1 25 84-108 19-43 (201)
408 1e4v_A Adenylate kinase; trans 91.9 0.11 3.8E-06 46.8 3.8 22 87-108 2-23 (214)
409 3rlf_A Maltose/maltodextrin im 91.8 0.075 2.6E-06 52.6 2.8 22 87-108 31-52 (381)
410 2it1_A 362AA long hypothetical 91.8 0.077 2.6E-06 52.3 2.8 22 87-108 31-52 (362)
411 1zd8_A GTP:AMP phosphotransfer 91.7 0.11 3.8E-06 47.3 3.7 24 85-108 7-30 (227)
412 1g29_1 MALK, maltose transport 91.7 0.08 2.7E-06 52.4 2.8 22 87-108 31-52 (372)
413 2pt5_A Shikimate kinase, SK; a 91.6 0.096 3.3E-06 45.0 3.0 22 87-108 2-23 (168)
414 1v43_A Sugar-binding transport 91.6 0.083 2.8E-06 52.3 2.8 23 86-108 38-60 (372)
415 1ukz_A Uridylate kinase; trans 91.6 0.13 4.6E-06 45.7 4.0 24 85-108 15-38 (203)
416 1p9r_A General secretion pathw 91.6 0.091 3.1E-06 52.8 3.2 27 83-109 165-191 (418)
417 2oap_1 GSPE-2, type II secreti 91.5 0.071 2.4E-06 55.1 2.4 22 87-108 262-283 (511)
418 2pez_A Bifunctional 3'-phospho 91.5 0.16 5.5E-06 44.2 4.4 25 85-109 5-29 (179)
419 1u94_A RECA protein, recombina 91.5 0.38 1.3E-05 47.2 7.5 25 86-110 64-88 (356)
420 3d31_A Sulfate/molybdate ABC t 91.5 0.07 2.4E-06 52.3 2.2 22 87-108 28-49 (348)
421 3iij_A Coilin-interacting nucl 91.5 0.096 3.3E-06 45.7 2.9 24 85-108 11-34 (180)
422 1via_A Shikimate kinase; struc 91.4 0.1 3.5E-06 45.3 3.0 22 87-108 6-27 (175)
423 3kta_A Chromosome segregation 91.4 0.12 4E-06 45.2 3.3 22 87-108 28-49 (182)
424 1zak_A Adenylate kinase; ATP:A 91.3 0.13 4.4E-06 46.6 3.6 23 86-108 6-28 (222)
425 2bwj_A Adenylate kinase 5; pho 91.3 0.14 4.7E-06 45.2 3.8 23 86-108 13-35 (199)
426 3syl_A Protein CBBX; photosynt 91.3 0.61 2.1E-05 44.2 8.6 31 82-112 64-94 (309)
427 3a4m_A L-seryl-tRNA(SEC) kinas 91.2 0.16 5.6E-06 47.3 4.4 29 85-113 4-32 (260)
428 2grj_A Dephospho-COA kinase; T 91.2 0.13 4.4E-06 45.8 3.5 26 82-107 9-34 (192)
429 1qf9_A UMP/CMP kinase, protein 91.2 0.15 5E-06 44.7 3.9 23 86-108 7-29 (194)
430 1oxx_K GLCV, glucose, ABC tran 91.1 0.07 2.4E-06 52.4 1.7 23 86-108 32-54 (353)
431 3sr0_A Adenylate kinase; phosp 91.1 0.14 4.7E-06 46.2 3.5 23 86-108 1-23 (206)
432 3gd7_A Fusion complex of cysti 91.0 0.11 3.6E-06 51.8 3.0 24 86-109 48-71 (390)
433 3be4_A Adenylate kinase; malar 91.0 0.14 4.8E-06 46.3 3.6 23 86-108 6-28 (217)
434 2w0m_A SSO2452; RECA, SSPF, un 90.9 0.15 5.2E-06 46.0 3.8 25 86-110 24-48 (235)
435 1jbk_A CLPB protein; beta barr 90.9 0.27 9.3E-06 42.5 5.3 27 84-110 42-68 (195)
436 1vht_A Dephospho-COA kinase; s 90.8 0.15 5E-06 46.1 3.5 22 86-107 5-26 (218)
437 1m7g_A Adenylylsulfate kinase; 90.8 0.22 7.5E-06 44.7 4.6 26 85-110 25-50 (211)
438 3qf7_A RAD50; ABC-ATPase, ATPa 90.7 0.54 1.9E-05 46.2 7.8 23 87-109 25-47 (365)
439 1uj2_A Uridine-cytidine kinase 90.7 0.14 4.8E-06 47.5 3.4 25 84-108 21-45 (252)
440 2p5t_B PEZT; postsegregational 90.7 0.18 6.1E-06 46.9 4.1 26 83-108 30-55 (253)
441 4he6_A Peptidase family U32; u 90.6 0.31 1E-05 37.4 4.7 58 316-377 26-86 (89)
442 1gvn_B Zeta; postsegregational 90.6 0.16 5.5E-06 48.2 3.7 25 84-108 32-56 (287)
443 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.14 4.6E-06 52.3 3.3 26 84-109 137-162 (460)
444 2vp4_A Deoxynucleoside kinase; 90.5 0.1 3.6E-06 47.7 2.3 25 84-108 19-43 (230)
445 1zuh_A Shikimate kinase; alpha 90.5 0.17 5.8E-06 43.5 3.5 24 85-108 7-30 (168)
446 2xb4_A Adenylate kinase; ATP-b 90.5 0.16 5.5E-06 46.1 3.5 22 87-108 2-23 (223)
447 2ze6_A Isopentenyl transferase 90.5 0.14 5E-06 47.6 3.3 22 87-108 3-24 (253)
448 3bh0_A DNAB-like replicative h 90.5 1.5 5.1E-05 42.0 10.6 25 86-110 69-93 (315)
449 2v1u_A Cell division control p 90.4 0.93 3.2E-05 44.2 9.3 27 83-109 42-68 (387)
450 2vhj_A Ntpase P4, P4; non- hyd 90.4 0.27 9.2E-06 47.4 5.0 22 87-108 125-146 (331)
451 2obl_A ESCN; ATPase, hydrolase 90.2 0.17 5.7E-06 49.6 3.5 23 86-108 72-94 (347)
452 3r20_A Cytidylate kinase; stru 90.1 0.19 6.6E-06 46.1 3.7 24 85-108 9-32 (233)
453 4fcw_A Chaperone protein CLPB; 90.1 0.43 1.5E-05 45.3 6.3 27 83-109 45-71 (311)
454 4eaq_A DTMP kinase, thymidylat 90.0 0.24 8.1E-06 45.3 4.2 28 84-111 25-52 (229)
455 2vli_A Antibiotic resistance p 90.0 0.11 3.9E-06 45.1 1.9 23 86-108 6-28 (183)
456 1ak2_A Adenylate kinase isoenz 89.9 0.23 7.8E-06 45.4 4.0 24 85-108 16-39 (233)
457 3euj_A Chromosome partition pr 89.8 0.16 5.5E-06 51.9 3.1 24 86-109 30-53 (483)
458 1e6c_A Shikimate kinase; phosp 89.8 0.16 5.5E-06 43.7 2.8 23 86-108 3-25 (173)
459 2axn_A 6-phosphofructo-2-kinas 89.8 1.2 4.1E-05 46.0 9.8 25 86-110 36-60 (520)
460 2x8a_A Nuclear valosin-contain 89.8 0.17 5.8E-06 47.7 3.1 23 86-108 45-67 (274)
461 2iyv_A Shikimate kinase, SK; t 89.8 0.2 6.7E-06 43.8 3.3 22 87-108 4-25 (184)
462 1cr0_A DNA primase/helicase; R 89.8 0.23 7.8E-06 47.2 4.0 26 86-111 36-61 (296)
463 2f6r_A COA synthase, bifunctio 89.7 0.22 7.4E-06 47.2 3.8 22 85-106 75-96 (281)
464 2woj_A ATPase GET3; tail-ancho 89.6 0.81 2.8E-05 44.8 8.0 42 171-212 234-275 (354)
465 1sxj_E Activator 1 40 kDa subu 89.6 1.6 5.5E-05 42.2 10.2 22 88-109 39-60 (354)
466 3nwj_A ATSK2; P loop, shikimat 89.6 0.18 6E-06 47.0 3.0 23 86-108 49-71 (250)
467 1sxj_A Activator 1 95 kDa subu 89.6 1.1 3.8E-05 46.2 9.4 25 84-108 76-100 (516)
468 2p65_A Hypothetical protein PF 89.6 0.33 1.1E-05 41.8 4.7 27 83-109 41-67 (187)
469 1f2t_A RAD50 ABC-ATPase; DNA d 89.5 0.2 6.8E-06 42.5 3.0 23 87-109 25-47 (149)
470 1yqt_A RNAse L inhibitor; ATP- 89.4 0.17 5.9E-06 52.7 3.1 24 86-109 48-71 (538)
471 1ixz_A ATP-dependent metallopr 89.4 0.19 6.6E-06 46.5 3.1 23 86-108 50-72 (254)
472 2w58_A DNAI, primosome compone 89.3 0.5 1.7E-05 41.8 5.8 25 86-110 55-79 (202)
473 1njg_A DNA polymerase III subu 89.2 0.46 1.6E-05 42.6 5.6 37 74-110 34-70 (250)
474 2z43_A DNA repair and recombin 89.2 2 6.8E-05 41.3 10.4 23 86-108 108-130 (324)
475 2dpy_A FLII, flagellum-specifi 89.1 0.22 7.6E-06 50.3 3.5 23 86-108 158-180 (438)
476 3b60_A Lipid A export ATP-bind 89.1 0.17 5.7E-06 53.3 2.7 24 85-108 369-392 (582)
477 3pfi_A Holliday junction ATP-d 89.1 1.7 5.8E-05 41.7 9.8 27 82-108 52-78 (338)
478 3b5x_A Lipid A export ATP-bind 89.0 0.18 6.2E-06 53.1 2.9 23 86-108 370-392 (582)
479 3gmt_A Adenylate kinase; ssgci 88.9 0.27 9.2E-06 45.0 3.6 25 84-108 7-31 (230)
480 2cvh_A DNA repair and recombin 88.8 0.23 7.9E-06 44.5 3.2 22 86-107 21-42 (220)
481 3umf_A Adenylate kinase; rossm 88.8 0.32 1.1E-05 44.2 4.0 23 86-108 30-52 (217)
482 1in4_A RUVB, holliday junction 88.7 0.24 8.1E-06 48.1 3.4 26 84-109 50-75 (334)
483 3b9p_A CG5977-PA, isoform A; A 88.7 0.97 3.3E-05 42.6 7.6 25 84-108 53-77 (297)
484 3pxg_A Negative regulator of g 88.7 0.65 2.2E-05 47.3 6.7 39 71-110 188-226 (468)
485 3ozx_A RNAse L inhibitor; ATP 88.6 0.17 5.8E-06 52.6 2.3 23 86-108 26-48 (538)
486 3u61_B DNA polymerase accessor 88.6 3.7 0.00013 39.0 11.8 34 75-108 38-71 (324)
487 1xwi_A SKD1 protein; VPS4B, AA 88.5 1.1 3.9E-05 43.0 8.0 26 83-108 43-68 (322)
488 1xx6_A Thymidine kinase; NESG, 88.5 1.5 5.1E-05 38.8 8.1 29 86-114 9-37 (191)
489 4b4t_L 26S protease subunit RP 88.4 2 6.8E-05 43.2 9.9 26 83-108 213-238 (437)
490 3j16_B RLI1P; ribosome recycli 88.4 0.21 7.1E-06 52.8 2.8 23 86-108 104-126 (608)
491 1n0w_A DNA repair protein RAD5 88.4 0.25 8.6E-06 45.0 3.1 23 86-108 25-47 (243)
492 1iy2_A ATP-dependent metallopr 88.3 0.25 8.5E-06 46.5 3.1 22 87-108 75-96 (278)
493 3bgw_A DNAB-like replicative h 88.3 0.95 3.3E-05 45.8 7.6 27 86-112 198-224 (444)
494 1svm_A Large T antigen; AAA+ f 88.3 0.3 1E-05 48.4 3.7 26 83-108 167-192 (377)
495 1q3t_A Cytidylate kinase; nucl 88.1 0.34 1.2E-05 44.3 3.8 26 83-108 14-39 (236)
496 3ake_A Cytidylate kinase; CMP 88.1 0.32 1.1E-05 43.1 3.6 22 87-108 4-25 (208)
497 1q57_A DNA primase/helicase; d 88.0 0.72 2.4E-05 47.4 6.6 24 87-110 244-267 (503)
498 3te6_A Regulatory protein SIR3 87.9 13 0.00044 35.5 15.0 30 82-111 42-71 (318)
499 1yqt_A RNAse L inhibitor; ATP- 87.8 0.26 8.8E-06 51.3 3.1 23 86-108 313-335 (538)
500 2orw_A Thymidine kinase; TMTK, 87.6 1.1 3.6E-05 39.4 6.6 27 87-113 5-31 (184)
No 1
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.3e-68 Score=547.97 Aligned_cols=399 Identities=71% Similarity=1.152 Sum_probs=355.5
Q ss_pred hhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCC-CCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGN-SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 79 ~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~-~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
+.++++.++|+++||+|+|||||+++|++.....|. ..+..++.+|..++|+++|+|++.....++..+..++||||||
T Consensus 5 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG 84 (405)
T 2c78_A 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPG 84 (405)
T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCC
T ss_pred ccCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCC
Confidence 455678899999999999999999999987666554 3333344678999999999999998888988889999999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
|++|..++..+++.+|++|+|+|++++...|+++++.++..+++|++++|+||+|+.+.++.++.+.++++++++.+++.
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999988899999999865556666667888999988886
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEe
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 317 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~s 317 (482)
...+|++++||++|.|.....+....+..+||.++.+|+++|.+.+|.|.+..+.||+|+|+++|+++|+|+|++|+|.+
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~ 244 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIER 244 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCB
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEec
Confidence 66789999999999987666555555667899999999999999999888888999999999999999999999999999
Q ss_pred eeeecCCEEEEecCCc-cceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEee
Q 011581 318 GTIKVGETVDLVGLKE-TRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLK 396 (482)
Q Consensus 318 G~l~~g~~v~i~p~~~-~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~ 396 (482)
|+|++||.|.+.|.+. ...++|++|+.++.++++|.|||+|++.|++++..++++||+|++++.+.+++.|+|++.||+
T Consensus 245 G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~ 324 (405)
T 2c78_A 245 GKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLK 324 (405)
T ss_dssp SEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTTCEEESTTSSEEEEEEEEEEEECC
T ss_pred ccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCCCCceeEEEEEEEEEec
Confidence 9999999999999752 247899999999999999999999999999999999999999999988888899999999999
Q ss_pred cCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEEE
Q 011581 397 KEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGV 476 (482)
Q Consensus 397 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G~ 476 (482)
+++++++.+|..||++++|+++.+++|+|. +. .+++++++||.+.|+|++.+|+|+++++||+||++|+|+|+|+
T Consensus 325 ~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~----~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~lr~~~~ti~~G~ 399 (405)
T 2c78_A 325 KEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP----PGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGV 399 (405)
T ss_dssp GGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC----TTCCCBCTTCEEEEEEEEEEEEEECTTCEEEEEETTEEEEEEE
T ss_pred ccCCCccccccCCceEEEEEcccEEEEEEE-Ec----cCccccCCCCEEEEEEEECceEEEccCCEEEEEcCCeEEEEEE
Confidence 876666679999999999999999999998 53 2356899999999999999999999999999999999999999
Q ss_pred EeeecC
Q 011581 477 IQSIIE 482 (482)
Q Consensus 477 v~~v~~ 482 (482)
|+++++
T Consensus 400 i~~~~~ 405 (405)
T 2c78_A 400 VTKILE 405 (405)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 999875
No 2
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=8.9e-68 Score=540.04 Aligned_cols=386 Identities=55% Similarity=0.946 Sum_probs=348.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
++.++|+++||+|+|||||+++|++.....|...+...+.+|..++|+++|+|++.....++.++..++|||||||++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 35789999999999999999999987666665444444467888999999999999888888888999999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
.++..+++.+|++|+|+|++++...|+++|+.++..+++|++|+|+||||+.++++.++.+.++++++++.+++.+..+|
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP 160 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 99999999999999999999999999999999999999998889999999986555666677788999999888766799
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhh-HHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeee
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDK-IYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIK 321 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~g-i~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~ 321 (482)
++++||++|.|. ...+||.| +.+|+++|.+.+|.|.++.+.||+|+|+++|+++|+|+|++|+|.+|+|+
T Consensus 161 ~i~~SA~~g~n~---------~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~ 231 (397)
T 1d2e_A 161 IIVGSALCALEQ---------RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILK 231 (397)
T ss_dssp EEECCHHHHHTT---------CCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEE
T ss_pred EEEeehhhcccc---------cCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEe
Confidence 999999999841 12479988 99999999999998888889999999999999999999999999999999
Q ss_pred cCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEeecCCCC
Q 011581 322 VGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGG 401 (482)
Q Consensus 322 ~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~~~ 401 (482)
+||.|.+.|.+.+..++|++|+.++.++++|.|||+|++.|++++..++++||+|++++.+.+++.|+|++.||++++++
T Consensus 232 ~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~~~~~~~~f~a~v~~l~~~~~~ 311 (397)
T 1d2e_A 232 KGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGG 311 (397)
T ss_dssp TTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCCEEEEEEEEEECCGGGTS
T ss_pred CCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeCCCCCCcccEEEEEEEEecccccc
Confidence 99999999875335789999999999999999999999999999999999999999988888899999999999987666
Q ss_pred CCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEEEEeeec
Q 011581 402 RHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 402 ~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G~v~~v~ 481 (482)
++.+|..||++++|+++.+++|+|. +. .+++++++||.+.|+|++.+|+|+++++||+||++|+|+|+|+|++++
T Consensus 312 ~~~~~~~g~~~~~~~~t~~~~~~i~-l~----~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~lr~~~~ti~~G~i~~~~ 386 (397)
T 1d2e_A 312 RHKPFVSHFMPVMFSLTWDMACRII-LP----PGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTP 386 (397)
T ss_dssp CSSCBCTTCCCEEEETTEEEEEEEE-CC----SSCCCBCTTCEEEEEEEEEEEECCCTTCEEEEEETTEEEEEEEEEECC
T ss_pred CccccCCCCEEEEEEecCEEEEEEE-Ec----CCcccccCCCEEEEEEEECCeEEEccCCeEEEEeCCeEEEEEEEeecc
Confidence 6679999999999999999999998 43 235789999999999999999999999999999999999999999876
Q ss_pred C
Q 011581 482 E 482 (482)
Q Consensus 482 ~ 482 (482)
+
T Consensus 387 ~ 387 (397)
T 1d2e_A 387 A 387 (397)
T ss_dssp C
T ss_pred c
Confidence 4
No 3
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.4e-67 Score=541.37 Aligned_cols=385 Identities=27% Similarity=0.429 Sum_probs=342.1
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhH---------------HhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMAL---------------ASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 146 (482)
.++++||+++||+|+|||||+|+|++.. .+.|...+..++.+|..++|+++|+|++.....++++
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 4678999999999999999999997642 2345666777889999999999999999999999999
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh-------HHHHHHHHHHHHcCCCcEEEEEecCCCCC---h
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD---D 216 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~t~e~l~~~~~~~ip~iivviNK~D~~~---~ 216 (482)
++.++|||||||++|.+++..+++.+|++|||||+++|.. +|+++|+.++..+++|++|+|+||||+.+ .
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 9999999999999999999999999999999999999986 79999999999999998999999999964 2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC-CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCee
Q 011581 217 EELLQLVELEVRELLSSYEFPGD-DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFL 295 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~-~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~ 295 (482)
++.++.+.+++.++++.+++... .+|++++||++|.|.... ....+||+| ..|++.|.. +++|.+..+.||+
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l-----~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~r 246 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ-----SDFCPWYIG-LPFIPYLDN-LPNFNRSVDGPIR 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc-----cccccccCc-hHHHHHHHh-CCCCccCCCCCeE
Confidence 45667777789999999888543 689999999999854321 224589998 678888876 6777788899999
Q ss_pred EEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeE
Q 011581 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMV 375 (482)
Q Consensus 296 ~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 375 (482)
|+|+++|+ |.|+|++|+|.+|+|++||.|.++|.+. .++|++|+.++.++++|.|||+|+|+|+|++..+++||||
T Consensus 247 ~~v~~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~v 322 (439)
T 3j2k_7 247 LPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKH--NVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 322 (439)
T ss_pred EEEEEEEc--CCCeEEEEEEEeeEEecCCEEEEccCCc--eEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEE
Confidence 99999986 7899999999999999999999999874 7899999999999999999999999999999999999999
Q ss_pred EeCCCCC-CCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEE
Q 011581 376 LAKPGTI-TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIK 446 (482)
Q Consensus 376 l~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~ 446 (482)
|++++++ ..++.|+|+|.||+++ .+|.+||++.+|+|+.+++|+|.+|..+.| .++++++.||.+.
T Consensus 323 l~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~ 397 (439)
T 3j2k_7 323 LCDPSNLCHSGRTFDVQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCI 397 (439)
T ss_pred ecCCCCCCceeeEEEEEEEEeCCC-----CcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEE
Confidence 9998875 4578999999999985 479999999999999999999999876543 3466899999999
Q ss_pred EEEEeCceEeeccC------CeEEEeeCCcEEEEEEEeeecC
Q 011581 447 MVVELIMPVACEQG------MRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 447 v~~~~~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~~ 482 (482)
|++++.+|+|++.+ |||+|||.|+|+|+|+|++|++
T Consensus 398 v~~~~~~p~~~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~~ 439 (439)
T 3j2k_7 398 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVQ 439 (439)
T ss_pred EEEEeCCeEEEeeccccccCCCEEEEECCceEEEEEEEEecC
Confidence 99999999999986 7999999999999999999975
No 4
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=4.7e-66 Score=535.63 Aligned_cols=389 Identities=35% Similarity=0.530 Sum_probs=341.8
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhH---------------HhcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMAL---------------ASLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
+.++.++|+++||+|+|||||+++|++.. .+.|.+.+.+.+.+|..++|+++|+|++.....++.
T Consensus 3 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 34567999999999999999999998752 235666666667789999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChH-------HHHHHHHHHHHcCCCcEEEEEecCCCCC-hH
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNMVVFLNKQDQVD-DE 217 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-------~t~e~l~~~~~~~ip~iivviNK~D~~~-~~ 217 (482)
++..++|||||||++|.+++..++..+|++|||||++++..+ |+++|+.++..+++|++|+|+||||+.+ .+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCH
Confidence 999999999999999999999999999999999999998776 9999999999999988999999999985 34
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhh-----------HHHHHHHhhhcCCCC
Q 011581 218 ELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDK-----------IYELMDSVDSYIPIP 286 (482)
Q Consensus 218 ~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~g-----------i~~Ll~~l~~~l~~~ 286 (482)
+.++.+.++++++++.+++...++|++++||++|.|..... ...+||++ ...|+++|.. +++|
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~-----~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~-~~~p 236 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT-----TNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQP 236 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC-----SSCTTCCCEEEECSSSEEEESSHHHHHHT-SCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc-----ccCchhhcccccccccccchHHHHHHhhc-cCCC
Confidence 55666777899999988875556899999999998643221 22478863 2578888876 5667
Q ss_pred CCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEcccc
Q 011581 287 QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQ 366 (482)
Q Consensus 287 ~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~ 366 (482)
.+..+.|++|+|+++|+++|+|+|++|+|++|.+++||.|.++|.+. .++|++|+.++.+++.|.|||+|++.|+|++
T Consensus 237 ~~~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~ 314 (458)
T 1f60_A 237 SRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGV--TTEVKSVEMHHEQLEQGVPGDNVGFNVKNVS 314 (458)
T ss_dssp CCCTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTE--EEEEEEEEETTEECSCBCTTCEEEEEESSCC
T ss_pred cccCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCc--eEEEeEEEECCeEEEEEcCCCEEEEEEcCCc
Confidence 78889999999999999999999999999999999999999999864 7899999999999999999999999999999
Q ss_pred ccCcccCeEEeCCCC--CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccc
Q 011581 367 KADIQRGMVLAKPGT--ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EES 436 (482)
Q Consensus 367 ~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~ 436 (482)
..++++||+|++++. +.+++.|+|++.||+++ .+|..||++++|+|+.+++|+|..|..+.| +++
T Consensus 315 ~~~i~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~ 389 (458)
T 1f60_A 315 VKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHP 389 (458)
T ss_dssp TTTSCTTCEEEETTSSCCCCCSEEEEEEEECSCS-----CCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESC
T ss_pred ccccCceeEEecCCCCCCceeeEEEEEEEEeCCC-----CCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCc
Confidence 999999999999864 66789999999999875 589999999999999999999999865433 346
Q ss_pred cccCCCCEEEEEEEeCceEeeccCC------eEEEeeCCcEEEEEEEeeecC
Q 011581 437 KMVMPGDRIKMVVELIMPVACEQGM------RFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 437 ~~~~~g~~~~v~~~~~~p~~~~~~~------rfilr~~~~tvg~G~v~~v~~ 482 (482)
+++++||.+.|+|++.+|+|++++. ||+||++|+|+|+|+|+++.+
T Consensus 390 ~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 390 KFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 441 (458)
T ss_dssp SCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC
T ss_pred cccCCCCEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeecc
Confidence 7899999999999999999999986 999999999999999998764
No 5
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=5.5e-65 Score=525.23 Aligned_cols=387 Identities=36% Similarity=0.584 Sum_probs=328.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhH---------------HhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMAL---------------ASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 146 (482)
.++.++|+++||+|+|||||+++|++.. ...|.+.+.+.+.+|..++|+++|+|++.....+++.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 3567999999999999999999998652 2234444444567899999999999999999899999
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-------ChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh---
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--- 216 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-------~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~--- 216 (482)
+..++|||||||++|..++..+++.+|++|+|+|++++ +..|+++|+.++..+++|++|+++||||+.+.
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999998 77899999999999999879999999999872
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeE
Q 011581 217 EELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLL 296 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~ 296 (482)
++.++.+.++++++++.+++....++++++||++|.|...... ..+||+| ..|+++|.. +++|.+..++|+++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~-----~~~~~~g-~~Ll~~l~~-~~~p~~~~~~~~~~ 235 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE-----NMKWYNG-PTLEEYLDQ-LELPPKPVDKPLRI 235 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS-----SCTTCCS-CCHHHHHTT-CCCCCCGGGSCCBE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc-----ccccccc-hhHHHHHhc-cCCCCCCCCCCeEE
Confidence 4556667778999999988866678999999999986533221 2489988 789999877 45576667889999
Q ss_pred EEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEE
Q 011581 297 AVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVL 376 (482)
Q Consensus 297 ~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 376 (482)
+|+++|+++|.|++++|+|.+|+|++||.|.+.|.+. ..+|++|+.++.++++|.|||+|+++|+|++..++++||+|
T Consensus 236 ~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l 313 (435)
T 1jny_A 236 PIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGK--VGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVV 313 (435)
T ss_dssp EEEEEEEETTTEEEEEEECCBSCEETTCEEEEETTTE--EEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEE
T ss_pred EEEEEEEeCCCcEEEEEEEecCeEEcCCEEEECCcee--EEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEe
Confidence 9999999999999999999999999999999999764 78999999999999999999999999999999999999999
Q ss_pred eCCCC-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc--------ccccccCCCCEEEE
Q 011581 377 AKPGT-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKM 447 (482)
Q Consensus 377 ~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--------~~~~~~~~g~~~~v 447 (482)
++++. +..+..|+|++.||+++ .+|..||++++|+|+.+++|+|..|..+.| ++++++++||.+.|
T Consensus 314 ~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v 388 (435)
T 1jny_A 314 GHPNNPPTVADEFTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIV 388 (435)
T ss_dssp ECTTSCCCEESEEEEEEEECCCS-----SCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEE
T ss_pred cCCCCCceEeEEEEEEEEEECCC-----CcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEE
Confidence 99874 56689999999999874 589999999999999999999999865433 34678999999999
Q ss_pred EEEeCceEeeccCC------eEEEeeCCcEEEEEEEeeecC
Q 011581 448 VVELIMPVACEQGM------RFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 448 ~~~~~~p~~~~~~~------rfilr~~~~tvg~G~v~~v~~ 482 (482)
+|++.+|+|++.+. ||+||++|+|+|+|+|+++.+
T Consensus 389 ~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~ 429 (435)
T 1jny_A 389 KFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP 429 (435)
T ss_dssp EEEESSCEECCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECceEEEecCCcCCcCccEEEEECCeEEEEEEEeeecC
Confidence 99999999999986 999999999999999998764
No 6
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=2.5e-64 Score=552.52 Aligned_cols=388 Identities=70% Similarity=1.147 Sum_probs=333.4
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
.+.++.++|+++||+|+|||||+++|++.....|...+..++.+|..++|+++|+|++.....++..+..++|||||||+
T Consensus 291 ~~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 291 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred hccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 35677899999999999999999999987655554443334467888999999999999888898889999999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
+|..++..++..+|++|+|||+++|...|+++|+.++..+++|++|+|+||||+.+.++.++.+.+++.++++.+++.+.
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999998889999999997556666677789999999888666
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeee
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 319 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~ 319 (482)
.+|++++||++|.| +..+||.|+.+|++.|.+.+|.|.+..+.||+++|+++|+++|+|+|++|+|.+|+
T Consensus 451 ~vp~IpvSAktG~n----------g~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGt 520 (1289)
T 3avx_A 451 DTPIVRGSALKALE----------GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 520 (1289)
T ss_dssp TCCEEECCSTTTTT----------CCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSE
T ss_pred ceeEEEEEeccCCC----------CCccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccE
Confidence 79999999999862 23479999999999999999988888889999999999999999999999999999
Q ss_pred eecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEeecCC
Q 011581 320 IKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEE 399 (482)
Q Consensus 320 l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 399 (482)
|++||.|.+.|.+....++|++|++++.++++|.|||+|++.|+|++..++++||+|++++.+.+++.|+|++.||++++
T Consensus 521 LkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~~~~~~~F~A~V~~L~~~e 600 (1289)
T 3avx_A 521 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDE 600 (1289)
T ss_dssp EETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTSCCEEEEEEEEEEECCGGG
T ss_pred EecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEecCCCCccceeEEEEEEEEcccc
Confidence 99999999999864357899999999999999999999999999999999999999999988888999999999999765
Q ss_pred CCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCCcEEEEEEEee
Q 011581 400 GGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQS 479 (482)
Q Consensus 400 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~~tvg~G~v~~ 479 (482)
++++.+|..||++++|+++.+++|+|. +. .+++.+++||.+.|+|++.+|+|+++++||+||++|+|+|+|+|++
T Consensus 601 gg~~~pi~~G~~p~l~igT~~vtg~I~-L~----~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiLRd~grTIG~G~V~~ 675 (1289)
T 3avx_A 601 GGRHTPFFKGYRPQFYFRTTDVTGTIE-LP----EGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAK 675 (1289)
T ss_dssp TSCSSCBCTTCCCEEECSSCEEEEEEE-CC----TTCCCBCTTCCCEEEEEEEEEEECCTTCEEEEEETTEEEEEEEEEE
T ss_pred ccccccccCCCceEEEEeeeeEEEEEE-EC----CCcccccCCCEEEEEEEECceEEEccCCEEEEEeCCeEEEEEEEee
Confidence 555678999999999999999999998 43 2356899999999999999999999999999999999999999998
Q ss_pred ecC
Q 011581 480 IIE 482 (482)
Q Consensus 480 v~~ 482 (482)
+.+
T Consensus 676 v~~ 678 (1289)
T 3avx_A 676 VLS 678 (1289)
T ss_dssp ECC
T ss_pred ech
Confidence 864
No 7
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=2.4e-63 Score=519.60 Aligned_cols=392 Identities=27% Similarity=0.395 Sum_probs=319.5
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhH---------------HhcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMAL---------------ASLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
..++.+||+++|++|+|||||+++|++.. ...|.+.+...+.+|....|+++|+|++.....+++
T Consensus 29 ~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 108 (483)
T 3p26_A 29 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 108 (483)
T ss_dssp HSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec
Confidence 36788999999999999999999998651 134556667778899999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-------ChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-H
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-E 217 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-------~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~ 217 (482)
.+..++|||||||++|..++..++..+|++|+|+|++++ ...|+++|+.++..++++++|+|+||||+.++ +
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999999998 56899999999999998889999999999873 4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhh--HHHHHHHhhhcCCC--CCCCCCCC
Q 011581 218 ELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDK--IYELMDSVDSYIPI--PQRQTDLP 293 (482)
Q Consensus 218 ~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~g--i~~Ll~~l~~~l~~--~~~~~~~~ 293 (482)
+.++.+.+++.++++.+++....++++++||++|.|....... ....+||+| +.++|+.+...+|. |.+..+.|
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~--~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYT--DEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCC--HHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcc--cccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 5667777788899988888666789999999999853221110 011579987 44555555444443 56678899
Q ss_pred eeEEEEeEEeeC---CCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc--------cccceeecCCeEEEEE
Q 011581 294 FLLAVEDVFSIT---GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ--------KTLDEAMAGDNVGLLL 362 (482)
Q Consensus 294 ~~~~I~~v~~v~---g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~--------~~v~~a~aG~~v~l~l 362 (482)
|+|+|+++|+++ |.|+|++|+|++|+|++||.|.++|.+. .++|++|++++ .++++|.|||+|+|+|
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l 344 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 344 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTE--EEEEEEEEETTTC-----CCEESCEETTCEEEEEE
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCC--eEEEEEEEEcCccccccccccccEECCCCEEEEEE
Confidence 999999999988 5899999999999999999999999875 78999999984 8899999999999999
Q ss_pred ccccccCcccCeEEeCCCC--CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc-------
Q 011581 363 RGVQKADIQRGMVLAKPGT--ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------- 433 (482)
Q Consensus 363 ~~~~~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------- 433 (482)
++++..++++||||+++++ +.+++.|+|+|.||+++ .+|.+||++++|+|+.+++|+|..|..+.|
T Consensus 345 ~~~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~ 419 (483)
T 3p26_A 345 RKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASK 419 (483)
T ss_dssp ESCCGGGCCTTCEEECTTCCCCEECSEEEEEEEECSCS-----SCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECC
T ss_pred EecccccCCceEEEEcCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccc
Confidence 9999999999999999876 66789999999999875 589999999999999999999999865443
Q ss_pred ccccccCCCCEEEEEEEe---CceEeecc------CCeEEEeeCCcEEEEEEEeeec
Q 011581 434 EESKMVMPGDRIKMVVEL---IMPVACEQ------GMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 434 ~~~~~~~~g~~~~v~~~~---~~p~~~~~------~~rfilr~~~~tvg~G~v~~v~ 481 (482)
++++++++||.+.|+|++ .+|+|++. .|||+||++|+|+|+|+|+.+.
T Consensus 420 ~~~~~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~ 476 (483)
T 3p26_A 420 KKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 476 (483)
T ss_dssp SCCSCBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEEC
T ss_pred cCccCcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEec
Confidence 346789999999999999 78999996 4899999999999999999864
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-65 Score=544.10 Aligned_cols=387 Identities=27% Similarity=0.428 Sum_probs=300.3
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHH---------------hcCCCCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALA---------------SLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
+.++.++|+++||+|+|||||+++|++... ..|.+.+...+.+|.+++|+++|+|++.....+++
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 456789999999999999999999986432 23455666678999999999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-------hHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hH
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-------MPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DE 217 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~ 217 (482)
+++.++|||||||++|..++..+++.+|++|||||+++|. ..|+++|+.++..+++|++|+|+||||+++ ..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCH
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccH
Confidence 9999999999999999999999999999999999999864 899999999999999988999999999987 34
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeE
Q 011581 218 ELLQLVELEVRELL-SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLL 296 (482)
Q Consensus 218 ~~~~~i~~~i~~~l-~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~ 296 (482)
+.++.+..++.+++ +.+++....+|++++||++|.|..... .....+||+| .+|++.|.+.+| |.+..+.||+|
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~---~~~~~~w~~g-~~Lle~l~~~~p-p~~~~~~p~r~ 407 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD---SSDLYKWYKG-PTLLSALDQLVP-PEKPYRKPLRL 407 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCC---CCGGGGTCCS-CCHHHHHHTSCC-CSCTTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccc---ccccccccch-HHHHHHHHhhcc-ccccccccchh
Confidence 56667777899999 888887667899999999998532211 1124589988 789999998776 66778899999
Q ss_pred EEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccc-eeecCCeEEEEEccccccCcccCeE
Q 011581 297 AVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLD-EAMAGDNVGLLLRGVQKADIQRGMV 375 (482)
Q Consensus 297 ~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~-~a~aG~~v~l~l~~~~~~~i~~G~v 375 (482)
+|+++|++ +.|++++|+|.+|+|++||.|.++|.+. .++|++|++++.+++ .|.|||+|+|+|+|++..++++|||
T Consensus 408 ~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~--~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~v 484 (592)
T 3mca_A 408 SIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQE--DAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDI 484 (592)
T ss_dssp EEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTE--EEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCE
T ss_pred eeeEEEec-CCeEEEEEEEeeeeEccCCEEEEccCCc--eEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEE
Confidence 99999999 9999999999999999999999999875 789999999999999 9999999999999999999999999
Q ss_pred EeCCCC-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEE-eCc
Q 011581 376 LAKPGT-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVE-LIM 453 (482)
Q Consensus 376 l~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~-~~~ 453 (482)
||+++. +.+++.|+|++.||+++ .||..||++++|+|+.+++|+| .|......+++++++||.+.|+|+ +.+
T Consensus 485 l~~~~~~~~~~~~f~a~v~~~~~~-----~pi~~g~~~~l~~~t~~~~~~i-~l~~~~~~~~~~l~~gd~~~v~l~fl~~ 558 (592)
T 3mca_A 485 LSNYENPVRRVRSFVAEIQTFDIH-----GPILSGSTLVLHLGRTVTSVSL-KIVTVNNKRSRHIASRKRALVRISFLDG 558 (592)
T ss_dssp EECSSSCCEEESEEEEEEEECSCS-----SCEETTEEEEEECSSCEEEEEE-EEEESSSSCCSEECSSCEEEEEEEESSS
T ss_pred eccCCCCccccCeEEEEEEEECCC-----ccCCCCCEEEEEEcCcEEEEEE-EEEeccccchhccCCCCEEEEEEEECCC
Confidence 999876 45679999999999875 5899999999999999999999 876544456789999999999999 999
Q ss_pred eEee------ccCCeEEEeeCCcEEEEEEEeeec
Q 011581 454 PVAC------EQGMRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 454 p~~~------~~~~rfilr~~~~tvg~G~v~~v~ 481 (482)
|+|+ .+++||+||++|+|+|+|+|++|+
T Consensus 559 p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 559 LFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp CEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred cEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 9999 456899999999999999999985
No 9
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=7.1e-65 Score=528.07 Aligned_cols=386 Identities=29% Similarity=0.464 Sum_probs=300.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHH---------------hcCCCCCcccccccCChhhhcCCceeeeeeeEeecC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALA---------------SLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~ 146 (482)
.++.++|+++||+|+|||||+++|++... ..|+..+...+.+|..++|+++|+|++.....++++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 35678999999999999999999986321 124344445667899999999999999998899999
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCCh-------HHHHHHHHHHHHcCCCcEEEEEecCCCCC---h
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD---D 216 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~~t~e~l~~~~~~~ip~iivviNK~D~~~---~ 216 (482)
++.++|||||||++|.+++..+++.+|++|||||+++|.. +|+++|+.++..+++|++|+|+||||+.+ .
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 9999999999999999999999999999999999999974 79999999999999998999999999964 2
Q ss_pred HHHHHHHHHHHHHHHhhc-CCC-CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCe
Q 011581 217 EELLQLVELEVRELLSSY-EFP-GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPF 294 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~-~~~-~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~ 294 (482)
++.++.+..++.++++.+ ++. ..+++++++||++|.|..... .....+||.| ..|++.|.. ++.|.+..+.||
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~---~~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~p~ 274 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV---DSSVCPWYQG-PSLLEYLDS-MTHLERKVNAPF 274 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC---CTTTCSSCCS-CCHHHHHHH-CCCCHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc---ccccCccccc-hhHHHHHHh-CCCCcCCCCCCc
Confidence 456677777888998887 764 235899999999998543221 1234589998 568888776 677777778999
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec-ccccceeecCCeEEEEEccccccCcccC
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF-QKTLDEAMAGDNVGLLLRGVQKADIQRG 373 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G 373 (482)
+|+|+++|+ +.|+|++|+|.+|+|++||.|.++|.+. .++|++|+.+ +.++++|.|||+|+++|+| +..++++|
T Consensus 275 ~~~v~~~~~--~~G~v~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG 349 (467)
T 1r5b_A 275 IMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQ--TLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTG 349 (467)
T ss_dssp EEECCEEEE--SSSEEEEEECCBSEEETTEEEEEETTTE--EEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTT
T ss_pred EEEEEEEEe--CCCeEEEEEEeeeEEeeCCEEEEccCCe--eEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCce
Confidence 999999997 5789999999999999999999999864 7899999998 8999999999999999999 88999999
Q ss_pred eEEeCCCC-CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc-------ccccccCCCCEE
Q 011581 374 MVLAKPGT-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD-------EESKMVMPGDRI 445 (482)
Q Consensus 374 ~vl~~~~~-~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~-------~~~~~~~~g~~~ 445 (482)
|+|++++. +.+++.|+|++.||+++ .+|..||++++|+|+.+++|+|..|....+ .+++++++||.+
T Consensus 350 ~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~ 424 (467)
T 1r5b_A 350 YVLTSTKNPVHATTRFIAQIAILELP-----SILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKI 424 (467)
T ss_dssp CEEECSSSCCCEEEEEEEEEEECSSC-----CCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBC
T ss_pred EEEeCCCCCCccceEEEEEEEEeCCC-----CccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEE
Confidence 99999874 56689999999999874 579999999999999999999988764433 246789999999
Q ss_pred EEEEEeCceEeeccC------CeEEEeeCCcEEEEEEEeeecC
Q 011581 446 KMVVELIMPVACEQG------MRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 446 ~v~~~~~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~~ 482 (482)
.|+|++.+|+|++.+ +||+|||+|+|+|+|+|++|++
T Consensus 425 ~v~l~~~~p~~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~~ 467 (467)
T 1r5b_A 425 IAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467 (467)
T ss_dssp CEEEEEEEEEECCCTTTCHHHHEEEEECSSSCEEEEEEEEEEC
T ss_pred EEEEEECcEEEEEEcCcCCCCccEEEEECCeEEEEEEEEEecC
Confidence 999999999999998 4999999999999999999875
No 10
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-62 Score=524.44 Aligned_cols=394 Identities=27% Similarity=0.403 Sum_probs=339.2
Q ss_pred hhhccCCceEEEEEecCCccHHHHHHHHHHhH---------------HhcCCCCCcccccccCChhhhcCCceeeeeeeE
Q 011581 78 KFERKKPHVNIGTIGHVDHGKTTLTAALTMAL---------------ASLGNSAPKKYDEIDAAPEERARGITINTATVE 142 (482)
Q Consensus 78 ~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~ 142 (482)
.+...++.++|+++||+|+|||||+|+|++.. ...|.+.+...+.+|....|+.+|+|++.....
T Consensus 160 ~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~ 239 (611)
T 3izq_1 160 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH 239 (611)
T ss_dssp -CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCE
T ss_pred HHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEE
Confidence 34456778999999999999999999998541 134556677778889999999999999999999
Q ss_pred eecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-------ChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-------~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
+++.+..++|||||||++|..++..+++.+|++|+|||+++| ...|+++|+.++..++++++|+|+||||+.+
T Consensus 240 ~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 240 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp EECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred EecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 999999999999999999999999999999999999999987 4689999999999999988999999999987
Q ss_pred h-HHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc---CCC--CCCC
Q 011581 216 D-EELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY---IPI--PQRQ 289 (482)
Q Consensus 216 ~-~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~---l~~--~~~~ 289 (482)
+ ...++.+..++..+++.+++....++++++||++|.|....... ....+||+| +.|++.|... .|. |.+.
T Consensus 320 ~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~--~~~~~Wy~g-~~L~~~L~~l~~~~p~~~p~~~ 396 (611)
T 3izq_1 320 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYT--DEVRQWYNG-PNLMSTLENAAFKISKENEGIN 396 (611)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTS--CTTCCSCCS-CCHHHHHTTSCCCCCCSSSCCS
T ss_pred hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCcc--ccccccccC-CcHHHHHHHHhhcccccCcccc
Confidence 3 45666677788899998888666789999999999854222110 112589987 4566655553 333 4566
Q ss_pred CCCCeeEEEEeEEeeC---CCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc--------cccceeecCCeE
Q 011581 290 TDLPFLLAVEDVFSIT---GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ--------KTLDEAMAGDNV 358 (482)
Q Consensus 290 ~~~~~~~~I~~v~~v~---g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~--------~~v~~a~aG~~v 358 (482)
.+.||+|+|+++|+++ |.|+|++|+|.+|+|++||.|.++|.+. .++|++|++++ .++++|.|||+|
T Consensus 397 ~~~p~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~--~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v 474 (611)
T 3izq_1 397 KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQ--SCIVDKIQVGSQQGQSTNHEETDVAIKGDFV 474 (611)
T ss_dssp CCSCCEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTE--EEEEEEEECSSCCSCSSSCCCCCCEETTCEE
T ss_pred cccchhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCc--eEEEEEEEEcccccccccccccceecCCCcc
Confidence 7899999999999998 5899999999999999999999999875 78999999984 789999999999
Q ss_pred EEEEccccccCcccCeEEeCCCC--CCCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc---
Q 011581 359 GLLLRGVQKADIQRGMVLAKPGT--ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD--- 433 (482)
Q Consensus 359 ~l~l~~~~~~~i~~G~vl~~~~~--~~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~--- 433 (482)
+|+|++++..+++||||||++++ +.+++.|+|+|.||+++ .||.+||++++|+|+.+++|+|..|..+.+
T Consensus 475 ~l~l~~~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~~-----~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t 549 (611)
T 3izq_1 475 TLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDMN-----RPLLPGTPFILFIGVKEQPARIKRLISFIDKGN 549 (611)
T ss_dssp EEEESSCCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSCS-----SCBCTTEEEEEESSSCEEEEEEEEEEESSSSCC
T ss_pred eEEeeeccHhhCcceEEccCCCCCCCceeeEEEEEEEEECCC-----CCCCCCCEEEEEECCeEeeEEeeeeeeeecccc
Confidence 99999999999999999999876 66789999999999875 589999999999999999999999976443
Q ss_pred ----ccccccCCCCEEEEEEEe---CceEeeccC------CeEEEeeCCcEEEEEEEeeec
Q 011581 434 ----EESKMVMPGDRIKMVVEL---IMPVACEQG------MRFAIREGGKTVGAGVIQSII 481 (482)
Q Consensus 434 ----~~~~~~~~g~~~~v~~~~---~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~ 481 (482)
.+++++++||.+.|+|++ .+|+|++.+ |||+||+.|+|+|+|+|++|.
T Consensus 550 ~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 550 TASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp CBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred cccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 345689999999999999 789999984 799999999999999999885
No 11
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=6.7e-60 Score=487.33 Aligned_cols=380 Identities=24% Similarity=0.349 Sum_probs=317.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhc---------------CC--CCCcccccccCChhhhcCCceeeeeeeEeec
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASL---------------GN--SAPKKYDEIDAAPEERARGITINTATVEYET 145 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---------------g~--~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~ 145 (482)
++.++|+++||+|+|||||+++|++..... +. ..+.+.+.+|..++|+++|+|++.....++.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998753111 11 1222334578889999999999999999999
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh-HHHHHHHH
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD-EELLQLVE 224 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~-~~~~~~i~ 224 (482)
++..++|||||||++|..++..++..+|++|+|+|++++...|+++|+.++..++++++|+|+||+|+.++ ++.++.+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999879999999999874 45566666
Q ss_pred HHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEee
Q 011581 225 LEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSI 304 (482)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v 304 (482)
+++.++++.+++....++++++||++|.|.... ....+||+| +.|++.|.. ++.|.+..+.||+++|+++|+.
T Consensus 182 ~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~-----~~~~~w~~g-~~L~~~l~~-i~~~~~~~~~~~~~~v~~v~~~ 254 (434)
T 1zun_B 182 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK-----SERSPWYAG-QSLMEILET-VEIASDRNYTDLRFPVQYVNRP 254 (434)
T ss_dssp HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC-----CTTCTTCCS-CCTTHHHHH-SCCTTCCCSSSCEEECCEEECS
T ss_pred HHHHHHHHHhCCCccCceEEEEeccCCCCcccc-----cccCccccC-chHHHHHhc-CCCcccCCCCCcEEEEEEEecc
Confidence 788888888874334689999999999854221 123479987 456665554 5667777789999999999988
Q ss_pred CCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCC-C
Q 011581 305 TGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI-T 383 (482)
Q Consensus 305 ~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~-~ 383 (482)
.+.|+.+.|+|.+|+|++||.|.++|.+. ..+|++|+.++.++++|.|||+|++.++ +..++++||+|++++++ .
T Consensus 255 ~~~~~g~~G~v~~G~l~~gd~v~~~p~~~--~~~V~~i~~~~~~~~~a~aG~~v~~~l~--~~~~i~~G~~l~~~~~~~~ 330 (434)
T 1zun_B 255 NLNFRGFAGTLASGIVHKGDEIVVLPSGK--SSRVKSIVTFEGELEQAGPGQAVTLTME--DEIDISRGDLLVHADNVPQ 330 (434)
T ss_dssp SSSCCEEEEECCBSCEETTCEEEETTTCC--EEEEEEEEETTEEESEECTTCEEEEEES--SCCCCCTTCEEEETTSCCC
T ss_pred CCCceEEEEEEecceEeCCCEEEEecCCe--EEEEEEEEEcCcceeEecCCCEEEEEeC--CccccCCccEEECCCCCCC
Confidence 77788899999999999999999999764 7899999999999999999999999998 35689999999998775 6
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeecccc------ccccccCCCCEEEEEEEeCceEee
Q 011581 384 PHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELIMPVAC 457 (482)
Q Consensus 384 ~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~~~~g~~~~v~~~~~~p~~~ 457 (482)
+++.|+|++.||+. .+|..||++++|+|+.+++|+|..+..+.| ++++++++||.+.|+|++.+|+|+
T Consensus 331 ~~~~f~a~~~~l~~------~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~ 404 (434)
T 1zun_B 331 VSDAFDAMLVWMAE------EPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIAL 404 (434)
T ss_dssp EEEEEEEEEEECCS------SCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEEC
T ss_pred cccEEEEEEEEecc------ccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEE
Confidence 68999999999963 489999999999999999999999875433 346789999999999999999999
Q ss_pred ccCC------eEEEeeC--CcEEEEEEEee
Q 011581 458 EQGM------RFAIREG--GKTVGAGVIQS 479 (482)
Q Consensus 458 ~~~~------rfilr~~--~~tvg~G~v~~ 479 (482)
+++. ||+|||. |+|+|+|+|+.
T Consensus 405 ~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 405 DGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp CCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred cccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 9886 9999864 89999999973
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=2e-60 Score=495.81 Aligned_cols=363 Identities=28% Similarity=0.446 Sum_probs=306.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.++.++|+++||+|+|||||+++|++... ...+|..++|+++|+|++..+..+++++..++|||||||++|
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~ 86 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL 86 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH
Confidence 34578999999999999999999985421 124677889999999999988888889999999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc-CCCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY-EFPGDD 240 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~-~~~~~~ 240 (482)
.+++..++..+|++|||+|+++|..+|+++|+.++..+++|. |+|+||+|+.+. +..+.+.+++.++++.. ++. .
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~--~ 162 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGT-EEIKRTEMIMKSILQSTHNLK--N 162 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCH-HHHHHHHHHHHHHHHHSSSGG--G
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccc-hhHHHHHHHHHHHHhhhcccc--c
Confidence 999999999999999999999999999999999999999995 899999999974 44455666888888876 553 5
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC--CCCCCCCeeEEEEeEEeeCCCceEEEEEEEee
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP--QRQTDLPFLLAVEDVFSITGRGTVATGRVERG 318 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~--~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG 318 (482)
+|++++||++|. |+.+|+++|.+.++.| .++.+.||+++|+++|.++|.|+|++|+|.+|
T Consensus 163 ~~ii~vSA~~g~------------------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G 224 (482)
T 1wb1_A 163 SSIIPISAKTGF------------------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKG 224 (482)
T ss_dssp CCEEECCTTTCT------------------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBS
T ss_pred ceEEEEECcCCC------------------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEe
Confidence 799999999998 8899999999876555 66778899999999999999999999999999
Q ss_pred eeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEE-eCCCCCCCCceEEEEEEEeec
Q 011581 319 TIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVL-AKPGTITPHTKFLAIVYVLKK 397 (482)
Q Consensus 319 ~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl-~~~~~~~~~~~f~a~v~~l~~ 397 (482)
.|++||.|.+.|.+. ..+|++|+.+++++++|.|||+|++.+++++..++++||+| +.++.+.+++.|+|++.||++
T Consensus 225 ~l~~gd~v~~~p~~~--~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~~~~~~~~~~~a~v~~l~~ 302 (482)
T 1wb1_A 225 IVKVGDELKVLPINM--STKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVAKIKISDI 302 (482)
T ss_dssp CCCSSEEECCTTTCC--CEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTTCCCCCEEEEEECCCCCSS
T ss_pred EEeeCCEEEECCCCc--EEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCCCCCceeeEEEEEEEEecc
Confidence 999999999998764 68999999999999999999999999999988999999999 777778888999999999986
Q ss_pred CCCCCCCCCCCCCccEEEEeeeeeeeeEeeee-cccccc-----ccccCCCCEEEEEEEeCceEeeccCCeEEEee---C
Q 011581 398 EEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIM-NDKDEE-----SKMVMPGDRIKMVVELIMPVACEQGMRFAIRE---G 468 (482)
Q Consensus 398 ~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~-~~~~~~-----~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~---~ 468 (482)
. ..+|..||++++|+|+.+++|+|..+. .+.|.+ ++++++||.+.|+|++.+|+|+++++||+||+ +
T Consensus 303 ~----~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~ 378 (482)
T 1wb1_A 303 F----KYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLP 378 (482)
T ss_dssp C----CSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSC
T ss_pred C----CcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCC
Confidence 3 258999999999999999999999987 443322 46799999999999999999999999999998 4
Q ss_pred ---CcEEEEEEEeeec
Q 011581 469 ---GKTVGAGVIQSII 481 (482)
Q Consensus 469 ---~~tvg~G~v~~v~ 481 (482)
++|+|+|+|++++
T Consensus 379 ~~~~~tvg~G~v~~~~ 394 (482)
T 1wb1_A 379 PTTLRIXGHGLIEEFK 394 (482)
T ss_dssp TTSCCCCCBCCEEECC
T ss_pred ccCceEeeEEEEEecc
Confidence 7999999999874
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=2.6e-58 Score=464.01 Aligned_cols=337 Identities=21% Similarity=0.303 Sum_probs=293.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 166 (482)
+|+++||+|+|||||+++|+ ++|+|++.....++++++.++|||||||++|.+++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 89999999999999999985 568899998889999999999999999999999999
Q ss_pred hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEe-cCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 167 TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLN-KQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 167 ~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
.+++.+|++|+||| ++|+.+|+++|+.++..+++|++|+++| |||+ + .+..+.+.++++++++.+++ ..+|+++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~--~~~~ii~ 153 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVL--QDWECIS 153 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTT--TTCEEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCC--CceEEEe
Confidence 99999999999999 9999999999999999999996588999 9999 5 34444455688888887765 3689999
Q ss_pred --cchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC---CCC-CCCCeeEEEEeEEeeCCCceEEEEEEEeee
Q 011581 246 --GSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP---QRQ-TDLPFLLAVEDVFSITGRGTVATGRVERGT 319 (482)
Q Consensus 246 --~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~---~~~-~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~ 319 (482)
+||+++. |++|+++|++.|.+.++.+ ... ...|++++|+++|+++++|++++|+|++|+
T Consensus 154 ~~~SA~~~~---------------~g~gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~ 218 (370)
T 2elf_A 154 LNTNKSAKN---------------PFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGI 218 (370)
T ss_dssp CCCCTTSSS---------------TTTTHHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESE
T ss_pred cccccccCc---------------CCCCHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCE
Confidence 9999821 4559999999998876543 112 345789999999999999999999999999
Q ss_pred eecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCcccCeEEeCCCCCCCCceEEEEEEEeecCC
Q 011581 320 IKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEE 399 (482)
Q Consensus 320 l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~v~~l~~~~ 399 (482)
|++||+|.+.|.+. ..+|++|+.++.++++|.|||+|+++|++++..++++||+|++ ++ .+++.|+|++.||+++
T Consensus 219 l~~gd~v~~~p~~~--~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-~~-~~~~~f~a~v~~l~~~- 293 (370)
T 2elf_A 219 SKDKDKTKIFPLDR--DIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-KE-IVTTDYTLECTVSKFT- 293 (370)
T ss_dssp EETTCEEEEETTTE--EEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES-CC-EEEEEEEEEEEECTTS-
T ss_pred EeeCCEEEECCCCc--EEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC-CC-ceeEEEEEEEEEECCC-
Confidence 99999999999864 7899999999999999999999999999999999999999998 55 7789999999999874
Q ss_pred CCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEEEEeCceEeeccCCeEEEeeCC---cEEEEEE
Q 011581 400 GGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGG---KTVGAGV 476 (482)
Q Consensus 400 ~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~~~---~tvg~G~ 476 (482)
.+|..||++++|+|+.+++|+|..+..+.+ ..+.+++||.+.|+|++.+|+|+++++||+||+.+ +|+|+|.
T Consensus 294 ----~~i~~g~~~~~~~~t~~~~~~v~~l~~d~~-~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr~~~~~~~tig~G~ 368 (370)
T 2elf_A 294 ----KKIEPASVLHLFVGLQSEPVRVEKILVDGN-EVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGF 368 (370)
T ss_dssp ----CCBCTTCEEEEEETTEEEEEEEEEEEETTE-EESCBCTTCEEEEEEEEEEEEEECTTSCEEEECTTSSSCEEEEEE
T ss_pred ----CCCCCCCEEEEEEcCCEEEEEEEEEEeCCC-cceeecCCCEEEEEEEECcEEEEeCCCEEEEEECCCCCEEEEEEE
Confidence 589999999999999999999999853111 12356799999999999999999999999999865 6999998
Q ss_pred E
Q 011581 477 I 477 (482)
Q Consensus 477 v 477 (482)
|
T Consensus 369 ~ 369 (370)
T 2elf_A 369 S 369 (370)
T ss_dssp E
T ss_pred e
Confidence 7
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=4.9e-57 Score=462.98 Aligned_cols=350 Identities=32% Similarity=0.496 Sum_probs=297.6
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---------------
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET--------------- 145 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--------------- 145 (482)
.+++.++|+++||+|+|||||+++|++. ..+.+.+|+++|+|++..+..+.+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 72 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 72 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeecccccccccccccccc
Confidence 3567899999999999999999999843 346778899999999876554332
Q ss_pred C--------CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHcCCCcEEEEEecCCCCCh
Q 011581 146 E--------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 146 ~--------~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
. ...++|||||||++|.+++..++..+|++|||||+++|. .+|+++|+..+..++++++|+|+||+|+.+.
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDK 152 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCH
Confidence 1 167999999999999999999999999999999999997 8999999999999998779999999999985
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeE
Q 011581 217 EELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLL 296 (482)
Q Consensus 217 ~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~ 296 (482)
++..+.. +++.++++.... ..+|++++||++|. |+.+|+++|.+.++.|.++.+.|+++
T Consensus 153 ~~~~~~~-~~i~~~l~~~~~--~~~~~i~vSA~~g~------------------gi~~L~~~l~~~~~~p~~~~~~~~~~ 211 (410)
T 1kk1_A 153 EKALENY-RQIKEFIEGTVA--ENAPIIPISALHGA------------------NIDVLVKAIEDFIPTPKRDPNKPPKM 211 (410)
T ss_dssp HHHHHHH-HHHHHHHTTSTT--TTCCEEECBTTTTB------------------SHHHHHHHHHHHSCCCCCCTTSCCEE
T ss_pred HHHHHHH-HHHHHHHHhcCc--CCCeEEEeeCCCCC------------------CHHHHHHHHHHhCCCCccccCCCcEE
Confidence 5433322 367777775432 46899999999998 89999999999888888888899999
Q ss_pred EEEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCCc----------cceeEEEEEeecccccceeecCCeE
Q 011581 297 AVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLKE----------TRNFTVTGVEMFQKTLDEAMAGDNV 358 (482)
Q Consensus 297 ~I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~~~----------~~~~~V~~i~~~~~~v~~a~aG~~v 358 (482)
+|+++|++++ +|+|++|+|.+|+|++||.|.++|.+. ....+|++|+.++.++++|.|||+|
T Consensus 212 ~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~~~~v~~a~aG~~v 291 (410)
T 1kk1_A 212 LVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLV 291 (410)
T ss_dssp EEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCE
T ss_pred EEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEECCeEecEEcCCCEE
Confidence 9999998754 788999999999999999999998532 1257999999999999999999999
Q ss_pred EEEEc---cccccCcccCeEEeCCCCCCC-CceEEEEEEEeecCCCCC----CCCCCCCCccEEEEeeeeeeeeEeeeec
Q 011581 359 GLLLR---GVQKADIQRGMVLAKPGTITP-HTKFLAIVYVLKKEEGGR----HSPFFAGYRPQFYMRTTDVTGRVSSIMN 430 (482)
Q Consensus 359 ~l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~i~~ 430 (482)
++.++ ++...++.+||||++++.+++ ++.|+|++.||++.++.+ ..+|..||++++|+|+.+++|+|..+..
T Consensus 292 ~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~ 371 (410)
T 1kk1_A 292 GVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGLVTGLGK 371 (410)
T ss_dssp EEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEET
T ss_pred EEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCCEEEEEEcCCEEeEEEEEecC
Confidence 99986 566688999999999987555 679999999998853332 3689999999999999999999999853
Q ss_pred cccccccccCCCCEEEEEEEeCceEeeccCCeEEEee----CCcEEEEEEEe
Q 011581 431 DKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIRE----GGKTVGAGVIQ 478 (482)
Q Consensus 431 ~~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~----~~~tvg~G~v~ 478 (482)
| .++|+|.+|+|+++|+||+||+ +++|+|+|.|+
T Consensus 372 ------------~--~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 372 ------------D--EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp ------------T--EEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred ------------C--EEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 3 7788899999999999999998 68999999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.4e-57 Score=463.69 Aligned_cols=349 Identities=31% Similarity=0.474 Sum_probs=286.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---------------C
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET---------------E 146 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---------------~ 146 (482)
+++.++|+++||+|+|||||+++|++. ..+.+.+|+++|+|++..+..+.. .
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 457899999999999999999999743 346678889999999776543221 1
Q ss_pred --------CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHcCCCcEEEEEecCCCCChH
Q 011581 147 --------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE 217 (482)
Q Consensus 147 --------~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~ 217 (482)
...++|||||||++|.+++..++..+|++|||+|++++. .+|+++|+..+..++++++|+|+||+|+.+.+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 167999999999999999999999999999999999997 89999999999989987799999999998754
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEE
Q 011581 218 ELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLA 297 (482)
Q Consensus 218 ~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~ 297 (482)
+..+ ..+++.++++.+.. ..+|++++||++|. |+++|+++|.+.++.|.++.+.|++++
T Consensus 152 ~~~~-~~~~i~~~l~~~~~--~~~~~i~vSA~~g~------------------gi~~L~~~l~~~i~~~~~~~~~~~~~~ 210 (408)
T 1s0u_A 152 QAEE-NYEQIKEFVKGTIA--ENAPIIPISAHHEA------------------NIDVLLKAIQDFIPTPKRDPDATPRMY 210 (408)
T ss_dssp TTTT-HHHHHHHHHTTSTT--TTCCEEEC------------------------CHHHHHHHHHHHSCCCCCCTTSCCEEE
T ss_pred HHHH-HHHHHHHHHhhcCC--CCCeEEEeeCCCCC------------------CHHHHHHHHHHhCCCCcccCCCCeEEE
Confidence 2211 12366677765432 46899999999998 899999999998888888889999999
Q ss_pred EEeEEeeCC--------CceEEEEEEEeeeeecCCEEEEecCCc----------cceeEEEEEeecccccceeecCCeEE
Q 011581 298 VEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLKE----------TRNFTVTGVEMFQKTLDEAMAGDNVG 359 (482)
Q Consensus 298 I~~v~~v~g--------~G~v~~G~v~sG~l~~g~~v~i~p~~~----------~~~~~V~~i~~~~~~v~~a~aG~~v~ 359 (482)
|+++|++++ +|+|++|+|.+|+|++||.|.++|.+. ....+|++|+.++.++++|.|||+|+
T Consensus 211 v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~ 290 (408)
T 1s0u_A 211 VARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNTILRKAHPGGLIG 290 (408)
T ss_dssp EEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETTEEESEECSSSCEE
T ss_pred EEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECCEEcCEEeCCCeEE
Confidence 999998865 788999999999999999999998531 12579999999999999999999999
Q ss_pred EEEc---cccccCcccCeEEeCCCCCCC-CceEEEEEEEeecCCCCC----CCCCCCCCccEEEEeeeeeeeeEeeeecc
Q 011581 360 LLLR---GVQKADIQRGMVLAKPGTITP-HTKFLAIVYVLKKEEGGR----HSPFFAGYRPQFYMRTTDVTGRVSSIMND 431 (482)
Q Consensus 360 l~l~---~~~~~~i~~G~vl~~~~~~~~-~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~ 431 (482)
+.++ +++..++++||||++++.+++ ++.|+|++.||++.++.+ ..+|..||++++|+|+.+++|+|..+..
T Consensus 291 ~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~~~- 369 (408)
T 1s0u_A 291 VGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSARG- 369 (408)
T ss_dssp EECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET-
T ss_pred EEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEecC-
Confidence 9986 677789999999999987555 679999999999864433 3689999999999999999999999853
Q ss_pred ccccccccCCCCEEEEEEEeCceEeeccCCeEEEee----CCcEEEEEEEe
Q 011581 432 KDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIRE----GGKTVGAGVIQ 478 (482)
Q Consensus 432 ~~~~~~~~~~g~~~~v~~~~~~p~~~~~~~rfilr~----~~~tvg~G~v~ 478 (482)
| .++++|.+|+|+++|+||+||+ +++|+|+|.|+
T Consensus 370 -----------~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 370 -----------D--IADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp -----------T--EEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred -----------C--EEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 3 7788889999999999999998 68999999986
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=2.7e-54 Score=441.56 Aligned_cols=362 Identities=27% Similarity=0.381 Sum_probs=290.8
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee-----cCCeEEEEEeC
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE-----TENRHYAHVDC 155 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-----~~~~~i~liDt 155 (482)
.+++.++|+++||+|+|||||+++|++.......+... .........+..++.+.+.....+. .....++||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 35678999999999999999999998632111000000 0000001111223333222111111 12378999999
Q ss_pred CCchhhHHHHHhhcccCCeEEEeecCCCCC-hHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 156 PGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 156 PG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
|||++|.+++..++..+|++|+|+|++++. ..|+++|+.++..++++++++|+||+|+.++++..+ ..+++.++++.+
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~-~~~~i~~~l~~~ 161 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALS-QYRQIKQFTKGT 161 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHH-HHHHHHHHHTTS
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHH-HHHHHHHHHHhh
Confidence 999999999999999999999999999997 899999999999999866999999999998654443 334777777765
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCC--------
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITG-------- 306 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g-------- 306 (482)
+. ..+|++++||++|. |+++|+++|.+.++.|.++.+.|++++|+++|.+.+
T Consensus 162 ~~--~~~~ii~vSA~~g~------------------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~ 221 (403)
T 3sjy_A 162 WA--ENVPIIPVSALHKI------------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNEL 221 (403)
T ss_dssp TT--TTCCEEECBTTTTB------------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSC
T ss_pred CC--CCCEEEEEECCCCc------------------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccC
Confidence 54 46899999999998 899999999998888888889999999999999877
Q ss_pred CceEEEEEEEeeeeecCCEEEEecCCcc----------ceeEEEEEeecccccceeecCCeEEEEEc---cccccCcccC
Q 011581 307 RGTVATGRVERGTIKVGETVDLVGLKET----------RNFTVTGVEMFQKTLDEAMAGDNVGLLLR---GVQKADIQRG 373 (482)
Q Consensus 307 ~G~v~~G~v~sG~l~~g~~v~i~p~~~~----------~~~~V~~i~~~~~~v~~a~aG~~v~l~l~---~~~~~~i~~G 373 (482)
+|+|++|+|.+|+|++||+|.+.|.+.. ...+|++|+.+++++++|.|||+|++.++ +++..++++|
T Consensus 222 ~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G 301 (403)
T 3sjy_A 222 KGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLG 301 (403)
T ss_dssp CCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSSCEEEEESSCHHHHGGGTTTT
T ss_pred cCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCCEEEEEeccccccchhhhccc
Confidence 8999999999999999999999986521 14799999999999999999999999987 6677899999
Q ss_pred eEEeCCCCCCC-CceEEEEEEEeecCCCCC----CCCCCCCCccEEEEeeeeeeeeEeeeeccccccccccCCCCEEEEE
Q 011581 374 MVLAKPGTITP-HTKFLAIVYVLKKEEGGR----HSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMV 448 (482)
Q Consensus 374 ~vl~~~~~~~~-~~~f~a~v~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~v~ 448 (482)
|||++++++++ ++.|+|++.||++.++++ ..+|..|+++++|+|+.++.|+|..+.. + .++
T Consensus 302 ~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~~~------------~--~~~ 367 (403)
T 3sjy_A 302 SIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKK------------D--EIE 367 (403)
T ss_dssp CEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEECS------------S--EEE
T ss_pred cEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEecC------------c--eEE
Confidence 99999988655 689999999999754433 4689999999999999999999999853 2 688
Q ss_pred EEeCceEeeccCC-eEEE-eeC---CcEEEEEEEe
Q 011581 449 VELIMPVACEQGM-RFAI-REG---GKTVGAGVIQ 478 (482)
Q Consensus 449 ~~~~~p~~~~~~~-rfil-r~~---~~tvg~G~v~ 478 (482)
++|.+|+|++.|+ ||+| |+. .+++|+|.|.
T Consensus 368 ~~l~~p~~~~~g~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 368 VELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EEEEEEEECCSSSCEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCcEeeccCCEEEEEEEEeCCcEEEEEEEEEE
Confidence 8999999999999 9998 643 3899999985
No 17
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.3e-39 Score=342.98 Aligned_cols=269 Identities=24% Similarity=0.379 Sum_probs=200.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH---hcCC---CCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA---SLGN---SAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~---~~g~---~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
..+||+|+||+|||||||+++|+.... ..|. +.......+|..+.|++||+||..+...++|+++.|+||||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 468999999999999999999985421 1111 2222335789999999999999999999999999999999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHhh--
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLQLVELEVRELLSS-- 233 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~i~~~i~~~l~~-- 233 (482)
|.||..++.++++.+|+||+||||.+|++.||+..|+++...++| .|+++||||+... .+..+ ++++.+..
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~~~~~~----~i~~~l~~~~ 184 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-VMTFVNKMDREALHPLDVMA----DIEQHLQIEC 184 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCCHHHHHH----HHHHHHTSEE
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCc-eEEEEecccchhcchhHhhh----hhhhhcCCce
Confidence 999999999999999999999999999999999999999999999 6789999999763 22333 33333210
Q ss_pred ---------------------------------------------------------------------cC--------C
Q 011581 234 ---------------------------------------------------------------------YE--------F 236 (482)
Q Consensus 234 ---------------------------------------------------------------------~~--------~ 236 (482)
.+ .
T Consensus 185 ~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~ 264 (548)
T 3vqt_A 185 APMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYL 264 (548)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred EeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHH
Confidence 00 0
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC---------CCCCCeeEEEEeEEee---
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR---------QTDLPFLLAVEDVFSI--- 304 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~---------~~~~~~~~~I~~v~~v--- 304 (482)
.+..+|++..||+++. |+..||+.+.+++|+|.. ..++||...|..++..
T Consensus 265 ~g~~~PV~~gSA~~~~------------------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~ 326 (548)
T 3vqt_A 265 KGELTPVFFGSAINNF------------------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDK 326 (548)
T ss_dssp TTSEEEEEECBGGGTB------------------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC---
T ss_pred hCCcceeeecccccCc------------------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCc
Confidence 1224678888888877 999999999999998853 3467898888777765
Q ss_pred CCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 305 TGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 305 ~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
+++|.+.++||.||+|+.||.|++...++ ..+|..+...+ .++++|.|||+|++. +..+++.||+||+.+
T Consensus 327 ~~~Grla~~RV~sG~l~~g~~v~~~~~~~--~~rv~~l~~~~g~~~~~v~~a~AGdIvai~----gl~~~~~GDTl~~~~ 400 (548)
T 3vqt_A 327 AHRDRMAFLRICSGTFTRGMRLKHHRTGK--DVTVANATIFMAQDRTGVEEAFPGDIIGIP----NHGTIKIGDTFTESK 400 (548)
T ss_dssp ----CEEEEEEEESCEETTCEEEETTTTE--EEECTTCEECCCSSCCSSCEECTTCEEEEE----CSSCCCTTCEEESSS
T ss_pred CCCCeEEEEEEecceecCCCEEEeecccc--ccccchhhhhccccccccCEEecCCEEEec----CCccCccCCEecCCC
Confidence 67899999999999999999999887664 67888877643 579999999999986 557899999999875
Q ss_pred C
Q 011581 381 T 381 (482)
Q Consensus 381 ~ 381 (482)
.
T Consensus 401 ~ 401 (548)
T 3vqt_A 401 E 401 (548)
T ss_dssp S
T ss_pred C
Confidence 4
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.8e-37 Score=327.58 Aligned_cols=268 Identities=25% Similarity=0.352 Sum_probs=203.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-----CeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-----NRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPG~ 158 (482)
..+||+++||+|+|||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. .+.++|||||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 468999999999999999999987533222111 13457788999999999998776655443 368899999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+|..++.++++.+|++|+|+|+++|...|+.+++..+...++| +|+|+||+|+.+.+ .+.+.+++.+ .+++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~--~~~v~~el~~---~lg~~- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSAD--VDRVKKQIEE---VLGLD- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHH---TSCCC-
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccC--HHHHHHHHHH---hhCCC-
Confidence 99999999999999999999999999999999999999999999 88999999998642 1222223333 33442
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEee
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 318 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG 318 (482)
..+++++||++|. |+.+|+++|.+.+|.|..+.+.||++.|.+++..++.|++++|+|.+|
T Consensus 157 -~~~vi~vSAktg~------------------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG 217 (600)
T 2ywe_A 157 -PEEAILASAKEGI------------------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDG 217 (600)
T ss_dssp -GGGCEECBTTTTB------------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred -cccEEEEEeecCC------------------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeC
Confidence 2468999999998 999999999999999988888999999999999999999999999999
Q ss_pred eeecCCEEEEecCCccceeEEEEEeecc---cccceeecCCeEEEEEccc-cccCcccCeEEeCCCC
Q 011581 319 TIKVGETVDLVGLKETRNFTVTGVEMFQ---KTLDEAMAGDNVGLLLRGV-QKADIQRGMVLAKPGT 381 (482)
Q Consensus 319 ~l~~g~~v~i~p~~~~~~~~V~~i~~~~---~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~ 381 (482)
++++||.|.+.+.+. ..+|+.|..++ .+++++.|||++.+. .|+ +..++++||+|++++.
T Consensus 218 ~l~~Gd~I~~~~~~~--~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GDtl~~~~~ 281 (600)
T 2ywe_A 218 EVKPGDKIMLMSTGK--EYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGDTITHAKN 281 (600)
T ss_dssp EECTTCEEEETTTTE--EEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTCEEEESSS
T ss_pred EEecCCEEEeccccc--eEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCCEEEeCCC
Confidence 999999999998764 66788877643 578999999977665 555 4578999999998654
No 19
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=9.1e-37 Score=322.97 Aligned_cols=268 Identities=23% Similarity=0.349 Sum_probs=199.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-----CeEEEEEeCCCc
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-----NRHYAHVDCPGH 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-----~~~i~liDtPG~ 158 (482)
..+||+++||+|+|||||+++|+.......... ...+.+|..+.|+++|+|+......+.+. ++.++|||||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-MEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCccccc-ccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 468999999999999999999987532222111 13457788999999999998877666553 378999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+|..++..+++.+|++|+|+|+++|...|+.+++..+...++| +|+|+||+|+.+.+ .+.+.+++.+. ++++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~--~~~v~~ei~~~---lg~~- 154 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD--PERVAEEIEDI---VGID- 154 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC--HHHHHHHHHHH---TCCC-
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc--HHHHHHHHHHH---hCCC-
Confidence 99999999999999999999999999999999999999999999 88999999998642 12222244433 3442
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEee
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 318 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG 318 (482)
..+++++||++|. |+.+|+++|.+.+|.|..+.+.|+++.|.+++..+++|++++|+|.+|
T Consensus 155 -~~~vi~vSAktg~------------------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG 215 (599)
T 3cb4_D 155 -ATDAVRCSAKTGV------------------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNG 215 (599)
T ss_dssp -CTTCEEECTTTCT------------------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEES
T ss_pred -cceEEEeecccCC------------------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeC
Confidence 2368999999998 999999999999999988888999999999999999999999999999
Q ss_pred eeecCCEEEEecCCccceeEEEEEeec---ccccceeecCCeEEEEEccc-cccCcccCeEEeCCCC
Q 011581 319 TIKVGETVDLVGLKETRNFTVTGVEMF---QKTLDEAMAGDNVGLLLRGV-QKADIQRGMVLAKPGT 381 (482)
Q Consensus 319 ~l~~g~~v~i~p~~~~~~~~V~~i~~~---~~~v~~a~aG~~v~l~l~~~-~~~~i~~G~vl~~~~~ 381 (482)
+|+.||.+.+.+.++ ..+|..|... ..+++++.|||++.+ +.++ +..++++||+|++.+.
T Consensus 216 ~l~~Gd~v~~~~~~~--~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GDtl~~~~~ 279 (599)
T 3cb4_D 216 TLRKGDKVKVMSTGQ--TYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGDTLTLARN 279 (599)
T ss_dssp CEESSCEEEETTTCC--EEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTCEEEESSS
T ss_pred EEecCCEEEeccccc--eeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCCEeeecCC
Confidence 999999999999875 5677777764 357899999996665 4455 3578999999998654
No 20
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=8.1e-37 Score=332.34 Aligned_cols=270 Identities=28% Similarity=0.400 Sum_probs=195.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH---hcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-------CeEEEEE
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA---SLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-------NRHYAHV 153 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-------~~~i~li 153 (482)
..+||+|+||+|||||||+++|+.... ..|... .....+|..+.|++||+||..+...+.|. ++.|+||
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~-~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVH-DGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceec-CCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 468999999999999999999986543 333321 22357899999999999999888877664 6889999
Q ss_pred eCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 154 DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 154 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
|||||.||..++.++++.+|+||+||||.+|++.||+..|+++...++| .|+|+||||+...+ ... +.+++++.+..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a~-~~~-~~~ei~~~l~~ 167 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGAN-FLR-VVEQIKKRLGH 167 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTCC-HHH-HHHHHHHHHCS
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCcc-HHH-HHHHhhhhccc
Confidence 9999999999999999999999999999999999999999999999999 78899999997532 111 11133332211
Q ss_pred c----------------------------------------------------------------------------C--
Q 011581 234 Y----------------------------------------------------------------------------E-- 235 (482)
Q Consensus 234 ~----------------------------------------------------------------------------~-- 235 (482)
. .
T Consensus 168 ~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~ 247 (709)
T 4fn5_A 168 TPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELS 247 (709)
T ss_dssp CEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCC
T ss_pred ceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCcc
Confidence 0 0
Q ss_pred ------------CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC---------------
Q 011581 236 ------------FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR--------------- 288 (482)
Q Consensus 236 ------------~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~--------------- 288 (482)
....-+|++..||+++. |+..||+.+.+++|+|..
T Consensus 248 ~~~~~~~l~~~~~~~~~~pv~~gsa~~~~------------------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~ 309 (709)
T 4fn5_A 248 EAEIKEGLRLRTLACEIVPAVCGSSFKNK------------------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVE 309 (709)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECBTTTTB------------------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSC
T ss_pred HHHHHHHHHHhhhhceeeeeeeeecccCC------------------chHHHHHHHHhhCCCCcccccccccCCcccccc
Confidence 00122445555555544 889999999999998842
Q ss_pred -----CCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEE
Q 011581 289 -----QTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVG 359 (482)
Q Consensus 289 -----~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~ 359 (482)
+.+.||.+.|.++...+++|.+.++||.||+|+.||+|++...++ ..+|..+... ..++++|.||++|+
T Consensus 310 ~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdIv~ 387 (709)
T 4fn5_A 310 DERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGK--KERVGRMVQMHANQREEIKEVRAGDIAA 387 (709)
T ss_dssp CEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCC--CCBCCCEECCCSSCCCEESEECTTCEEE
T ss_pred ccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCc--EEeecceeEeecceeeEeeeecCCCeee
Confidence 456899999999998999999999999999999999998776554 4567777654 35799999999998
Q ss_pred EEEccccccCcccCeEEeCCCC
Q 011581 360 LLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 360 l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
+. |+ .++.+||+|++.+.
T Consensus 388 i~--Gl--~~~~~gdTl~~~~~ 405 (709)
T 4fn5_A 388 LI--GM--KDVTTGDTLCSIEK 405 (709)
T ss_dssp EC--SC--SSCCTTCEEECSSS
T ss_pred ec--CC--CcCccCCEecCCCc
Confidence 75 44 57899999998654
No 21
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=6.1e-36 Score=313.46 Aligned_cols=268 Identities=26% Similarity=0.392 Sum_probs=214.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhc------CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASL------GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~------g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
..++|+++||+|+|||||+++|+...... ...........|..+.|+++|+|+......+++.+..++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 46899999999999999999997432111 111111223557778899999999999999999999999999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH--HHHHHHHHHHHHHHhhc-
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLQLVELEVRELLSSY- 234 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~--~~~~~i~~~i~~~l~~~- 234 (482)
|.+|...+..+++.+|++|+|+|++++...++..++..+...++| +++|+||+|+...+ +..+ ++++.+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~~~~l~----ei~~~l~~~~ 166 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPSIELLD----EIESILRIHC 166 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCHHHHHH----HHHHHHCCEE
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccccHHHHHH----HHHHhhCCCc
Confidence 999999999999999999999999999999999999999999999 88999999997532 2222 333222110
Q ss_pred ------------------------------------------------------------------------C------C
Q 011581 235 ------------------------------------------------------------------------E------F 236 (482)
Q Consensus 235 ------------------------------------------------------------------------~------~ 236 (482)
. .
T Consensus 167 ~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~ 246 (528)
T 3tr5_A 167 APVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYL 246 (528)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred eeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHh
Confidence 0 0
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCC---------CCCCeeEEEEeEEe--eC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ---------TDLPFLLAVEDVFS--IT 305 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~---------~~~~~~~~I~~v~~--v~ 305 (482)
.+..+|++++||++|. |+.+|++++.+++|+|... .+.||...|.++.. .+
T Consensus 247 ~~~~~PV~~gSA~~~~------------------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp 308 (528)
T 3tr5_A 247 KGELTPIFFGSAINNF------------------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDP 308 (528)
T ss_dssp TTSEEEEEECBGGGTB------------------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-
T ss_pred cCceeEEEeccccCCc------------------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCc
Confidence 1123589999999998 9999999999999988642 25789999877764 55
Q ss_pred -CCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 306 -GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 306 -g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
++|+++++||.+|+|+.||.|++.+.++ ..+|.++... +.++++|.|||+|++. +..+++.||+||+.+
T Consensus 309 ~~~g~l~~~RV~sG~l~~g~~v~~~~~~~--~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~----~l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 309 GHRDRIAFLRIASGQYQKGMKAYHVRLKK--EIQINNALTFMAGKRENAEEAWPGDIIGLH----NHGTIQIGDTFTQGE 382 (528)
T ss_dssp CCCCEEEEEEEEESCEETTEEEEETTTTE--EEEESSCBCCBTTCSSCCSEECTTCEEEEE----ESSSCCTTCEEESSC
T ss_pred cCCceEEEEEEecCeEcCCCEEEecCCCc--eEEEeeeEEEeCCCeeECCEECCCCEEEEc----CCCCCccCCEEcCCC
Confidence 8999999999999999999999988764 7789998763 4679999999999885 456789999999754
No 22
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=278.47 Aligned_cols=184 Identities=22% Similarity=0.379 Sum_probs=166.6
Q ss_pred CCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccC
Q 011581 290 TDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKAD 369 (482)
Q Consensus 290 ~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~ 369 (482)
.++||+|+|+++|+ |.|+|++|+|++|.|++||.|.++|.+. .++|++|+.+++++++|.|||+|+|+|+|++..+
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~--~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~d 78 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKH--NVEVLGILSDDVETDTVAPGENLKIRLKGIEEEE 78 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTE--EEEEEEECSSSSCBSEECTTSEEEEEEEESSSSC
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCC--EEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHH
Confidence 46899999999998 8999999999999999999999999864 8999999999999999999999999999999999
Q ss_pred cccCeEEeCCCCC-CCCceEEEEEEEeecCCCCCCCCCCCCCccEEEEeeeeeeeeEeeeeccccc--------cccccC
Q 011581 370 IQRGMVLAKPGTI-TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE--------ESKMVM 440 (482)
Q Consensus 370 i~~G~vl~~~~~~-~~~~~f~a~v~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~i~~~~~~--------~~~~~~ 440 (482)
+++||+|++++++ ..++.|+|++.||+++ .+|..||++++|+|+.+++|+|.+|..+.|. ++++++
T Consensus 79 i~rG~vl~~~~~~~~~~~~f~a~v~~l~~~-----~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~ 153 (204)
T 3e1y_E 79 ILPGFILCDPNNLCHSGRTFDAQIVIIEHK-----SIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVK 153 (204)
T ss_dssp CCTTCEEBCSSSCCCCCSEEEEEEECCSCC-----SCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCC
T ss_pred CccceEEECCCCCCchhEEEEEEEEEeCCC-----CccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcC
Confidence 9999999998875 5689999999999975 4799999999999999999999998765432 357899
Q ss_pred CCCEEEEEEEeCceEeeccC------CeEEEeeCCcEEEEEEEeeecC
Q 011581 441 PGDRIKMVVELIMPVACEQG------MRFAIREGGKTVGAGVIQSIIE 482 (482)
Q Consensus 441 ~g~~~~v~~~~~~p~~~~~~------~rfilr~~~~tvg~G~v~~v~~ 482 (482)
+||.+.|+|++.+|+|++.+ +||+|||.|+|+|+|+|+++.+
T Consensus 154 ~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~ 201 (204)
T 3e1y_E 154 QDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVP 201 (204)
T ss_dssp TTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC
T ss_pred CCCEEEEEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEec
Confidence 99999999999999999987 8999999999999999999864
No 23
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-38 Score=342.56 Aligned_cols=265 Identities=27% Similarity=0.373 Sum_probs=214.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCC--CCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNS--APKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
.+||+|+||+|||||||+++|+.....+.+. .......+|..+.|++||+|+..+...++|+++.|+|||||||.||.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 5799999999999999999999765543321 12234578999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH--HHHHHHHHHHHHHHhh-------
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE--ELLQLVELEVRELLSS------- 233 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~--~~~~~i~~~i~~~l~~------- 233 (482)
.++.++++.+|+||+||||.+|++.||+.+|+++..+++| .|+++||||+...+ ...+ ++++.+..
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~~~~~----~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP-TIFFINKIDQNGIDLSTVYQ----DIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCS-CEECCEECCSSSCCSHHHHH----HHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-eEEEEeccccccCCHHHHHH----HHHHHhCCCccccce
Confidence 9999999999999999999999999999999999999999 56889999987632 2222 22221110
Q ss_pred -----------------------------------cCC--------------CCCCccEEEcchhhhHHHhhcCCCcccC
Q 011581 234 -----------------------------------YEF--------------PGDDVPIISGSALLALEALMANPSIKRG 264 (482)
Q Consensus 234 -----------------------------------~~~--------------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~ 264 (482)
..+ ...-+|++..||+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~------------ 224 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI------------ 224 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC------------
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC------------
Confidence 000 0123567777777766
Q ss_pred cchhhhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEee
Q 011581 265 ENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEM 344 (482)
Q Consensus 265 ~~~w~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~ 344 (482)
|++.||+.+.+++|+|..+.+.||.+.|.+++..+++|.+.++||.+|+|+.||.|++...+ ..+|..+..
T Consensus 225 ------Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~---~~~v~~l~~ 295 (638)
T 3j25_A 225 ------GIDNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKE---KIKVTEMYT 295 (638)
T ss_dssp ------SHHHHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCC---CSSBCCCCS
T ss_pred ------CchhHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCc---ceeEEeeec
Confidence 99999999999999998888899999999999899999999999999999999999776544 345666654
Q ss_pred c----ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 345 F----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 345 ~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
. ..++++|.|||+|++. + ..++.|+++++..
T Consensus 296 ~~g~~~~~v~~a~aGdIv~i~--g---~~~~~~~tl~d~~ 330 (638)
T 3j25_A 296 SINGELCKIDRAYSGEIVILQ--N---EFLKLNSVLGDTK 330 (638)
T ss_dssp SCCCCBSCCCTTBCCCCSCCC--S---SSCSSEECSSSSS
T ss_pred ccccccccccccccceEEEEe--c---cccccCceecCCC
Confidence 3 3568999999998763 2 4677888888764
No 24
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.2e-35 Score=309.62 Aligned_cols=271 Identities=23% Similarity=0.354 Sum_probs=195.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhc---CCCC---CcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASL---GNSA---PKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 157 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---g~~~---~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG 157 (482)
..++|+++||+|+|||||+++|+...... |... ......+|..+.|+.+|+|+......+++.+..++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999998642211 1100 11133567788999999999999889999999999999999
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC--
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE-- 235 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~-- 235 (482)
|.+|...+.++++.+|++|+|+|+.++...++.+++..+...++| +++|+||+|+...+. . .+.+++++.+....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~-~~~~~i~~~l~~~~~~ 168 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-M-ELLDEVENELKIGCAP 168 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-H-HHHHHHHHHHCCEEEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-H-HHHHHHHHHhCCCccc
Confidence 999999999999999999999999999999999999999989999 889999999986321 1 11223333332100
Q ss_pred ------------------------C------------------------------------------------------C
Q 011581 236 ------------------------F------------------------------------------------------P 237 (482)
Q Consensus 236 ------------------------~------------------------------------------------------~ 237 (482)
| .
T Consensus 169 ~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 248 (529)
T 2h5e_A 169 ITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLA 248 (529)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHh
Confidence 0 0
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCC---------CCCCeeEEEEeEEe---eC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ---------TDLPFLLAVEDVFS---IT 305 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~---------~~~~~~~~I~~v~~---v~ 305 (482)
+..+|++++||+++. |+.+||+.|.+++|+|... .+.||.+.|.++.. .+
T Consensus 249 ~~~~Pv~~gSA~~~~------------------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~ 310 (529)
T 2h5e_A 249 GEITPVFFGTALGNF------------------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPK 310 (529)
T ss_dssp TSEEEEEECBTTTTB------------------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSS
T ss_pred CceeEEEeeecccCC------------------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcC
Confidence 112355556665555 8999999999999988542 14688877555432 24
Q ss_pred CCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 306 GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 306 g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
++|++++|||.||+|+.||.|++.+.++ ..+|.+|+.+ +.++++|.|||+|++. ...+++.||+||+++.
T Consensus 311 ~~G~i~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~----~l~~~~~Gdtl~~~~~ 384 (529)
T 2h5e_A 311 HRDRVAFMRVVSGKYEKGMKLRQVRTAK--DVVISDALTFMAGDRSHVEEAYPGDILGLH----NHGTIQIGDTFTQGEM 384 (529)
T ss_dssp SSCCCEEEEEEESCEETTCEEEETTTTE--EEECSCEECCCC-----CCEECTTCEEEEC----CSSCCCTTCEEESSCC
T ss_pred CCceEEEEEEecCeEcCCCEEEEeeCCC--EEEeceeeEEeCCCceEcceECCCCEEEEe----ccCCCccCCEeecCCc
Confidence 5899999999999999999999998765 7899999875 5689999999999885 4567899999998653
No 25
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.8e-34 Score=311.09 Aligned_cols=271 Identities=25% Similarity=0.360 Sum_probs=216.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-------eEEEE
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-------RHYAH 152 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-------~~i~l 152 (482)
...+||+++||+|+|||||+++|+..... .|.. ......+|..+.|+++|+|+......+.+.+ +.++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v-~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEV-HDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccccc-CCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 35689999999999999999999864221 1111 1123567888999999999998887777776 89999
Q ss_pred EeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 153 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 153 iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
||||||.+|..++.++++.+|++|+|+|++++...|+.++++.+...++| +++|+||+|+...+ .+.+.+++++.+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQIKTRLG 163 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999 78899999997632 1122223443332
Q ss_pred hcC--------------------------C--------------------------------------------------
Q 011581 233 SYE--------------------------F-------------------------------------------------- 236 (482)
Q Consensus 233 ~~~--------------------------~-------------------------------------------------- 236 (482)
... |
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 110 0
Q ss_pred --------------CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC--------------
Q 011581 237 --------------PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR-------------- 288 (482)
Q Consensus 237 --------------~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~-------------- 288 (482)
....+|++.+||+++. |+..||+.+..++|+|..
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~------------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~ 305 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKNK------------------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDT 305 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccCc------------------cHHHHHHHHHHHCCChhhcccccccCCccccc
Confidence 0012466666666665 899999999999998854
Q ss_pred ------CCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeE
Q 011581 289 ------QTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNV 358 (482)
Q Consensus 289 ------~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v 358 (482)
+.+.||.+.|.+++..+++|++++|||.+|+|+.||.|++.+.++ ..+|.+|... ..++++|.|||++
T Consensus 306 ~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdIv 383 (704)
T 2rdo_7 306 PAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAA--RERFGRIVQMHANKREEIKEVRAGDIA 383 (704)
T ss_pred ccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCc--EEEeceEEEEeCCCceEcceeCCCCEE
Confidence 146799999999999999999999999999999999999887654 6788888764 4679999999999
Q ss_pred EEEEccccccCcccCeEEeCCCC
Q 011581 359 GLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 359 ~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
++. |+ .++++||+|++.+.
T Consensus 384 ~i~--gl--~~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 384 AAI--GL--KDVTTGDTLCDPDA 402 (704)
T ss_pred EEe--Cc--ccCccCCEEeCCCc
Confidence 996 43 56899999998653
No 26
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3.6e-33 Score=302.06 Aligned_cols=271 Identities=27% Similarity=0.359 Sum_probs=201.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhc---CCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASL---GNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~---g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
...++|+++||+|+|||||+++|+...... |.. ......+|..+.|+++|+|+......+.+.+..++|||||||.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v-~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCccccee-cCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 346899999999999999999998643211 110 1123467888899999999999888888899999999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc-----
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY----- 234 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~----- 234 (482)
+|...+..+++.+|++|+|+|++++...++.+++..+...++| +++|+||+|+...+ .+.+.+++++.+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~--~~~~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD--LWLVIRTMQERLGARPVVMQ 165 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--HHHHHHHHHHTTCCCEEECE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccCC--HHHHHHHHHHHhCCCcccee
Confidence 9999999999999999999999999999999999999999999 78899999997632 111222333333210
Q ss_pred ----------------------------------------------------------------------C---------
Q 011581 235 ----------------------------------------------------------------------E--------- 235 (482)
Q Consensus 235 ----------------------------------------------------------------------~--------- 235 (482)
.
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 0
Q ss_pred -----CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC------------------CCCC
Q 011581 236 -----FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR------------------QTDL 292 (482)
Q Consensus 236 -----~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~------------------~~~~ 292 (482)
.....+|++++||++|. |++.||+.+.+++|+|.. +.+.
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~------------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 307 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNK------------------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNG 307 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTB------------------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTS
T ss_pred HHHHHHhCcEeEEEEeecccCc------------------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCC
Confidence 00112678888888876 899999999999998864 2567
Q ss_pred CeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEcccccc
Q 011581 293 PFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKA 368 (482)
Q Consensus 293 ~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~ 368 (482)
||.+.|.+++..+++|++++|||.+|+|+.||.|++...++ ..+|..|... ..++++|.|||++++. |+ .
T Consensus 308 p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~ 381 (691)
T 1dar_A 308 PLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGR--KERVARLLRMHANHREEVEELKAGDLGAVV--GL--K 381 (691)
T ss_dssp CCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTE--EEECCEEEEECSSCEEEESEEETTCEEEEE--CC--S
T ss_pred CcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCc--EEEEceEEEEeCCCceEcceecCCCEEEEe--Cc--c
Confidence 99999999999999999999999999999999999877653 5678887764 3579999999999997 44 5
Q ss_pred CcccCeEEeCCCC
Q 011581 369 DIQRGMVLAKPGT 381 (482)
Q Consensus 369 ~i~~G~vl~~~~~ 381 (482)
+++.||+|++.+.
T Consensus 382 ~~~~Gdtl~~~~~ 394 (691)
T 1dar_A 382 ETITGDTLVGEDA 394 (691)
T ss_dssp SCCTTCEEEETTC
T ss_pred cCccCCEEecCCC
Confidence 6789999997654
No 27
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.2e-33 Score=299.83 Aligned_cols=271 Identities=25% Similarity=0.358 Sum_probs=202.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCC--CCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNS--APKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~--~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
...++|+++||+|+|||||+++|+......... .......+|..+.|+++|+|+......+.+.+..++|||||||.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 346899999999999999999999653322110 001124568888899999999998888888999999999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC-----
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE----- 235 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~----- 235 (482)
|...+..+++.+|++|+|+|+.++...++...+..+...++| +++|+||+|+...+ . ..+.+++++.+....
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-~-~~~~~~l~~~l~~~~~~~~i 164 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-F-EYSVSTLHDRLQANAAPIQL 164 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-H-HHHHHHHHHHHCCCEEESEE
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCC-EEEEEECCCccccc-h-HHHHHHHHHHhCCCceeEEe
Confidence 999999999999999999999999999999999999999999 78999999998632 1 112224444432110
Q ss_pred ---------------------CC---------------------------------------------------------
Q 011581 236 ---------------------FP--------------------------------------------------------- 237 (482)
Q Consensus 236 ---------------------~~--------------------------------------------------------- 237 (482)
|+
T Consensus 165 pisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l 244 (693)
T 2xex_A 165 PIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAI 244 (693)
T ss_dssp EECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHH
Confidence 00
Q ss_pred ------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCC--------------------CCC
Q 011581 238 ------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR--------------------QTD 291 (482)
Q Consensus 238 ------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~--------------------~~~ 291 (482)
..-+|++.+||+++. |+..||+.+.+++|+|.. +.+
T Consensus 245 ~~~~~~~~~~Pv~~gSA~~~~------------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (693)
T 2xex_A 245 RQATTNVEFYPVLCGTAFKNK------------------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDS 306 (693)
T ss_dssp HHHHHTTSCEEEEECBTTTTB------------------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTT
T ss_pred HHHHHhCCeeeEEEeecccCc------------------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCC
Confidence 011466666776665 899999999999998854 256
Q ss_pred CCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecc----cccceeecCCeEEEEEccccc
Q 011581 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQK 367 (482)
Q Consensus 292 ~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~ 367 (482)
.||.+.|.+++..+++|.+.+|||.+|+|+.||.|++...++ ..+|..|...+ .++++|.|||++++. | .
T Consensus 307 ~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~--~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g--l 380 (693)
T 2xex_A 307 AEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGK--RERVGRLLQMHANSRQEIDTVYSGDIAAAV--G--L 380 (693)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTE--EEEECCEEEECSSCEEECSEEETTCEEEEE--S--C
T ss_pred CceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCc--eEEeceEEEEeCCCceEccccCcCCEEEEe--C--c
Confidence 799999999999999999999999999999999999876553 67888887653 579999999999997 4 4
Q ss_pred cCcccCeEEeCCC
Q 011581 368 ADIQRGMVLAKPG 380 (482)
Q Consensus 368 ~~i~~G~vl~~~~ 380 (482)
.+++.||+|++.+
T Consensus 381 ~~~~~GdTl~~~~ 393 (693)
T 2xex_A 381 KDTGTGDTLCGEK 393 (693)
T ss_dssp SSCCTTCEEEETT
T ss_pred ccCccCCEEecCC
Confidence 5688999999865
No 28
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5.6e-33 Score=299.64 Aligned_cols=268 Identities=24% Similarity=0.300 Sum_probs=216.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
....+|+++||+|+|||||+++|++.... .|.. .......|..+.|+.+|+|+......+.+.+..++|||||||.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 35679999999999999999999965332 1211 1123456778889999999988888888889999999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh-------
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS------- 232 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~------- 232 (482)
+|...+..+++.+|++++|+|+.+|...++++++..+...++| +++|+||+|+. .. ...+.+++.+.+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~--~~~~~~~l~~~l~~~~~~~~ 161 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-GD--YYALLEDLRSTLGPILPIDL 161 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC--HHHHHHHHHHHHCSEEECEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-hh--HHHHHHHHHHHhCCcceEEe
Confidence 9999999999999999999999999999999999999999999 77899999987 21 1111123333222
Q ss_pred ----------------------------------------------------------------hcCC------------
Q 011581 233 ----------------------------------------------------------------SYEF------------ 236 (482)
Q Consensus 233 ----------------------------------------------------------------~~~~------------ 236 (482)
...+
T Consensus 162 Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~ 241 (665)
T 2dy1_A 162 PLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEA 241 (665)
T ss_dssp EEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred eecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 0000
Q ss_pred --CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCCCC-CCCCeeEEEEeEEeeCCCceEEEE
Q 011581 237 --PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQ-TDLPFLLAVEDVFSITGRGTVATG 313 (482)
Q Consensus 237 --~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~~~-~~~~~~~~I~~v~~v~g~G~v~~G 313 (482)
....+|++++||++|. |+++|+++|.+++|+|... .+.||.+.|.+++..+++|++++|
T Consensus 242 ~~~~~~~pv~~~SA~~~~------------------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~ 303 (665)
T 2dy1_A 242 VRRGLLYPVALASGEREI------------------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYL 303 (665)
T ss_dssp HHTTSCEEEEECBTTTTB------------------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEE
T ss_pred HHhCCeeEEEEeecccCc------------------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEE
Confidence 0112688889998887 8999999999999988643 678999999999999999999999
Q ss_pred EEEeeeeecCCEEEEecCCccceeEEEEEeec----ccccceeecCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 314 RVERGTIKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 314 ~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
||.+|+|+.||.|++.+ ...+|.+|... ..++++|.|||+|++. + ..++++||+|++.+.
T Consensus 304 rV~sG~l~~g~~v~~~~----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~--g--l~~~~~Gdtl~~~~~ 367 (665)
T 2dy1_A 304 RLYRGRLKPGDSLQSEA----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVP--K--AEGLHRGMVLWQGEK 367 (665)
T ss_dssp EEEESEECTTEEEBCTT----SCEEESSEEEEETTEEEEESCEETTCEEEES--S--CTTCCTTCEEESSSC
T ss_pred EEcccEEecCCEEEcCC----CeEEEeEEEEEeCCCeeECCEECCCCEEEEe--C--CccCccCCEEecCCC
Confidence 99999999999998766 25789888764 3579999999999985 3 357899999998654
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=7.9e-33 Score=293.20 Aligned_cols=259 Identities=25% Similarity=0.276 Sum_probs=194.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee------------------c
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE------------------T 145 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~------------------~ 145 (482)
..++|+++||+|+|||||+++|++...... ..+|+|.+.....+. .
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~----------------e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR----------------EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc----------------cCCceecccCeEEEeechhhhhcccccccccccc
Confidence 457999999999999999999987532111 012344333222221 1
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh---------
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--------- 216 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~--------- 216 (482)
....++|||||||++|...+.++++.+|++|+|+|+++|+.+||.+++..+...++| +++|+||||+...
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~ 146 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPF 146 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCch
Confidence 223699999999999998888889999999999999999999999999999999999 8999999999641
Q ss_pred --------HH---HHHHHHHHHHHHHhhcCCC----------CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHH
Q 011581 217 --------EE---LLQLVELEVRELLSSYEFP----------GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYEL 275 (482)
Q Consensus 217 --------~~---~~~~i~~~i~~~l~~~~~~----------~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~L 275 (482)
+. .+.....++.+.+...++. ...+|++++||++|. |+.+|
T Consensus 147 ~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~------------------GI~eL 208 (594)
T 1g7s_A 147 METFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE------------------GIPEL 208 (594)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT------------------THHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC------------------CchhH
Confidence 11 1111122344444444432 245799999999998 89999
Q ss_pred HHHhhhcCCCCC-----CCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeec-----
Q 011581 276 MDSVDSYIPIPQ-----RQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF----- 345 (482)
Q Consensus 276 l~~l~~~l~~~~-----~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~----- 345 (482)
+++|...++.+. .+.+.|+++.|.+++..+|.|++++|+|.+|+|++||.|.+++.+....++|++|...
T Consensus 209 l~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~e 288 (594)
T 1g7s_A 209 LTMLMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEE 288 (594)
T ss_dssp HHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC-
T ss_pred HHHHHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEEeccccch
Confidence 999887554221 2457899999999999999999999999999999999999998764345699999764
Q ss_pred -------ccccceee--cCCeEEEEEccccccCcccCeEEeCCCC
Q 011581 346 -------QKTLDEAM--AGDNVGLLLRGVQKADIQRGMVLAKPGT 381 (482)
Q Consensus 346 -------~~~v~~a~--aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 381 (482)
..++++|. +|+.+++ . +..++..||+|+..++
T Consensus 289 lr~~~~~~~~v~ea~~~aG~~v~~--~--~l~~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 289 MRESRKKFQKVDEVVAAAGIKIVA--P--GIDDVMAGSPLRVVTD 329 (594)
T ss_dssp ---CCCSEEECSEEESSEEEEEEC--S--SCTTBCTTCEEEECSS
T ss_pred hhhccCCceEccEEcCCCCcEEEE--c--ccCCCCCCCEEEecCC
Confidence 34678888 6776664 2 3456789999987643
No 30
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=6.3e-35 Score=304.48 Aligned_cols=255 Identities=27% Similarity=0.302 Sum_probs=200.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~ 162 (482)
..++|+++||+|+|||||+++|++..... ....|+|.+.....+.+ .+..++|||||||++|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~----------------~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA----------------MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH----------------SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc----------------ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 35689999999999999999998753322 23457777776666665 46689999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ 242 (482)
.++..++..+|++|||+|++++..+|+.+++..+...++| +|+|+||+|+.+... +.+..++.++-.........++
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~--~~v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKAEADP--EKVKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSC--CSSSSHHHHTTSCCCCSSSSEE
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccccccch--HHHHHHHHhhhhhHHhcCCCce
Confidence 9999999999999999999999999999999999999999 899999999975321 0011122221111111123579
Q ss_pred EEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC--CCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeee
Q 011581 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP--IPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTI 320 (482)
Q Consensus 243 ~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~--~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l 320 (482)
++++||++|. |+++|++.|...++ .+..+.+.|++++|.++|.++|+|+|++|+|.+|+|
T Consensus 144 iv~vSAktG~------------------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l 205 (537)
T 3izy_P 144 AVHVSALTGE------------------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTL 205 (537)
T ss_dssp ECCCCSSSSC------------------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECC
T ss_pred EEEEECCCCC------------------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEE
Confidence 9999999998 88888888877543 344456789999999999999999999999999999
Q ss_pred ecCCEEEEecCCccceeEEEEEeecc-cccceeecCCeEEEEEccccccCcccCeEEeCCCCC
Q 011581 321 KVGETVDLVGLKETRNFTVTGVEMFQ-KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI 382 (482)
Q Consensus 321 ~~g~~v~i~p~~~~~~~~V~~i~~~~-~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 382 (482)
++||.+..+ . ...+|++|+.++ .++++|.||++|++. |++ ....+||+|+..++.
T Consensus 206 ~~Gd~v~~g---~-~~~kVr~i~~~~g~~v~~A~~G~~V~i~--g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 206 RKGSILVAG---K-SWAKVRLMFDENGRAVNEAYPSMPVGII--GWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp SSEEEECCS---S-CCEEEEEEEECCCCCSCCSCCSTTCCCC--SSE-EEEEEESSCCSCCSS
T ss_pred EcCCEEEeC---C-ceEEEEEEEcCCCCCCcEEcCCCEEEEE--CCC-CCCCCCCEEEecCCh
Confidence 999988422 1 257999999886 789999999999885 554 335899999987654
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=7.8e-34 Score=293.89 Aligned_cols=249 Identities=31% Similarity=0.311 Sum_probs=199.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++||+|+|||||+++|++..... ...+|+|++.....+++++..++|||||||++|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~----------------~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS----------------GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB----------------TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc----------------ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 45789999999999999999998653211 12468888888777888888999999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC----CC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP----GD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~----~~ 239 (482)
++.+++..+|++|||+|+++|..+||.+++..+...++| +|+++||+|+.+++. + ++.+.+...++. +.
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~--~----~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADP--D----RVKNELSQYGILPEEWGG 139 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCC--C----CTTCCCCCCCCCTTCCSS
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEeccccccCH--H----HHHHHHHHhhhhHHHhCC
Confidence 999999999999999999999999999999999999999 899999999975311 0 111112221211 12
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC--CCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEe
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI--PIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 317 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l--~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~s 317 (482)
.+|++++||++|. |+++|+++|.... ..+....+.|+.++|.++|.++|+|++++|+|.+
T Consensus 140 ~~~~v~vSAktG~------------------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~ 201 (501)
T 1zo1_I 140 ESQFVHVSAKAGT------------------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVRE 201 (501)
T ss_dssp SCEEEECCTTTCT------------------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEE
T ss_pred CccEEEEeeeecc------------------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEe
Confidence 4799999999998 8889999987632 2233445778999999999999999999999999
Q ss_pred eeeecCCEEEEecCCccceeEEEEEeec-ccccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 318 GTIKVGETVDLVGLKETRNFTVTGVEMF-QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 318 G~l~~g~~v~i~p~~~~~~~~V~~i~~~-~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
|++++||.+.+.+. ..+|++|+.. +..+++|.||+.|.+. |++ .....|++++...
T Consensus 202 Gtlk~Gd~v~~g~~----~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~-~~~~~Gd~~~~~~ 258 (501)
T 1zo1_I 202 GTLHKGDIVLCGFE----YGRVRAMRNELGQEVLEAGPSIPVEIL--GLS-GVPAAGDEVTVVR 258 (501)
T ss_dssp SBCCTTCEEEEEBS----SCEEEEECCTTTTSEEEECCSSCSSSE--EEC-SCCCTTEEEEEEC
T ss_pred eEEecCCEEEEccc----eeEEEEEEecCCCcCcEeccCCcEEEe--CCC-CCCCCCCEEEecC
Confidence 99999999987653 5699999864 5789999999999875 333 2247899987543
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.97 E-value=3.4e-30 Score=284.22 Aligned_cols=300 Identities=25% Similarity=0.396 Sum_probs=202.7
Q ss_pred hhhhccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC----------
Q 011581 77 GKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE---------- 146 (482)
Q Consensus 77 ~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---------- 146 (482)
..+......+||+++||+|+|||||+++|+................+|..++|+++|+|+......+.+.
T Consensus 11 ~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~ 90 (842)
T 1n0u_A 11 SLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK 90 (842)
T ss_dssp HHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCS
T ss_pred HHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccc
Confidence 3344445678999999999999999999997643322211222356788899999999998766555443
Q ss_pred ------CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-----
Q 011581 147 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD----- 215 (482)
Q Consensus 147 ------~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~----- 215 (482)
+..++|||||||.+|...+..+++.+|++|+|+|+.+|...|+..+|..+...++| +++|+||+|+..
T Consensus 91 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p-~ilviNK~D~~~~e~~~ 169 (842)
T 1n0u_A 91 QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRALLELQV 169 (842)
T ss_dssp SCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHHHTSCC
T ss_pred ccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-eEEEEECCCcchhhhcc
Confidence 67899999999999999999999999999999999999999999999998888999 789999999862
Q ss_pred -hHHH---HHHHHHHHHHHHhhc-----C---CCCCCccEEEcchhhhHHH-------------------hhc----C--
Q 011581 216 -DEEL---LQLVELEVRELLSSY-----E---FPGDDVPIISGSALLALEA-------------------LMA----N-- 258 (482)
Q Consensus 216 -~~~~---~~~i~~~i~~~l~~~-----~---~~~~~~~~i~~Sa~~g~~~-------------------~~~----~-- 258 (482)
+++. ++.+.++++..+..+ + +.+...++...|+++|+.. +.. +
T Consensus 170 ~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~ 249 (842)
T 1n0u_A 170 SKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSF 249 (842)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhcccc
Confidence 2332 233333555555321 1 3222345777888766320 000 0
Q ss_pred --C--------Cccc-Cc---------------------------------------------------------chhhh
Q 011581 259 --P--------SIKR-GE---------------------------------------------------------NQWVD 270 (482)
Q Consensus 259 --~--------~~~~-~~---------------------------------------------------------~~w~~ 270 (482)
+ .+.. +. ..|.-
T Consensus 250 ~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~p 329 (842)
T 1n0u_A 250 FNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLP 329 (842)
T ss_dssp EETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSB
T ss_pred ccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccc
Confidence 0 0000 00 00111
Q ss_pred hHHHHHHHhhhcCCCCCC-------------------------CCCCCeeEEEEeEEeeCCCce-EEEEEEEeeeeecCC
Q 011581 271 KIYELMDSVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTIKVGE 324 (482)
Q Consensus 271 gi~~Ll~~l~~~l~~~~~-------------------------~~~~~~~~~I~~v~~v~g~G~-v~~G~v~sG~l~~g~ 324 (482)
-+..||+.+.+++|+|.. +.+.||.+.|.+++..+++|. +.++||.||+|+.||
T Consensus 330 v~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~ 409 (842)
T 1n0u_A 330 AADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQ 409 (842)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTC
T ss_pred hHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCC
Confidence 147899999999998841 456899999999998899995 999999999999999
Q ss_pred EEEEecCC----ccc---eeEEEEEeecc----cccceeecCCeEEEEEccccccCcccCeEEeCCC
Q 011581 325 TVDLVGLK----ETR---NFTVTGVEMFQ----KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380 (482)
Q Consensus 325 ~v~i~p~~----~~~---~~~V~~i~~~~----~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 380 (482)
.|++.+.+ ... ..+|..|...+ .++++|.|||+|++. |++...+..| +||+.+
T Consensus 410 ~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~--gl~~~~~~t~-Tl~~~~ 473 (842)
T 1n0u_A 410 KVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLV--GIDQFLLKTG-TLTTSE 473 (842)
T ss_dssp EEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEE--SCTTTCCSSE-EEESCT
T ss_pred EEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEE--ccccceecce-eecCCC
Confidence 99887432 112 46788887653 579999999999886 4433333445 998754
No 33
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=5.7e-21 Score=178.35 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=121.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee-cCCeEEEEEeCCCc---
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGH--- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-~~~~~i~liDtPG~--- 158 (482)
...++|+++|+.|+|||||+|+|++... ........|.|.+.....+. ..+..+.||||||+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKR--------------LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSS--------------SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCc--------------ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 3568999999999999999999975310 01122334556665555555 56688999999995
Q ss_pred -------hhh---HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 159 -------ADY---VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 159 -------~~~---~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
+.| ....+.....+|++++|+|+.++......+.+..+...++| +++|+||+|+.+..+..+.. .++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~-~~~~ 170 (223)
T 4dhe_A 93 EVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINAL-RATQ 170 (223)
T ss_dssp CCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHH-HHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHH-HHHH
Confidence 233 33444445568999999999999888888888888888898 88999999998855433322 2444
Q ss_pred HHHhhc---CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCCC
Q 011581 229 ELLSSY---EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQ 287 (482)
Q Consensus 229 ~~l~~~---~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~~ 287 (482)
+.+..+ +. ....+++++||++|. |+.+|++.|.+.++.+.
T Consensus 171 ~~l~~~~~~~~-~~~~~~~~~SA~~g~------------------gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 171 KSLDAYRDAGY-AGKLTVQLFSALKRT------------------GLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHHHTC-CSCEEEEEEBTTTTB------------------SHHHHHHHHHHHHC---
T ss_pred HHHHhhhhccc-CCCCeEEEeecCCCc------------------CHHHHHHHHHHhcCccC
Confidence 444432 10 135789999999998 89999999998876543
No 34
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=2.8e-20 Score=181.89 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=116.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh---
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 160 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~--- 160 (482)
...+|+++|++|+|||||+|+|++..... .....+.|.+.....+..++..+.||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i---------------vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP---------------ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC---------------CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee---------------ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 34679999999999999999998642111 011223344433334556788999999999876
Q ss_pred -----hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 161 -----YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 161 -----~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
|......++..+|++++|+|++++....+...+..+... ++| +++|+||+|+.+.+.. +...++++
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~~~~~~--- 143 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDAAKYPEE---AMKAYHEL--- 143 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGGCSSHHH---HHHHHHHT---
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECcccCCchHH---HHHHHHHh---
Confidence 667777888999999999999998888887777777776 888 8899999999874431 11122222
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+ ..+++++||++|. |+.+|++.|...++
T Consensus 144 ~~----~~~~~~iSA~~g~------------------gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 144 LP----EAEPRMLSALDER------------------QVAELKADLLALMP 172 (301)
T ss_dssp ST----TSEEEECCTTCHH------------------HHHHHHHHHHTTCC
T ss_pred cC----cCcEEEEeCCCCC------------------CHHHHHHHHHHhcc
Confidence 12 3579999999998 88999999988764
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=9.8e-21 Score=169.91 Aligned_cols=160 Identities=31% Similarity=0.411 Sum_probs=119.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|.+|+|||||+++|++... ......+++.+.....+..++..+.||||||+++|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV----------------TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS----------------SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc----------------ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 4568999999999999999999985311 111123344444445566678889999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC----
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG---- 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~---- 238 (482)
.....++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+... + ++.+.++......
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDKPEANP--D----RVMQELMEYNLVPEEWG 142 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCH--H----HHHHHHTTTTCCBTTTT
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCH--H----HHHHHHHhcCcChhHcC
Confidence 7777788899999999999999888998888888777898 889999999986321 1 1222222222111
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++++++||++|. |+.++++.|.+.+
T Consensus 143 ~~~~~~~~Sa~~~~------------------gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 143 GDTIFCKLSAKTKE------------------GLDHLLEMILLVS 169 (178)
T ss_dssp SSEEEEECCSSSSH------------------HHHHHHHHHHHHH
T ss_pred CcccEEEEecCCCC------------------CHHHHHHHHHHhh
Confidence 13689999999998 8888888887644
No 36
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=2.6e-20 Score=183.04 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=122.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchh-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHAD- 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~- 160 (482)
.+.-.|+++|++|+|||||+|+|++.... ......+.|.+.....+..+ +..++||||||+.+
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~---------------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS---------------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcc---------------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcc
Confidence 34568999999999999999999864211 11234456666666666677 89999999999843
Q ss_pred ---------hHHHHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHHcCCCcEEEEEecCCCC-ChHHHHHHHHHHHHH
Q 011581 161 ---------YVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQVGVPNMVVFLNKQDQV-DDEELLQLVELEVRE 229 (482)
Q Consensus 161 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~~~ip~iivviNK~D~~-~~~~~~~~i~~~i~~ 229 (482)
+...+..++..+|++++|+|++++...++... +..+...++| +++|+||+|+. +.....+ .+..
T Consensus 73 ~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~----~~~~ 147 (308)
T 3iev_A 73 KKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLP----LIDE 147 (308)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHH----HHHH
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHH----HHHH
Confidence 44667778889999999999999998888888 7777778888 88999999998 4333222 2223
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
+.+.++ ...+++++||++|. |+.+|++.|.+.++.
T Consensus 148 l~~~~~---~~~~i~~vSA~~g~------------------gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 148 IHKKHP---ELTEIVPISALKGA------------------NLDELVKTILKYLPE 182 (308)
T ss_dssp HHHHCT---TCCCEEECBTTTTB------------------SHHHHHHHHHHHSCB
T ss_pred HHHhcc---CCCeEEEEeCCCCC------------------CHHHHHHHHHHhCcc
Confidence 333332 23689999999998 899999999987753
No 37
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=3.4e-20 Score=163.42 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=113.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh-----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD----- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~----- 160 (482)
++|+++|+.|+|||||+++|.+... ...+...+.|.+.....+..++..+.||||||+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS---------------AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWE 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe---------------eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchH
Confidence 6899999999999999999986411 11122345566666666777788999999999877
Q ss_pred --hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 161 --YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 161 --~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
+...+...+..+|++++|+|++++...........+...++| +++|+||+|+.+.++ ++.++. .+++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-------~~~~~~-~~~~-- 135 (161)
T 2dyk_A 67 KKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDDPKHEL-------YLGPLY-GLGF-- 135 (161)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCSGGGGG-------GCGGGG-GGSS--
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECcccccchH-------hHHHHH-hCCC--
Confidence 455666778899999999999998877777777777777888 899999999976421 223333 3332
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+++++||++|. |+.++++.|.+.+|
T Consensus 136 --~~~~~~Sa~~~~------------------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 --GDPIPTSSEHAR------------------GLEELLEAIWERLP 161 (161)
T ss_dssp --CSCEECBTTTTB------------------SHHHHHHHHHHHCC
T ss_pred --CCeEEEecccCC------------------ChHHHHHHHHHhCc
Confidence 378999999998 89999999987654
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=8.4e-20 Score=164.25 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=112.0
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhc--CCceeeeeeeEeecCCeEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA--RGITINTATVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~--~g~Ti~~~~~~~~~~~~~i~liDtPG~~ 159 (482)
+...++|+++|+.|+|||||+++|++... ..+.. .|.+.......+......+.||||||+.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQF----------------VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCC----------------TTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCC----------------CCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 34568999999999999999999986311 11112 2223333333333334678999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
+|...+...+..+|++|+|+|+++... ....+.+..+... ++| +++|+||+|+.+..+.. .+++.++.+..+
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~---~~~~~~~~~~~~ 148 (181)
T 2efe_B 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVT---AEDAQTYAQENG 148 (181)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSC---HHHHHHHHHHTT
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccccCC---HHHHHHHHHHcC
Confidence 998888888899999999999987654 3334444444443 556 88999999997532211 123445555443
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
++++++||++|. |+.+++++|.+.++.
T Consensus 149 -----~~~~~~Sa~~g~------------------gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 -----LFFMETSAKTAT------------------NVKEIFYEIARRLPR 175 (181)
T ss_dssp -----CEEEECCSSSCT------------------THHHHHHHHHHTCC-
T ss_pred -----CEEEEEECCCCC------------------CHHHHHHHHHHHHHh
Confidence 589999999998 899999999887653
No 39
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.82 E-value=2.8e-19 Score=162.66 Aligned_cols=160 Identities=23% Similarity=0.295 Sum_probs=115.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC-----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG----- 157 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 157 (482)
...++|+++|+.|+|||||+++|++... .......|.|........ +..+.+|||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI---------------AFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAK 82 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC---------------SCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc---------------ccccCCCCCccCeEEEEE---CCcEEEEECCCCcccc
Confidence 3467999999999999999999986420 011122334443332222 34688999999
Q ss_pred -----chhhHH---HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 158 -----HADYVK---NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 158 -----~~~~~~---~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
+..|.. ........+|++++|+|+..+......+.+..+...++| +++|+||+|+.+.++... ..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~-~~~~~~~ 160 (195)
T 3pqc_A 83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAK-KLEEHRK 160 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHH-HHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHHHH-HHHHHHH
Confidence 444544 344444566999999999998888888888888888999 889999999987544333 2336666
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++...+ .++++++||++|. |+.+++++|.+.++
T Consensus 161 ~~~~~~----~~~~~~~Sa~~~~------------------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 161 VFSKYG----EYTIIPTSSVTGE------------------GISELLDLISTLLK 193 (195)
T ss_dssp HHHSSC----CSCEEECCTTTCT------------------THHHHHHHHHHHHC
T ss_pred HHhhcC----CCceEEEecCCCC------------------CHHHHHHHHHHHhh
Confidence 666543 3789999999998 89999999987653
No 40
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=3e-20 Score=191.34 Aligned_cols=150 Identities=22% Similarity=0.316 Sum_probs=110.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc-----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----- 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----- 158 (482)
..++|+++|++|+|||||+|+|++.. ....+...|+|.+.....++.++..+.||||||+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEE---------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGK 238 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTST---------------TEEEC---------CCEEEEETTEEEEETTHHHHTCBTT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCC---------------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCcc
Confidence 46899999999999999999998641 1122345678888777778888999999999998
Q ss_pred -----hhhHHH-HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH-HHHHHHHHHHHHH
Q 011581 159 -----ADYVKN-MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE-LLQLVELEVRELL 231 (482)
Q Consensus 159 -----~~~~~~-~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~-~~~~i~~~i~~~l 231 (482)
+.|... +..++..+|++|+|+|++++...|+.+++..+...+.| +++|+||+|+.+..+ ..+.+.+++.+.+
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l 317 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDHF 317 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHHhc
Confidence 555433 34577889999999999999999999988888888888 899999999986432 2333444555555
Q ss_pred hhcCCCCCCccEEEcchhhhHH
Q 011581 232 SSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
.... ..|++++||++|.+
T Consensus 318 ~~~~----~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 318 QFLD----YAPILFMSALTKKR 335 (436)
T ss_dssp GGGT----TSCEEECCTTTCTT
T ss_pred ccCC----CCCEEEEecccCCC
Confidence 4432 47999999999975
No 41
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=3.2e-19 Score=162.65 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC-----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG----- 157 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 157 (482)
...++|+++|++|+|||||+++|++.... .......|.|.......+ +..+.||||||
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAK 83 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEEE---CCcEEEEECCCCCccc
Confidence 35689999999999999999999854100 011122344444333333 23699999999
Q ss_pred -----chhhHHHHHhhcccC---CeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 158 -----HADYVKNMITGAAQM---DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 158 -----~~~~~~~~~~~~~~~---D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
++.|...+...+..+ |++++|+|++++......+.+..+...++| +++|+||+|+.+..+... ..+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~-~~~~~~~ 161 (195)
T 1svi_A 84 VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDK-HAKVVRQ 161 (195)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHH-HHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHHHH-HHHHHHH
Confidence 666655555555444 999999999998888888777888888888 899999999987544332 2224444
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+... ...+++++||++|. |+.++++.|.+.+
T Consensus 162 ~~~~~----~~~~~~~~Sa~~~~------------------gv~~l~~~l~~~l 193 (195)
T 1svi_A 162 TLNID----PEDELILFSSETKK------------------GKDEAWGAIKKMI 193 (195)
T ss_dssp HHTCC----TTSEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHccc----CCCceEEEEccCCC------------------CHHHHHHHHHHHh
Confidence 34321 24789999999998 8999999987654
No 42
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=4.3e-20 Score=178.38 Aligned_cols=156 Identities=24% Similarity=0.300 Sum_probs=114.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|++|+|||||+|+|++.. .......|+|++.....++..+..+.||||||+.+|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~----------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTC----------------EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 45799999999999999999998641 11223567888888888888888999999999877541
Q ss_pred ---------H---HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 164 ---------N---MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 164 ---------~---~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
. .......+|++|+|+|+++ ..........+...++| +++|+||+|+.+...... ....+.
T Consensus 66 ~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~~~----~~~~l~ 138 (274)
T 3i8s_A 66 ISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDIAEKQNIRI----EIDALS 138 (274)
T ss_dssp ----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHHHHHTTEEE----CHHHHH
T ss_pred ccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccchhhhhHHH----HHHHHH
Confidence 1 1112368999999999987 34445556667777999 899999999864221100 122222
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
+.++ +|++++||++|. |+.+|++.|.+.++.
T Consensus 139 ~~lg-----~~~i~~SA~~g~------------------gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 139 ARLG-----CPVIPLVSTRGR------------------GIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHT-----SCEEECCCGGGH------------------HHHHHHHHHHTCCCC
T ss_pred HhcC-----CCEEEEEcCCCC------------------CHHHHHHHHHHHHhc
Confidence 3333 689999999998 899999999887653
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.81 E-value=9.8e-20 Score=163.33 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=110.2
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC---eEEEEEeCCCc
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN---RHYAHVDCPGH 158 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~---~~i~liDtPG~ 158 (482)
.+..++|+++|++|+|||||+++|++.. ...+...+++.+.....+...+ ..+.||||||+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQET----------------FGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGG----------------TTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCc----------------CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC
Confidence 3457899999999999999999998641 1112222232333333344443 68999999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
++|...+...+..+|++++|+|+++....+. ...+..+.. .+.|.+++|+||+|+.+...... ++..++.+
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~---~~~~~~~~ 143 (178)
T 2hxs_A 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP---EKHLRFCQ 143 (178)
T ss_dssp CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH---HHHHHHHH
T ss_pred ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH---HHHHHHHH
Confidence 9998888888899999999999988544322 223333333 26676789999999965321111 13334444
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
..+ ++++++||++|. |+.++++.|.+.+.
T Consensus 144 ~~~-----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 144 ENG-----FSSHFVSAKTGD------------------SVFLCFQKVAAEIL 172 (178)
T ss_dssp HHT-----CEEEEECTTTCT------------------THHHHHHHHHHHHT
T ss_pred HcC-----CcEEEEeCCCCC------------------CHHHHHHHHHHHHH
Confidence 443 589999999998 89999999987654
No 44
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=2e-19 Score=176.03 Aligned_cols=157 Identities=23% Similarity=0.254 Sum_probs=113.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch-hhH-
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA-DYV- 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~-~~~- 162 (482)
..+|+++|++|+|||||+|+|++...... ....+.|.+.....+..++..++|+||||+. ++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~---------------s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~ 72 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISIT---------------SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 72 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEEC---------------CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccc---------------CCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh
Confidence 45799999999999999999987522111 0112334333334456678899999999987 332
Q ss_pred -------HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC-hHHHHHHHHHHHHHHHhhc
Q 011581 163 -------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQLVELEVRELLSSY 234 (482)
Q Consensus 163 -------~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~i~~~i~~~l~~~ 234 (482)
..+..++..+|++++|+|+.+ +..++...+..+...+.| +++++||+|+.. .....+ .+.++.+.+
T Consensus 73 ~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~~~~~----~l~~l~~~~ 146 (301)
T 1ega_A 73 AINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAP-VILAVNKVDNVQEKADLLP----HLQFLASQM 146 (301)
T ss_dssp HHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHHHHH----HHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCC-EEEEEECcccCccHHHHHH----HHHHHHHhc
Confidence 223456678999999999988 888888888877777888 788999999987 332222 344444444
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++ .+++++||++|. |+.+|++.+...++
T Consensus 147 ~~----~~~i~iSA~~g~------------------~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 147 NF----LDIVPISAETGL------------------NVDTIAAIVRKHLP 174 (301)
T ss_dssp CC----SEEEECCTTTTT------------------THHHHHHHHHTTCC
T ss_pred Cc----CceEEEECCCCC------------------CHHHHHHHHHHhCC
Confidence 43 368999999998 88889999887765
No 45
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.8e-19 Score=164.38 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=114.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++.... .......|.+.......+......+.||||||+.+|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 44689999999999999999999864110 0111223444444444455556789999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...+..+|++|+|+|+++....+. ...+..+... ++| +++|+||+|+.+..+.. .+++.++++.++
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~v~---~~~~~~~~~~~~--- 159 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLSDIREVP---LKDAKEYAESIG--- 159 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHTTT---
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 888888899999999999988654333 3333444443 566 89999999996422211 124455555543
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.++++.|.+.++
T Consensus 160 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 160 --AIVVETSAKNAI------------------NIEELFQGISRQIP 185 (192)
T ss_dssp --CEEEECBTTTTB------------------SHHHHHHHHHHTCC
T ss_pred --CEEEEEeCCCCc------------------CHHHHHHHHHHHHH
Confidence 689999999998 89999999998765
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=7.2e-19 Score=157.48 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=108.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
....++|+++|++|+|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNK----------------FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSC----------------CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 3456899999999999999999998531 1111223333443334444444 478999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH-------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ-------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~-------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
+|...+...+..+|++++|+|+++....+... .+..+.. .++| +++|+||+|+.......+ ++.++.
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~----~~~~~~ 142 (177)
T 1wms_A 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISERQVSTE----EAQAWC 142 (177)
T ss_dssp GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSCSSCHH----HHHHHH
T ss_pred hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcccccccCHH----HHHHHH
Confidence 99998888999999999999999865433222 2222221 4667 889999999974221111 333444
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+.. ...+++++||++|. |+.++++.|.+.+
T Consensus 143 ~~~----~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 172 (177)
T 1wms_A 143 RDN----GDYPYFETSAKDAT------------------NVAAAFEEAVRRV 172 (177)
T ss_dssp HHT----TCCCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred Hhc----CCceEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 322 24789999999998 8889998887654
No 47
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.80 E-value=3.4e-19 Score=163.17 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=78.0
Q ss_pred eEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH-cCCCcEEEEEecCCCCChHHHHHHHHH
Q 011581 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ-VGVPNMVVFLNKQDQVDDEELLQLVEL 225 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~i~~ 225 (482)
..+.||||||+++|...+...+..+|++|+|+|++++...+.. ..+..+.. .+.| +++|+||+|+....... +
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~~----~ 167 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKIDKNKFQVDI----L 167 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSCH----H
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCCcccccCCH----H
Confidence 6789999999999988888889999999999999986554433 33333333 4555 89999999932211111 2
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++.++++..+ ++++++||++|. |+.+++++|.+.
T Consensus 168 ~~~~~~~~~~-----~~~~~~Sa~~~~------------------~i~~l~~~l~~~ 201 (208)
T 3clv_A 168 EVQKYAQDNN-----LLFIQTSAKTGT------------------NIKNIFYMLAEE 201 (208)
T ss_dssp HHHHHHHHTT-----CEEEEECTTTCT------------------THHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CcEEEEecCCCC------------------CHHHHHHHHHHH
Confidence 4455555543 689999999998 888888888664
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.2e-19 Score=160.24 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=102.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
+..++|+++|++|+|||||+++|++.... ..+...+++.+.....+..++ ..+.+|||||+++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL---------------AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC---------------CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC---------------CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45689999999999999999999864110 111122333343333334444 4789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++++|+|+++....+. .+.+..+.. .++| +++|+||+|+.+..+... ++..++.+..+
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 147 (180)
T 2g6b_A 73 FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAHERVVKR---EDGEKLAKEYG- 147 (180)
T ss_dssp ------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTSCCCSCH---HHHHHHHHHHT-
T ss_pred HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCcccccCH---HHHHHHHHHcC-
Confidence 99888888999999999999988544332 233333333 4566 899999999976322111 12333444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 148 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 ----LPFMETSAKTGL------------------NVDLAFTAIAKEL 172 (180)
T ss_dssp ----CCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999998 8889999887754
No 49
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.2e-19 Score=187.94 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=114.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC-----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG----- 157 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 157 (482)
...++|+++|++|+|||||+|+|++.. ....+...|+|.+.....++.++..+.||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE---------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST---------------TEEECC------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC---------------ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 356899999999999999999998531 122233457777777777888889999999999
Q ss_pred -----chhhHHH-HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH-HHHHHHHHHHHHH
Q 011581 158 -----HADYVKN-MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE-ELLQLVELEVREL 230 (482)
Q Consensus 158 -----~~~~~~~-~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~i~~~i~~~ 230 (482)
++.|... +..++..+|++|+|+|++++...++.+++..+...+.| +|+|+||+|+.+.+ ...+.+.+.+++.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcCCCchHHHHHHHHHHHHh
Confidence 6777554 44577899999999999999999999999999999988 89999999998632 2334444455665
Q ss_pred HhhcCCCCCCccEEEcchhhhHH
Q 011581 231 LSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
+...+ ..|++++||++|.+
T Consensus 337 ~~~~~----~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 337 FQFLD----YAPILFMSALTKKR 355 (456)
T ss_dssp CGGGT----TSCEEECCTTTCTT
T ss_pred cccCC----CCCEEEEcCCCCcC
Confidence 55443 37999999999983
No 50
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=1.8e-19 Score=159.87 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=110.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++.... ...+...|.+.......++.....+.+|||||+.+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFH--------------EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh
Confidence 4689999999999999999999863110 00112233333333444444456789999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.+...+..+|++++|+|+++....+. .+.+..+... ++| +++|.||+|+.+..... .++..++.+..+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 142 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIV-IALSGNKADLANKRAVD---FQEAQSYADDNS---- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSC---HHHHHHHHHHTT----
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccccC---HHHHHHHHHHcC----
Confidence 88888899999999999987644322 3333444333 455 78888999986532111 013344444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.++
T Consensus 143 -~~~~~~Sa~~g~------------------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 -LLFMETSAKTSM------------------NVNEIFMAIAKKLP 168 (170)
T ss_dssp -CEEEECCTTTCT------------------THHHHHHHHHHTSC
T ss_pred -CeEEEEeCCCCC------------------CHHHHHHHHHHHHh
Confidence 689999999998 89999999988664
No 51
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=1.8e-19 Score=159.89 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=108.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|+.|+|||||+++|++..... ......|.+.......++.....+.+|||||+.+|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE--------------NKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT--------------TCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 35799999999999999999998641100 0011122233333333333345789999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH---cCCCcEEEEEecCCCCCh---HHHHHHHHHHHHHHHhhcCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ---VGVPNMVVFLNKQDQVDD---EELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~---~~ip~iivviNK~D~~~~---~~~~~~i~~~i~~~l~~~~~ 236 (482)
.+...+..+|++++|+|+++....+.. +.+..+.. .++| +++|+||+|+.+. .+... ++..++.+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~v~~---~~~~~~~~~~~- 142 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXLQEGGERKVAR---EEGEKLAEEKG- 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSCCCCSCH---HHHHHHHHHHT-
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCccccccccCCCH---HHHHHHHHHcC-
Confidence 888888999999999999986443332 22333332 2566 8899999998653 11111 12333444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.++++.|.+.++
T Consensus 143 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 143 ----LLFFETSAKTGE------------------NVNDVFLGIGEKIP 168 (170)
T ss_dssp ----CEEEECCTTTCT------------------THHHHHHHHHTTSC
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHHh
Confidence 589999999998 89999999987653
No 52
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=163.70 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=111.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC----------------CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC----------------CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 456899999999999999999998531 1122234445555555555555 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++....+. ...+..+... ++| +++|+||+|+.+...... .+..++.+.++
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 152 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG- 152 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT-
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccCH---HHHHHHHHHcC-
Confidence 98888888999999999999998543222 2333333333 566 889999999976432211 13344444443
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 153 ----~~~~~~Sa~~g~------------------gv~~l~~~l~~~i 177 (196)
T 3tkl_A 153 ----IPFLETSAKNAT------------------NVEQSFMTMAAEI 177 (196)
T ss_dssp ----CCEEEECTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CcEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 7888887776644
No 53
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.80 E-value=2.2e-19 Score=158.73 Aligned_cols=156 Identities=20% Similarity=0.167 Sum_probs=103.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCc-eeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGI-TINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+.++|+++|++|+|||||+++|++.... ......+ +.......++.....+.||||||+++|.
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFI----------------EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC----------------SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCc----------------ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH
Confidence 4579999999999999999999864110 0001111 1111222232233458899999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
......+..+|++++|+|+++....+. ...+..+. ..++| +++|+||+|+.+..+... .+..++.+.++
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-- 139 (167)
T 1kao_A 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVSS---SEGRALAEEWG-- 139 (167)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT--
T ss_pred HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCCH---HHHHHHHHHhC--
Confidence 888888899999999999997543222 22222222 23677 899999999865322111 13334444443
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++++||++|. |+.++++.|.+.
T Consensus 140 ---~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 163 (167)
T 1kao_A 140 ---CPFMETSAKSKT------------------MVDELFAEIVRQ 163 (167)
T ss_dssp ---SCEEEECTTCHH------------------HHHHHHHHHHHH
T ss_pred ---CCEEEecCCCCc------------------CHHHHHHHHHHH
Confidence 589999999998 889999988764
No 54
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.80 E-value=3.3e-19 Score=158.67 Aligned_cols=157 Identities=20% Similarity=0.130 Sum_probs=108.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++... . ....|+......+..++..+.+|||||+++|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~-------~------------~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV-------V------------TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC-------C------------CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-------C------------CcCCcCccceEEEEECCEEEEEEECCCChhhhH
Confidence 468999999999999999999975310 0 011122223334555688999999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChH-HHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...+..+|++++|+|+++.... ...+.+..+.. .++| +++|+||+|+.+..+. + ++.+.+.......
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~ 140 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTS-S----EMANSLGLPALKD 140 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTGGGCTT
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCH-H----HHHHHhCchhccC
Confidence 888888999999999999986432 22333333322 3667 8999999999864211 1 1222221111222
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++++++||++|. |+.++++.|.+.+
T Consensus 141 ~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 167 (171)
T 1upt_A 141 RKWQIFKTSATKGT------------------GLDEAMEWLVETL 167 (171)
T ss_dssp SCEEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred CceEEEECcCCCCc------------------CHHHHHHHHHHHH
Confidence 35789999999998 8899999887754
No 55
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=2.8e-19 Score=162.15 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=107.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|+.|+|||||+++|++... . +.. .|+......+..++..+.||||||+++|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-------~----------~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEV-------V----------HTS--PTIGSNVEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSC-------E----------EEE--CCSCSSCEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC-------C----------cCc--CCCccceEEEEECCEEEEEEECCCCHhHH
Confidence 5678999999999999999999985310 0 001 12222233445567899999999999988
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++|+|+|+++... ....+.+..+.. .+.| +++|+||+|+.+... .+ ++.+.+....+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 148 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMT-VA----EISQFLKLTSIK 148 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHHTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCC-HH----HHHHHhChhhhc
Confidence 777778889999999999998643 333334433433 3666 899999999976321 11 222333221122
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
...++++++||++|. |+++++++|.+.++.+
T Consensus 149 ~~~~~~~~~Sa~~g~------------------gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 149 DHQWHIQACCALTGE------------------GLCQGLEWMMSRLKIR 179 (187)
T ss_dssp SSCEEEEECBTTTTB------------------THHHHHHHHHHHHCC-
T ss_pred CCCcEEEEccCCCCc------------------CHHHHHHHHHHHHHHH
Confidence 235789999999998 8999999998876543
No 56
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.79 E-value=4.2e-19 Score=160.24 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=109.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|++|+|||||+++|++.... .. . ....+... .....++.....+.||||||+++|.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~-----------~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP-GE-----------Y--IPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC-SS-----------C--CCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCC-CC-----------c--CCccccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 34689999999999999999999853110 00 0 00001111 1112222233467799999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHH---------HHHHH
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVE---------LEVRE 229 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~---------~~i~~ 229 (482)
......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+. .+..+
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 7777788899999999999886544433 234444443 777 889999999976433222211 13344
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
+.+.+++ .+++++||++|. |+.++++.|.+.+..+
T Consensus 147 ~~~~~~~----~~~~~~Sa~~g~------------------gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 147 MAKEIGA----VKYLECSALTQR------------------GLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHTTC----SEEEECCTTTCT------------------THHHHHHHHHHHHSCC
T ss_pred HHHhcCC----cEEEEecCCCcc------------------CHHHHHHHHHHHHhcc
Confidence 4444442 489999999998 8999999998866443
No 57
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.79 E-value=4e-19 Score=160.63 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=109.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKK----------------FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS----------------CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 446899999999999999999998641 1111223344444444444444 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHH---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAK---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++....+... .+..+. ..++| +++|+||+|+.+..+... .+..++.+..+
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 146 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLDADREVTF---LEASRFAQENE- 146 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT-
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCH---HHHHHHHHHcC-
Confidence 9999999999999999999999854433322 222222 23566 899999999964321110 13344444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 147 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 171 (186)
T 2bme_A 147 ----LMFLETSALTGE------------------NVEEAFVQCARKI 171 (186)
T ss_dssp ----CEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CEEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 7888888776643
No 58
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=4.6e-19 Score=163.41 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=109.5
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCc
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGH 158 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~ 158 (482)
.....++|+++|+.|+|||||+++|++.... +.....+.+.....+..++ ..+.||||||+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFP-----------------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCC-----------------C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCC-----------------CCcCCeecceeEEEEEECCEEEEEEEEECCCc
Confidence 3456789999999999999999999853110 0011112222222233333 45669999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHH---------H
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVE---------L 225 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~---------~ 225 (482)
++|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+. .
T Consensus 89 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHH
T ss_pred hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccchhhhhhhhccccccccHH
Confidence 99988888888999999999999986554443 344444444 777 899999999987543322221 2
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+...+.+.+++ .+++++||++|. |+.++++.|.+.
T Consensus 168 ~~~~~~~~~~~----~~~~~~SA~~g~------------------gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGA----VKYLECSALTQR------------------GLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTC----SEEEECCTTTCT------------------THHHHHHHHHHT
T ss_pred HHHHHHHhcCC----cEEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 34455555543 579999999998 899999998764
No 59
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=8.9e-19 Score=159.15 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=111.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|+.|+|||||+++|++.... .+ ...|+......++..+..+.||||||+++|.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN----------------ED--MIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 81 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC----------------CS--CCCCCSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC----------------Cc--cCCCCceeEEEEEeCCEEEEEEECCCCHhHH
Confidence 45689999999999999999999864110 00 1112223333456678899999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++|+|+|+++... ....+.+..+.. .++| +++|+||+|+.+..+. + ++.+.+......
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 155 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDE-K----ELIEKMNLSAIQ 155 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCH-H----HHHHHhChhhhc
Confidence 888888899999999999987543 223333333322 4677 8999999999763211 1 122222211122
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...++++++||++|. |+.+++++|.+.+.
T Consensus 156 ~~~~~~~~~SA~~g~------------------gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 156 DREICCYSISCKEKD------------------NIDITLQWLIQHSK 184 (188)
T ss_dssp SSCEEEEECCTTTCT------------------THHHHHHHHHHTCC
T ss_pred cCCeeEEEEECCCCC------------------CHHHHHHHHHHHHH
Confidence 235789999999998 89999999988664
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.79 E-value=5.3e-19 Score=160.56 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=107.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee-eeEeecC-----------CeEE
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA-TVEYETE-----------NRHY 150 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~-----------~~~i 150 (482)
...++|+++|++|+|||||+++|++... ..+....+..+.. ...+... ...+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKF----------------NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC----------------CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCC----------------CcCcccccceeeeeEEEEEecCCcccccccCcEEEE
Confidence 4468999999999999999999986311 0011112222222 2222222 3578
Q ss_pred EEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHH
Q 011581 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVEL 225 (482)
Q Consensus 151 ~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~ 225 (482)
.||||||+++|...+...+..+|++|+|+|+++....+. .+.+..+.. .++| +++|+||+|+.+..+... +
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~ 148 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVKE---E 148 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGCCSCH---H
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCH---H
Confidence 999999999999999999999999999999987554333 333333333 4677 899999999975322111 1
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++.++.+.++ ++++++||++|. |+.++++.|.+.+
T Consensus 149 ~~~~~~~~~~-----~~~~~~Sa~~~~------------------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 149 EARELAEKYG-----IPYFETSAANGT------------------NISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHHHHT-----CCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CCEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 3344444444 579999999998 8888888877643
No 61
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=1e-19 Score=173.93 Aligned_cols=151 Identities=24% Similarity=0.206 Sum_probs=111.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH--
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK-- 163 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~-- 163 (482)
++|+++|++|+|||||+|+|++... ......|+|++.....+..++..+.||||||+.++..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~----------------~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ----------------RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE----------------EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC----------------CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 5899999999999999999986421 1223457888888888888889999999999877643
Q ss_pred --------HHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 164 --------NMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 164 --------~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
.....+ ..+|++|+|+|+++ ..........+..+++| +++|+||+|+........ ....+.+.
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~----~~~~l~~~ 138 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDIAEHRGISI----DTEKLESL 138 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTCEE----CHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCcHH----HHHHHHHH
Confidence 122333 68999999999987 33444555666777899 899999999864321111 11222223
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++ +|++++||++|. |+.+|++.|.+.
T Consensus 139 lg-----~~vi~~SA~~g~------------------gi~el~~~i~~~ 164 (256)
T 3iby_A 139 LG-----CSVIPIQAHKNI------------------GIPALQQSLLHC 164 (256)
T ss_dssp HC-----SCEEECBGGGTB------------------SHHHHHHHHHTC
T ss_pred cC-----CCEEEEECCCCC------------------CHHHHHHHHHhh
Confidence 33 689999999998 899999999876
No 62
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=5.9e-19 Score=161.31 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=109.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
.....+|+++|+.|+|||||+++|++..... .....|+......++.....+.||||||+++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS-----------------KHITATVGYNVETFEKGRVAFTVFDMGGAKKF 76 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC---------------------CCCCCSSEEEEEEEETTEEEEEEEECCSGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc-----------------cccccccceeEEEEEeCCEEEEEEECCCCHhH
Confidence 3457899999999999999999997531110 00111222333445677889999999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHHc-----------CCCcEEEEEecCCCCChHHHHHHHHHHH--
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV-----------GVPNMVVFLNKQDQVDDEELLQLVELEV-- 227 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~~-----------~ip~iivviNK~D~~~~~~~~~~i~~~i-- 227 (482)
...+...+..+|++|+|+|+++... ....+.+..+... ++| +++|+||+|+.+.... +.+.+.+
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~~~~~~~~~ 154 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKTA-AELVEILDL 154 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCCH-HHHHHHHTH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCCH-HHHHHHhcc
Confidence 8888888999999999999998754 3333444444333 777 8999999999874211 1111111
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..+.+. ..++++++||++|. |+.++++.|.+.+
T Consensus 155 ~~~~~~-----~~~~~~~~Sa~~g~------------------gv~~l~~~l~~~~ 187 (199)
T 4bas_A 155 TTLMGD-----HPFVIFASNGLKGT------------------GVHEGFSWLQETA 187 (199)
T ss_dssp HHHHTT-----SCEEEEECBTTTTB------------------THHHHHHHHHHHH
T ss_pred hhhccC-----CeeEEEEeeCCCcc------------------CHHHHHHHHHHHH
Confidence 111122 34789999999998 8889988887754
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.79 E-value=2.7e-19 Score=163.08 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=110.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeee-----EeecCCeEEEEEeCC
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATV-----EYETENRHYAHVDCP 156 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~-----~~~~~~~~i~liDtP 156 (482)
....++|+++|+.|+|||||++.|.+.......... . ........|+..... .++.....+.|||||
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~ 82 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEM------V--SLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCC------E--EEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccc------c--ccccccccceeeeecccccccccCCceEEEEEeCC
Confidence 345689999999999999999877653111100000 0 000001112222111 223345678999999
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH---------cCCCcEEEEEecCCCCChHHHHHHHHHHH
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ---------VGVPNMVVFLNKQDQVDDEELLQLVELEV 227 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~---------~~ip~iivviNK~D~~~~~~~~~~i~~~i 227 (482)
|+++|.......++.+|++|+|+|++++...+..+.+..+.. .++| +++|+||+|+.+... .+++
T Consensus 83 G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~-----~~~~ 156 (198)
T 3t1o_A 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPDALP-----VEMV 156 (198)
T ss_dssp SCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTSTTCCC-----HHHH
T ss_pred ChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcccccC-----HHHH
Confidence 999999888889999999999999997766665555544332 3677 899999999976311 1255
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++..++ .+++++||++|. |+.++++.|.+.+
T Consensus 157 ~~~~~~~~~----~~~~~~Sa~~~~------------------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 157 RAVVDPEGK----FPVLEAVATEGK------------------GVFETLKEVSRLV 190 (198)
T ss_dssp HHHHCTTCC----SCEEECBGGGTB------------------THHHHHHHHHHHH
T ss_pred HHHHHhcCC----ceEEEEecCCCc------------------CHHHHHHHHHHHH
Confidence 666665543 389999999998 8888888877643
No 64
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.79 E-value=2.8e-19 Score=158.83 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=111.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|+.|+|||||+++|++.... .......|.+.......+......+.+|||||+++|..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFD--------------PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC--------------CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc
Confidence 4589999999999999999999864110 00112233444444444444457789999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.+...+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+..+... ++...+.+..+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~---- 142 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVREVME---RDAKDYADSIH---- 142 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT----
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCccccccccCH---HHHHHHHHHcC----
Confidence 88888899999999999988654333 3333444443 445 788999999976322211 13344444433
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.++++.|.+.++
T Consensus 143 -~~~~~~Sa~~~~------------------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 -AIFVETSAKNAI------------------NINELFIEISRRIP 168 (170)
T ss_dssp -CEEEECBTTTTB------------------SHHHHHHHHHHHCC
T ss_pred -CEEEEEeCCCCc------------------CHHHHHHHHHHHHh
Confidence 689999999998 89999999988664
No 65
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=1.2e-18 Score=161.52 Aligned_cols=117 Identities=21% Similarity=0.200 Sum_probs=75.2
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCch
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHA 159 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~ 159 (482)
+++..++|+++|+.|+|||||+++|++.. + . +....++.+.....+... +..+.||||||+.
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~-------~---------~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-------Y---------R-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSC-------C---------C-CBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCC-------c---------c-cccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 34567899999999999999999998641 0 0 011122222222222222 5789999999999
Q ss_pred hhHH-HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH---------HcCCCcEEEEEecCCCCCh
Q 011581 160 DYVK-NMITGAAQMDGAILVVSGADGPMPQTKEHILLAK---------QVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 160 ~~~~-~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~---------~~~ip~iivviNK~D~~~~ 216 (482)
+|.. .+...+..+|++|+|+|+++ ......+....+. ..++| +++|+||+|+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 130 (214)
T 2fh5_B 66 SLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTTC
T ss_pred hHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCCc
Confidence 9987 45566889999999999986 2222222222211 12566 8999999999763
No 66
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=3e-19 Score=160.00 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=109.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++.... .......|.+.......++.....+.||||||+++|.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 78 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFM--------------ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR 78 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--------------SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh
Confidence 34689999999999999999999864110 0001122333333333343334678999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...+..+|++|+|+|+++....+... .+..+.. .++| +++|+||+|+.+..+.. .++++++++..+
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 151 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVT---YEEAKQFAEENG--- 151 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTT---
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 88888899999999999999865433322 2232332 3566 89999999996532211 124445555543
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 152 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 --LLFLEASAKTGE------------------NVEDAFLEAAKKI 176 (179)
T ss_dssp --CEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 8899998887643
No 67
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=4e-19 Score=159.22 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=109.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
.+.++|+++|+.|+|||||+++|++.. .......+++.+.....+..++ ..+.||||||+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDS----------------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSC----------------CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCC----------------CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 345899999999999999999998531 1111223344444444444444 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++++|+|+++..... ....+..+.. .++| +++|+||+|+.+..+... .+...+.+..+
T Consensus 76 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 150 (179)
T 2y8e_A 76 FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVST---EEGERKAKELN- 150 (179)
T ss_dssp GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcccccCcCCH---HHHHHHHHHcC-
Confidence 9888888888999999999998743322 2223333322 3666 889999999875322111 12333344333
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.++++.|.+.++
T Consensus 151 ----~~~~~~Sa~~~~------------------~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 151 ----VMFIETSAKAGY------------------NVKQLFRRVAAALP 176 (179)
T ss_dssp ----CEEEEEBTTTTB------------------SHHHHHHHHHHTCC
T ss_pred ----CeEEEEeCCCCC------------------CHHHHHHHHHHHHh
Confidence 689999999998 89999999988664
No 68
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=1.4e-18 Score=159.04 Aligned_cols=164 Identities=13% Similarity=0.148 Sum_probs=105.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeE--ee-cCCeEEEEEeCCCc
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE--YE-TENRHYAHVDCPGH 158 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~--~~-~~~~~i~liDtPG~ 158 (482)
.+..++|+++|..|+|||||+++|++.. ..+...+.+....... +. .....+.||||||+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM-----------------SPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 79 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC-----------------CGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC-----------------CCcceeeeccccceeeeeccCCCeeEEEEEECCCC
Confidence 4557899999999999999999887421 0111112222222222 21 34578999999999
Q ss_pred hhhHHHH---HhhcccCCeEEEeecCCCCChHHHHHHHHHHHH-----cCCCcEEEEEecCCCCChHHH---HHHHHHHH
Q 011581 159 ADYVKNM---ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-----VGVPNMVVFLNKQDQVDDEEL---LQLVELEV 227 (482)
Q Consensus 159 ~~~~~~~---~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~---~~~i~~~i 227 (482)
++|.... ...++.+|++|+|+|+++...........++.. .++| +++|.||+|+.+.+.. ...+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~v~~~~ 158 (196)
T 3llu_A 80 MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDGLSDDHKIETQRDIHQRA 158 (196)
T ss_dssp CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEeccccCchhhhhHHHhHHHHHH
Confidence 9987766 577889999999999998743333333333333 2667 8999999999875432 12222222
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+.+.........++++++||++ . |+.++++.|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~e~Sa~~-~------------------~v~~~f~~l~~~ 194 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFYLTSIYD-H------------------SIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHTTCTTSCEEEEEECTTS-T------------------HHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCcceEEEEech-h------------------hHHHHHHHHHHH
Confidence 22233322222357899999999 8 889999888764
No 69
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.79 E-value=1.8e-18 Score=152.85 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=107.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNM 165 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 165 (482)
++|+++|+.|+|||||+++|++... . +. ..|+......++..+..+.+|||||+++|...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~-------~-----~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI-------V-----TT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS-------S-----CC-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc-------C-----cc-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 4899999999999999999986411 0 00 112222333455677899999999999998888
Q ss_pred HhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCC
Q 011581 166 ITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDD 240 (482)
Q Consensus 166 ~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 240 (482)
...+..+|++++|+|+++..... ..+.+..+.. .++| +++|+||+|+.+.... + ++.+.+.........
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~ 135 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRHRN 135 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCSSCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCCCH-H----HHHHHhCcccccCcc
Confidence 88899999999999998864322 2333333322 2666 8999999999763211 1 222222111112235
Q ss_pred ccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 241 ~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.++++.|.+.+.
T Consensus 136 ~~~~~~Sa~~~~------------------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 136 WYIQATCATSGD------------------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEEECBTTTTB------------------THHHHHHHHHHHC-
T ss_pred EEEEEcccCCCc------------------CHHHHHHHHHHHHh
Confidence 789999999998 89999999987653
No 70
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=160.61 Aligned_cols=159 Identities=20% Similarity=0.200 Sum_probs=110.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++..... . ....|+......+..++..+.||||||+++|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~---------------~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 82 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQS---------------Q--NILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN 82 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCC---------------S--SCCCCSSEEEEEEECSSCEEEEEEECCSTTTGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC---------------C--CcCCccceeEEEEEECCEEEEEEECCCCHHHHH
Confidence 45899999999999999999997542100 0 111233333444556678999999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.+...+..+|++|+|+|+++... ....+.+..+.. .++| +++|+||+|+.+.... + ++.+.+....+
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~ 156 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVTS-V----KVSQLLCLENI 156 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCCH-H----HHHHHHTGGGC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCCH-H----HHHHHhChhhc
Confidence 88888899999999999987533 222333333332 3677 8999999999763211 1 23333321122
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
....++++++||++|. |+.++++.|.+.+
T Consensus 157 ~~~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 185 (190)
T 2h57_A 157 KDKPWHICASDAIKGE------------------GLQEGVDWLQDQI 185 (190)
T ss_dssp CSSCEEEEECBTTTTB------------------THHHHHHHHHHHC
T ss_pred cCCceEEEEccCCCCc------------------CHHHHHHHHHHHH
Confidence 2235789999999998 8999999998765
No 71
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=163.52 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=107.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+++|++... ..+....++.+.....+..++ ..+.||||||+++|
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF----------------CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC----------------CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 457999999999999999999975311 111222333343334444444 57899999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
...+...+..+|++|+|+|+++....+.. +.+..+... ++| +++|+||+|+.+..+... ++..++.+.+.
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~~~~~v~~---~~~~~~~~~~~-- 162 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREITR---QQGEKFAQQIT-- 162 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHTST--
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCH---HHHHHHHHhcC--
Confidence 99888899999999999999986544432 223334332 566 899999999865322111 13344444431
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
..+++++||++|. |+.++++.|.+.
T Consensus 163 --~~~~~~~SA~~g~------------------gi~~l~~~l~~~ 187 (192)
T 2il1_A 163 --GMRFCEASAKDNF------------------NVDEIFLKLVDD 187 (192)
T ss_dssp --TCEEEECBTTTTB------------------SHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 3689999999998 888888888764
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.78 E-value=7.2e-19 Score=159.76 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=103.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
++.++|+++|+.|+|||||+++|++... ..+....++.+.....+..++ ..+.||||||+++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRF----------------PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC----------------CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh
Confidence 4568999999999999999999986311 011122222222233333343 5789999999999
Q ss_pred hH-HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 161 YV-KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 161 ~~-~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
|. ......++.+|++|+|+|+++....+. .+.+..+. ..++| +++|+||+|+.+..+... ++..++.+..
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~ 157 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVPT---DLAQKFADTH 157 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHT
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeCH---HHHHHHHHHc
Confidence 98 666777889999999999987433222 22222222 23677 899999999965322111 1334444444
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+ ++++++||++|.. ..|+.++++.|.+.+
T Consensus 158 ~-----~~~~~~Sa~~~~~---------------~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 158 S-----MPLFETSAKNPND---------------NDHVEAIFMTLAHKL 186 (189)
T ss_dssp T-----CCEEECCSSSGGG---------------GSCHHHHHHHHC---
T ss_pred C-----CEEEEEeCCcCCc---------------ccCHHHHHHHHHHHH
Confidence 3 5899999999820 018899999987654
No 73
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=6.5e-19 Score=162.18 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=108.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 87 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF----------------PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC----------------CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCC----------------CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 4468999999999999999999986411 111222333444333444444 4788999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...++.+|++|+|+|+++....+. .+.+..+.. .++| +++|+||+|+.+..+... ++..++.+..+
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~~~~~~~- 162 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLAERREVSQ---QRAEEFSEAQD- 162 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCSSCH---HHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHHHcC-
Confidence 99988899999999999999987543222 233333333 2566 889999999975322111 12333333333
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 163 ----~~~~~~Sa~~g~------------------gv~~l~~~l~~~i 187 (201)
T 2ew1_A 163 ----MYYLETSAKESD------------------NVEKLFLDLACRL 187 (201)
T ss_dssp ----CCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 8888888877644
No 74
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=7.4e-19 Score=158.60 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=106.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++... . ......| .....+..++..+.||||||+++|.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-------~--------~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~ 79 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-------V--------HTSPTIG----SNVEEIVINNTRFLMWDIGGQESLR 79 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-------E--------EEECCSS----SSCEEEEETTEEEEEEEESSSGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-------C--------ccCCcCc----eeeEEEEECCEEEEEEECCCCHhHH
Confidence 3458999999999999999999985411 0 0001112 1223344567899999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+.... + ++.+.+......
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~~~~~~~~ 153 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTV-A----EISQFLKLTSIK 153 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCCH-H----HHHHHhCccccc
Confidence 888888899999999999998644 333334433332 4666 8999999999763111 1 222222211122
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
...++++++||++|. |+.+++++|.+.
T Consensus 154 ~~~~~~~~~Sa~~g~------------------gi~~l~~~l~~~ 180 (181)
T 2h17_A 154 DHQWHIQACCALTGE------------------GLCQGLEWMMSR 180 (181)
T ss_dssp SSCEEEEECBTTTTB------------------THHHHHHHHHTC
T ss_pred CCceEEEEccCCCCc------------------CHHHHHHHHHhh
Confidence 235689999999998 899999998753
No 75
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=157.34 Aligned_cols=159 Identities=19% Similarity=0.156 Sum_probs=99.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY- 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~- 161 (482)
+..++|+++|++|+|||||+++|++.... ......|.+.......++.....+.+|||||+.++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQER---------------DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD 66 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC--------------------CCCSSSSEEEEEEEETTEEEEEEEECCC------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCc---------------cccCccccceeEEEEEECCEEEEEEEEecCCCCccc
Confidence 35689999999999999999999853211 01112344443333334333357889999999884
Q ss_pred -HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc----CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 162 -VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV----GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 162 -~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~----~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
.......++.+|++++|+|+++....+. .+.+..+... ++| +++|+||+|+.+..+... ++...+...++
T Consensus 67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~~~~~~~ 142 (175)
T 2nzj_A 67 KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLARCREVSV---EEGRACAVVFD 142 (175)
T ss_dssp -CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCTTTCCSCH---HHHHHHHHHHT
T ss_pred hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhccccccCH---HHHHHHHHHcC
Confidence 3444456678999999999987543222 2333334443 677 899999999976322111 12233333333
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 143 -----~~~~~~Sa~~g~------------------gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 -----CKFIETSATLQH------------------NVAELFEGVVRQL 167 (175)
T ss_dssp -----SEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred -----CeEEEEecCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 8889988887654
No 76
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.78 E-value=2.2e-19 Score=161.98 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=84.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|++|+|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDA----------------FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC----------------CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 346899999999999999999997531 1111222334444333444444 6789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChH-HHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++.... ...+.+..+... ++| +++|+||+|+.+..+... ++..++.+.++
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~- 144 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVNDKRQVSK---ERGEKLALDYG- 144 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CCSCCCSCH---HHHHHHHHHHT-
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCCccCcCCH---HHHHHHHHHcC-
Confidence 988888888999999999999885432 223344444432 566 899999999975321111 13344444444
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 145 ----~~~~~~Sa~~~~------------------~i~~l~~~l~~~i 169 (183)
T 2fu5_C 145 ----IKFMETSAKANI------------------NVENAFFTLARDI 169 (183)
T ss_dssp ----CEEEECCC---C------------------CHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 7888888876644
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=160.36 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=107.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++.. ...+....++.+.....+..++ ..+.||||||+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA----------------FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC----------------C----------CEEEEEEEETTEEEEEEEECCTTCGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC----------------CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 446899999999999999999998531 1111122222333333444444 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...++.+|++|+|+|+++....+ ..+.+..+.. .++| +++|+||+|+.+..+.. .+++.++++.+++
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~ 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIV-QLLIGNKSDLSELREVS---LAEAQSLAEHYDI 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSC---HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCccccccccC---HHHHHHHHHHcCC
Confidence 9998888999999999999998754322 2333333433 3566 88999999997522111 1244455555543
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.|.+.+
T Consensus 167 ----~~~~~~SA~~g~------------------gi~~l~~~l~~~i 191 (201)
T 2hup_A 167 ----LCAIETSAKDSS------------------NVEEAFLRVATEL 191 (201)
T ss_dssp ----SEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 289999999998 8888888887755
No 78
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=160.11 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=109.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
....++|+++|++|+|||||+++|++.. ...+...+++.+.....+..++ ..+.||||||++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNT----------------FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCC----------------CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 3456899999999999999999997431 1122234445555555555555 678999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
+|...+...+..+|++++|+|++++...+... .+..+... ++| +++|+||+|+.+...... .+...+....+
T Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 144 (181)
T 3tw8_B 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDPERKVVET---EDAYKFAGQMG- 144 (181)
T ss_dssp GCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCchhcccCH---HHHHHHHHHcC-
Confidence 99888888889999999999999854433322 23333322 466 889999999875321111 12333444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 145 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 145 ----IQLFETSAKENV------------------NVEEMFNCITELV 169 (181)
T ss_dssp ----CCEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ----CeEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8888888887644
No 79
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=4.2e-19 Score=157.87 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=102.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~- 162 (482)
...+|+++|++|+|||||+++|++... ..+...|+|++.....+..++..+.+|||||+.+|.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENV----------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 65 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSS----------------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCe----------------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCC
Confidence 357899999999999999999985311 011223555555555566677899999999988763
Q ss_pred -----HHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 163 -----KNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 163 -----~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
.....++ ..+|++++|+|+++. ......+..+...++| +++|.||+|+........ +..++.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~ 138 (165)
T 2wji_A 66 NSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGIEI----DVDKLEKILG 138 (165)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCC-EEEEEECHHHHHHTTCCC----CHHHHHHHHT
T ss_pred cchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCC-EEEEEEchHhccccChhh----HHHHHHHHhC
Confidence 1122233 379999999999862 2233344455556888 889999999853211100 1222333333
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+++++||++|. |+.++++.|.+.+
T Consensus 139 -----~~~~~~SA~~~~------------------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 -----VKVVPLSAAKKM------------------GIEELKKAISIAV 163 (165)
T ss_dssp -----SCEEECBGGGTB------------------SHHHHHHHHHHHT
T ss_pred -----CCEEEEEcCCCC------------------CHHHHHHHHHHHh
Confidence 579999999998 8999999987754
No 80
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.78 E-value=1.1e-18 Score=154.38 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=102.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|+.|+|||||+++|++...... . ....+.+. .....++.....+.||||||+.+|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~------------~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED------------Y--EPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC------------C--CTTCCEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC------------C--CCCcceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 568999999999999999999986421000 0 00011111 11122322335789999999999998
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...+..+|++++|+|+++...... .+.+..+.. .++| +++|+||+|+.+..+.. .++..++++..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 140 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVS---VEEAKNRADQWN--- 140 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGGCCSC---HHHHHHHHHHHT---
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccccccCccC---HHHHHHHHHHcC---
Confidence 88888999999999999997543222 222222222 2677 89999999987532211 123444444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 141 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 141 --VNYVETSAKTRA------------------NVDKVFFDLMREI 165 (168)
T ss_dssp --CEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred --CeEEEeCCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8899999887643
No 81
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.78 E-value=6.4e-19 Score=156.63 Aligned_cols=158 Identities=17% Similarity=0.072 Sum_probs=101.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++... ..+...+++.+.....+..+ ...+.+|||||+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKF----------------NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC----------------CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC----------------CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 3468999999999999999999986411 01111222333222333333 35788999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..+... ++..++.+..+
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 142 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERHVSI---QEAESYAESVG- 142 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT-
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccccCH---HHHHHHHHHcC-
Confidence 98888888899999999999988544332 223333322 3666 889999999975322111 13444555443
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 143 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 167 (170)
T 1z08_A 143 ----AKHYHTSAKQNK------------------GIEELFLDLCKRM 167 (170)
T ss_dssp ----CEEEEEBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ----CeEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 8899999887643
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=1.8e-18 Score=156.55 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=109.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
++.++|+++|++|+|||||+++|++.. .. ....|+......+..++..+.+|||||+++|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~-----------------~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD-----------------TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS-----------------SCCCCSSEEEEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC-----------------cccccCccceEEEEECCEEEEEEECCCCHhHH
Confidence 567899999999999999999998531 00 00112222233445578899999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChH-HHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++++|+|+++.... ...+.+..+.. .++| +++|+||+|+.+.... + ++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 150 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPGALSC-N----AIQEALELDSIR 150 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCCCCH-H----HHHHHhChhhcc
Confidence 8888888999999999999986542 33333333332 3566 8999999999763221 1 222222211122
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...++++++||++|. |+.++++.|.+.++
T Consensus 151 ~~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 151 SHHWRIQGCSAVTGE------------------DLLPGIDWLLDDIS 179 (186)
T ss_dssp SSCEEEEECCTTTCT------------------THHHHHHHHHHHHH
T ss_pred CCceEEEEeeCCCCC------------------CHHHHHHHHHHHHH
Confidence 235789999999998 88999999887653
No 83
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.78 E-value=7.3e-19 Score=161.84 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=105.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~ 159 (482)
....++|+++|+.|+|||||+++|++... ......+++.+.....+..+ ...+.||||||+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKF----------------SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC----------------CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCC----------------CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45678999999999999999999986411 01112233334333334333 3678999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHH-------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ-------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~-------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
+|...+...+..+|++|+|+|+++....+..+. +..+.. .++| +++|+||+|+.+.....+ ++.++.
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~----~~~~~~ 143 (207)
T 1vg8_A 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLENRQVATK----RAQAWC 143 (207)
T ss_dssp GGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSSCCCSCHH----HHHHHH
T ss_pred HHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCcccccCHH----HHHHHH
Confidence 998777788889999999999987644332222 222221 3667 889999999974221111 233333
Q ss_pred hhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
... ..++++++||++|. |+.+++++|.+.+
T Consensus 144 ~~~----~~~~~~~~Sa~~g~------------------gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 144 YSK----NNIPYFETSAKEAI------------------NVEQAFQTIARNA 173 (207)
T ss_dssp HHT----TSCCEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred Hhc----CCceEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 321 24789999999998 7777777776643
No 84
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=1.3e-18 Score=156.34 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=96.4
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec---CCeEEEEEeCCCc
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET---ENRHYAHVDCPGH 158 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~---~~~~i~liDtPG~ 158 (482)
....++|+++|+.|+|||||+++|++... ..+...+++.+.....+.. ....+.||||||+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKY----------------SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC----------------CTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcC----------------CcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 45678999999999999999999986411 1111122222222333333 3467899999999
Q ss_pred hhhHHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH-------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 011581 159 ADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ-------VGVPNMVVFLNKQDQVDDEELLQLVELEVREL 230 (482)
Q Consensus 159 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~-------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~ 230 (482)
.+|...+...+..+|++|+|+|+++....+.. +.+..+.. .++| +++|+||+|+........ .++..++
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~v~--~~~~~~~ 145 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDAEESKKIVS--EKSAQEL 145 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTSCGGGCCSC--HHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCccccccccCC--HHHHHHH
Confidence 99998888889999999999999886443322 22222222 4667 889999999964321100 1133334
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+.. ...+++++||++|. |+.++++.|.+.
T Consensus 146 ~~~~----~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 175 (182)
T 1ky3_A 146 AKSL----GDIPLFLTSAKNAI------------------NVDTAFEEIARS 175 (182)
T ss_dssp HHHT----TSCCEEEEBTTTTB------------------SHHHHHHHHHHH
T ss_pred HHhc----CCCeEEEEecCCCC------------------CHHHHHHHHHHH
Confidence 3322 24789999999998 888888888764
No 85
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=8.8e-20 Score=185.64 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=116.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe-EEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR-HYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~-~i~liDtPG~~~~ 161 (482)
...++|+++|++|+|||||+++|++.. ....+...|+|++.....++..+. .+.|||||||.+|
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 456899999999999999999997531 122345667788877777776654 8999999999876
Q ss_pred -------HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 162 -------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 162 -------~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
...+...+..+|++|+|+|+ +...++.+.+..+...++| +++|+||+|+.+.... +...++.+.+
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~~-----~~~~~l~~~~ 168 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKAE-----ELKGLYESRY 168 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCCT-----HHHHHSSCCT
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccHH-----HHHHHHHHHc
Confidence 34466778899999999999 7888999999999999999 8999999999874322 1223333333
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~~ 286 (482)
.++++++||++|. |++++++.|.+.++.+
T Consensus 169 -----g~~v~~vSAktg~------------------gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 169 -----EAKVLLVSALQKK------------------GFDDIGKTISEILPGD 197 (423)
T ss_dssp -----TCCCCCCSSCCTT------------------STTTHHHHHHHHSCCC
T ss_pred -----CCCEEEEECCCCC------------------CHHHHHHHHHHhhhhh
Confidence 3689999999998 8889999998887543
No 86
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.78 E-value=7e-19 Score=155.78 Aligned_cols=158 Identities=17% Similarity=0.153 Sum_probs=104.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+.++|+++|++|+|||||+++|++.... .+....+.... ....++.....+.+|||||+.+|.
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV----------------EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC----------------CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH
Confidence 4579999999999999999999863110 00011111111 112233345678999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++++|+|+++...... ...+..+.. .++| +++|+||+|+.+...... ++..++.+.++
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~-- 139 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVGK---EQGQNLARQWC-- 139 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT--
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccccCCH---HHHHHHHHHcc--
Confidence 888888889999999999987433222 222222222 3677 889999999975322111 23344444432
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..+++++||++|. |++++++.|.+.+
T Consensus 140 --~~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 140 --NCAFLESSAKSKI------------------NVNEIFYDLVRQI 165 (167)
T ss_dssp --SCEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred --CCcEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 3789999999998 8999999887643
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.77 E-value=3.3e-18 Score=155.84 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=107.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
.+..+|+++|++|+|||||+++|++... . ....|+......+..++..+.+|||||+++|.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~-------------~------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRL-------------A------TLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCC-------------C------CCCCCCSCEEEEEEETTEEEEEEECCCSGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCC-------------C------ccccCCCCCeEEEEECCEEEEEEECCCCHHHH
Confidence 4557999999999999999999986311 0 01113322334556677899999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC--
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE-- 235 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~-- 235 (482)
..+...++.+|++++|+|+++....+ ..+.+..+.. .+.| +++|+||+|+.+... . +++.+.++...
T Consensus 82 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNAVS-E----AELRSALGLLNTT 155 (190)
T ss_dssp TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCC-H----HHHHHHTTCSSCC
T ss_pred HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCCCC-H----HHHHHHhCCcccc
Confidence 77777888999999999999865422 3333333322 4677 899999999975211 1 13344443321
Q ss_pred -----CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 236 -----FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 236 -----~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.....++++++||++|. |+.++++.|.+.
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g~------------------gi~~l~~~l~~~ 189 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMRN------------------GYLEAFQWLSQY 189 (190)
T ss_dssp C---CCSSCCEEEEECBTTTTB------------------SHHHHHHHHHTT
T ss_pred ccccccccceEEEEEeECCcCC------------------CHHHHHHHHHhh
Confidence 01135789999999998 899999998764
No 88
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=8.1e-19 Score=155.82 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=103.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
.++|+++|++|+|||||+++|++... ..+...+++.+.....+..+ ...+.||||||+++|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF----------------NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC----------------CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC----------------CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhh
Confidence 57999999999999999999986311 11112223333333334444 3578999999999988
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...+..+|++++|+|+++...... ...+..+... ++| +++|+||+|+.......+ +..++.+.++
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~----~~~~~~~~~~--- 138 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTAD----QGEALAKELG--- 138 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTCCSCHH----HHHHHHHHHT---
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCCcCccCHH----HHHHHHHHcC---
Confidence 777778889999999999987544222 2333333332 566 899999999954211111 3334444444
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 139 --~~~~~~Sa~~~~------------------gv~~l~~~l~~~~ 163 (170)
T 1g16_A 139 --IPFIESSAKNDD------------------NVNEIFFTLAKLI 163 (170)
T ss_dssp --CCEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred --CeEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 579999999998 8888888887654
No 89
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.77 E-value=2.1e-18 Score=161.77 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=106.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc-----
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH----- 158 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~----- 158 (482)
..++|+++|.+|+|||||+++|++... ......+.|.+.....++..+..+.||||||+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 91 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV----------------DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE----------------EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCccc
Confidence 458999999999999999999975311 01112334555555555667789999999998
Q ss_pred -hhh---HHHHHhhcccCCeEEEeecCCCCCh---HHHHHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 159 -ADY---VKNMITGAAQMDGAILVVSGADGPM---PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 159 -~~~---~~~~~~~~~~~D~~ilVvda~~g~~---~~t~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
+.. ...+......+|++|+|+|+++... ....+.+..+... ++| +++|+||+|+.+..+........+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~ 170 (228)
T 2qu8_A 92 ENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDKCNMDSLSIDNKLLIKQ 170 (228)
T ss_dssp GGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGGCC--CCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEeCcccCCchhhHHHHHHHHHH
Confidence 331 1222334577899999999998644 2234455555554 777 89999999998643322222224455
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+.+..+ ..++++++||++|. |+.++++.|.+.+
T Consensus 171 ~~~~~~---~~~~~~~~SA~~g~------------------gi~~l~~~l~~~i 203 (228)
T 2qu8_A 171 ILDNVK---NPIKFSSFSTLTGV------------------GVEQAKITACELL 203 (228)
T ss_dssp HHHHCC---SCEEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHHhcC---CCceEEEEecccCC------------------CHHHHHHHHHHHH
Confidence 555433 13689999999998 7888888877644
No 90
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.77 E-value=5.9e-19 Score=156.40 Aligned_cols=156 Identities=13% Similarity=0.153 Sum_probs=104.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~ 161 (482)
..++|+++|++|+|||||+++|++.... .+...+++.+.....+..+ ...+.||||||+.+|
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFT----------------KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC----------------CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH
Confidence 4689999999999999999999863110 0111112222222233333 457899999999998
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
...+...+..+|++++|+|+++....+ ....+..+.. .+.| +++|+||+|+.+..+... +++.++.+.++
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 140 (168)
T 1z2a_A 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCIKN---EEAEGLAKRLK--- 140 (168)
T ss_dssp TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSSCH---HHHHHHHHHHT---
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccccCH---HHHHHHHHHcC---
Confidence 777777888999999999998754322 2223333322 3677 889999999875322111 13344444444
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++++||++|. |+.++++.|.+.
T Consensus 141 --~~~~~~Sa~~~~------------------~i~~l~~~l~~~ 164 (168)
T 1z2a_A 141 --LRFYRTSVKEDL------------------NVSEVFKYLAEK 164 (168)
T ss_dssp --CEEEECBTTTTB------------------SSHHHHHHHHHH
T ss_pred --CeEEEEecCCCC------------------CHHHHHHHHHHH
Confidence 589999999998 788888888664
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.2e-18 Score=154.82 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=104.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
.++|+++|+.|+|||||+++|++.... ......+.... ....++.....+.+|||||+.+|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR----------------ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA 66 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC----------------SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 579999999999999999999853110 00001111111 1122233345689999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChH-HHHHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
.....+..+|++++|+|+++.... .....+..+.. .++| +++|+||+|+.+..+... .+...+.+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~~~v~~---~~~~~~~~~~~-- 140 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPSREVQS---SEAEALARTWK-- 140 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT--
T ss_pred HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccccccCH---HHHHHHHHHhC--
Confidence 888888999999999999875432 22333333333 2677 899999999865322111 12233333333
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.+.
T Consensus 141 ---~~~~~~Sa~~~~------------------gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 141 ---CAFMETSAKLNH------------------NVKELFQELLNLEK 166 (172)
T ss_dssp ---CEEEECBTTTTB------------------SHHHHHHHHHHTCC
T ss_pred ---CeEEEecCCCCc------------------CHHHHHHHHHHHHh
Confidence 689999999998 89999999988764
No 92
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-18 Score=160.25 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=98.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+++|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS--------------CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC--------------CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcc
Confidence 35899999999999999999998531100 0011123333333333333456789999999999999
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.+...+..+|++|+|+|+++...... ...+..+.. .++| +++|+||+|+.+...... ++..++.+.++
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 144 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERVVSS---ERGRQLADHLG---- 144 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCCSCH---HHHHHHHHHHT----
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCcccccCH---HHHHHHHHHCC----
Confidence 99999999999999999987544332 333334443 2566 899999999976322111 13344444444
Q ss_pred CccEEEcchhhhH
Q 011581 240 DVPIISGSALLAL 252 (482)
Q Consensus 240 ~~~~i~~Sa~~g~ 252 (482)
++++++||++|.
T Consensus 145 -~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 145 -FEFFEASAKDNI 156 (203)
T ss_dssp -CEEEECBTTTTB
T ss_pred -CeEEEEECCCCC
Confidence 589999999987
No 93
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.77 E-value=7.9e-19 Score=161.77 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=106.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY----------------TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC----------------CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 3468999999999999999999986411 111122333333333344444 4789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++....+.. ..+..+.. .++| +++|+||+|+.+..+... ++..++.+..+
T Consensus 70 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 144 (206)
T 2bcg_Y 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKDKRVVEY---DVAKEFADANK- 144 (206)
T ss_dssp TTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT-
T ss_pred HHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHHHcC-
Confidence 988888888999999999999986543332 22333333 2466 889999999976322111 13334444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 145 ----~~~~~~Sa~~g~------------------gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 145 ----MPFLETSALDST------------------NVEDAFLTMARQI 169 (206)
T ss_dssp ----CCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 7777777776543
No 94
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=1.3e-18 Score=154.22 Aligned_cols=155 Identities=21% Similarity=0.153 Sum_probs=89.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKN 164 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~ 164 (482)
.++|+++|++|+|||||+++|++... .......|.+.. ....+......+.+|||||+.+|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED---------------GPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc---------------cCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 57999999999999999999964311 011112233332 22233334557889999999999888
Q ss_pred HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 165 MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 165 ~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
....+..+|++++|+|+++..... ....+..+.. .++| +++|+||+|+.+..+... .+...+....+
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSREVSV---DEGRACAVVFD---- 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCCSCH---HHHHHHHHHTT----
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccccCH---HHHHHHHHHhC----
Confidence 888889999999999998754322 2233333333 3677 889999999976322111 12233344333
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++++||++|. |+.++++.|.+.
T Consensus 138 -~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 161 (166)
T 3q72_A 138 -CKFIETSAALHH------------------NVQALFEGVVRQ 161 (166)
T ss_dssp -CEEEECBGGGTB------------------SHHHHHHHHHHH
T ss_pred -CcEEEeccCCCC------------------CHHHHHHHHHHH
Confidence 689999999998 889999888764
No 95
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.77 E-value=1.2e-18 Score=157.68 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=100.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|++|+|||||+++|++..... ...+.+.+.....+..++ ..+.||||||+++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVD-----------------EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCC-----------------CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCC-----------------CCCCCchheEEEEEEECCcEEEEEEEECCCcHHH
Confidence 46899999999999999999998642100 001111122222233334 45778999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+.....+ +..++.+.++
T Consensus 66 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~----~~~~~~~~~~- 139 (189)
T 4dsu_A 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRTVDTK----QAQDLARSYG- 139 (189)
T ss_dssp CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCSSCHH----HHHHHHHHHT-
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccccCHH----HHHHHHHHcC-
Confidence 8888888889999999999997543222 222222322 3677 899999999975322121 2333444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 140 ----~~~~~~Sa~~g~------------------gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 ----IPFIETSAKTRQ------------------GVDDAFYTLVREI 164 (189)
T ss_dssp ----CCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999998 7888888876644
No 96
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=3.1e-18 Score=157.37 Aligned_cols=160 Identities=18% Similarity=0.155 Sum_probs=107.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
..++|+++|+.|+|||||+++|++.... .+...+++.+. ....++.....+.||||||+++|.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP----------------EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD 87 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC----------------SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC----------------cccCCcccceEEEEEEECCEEEEEEEEECCCchhHH
Confidence 3579999999999999999999864110 00111111111 112222223578899999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHHHHH
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELEVRE 229 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~i~~ 229 (482)
......+..+|++++|+|+++....+. ...+..+... ++| +++|+||+|+.+.....+.+ .++..+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCccchhhhcccccCcCCHHHHHH
Confidence 888888899999999999987543322 2334444444 778 89999999998754332221 123444
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+.+.+++ .+++++||++|. |+.++++.|.+.
T Consensus 167 ~~~~~~~----~~~~~~SA~~g~------------------gi~~l~~~i~~~ 197 (201)
T 2gco_A 167 MANRISA----FGYLECSAKTKE------------------GVREVFEMATRA 197 (201)
T ss_dssp HHHHTTC----SEEEECCTTTCT------------------THHHHHHHHHHH
T ss_pred HHHhCCC----cEEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 5555443 489999999998 889999888763
No 97
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=1.3e-18 Score=156.95 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=104.2
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
..+.++|+++|+.|+|||||+++|++.... .+....+.... ...+..++ ..+.+|||||++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~----------------~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV----------------DDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC----------------SCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCCcccee-EEEEEeCCcEEEEEEEECCCch
Confidence 456789999999999999999999853100 00111111111 22233344 346679999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHH----HHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILL----AKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~----~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+|.......+..+|++++|+|+++....+. .+.+.. ....++| +++|+||+|+.+...... ++..++.+.+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~v~~---~~~~~~~~~~ 153 (183)
T 3kkq_A 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRKVTR---DQGKEMATKY 153 (183)
T ss_dssp GGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCCSCH---HHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccCcCH---HHHHHHHHHh
Confidence 998878788889999999999998533222 222222 2234677 889999999875322111 1344455544
Q ss_pred CCCCCCccEEEcchh-hhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSAL-LALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~-~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+ ++++++||+ +|. |+.++++.|.+.
T Consensus 154 ~-----~~~~~~Sa~~~~~------------------~v~~l~~~l~~~ 179 (183)
T 3kkq_A 154 N-----IPYIETSAKDPPL------------------NVDKTFHDLVRV 179 (183)
T ss_dssp T-----CCEEEEBCSSSCB------------------SHHHHHHHHHHH
T ss_pred C-----CeEEEeccCCCCC------------------CHHHHHHHHHHH
Confidence 4 679999999 887 888998888764
No 98
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.77 E-value=5.3e-19 Score=160.64 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=109.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|+.|+|||||+++|++..... ......|.+.......+......+.||||||+.+|..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 86 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP--------------AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT 86 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--------------SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--------------CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh
Confidence 35799999999999999999998641100 0011223344333344444456789999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGD 239 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 239 (482)
.+...+..+|++|+|+|+++....+ ..+.+..+... ++| +++|+||+|+.+...... ++.+++.+.++
T Consensus 87 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~---- 158 (189)
T 2gf9_A 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDERVVPA---EDGRRLADDLG---- 158 (189)
T ss_dssp SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT----
T ss_pred hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccCCCH---HHHHHHHHHcC----
Confidence 8888889999999999998754332 23344444443 566 899999999975322111 13444455444
Q ss_pred CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 240 DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 240 ~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 159 -~~~~~~Sa~~g~------------------gi~~l~~~l~~~i 183 (189)
T 2gf9_A 159 -FEFFEASAKENI------------------NVKQVFERLVDVI 183 (189)
T ss_dssp -CEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8888888887654
No 99
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=1.4e-18 Score=156.36 Aligned_cols=156 Identities=19% Similarity=0.161 Sum_probs=102.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+++|++.... . ......+.+. ...+..++ ..+.||||||+++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~------------~--~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV------------D--SYDPTIENTF---TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC------------S--CCCTTCCEEE---EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC------------C--CCCCCccccE---EEEEEECCEEEEEEEEeCCCchhh
Confidence 4689999999999999999999853100 0 0001111122 22233344 56789999999998
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHH-HH----HHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKE-HI----LLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l----~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......+..+|++++|+|+++........ .+ ..+...++| +++|+||+|+.+...... ++..++.+.++
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 142 (181)
T 3t5g_A 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVISY---EEGKALAESWN- 142 (181)
T ss_dssp CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCSCH---HHHHHHHHHTT-
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcceecH---HHHHHHHHHhC-
Confidence 766667788999999999998743322222 11 222223677 889999999965322111 24445555544
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 143 ----~~~~~~Sa~~~~------------------~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 143 ----AAFLESSAKENQ------------------TAVDVFRRIILEA 167 (181)
T ss_dssp ----CEEEECCTTSHH------------------HHHHHHHHHHHHH
T ss_pred ----CcEEEEecCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8888888887755
No 100
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=5.7e-19 Score=170.33 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=110.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|++|+|||||+|+|++... ......|+|++.....+.+.+..+.||||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 467999999999999999999986421 2224567788888888888899999999999877633
Q ss_pred ------HHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcC-CCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 164 ------NMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVG-VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 164 ------~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~-ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
.....+ ..+|++++|+|++++ ......+..+...+ +| +++|+||+|+........ ....+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~----~~~~l~~~l 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKKKGAKI----DIKKMRKEL 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHHHTCCC----CHHHHHHHH
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcccccHH----HHHHHHHHc
Confidence 122222 579999999999874 34455555666677 88 889999999764221111 122223333
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+ +|++++||++|. |+.++++.+...+
T Consensus 139 g-----~~~~~~Sa~~g~------------------gi~~l~~~i~~~~ 164 (271)
T 3k53_A 139 G-----VPVIPTNAKKGE------------------GVEELKRMIALMA 164 (271)
T ss_dssp S-----SCEEECBGGGTB------------------THHHHHHHHHHHH
T ss_pred C-----CcEEEEEeCCCC------------------CHHHHHHHHHHHH
Confidence 3 689999999998 7777777776643
No 101
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=2.2e-18 Score=155.55 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=105.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
..+.++|+++|+.|+|||||+++|++.... .. ....+.......+..++ ..+.||||||+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFV----------------ED-YEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCC----------------CS-CCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCC----------------Cc-CCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 345789999999999999999999864100 00 00111111112233333 478999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+|...+...+..+|++++|+|+++....+. ...+..+.. .++| +++|+||+|+.+..+.. .+++.++++.+
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 153 (187)
T 2a9k_A 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVS---VEEAKNRAEQW 153 (187)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGGCCSC---HHHHHHHHHHT
T ss_pred ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccC---HHHHHHHHHHc
Confidence 999888888999999999999987543222 222222222 2677 89999999986532211 12444555554
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+ ++++++||++|. |+.++++.|.+.+
T Consensus 154 ~-----~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 179 (187)
T 2a9k_A 154 N-----VNYVETSAKTRA------------------NVDKVFFDLMREI 179 (187)
T ss_dssp T-----CEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred C-----CeEEEeCCCCCC------------------CHHHHHHHHHHHH
Confidence 4 589999999998 8888888887654
No 102
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.7e-18 Score=176.90 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=112.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh-----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD----- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~----- 160 (482)
++|+++|.+|+|||||+|+|++... ...+...|+|.+.....+++.+..+.+|||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~---------------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK---------------AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---------------ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 5799999999999999999986421 11234568888888888888999999999999653
Q ss_pred ----hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHH-HHHHhhcC
Q 011581 161 ----YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEV-RELLSSYE 235 (482)
Q Consensus 161 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i-~~~l~~~~ 235 (482)
+...+..++..+|++|+|+|+.++......+...+++..++| +++|+||+|+.+. .. .+. .++. .++
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D~~~~--~~----~~~~~~~~-~lg 138 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAENLRE--FE----REVKPELY-SLG 138 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCSHHH--HH----HHTHHHHG-GGS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCCccc--cH----HHHHHHHH-hcC
Confidence 455667778999999999999999988887777778878898 8899999998532 11 122 2332 344
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+ .+++++||++|. |+.+|++.+.+.++
T Consensus 139 ~----~~~~~iSA~~g~------------------gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 139 F----GEPIPVSAEHNI------------------NLDTMLETIIKKLE 165 (439)
T ss_dssp S----CSCEECBTTTTB------------------SHHHHHHHHHHHHH
T ss_pred C----CCEEEEeccCCC------------------CHHHHHHHHHHhcc
Confidence 3 257899999998 88999999877664
No 103
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.77 E-value=5.2e-18 Score=153.21 Aligned_cols=159 Identities=22% Similarity=0.162 Sum_probs=108.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++.. + .......|.+ ...+..++..+.+|||||+++|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~-------~--------~~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED-------I--------SHITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC-------C--------EEEEEETTEE----EEEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC-------C--------CcccCcCCeE----EEEEEECCEEEEEEECCCCHHHH
Confidence 457899999999999999999997420 0 0011112222 22344568889999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHH-H---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLA-K---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~-~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+..++..+|++++|+|+++..... ..+.+..+ . ..++| +++|+||+|+.+.... + ++.+.+......
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 148 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAPA-S----EIAEGLNLHTIR 148 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccCCCH-H----HHHHHhCchhcc
Confidence 88888899999999999998754332 23333322 2 23677 8999999999763211 1 222222211112
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...++++++||++|. |+.+++++|.+.+.
T Consensus 149 ~~~~~~~~~Sa~~g~------------------gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 149 DRVWQIQSCSALTGE------------------GVQDGMNWVCKNVN 177 (181)
T ss_dssp SSCEEEEECCTTTCT------------------THHHHHHHHHHTC-
T ss_pred CCceEEEEccCCCCC------------------CHHHHHHHHHHHHH
Confidence 235789999999998 89999999988664
No 104
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=161.28 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=105.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|+.|+|||||+++|++.... .......|.+.......++.....+.||||||+++|.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 91 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR--------------ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR 91 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTCH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC--------------ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh
Confidence 45689999999999999999999864100 0011122333333333444344678999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH---cCCCcEEEEEecCCCCChHHH--HHH-HHHHHHHHHhhcC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ---VGVPNMVVFLNKQDQVDDEEL--LQL-VELEVRELLSSYE 235 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~---~~ip~iivviNK~D~~~~~~~--~~~-i~~~i~~~l~~~~ 235 (482)
..+...+..+|++|+|+|+++....+.. +.+..+.. .++| +++|+||+|+.+.... ... ..++..++.+..+
T Consensus 92 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~ 170 (199)
T 2p5s_A 92 SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG 170 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccccccccccCHHHHHHHHHHcC
Confidence 9888889999999999999876543332 23333333 2677 8999999998632110 000 0123344444443
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 171 -----~~~~~~SA~~g~------------------gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 -----ALFCETSAKDGS------------------NIVEAVLHLAREV 195 (199)
T ss_dssp -----CEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred -----CeEEEeeCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8899999887754
No 105
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=6.9e-19 Score=181.18 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=108.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch-----
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA----- 159 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~----- 159 (482)
.++|+++|++|+|||||+|+|++.. ....+...|+|.+.....+++.+..+.||||||+.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~---------------~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~ 67 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGER---------------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP 67 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEE---------------CC-----------CEEEECTTCSSCCEEEC---------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---------------ceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh
Confidence 3689999999999999999997531 11223456888888888888888999999999985
Q ss_pred ---hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 160 ---DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 160 ---~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.+...+..++..+|++|+|+|+.++......+...+++..++| +++|+||+|+..... ++.++. .+++
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~~~~~-------~~~~~~-~lg~ 138 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIYDFY-SLGF 138 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC------------CCCSSG-GGSS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCccchh-------hHHHHH-HcCC
Confidence 6667777788999999999999999998888888888888888 889999999875321 111222 2333
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
-+++++||.+|. |+.+|++++.+.++
T Consensus 139 ----~~~~~iSA~~g~------------------gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 139 ----GEPYPISGTHGL------------------GLGDLLDAVAEHFK 164 (436)
T ss_dssp ----CCCEECBTTTTB------------------THHHHHHHHHHTGG
T ss_pred ----CCeEEEeCcCCC------------------ChHHHHHHHHHhcC
Confidence 267999999998 89999999988775
No 106
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=8.7e-19 Score=162.07 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=104.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|++|+|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+.+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF----------------NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC----------------CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC----------------CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3468999999999999999999985311 111222333344444444455 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++....+. .+.+..+... ++| +++|+||+|+.......+ +..++.+.++
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~----~~~~~~~~~~- 155 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETRVVTAD----QGEALAKELG- 155 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTCSSCCSCHH----HHHHHHHHHT-
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcccccCHH----HHHHHHHHcC-
Confidence 98777788889999999999987543222 3333334332 566 899999999953211111 2333444444
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 156 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 180 (213)
T 3cph_A 156 ----IPFIESSAKNDD------------------NVNEIFFTLAKLI 180 (213)
T ss_dssp ----CCEEECBTTTTB------------------SSHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999997 6677777666543
No 107
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=4.7e-19 Score=169.47 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=110.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|++|+|||||+|+|++... ......|+|++.....+...+..+.||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~----------------~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ----------------YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE----------------EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 357899999999999999999986421 1123457888888888888889999999999876632
Q ss_pred ------HHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 164 ------NMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 164 ------~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
.....+ ..+|++++|+|+++.. .....+..+...++| +++|+||+|+....... .+..++.+.++
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~~i~----~~~~~l~~~lg 140 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKK-VILAMTAIDEAKKTGMK----IDRYELQKHLG 140 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCC-EEEEEECHHHHHHTTCC----BCHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCC-EEEEEECcCCCCccchH----HHHHHHHHHcC
Confidence 112222 5799999999998743 233455566677899 89999999985421111 12233333434
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+|++++||++|. |+.+|++.+.+..
T Consensus 141 -----~~vi~~SA~~g~------------------gi~el~~~i~~~~ 165 (258)
T 3a1s_A 141 -----IPVVFTSSVTGE------------------GLEELKEKIVEYA 165 (258)
T ss_dssp -----SCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCCc------------------CHHHHHHHHHHHh
Confidence 689999999998 8888888887754
No 108
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=7.8e-19 Score=159.88 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=112.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++.... .......|.+.......+......+.||||||+++|.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFT--------------PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR 86 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTC--------------CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCC--------------cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 34689999999999999999999864210 0011122445555555556677889999999999999
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
......+..+|++|+|+|+++....+ ..+.+..+.. .++| +++|+||+|+.+...... .+...+.+.++
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 159 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDMEEERVVPT---EKGQLLAEQLG--- 159 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT---
T ss_pred HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHHHcC---
Confidence 99999999999999999998744322 2333344444 3566 889999999865322111 13334444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 160 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 --FDFFEASAKENI------------------SVRQAFERLVDAI 184 (191)
T ss_dssp --CEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred --CeEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8888888877643
No 109
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=6.4e-19 Score=163.76 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=104.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeee--eEeecC----------CeEE
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT--VEYETE----------NRHY 150 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~--~~~~~~----------~~~i 150 (482)
...++|+++|+.|+|||||+++|++.. ...+....++.+... ..+... ...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK----------------FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC----------------CCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC----------------CCcCCCCceeEEEEEEEEEECCccccccccCceeEEE
Confidence 346899999999999999999998531 001111112222222 223222 4678
Q ss_pred EEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHH-HHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHH
Q 011581 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVEL 225 (482)
Q Consensus 151 ~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~-l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~ 225 (482)
.||||||+++|...+...+..+|++|+|+|+++....+.... +..+.. .++| +++|+||+|+.+..+... .
T Consensus 87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v~~---~ 162 (217)
T 2f7s_A 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVNE---R 162 (217)
T ss_dssp EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCGGGCCSCH---H
T ss_pred EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccccccccCH---H
Confidence 999999999999988899999999999999987544333322 222221 3456 899999999975322111 2
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++.++.+.++ ++++++||++|. |+.+++++|.+.+
T Consensus 163 ~~~~~~~~~~-----~~~~~~Sa~~g~------------------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 163 QARELADKYG-----IPYFETSAATGQ------------------NVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHHTT-----CCEEEEBTTTTB------------------THHHHHHHHHHHH
T ss_pred HHHHHHHHCC-----CcEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 3444555544 579999999998 7777777776543
No 110
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.1e-18 Score=156.46 Aligned_cols=161 Identities=15% Similarity=0.135 Sum_probs=106.5
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
.....++|+++|++|+|||||+++|++.... +. .....+.+. .....++.....+.||||||+.+
T Consensus 4 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~------------~~--~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 4 EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR------------DT--YIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHSCCC------------CT--TSCCCCEEE-EEEEEETTEEEEEEEEECCGGGS
T ss_pred cCCCeeEEEEECCCCCcHHHHHHHHHcCCCC------------Cc--ccCccccce-eEEEEECCEEEEEEEEeCCChHH
Confidence 3456789999999999999999999863110 00 000011111 11122233345789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH-----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
|...+...+..+|++++|+|+++...... ...+..+.. .++| +++|+||+|+.+.....+ +...+...+
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~----~~~~~~~~~ 143 (199)
T 2gf0_A 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQREVDTR----EAQAVAQEW 143 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSSCSSCHH----HHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCCccccCHH----HHHHHHHHh
Confidence 98888888899999999999987433222 222322322 2677 899999999975221111 233334443
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+ ++++++||++|. |+.+++++|.+.+.
T Consensus 144 ~-----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 144 K-----CAFMETSAKMNY------------------NVKELFQELLTLET 170 (199)
T ss_dssp T-----CEEEECBTTTTB------------------SHHHHHHHHHHHCS
T ss_pred C-----CeEEEEecCCCC------------------CHHHHHHHHHHHHh
Confidence 3 589999999998 89999999988664
No 111
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=1e-18 Score=159.15 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=105.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++.... .......|.+.......++.....+.||||||+++|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 84 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFR 84 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCC--------------C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC--------------CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhh
Confidence 34689999999999999999999863110 0001112333333333333233578999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...+..+|++|+|+|+++....+. ...+..+... ++| +++|+||+|+.+..+... ++..++.+..+
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~--- 157 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVKR---EEGEAFAREHG--- 157 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT---
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCCccccCH---HHHHHHHHHcC---
Confidence 777778889999999999987543332 3333344332 566 889999999965322111 13344444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 158 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 182 (191)
T 2a5j_A 158 --LIFMETSAKTAC------------------NVEEAFINTAKEI 182 (191)
T ss_dssp --CEEEEECTTTCT------------------THHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8888888876643
No 112
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.76 E-value=4.1e-18 Score=150.23 Aligned_cols=156 Identities=21% Similarity=0.153 Sum_probs=103.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCcee-eeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITI-NTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti-~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..+|+++|+.|+|||||+++|++..... +....... ......+......+.+|||||+.+|.
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~ 65 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVD----------------ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCS----------------CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCcc----------------ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 35789999999999999999998641100 00000111 11112222233567899999999988
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc----CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~----~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
......+..+|++++|+|+++..... ..+.+..+... ++| +++|+||+|+.+..... .+..++.+.++
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~-- 138 (166)
T 2ce2_X 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAARTVES----RQAQDLARSYG-- 138 (166)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCH----HHHHHHHHHHT--
T ss_pred HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcccCH----HHHHHHHHHcC--
Confidence 88888888999999999998754322 23333333332 677 88999999987622111 13344444444
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 139 ---~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 139 ---IPYIETSAKTRQ------------------GVEDAFYTLVREI 163 (166)
T ss_dssp ---CCEEEECTTTCT------------------THHHHHHHHHHHH
T ss_pred ---CeEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999998 8899998887643
No 113
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.76 E-value=8e-19 Score=159.91 Aligned_cols=159 Identities=19% Similarity=0.113 Sum_probs=107.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|++|+|||||+++|++...... .....|.+.......+......+.||||||+.+|.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD--------------SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR 88 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS--------------CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh
Confidence 4468999999999999999999986411000 01112333333333444445678999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
..+...+..+|++|+|+|+++...... ...+..+... ++| +++|+||+|+.+..+... .+...+.+..+
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~~--- 161 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLSQAREVPT---EEARMFAENNG--- 161 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT---
T ss_pred hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCcccccccCH---HHHHHHHHHcC---
Confidence 888888899999999999987544322 3333344332 566 889999999975322111 13344444433
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++++||++|. |+.++++.|.+.
T Consensus 162 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~ 185 (193)
T 2oil_A 162 --LLFLETSALDST------------------NVELAFETVLKE 185 (193)
T ss_dssp --CEEEEECTTTCT------------------THHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 689999999998 888888887654
No 114
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=4e-18 Score=155.36 Aligned_cols=160 Identities=17% Similarity=0.068 Sum_probs=108.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+++|++...... . ....+... ...+..++ ..+.||||||+++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~------------~--~~t~~~~~---~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEE------------Y--VPTVFDHY---AVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCS------------C--CCSSCCCE---EEEEESSSCEEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC------------C--CCccccee---EEEEEECCEEEEEEEEECCCCcch
Confidence 457999999999999999999986411000 0 00001111 11233333 67889999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~i~ 228 (482)
...+...+..+|++|+|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+ .++..
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 88888888999999999999886543332 334445444 777 89999999998743221111 12444
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++.+.+++ .+++++||++|. |+.++++.|.+.+
T Consensus 159 ~~~~~~~~----~~~~~~Sa~~g~------------------gi~~l~~~l~~~i 191 (194)
T 2atx_A 159 KLAKEIGA----CCYVECSALTQK------------------GLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHTC----SCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHHHHcCC----cEEEEeeCCCCC------------------CHHHHHHHHHHHH
Confidence 55555543 489999999998 8999999887643
No 115
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.76 E-value=2.9e-18 Score=157.34 Aligned_cols=159 Identities=20% Similarity=0.218 Sum_probs=104.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
..+..+|+++|++|+|||||+++|.+.... + ...|+......+..++..+.+|||||+++|
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-----------------~--~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-----------------Q--HVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------------c--cCCCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 345679999999999999999999743110 0 011222223345566789999999999998
Q ss_pred HHHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC-
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE- 235 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~- 235 (482)
...+...++.+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+... . +++.+.+....
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~~~~~~~ 156 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDRPEAIS-E----ERLREMFGLYGQ 156 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTCCC-H----HHHHHHHTCTTT
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCccccCC-H----HHHHHHhCcccc
Confidence 8777778889999999999988643 223333333322 3677 899999999975211 1 13344443221
Q ss_pred --------CC---CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 --------FP---GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 --------~~---~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+. ....+++++||++|. |+++++++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~SA~~g~------------------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 157 TTGKGSVSLKELNARPLEVFMCSVLKRQ------------------GYGEGFRWMAQYI 197 (198)
T ss_dssp CCCSSCCCTTTCCSCCEEEEECBTTTTB------------------SHHHHHHHHHTTC
T ss_pred cccccccccccccCceEEEEEEECCCCC------------------CHHHHHHHHHHhc
Confidence 11 134789999999998 8999999987653
No 116
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.76 E-value=2.7e-18 Score=164.41 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=110.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhh-hcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE-RARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e-~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
....++|+++|++|+|||||+++|++.... ... ...++|.......+.+.+..+.||||||+.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAF---------------ESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCS---------------CCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCC
Confidence 345689999999999999999999854110 011 1122566655556677889999999999866
Q ss_pred h-----------HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc-----CCCcEEEEEe-cCCCCChHHHHHHH
Q 011581 161 Y-----------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-----GVPNMVVFLN-KQDQVDDEELLQLV 223 (482)
Q Consensus 161 ~-----------~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-----~ip~iivviN-K~D~~~~~~~~~~i 223 (482)
+ ...+...++.+|++|+|+|+.. ...+....+..+... +.| .++++| |+|+... ...+.+
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~-~i~vv~nK~Dl~~~-~~~~~i 160 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGH-TIVLFTHKEDLNGG-SLMDYM 160 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGG-EEEEEECGGGGTTC-CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhcc-EEEEEEcccccCCc-cHHHHH
Confidence 4 3333446788999999999985 667777776666655 566 566666 9999853 222212
Q ss_pred H----HHHHHHHhhcCCCCC-CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 224 E----LEVRELLSSYEFPGD-DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 224 ~----~~i~~~l~~~~~~~~-~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
. .++.++++.++.... ..+ +++||++|. |+.+|++.|.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~------------------gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 161 HDSDNKALSKLVAACGGRICAFNN-RAEGSNQDD------------------QVKELMDCIEDLLM 207 (260)
T ss_dssp HHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHhCCeEEEecC-cccccccHH------------------HHHHHHHHHHHHHH
Confidence 1 234445555442100 012 789999998 88888888877653
No 117
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=156.72 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=105.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
..+.++|+++|+.|+|||||+++|++.... . ...+.+.......+..++ ..+.||||||+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~----------------~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV----------------E-DYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC----------------T-TCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC----------------C-CCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 456789999999999999999999864210 0 000111111122233333 478899999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+|...+...+..+|++++|+|+++...... ...+..+.. .++| +++|+||+|+.+..+.. .+++.++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 149 (206)
T 2bov_A 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLEDKRQVS---VEEAKNRAEQW 149 (206)
T ss_dssp CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGGGCCSC---HHHHHHHHHHH
T ss_pred hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcccccccc---HHHHHHHHHHh
Confidence 999888888899999999999987543222 222223322 2677 89999999997532211 12344445444
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+ ++++++||++|. |+.+++++|.+.+
T Consensus 150 ~-----~~~~~~Sa~~g~------------------gi~~l~~~l~~~i 175 (206)
T 2bov_A 150 N-----VNYVETSAKTRA------------------NVDKVFFDLMREI 175 (206)
T ss_dssp T-----CEEEEECTTTCT------------------THHHHHHHHHHHH
T ss_pred C-----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 3 579999999998 7888888776644
No 118
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=3.2e-18 Score=156.17 Aligned_cols=158 Identities=20% Similarity=0.179 Sum_probs=103.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|++|+|||||+++|++.. +. +.. .|+......++..+..+.||||||+++|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~-------~~----------~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE-------IV----------TTI--PTIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC-------CE----------EEE--EETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC-------cc----------ccC--CcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 456899999999999999999996320 00 001 12223334455678899999999999987
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++|+|+|+++....+ ..+.+..+.. .++| +++|+||+|+.+... .+ ++.+.+......
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~ 161 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMP-VS----ELTDKLGLQHLR 161 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCC-HH----HHHHHTTGGGCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCC-HH----HHHHHhCccccc
Confidence 77777888999999999998864322 2333333322 2666 899999999976321 11 222222211122
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
...++++++||++|. |++++++.|.+.+
T Consensus 162 ~~~~~~~~~SA~~g~------------------gi~~l~~~l~~~i 189 (192)
T 2b6h_A 162 SRTWYVQATCATQGT------------------GLYDGLDWLSHEL 189 (192)
T ss_dssp SCCEEEEECBTTTTB------------------THHHHHHHHHHHT
T ss_pred CCceEEEECcCCCcC------------------CHHHHHHHHHHHH
Confidence 235789999999998 8999999998765
No 119
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.76 E-value=9.3e-19 Score=160.79 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=103.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++.... .+...+++.+.....+..++ ..+.||||||+.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK----------------QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEETTEEEEEEEECCTTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC----------------ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh
Confidence 45689999999999999999999853211 11122223233233333344 6789999999998
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++....+. ...+..+.. .++| +++|+||+|+.+...... .+..++.+..+
T Consensus 87 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~- 161 (200)
T 2o52_A 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLDPEREVTF---LEASRFAQENE- 161 (200)
T ss_dssp HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHTT-
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccccCH---HHHHHHHHHcC-
Confidence 87777778889999999999998554333 222333332 3666 899999999864221110 13344444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 162 ----~~~~~~SA~~g~------------------gi~~l~~~l~~~i 186 (200)
T 2o52_A 162 ----LMFLETSALTGE------------------NVEEAFLKCARTI 186 (200)
T ss_dssp ----CEEEEECTTTCT------------------THHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 7888888776643
No 120
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=1.3e-18 Score=156.25 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=103.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++... ..+....+..... ..+..++ ..+.||||||+.+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~----------------~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF----------------VSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC----------------CSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC----------------ccccCCCcCceEE-EEEEECCEEEEEEEEECCCchh
Confidence 4568999999999999999999986410 0001111111111 2233343 5788999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHH----HHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLA----KQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|.......+..+|++++|+|+++..... ....+..+ ...++| +++|+||+|+.+..+... .+...+....
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~- 144 (181)
T 2fn4_A 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQRQVPR---SEASAFGASH- 144 (181)
T ss_dssp TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHT-
T ss_pred hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccCH---HHHHHHHHHc-
Confidence 8777777788899999999998743322 22222222 223677 899999999975322111 1233333333
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++++||++|. |+.++++.|.+.+
T Consensus 145 ----~~~~~~~Sa~~~~------------------gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 145 ----HVAYFEASAKLRL------------------NVDEAFEQLVRAV 170 (181)
T ss_dssp ----TCEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ----CCeEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 3689999999998 8888888887654
No 121
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.76 E-value=3.8e-18 Score=154.91 Aligned_cols=156 Identities=19% Similarity=0.119 Sum_probs=94.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
++.++|+++|..|+|||||+++|++.... . + ..+.+.......+..++ ..+.||||||+.+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~------------~----~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV------------D----E-YDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC------------S----C-CCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc------------c----c-cCCccceEEEEEEEECCEEEEEEEEECCChHH
Confidence 34589999999999999999999864110 0 0 00111111112233333 5688999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
|...+...+..+|++++|+|+++....+.. ..+..+.. .++| +++|+||+|+.+..... +++.++.+.++
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~ 156 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRTVDT----KQAHELAKSYG 156 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCCSCH----HHHHHHHHHHT
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCcccCCH----HHHHHHHHHcC
Confidence 988888889999999999999876543332 22233332 2677 89999999987622111 23444444444
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.+++++|.+.+
T Consensus 157 -----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 181 (190)
T 3con_A 157 -----IPFIETSAKTRQ------------------GVEDAFYTLVREI 181 (190)
T ss_dssp -----CCEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred -----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 579999999998 8888888887644
No 122
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.76 E-value=1.3e-18 Score=156.61 Aligned_cols=163 Identities=20% Similarity=0.136 Sum_probs=102.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
+..++|+++|+.|+|||||+++|++.... .+....+.... ....+......+.||||||+++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP----------------TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY 69 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CBCCCC-------CEEECCCC-CTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh
Confidence 34689999999999999999999854100 00000000000 01112223445679999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHH-------HHHHHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQL-------VELEVREL 230 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~-------i~~~i~~~ 230 (482)
...+...+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+....... ..++..++
T Consensus 70 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 70 NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 88888888999999999999875543332 233344432 677 8999999998764332100 11234455
Q ss_pred HhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 231 LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+.+++ .+++++||++|. |+.++++.|.+.+.
T Consensus 149 ~~~~~~----~~~~~~Sa~~~~------------------gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 149 KKLIGA----PAYIECSSKSQE------------------NVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHTC----SEEEECCTTTCT------------------THHHHHHHHHHHHS
T ss_pred HHHcCC----CEEEEEECCCCC------------------CHHHHHHHHHHHHh
Confidence 555442 489999999998 89999999877543
No 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.76 E-value=1.6e-18 Score=158.12 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=107.4
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee-eeEeecCCeEEEEEeCCCch
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA-TVEYETENRHYAHVDCPGHA 159 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~-~~~~~~~~~~i~liDtPG~~ 159 (482)
..+..++|+++|+.|+|||||+++|++... ..+....+..... ...+......+.||||||++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEI----------------PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCC----------------CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCC----------------CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 345678999999999999999999986421 0001111111111 11222233456899999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
+|.......++.+|++|+|+|+++...... ...+..+... ++| +++|+||+|+.+..... ...++..++.+.++
T Consensus 83 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~ 160 (194)
T 3reg_A 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDLRKDGSDD-VTKQEGDDLCQKLG 160 (194)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGGCCTTTTC-CCHHHHHHHHHHHT
T ss_pred HHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccCCCCc-ccHHHHHHHHHhcC
Confidence 998888888999999999999998654333 2333334333 566 88999999997531110 01124455555555
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+ .+++++||++|. |+.++++.|.+.+
T Consensus 161 ~----~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 186 (194)
T 3reg_A 161 C----VAYIEASSVAKI------------------GLNEVFEKSVDCI 186 (194)
T ss_dssp C----SCEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred C----CEEEEeecCCCC------------------CHHHHHHHHHHHH
Confidence 3 239999999998 8899999887754
No 124
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.7e-18 Score=157.64 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=107.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
+.++|+++|+.|+|||||+++|++.... .......|.+.......++.....+.||||||+++|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 79 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFD--------------PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh
Confidence 4589999999999999999999864110 00011123333333344444456789999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.+...+..+|++|+|+|+++....... ..+..+.. .++| +++|+||+|+....... ++..++.+..+
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~--- 151 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKENREVDR----NEGLKFARKHS--- 151 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSSCCSCH----HHHHHHHHHTT---
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcccccCH----HHHHHHHHHcC---
Confidence 888888999999999999875443332 23333333 2456 88999999995421111 13344444443
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.+.
T Consensus 152 --~~~~~~Sa~~~~------------------gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 152 --MLFIEASAKTCD------------------GVQCAFEELVEKII 177 (195)
T ss_dssp --CEEEECCTTTCT------------------THHHHHHHHHHHHH
T ss_pred --CEEEEecCCCCC------------------CHHHHHHHHHHHHH
Confidence 679999999998 88888888877553
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.76 E-value=1.4e-18 Score=179.72 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=94.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|++|+|||||+|+|++.. ........|+|.+.....+..++..+.||||||+.++..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 35789999999999999999998641 112233457788777777778899999999999987643
Q ss_pred H--------HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc-CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 164 N--------MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV-GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 164 ~--------~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~-~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
. +...+..+|++|+|+|++++...+ ..+...++..+ ++| +++|+||+|+.+...... +++.+.
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~p-iIvV~NK~Dl~~~~~~~~---~~l~~~--- 369 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK-FLTVANKLDRAANADALI---RAIADG--- 369 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSE-EEEEEECTTSCTTTHHHH---HHHHHH---
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCC-EEEEEECcCCCCccchhH---HHHHhc---
Confidence 2 344678999999999999987652 11222233333 566 899999999987543211 122221
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++ .+++++||++|. |+++|+++|.+.+.
T Consensus 370 -~~----~~~i~vSAktg~------------------GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 370 -TG----TEVIGISALNGD------------------GIDTLKQHMGDLVK 397 (476)
T ss_dssp -HT----SCEEECBTTTTB------------------SHHHHHHHHTHHHH
T ss_pred -CC----CceEEEEECCCC------------------CHHHHHHHHHHHHh
Confidence 21 579999999998 88888888887664
No 126
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.76 E-value=6e-19 Score=164.04 Aligned_cols=161 Identities=18% Similarity=0.092 Sum_probs=102.5
Q ss_pred hccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CC--eEEEEEeCC
Q 011581 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-EN--RHYAHVDCP 156 (482)
Q Consensus 80 ~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~--~~i~liDtP 156 (482)
.++...++|+++|+.|+|||||+++|++.. .................+.. .+ ..+.|||||
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~ 69 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGR----------------FEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCS----------------TTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEEC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCC----------------CCCCCCCccceeeEEEEEEeCCCcEEEEEEEecC
Confidence 345567899999999999999999997431 00111111122222222222 22 678999999
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
|+++|.......+..+|++|+|+|++++...+... .+..+.. .++| +++|+||+|+.+..+... .+..++.+
T Consensus 70 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~ 145 (218)
T 4djt_A 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDIKNRQKISK---KLVMEVLK 145 (218)
T ss_dssp SGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTCC----CCH---HHHHHHTT
T ss_pred CchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCccccccCH---HHHHHHHH
Confidence 99998777777788999999999999865544432 2233322 3677 889999999976432221 23344444
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.. .++++++||++|. |+.++++.|.+.+
T Consensus 146 ~~-----~~~~~~~Sa~~g~------------------gv~~l~~~l~~~~ 173 (218)
T 4djt_A 146 GK-----NYEYFEISAKTAH------------------NFGLPFLHLARIF 173 (218)
T ss_dssp TC-----CCEEEEEBTTTTB------------------TTTHHHHHHHHHH
T ss_pred Hc-----CCcEEEEecCCCC------------------CHHHHHHHHHHHH
Confidence 33 3689999999998 7777777776644
No 127
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.76 E-value=7.8e-18 Score=156.34 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=93.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++.... .+....+ .......+..+ ...+.||||||+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~----------------~~~~~t~-~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFP----------------ESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-----------------------CCCC-CEEEEEEEEETTEEEEEEEEEC-----
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCC----------------CCCCCcc-ceeEEEEEEECCEEEEEEEEECCCchh
Confidence 45689999999999999999999853110 0001111 11111222333 34788999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHHH
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELEV 227 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~i 227 (482)
|...+...+..+|++|+|+|+++....+.. ..+..+... ++| +++|+||+|+.......+.+ .++.
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ----------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred hhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 988888888999999999999875443332 233333332 677 89999999998754332221 1234
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++.+.+++ .+++++||++|. |+.++++.|.+.+
T Consensus 174 ~~~~~~~~~----~~~~~~SA~~g~------------------gi~el~~~l~~~~ 207 (214)
T 2j1l_A 174 QEMARSVGA----VAYLECSARLHD------------------NVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHHTTC----SEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred HHHHHhcCC----CEEEEecCCCCC------------------CHHHHHHHHHHHH
Confidence 555555542 489999999998 8889998887654
No 128
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=1.8e-18 Score=155.81 Aligned_cols=158 Identities=23% Similarity=0.189 Sum_probs=105.4
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|+.|+|||||+++|++... . ....|+......+..++..+.+|||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-----------------~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-----------------V--TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-----------------E--EECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-----------------C--ccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 5678999999999999999999974210 0 01112222223345567899999999999988
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++++|+|+++... ....+.+..+.. .++| +++|+||+|+.+.... .++.+.+......
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-----~~i~~~~~~~~~~ 150 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGALSA-----SEVSKELNLVELK 150 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTCCCH-----HHHHHHTTTTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCCCCH-----HHHHHHhCccccc
Confidence 878888899999999999987643 333333433332 4566 8999999999763211 1333333332233
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
...++++++||++|. |+.+++++|.+.+
T Consensus 151 ~~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 178 (183)
T 1moz_A 151 DRSWSIVASSAIKGE------------------GITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEBGGGTB------------------THHHHHHHHHHHH
T ss_pred CCceEEEEccCCCCc------------------CHHHHHHHHHHHH
Confidence 345689999999998 8899999887654
No 129
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.2e-18 Score=156.56 Aligned_cols=160 Identities=18% Similarity=0.175 Sum_probs=105.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+++|++... ..+....+..... ..+..++ ..+.||||||+++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~----------------~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEF----------------PEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC----------------C-------CCEEE-EEEEETTEEEEEEEEECTTCTTC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCC----------------CCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHH
Confidence 357999999999999999999986311 0011111111111 1123333 57889999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHH---------HHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVE---------LEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~---------~~i~ 228 (482)
.......+..+|++|+|+|+++....+. ...+..+... ++| +++|+||+|+.+.....+.+. .+..
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccccchhhhhhcccCCCCHHHHH
Confidence 8777788899999999999987543222 2344444444 778 899999999976443322211 1233
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++...++. .+++++||++|. |++++++.|.+.+
T Consensus 166 ~~~~~~~~----~~~~~~SA~~g~------------------gi~el~~~l~~~i 198 (207)
T 2fv8_A 166 AMAVRIQA----YDYLECSAKTKE------------------GVREVFETATRAA 198 (207)
T ss_dssp HHHHHTTC----SEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHHHhcCC----CEEEEeeCCCCC------------------CHHHHHHHHHHHH
Confidence 33444332 389999999998 8999999988754
No 130
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=158.44 Aligned_cols=158 Identities=20% Similarity=0.149 Sum_probs=104.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceee-eeeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN-TATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
...++|+++|..|+|||||+++|++.... ......+... .....+......+.||||||+++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS----------------EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC----------------CCCCCccceEEEEEEEECCEEEEEEEEECCCccch
Confidence 45789999999999999999999864111 0001111111 222233345677899999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
...+...+..+|++|+|+|+++....+.. ..+..+.. .++| +++|+||+|+.+..+... .+..++.+.++
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~- 160 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPEREVQA---VEGKKLAESWG- 160 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCccccccCH---HHHHHHHHHhC-
Confidence 87788888999999999999975443322 22233322 2677 899999999875322111 12334444443
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 161 ----~~~~~~Sa~~~~------------------~v~~l~~~l~~~i 185 (201)
T 3oes_A 161 ----ATFMESSARENQ------------------LTQGIFTKVIQEI 185 (201)
T ss_dssp ----CEEEECCTTCHH------------------HHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8888888887754
No 131
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.75 E-value=8.6e-18 Score=162.29 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=98.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA- 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~- 159 (482)
...++|+++|++|+|||||+|+|++........ .........+++++.....+..++ ..++||||||+.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY--------PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCC--------CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 456899999999999999999997531111000 000001134444555444554444 489999999983
Q ss_pred --------------------hhHHHHHhh----c--ccCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 160 --------------------DYVKNMITG----A--AQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 160 --------------------~~~~~~~~~----~--~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
.|....... + ..+|+++++++... +....+.+.+..+.. ++| +|+|+||+|
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D 155 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKAD 155 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSC-EEEEESSGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCC-EEEEEeccC
Confidence 222211110 0 13678888886654 888888888888777 888 899999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 213 QVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 213 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+....+... .++.+.+.+...+ ++++++|+.++. |+.++++.|.+.+|
T Consensus 156 ~~~~~e~~~-~~~~i~~~l~~~~-----i~v~~~sa~~~~------------------~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 156 TLTPEECQQ-FKKQIMKEIQEHK-----IKIYEFPETDDE------------------EENKLVKKIKDRLP 203 (274)
T ss_dssp GSCHHHHHH-HHHHHHHHHHHTT-----CCCCCC-----------------------------CHHHHHTCS
T ss_pred CCCHHHHHH-HHHHHHHHHHHcC-----CeEEcCCCCCCh------------------hHHHHHHHHhcCCC
Confidence 987555433 3346666666544 567889999887 78889999887654
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.7e-18 Score=161.89 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=105.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++... ..+...+++.+.....+..++ ..+.||||||+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEF----------------NMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCC----------------CC------CCSEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCC----------------CCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc
Confidence 4468999999999999999999986411 111112222222233344444 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...++.+|++|+|+|+++....+. .+.+..+... ++| +++|+||+|+.+..+... .+..++.+..+
T Consensus 75 ~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~~- 149 (223)
T 3cpj_B 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLAHLRAVPT---EESKTFAQENQ- 149 (223)
T ss_dssp TTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGGGGCCSCH---HHHHHHHHHTT-
T ss_pred hhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCH---HHHHHHHHHcC-
Confidence 98878888899999999999988654333 2333344332 566 889999999975321111 13344444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.+.
T Consensus 150 ----~~~~~~Sa~~~~------------------gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 ----LLFTETSALNSE------------------NVDKAFEELINTIY 175 (223)
T ss_dssp ----CEEEECCCC-CC------------------CHHHHHHHHHHHHT
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHHH
Confidence 689999999998 88999998887654
No 133
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=1.6e-18 Score=157.33 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=106.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
++.++|+++|++|+|||||+++|++.. +. . .. .|+......++.++..+.+|||||+++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~-------~~-----~-----~~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD-------VV-----T-----TV--PTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC-------CE-----E-----EC--SSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC-------CC-----C-----cC--CCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 467899999999999999999995320 00 0 00 12222233455568899999999999887
Q ss_pred HHHHhhcccCCeEEEeecCCCCCh-HHHHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~-~~t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++++|+|+++... ....+.+..+.. .+.| +++|+||+|+.+.... + ++.+.+......
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~-~----~~~~~~~~~~~~ 154 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPDAASE-A----EIAEQLGVSSIM 154 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTCCCH-H----HHHHHTTGGGCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCCCCH-H----HHHHHhChhhcc
Confidence 777777889999999999998643 222333333332 2566 8999999999764211 1 222222211122
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
...++++++||++|. |+.++++.|.+.+
T Consensus 155 ~~~~~~~~~Sa~~~~------------------gi~~l~~~l~~~i 182 (189)
T 2x77_A 155 NRTWTIVKSSSKTGD------------------GLVEGMDWLVERL 182 (189)
T ss_dssp SSCEEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred CCceEEEEccCCCcc------------------CHHHHHHHHHHHH
Confidence 235689999999998 8899999887755
No 134
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.74 E-value=2.8e-18 Score=158.75 Aligned_cols=164 Identities=18% Similarity=0.115 Sum_probs=107.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++.... . +. ....+... .....++.....+.||||||+++|.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~-----~------~~---~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP-----T------DY---IPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYS 71 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC-----S------SC---CCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC-----c------cC---CCccceeE-EEEEEECCEEEEEEEEECCCcHHHH
Confidence 45689999999999999999999853110 0 00 00011111 1112223334578999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHH-----HHHHHHHHHhh
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQL-----VELEVRELLSS 233 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~-----i~~~i~~~l~~ 233 (482)
..+...+..+|++|+|+|+++....+.. ..+..+... ++| +++|+||+|+.+....... ...+..++.+.
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 8777888999999999999875443332 333444443 777 8999999998764332000 01244455555
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+++ .+++++||++|. |+.++++.|.+.+.
T Consensus 151 ~~~----~~~~~~Sa~~g~------------------gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 151 IGA----AAYIECSSKTQQ------------------NVKAVFDTAIKVVL 179 (212)
T ss_dssp HTC----SEEEECCTTTCT------------------THHHHHHHHHHHHH
T ss_pred cCC----ceEEEccCCCCC------------------CHHHHHHHHHHHHh
Confidence 543 589999999998 88899888877553
No 135
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=3.1e-18 Score=157.49 Aligned_cols=158 Identities=15% Similarity=0.068 Sum_probs=79.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC----CeEEEEEeCCCch
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE----NRHYAHVDCPGHA 159 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~----~~~i~liDtPG~~ 159 (482)
..++|+++|+.|+|||||+++|++.... ...+....+..+.....+..+ ...+.||||||++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSK--------------FLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC------------------------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCc--------------ccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 4579999999999999999999864110 000111111222333334444 4578999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH------cCCCcEEEEEecCCCCC-hHHHHHHHHHHHHHHH
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ------VGVPNMVVFLNKQDQVD-DEELLQLVELEVRELL 231 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~------~~ip~iivviNK~D~~~-~~~~~~~i~~~i~~~l 231 (482)
+|...+...+..+|++|+|+|+++....+ ....+..+.. .++| +++|+||+|+.+ ..... .+++.++.
T Consensus 85 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~v~---~~~~~~~~ 160 (208)
T 2yc2_C 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLPPQRHQVR---LDMAQDWA 160 (208)
T ss_dssp HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC-------CCC---HHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccchhhccCC---HHHHHHHH
Confidence 99998888899999999999998865423 3334444443 3666 899999999976 22211 12445555
Q ss_pred hhcCCCCCCccEEEcchhh-hHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 232 SSYEFPGDDVPIISGSALL-ALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~-g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+.++ ++++++||++ |. |+.++++.|.+.
T Consensus 161 ~~~~-----~~~~~~Sa~~~~~------------------gi~~l~~~i~~~ 189 (208)
T 2yc2_C 161 TTNT-----LDFFDVSANPPGK------------------DADAPFLSIATT 189 (208)
T ss_dssp HHTT-----CEEEECCC-------------------------CHHHHHHHHH
T ss_pred HHcC-----CEEEEeccCCCCc------------------CHHHHHHHHHHH
Confidence 5544 6899999999 88 666777666553
No 136
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=1.6e-18 Score=155.35 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=104.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh--
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY-- 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~-- 161 (482)
+..+|+++|.+|+|||||+++|++.... ......|+|.+.....+..++..+.+|||||+.++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAA---------------IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc---------------eeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 3478999999999999999999853110 01122345555544556667788999999998542
Q ss_pred ------HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 162 ------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 162 ------~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
.......++.+|++++|+|+++.......+.+..+... ++| +++|+||+|+.+.. .++.+
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~----------~~~~~ 136 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP-ITVVRNKADITGET----------LGMSE 136 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCC-EEEEEECHHHHCCC----------CEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCC-EEEEEECccCCcch----------hhhhh
Confidence 12233457899999999999886654444444444432 577 88999999985311 00111
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
. ...+++++||++|. |+.++++.|.+.+.
T Consensus 137 ~-----~~~~~~~~SA~~g~------------------gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 137 V-----NGHALIRLSARTGE------------------GVDVLRNHLKQSMG 165 (172)
T ss_dssp E-----TTEEEEECCTTTCT------------------THHHHHHHHHHHC-
T ss_pred c-----cCCceEEEeCCCCC------------------CHHHHHHHHHHHhh
Confidence 1 24689999999998 89999999988764
No 137
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=2.1e-18 Score=156.27 Aligned_cols=155 Identities=21% Similarity=0.229 Sum_probs=108.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 162 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~- 162 (482)
..++|+++|+.|+|||||+++|++.. ...+...++|++.....+..++..+.+|||||+.+|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN----------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 45799999999999999999998531 1112334667766666677778999999999988762
Q ss_pred -----HHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 163 -----KNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 163 -----~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
......+ ..+|++++|+|+.. .......+..+...+.| +++|.||+|+....... .+..++.+.++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~----~~~~~~~~~~~ 142 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGAN-LLLALNKMDLAKSLGIE----IDVDKLEKILG 142 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCC-EEEEEECHHHHHHTTCC----CCHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCC-EEEEEEhhhccccccch----HHHHHHHHHhC
Confidence 1122223 35899999999875 33444555566667888 88999999985421111 12233333333
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.++++.+.+.+.
T Consensus 143 -----~~~~~~Sa~~~~------------------~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 143 -----VKVVPLSAAKKM------------------GIEELKKAISIAVK 168 (188)
T ss_dssp -----SCEEECBGGGTB------------------SHHHHHHHHHHHHT
T ss_pred -----CCeEEEEecCCC------------------CHHHHHHHHHHHHH
Confidence 589999999998 88999999887664
No 138
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.74 E-value=4.1e-17 Score=160.12 Aligned_cols=148 Identities=19% Similarity=0.191 Sum_probs=105.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec-CCeEEEEEeCCCchhhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~~~~ 163 (482)
..+|+++|.+|+|||||+++|++.. ........+.|++.....+.. ++..+.||||||+++|..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~---------------~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY---------------SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC---------------CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC---------------CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 5789999999999999999997531 111223556677666655553 568899999999999943
Q ss_pred -----HHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH-----cCCCcEEEEEecCCCCChHHHH---HHHHHHHHH
Q 011581 164 -----NMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ-----VGVPNMVVFLNKQDQVDDEELL---QLVELEVRE 229 (482)
Q Consensus 164 -----~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~-----~~ip~iivviNK~D~~~~~~~~---~~i~~~i~~ 229 (482)
.....++.+|++|+|+|+++....+..+.+ ..+.. .++| +++|+||+|+.+.+++. +....++.+
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~~~~~r~~~~~v~~~~~~~ 146 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLVQLDKREELFQIMMKNLSE 146 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccccchhhhhHHHHHHHHHHHH
Confidence 334455789999999999987665544332 22222 2677 89999999998843332 233456777
Q ss_pred HHhhcCCCCCCccEEEcchhh
Q 011581 230 LLSSYEFPGDDVPIISGSALL 250 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~ 250 (482)
+.+.++++ .++++++||++
T Consensus 147 ~~~~~g~~--~~~~~~tSa~~ 165 (307)
T 3r7w_A 147 TSSEFGFP--NLIGFPTSIWD 165 (307)
T ss_dssp HHHTTTCC--SCEEEECCTTS
T ss_pred HHHHcCCC--CeEEEEeeecC
Confidence 88777653 48999999998
No 139
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=4.5e-18 Score=151.09 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=94.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~~~ 162 (482)
.++|+++|++|+|||||+++|++...... .....+.+.....+..+ ...+.+|||||+++|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHA----------------HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccc----------------ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 47899999999999999999974311110 01111222222223333 4567899999999887
Q ss_pred HH-HHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHHc----CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 163 KN-MITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV----GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 163 ~~-~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~~----~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.. ....+..+|++++|+|+++....+ ..+.+..+... ++| +++|+||+|+.+..+... ++..++.+.++
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~- 140 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVSL---EEGRHLAGTLS- 140 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT-
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcccCCH---HHHHHHHHHcC-
Confidence 63 334467899999999998743322 22233333322 677 889999999974322111 13344445443
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 141 ----~~~~~~Sa~~~~------------------~v~~l~~~l~~~i 165 (169)
T 3q85_A 141 ----CKHIETSAALHH------------------NTRELFEGAVRQI 165 (169)
T ss_dssp ----CEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ----CcEEEecCccCC------------------CHHHHHHHHHHHH
Confidence 589999999998 8889998887643
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=9e-18 Score=173.01 Aligned_cols=149 Identities=23% Similarity=0.237 Sum_probs=103.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|++|+|||||+|+|++... .......|+|.+.....+..++..+.+|||||+.++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~---------------~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER---------------ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT---------------EEECCCC------CCEEEEETTEEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc---------------cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccc
Confidence 458999999999999999999986421 11223456777766667778888999999999865432
Q ss_pred H------------HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH-HHHHHHHHHHHH
Q 011581 164 N------------MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE-LLQLVELEVREL 230 (482)
Q Consensus 164 ~------------~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~-~~~~i~~~i~~~ 230 (482)
. ....+..+|++++|+|+.++...+..+....+...+.| +++|+||+|+.+.++ ..+.+.+++.+.
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~-~ilv~NK~Dl~~~~~~~~~~~~~~~~~~ 322 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRA-SVVVFNKWDLVVHREKRYDEFTKLFREK 322 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGSTTGGGCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCCchhhHHHHHHHHHHHH
Confidence 2 23456789999999999999888887777777778888 889999999986432 123333344444
Q ss_pred HhhcCCCCCCccEEEcchhhhH
Q 011581 231 LSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
+.... ..|++++||++|.
T Consensus 323 ~~~~~----~~~~~~~SA~~g~ 340 (439)
T 1mky_A 323 LYFID----YSPLIFTSADKGW 340 (439)
T ss_dssp CGGGT----TSCEEECBTTTTB
T ss_pred hccCC----CCcEEEEECCCCC
Confidence 43332 3789999999997
No 141
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.74 E-value=2e-17 Score=149.61 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=105.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
...++|+++|+.|+|||||+++|++.... .+....+.... ....++.....+.||||||+++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP----------------ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC----------------SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEECCEEEEEEEEECCCChhh
Confidence 45689999999999999999999864110 00011111111 11223334467899999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHH---------HHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLV---------ELEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~ 228 (482)
.......+..+|++|+|+|+++....+.. ..+..+.. .++| +++|.||+|+.+.......+ .++..
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 87777788899999999999875443332 22233333 2566 89999999997532211111 12344
Q ss_pred HHHhhcCCCCCCccEEEcchh-hhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 229 ELLSSYEFPGDDVPIISGSAL-LALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~-~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++.+.++ ..+++++||+ +|. |+.++++.+.+.
T Consensus 148 ~~~~~~~----~~~~~e~Sa~~~~~------------------gi~~l~~~i~~~ 180 (184)
T 1m7b_A 148 NMAKQIG----AATYIECSALQSEN------------------SVRDIFHVATLA 180 (184)
T ss_dssp HHHHHHT----CSEEEECBTTTBHH------------------HHHHHHHHHHHH
T ss_pred HHHHHcC----CcEEEEeeecCCCc------------------CHHHHHHHHHHH
Confidence 5555544 2689999998 677 888999888653
No 142
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=1.7e-18 Score=166.59 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=106.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH--
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV-- 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~-- 162 (482)
.++|+++|++|+|||||+|+|++.... .....|+|++.....+.. +..+.+|||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~----------------v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR----------------VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC----------------CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc----------------ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 468999999999999999999853111 112347777766666666 7789999999987763
Q ss_pred ----HHHHhhc--ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 163 ----KNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 163 ----~~~~~~~--~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
......+ ..+|++++|+|+++. .........+...++| +++|+||+|+....... .+...+.+.++
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p-~ilv~NK~Dl~~~~~~~----~~~~~l~~~lg- 137 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIP-VTIALNMIDVLDGQGKK----INVDKLSYHLG- 137 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSC-EEEEEECHHHHHHTTCC----CCHHHHHHHHT-
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCC-EEEEEEChhhCCcCCcH----HHHHHHHHHcC-
Confidence 1222233 369999999999862 2233444555667899 88999999985321111 11222333333
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+|++++||++|. |+.+|++.+.+.+.
T Consensus 138 ----~~vi~~SA~~g~------------------gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 138 ----VPVVATSALKQT------------------GVDQVVKKAAHTTT 163 (272)
T ss_dssp ----SCEEECBTTTTB------------------SHHHHHHHHHHSCT
T ss_pred ----CCEEEEEccCCC------------------CHHHHHHHHHHHHh
Confidence 689999999998 89999999988653
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=1.2e-17 Score=151.30 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=100.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
+.+.++|+++|..|+|||||+++|++.... .+... |.......+..++ ..+.||||||++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~----------------~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYV----------------QEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCC----------------CCCCT--TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCC--CcceEEEEEEECCEEEEEEEEECCCCh
Confidence 356789999999999999999999864110 00000 1111112233344 456789999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
+|. .++.+|++++|+|+++....+. ...+..+.. .++| +++|.||+|+........ -.++..++.+.+
T Consensus 79 ~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~v-~~~~~~~~~~~~ 151 (184)
T 3ihw_A 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPRVI-DDSRARKLSTDL 151 (184)
T ss_dssp CHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCCCS-CHHHHHHHHHHT
T ss_pred hhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccccc-CHHHHHHHHHHc
Confidence 886 5667999999999998655444 333344443 3567 889999999852111000 012344555554
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+ .++++++||++|. |+.++++.|.+.
T Consensus 152 ~----~~~~~e~Sa~~~~------------------gv~~lf~~l~~~ 177 (184)
T 3ihw_A 152 K----RCTYYETCATYGL------------------NVERVFQDVAQK 177 (184)
T ss_dssp T----TCEEEEEBTTTTB------------------THHHHHHHHHHH
T ss_pred C----CCeEEEecCCCCC------------------CHHHHHHHHHHH
Confidence 3 3689999999998 888888888764
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=6.5e-18 Score=174.93 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC-----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG----- 157 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG----- 157 (482)
+..++|+++|++|+|||||+|+|++... ...+...|+|.+.....+++.+..+.+|||||
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~---------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI---------------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE---------------C-----------CEEEECTTCSSCCEEECCCC-----
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcc
Confidence 4457999999999999999999975311 12234568888888888888889999999999
Q ss_pred ---chhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 158 ---HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 158 ---~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
++++...+..++..+|++|+|+|+.++....+.+.+.+++..++| +++|+||+|+.+..+ ...++. .+
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~~~~~~-------~~~e~~-~l 156 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNTEMRA-------NIYDFY-SL 156 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC----------------CCSG-GG
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccchhhhh-------hHHHHH-Hc
Confidence 778888888889999999999999999999999999999888998 889999999874311 111221 22
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++ -+++++||.+|. |+.+|++.+...++
T Consensus 157 g~----~~~~~iSA~~g~------------------gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 157 GF----GEPYPISGTHGL------------------GLGDLLDAVAEHFK 184 (456)
T ss_dssp SS----SSEEECCTTTCT------------------THHHHHHHHHTTGG
T ss_pred CC----CceEEeeccccc------------------chHHHHHHHHhhcc
Confidence 33 245799999998 88999999887664
No 145
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=150.11 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=104.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++.... .+.. ..+.+.....+..++ ..+.||||||+++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~----------------~~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYP----------------TEYI-PTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-------------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCC-CcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 45689999999999999999999854210 0001 111111122233444 4577999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHHH
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELEV 227 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~i 227 (482)
|.......+..+|++|+|+|+++....... ..+..+... ++| +++|+||+|+.+.......+ .++.
T Consensus 81 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp CSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 877777778899999999999875543333 233334332 677 88999999997532211110 1234
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..+.+.+++ .+++++||++|. |+.++++.|.+.+
T Consensus 160 ~~~~~~~~~----~~~~~~Sa~~g~------------------gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 160 KLLAEEIKA----ASYIECSALTQK------------------NLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHTC----SEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHHHHhcCC----cEEEEEecCCCC------------------CHHHHHHHHHHHH
Confidence 444444442 489999999998 8889988887654
No 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=1.6e-19 Score=165.71 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=101.5
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~ 160 (482)
...++|+++|+.|+|||||+++|++. ....+...+++.+.....+..++ ..+.||||||+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD----------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC----------------CCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC----------------CCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 34689999999999999999998632 11122222333333333444444 5789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
|...+...+..+|++|+|+|+++....+.. +.+..+... ++| +++|+||+|+.+...... .+..++.+.++
T Consensus 95 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~v~~---~~~~~~~~~~~- 169 (199)
T 3l0i_B 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKVVDY---TTAKEFADSLG- 169 (199)
T ss_dssp CCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC--CCCCS---CC-CHHHHTTT-
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCCccccCCH---HHHHHHHHHcC-
Confidence 987777788899999999999986553333 333334433 566 889999999975321110 12233444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++++||++|. |+.+++++|.+.+.
T Consensus 170 ----~~~~~vSA~~g~------------------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 170 ----IPFLETSAKNAT------------------NVEQSFMTMAAEIK 195 (199)
T ss_dssp ----CCBCCCCC---H------------------HHHHHHHHHTTTTT
T ss_pred ----CeEEEEECCCCC------------------CHHHHHHHHHHHHH
Confidence 678999999998 89999999987653
No 147
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.72 E-value=1.7e-17 Score=154.30 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=105.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee--cCCeEEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--~~~~~i~liDtPG~~~~ 161 (482)
+.++|+++|..++|||||+++++.. .+..+...++..+.....+. .....+.||||+|+++|
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~----------------~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~ 75 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYD----------------SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERF 75 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS----------------CCC----------CEEEEEECSSCEEEEEEECCSCTTTC
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhC----------------CCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhh
Confidence 3579999999999999999999853 12222222233333222333 33456789999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHH---HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAK---QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~---~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
......+++.+|++++|+|.++....+. ...+..+. ..++| +|+|.||+|+.+...... ++..++.+.++
T Consensus 76 ~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~r~V~~---~e~~~~a~~~~-- 149 (216)
T 4dkx_A 76 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADKRQVSI---EEGERKAKELN-- 149 (216)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT--
T ss_pred hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhcCcccH---HHHhhHHHHhC--
Confidence 8888888999999999999987543222 22333332 23566 889999999875322111 24455555554
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++++.+||++|. |+.++++.|...++
T Consensus 150 ---~~~~e~SAktg~------------------nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 ---VMFIETSAKAGY------------------NVKQLFRRVAAALP 175 (216)
T ss_dssp ---CEEEEEBTTTTB------------------SHHHHHHHHHHHC-
T ss_pred ---CeeEEEeCCCCc------------------CHHHHHHHHHHHHH
Confidence 579999999998 89999999887664
No 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=8.1e-18 Score=166.68 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=105.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|++|+|||||+++|++.. + . +.. .|+......++..+..+.||||||+++|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~-------~---------~-~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGE-------I---------V-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSC-------C---------E-EEE--EETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCC-------C---------C-Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 45699999999999999999996421 0 0 001 144444455667888999999999999988
Q ss_pred HHHhhcccCCeEEEeecCCCCChH-HHHHHH-HHHHHc---CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 164 NMITGAAQMDGAILVVSGADGPMP-QTKEHI-LLAKQV---GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l-~~~~~~---~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
....++..+|++|+|+|+++.... ...+.+ .++... ++| +++|+||+|+.+.... + ++...+.......
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~~~~~-~----~i~~~~~~~~~~~ 298 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPNAMNA-A----EITDKLGLHSLRH 298 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCH-H----HHHHHHTCTTCCS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCCcccCH-H----HHHHHhchhhhhc
Confidence 888888999999999999864432 222222 333322 667 8999999999864321 1 2233332222233
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++++++||++|. |+++|++.|.+.+
T Consensus 299 ~~~~~~~vSAk~g~------------------gi~el~~~l~~~l 325 (329)
T 3o47_A 299 RNWYIQATCATSGD------------------GLYEGLDWLSNQL 325 (329)
T ss_dssp SCEEEEECBTTTTB------------------THHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCc------------------CHHHHHHHHHHHH
Confidence 46789999999998 8999999988765
No 149
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.72 E-value=1.3e-17 Score=172.53 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=112.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCch-hhH-
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA-DYV- 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~-~~~- 162 (482)
.++|+++|.+|+|||||+|+|++... .......|+|.+.....+..++..+.||||||+. ++.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~ 307 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh
Confidence 47999999999999999999997521 1112245667777667777788999999999988 552
Q ss_pred -------HHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 163 -------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 163 -------~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
..+...+..+|++|+|+|++++...+..+.+..+ .+.| +++|+||+|+.+... .+ ++.+++.
T Consensus 308 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~p-iivV~NK~DL~~~~~-~~----~~~~~~~--- 376 (482)
T 1xzp_A 308 LVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKR-YLVVINKVDVVEKIN-EE----EIKNKLG--- 376 (482)
T ss_dssp TCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSS-EEEEEEECSSCCCCC-HH----HHHHHHT---
T ss_pred hHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCC-EEEEEECcccccccC-HH----HHHHHhc---
Confidence 4456778899999999999988777666666554 3677 899999999975311 11 2333321
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
...+++++||++|. |+++|+++|.+.+
T Consensus 377 ---~~~~~i~iSAktg~------------------Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 ---TDRHMVKISALKGE------------------GLEKLEESIYRET 403 (482)
T ss_dssp ---CSTTEEEEEGGGTC------------------CHHHHHHHHHHHT
T ss_pred ---CCCcEEEEECCCCC------------------CHHHHHHHHHHHH
Confidence 23689999999998 7777777776643
No 150
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=1.8e-17 Score=153.94 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=107.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~ 160 (482)
....++|+++|..|+|||||+++|++... ..+....+.... ....++.....+.||||||+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCY----------------PETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCC----------------CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGG
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCC----------------CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHh
Confidence 34568999999999999999999986411 001111111111 1222333456789999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHH--HHHHHHHHHc--CCCcEEEEEecCCCCChHHHHH---------HHHHHH
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEELLQ---------LVELEV 227 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~---------~i~~~i 227 (482)
|.......++.+|++|+|+|+++...... ...+..+... ++| +++|.||+|+.+...... ...++.
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 98888888899999999999998655443 3333444443 667 889999999975311110 011244
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhh-HHHHHHHhhhcC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDK-IYELMDSVDSYI 283 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~g-i~~Ll~~l~~~l 283 (482)
.++.+.+++ .+++++||++|. | +.++++.|.+.+
T Consensus 167 ~~~~~~~~~----~~~~e~SA~~g~------------------g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 167 CAIAKQLGA----EIYLEGSAFTSE------------------KSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHHHTC----SEEEECCTTTCH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CEEEEeccCCCc------------------ccHHHHHHHHHHHH
Confidence 455555542 389999999998 7 888888887754
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.72 E-value=5.7e-17 Score=154.06 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=109.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~---- 158 (482)
.+.++|+++|++|+|||||+|+|++....... ....|+|.......+..++..+.||||||.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~ 84 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSR--------------LGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQ 84 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSSTT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCcccc--------------CCCCCccccEEEEEEEECCcEEEEEECCCCCCCC
Confidence 35689999999999999999999864211100 012345666666667778999999999997
Q ss_pred ----hhhHHHHHhhc----ccCCeEEEeecCCCCChHHHHHHHHHHHHc------CCCcEEEEEecCCCCCh--HHHHHH
Q 011581 159 ----ADYVKNMITGA----AQMDGAILVVSGADGPMPQTKEHILLAKQV------GVPNMVVFLNKQDQVDD--EELLQL 222 (482)
Q Consensus 159 ----~~~~~~~~~~~----~~~D~~ilVvda~~g~~~~t~e~l~~~~~~------~ip~iivviNK~D~~~~--~~~~~~ 222 (482)
.++...+...+ ..+|++|+|+|++. ....+...+..+... +.| +|++.||+|+.+. ++....
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~-iilv~nK~Dl~~~~~~~~l~~ 162 (247)
T 3lxw_A 85 VSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWM-VIVFTRKEDLAGGSLHDYVSN 162 (247)
T ss_dssp HHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGE-EEEEECGGGGTTCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccE-EEEEEchHhcCCCCHHHHHhh
Confidence 55555555554 89999999999985 666666666666654 566 8899999999762 122211
Q ss_pred H-HHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 223 V-ELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 223 i-~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
. ...++.+++.++. +++++++..... .-.+|+.+|++.+.+.++
T Consensus 163 ~~~~~l~~l~~~~g~-----~~~~~~~~~~~~-------------~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 163 TENRALRELVAECGG-----RVCAFDNRATGR-------------EQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp CCCHHHHHHHHHTTT-----CEEECCTTCCHH-------------HHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCC-----eEEEEeCCCCcc-------------ccHHHHHHHHHHHHHHHH
Confidence 0 0246777777663 344444322100 001278889988887664
No 152
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.72 E-value=5.3e-17 Score=149.78 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=104.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee-eeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT-ATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~-~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
...++|+++|..|+|||||+++|++... ..+....+.... ....++.....+.||||||+++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCF----------------PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCC----------------CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCC----------------CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhh
Confidence 4568999999999999999999986411 000011111111 11222333467899999999999
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHH---------HHHHH
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLV---------ELEVR 228 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i---------~~~i~ 228 (482)
.......+..+|++|+|+|+++....... ..+..+.. .++| +++|.||+|+.+.......+ .++..
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 168 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 168 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence 77777778899999999999875433332 22233333 2566 89999999997532211111 12344
Q ss_pred HHHhhcCCCCCCccEEEcchh-hhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 229 ELLSSYEFPGDDVPIISGSAL-LALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~-~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++.+.++ ..+++++||+ +|. |+.++++.|.+.
T Consensus 169 ~~~~~~~----~~~~~e~SAk~~~~------------------gv~~lf~~l~~~ 201 (205)
T 1gwn_A 169 NMAKQIG----AATYIECSALQSEN------------------SVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHT----CSEEEECCTTTCHH------------------HHHHHHHHHHHH
T ss_pred HHHHHcC----CCEEEEeeeccCCc------------------CHHHHHHHHHHH
Confidence 5555544 2689999998 577 888988887653
No 153
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=2.8e-18 Score=160.04 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=109.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
....++|+++|+.|+|||||+++|+..... .......|.+.......++.....+.||||||+++|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHT--------------CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC--------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 456789999999999999999996543211 111223455665555555555678899999999998
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHHH-HHHHHHHc--CCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAKQV--GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~e-~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.......+..+|++|+|+|+++....+... .+..+... ++| +++|+||+|+.+..... +...+.+..
T Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~-----~~~~~~~~~---- 147 (221)
T 3gj0_A 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVKA-----KSIVFHRKK---- 147 (221)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSCSSCG-----GGCCHHHHH----
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccccccccH-----HHHHHHHHc----
Confidence 877777888999999999999865433322 22333322 677 89999999997632110 112222222
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++++||++|. |+.++++.|.+.+
T Consensus 148 -~~~~~~~Sa~~~~------------------gi~~l~~~l~~~l 173 (221)
T 3gj0_A 148 -NLQYYDISAKSNY------------------NFEKPFLWLARKL 173 (221)
T ss_dssp -TCEEEECBGGGTB------------------TTTHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 3689999999998 7778888877654
No 154
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=150.99 Aligned_cols=160 Identities=19% Similarity=0.117 Sum_probs=101.9
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
....++|+++|.+|+|||||+++|++... .. ....+++.+.....+..++ ..+.+|||||++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQG--------------DS--AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEEC--------------CG--GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccC--------------Cc--cCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 34568999999999999999999963210 00 0111222222222233333 467899999998
Q ss_pred hhHH-HHHhhcccCCeEEEeecCCCCChHH-HHHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 160 DYVK-NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 160 ~~~~-~~~~~~~~~D~~ilVvda~~g~~~~-t~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
+|.. .....++.+|++|+|+|+++..... ..+.+..+.. .++| +++|.||+|+.+...... ++..++.+.
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~a~~ 159 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSREVSL---EEGRHLAGT 159 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTTTCCSCH---HHHHHHHHH
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccccCCcCH---HHHHHHHHH
Confidence 8754 3344567899999999998743322 2233333332 3677 889999999975322111 133344444
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++ ++++++||++|. |+.++++.|.+.+.
T Consensus 160 ~~-----~~~~e~Sa~~~~------------------~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 160 LS-----CKHIETSAALHH------------------NTRELFEGAVRQIR 187 (195)
T ss_dssp TT-----CEEEEEBTTTTB------------------SHHHHHHHHHHHHH
T ss_pred hC-----CEEEEEcCCCCC------------------CHHHHHHHHHHHHH
Confidence 43 589999999998 88999998887653
No 155
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=6.5e-17 Score=146.41 Aligned_cols=153 Identities=25% Similarity=0.336 Sum_probs=100.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCC--------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG-------- 157 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG-------- 157 (482)
++|+++|++|+|||||+++|++.. ...+...|+|.+.....+ . .+.+|||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK----------------VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC----------------CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC----------------CccCCCCCccceeEEEec--C--CEEEEECCCccccccCC
Confidence 589999999999999999998531 111223355544433333 2 689999999
Q ss_pred ---chhhHHHHHhh----cccCCeEEEeecCCCC-----------ChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHH
Q 011581 158 ---HADYVKNMITG----AAQMDGAILVVSGADG-----------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL 219 (482)
Q Consensus 158 ---~~~~~~~~~~~----~~~~D~~ilVvda~~g-----------~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~ 219 (482)
++.|...+... +..+++++.|+|+... ...++.+.+..+...++| +++|+||+|+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV-- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhccCcH--
Confidence 56665554444 4456677777876532 112234455556667888 89999999998743
Q ss_pred HHHHHHHHHHHHhhcCCCCC--CccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 220 LQLVELEVRELLSSYEFPGD--DVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 220 ~~~i~~~i~~~l~~~~~~~~--~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
. .+..++.+.++++.. ..+++++||++|. |+.++++.|.+.+
T Consensus 139 ~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~------------------~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 139 Q----EVINFLAEKFEVPLSEIDKVFIPISAKFGD------------------NIERLKNRIFEVI 182 (190)
T ss_dssp H----HHHHHHHHHHTCCGGGHHHHEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhhhhhhccCCcEEEEecCCCC------------------CHHHHHHHHHHhc
Confidence 1 133444444444210 2468999999998 8899999887754
No 156
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.71 E-value=1.3e-17 Score=171.89 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=104.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 163 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~ 163 (482)
..++|+++|++|+|||||+|+|++..... .....|+|.+.....+..++..+.||||||+.++..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~---------------v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI---------------VTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSC---------------CSCCTTCCHHHHHHEEEETTEEEEECC---------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCccc---------------ccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 35789999999999999999999753211 112345666665556667889999999999877632
Q ss_pred --------HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 164 --------NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 164 --------~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
.+...+..+|++|+|+|++++...+..+.+..+. ..| +++|+||+|+.+..... .++.+.
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~p-iivV~NK~Dl~~~~~~~---------~~~~~~ 355 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRP-LILVMNKIDLVEKQLIT---------SLEYPE 355 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSC-EEEEEECTTSSCGGGST---------TCCCCT
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCc-EEEEEECCCCCcchhhH---------HHHHhc
Confidence 2344567899999999999988888777666554 356 88999999998743211 112211
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...+++++||++|. |+++|++.|.+.+.
T Consensus 356 ---~~~~~i~iSAktg~------------------Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 356 ---NITQIVHTAAAQKQ------------------GIDSLETAILEIVQ 383 (462)
T ss_dssp ---TCCCEEEEBTTTTB------------------SHHHHHHHHHHHHT
T ss_pred ---cCCcEEEEECCCCC------------------CHHHHHHHHHHHHh
Confidence 34689999999998 88888888877654
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=148.07 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=98.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
....++|+++|..|+|||||+++|++.... .. .....+.+. .....++.....+.||||||+++|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~------------~~--~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI------------SE--YDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC------------SC--CCTTCCEEE-EEEEEETTEEEEEEEEECCC---C
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC------------cc--cCCCcccee-eEEEEECCEEEEEEEEECCCCCcc
Confidence 345689999999999999999999864110 00 000111111 111223333456789999999887
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH------cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ------VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
.. +...++.+|++++|+|+++....+. .+.+..+.. .++| +++|+||+|+.+..+... ++..++.+.+
T Consensus 83 ~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~ 157 (187)
T 3c5c_A 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVTK---AEGVALAGRF 157 (187)
T ss_dssp CC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSCH---HHHHHHHHHH
T ss_pred hh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccCH---HHHHHHHHHc
Confidence 54 2457788999999999987543332 223333332 3777 899999999964321111 2344444544
Q ss_pred CCCCCCccEEEcch-hhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSA-LLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa-~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+ ++++++|| ++|. |+.++++.|.+.
T Consensus 158 ~-----~~~~e~Sa~~~g~------------------gv~~lf~~l~~~ 183 (187)
T 3c5c_A 158 G-----CLFFEVSACLDFE------------------HVQHVFHEAVRE 183 (187)
T ss_dssp T-----CEEEECCSSSCSH------------------HHHHHHHHHHHH
T ss_pred C-----CcEEEEeecCccc------------------cHHHHHHHHHHH
Confidence 4 58999999 8988 889999888764
No 158
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.53 E-value=1.1e-18 Score=160.52 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=103.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeee--eeeEeecCCeEEEEEeCCCchh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~--~~~~~~~~~~~i~liDtPG~~~ 160 (482)
+..++|+++|++|+|||||+++|++...... ....+.+. ....++.....+.||||||+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 4578999999999999999999975321000 00001111 1112222345567999999999
Q ss_pred hHHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHHH
Q 011581 161 YVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELEV 227 (482)
Q Consensus 161 ~~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~i 227 (482)
|.......+..+|++|+|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+ ..+.
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 169 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 169 (204)
Confidence 988888888999999999999876543332 233344433 677 88999999997643211111 1122
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhh
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDS 281 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~ 281 (482)
.++.+.+++ .+++++||++|. |++++++.|.+
T Consensus 170 ~~~~~~~~~----~~~~~vSA~~g~------------------gi~~l~~~l~~ 201 (204)
T 3th5_A 170 LAMAKEIGA----VKYLECSALTQR------------------GLKTVFDEAIR 201 (204)
Confidence 333333321 388999999998 88888888765
No 159
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.69 E-value=5.3e-17 Score=145.57 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=96.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
.+.++|+++|..|+|||||+++|++.... + .....+... .....+......+.||||||++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~------------~---~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQ------------V---LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCC------------C---CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC------------C---cCCCcceeE-EEEEEECCEEEEEEEEECCCCchh-
Confidence 45789999999999999999999864110 0 000111111 112222222356789999999873
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHHHHHH-HHHHH------cCCCcEEEEEecCCCCCh--HHHHHHHHHHHHHHHhh
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ------VGVPNMVVFLNKQDQVDD--EELLQLVELEVRELLSS 233 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l-~~~~~------~~ip~iivviNK~D~~~~--~~~~~~i~~~i~~~l~~ 233 (482)
..++.+|++|+|+|+++....+....+ ..+.. .++| +++|.||+|+.+. .... .++..++.+.
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~v~---~~~~~~~~~~ 139 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRISASSPRVVG---DARARALXAD 139 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTCBTTBCCCSC---HHHHHHHHHH
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccCcCC---HHHHHHHHHh
Confidence 345679999999999876544433332 12222 2566 8899999998421 1110 0133334433
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++ .++++++||++|. |+.++++.|.+.
T Consensus 140 ~~----~~~~~~~Sa~~~~------------------~i~~lf~~l~~~ 166 (178)
T 2iwr_A 140 MK----RCSYYETXATYGL------------------NVDRVFQEVAQK 166 (178)
T ss_dssp HS----SEEEEEEBTTTTB------------------THHHHHHHHHHH
T ss_pred hc----CCeEEEEeccccC------------------CHHHHHHHHHHH
Confidence 32 3689999999998 888888887664
No 160
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=7.2e-17 Score=147.39 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=98.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceee-eeeeEeecCCeEEEEEeCCCchhh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN-TATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~-~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
+..++|+++|+.|+|||||+++|++.... .+....+... .....++.....+.||||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI----------------WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED- 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC----------------SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-
Confidence 45689999999999999999999864110 0001111111 11122333346789999999987
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChH-HHHHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~-~t~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......+..+|++++|+|+++.... ...+.+..+. ..++| +++|+||+|+.+..+... ++..++.+.++
T Consensus 89 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~~~~~~~- 163 (196)
T 2atv_A 89 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQVST---EEGEKLATELA- 163 (196)
T ss_dssp CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCSCH---HHHHHHHHHHT-
T ss_pred ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccccccccCH---HHHHHHHHHhC-
Confidence 55566677889999999999874332 2222223232 24777 899999999975321111 13333444433
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++++||++|.+ |+.++++.|.+.
T Consensus 164 ----~~~~~~Sa~~g~~-----------------gi~~l~~~l~~~ 188 (196)
T 2atv_A 164 ----CAFYECSACTGEG-----------------NITEIFYELCRE 188 (196)
T ss_dssp ----SEEEECCTTTCTT-----------------CHHHHHHHHHHH
T ss_pred ----CeEEEECCCcCCc-----------------CHHHHHHHHHHH
Confidence 6899999998851 466777776654
No 161
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.6e-16 Score=166.43 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=113.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
+..++|+++|.+|+|||||+++|++.. +. ....|+......++..+..+.||||||+++|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~-------~~------------~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ-------SV------------TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS-------CC------------CCCCCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC-------CC------------CcCCccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 456899999999999999999998642 00 00124444455567788899999999999998
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
..+...+..+|++|+|+|+++....+. .+.+..+.. .++| +|+|+||+|+.+.... + ++.+.+......
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~-~----~~~~~~~~~~~~ 454 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKP-H----EIQEKLGLTRIR 454 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSCCCH-H----HHHHHTTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcCCCH-H----HHHHHhchhhhh
Confidence 888888999999999999998644332 222222222 3677 8999999999763211 1 222323222222
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
...++++++||++|. |+++++++|.+.+.
T Consensus 455 ~~~~~~~~~SA~~g~------------------gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 455 DRNWYVQPSCATSGD------------------GLYEGLTWLTSNYK 483 (497)
T ss_dssp SSCEEEEECBTTTTB------------------THHHHHHHHHHHCC
T ss_pred cCCeEEEEEECCCCC------------------CHHHHHHHHHHHHH
Confidence 245789999999998 99999999988764
No 162
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.67 E-value=1.4e-16 Score=144.08 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=100.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee-----cCCeEEEEEeCCCch
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE-----TENRHYAHVDCPGHA 159 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~-----~~~~~i~liDtPG~~ 159 (482)
.++|+++|.+|+|||||+++|++.... ...+...++.++.....+. .....+.+|||||++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~--------------~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKS--------------DLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCc--------------cCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 368999999999999999999753100 0001111222332222222 135678999999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCCh--HHHHHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPM--PQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
+|.......++.+|++++|+|.+++.. ......+..+.. .+.| +++|.||+|+.+.....+.......++.+.++
T Consensus 68 ~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
T 2zej_A 68 EFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTHLDVSDEKQRKACMSKITKELLNKRG 146 (184)
T ss_dssp HHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCE-EEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCc-EEEEEECCCcccchhhHHHHHHHHHHHHHhcC
Confidence 887666666778999999999987632 222233333332 2566 88889999998744332222223334444444
Q ss_pred CCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 236 FPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++ ...+++++||++|.+ ++.+|++.|.+.++
T Consensus 147 ~~-~~~~~~~~Sa~~~~~-----------------~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 147 FP-AIRDYHFVNATEESD-----------------ALAKLRKTIINESL 177 (184)
T ss_dssp SC-EEEEEEECCTTSCCH-----------------HHHHHHHHHHHHHH
T ss_pred Cc-chhheEEEecccCch-----------------hHHHHHHHHHHHHh
Confidence 31 112489999998831 67888888876553
No 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.67 E-value=3e-16 Score=155.23 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=109.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe--EEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPG~~ 159 (482)
....++|+++|.+|+|||||+++|++.... +...+.+.+.....+..++. .+.||||||++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFP-----------------GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCC-----------------CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCC-----------------cccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 355689999999999999999999853110 00111222222223334444 45599999999
Q ss_pred hhHHHHHhhcccCCeEEEeecCCCCChHHHH--HHHHHHHHc--CCCcEEEEEecCCCCChHHHHHHH---------HHH
Q 011581 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLQLV---------ELE 226 (482)
Q Consensus 160 ~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~--e~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~i---------~~~ 226 (482)
+|.......+..+|++++|+|+++....+.. ..+..+... ++| +++|+||+|+.+.....+.+ ..+
T Consensus 215 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhcccccchhhhccccccccccHHH
Confidence 9988888888999999999999986554433 233444443 677 89999999997643222111 123
Q ss_pred HHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 227 VRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 227 i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
..++.+..++ .+++++||++|. |+.++++.|.+.+
T Consensus 294 ~~~~~~~~~~----~~~~~~Sa~~~~------------------gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GLAMAKEIGA----VKYLECSALTQR------------------GLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHTTC----SEEEECCTTTCT------------------THHHHHHHHHHHH
T ss_pred HHHHHHHcCC----cEEEEecCCCCc------------------CHHHHHHHHHHHH
Confidence 4445555442 489999999998 8999999887654
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=7.7e-16 Score=145.40 Aligned_cols=167 Identities=12% Similarity=0.160 Sum_probs=100.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc----
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH---- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~---- 158 (482)
...++|+++|++|+|||||+|+|++.... .......++|.+.....+.+.+..+.||||||+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVF--------------HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE 92 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCS--------------CC-------CCSCEEEEEEETTEEEEEEECCSCC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcC--------------ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC
Confidence 45789999999999999999999864110 001112256666666667778899999999994
Q ss_pred -------hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH-----HcCCCcEEEEEecCCCCChHHHHHHH---
Q 011581 159 -------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK-----QVGVPNMVVFLNKQDQVDDEELLQLV--- 223 (482)
Q Consensus 159 -------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-----~~~ip~iivviNK~D~~~~~~~~~~i--- 223 (482)
..+...+......+|++|+|+|++.. .....+.+..+. ....| +++|+||+|+.......+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~i~~~ 170 (239)
T 3lxx_A 93 VPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSF-MILIFTRKDDLGDTNLHDYLREA 170 (239)
T ss_dssp --CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGG-EEEEEECGGGC------------
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccce-EEEEEeCCccCCcccHHHHHHhc
Confidence 34455555556778999999998753 334444444332 12345 88999999998754333222
Q ss_pred HHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 224 ELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.+.++++++.++. .+++++...+.+ .-..++.+|++.+...+
T Consensus 171 ~~~l~~l~~~~~~-----~~~~~~~~~~~~-------------~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 171 PEDIQDLMDIFGD-----RYCALNNKATGA-------------EQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp CHHHHHHHHHHSS-----SEEECCTTCCHH-------------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC-----EEEEEECCCCcc-------------ccHHHHHHHHHHHHHHH
Confidence 2356777777653 355555432210 00126788888876654
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=5.5e-16 Score=155.16 Aligned_cols=160 Identities=22% Similarity=0.212 Sum_probs=103.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc------
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH------ 158 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~------ 158 (482)
...|+++|++|+|||||+|+|++... ..+...+.|.+.....+..++..+.++||||+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~ 242 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP 242 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCCG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH
Confidence 44599999999999999999986421 11223455666666667777888999999997
Q ss_pred ---hhhHHHHHhhcccCCeEEEeecCCCCC--h-HHHHHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 159 ---ADYVKNMITGAAQMDGAILVVSGADGP--M-PQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 159 ---~~~~~~~~~~~~~~D~~ilVvda~~g~--~-~~t~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
+.| ..+...+..+|++++|+|+++.. . .+.......+.. .+.| +++|.||+|+.+... ......+..
T Consensus 243 ~lve~f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~ 318 (364)
T 2qtf_A 243 QIVDAF-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKIDKINGDL--YKKLDLVEK 318 (364)
T ss_dssp GGHHHH-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGGCCSCH--HHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCCCCchH--HHHHHHHHH
Confidence 223 44566788999999999998765 2 222222334444 3567 889999999986321 111112222
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
+...+.. ...+++++||++|. |+++|++.|.+.+.
T Consensus 319 l~~~l~~--~~~~~~~~SA~~g~------------------gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 319 LSKELYS--PIFDVIPISALKRT------------------NLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHCS--CEEEEEECBTTTTB------------------SHHHHHHHHHHHHH
T ss_pred HHHHhcC--CCCcEEEEECCCCc------------------CHHHHHHHHHHHhc
Confidence 3333311 23578999999998 88999998877653
No 166
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.65 E-value=9.5e-17 Score=159.14 Aligned_cols=155 Identities=18% Similarity=0.214 Sum_probs=104.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHAD--- 160 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~--- 160 (482)
..+|+++|.+|+|||||+++|++..... ......|.......+..++ ..+.||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i----------------~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI----------------ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE----------------SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc----------------ccCCccccCceEEEEEeCCCceEEEecCCCCccccc
Confidence 4579999999999999999997531111 1112334444444455554 7899999999754
Q ss_pred ----hHHHHHhhcccCCeEEEeecCCC---C-ChHHHHHHHHHHHHc-----CCCcEEEEEecCCCCChHHHHHHHHHHH
Q 011581 161 ----YVKNMITGAAQMDGAILVVSGAD---G-PMPQTKEHILLAKQV-----GVPNMVVFLNKQDQVDDEELLQLVELEV 227 (482)
Q Consensus 161 ----~~~~~~~~~~~~D~~ilVvda~~---g-~~~~t~e~l~~~~~~-----~ip~iivviNK~D~~~~~~~~~~i~~~i 227 (482)
+....+..+..+|++|+|+|+++ . ........+..+..+ ++| +++|+||+|+....+. +
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl~~~~e~-------~ 293 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKMDMPEAAEN-------L 293 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECTTSTTHHHH-------H
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECccCCCCHHH-------H
Confidence 34555666778999999999986 2 223333344445542 567 7899999999875432 2
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.++.+.+.. ..+++++||+++. |+++|++.|.+.+.
T Consensus 294 ~~l~~~l~~---~~~v~~iSA~tg~------------------gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 294 EAFKEKLTD---DYPVFPISAVTRE------------------GLRELLFEVANQLE 329 (342)
T ss_dssp HHHHHHCCS---CCCBCCCSSCCSS------------------TTHHHHHHHHHHHT
T ss_pred HHHHHHhhc---CCCEEEEECCCCc------------------CHHHHHHHHHHHHh
Confidence 222233321 2678999999998 88899998887664
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.64 E-value=5.1e-15 Score=142.45 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=106.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
....++|+++|++|+|||||+|+|++... .......+.|.......++..+..+.||||||+.++
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERV---------------VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCc---------------ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 34578999999999999999999985411 011122344555555566778889999999998655
Q ss_pred H-------HHHHhh--cccCCeEEEeecCCC-CChHHHHHHHHHHHHc-C----CCcEEEEEecCCCCChH-----HHHH
Q 011581 162 V-------KNMITG--AAQMDGAILVVSGAD-GPMPQTKEHILLAKQV-G----VPNMVVFLNKQDQVDDE-----ELLQ 221 (482)
Q Consensus 162 ~-------~~~~~~--~~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~-~----ip~iivviNK~D~~~~~-----~~~~ 221 (482)
. ..+... ...+|++|+|+|++. .......+.+..+... + .| +++|+||+|+..++ +..+
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEECCSCCCGGGCCHHHHHH
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEECcccCCcCCCCHHHHHH
Confidence 2 222222 236899999987765 4445555666655443 4 35 89999999997643 2333
Q ss_pred HHHHHHHHHHhh-cCCC----CCCccEEEcchhhhHHHhhcCC-CcccCcchhhhhHHHHHHHhhhcCC
Q 011581 222 LVELEVRELLSS-YEFP----GDDVPIISGSALLALEALMANP-SIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 222 ~i~~~i~~~l~~-~~~~----~~~~~~i~~Sa~~g~~~~~~~~-~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
....++++.++. .++. ...+|+..+...... .....+ .......+|+. .|++.|.+.+.
T Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~p~~~v~~~~~~-~~~~~~~~v~~~~~~w~~---~Ll~~l~~~~~ 244 (270)
T 1h65_A 180 KRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRC-NKNDSDEKVLPNGIAWIP---HLVQTITEVAL 244 (270)
T ss_dssp HHHHHHHHHHHHHTTCCTTSGGGCCCEEECCCCTTC-CBCTTSCBBCTTSCBHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCEEEEeCCCcc-cccCCCceECCCCCCcHH---HHHHHHHHHHh
Confidence 333344444432 1111 112566665543110 000011 12223347875 56666666554
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.64 E-value=2.8e-15 Score=150.24 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=103.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY- 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~- 161 (482)
....+|+++|++|+|||||+|+|++.... .....+.|.+.....+...+..+.+|||||+.++
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE----------------IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE----------------EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----------------cCCCCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 45689999999999999999999753211 1112234444444555566788999999997543
Q ss_pred -------HHHHH-hhcccCCeEEEeecCCCCC--h-HHHHHHHHHHHH-c-CCCcEEEEEecCCCCChHHHHHHHHHHHH
Q 011581 162 -------VKNMI-TGAAQMDGAILVVSGADGP--M-PQTKEHILLAKQ-V-GVPNMVVFLNKQDQVDDEELLQLVELEVR 228 (482)
Q Consensus 162 -------~~~~~-~~~~~~D~~ilVvda~~g~--~-~~t~e~l~~~~~-~-~ip~iivviNK~D~~~~~~~~~~i~~~i~ 228 (482)
..... .....+|++++|+|++... . ....+.+..+.. . +.| +++|+||+|+....+. + +..
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl~~~~~~-~----~~~ 302 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDVADEENI-K----RLE 302 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTTCCHHHH-H----HHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcccCChHHH-H----HHH
Confidence 11222 2334699999999988743 2 222333443333 3 677 8999999999875432 1 333
Q ss_pred HHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 229 ELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 229 ~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++.. .++++++||++|. |+++|+++|.+.+
T Consensus 303 ~~~~~~-----~~~~~~iSA~~g~------------------gi~~l~~~i~~~l 334 (357)
T 2e87_A 303 KFVKEK-----GLNPIKISALKGT------------------GIDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHT-----TCCCEECBTTTTB------------------THHHHHHHHHHHH
T ss_pred HHHHhc-----CCCeEEEeCCCCc------------------CHHHHHHHHHHHH
Confidence 344432 3679999999998 8888888887654
No 169
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.6e-15 Score=140.36 Aligned_cols=161 Identities=18% Similarity=0.137 Sum_probs=97.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY- 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~- 161 (482)
...++|+++|.+|+|||||+++|++...... .. . ...|.+.......++.....+.+|||+|.+..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~----------~~--~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~ 101 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMD----------SD--C-EVLGEDTYERTLMVDGESATIILLDMWENKGEN 101 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTC----------CC------CCTTEEEEEEEETTEEEEEEEECCTTTTHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCC----------Cc--C-CccceeeEEEEEEECCeeeEEEEeecCCCcchh
Confidence 3468999999999999999999974211000 00 0 01222222222222222345678999998773
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......++.+|++|+|+|.++....+. .+.+..+.. .++| +|+|.||+|+.+..+... .+...+...++
T Consensus 102 ~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~r~v~~---~e~~~~a~~~~- 176 (211)
T 2g3y_A 102 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRCREVSV---SEGRACAVVFD- 176 (211)
T ss_dssp HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGGCCSCH---HHHHHHHHHHT-
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcCceEeH---HHHHHHHHHcC-
Confidence 3333344578999999999987433222 223333332 2677 899999999964221111 12222333332
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++++++||++|. |+.++++.|.+.+
T Consensus 177 ----~~~~e~SAk~g~------------------~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ----CKFIETSAAVQH------------------NVKELFEGIVRQV 201 (211)
T ss_dssp ----CEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ----CEEEEEeCCCCC------------------CHHHHHHHHHHHH
Confidence 689999999998 8889988887654
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=6.8e-16 Score=143.26 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=87.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
+...++|+++|++|+|||||+++|++..... .. .....++. .......+.+|||||+.+|
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~-------------~~--~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------------TV--VSQEPLSA-----ADYDGSGVTLVDFPGHVKL 68 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCC-------------BC--CCSSCEEE-----TTGGGSSCEEEECCCCGGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-------------ee--eecCceEE-----EEeeCceEEEEECCCcHHH
Confidence 4567899999999999999999998642100 00 00011111 1124567899999999999
Q ss_pred HHHHHhhccc----CCeEEEeecCC-C--CChHHHHHHHHHHHH------cCCCcEEEEEecCCCCCh---HHHHHHHHH
Q 011581 162 VKNMITGAAQ----MDGAILVVSGA-D--GPMPQTKEHILLAKQ------VGVPNMVVFLNKQDQVDD---EELLQLVEL 225 (482)
Q Consensus 162 ~~~~~~~~~~----~D~~ilVvda~-~--g~~~~t~e~l~~~~~------~~ip~iivviNK~D~~~~---~~~~~~i~~ 225 (482)
...+...+.. +|++|+|+|++ + ...........++.. .++| +++|+||+|+... .+..+.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~l~~ 147 (218)
T 1nrj_B 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTARPPSKIKDALES 147 (218)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHhcccCCHHHHHHHHHH
Confidence 7777777765 89999999998 3 333222222222222 3677 8999999999874 233333444
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHH
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
++..+.... ..+++++||++|.+
T Consensus 148 ~~~~~~~~~-----~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 148 EIQKVIERR-----KKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHH-----HHHHHC--------
T ss_pred HHHHHHHHH-----hccccccccccccc
Confidence 455544433 25788999998873
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=4.1e-15 Score=137.03 Aligned_cols=161 Identities=18% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh--
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 160 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~-- 160 (482)
....+|+++|++|+|||||+++|++... ........|.+.......+ .+ .+.++||||+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~--------------~~~~~~~~G~~~~~~~~~~--~~-~~~l~Dt~G~~~~~ 86 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKS--------------LARTSKTPGRTQLINLFEV--AD-GKRLVDLPGYGYAE 86 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEEEEE--ET-TEEEEECCCCC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc--------------cccccCCCccceeeEEEEe--cC-CEEEEECcCCcccc
Confidence 3457899999999999999999975320 0001123344443332222 22 578999999842
Q ss_pred --------hHHH---HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 161 --------YVKN---MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 161 --------~~~~---~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
|... .......+|++++++|+..+......+...++...++| ++++.||+|+.+..++...+ ..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~~~~~-~~~~~ 164 (210)
T 1pui_A 87 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGARKAQL-NMVRE 164 (210)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHHHHHH-HHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEecccCCCchhHHHHH-HHHHH
Confidence 3222 22223578999999999988776666666677778898 77889999998754332212 25566
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
++...+. .++++|+||+++. |+.++++.|.+.+
T Consensus 165 ~~~~~~~---~~~~~~~Sal~~~------------------~~~~l~~~l~~~~ 197 (210)
T 1pui_A 165 AVLAFNG---DVQVETFSSLKKQ------------------GVDKLRQKLDTWF 197 (210)
T ss_dssp HHGGGCS---CEEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred HHHhcCC---CCceEEEeecCCC------------------CHHHHHHHHHHHH
Confidence 6655432 3688999999987 7888888887754
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.61 E-value=3.2e-15 Score=143.27 Aligned_cols=119 Identities=12% Similarity=0.069 Sum_probs=81.4
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 161 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~ 161 (482)
....++|+++|++|+|||||+|+|++... .......+.|.......+..++..++||||||+.+|
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQV---------------VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCC---------------SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 45689999999999999999999986311 111223445666666667778899999999998765
Q ss_pred -------HHHHHhhc--ccCCeEEEeecCCC-CChHHHHHHHHHHHHc-C---CCcEEEEEecCCCCC
Q 011581 162 -------VKNMITGA--AQMDGAILVVSGAD-GPMPQTKEHILLAKQV-G---VPNMVVFLNKQDQVD 215 (482)
Q Consensus 162 -------~~~~~~~~--~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~-~---ip~iivviNK~D~~~ 215 (482)
.......+ ..+|++++|+|.+. .......+.+..+... + ..++++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 22232222 27899999987765 3444455555555543 2 123889999999963
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.60 E-value=3.2e-15 Score=161.82 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=54.1
Q ss_pred eEEEEEeCCCchh---hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHH-HHHHcCCCcEEEEEecCCCCCh
Q 011581 148 RHYAHVDCPGHAD---YVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL-LAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 148 ~~i~liDtPG~~~---~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~-~~~~~~ip~iivviNK~D~~~~ 216 (482)
..+.||||||+.+ ....+..++..+|++|+|+|++.+......+.+. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999766 3455667778999999999999988877777664 44556778 8999999998753
No 174
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.59 E-value=6e-15 Score=134.41 Aligned_cols=161 Identities=19% Similarity=0.153 Sum_probs=93.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY- 161 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~- 161 (482)
...++|+++|.+|+|||||+++|++...... . .. ...|.+.......++.....+.+|||+|....
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~----------~--~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~ 70 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMD----------S--DX-EVLGEDTYERTLMVDGESATIILLDMWENKGEN 70 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----------------GGGCTTEEEEEEEETTEEEEEEEECCCCC----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcC----------c--cc-cccceeEEEEEEEECCeEEEEEEEEeccCcchh
Confidence 3468999999999999999999986311000 0 00 01222222222222222335678999997652
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHHH-HHHHHHHH----cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ----VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t~-e~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
.......++.+|++++|+|.++....+.. +.+..+.. .++| +++|.||+|+........ .+...+...+
T Consensus 71 ~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~r~v~~---~~~~~~a~~~-- 144 (192)
T 2cjw_A 71 EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRXREVSV---SEGRAXAVVF-- 144 (192)
T ss_dssp CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGGCCSCH---HHHHHHHHHT--
T ss_pred hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhccccccH---HHHHHHHHHh--
Confidence 11222334678999999999874432322 22233332 2677 899999999864221110 1222222332
Q ss_pred CCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 237 ~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
.++++++||++|. |+.++++.|.+.+
T Consensus 145 ---~~~~~e~SA~~g~------------------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 ---DXKFIETSAAVQH------------------NVKELFEGIVRQV 170 (192)
T ss_dssp ---TCEEEECBTTTTB------------------SHHHHHHHHHHHH
T ss_pred ---CCceEEeccccCC------------------CHHHHHHHHHHHH
Confidence 2589999999998 7888888876644
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.58 E-value=1.1e-15 Score=161.27 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=92.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeee------eeEe--ecCCeEEEEE
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA------TVEY--ETENRHYAHV 153 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~------~~~~--~~~~~~i~li 153 (482)
....++|+++|.+|+|||||+++|++...... .....|.++... ...+ +..+..+.+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~--------------~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPK--------------ESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCccceEEEEeccccccceeecCCCceEEEEEE
Confidence 45678999999999999999999986421100 001112222211 1111 1235789999
Q ss_pred eCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcC--CCcEEEEEecCCCCChHHHHHHHHHHHHHHH
Q 011581 154 DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG--VPNMVVFLNKQDQVDDEELLQLVELEVRELL 231 (482)
Q Consensus 154 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~--ip~iivviNK~D~~~~~~~~~~i~~~i~~~l 231 (482)
||||++.|.......++.+|++|+|+|++.. ......+..+...+ .| +|+|+||+|+.+..+.. .+++++.+
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~~~~~v~---~~~~~~~~ 177 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSP-VIVVMNKIDENPSYNIE---QKKINERF 177 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCC-EEEEECCTTTCTTCCCC---HHHHHHHC
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCC-EEEEEECCCcccccccC---HHHHHHHH
Confidence 9999998877766777889999999999864 33444555555544 77 88999999997633211 12445555
Q ss_pred hhcCCCCCCccEEEcchhhhH
Q 011581 232 SSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 232 ~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
...+ .+++++||++|.
T Consensus 178 ~~~~-----~~~~~vSA~~g~ 193 (535)
T 3dpu_A 178 PAIE-----NRFHRISCKNGD 193 (535)
T ss_dssp GGGT-----TCEEECCC----
T ss_pred HhcC-----CceEEEecCccc
Confidence 5544 579999999998
No 176
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.58 E-value=7.4e-15 Score=143.21 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=92.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhHH---
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK--- 163 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~--- 163 (482)
||+++|..|+|||||++++.+... .......+.|+......+. ....+.||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~---------------~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ---------------PLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC---------------SGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC---------------CCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 589999999999999998753210 0001112334433333332 346799999999999953
Q ss_pred HHHhhcccCCeEEEeecCCCCChHHHHHHH----HHHHH--cCCCcEEEEEecCCCCChHHHH---HHHHHHHHHHHhhc
Q 011581 164 NMITGAAQMDGAILVVSGADGPMPQTKEHI----LLAKQ--VGVPNMVVFLNKQDQVDDEELL---QLVELEVRELLSSY 234 (482)
Q Consensus 164 ~~~~~~~~~D~~ilVvda~~g~~~~t~e~l----~~~~~--~~ip~iivviNK~D~~~~~~~~---~~i~~~i~~~l~~~ 234 (482)
.+..+++.++++|+|+|+++. .....+.+ ..+.. .++| ++++.||+|+.+.+++. +.+..+..+.+.+.
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCc-EEEEEECcccCchhhhhhHHHHhhHHHHHHHHhh
Confidence 345677899999999999987 43333333 22222 3677 88999999998754332 23333333333333
Q ss_pred CCCCCCccEEEcchhhh
Q 011581 235 EFPGDDVPIISGSALLA 251 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g 251 (482)
++...+++|+.+||++.
T Consensus 143 ~~~~~~i~f~eTSAkd~ 159 (331)
T 3r7w_B 143 GLDGVQVSFYLTSIFDH 159 (331)
T ss_dssp SCSCCCEEEECCCSSSS
T ss_pred cccccCceEEEeccCCC
Confidence 22223689999999873
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.57 E-value=6.2e-15 Score=134.91 Aligned_cols=155 Identities=18% Similarity=0.138 Sum_probs=98.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCchhhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYV 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~~~~ 162 (482)
.++|+++|+.|+|||||+++|++... ..+....++.+.....+..++ ..+.+|||||+++|.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~----------------~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF----------------NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC----------------CC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC----------------CCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 57999999999999999999986411 011112222233233344444 456789999999886
Q ss_pred HHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCC
Q 011581 163 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPG 238 (482)
Q Consensus 163 ~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 238 (482)
.........+|++++|+|..+....+. ...+..+.. .+.| +++++||+|+....+... .+.+.+....+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~---~~a~~l~~~~~--- 141 (199)
T 2f9l_A 69 RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKNN--- 141 (199)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGGCCSCH---HHHHHHHHHTT---
T ss_pred hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCcCH---HHHHHHHHHcC---
Confidence 555556678999999999987544332 223333332 2455 889999999964221110 13344554433
Q ss_pred CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 239 DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 239 ~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++++.+||+++. |+.++++.|.+.
T Consensus 142 --~~~~d~Sal~~~------------------~i~~l~~~l~~~ 165 (199)
T 2f9l_A 142 --LSFIETSALDST------------------NVEEAFKNILTE 165 (199)
T ss_dssp --CEEEECCTTTCT------------------THHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 678999999987 667777666553
No 178
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.57 E-value=2e-15 Score=147.27 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=66.0
Q ss_pred CeEEEEEeCCCch-------------hhHHHHHhhcccCCeEE-EeecCCCCChHHHH-HHHHHHHHcCCCcEEEEEecC
Q 011581 147 NRHYAHVDCPGHA-------------DYVKNMITGAAQMDGAI-LVVSGADGPMPQTK-EHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 147 ~~~i~liDtPG~~-------------~~~~~~~~~~~~~D~~i-lVvda~~g~~~~t~-e~l~~~~~~~ip~iivviNK~ 211 (482)
...+.||||||+. .+...+..++..+|.+| +|+|++.+...+.. ..+..+...+.| +++|+||+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~-~i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS-EEEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCe-EEEEEEcc
Confidence 4689999999963 34555666777888766 69999988777664 455666656788 88999999
Q ss_pred CCCChHH-HHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhH
Q 011581 212 DQVDDEE-LLQLVELEVRELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 212 D~~~~~~-~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
|+.+... ..+ .++..+. .+.....+++++||++|.
T Consensus 203 Dl~~~~~~~~~----~~~~~~~--~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 203 DLMDEGTDARD----VLENKLL--PLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp GGSCTTCCCHH----HHTTCSS--CCTTCEEECCCCCCBCTT
T ss_pred ccCCCCchHHH----HHhCCcC--cCCCCcEEEECCChhhcc
Confidence 9986432 111 1111111 111123578899999987
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=5.4e-15 Score=148.10 Aligned_cols=175 Identities=19% Similarity=0.237 Sum_probs=89.8
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe--EEEEEeCCCc
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYAHVDCPGH 158 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPG~ 158 (482)
.+...++|+++|++|+|||||+++|++....... .......+...++++......+...+. .+++|||||+
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~-------~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPER-------VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC-------cccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 4456789999999999999999998653110000 001111112233344333333343443 6899999999
Q ss_pred hhhHH-----------------HHHhhcc----------cCCeEEEeecC-CCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 159 ADYVK-----------------NMITGAA----------QMDGAILVVSG-ADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 159 ~~~~~-----------------~~~~~~~----------~~D~~ilVvda-~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
.++.. ..+.... .+|+++++|+. ..+......+.+..+. .++| +|+|+||
T Consensus 106 gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~p-iIlV~NK 183 (361)
T 2qag_A 106 GDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAK 183 (361)
T ss_dssp ----------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SC-EEEEEEC
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCC-EEEEEEC
Confidence 43321 1111111 23578888886 5566666665555443 4678 8999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 211 QDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 211 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
+|+.+..+... .+.++.++++..+ ++++++||++|.+ .+.+..+++.|...+|.
T Consensus 184 ~Dl~~~~ev~~-~k~~i~~~~~~~~-----i~~~~~Sa~~~~~---------------~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 184 ADTLTLKERER-LKKRILDEIEEHN-----IKIYHLPDAESDE---------------DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp CSSSCHHHHHH-HHHHHHHHTTCC------CCSCCCC------------------------CHHHHHHHHHTCSC
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHCC-----CCEEeCCCcCCCc---------------chhHHHHHHHHHhcCCC
Confidence 99998654432 3346666666543 6889999998872 01345677777776653
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.56 E-value=2.7e-15 Score=147.51 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCchh-------------hHHHHHhhcccCCeEEEeecC-CCCChHHH-HHHHHHHHHcCCCcEEEEEec
Q 011581 146 ENRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVSG-ADGPMPQT-KEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 146 ~~~~i~liDtPG~~~-------------~~~~~~~~~~~~D~~ilVvda-~~g~~~~t-~e~l~~~~~~~ip~iivviNK 210 (482)
....+.||||||+.+ +...+..++..+|++++|+|+ +.+...+. .+.+..+...+.| +++|+||
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEcC
Confidence 457899999999753 556677788899999999997 55555333 3566666667888 8899999
Q ss_pred CCCCChH
Q 011581 211 QDQVDDE 217 (482)
Q Consensus 211 ~D~~~~~ 217 (482)
+|+.+..
T Consensus 208 ~Dl~~~~ 214 (315)
T 1jwy_B 208 LDLMDKG 214 (315)
T ss_dssp TTSSCSS
T ss_pred cccCCcc
Confidence 9998643
No 181
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.55 E-value=1.3e-14 Score=145.21 Aligned_cols=176 Identities=19% Similarity=0.150 Sum_probs=103.8
Q ss_pred ccCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccc-----c-----c-cCChhh---hcCCceeeeee------
Q 011581 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYD-----E-----I-DAAPEE---RARGITINTAT------ 140 (482)
Q Consensus 81 ~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~-----~-----~-d~~~~e---~~~g~Ti~~~~------ 140 (482)
.....++|+++|++|+|||||+++|.......|........ . + |....+ ...+..+....
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLG 154 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHH
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCcccc
Confidence 34567899999999999999999998776544432110000 0 0 000000 01111110000
Q ss_pred ----------eEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 141 ----------VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 141 ----------~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
..++..+..+.||||||...-.. ..+..+|++|+|+|+..+...+... ....+.| .++|+||
T Consensus 155 ~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~---~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p-~ivVlNK 226 (355)
T 3p32_A 155 GVTRATRETVVLLEAAGFDVILIETVGVGQSEV---AVANMVDTFVLLTLARTGDQLQGIK----KGVLELA-DIVVVNK 226 (355)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSCSSHHH---HHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGC-SEEEEEC
T ss_pred chhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHH---HHHHhCCEEEEEECCCCCccHHHHH----HhHhhcC-CEEEEEC
Confidence 01234678899999999654322 2347899999999988665432211 0112456 6789999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCC--CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcC
Q 011581 211 QDQVDDEELLQLVELEVRELLSSYEFPG--DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283 (482)
Q Consensus 211 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l 283 (482)
+|+.+..... ....++.+.+..+.... ...|++++||++|. |+++|++.|.+.+
T Consensus 227 ~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~------------------Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 227 ADGEHHKEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGR------------------GLAELWDTVERHR 282 (355)
T ss_dssp CCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB------------------SHHHHHHHHHHHH
T ss_pred CCCcChhHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCC------------------CHHHHHHHHHHHH
Confidence 9997643322 23335555554432111 14789999999998 7788888777654
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.53 E-value=3.8e-14 Score=140.95 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=98.0
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcc-----------cccccCChhhh----cCCceeeee-------
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKK-----------YDEIDAAPEER----ARGITINTA------- 139 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~-----------~~~~d~~~~e~----~~g~Ti~~~------- 139 (482)
......|+++|++|+|||||++.|++.....+...... ....+....+. ..+.-....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 34567899999999999999999987654433211000 00001000000 011100000
Q ss_pred --------eeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 140 --------TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 140 --------~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
...+++.+..++||||||+.++.... ...+|++++|+|+..+...+.... ...++| .++|+||+
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p-~ivv~NK~ 204 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVA-DLIVINKD 204 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHC-SEEEECCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhccc-CEEEEECC
Confidence 00122567889999999987765443 478999999999986543221111 112456 57899999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCC--CCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 212 DQVDDEELLQLVELEVRELLSSYEFPG--DDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 212 D~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
|+.+..+... ...++++.+..++... ...+++++||++|. |+.+|++.|.+.
T Consensus 205 Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~------------------gi~~L~~~l~~~ 258 (341)
T 2p67_A 205 DGDNHTNVAI-ARHMYESALHILRRKYDEWQPRVLTCSALEKR------------------GIDEIWHAIIDF 258 (341)
T ss_dssp CTTCHHHHHH-HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB------------------SHHHHHHHHHHH
T ss_pred CCCChHHHHH-HHHHHHHHHHhccccccCCCCcEEEeeCCCCC------------------CHHHHHHHHHHH
Confidence 9987533322 2235555544433110 13578999999998 777777776654
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=2.2e-14 Score=145.11 Aligned_cols=83 Identities=20% Similarity=0.177 Sum_probs=46.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeE--ee-------------------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE--YE------------------- 144 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~--~~------------------- 144 (482)
++|+++|.+|+|||||+|+|++.....+. ..+.|++..... +.
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~----------------~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~ 64 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIAN----------------YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCcccCCceEEEeeccCCchHHhhhhcccccccc
Confidence 47999999999999999999865321111 112232221111 10
Q ss_pred cC---CeEEEEEeCCCchhh-------HHHHHhhcccCCeEEEeecCCCC
Q 011581 145 TE---NRHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSGADG 184 (482)
Q Consensus 145 ~~---~~~i~liDtPG~~~~-------~~~~~~~~~~~D~~ilVvda~~g 184 (482)
.+ ...+.||||||+.+. ....+..++.+|++++|+|++++
T Consensus 65 ~~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ETTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred cCCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 246899999998543 12223456899999999999875
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.4e-14 Score=128.93 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 162 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~~ 162 (482)
...++|+++|+.|+|||||+++|++..... .......+++. ......+.||||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~-------------~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-------------TVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc-------------ccccCCCceee-------eecCCeEEEEECCCCchHH
Confidence 456899999999999999999998641100 00001111111 1245678999999998775
Q ss_pred HHHHhhcc----cCCeEEEeecCC-CCCh-HHHHHHHHHHH-H------cCCCcEEEEEecCCCCCh
Q 011581 163 KNMITGAA----QMDGAILVVSGA-DGPM-PQTKEHILLAK-Q------VGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 163 ~~~~~~~~----~~D~~ilVvda~-~g~~-~~t~e~l~~~~-~------~~ip~iivviNK~D~~~~ 216 (482)
..+...+. .+|++|+|+|++ +... ....+.+..+. . .++| +++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSELFTA 171 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTSTTC
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHhcCC
Confidence 44444443 489999999998 3211 12222222221 1 3677 8999999999763
No 185
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=138.62 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=56.5
Q ss_pred cCCeEEEeecCCCC--Ch-HHHHHHHHHHH----HcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccE
Q 011581 171 QMDGAILVVSGADG--PM-PQTKEHILLAK----QVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPI 243 (482)
Q Consensus 171 ~~D~~ilVvda~~g--~~-~~t~e~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~ 243 (482)
.+|++|+|+|+++. .. ....+.+..+. ..++| +++|.||+|+.+.... ++..++.+.. ..+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~~~~v-----~~~~~~~~~~----~~~~~ 231 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGVERYI-----RDAHTFALSK----KNLQV 231 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBCHHHH-----HHHHHHHHTS----SSCCE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccccccHHH-----HHHHHHHHhc----CCCeE
Confidence 68999999999885 32 22233333332 24678 8999999999764332 2444454432 13689
Q ss_pred EEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 244 ISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 244 i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+++||++|. |+.++++.|.+.
T Consensus 232 ~e~SAk~g~------------------gv~elf~~l~~~ 252 (255)
T 3c5h_A 232 VETSARSNV------------------NVDLAFSTLVQL 252 (255)
T ss_dssp EECBTTTTB------------------SHHHHHHHHHHH
T ss_pred EEEECCCCC------------------CHHHHHHHHHHH
Confidence 999999998 889999888654
No 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.50 E-value=4.3e-14 Score=128.54 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=100.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCe--EEEEEeCCCchhh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYAHVDCPGHADY 161 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~--~i~liDtPG~~~~ 161 (482)
..++|+++|+.|+|||||+++|++... +.+....++.+.....+..++. .+.+|||||+++|
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~----------------~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 91 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF----------------NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------------CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC----------------CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch
Confidence 458999999999999999999986411 1111222333333334444554 4567999999887
Q ss_pred HHHHHhhcccCCeEEEeecCCCCChHHH-HHHHHHHHH---cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCC
Q 011581 162 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237 (482)
Q Consensus 162 ~~~~~~~~~~~D~~ilVvda~~g~~~~t-~e~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 237 (482)
...+...+..+|++++|+|..+....+. ...+..+.. .+.| +++++||+|+.+..+... .+.+.+....
T Consensus 92 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~~~~~~---~~a~~l~~~~--- 164 (191)
T 1oix_A 92 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVPT---DEARAFAEKN--- 164 (191)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGCCSCH---HHHHHHHHHT---
T ss_pred hhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccCH---HHHHHHHHHc---
Confidence 6655556677899999999886433222 222222332 2455 889999999864221111 1334444443
Q ss_pred CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 238 ~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.++++.+||+++. |+.++++.|.+.
T Consensus 165 --~~~~ld~Sald~~------------------~v~~l~~~l~~~ 189 (191)
T 1oix_A 165 --GLSFIETSALDST------------------NVEAAFQTILTE 189 (191)
T ss_dssp --TCEEEECCTTTCT------------------THHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCC------------------CHHHHHHHHHHH
Confidence 3678999999988 788888887653
No 187
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=138.10 Aligned_cols=173 Identities=17% Similarity=0.115 Sum_probs=92.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCccc----------------ccccCChhhhc------------CCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKY----------------DEIDAAPEERA------------RGI 134 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~----------------~~~d~~~~e~~------------~g~ 134 (482)
.....|+++|++|+|||||+|+|++.....+....-.. ..+.....+.. .|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999986543322100000 00000000000 011
Q ss_pred eeeee--eeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 135 TINTA--TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 135 Ti~~~--~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
|.+.. ...++..+..+.|+||||..... ......+|++++|+|+..+...+. +.. ..+..| .++|+||+|
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~-~ivVlNK~D 223 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMA-DLVAVTKSD 223 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSC-SEEEECCCS
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcC-CEEEEeeec
Confidence 11110 00123467789999999964322 222467999999999987643221 111 124567 578899999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCC--CCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 213 QVDDEELLQLVELEVRELLSSYEFP--GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 213 ~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+.+...... ...++...++..... ....+++++||++|. |+.+|+++|.+.
T Consensus 224 l~~~~~~~~-~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~------------------Gi~~L~~~I~~~ 276 (349)
T 2www_A 224 GDLIVPARR-IQAEYVSALKLLRKRSQVWKPKVIRISARSGE------------------GISEMWDKMKDF 276 (349)
T ss_dssp GGGHHHHHH-HHHHHHHHHTTCC-----CCCEEEECCTTTCT------------------THHHHHHHHHHH
T ss_pred CCCchhHHH-HHHHHHHHHHhcCccccCCCceEEEEecCCCC------------------CHHHHHHHHHHH
Confidence 976433221 122444444332110 113688999999998 777777777654
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=3.4e-13 Score=142.09 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=87.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh---cCCCCCccc--ccccCChhhhcCCceee------------------eee
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS---LGNSAPKKY--DEIDAAPEERARGITIN------------------TAT 140 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~---~g~~~~~~~--~~~d~~~~e~~~g~Ti~------------------~~~ 140 (482)
..++|+++|++|+|||||+|+|++.... .+....... ........+...|.+.. ...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999975321 111111100 00000000000111100 000
Q ss_pred eEeecCC---eEEEEEeCCCchh-----------hHHHHHhhcccCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCcEE
Q 011581 141 VEYETEN---RHYAHVDCPGHAD-----------YVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMV 205 (482)
Q Consensus 141 ~~~~~~~---~~i~liDtPG~~~-----------~~~~~~~~~~~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~ii 205 (482)
..+...+ ..++||||||+.+ |...+...+..+|++|+|+|+++ +...++.+++..+...+.| ++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vi 222 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IR 222 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EE
Confidence 1111111 3689999999875 66777778889999999999988 6778888888887777777 89
Q ss_pred EEEecCCCCChHHHH
Q 011581 206 VFLNKQDQVDDEELL 220 (482)
Q Consensus 206 vviNK~D~~~~~~~~ 220 (482)
+|+||+|+.+.++..
T Consensus 223 lVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 223 VVLNKADMVETQQLM 237 (550)
T ss_dssp EEEECGGGSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 999999999865543
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.42 E-value=5e-14 Score=140.81 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=91.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh-cCCCC-Ccccc-------------c--------ccCC--hhh------hc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS-LGNSA-PKKYD-------------E--------IDAA--PEE------RA 131 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~-~~~~~-------------~--------~d~~--~~e------~~ 131 (482)
...++|+++|.+|+|||||+|+|++.... .+.+. ..... + .+.. ..+ +.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 44679999999999999999999865321 11100 00000 0 0000 000 11
Q ss_pred ----CCceeeeeeeEee-cCCeEEEEEeCCCch-------------hhHHHHHhhcccC-CeEEEeecCCCCChHHHH-H
Q 011581 132 ----RGITINTATVEYE-TENRHYAHVDCPGHA-------------DYVKNMITGAAQM-DGAILVVSGADGPMPQTK-E 191 (482)
Q Consensus 132 ----~g~Ti~~~~~~~~-~~~~~i~liDtPG~~-------------~~~~~~~~~~~~~-D~~ilVvda~~g~~~~t~-e 191 (482)
.|+........+. .+...++||||||.. .+...+..++..+ |++++|+|++.+...+.. +
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 3332222222222 235679999999953 3344444555544 566667888877766654 3
Q ss_pred HHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHH
Q 011581 192 HILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 192 ~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
.++.+...+.| +++|+||+|+.+...... ..+.. +.+.+.....+++++||++|.+
T Consensus 189 i~~~~~~~~~~-~i~V~NK~Dl~~~~~~~~---~~~~~--~~~~l~~~~~~v~~~SA~~~~~ 244 (353)
T 2x2e_A 189 VAKEVDPQGQR-TIGVITKLDLMDEGTDAR---DVLEN--KLLPLRRGYIGVVNRSQKDIDG 244 (353)
T ss_dssp HHHHHCTTCTT-EEEEEECGGGSCTTCCCH---HHHTT--CSSCCTTCEEECCCCCHHHHHT
T ss_pred HHHHhCcCCCc-eEEEeccccccCcchhHH---HHHhC--CcccccCCceEEEeCCcccccc
Confidence 55555556788 889999999986422111 01111 0111111125678899999874
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=7.7e-13 Score=134.09 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=96.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-eEEEEEeCCCchh----
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-RHYAHVDCPGHAD---- 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-~~i~liDtPG~~~---- 160 (482)
..|+++|++|+|||||+++|++....... ....|.......+..++ ..++++|+||+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~----------------~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP----------------YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC----------------CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccC----------------cccceecceeeEEEecCcceEEEEeccccccchhh
Confidence 45899999999999999999754211111 11123333333344443 7899999999743
Q ss_pred ---hHHHHHhhcccCCeEEEeecCCCCChHHH----HHHHHHHHH-cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHh
Q 011581 161 ---YVKNMITGAAQMDGAILVVSGADGPMPQT----KEHILLAKQ-VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232 (482)
Q Consensus 161 ---~~~~~~~~~~~~D~~ilVvda~~g~~~~t----~e~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~ 232 (482)
+.......+..+|.+++|+|++.....+. ++...++.. ...| .++++||+|+... +..+ ++.+.++
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~~~-~~~~----~l~~~l~ 295 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLLEE-EAVK----ALADALA 295 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTSCH-HHHH----HHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChhhH-HHHH----HHHHHHH
Confidence 12233444567999999999972222222 122222221 2567 6778899999875 3222 4444444
Q ss_pred hcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 233 SYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 233 ~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.. ..+++++||+++. |+.+|++.|.+.+.
T Consensus 296 ~~-----g~~vi~iSA~~g~------------------gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 RE-----GLAVLPVSALTGA------------------GLPALKEALHALVR 324 (416)
T ss_dssp TT-----TSCEEECCTTTCT------------------THHHHHHHHHHHHH
T ss_pred hc-----CCeEEEEECCCcc------------------CHHHHHHHHHHHHH
Confidence 33 3689999999998 88888888877653
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.39 E-value=1.3e-13 Score=128.15 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=96.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcc----cccccCChhhhcCCceee-eee---eEe----------e
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKK----YDEIDAAPEERARGITIN-TAT---VEY----------E 144 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~----~~~~d~~~~e~~~g~Ti~-~~~---~~~----------~ 144 (482)
...++|+++|++|+|||||+++|++......+ .... ....|.... ...|.++. ... ..+ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~-~~~i~~d~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVK-IGAMLGDVVSKADYERV-RRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSC-EEEEECSCCCHHHHHHH-HTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCe-EEEEecCCCCchhHHHH-HhCCCcEEEecCCceeecccHHHHHHHHh
Confidence 35679999999999999999999976422110 0000 000011011 11233311 111 111 3
Q ss_pred cCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH-HHHHHH
Q 011581 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE-ELLQLV 223 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~i 223 (482)
..+..+.+|||+|+...- .......+.+++|+|+..+...+. ......+.| +++|+||+|+.+.. ...+
T Consensus 106 ~~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~~~----~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~-- 175 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDVVE----KHPEIFRVA-DLIVINKVALAEAVGADVE-- 175 (221)
T ss_dssp GTTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTHHH----HCHHHHHTC-SEEEEECGGGHHHHTCCHH--
T ss_pred cCCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchhhh----hhhhhhhcC-CEEEEecccCCcchhhHHH--
Confidence 356789999999951100 001125688999999988754322 222334677 67899999986421 1122
Q ss_pred HHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 224 ELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++.+.++.++ ...+++++||++|. |+.+|+++|.+.+.
T Consensus 176 --~~~~~~~~~~---~~~~i~~~Sa~~g~------------------gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 176 --KMKADAKLIN---PRAKIIEMDLKTGK------------------GFEEWIDFLRGILN 213 (221)
T ss_dssp --HHHHHHHHHC---TTSEEEECBTTTTB------------------THHHHHHHHHHHHC
T ss_pred --HHHHHHHHhC---CCCeEEEeecCCCC------------------CHHHHHHHHHHHHH
Confidence 2333333332 24789999999998 88999998887553
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.37 E-value=3.1e-13 Score=145.47 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=97.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcc--------------cccccCC----------hh------hh-
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKK--------------YDEIDAA----------PE------ER- 130 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~--------------~~~~d~~----------~~------e~- 130 (482)
-..++|+++|+.++|||||+|+|++... ..|.+..+. ..++... .. +.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4568999999999999999999997522 112111100 0000000 00 00
Q ss_pred ---cCCceeeeeeeEeec-CCeEEEEEeCCCchh-------------hHHHHHhhc-ccCCeEEEeecCCCCChHHHH-H
Q 011581 131 ---ARGITINTATVEYET-ENRHYAHVDCPGHAD-------------YVKNMITGA-AQMDGAILVVSGADGPMPQTK-E 191 (482)
Q Consensus 131 ---~~g~Ti~~~~~~~~~-~~~~i~liDtPG~~~-------------~~~~~~~~~-~~~D~~ilVvda~~g~~~~t~-e 191 (482)
..|++-+.....+.. ....++|+||||... +...+..++ ..+|++++|+|++.++..+.. +
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 123332222222222 345799999999532 233334444 478999999999998877766 6
Q ss_pred HHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHH
Q 011581 192 HILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 192 ~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
.+..+...+.| +|+|+||+|+++...... .+.. -+.+.+.....+++++||++|.+
T Consensus 209 ll~~L~~~g~p-vIlVlNKiDlv~~~~~~~----~il~-~~~~~l~lg~~~VV~iSA~~G~G 264 (772)
T 3zvr_A 209 IAKEVDPQGQR-TIGVITKLDLMDEGTDAR----DVLE-NKLLPLRRGYIGVVNRSQKDIDG 264 (772)
T ss_dssp HHHHHCTTCSS-EEEEEECTTSSCTTCCSH----HHHT-TCSSCCSSCEEECCCCCCEESSS
T ss_pred HHHHHHhcCCC-EEEEEeCcccCCcchhhH----HHHH-HHhhhhhccCCceEEeccccccc
Confidence 77777777888 889999999987432211 1111 00111111235788999998764
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.37 E-value=6.4e-13 Score=133.16 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=64.1
Q ss_pred CCeEEEEEeCCCchhh-------------HHHHHhhcccCCeEEEeecCCC-CCh-HHHHHHHHHHHHcCCCcEEEEEec
Q 011581 146 ENRHYAHVDCPGHADY-------------VKNMITGAAQMDGAILVVSGAD-GPM-PQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~-------------~~~~~~~~~~~D~~ilVvda~~-g~~-~~t~e~l~~~~~~~ip~iivviNK 210 (482)
....++||||||..++ ...+..++..+|++|+|+|+.. ... ....+.+..+...+.| +|+|+||
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~nK 212 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLTK 212 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEEC
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEeC
Confidence 3567999999998776 5566677889999999998754 222 2334444444445777 8899999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhHH
Q 011581 211 QDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253 (482)
Q Consensus 211 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~ 253 (482)
+|+.+..... .+.++..... ...+|+++|+..+.+
T Consensus 213 ~Dl~~~~~~~-------~~~~~~~~~~-~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 213 IDLMDKGTDA-------VEILEGRSFK-LKYPWVGVVNRSQAD 247 (360)
T ss_dssp GGGCCTTCCS-------HHHHTTSSSC-CSSCCEEECCCCHHH
T ss_pred CccCCCcccH-------HHHHcCcccc-ccCCeEEEEECChHH
Confidence 9998643211 1122222211 246788888887764
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=9.1e-12 Score=118.75 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=71.8
Q ss_pred eEEEEEeCCCchhhHH------HHHhhcccCCeEEEeecCCCCChHHHHHH-----HHHHHHcCCCcEEEEEecCCCCCh
Q 011581 148 RHYAHVDCPGHADYVK------NMITGAAQMDGAILVVSGADGPMPQTKEH-----ILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 148 ~~i~liDtPG~~~~~~------~~~~~~~~~D~~ilVvda~~g~~~~t~e~-----l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
+.+.||||||+.++.. .+...+.. +++|+|+|+........... .......++| +++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC-EEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCC-eEEEEeccccccc
Confidence 5799999999877642 23345556 89999999876655443221 1223345788 7899999999874
Q ss_pred HHHHHHHHHH---HHH---------------------HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhH
Q 011581 217 EELLQLVELE---VRE---------------------LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKI 272 (482)
Q Consensus 217 ~~~~~~i~~~---i~~---------------------~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi 272 (482)
.+. +.+.+. +.. +++.++. ..+++++||++|. |+
T Consensus 187 ~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SA~~~~------------------gi 244 (262)
T 1yrb_A 187 EEK-ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP---PVRVLYLSAKTRE------------------GF 244 (262)
T ss_dssp HHH-HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC---CCCCEECCTTTCT------------------TH
T ss_pred ccH-HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC---cccceEEEecCcc------------------cH
Confidence 321 111111 111 1233332 2578999999998 88
Q ss_pred HHHHHHhhhcC
Q 011581 273 YELMDSVDSYI 283 (482)
Q Consensus 273 ~~Ll~~l~~~l 283 (482)
++|+++|.+.+
T Consensus 245 ~~l~~~i~~~~ 255 (262)
T 1yrb_A 245 EDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887754
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=124.53 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh-cCCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCch
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS-LGNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHA 159 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~ 159 (482)
.-.++|+++|+.|+|||||++.|++.... .+.+.. ..+ ....+........+... ...+++|||||+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~----~~~-----~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP----SHR-----IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC----C----------CCEEEEEECC------CEEEEEEECC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc----ccC-----CccceeeeeEEEEEecCCcccceeeeechhhh
Confidence 44578999999999999999999864221 110000 000 01111111111111212 2368999999987
Q ss_pred hhHH------HH--------Hh-----------hcc--cCCeEEEeecCC-CCChHHHHHHHHHHHHcCCCcEEEEEecC
Q 011581 160 DYVK------NM--------IT-----------GAA--QMDGAILVVSGA-DGPMPQTKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 160 ~~~~------~~--------~~-----------~~~--~~D~~ilVvda~-~g~~~~t~e~l~~~~~~~ip~iivviNK~ 211 (482)
++.. .+ .. .+. .+|++|++++.+ .++.+...+.+..+.. +++ +|+|+||+
T Consensus 100 ~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~-iIlVinK~ 177 (418)
T 2qag_C 100 DAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVN-IIPLIAKA 177 (418)
T ss_dssp --------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSE-EEEEEEST
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCc-EEEEEEcc
Confidence 6531 11 01 112 245677777776 6888887777766654 777 89999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhhH
Q 011581 212 DQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 212 D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
|+....+.. ..+.++.+.+...+ ++++.+|+.++.
T Consensus 178 Dll~~~ev~-~~k~~i~~~~~~~~-----i~~~~~sa~~~~ 212 (418)
T 2qag_C 178 DTLTPEECQ-QFKKQIMKEIQEHK-----IKIYEFPETDDE 212 (418)
T ss_dssp TSSCHHHHH-HHHHHHHHHHHHHT-----CCCCCCC-----
T ss_pred cCccHHHHH-HHHHHHHHHHHHcC-----CeEEeCCCCCCc
Confidence 999865433 33456777777654 567888998776
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.28 E-value=2.3e-11 Score=120.66 Aligned_cols=82 Identities=23% Similarity=0.175 Sum_probs=55.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC-----------------e
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-----------------R 148 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-----------------~ 148 (482)
.+|+++|.+|+|||||+|+|++.....+ ...+.|++.....+...+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~----------------~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA----------------NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC----------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc----------------CCCCceECceEEEEecCCcccceeeeeecccceeee
Confidence 5899999999999999999997521111 112233333222233232 4
Q ss_pred EEEEEeCCCchhhHH-------HHHhhcccCCeEEEeecCCC
Q 011581 149 HYAHVDCPGHADYVK-------NMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 149 ~i~liDtPG~~~~~~-------~~~~~~~~~D~~ilVvda~~ 183 (482)
.+.||||||+.++.. ..+..++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 699999999877642 23445688999999999986
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.24 E-value=6.1e-12 Score=125.50 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=82.0
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh-
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD- 160 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~- 160 (482)
+....+|+++|.+|+|||||+|+|++.... .....+.|++.....+.+.+..+.|+||||..+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~----------------v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESE----------------AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCC----------------GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCc----------------ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 344568999999999999999999964221 223456788888888888999999999999532
Q ss_pred ------hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc-----CCCcEEEEEecCCCC
Q 011581 161 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-----GVPNMVVFLNKQDQV 214 (482)
Q Consensus 161 ------~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-----~ip~iivviNK~D~~ 214 (482)
....++..++.+|++++|+|+++...... .....+... ..| .++++||+|.-
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~-~~i~~nK~d~~ 195 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTP-PDILIKKKEKG 195 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCC-CCEEEEECSSS
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCccHHHHH-HHHHHHHHhhHhhccCC-hhhhhhHhhhh
Confidence 34566777889999999999987543211 111222222 345 56789999963
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=3e-11 Score=119.60 Aligned_cols=162 Identities=18% Similarity=0.128 Sum_probs=83.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccC-------ChhhhcCC---------------------c
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDA-------APEERARG---------------------I 134 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~-------~~~e~~~g---------------------~ 134 (482)
.+...++++|++|+|||||++.|++.....+............ .......+ .
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999987654322211000000000 00000000 0
Q ss_pred eeeee--eeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 135 TINTA--TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 135 Ti~~~--~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
|.+.. ...++..+..+.|+||||..+-... ....+|++++|+|+..+...+... ... ..++ .++++||+|
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~~~~i~--~~i--~~~~-~ivvlNK~D 204 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIK--KGI--FELA-DMIAVNKAD 204 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CC--TTH--HHHC-SEEEEECCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCcccHHHHH--HHH--hccc-cEEEEEchh
Confidence 00000 0013346788999999997543222 235799999999987543211000 000 1234 356779999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCC--CCCccEEEcchhhhH
Q 011581 213 QVDDEELLQLVELEVRELLSSYEFP--GDDVPIISGSALLAL 252 (482)
Q Consensus 213 ~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~~~i~~Sa~~g~ 252 (482)
+....+......+++...+...... ....+++++||+++.
T Consensus 205 l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~ 246 (337)
T 2qm8_A 205 DGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGK 246 (337)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCC
Confidence 8653332222223444433322200 013578999999987
No 199
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.18 E-value=5.8e-11 Score=117.94 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=84.9
Q ss_pred ceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-----------hHHHHHHHHHHHH----
Q 011581 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-----------MPQTKEHILLAKQ---- 198 (482)
Q Consensus 134 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-----------~~~t~e~l~~~~~---- 198 (482)
.|+......++.++..+.+|||+|+++|...+...+..+|++|+|+|.++-. .......+..+..
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 3443444556667889999999999999999999999999999999998721 2333444443332
Q ss_pred cCCCcEEEEEecCCCCChH----------------HHHHHHHHHHHHHHhhcCC--CCCCccEEEcchhhhHHHhhcCCC
Q 011581 199 VGVPNMVVFLNKQDQVDDE----------------ELLQLVELEVRELLSSYEF--PGDDVPIISGSALLALEALMANPS 260 (482)
Q Consensus 199 ~~ip~iivviNK~D~~~~~----------------~~~~~i~~~i~~~l~~~~~--~~~~~~~i~~Sa~~g~~~~~~~~~ 260 (482)
.++| +|+++||+|+.... .-.+...+-+...+..+.. ....+.++.+||+++.
T Consensus 259 ~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-------- 329 (353)
T 1cip_A 259 TDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-------- 329 (353)
T ss_dssp TTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH--------
T ss_pred cCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch--------
Confidence 3567 89999999984211 0011111122222222221 1245789999999998
Q ss_pred cccCcchhhhhHHHHHHHhhhc
Q 011581 261 IKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 261 ~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
|+.++++++.+.
T Consensus 330 ----------nV~~vF~~v~~~ 341 (353)
T 1cip_A 330 ----------NVQFVFDAVTDV 341 (353)
T ss_dssp ----------HHHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHH
Confidence 777777776553
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.17 E-value=9.9e-11 Score=114.08 Aligned_cols=154 Identities=17% Similarity=0.167 Sum_probs=78.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeec--CCeEEEEEeCCCc--
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET--ENRHYAHVDCPGH-- 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~--~~~~i~liDtPG~-- 158 (482)
.-.++|+++|+.|+|||||+++|.+.......+.. .+... ...++........++. ....+++|||||+
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~-----~~g~~--~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIS-----GAAEK--IERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcc-----cCCcc--cCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 34688999999999999999999754111111100 00000 0011111111111221 2357899999998
Q ss_pred -----hhhHH----------HHHhhcc----------cCCeEEEeecCCC-CChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 159 -----ADYVK----------NMITGAA----------QMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 159 -----~~~~~----------~~~~~~~----------~~D~~ilVvda~~-g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
+.|.. .....+. .+++++++++.+. ++.+...+.+..+. .+++ +++|+||.|
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~-iilV~~K~D 166 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVN-IVPVIAKAD 166 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSC-EEEEECCGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCC-EEEEEEeCC
Confidence 33211 1111111 2345777777654 57777665555443 2456 889999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcchhhh
Q 011581 213 QVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLA 251 (482)
Q Consensus 213 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g 251 (482)
+....+.. ..++++.++++..+ ++++++||++|
T Consensus 167 l~~~~e~~-~~~~~~~~~~~~~~-----~~~~e~Sa~~~ 199 (301)
T 2qnr_A 167 TLTLKERE-RLKKRILDEIEEHN-----IKIYHLPDAES 199 (301)
T ss_dssp GSCHHHHH-HHHHHHHHHHHHTT-----CCCCCCC----
T ss_pred CCCHHHHH-HHHHHHHHHHHHcC-----CeEEecCCccc
Confidence 98754432 22346677777654 57899999987
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.16 E-value=1.1e-10 Score=116.45 Aligned_cols=82 Identities=23% Similarity=0.200 Sum_probs=54.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEee---------------------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYE--------------------- 144 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~--------------------- 144 (482)
++|+++|.+|+|||||+|+|++.........+. |+........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~----------------Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFA----------------TIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG----------------GGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCc----------------eeccceeeEecChHHHHHHHHHhcccccccc
Confidence 579999999999999999999763222211111 1111111111
Q ss_pred cCCeEEEEEeCCCchhh-------HHHHHhhcccCCeEEEeecCCC
Q 011581 145 TENRHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~-------~~~~~~~~~~~D~~ilVvda~~ 183 (482)
.....+.||||||+.++ ....+..++.+|++++|+|+++
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 12356999999997654 3455667889999999999986
No 202
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.16 E-value=2.5e-10 Score=113.81 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=50.0
Q ss_pred eeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCC-----------ChHHHHHHHHHHHH----cCCCc
Q 011581 139 ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-----------PMPQTKEHILLAKQ----VGVPN 203 (482)
Q Consensus 139 ~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-----------~~~~t~e~l~~~~~----~~ip~ 203 (482)
....+..++..+.+|||+|++.|...+...+..++++|+|+|.++- -.......+..+.. .++|
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p- 270 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS- 270 (362)
T ss_dssp EEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE-
T ss_pred EEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC-
Confidence 3345566788899999999999999999999999999999999972 12233334433332 2567
Q ss_pred EEEEEecCCCC
Q 011581 204 MVVFLNKQDQV 214 (482)
Q Consensus 204 iivviNK~D~~ 214 (482)
+|+++||+|+.
T Consensus 271 iILv~NK~DL~ 281 (362)
T 1zcb_A 271 IILFLNKTDLL 281 (362)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 89999999985
No 203
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.14 E-value=5.4e-10 Score=90.18 Aligned_cols=81 Identities=30% Similarity=0.390 Sum_probs=70.1
Q ss_pred CCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEccccccCc
Q 011581 291 DLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADI 370 (482)
Q Consensus 291 ~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i 370 (482)
..|-.+.|..++..-+ |+++.|+|++|+|++|+.| |.+. ...+|++|+++++++++|.+||+|+++++|... ++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~-~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I 105 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS-GIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KV 105 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS-CEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CC
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc-eEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-cc
Confidence 4577888888555555 8999999999999999999 6541 368999999999999999999999999999877 99
Q ss_pred ccCeEEe
Q 011581 371 QRGMVLA 377 (482)
Q Consensus 371 ~~G~vl~ 377 (482)
++||+|.
T Consensus 106 ~~GdVLy 112 (116)
T 1xe1_A 106 KKGDVLE 112 (116)
T ss_dssp CTTCEEE
T ss_pred CCCcEEE
Confidence 9999985
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.04 E-value=3.3e-10 Score=117.25 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=74.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCC---------hhhhcCCceeeeee-------------e
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAA---------PEERARGITINTAT-------------V 141 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---------~~e~~~g~Ti~~~~-------------~ 141 (482)
+...|+++|++|+|||||++.|.......|...... ..|.. ......++.+.... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV--d~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~ 177 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI--CADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVE 177 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE--EECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE--eccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHH
Confidence 456899999999999999999997766555422110 01110 00112233322210 0
Q ss_pred EeecCCeEEEEEeCCCch----hhHHHHHhh--cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 142 EYETENRHYAHVDCPGHA----DYVKNMITG--AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 142 ~~~~~~~~i~liDtPG~~----~~~~~~~~~--~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+.+.++.++||||||.. .+...+... +..+|.+++|+|+..+.. ..+.+..+... +|..++|+||+|...
T Consensus 178 ~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 178 KFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp HHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred HHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 112367889999999965 333333222 237899999999998754 22333333321 452267899999875
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.01 E-value=3.6e-10 Score=105.03 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=88.8
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccc---cccCChhhhcCCce-eeee---eeE------------
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYD---EIDAAPEERARGIT-INTA---TVE------------ 142 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~---~~d~~~~e~~~g~T-i~~~---~~~------------ 142 (482)
....++|+++|+.|+|||||+++|+.......+....... ..|....+ ..|.. +... ...
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERME-KHGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHH-TTTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHH-hcCCcEEEecCCceEeccHHHHHHHHHH
Confidence 3467899999999999999999998764221110000000 00000000 00110 0000 000
Q ss_pred eecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH-HHH
Q 011581 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE-LLQ 221 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~-~~~ 221 (482)
+...+..+.++|++|..... ...-...+..+.|+|+..+...... .....+.| .++|+||+|+.+..+ ..+
T Consensus 114 l~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~-~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTA-DLIVINKIDLADAVGADIK 185 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTC-SEEEEECGGGHHHHTCCHH
T ss_pred HhcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh----hhhHhhcC-CEEEEeccccCchhHHHHH
Confidence 01123368999999942110 0111245677888886543321110 11123667 678999999864211 122
Q ss_pred HHHHHHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 222 LVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 222 ~i~~~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++.+.++.++ ...+++++||++|. |+.+|++.|.+.
T Consensus 186 ----~~~~~~~~~~---~~~~~~~~Sa~~g~------------------gv~~l~~~l~~~ 221 (226)
T 2hf9_A 186 ----KMENDAKRIN---PDAEVVLLSLKTME------------------GFDKVLEFIEKS 221 (226)
T ss_dssp ----HHHHHHHHHC---TTSEEEECCTTTCT------------------THHHHHHHHHHH
T ss_pred ----HHHHHHHHhC---CCCeEEEEEecCCC------------------CHHHHHHHHHHH
Confidence 3344444332 24689999999998 888999888654
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=1.9e-09 Score=108.93 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=83.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--eEEEEEeCCCch
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA 159 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~--~~i~liDtPG~~ 159 (482)
....++++++|+.|+|||||++.|++... .|... .....+.+.......+...+ ..++++|+||..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~-----------~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKF-EGEPA-----------THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccc-cCCcC-----------CCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 34456899999999999999999987521 01000 00012223322222222222 268999999964
Q ss_pred hh-------------HHH----HHh---hcc-------cC--C-eEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEe
Q 011581 160 DY-------------VKN----MIT---GAA-------QM--D-GAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLN 209 (482)
Q Consensus 160 ~~-------------~~~----~~~---~~~-------~~--D-~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviN 209 (482)
.. ... .+. ++. .+ | ++++|+|+..++...+.+.+..+. .++| +|+|+|
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~-vI~Vi~ 184 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVN-IIPIIA 184 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSE-EEEEES
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCC-EEEEEc
Confidence 22 111 111 111 12 2 466788998999888888777765 5676 899999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEEcch
Q 011581 210 KQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSA 248 (482)
Q Consensus 210 K~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~~Sa 248 (482)
|+|.+..++... +...+++.++..| ++++.+|.
T Consensus 185 KtD~Lt~~E~~~-l~~~I~~~L~~~g-----i~I~~is~ 217 (427)
T 2qag_B 185 KADAISKSELTK-FKIKITSELVSNG-----VQIYQFPT 217 (427)
T ss_dssp CGGGSCHHHHHH-HHHHHHHHHBTTB-----CCCCCCC-
T ss_pred chhccchHHHHH-HHHHHHHHHHHcC-----CcEEecCC
Confidence 999998766433 4446666565543 55666664
No 207
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.98 E-value=9.9e-09 Score=100.85 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=60.0
Q ss_pred ceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCC-----------CChHHHHHHHHHHHH----
Q 011581 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ---- 198 (482)
Q Consensus 134 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~~t~e~l~~~~~---- 198 (482)
.|+......++.++..+.+|||+|++.|...+...++.++++|+|+|.++ .-....++.+..+..
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 34444555667778899999999999999999999999999999999972 112333344433332
Q ss_pred cCCCcEEEEEecCCCCC
Q 011581 199 VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 199 ~~ip~iivviNK~D~~~ 215 (482)
.++| ++++.||+|+..
T Consensus 227 ~~~p-iiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAV-KLIFLNKMDLFE 242 (340)
T ss_dssp TTSE-EEEEEECHHHHH
T ss_pred CCCe-EEEEEECchhhh
Confidence 3566 899999999853
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=1.3e-08 Score=97.30 Aligned_cols=141 Identities=22% Similarity=0.289 Sum_probs=84.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhc-CCCCCcccccccCChhhhcCCceeeeeeeEeecC--CeEEEEEeCCCchh-
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHAD- 160 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~--~~~i~liDtPG~~~- 160 (482)
.++++++|+.|+|||||++.|++..... |...... .... .....+++.. .+... ...++++|+||...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g-~~i~--~~~~~~~i~~-----v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE-EKIP--KTVEIKAIGH-----VIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC-------------CC--CCCSCCEEEE-----SCC----CCEEEEECCCC--CC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC-cccC--cceeeeeeEE-----EeecCCCcCCceEEechhhhhh
Confidence 4689999999999999999999864321 1111100 0000 0000011111 11111 23689999999522
Q ss_pred ------------hH-----HHHHhh----------cccCCeEEEeecCC-CCChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 161 ------------YV-----KNMITG----------AAQMDGAILVVSGA-DGPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 161 ------------~~-----~~~~~~----------~~~~D~~ilVvda~-~g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
|. ...... +..++++++++|.. .|..+.+.+.+..+... ++ +|+|+||+|
T Consensus 74 ~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~-vI~Vi~K~D 151 (270)
T 3sop_A 74 INNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VN-IIPVIAKAD 151 (270)
T ss_dssp SBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SE-EEEEETTGG
T ss_pred cccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-Cc-EEEEEeccc
Confidence 11 111111 12468899999955 78999999988888876 66 899999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCC
Q 011581 213 QVDDEELLQLVELEVRELLSSYEF 236 (482)
Q Consensus 213 ~~~~~~~~~~i~~~i~~~l~~~~~ 236 (482)
....++... .+..+++.++..+.
T Consensus 152 ~lt~~e~~~-~k~~i~~~l~~~~i 174 (270)
T 3sop_A 152 TMTLEEKSE-FKQRVRKELEVNGI 174 (270)
T ss_dssp GSCHHHHHH-HHHHHHHHHHHTTC
T ss_pred cCCHHHHHH-HHHHHHHHHHHcCc
Confidence 998665443 44577777776654
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.91 E-value=1.5e-08 Score=99.12 Aligned_cols=118 Identities=13% Similarity=0.127 Sum_probs=75.1
Q ss_pred ceeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCC-------CCC----hHHHHHHHHHHHH----
Q 011581 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA-------DGP----MPQTKEHILLAKQ---- 198 (482)
Q Consensus 134 ~Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~-------~g~----~~~t~e~l~~~~~---- 198 (482)
.|+......++.++..+.+|||+|+++|...+...++.++++|+|+|.+ +.. ....+..+..+..
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3444445566778889999999999999999999999999999999765 211 1233334433332
Q ss_pred cCCCcEEEEEecCCCCChH-----------------HHHHHHHHHHHHHHhhcC-CCCCCccEEEcchhhhH
Q 011581 199 VGVPNMVVFLNKQDQVDDE-----------------ELLQLVELEVRELLSSYE-FPGDDVPIISGSALLAL 252 (482)
Q Consensus 199 ~~ip~iivviNK~D~~~~~-----------------~~~~~i~~~i~~~l~~~~-~~~~~~~~i~~Sa~~g~ 252 (482)
.++| ++++.||+|+.... .-.+...+-+...+.... -....+.++.+||+++.
T Consensus 233 ~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~ 303 (327)
T 3ohm_A 233 QNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE 303 (327)
T ss_dssp TTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH
T ss_pred CCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH
Confidence 2566 89999999975311 011111112222222222 12235678899999998
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.78 E-value=6.4e-10 Score=111.36 Aligned_cols=120 Identities=8% Similarity=0.127 Sum_probs=70.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
..+|+++|.+|+|||||+|+|++....... +........|+|.+.....+.. .+.++||||..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~---------~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETE---------NVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQM 227 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCS---------SCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSG
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccc---------cceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHH
Confidence 468999999999999999999976421100 1111233456676555444322 2899999995321
Q ss_pred ----HHHHHhh---cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChH
Q 011581 162 ----VKNMITG---AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE 217 (482)
Q Consensus 162 ----~~~~~~~---~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~ 217 (482)
....+.. ....+.+++++|+...........+..+...+.| +++++||+|.....
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~-~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRA-FTCHFSNRLTIHRT 289 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEEE
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCce-EEEEecCccccccc
Confidence 1222222 3567899999998542211111112333445677 89999999998743
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=3.5e-10 Score=113.37 Aligned_cols=118 Identities=12% Similarity=0.132 Sum_probs=73.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--- 161 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--- 161 (482)
..+|+++|.+|+|||||+|+|++...... .........|+|.+.....+. ..+.++||||..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~----------~~~~~~~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKG----------NVITTSYFPGTTLDMIEIPLE---SGATLYDTPGIINHHQM 228 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTT----------CCCEEEECTTSSCEEEEEECS---TTCEEEECCSCCCCSSG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCc----------cceeecCCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHH
Confidence 46899999999999999999997632211 111223345677765554433 23899999995321
Q ss_pred ----HHHHHhhc---ccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh
Q 011581 162 ----VKNMITGA---AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 162 ----~~~~~~~~---~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
....+..+ ...|.+++++++.........+.+..+...+.| +++++||+|....
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~-~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRS-FVCYMANELTVHR 289 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEE-EEEEECTTSCEEE
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCce-EEEEecCCccccc
Confidence 11112222 568999999998542211111113334445677 8999999998763
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.74 E-value=1.4e-07 Score=95.15 Aligned_cols=165 Identities=16% Similarity=0.118 Sum_probs=93.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh-cCCCCCcccccccCChhhhcCCceeeeeeeEeecC-CeEEEEEeCCCchh-
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS-LGNSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHAD- 160 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~-~~~i~liDtPG~~~- 160 (482)
....++++|+.|+|||||+|.|++.... .|.... +..+..+ .+ ..+... ...++++|+||...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~------~g~~~t~-~~-------~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT------GVVEVTM-ER-------HPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC------CC----C-CC-------EEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE------CCeecce-eE-------EeccccccCCeeehHhhcccch
Confidence 4458999999999999999999874221 111110 1111000 11 112222 23589999999532
Q ss_pred --hHHHHHh--hcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHH--------HHHHHHHHHH
Q 011581 161 --YVKNMIT--GAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEE--------LLQLVELEVR 228 (482)
Q Consensus 161 --~~~~~~~--~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~--------~~~~i~~~i~ 228 (482)
-....+. ++...|..++ ++... .+.|....++.+...+.| +++|+||.|+.--+| ..+.+.+.++
T Consensus 134 ~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p-~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 134 NFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKE-FYFVRTKVDSDITNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp SCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCC-eEEEEecCcccccCcccccCCHHHHHHHHHHHH
Confidence 1222222 2334455554 67654 466777777777777888 889999999751000 0111222333
Q ss_pred HHH----hhcCCCCCCccEEEcch--hhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCCC
Q 011581 229 ELL----SSYEFPGDDVPIISGSA--LLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPI 285 (482)
Q Consensus 229 ~~l----~~~~~~~~~~~~i~~Sa--~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~~ 285 (482)
++. .+.+.+ ...++++|+ ..+. |+++|.+.+...+|.
T Consensus 211 ~l~~~~l~~~g~~--~~~iiliSsh~l~~~------------------~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 211 LNCVNTFRENGIA--EPPIFLLSNKNVCHY------------------DFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHTTCS--SCCEEECCTTCTTST------------------THHHHHHHHHHHSCG
T ss_pred HHHHHHHHhcCCC--CCcEEEEecCcCCcc------------------CHHHHHHHHHHhCcc
Confidence 332 233321 246789999 4443 678888888887753
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=102.52 Aligned_cols=85 Identities=20% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecC----------------
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE---------------- 146 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~---------------- 146 (482)
....+|+++|.+|+|||||+|+|++.....+ ...+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~----------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~ 83 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAE----------------NFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc----------------CCCccccCceeEEEEECCccceeeccccCcccc
Confidence 4457899999999999999999986522111 12233443333222222
Q ss_pred -CeEEEEEeCCCchhhHH-------HHHhhcccCCeEEEeecCCC
Q 011581 147 -NRHYAHVDCPGHADYVK-------NMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 147 -~~~i~liDtPG~~~~~~-------~~~~~~~~~D~~ilVvda~~ 183 (482)
...+.||||||+.++.. .....++.+|++++|+|+.+
T Consensus 84 ~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23589999999877644 45677789999999999974
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.64 E-value=3.4e-08 Score=100.63 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=71.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCC------cccccccCChhh-hcCCceeeee--------ee----Eeec
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAP------KKYDEIDAAPEE-RARGITINTA--------TV----EYET 145 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~------~~~~~~d~~~~e-~~~g~Ti~~~--------~~----~~~~ 145 (482)
...|+++|.+|+||||+++.|.......|.... ......+....- ...|+.+... .. .-..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999887654443211 000011111110 1112211110 00 0012
Q ss_pred CCeEEEEEeCCCchhh----HHHHHh--hcccCCeEEEeecCCCCChHHHHHHHHHHHHcCC-CcEEEEEecCCCCC
Q 011581 146 ENRHYAHVDCPGHADY----VKNMIT--GAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV-PNMVVFLNKQDQVD 215 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~----~~~~~~--~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~i-p~iivviNK~D~~~ 215 (482)
.++.+.||||||.... ...+.. .+..+|.+++|+|+..|.. ....+.... .++ +...+|+||+|...
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~-~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ--AGIQAKAFK-EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHH-TTSCSCEEEEEECSSSCS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH--HHHHHHHHh-hcccCCeEEEEeCCCCcc
Confidence 5678999999996442 332222 2236899999999987642 222222222 235 54678999999865
No 215
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=7.5e-08 Score=93.65 Aligned_cols=93 Identities=25% Similarity=0.225 Sum_probs=66.8
Q ss_pred EEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCC-h-HHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHH
Q 011581 149 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-M-PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELE 226 (482)
Q Consensus 149 ~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-~-~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~ 226 (482)
.+.+||| +++|......+++.+|++|+|+|+++.. . ......+..+...++| +++|+||+|+.+..+. + +
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL~~~~~v-~----~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDLYDEDDL-R----K 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHH-H----H
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHcCCchhH-H----H
Confidence 7899999 8888776777889999999999999764 2 2333344455556888 8899999999875332 1 3
Q ss_pred HHHHHhhcCCCCCCccEEEcchhhhH
Q 011581 227 VRELLSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 227 i~~~l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
..++++.+.. . .+++++||++|.
T Consensus 136 ~~~~~~~~~~--~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 136 VRELEEIYSG--L-YPIVKTSAKTGM 158 (301)
T ss_dssp HHHHHHHHTT--T-SCEEECCTTTCT
T ss_pred HHHHHHHHhh--h-CcEEEEECCCCc
Confidence 3344443331 1 689999999998
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.51 E-value=9.1e-07 Score=89.75 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=73.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---------hhhcCCceeeeeee-------------
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---------EERARGITINTATV------------- 141 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~~------------- 141 (482)
+...|+++|..|+||||++..|.......|....-. ..|... .....|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv--~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV--CSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 356789999999999999999998766655432110 011110 01122332221100
Q ss_pred EeecCCeEEEEEeCCCchh----hHHHHH--hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 142 EYETENRHYAHVDCPGHAD----YVKNMI--TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 142 ~~~~~~~~i~liDtPG~~~----~~~~~~--~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+...++.+.||||||... ...++. ..+..+|.++||+|+..|... ......... .++...+|+||+|...
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 1112457899999999422 222221 223468999999999876332 222333332 3333568899999876
Q ss_pred h
Q 011581 216 D 216 (482)
Q Consensus 216 ~ 216 (482)
.
T Consensus 254 ~ 254 (443)
T 3dm5_A 254 K 254 (443)
T ss_dssp S
T ss_pred c
Confidence 3
No 217
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.47 E-value=8e-07 Score=89.27 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=58.0
Q ss_pred eeeeeeeEeecCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCC----------CC-hHHHHHHHHHHHH----c
Q 011581 135 TINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD----------GP-MPQTKEHILLAKQ----V 199 (482)
Q Consensus 135 Ti~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~----------g~-~~~t~e~l~~~~~----~ 199 (482)
|+......+..++..+.||||+|+++|...+...++.++++|+|+|.++ .- .......+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 3333334566678889999999999999999999999999999999987 21 1233334433332 2
Q ss_pred CCCcEEEEEecCCCC
Q 011581 200 GVPNMVVFLNKQDQV 214 (482)
Q Consensus 200 ~ip~iivviNK~D~~ 214 (482)
++| +|+|.||+|+.
T Consensus 284 ~~p-iiLvgNK~DL~ 297 (402)
T 1azs_C 284 TIS-VILFLNKQDLL 297 (402)
T ss_dssp SCC-EEEEEECHHHH
T ss_pred CCe-EEEEEEChhhh
Confidence 567 89999999984
No 218
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=2.7e-07 Score=92.53 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHH-hcCCCCCcccccccCChhhhcCCceeeeeeeEeecCC--------------
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALA-SLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN-------------- 147 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~-------------- 147 (482)
....+|+++|++|+|||||+|+|++... ..+ ...++|++.....+...+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~----------------~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~ 81 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA----------------NYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT----------------CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccc----------------CCCceeecceeeeeeeCCcchhhhhhhccccc
Confidence 4457899999999999999999997522 111 122334443333333332
Q ss_pred ---eEEEEEeCCCchh-------hHHHHHhhcccCCeEEEeecCCC
Q 011581 148 ---RHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGAD 183 (482)
Q Consensus 148 ---~~i~liDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~ 183 (482)
..+.++|+||... +.......++.+|.+++|+|+.+
T Consensus 82 ~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4578999999432 33456667788999999999875
No 219
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.42 E-value=5.9e-07 Score=89.05 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=49.5
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCC----------CC-ChHHHHHHHHHHHH----cCCCcEEEEEecC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA----------DG-PMPQTKEHILLAKQ----VGVPNMVVFLNKQ 211 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~----------~g-~~~~t~e~l~~~~~----~~ip~iivviNK~ 211 (482)
...+.+|||+|+++|...+...++.+|++|+|+|.+ +. -.......+..+.. .++| +|+|.||+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiLvgNK~ 260 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS-FMLFLNKF 260 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE-EEEEEECH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe-EEEEEECc
Confidence 467899999999999999999999999999999986 11 12333334433332 3566 89999999
Q ss_pred CCC
Q 011581 212 DQV 214 (482)
Q Consensus 212 D~~ 214 (482)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 974
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.32 E-value=9.5e-07 Score=85.52 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=73.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCC---hh------hhcCCceeeeee-------------eE
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAA---PE------ERARGITINTAT-------------VE 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~------e~~~g~Ti~~~~-------------~~ 142 (482)
...|+++|..|+||||++..|.......|....-. ..|.. .. ....|+.+-... ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~--~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV--GADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE--ECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--ecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 45788999999999999999987766544321110 01100 00 011233221110 01
Q ss_pred eecCCeEEEEEeCCCchh--hHHHHH------hhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 143 YETENRHYAHVDCPGHAD--YVKNMI------TGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~--~~~~~~------~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+...++.+.||||||... ....+. ..+..+|.+++|+|+..+ ....+.+..... .++...+++||+|..
T Consensus 176 ~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 122577899999999655 322221 234578999999999864 233333333332 455466789999976
Q ss_pred C
Q 011581 215 D 215 (482)
Q Consensus 215 ~ 215 (482)
.
T Consensus 253 ~ 253 (297)
T 1j8m_F 253 A 253 (297)
T ss_dssp T
T ss_pred c
Confidence 4
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.30 E-value=8.8e-07 Score=85.15 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=57.4
Q ss_pred EEeCCCch-hhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Q 011581 152 HVDCPGHA-DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVREL 230 (482)
Q Consensus 152 liDtPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~ 230 (482)
+-+.|||. +..+++...+..+|+++.|+||.++......+.-+++ .+.| .++|+||+|+.+.+. .+ ...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~-~~----~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKP-RIMLLNKADKADAAV-TQ----QWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSC-EEEEEECGGGSCHHH-HH----HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCC-EEEEEECcccCCHHH-HH----HHHHH
Confidence 44679997 6778889999999999999999987664422222222 3566 789999999997432 11 33344
Q ss_pred HhhcCCCCCCccEEEcchhhhH
Q 011581 231 LSSYEFPGDDVPIISGSALLAL 252 (482)
Q Consensus 231 l~~~~~~~~~~~~i~~Sa~~g~ 252 (482)
++..+ ++++++||.++.
T Consensus 75 ~~~~g-----~~~i~iSA~~~~ 91 (282)
T 1puj_A 75 FENQG-----IRSLSINSVNGQ 91 (282)
T ss_dssp HHTTT-----CCEEECCTTTCT
T ss_pred HHhcC-----CcEEEEECCCcc
Confidence 44333 578999999887
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.29 E-value=1.5e-06 Score=88.12 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=72.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---------hhhcCCceeeeee-------------eE
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---------EERARGITINTAT-------------VE 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~Ti~~~~-------------~~ 142 (482)
...|+++|+.|+||||++..|.......|....-.. .|... .....|+...... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~--~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA--ADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE--ECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--cCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 567899999999999999999987666554221100 01110 0011233221110 01
Q ss_pred eecCCeEEEEEeCCCchh------hHHHHHh--hcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCC
Q 011581 143 YETENRHYAHVDCPGHAD------YVKNMIT--GAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~------~~~~~~~--~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~ 213 (482)
+...++.+.||||||... +..++.. ....+|.++||+|+..|... ...+.... ..++ ..|++||+|.
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~--~gVIlTKlD~ 250 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPI--GSVIITKMDG 250 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSS--EEEEEECGGG
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCC--cEEEEecccc
Confidence 122467899999999543 3333322 22357999999999876332 22223333 3333 4678999998
Q ss_pred CC
Q 011581 214 VD 215 (482)
Q Consensus 214 ~~ 215 (482)
..
T Consensus 251 ~a 252 (433)
T 3kl4_A 251 TA 252 (433)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 223
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=98.25 E-value=1.6e-06 Score=67.95 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=71.2
Q ss_pred eEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccc-eeEEEEEeecccccceeecCCeEEEEEccccccCcccC
Q 011581 295 LLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETR-NFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRG 373 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~-~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 373 (482)
.+.|.++|+++..|+++..+|.+|.++.+..+++...+... ..++.|+.++..++.++.+|.-|++.|.+ ..|++.|
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~--~~dik~G 85 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKN--FNDIKEG 85 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTT--CSSCSSC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcC--cCCCCCC
Confidence 35678899999999999999999999999999999876422 55899999999999999999999999985 4689999
Q ss_pred eEEe
Q 011581 374 MVLA 377 (482)
Q Consensus 374 ~vl~ 377 (482)
|+|-
T Consensus 86 D~Ie 89 (99)
T 1d1n_A 86 DVIE 89 (99)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9984
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.24 E-value=2.5e-06 Score=86.85 Aligned_cols=126 Identities=18% Similarity=0.129 Sum_probs=72.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhc-CCCCCcccccccC---Ch------hhhcCCceeeeee-------------
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDA---AP------EERARGITINTAT------------- 140 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~---~~------~e~~~g~Ti~~~~------------- 140 (482)
+...|+++|+.|+||||++..|....... |....-. ..|. .. .....|+.+-...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv--d~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV--SADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE--ECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE--ecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 45688999999999999999999877766 5422110 0010 00 0112233221110
Q ss_pred eEeecCCeEEEEEeCCCchhhHHHHH------hhcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCC
Q 011581 141 VEYETENRHYAHVDCPGHADYVKNMI------TGAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 141 ~~~~~~~~~i~liDtPG~~~~~~~~~------~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~ 213 (482)
..+...++.++||||||...+..... ..+..+|.+++|+|+..+.. ....+.... ..++. -+++||+|.
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f~~~l~i~--gvVlnK~D~ 252 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAFNEALPLT--GVVLTKVDG 252 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHHHHHSCCC--CEEEECTTS
T ss_pred HHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHHhccCCCe--EEEEecCCC
Confidence 01122577899999999654322222 22347899999999987632 222222222 23443 357999997
Q ss_pred CC
Q 011581 214 VD 215 (482)
Q Consensus 214 ~~ 215 (482)
..
T Consensus 253 ~~ 254 (433)
T 2xxa_A 253 DA 254 (433)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.21 E-value=5.5e-07 Score=94.74 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=59.3
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEe---ecCCeEEEEEeCCCc
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY---ETENRHYAHVDCPGH 158 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~---~~~~~~i~liDtPG~ 158 (482)
..+..+|+|+|.+|+|||||+|+|++..... .. .. ..++.|.....+.. ...+..+.|+||||.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-----~~----~~----tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-----SL----GS----TVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-----CC----CC----SSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-----cc----CC----CCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 4567889999999999999999998642100 00 00 01122221111111 235678999999996
Q ss_pred hhhHH------HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHH
Q 011581 159 ADYVK------NMITGAAQMDGAILVVSGADGPMPQTKEHILLAK 197 (482)
Q Consensus 159 ~~~~~------~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~ 197 (482)
.+..+ ..+..+...-..++|+|+..++..+..+.+.++.
T Consensus 102 ~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 102 GDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp CCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred CcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 43211 1111112111226788888888888877766543
No 226
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.17 E-value=7e-06 Score=66.61 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=71.1
Q ss_pred eEEEEeEEeeCCCce---EEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeecccccceeecCCeEEEEEcccccc-C
Q 011581 295 LLAVEDVFSITGRGT---VATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKA-D 369 (482)
Q Consensus 295 ~~~I~~v~~v~g~G~---v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~~~-~ 369 (482)
.+.|.++|+++..|+ |+..+|..|.|+.+..+++...+.. +..++.|+.++..++.++.+|.-|++.|.+ .. |
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~--fniD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDE--EKVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSC--TTSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEcc--CCCC
Confidence 567889999998888 9999999999999999999987632 245789999999999999999999999984 46 8
Q ss_pred cccCeEEeC
Q 011581 370 IQRGMVLAK 378 (482)
Q Consensus 370 i~~G~vl~~ 378 (482)
++.||+|-.
T Consensus 90 ik~GDiIE~ 98 (120)
T 2crv_A 90 FKPGDQVIC 98 (120)
T ss_dssp CCTTEEEEE
T ss_pred CCCCCEEEE
Confidence 999999953
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.16 E-value=6.3e-06 Score=80.00 Aligned_cols=87 Identities=15% Similarity=0.069 Sum_probs=57.9
Q ss_pred chhhHHHHHhhcccCCeEEEeecCCCCC-hHH-HHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcC
Q 011581 158 HADYVKNMITGAAQMDGAILVVSGADGP-MPQ-TKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYE 235 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~D~~ilVvda~~g~-~~~-t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 235 (482)
+++|.......++.+|.+++|+|+++.. ... ..+.+..+...++| +++|+||+|+.+..+. +.. ++..++.+..+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~~v-~~~-~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEEEK-KEL-ERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHHHH-HHH-HHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCcccc-HHH-HHHHHHHHHCC
Confidence 3444333335678999999999999764 333 23455556667888 7899999999875421 111 24445555544
Q ss_pred CCCCCccEEEcchhhhH
Q 011581 236 FPGDDVPIISGSALLAL 252 (482)
Q Consensus 236 ~~~~~~~~i~~Sa~~g~ 252 (482)
++++++||++|.
T Consensus 143 -----~~~~~~SA~~g~ 154 (302)
T 2yv5_A 143 -----YDVLKVSAKTGE 154 (302)
T ss_dssp -----CEEEECCTTTCT
T ss_pred -----CeEEEEECCCCC
Confidence 579999999987
No 228
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.13 E-value=1.9e-06 Score=86.07 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=67.3
Q ss_pred EEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Q 011581 150 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229 (482)
Q Consensus 150 i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~ 229 (482)
+.-+|+| +++|..........+|++++|+|+.+.......+..+.+ .+.| +++|+||+|+.+.+...+.+.+.+.+
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNP-ILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSC-EEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCC-EEEEEEChhcCCCccCHHHHHHHHHH
Confidence 4445554 778887777777889999999999985532222221111 2566 88999999998643212223334455
Q ss_pred HHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 230 LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 230 ~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
+++..++. ..+++++||++|. |+.+|++.+.+.
T Consensus 127 ~~~~~g~~--~~~v~~iSA~~g~------------------gi~~L~~~I~~~ 159 (369)
T 3ec1_A 127 MAEELGLC--PVDVCLVSAAKGI------------------GMAKVMEAINRY 159 (369)
T ss_dssp HHHTTTCC--CSEEEECBTTTTB------------------THHHHHHHHHHH
T ss_pred HHHHcCCC--cccEEEEECCCCC------------------CHHHHHHHHHhh
Confidence 56666652 2478999999998 777777777654
No 229
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.11 E-value=2.2e-06 Score=82.38 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=35.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCc
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~ 158 (482)
...++|+++|.+|+|||||+|+|++.. ........|+|.+.....+ +..+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~---------------~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN---------------IAKTGDRPGITTSQQWVKV---GKELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC---------------CC------------CCEEE---TTTEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc---------------eeecCCCCCeeeeeEEEEe---CCCEEEEECcCc
Confidence 456899999999999999999998541 1122234456665543332 346899999995
No 230
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.09 E-value=3.2e-05 Score=70.01 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=75.9
Q ss_pred EEEEE-ecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh--------hhcCCceeeeee-eE----e--ecCCeEE
Q 011581 87 NIGTI-GHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE--------ERARGITINTAT-VE----Y--ETENRHY 150 (482)
Q Consensus 87 ~I~i~-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~--------e~~~g~Ti~~~~-~~----~--~~~~~~i 150 (482)
.|+|. +..|+||||+.-.|.......|.... .+|..+. ....+..+-... .. + -.+.+.+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vl----liD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ 78 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIA----VVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDF 78 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEE----EEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEE----EEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCE
Confidence 46676 56789999999999887776654211 1111110 011111110000 00 0 0135789
Q ss_pred EEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcC-----CCcEEEEEecCCCCC
Q 011581 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG-----VPNMVVFLNKQDQVD 215 (482)
Q Consensus 151 ~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~-----ip~iivviNK~D~~~ 215 (482)
+|||||+... ..+...+..+|.+|+++..+... ..+...+..+...+ ++ +.+|+|++|...
T Consensus 79 viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~~~ 144 (206)
T 4dzz_A 79 AIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIEMA 144 (206)
T ss_dssp EEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCTTE
T ss_pred EEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCCCc
Confidence 9999998653 34455667799999999998877 77888888887654 45 578999999643
No 231
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.04 E-value=3.5e-06 Score=84.11 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=65.5
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH--cCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhc
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~ 234 (482)
-.++|.+......+.+|++++|+|+.+... .....+.. .+.| +++|+||+|+.+.+...+.+.+.+..+++..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~----~~~~~l~~~~~~~p-~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNG----SWLPGLHRFVGNNK-VLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHH----HCCTTHHHHSSSSC-EEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcc----cHHHHHHHHhCCCc-EEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 357787777777778899999999987321 11111111 2567 8899999999764321222333445556666
Q ss_pred CCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 235 EFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 235 ~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
++. ..+++.+||++|. |+.+|++.|.+.
T Consensus 130 g~~--~~~v~~iSA~~g~------------------gi~~L~~~l~~~ 157 (368)
T 3h2y_A 130 GLK--PEDVFLISAAKGQ------------------GIAELADAIEYY 157 (368)
T ss_dssp TCC--CSEEEECCTTTCT------------------THHHHHHHHHHH
T ss_pred CCC--cccEEEEeCCCCc------------------CHHHHHhhhhhh
Confidence 652 2478999999998 777777777654
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.01 E-value=1.3e-05 Score=82.20 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=67.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh---------hhcCCceeeeeeeE-------------e
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE---------ERARGITINTATVE-------------Y 143 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---------e~~~g~Ti~~~~~~-------------~ 143 (482)
..|+++|..|+|||||++.|.+.....+...... ..|.... ...+++.+-..... .
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~--g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA--AGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--CCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe--cCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 4689999999999999999988755433211110 0111110 01223322111100 0
Q ss_pred ecCCeEEEEEeCCCchh----hHHH---HHhhc-----ccCCeEEEeecCCCCChHHHHHHHHHH-HHcCCCcEEEEEec
Q 011581 144 ETENRHYAHVDCPGHAD----YVKN---MITGA-----AQMDGAILVVSGADGPMPQTKEHILLA-KQVGVPNMVVFLNK 210 (482)
Q Consensus 144 ~~~~~~i~liDtPG~~~----~~~~---~~~~~-----~~~D~~ilVvda~~g~~~~t~e~l~~~-~~~~ip~iivviNK 210 (482)
...+..+.||||+|... +... ....+ ...+-++||+|+..|... ...++.+ ..+++. .+++||
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~it--gvIlTK 447 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVGLT--GITLTK 447 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTCCS--EEEEEC
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcCCC--EEEEEc
Confidence 12456789999999532 2211 11111 136778999999877322 2223333 345776 467899
Q ss_pred CCCCC
Q 011581 211 QDQVD 215 (482)
Q Consensus 211 ~D~~~ 215 (482)
+|-..
T Consensus 448 LD~ta 452 (503)
T 2yhs_A 448 LDGTA 452 (503)
T ss_dssp GGGCS
T ss_pred CCCcc
Confidence 99643
No 233
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.97 E-value=8.3e-06 Score=73.66 Aligned_cols=103 Identities=10% Similarity=0.064 Sum_probs=63.8
Q ss_pred CchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHH----HHHH----cCCCcEEEEEecC-CCCChHHHHHHHHHHH
Q 011581 157 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL----LAKQ----VGVPNMVVFLNKQ-DQVDDEELLQLVELEV 227 (482)
Q Consensus 157 G~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~----~~~~----~~ip~iivviNK~-D~~~~~~~~~~i~~~i 227 (482)
|+..+...+..++..+|++|+|||+++......++.+. ++.. .++| ++|+.||. |+...-.. .++
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Ams~-----~EI 184 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPC-----FYL 184 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBCCH-----HHH
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCCCH-----HHH
Confidence 78888888888899999999999999853323444332 2211 3678 88888995 67542111 122
Q ss_pred HHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 228 RELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 228 ~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
.+.|.-..+. ....+.++||++|+ |+.+-+++|.+.+.
T Consensus 185 ~e~L~L~~l~-R~W~Iq~csA~TGe------------------GL~EGLdWL~~~l~ 222 (227)
T 3l82_B 185 AHELHLNLLN-HPWLVQDTEAETLT------------------GFLNGIEWILEEVE 222 (227)
T ss_dssp HHHTTGGGGC-SCEEEEEEETTTCT------------------THHHHHHHHTTTTT
T ss_pred HHHcCCcCCC-CCEEEEEeECCCCc------------------CHHHHHHHHHHHHH
Confidence 2222221122 46778999999998 99999999987653
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.94 E-value=3.3e-06 Score=80.15 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=61.2
Q ss_pred CCCchhh-HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhh
Q 011581 155 CPGHADY-VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233 (482)
Q Consensus 155 tPG~~~~-~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~ 233 (482)
-|||... .+++...+..+|+++.|+||.++......+ +.++ +.| .++|+||+|+.+.+.. + +..++++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l~ll---~k~-~iivlNK~DL~~~~~~-~----~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-VDFS---RKE-TIILLNKVDIADEKTT-K----KWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-SCCT---TSE-EEEEEECGGGSCHHHH-H----HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-HHhc---CCC-cEEEEECccCCCHHHH-H----HHHHHHHH
Confidence 3898654 467788889999999999999866543211 1112 777 7889999999985322 1 33344444
Q ss_pred cCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhc
Q 011581 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSY 282 (482)
Q Consensus 234 ~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~ 282 (482)
.+ .++ ++||.++. |+.+|++.+...
T Consensus 74 ~g-----~~v-~iSa~~~~------------------gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QG-----KRV-ITTHKGEP------------------RKVLLKKLSFDR 98 (262)
T ss_dssp TT-----CCE-EECCTTSC------------------HHHHHHHHCCCT
T ss_pred cC-----CeE-EEECCCCc------------------CHHHHHHHHHHh
Confidence 34 456 89999887 788888877553
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=1.9e-05 Score=77.32 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=70.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCccccccc-CChhh------hcCCceeeeeeeEe-------------
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEID-AAPEE------RARGITINTATVEY------------- 143 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d-~~~~e------~~~g~Ti~~~~~~~------------- 143 (482)
+...++++|+.|+|||||++.|.+.....+....-...... ....+ +..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 34578999999999999999999876554432111110010 01111 22333221111000
Q ss_pred ecCCeEEEEEeCCCchh----hHHHHHh--hcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCCC
Q 011581 144 ETENRHYAHVDCPGHAD----YVKNMIT--GAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 144 ~~~~~~i~liDtPG~~~----~~~~~~~--~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~~ 215 (482)
...+..+.++||+|... +...+.. ..-.+|-.++++|+..+. +..+.+..+. ..++. ++++||+|...
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it--~iilTKlD~~a 282 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKID--GIILTKLDADA 282 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCC--EEEEECGGGCS
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCC--EEEEeCcCCcc
Confidence 01245678899999532 2222211 122579999999988763 3333343333 45665 56789999743
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.87 E-value=2.9e-05 Score=75.85 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh-------hh-----cCCceee-eee-------e---
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE-------ER-----ARGITIN-TAT-------V--- 141 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~-------e~-----~~g~Ti~-~~~-------~--- 141 (482)
...|+++|..|+||||++..|.+.....|....-. ..|.... .. ..++.+- ... .
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli--d~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA--AADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--ECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--eCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 45689999999999999999988766544321110 0111100 00 1222221 000 0
Q ss_pred Ee---ecCCeEEEEEeCCCchhhHHHHHhh------------cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEE
Q 011581 142 EY---ETENRHYAHVDCPGHADYVKNMITG------------AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVV 206 (482)
Q Consensus 142 ~~---~~~~~~i~liDtPG~~~~~~~~~~~------------~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iiv 206 (482)
.+ ...++.++||||||........+.. ...+|.+++|+|+..+ ..+.+.+..... ..+..=+
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~~~-~~~i~Gv 259 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEFSK-VADVSGI 259 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHTT-TSCCCEE
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHHhh-cCCCcEE
Confidence 00 1256889999999965432222111 1247999999999865 222222222211 2332346
Q ss_pred EEecCCCCC
Q 011581 207 FLNKQDQVD 215 (482)
Q Consensus 207 viNK~D~~~ 215 (482)
++||+|...
T Consensus 260 Vltk~d~~~ 268 (320)
T 1zu4_A 260 ILTKMDSTS 268 (320)
T ss_dssp EEECGGGCS
T ss_pred EEeCCCCCC
Confidence 889999754
No 237
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.85 E-value=6e-05 Score=77.88 Aligned_cols=107 Identities=19% Similarity=0.296 Sum_probs=83.2
Q ss_pred hhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCCCceEEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEeeccc
Q 011581 269 VDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQK 347 (482)
Q Consensus 269 ~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~~~~ 347 (482)
|+-++++.+++...++ |.....---.+.|.++|+++..|.|+..+|..|.++.|..+++...+.. +..++.||+++++
T Consensus 385 y~l~~~~~~~~~~~~~-~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~ 463 (501)
T 1zo1_I 385 YNLIDEVKAAMSGMLS-PELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKD 463 (501)
T ss_dssp SHHHHHTHHHHTTTSS-TTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTE
T ss_pred HHHHHHHHHHHHhhcC-ceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCc
Confidence 4445555556655554 3333333345667789998888999999999999999999999876532 3568999999999
Q ss_pred ccceeecCCeEEEEEccccccCcccCeEEeC
Q 011581 348 TLDEAMAGDNVGLLLRGVQKADIQRGMVLAK 378 (482)
Q Consensus 348 ~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~ 378 (482)
+++++..|+-|++.+.+. .+++.||+|-.
T Consensus 464 ~v~e~~~g~ecgi~~~~~--~~~~~gd~~~~ 492 (501)
T 1zo1_I 464 DVNEVRNGMECGIGVKNY--NDVRTGDVIEV 492 (501)
T ss_dssp EESEEETTCCEEEEBCCC--TTCCTTCEEEE
T ss_pred cccEECCCCEEEEEEcCc--CCCCCCCEEEE
Confidence 999999999999999854 58999999853
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.80 E-value=9.6e-06 Score=76.98 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 160 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~ 160 (482)
.+++++|.+|+|||||+|+|++... .......|+|........ +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~---------------~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA---------------SSVGAQPGITKGIQWFSL---ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCEEEC---TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc---------------cccCCCCCCccceEEEEe---CCCEEEEECCCccc
Confidence 6999999999999999999985421 011122355554432222 34689999999654
No 239
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.72 E-value=5e-05 Score=80.82 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCchh------------hHHHHHhh-ccc-CCeEEEeecCCCCChHH-HHHHHHHHHHcCCCcEEEEEecC
Q 011581 147 NRHYAHVDCPGHAD------------YVKNMITG-AAQ-MDGAILVVSGADGPMPQ-TKEHILLAKQVGVPNMVVFLNKQ 211 (482)
Q Consensus 147 ~~~i~liDtPG~~~------------~~~~~~~~-~~~-~D~~ilVvda~~g~~~~-t~e~l~~~~~~~ip~iivviNK~ 211 (482)
...++|+|.||... -...++.. +.. ...++++++++.....+ ..+.++.+...|.+ .|+|+||.
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~r-tI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDR-TIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCS-EEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCc-eEEEecch
Confidence 35689999998432 23333333 333 35677777766554422 23333334344666 78899999
Q ss_pred CCCCh
Q 011581 212 DQVDD 216 (482)
Q Consensus 212 D~~~~ 216 (482)
|+++.
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 99863
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.72 E-value=5.7e-05 Score=73.17 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=67.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh---h------hhcCCceeeeee-------------eE
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP---E------ERARGITINTAT-------------VE 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~------e~~~g~Ti~~~~-------------~~ 142 (482)
...|+++|..|+||||++..|.+.....|....-. ..|... . -...|+.+-... ..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv--~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA--AADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--EECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE--ccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34689999999999999999988765544321100 001110 0 011222221100 00
Q ss_pred eecCCeEEEEEeCCCchhhHHH-------HHhhc-----ccCCeEEEeecCCCCChHHHHHHHHH-HHHcCCCcEEEEEe
Q 011581 143 YETENRHYAHVDCPGHADYVKN-------MITGA-----AQMDGAILVVSGADGPMPQTKEHILL-AKQVGVPNMVVFLN 209 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~~~~-------~~~~~-----~~~D~~ilVvda~~g~~~~t~e~l~~-~~~~~ip~iivviN 209 (482)
....+..+.|+||||....... ....+ ..+|.+++|+|+..+. ...+.... ....++. -+++|
T Consensus 182 a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~~~~i~--gvVlT 257 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAVNVT--GIILT 257 (306)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHSCCC--EEEEE
T ss_pred HHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHhcCCCC--EEEEe
Confidence 0124677999999995322221 11121 2478899999997431 12222222 2235555 46789
Q ss_pred cCCCCC
Q 011581 210 KQDQVD 215 (482)
Q Consensus 210 K~D~~~ 215 (482)
|+|...
T Consensus 258 k~D~~~ 263 (306)
T 1vma_A 258 KLDGTA 263 (306)
T ss_dssp CGGGCS
T ss_pred CCCCcc
Confidence 999754
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.71 E-value=0.00011 Score=71.27 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=66.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCCh-hh------hcCCceeeeeeeE----------e---e
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAP-EE------RARGITINTATVE----------Y---E 144 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~-~e------~~~g~Ti~~~~~~----------~---~ 144 (482)
.-.|+++|+.|+|||||++.|.+.....+....-......... .+ +..++.+-..... + .
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998765543321110000000000 00 1122221110000 0 1
Q ss_pred cCCeEEEEEeCCCchhh----HHHH---Hh----h-cccCCeEEEeecCCCCChHHHHHHHHHH-HHcCCCcEEEEEecC
Q 011581 145 TENRHYAHVDCPGHADY----VKNM---IT----G-AAQMDGAILVVSGADGPMPQTKEHILLA-KQVGVPNMVVFLNKQ 211 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~----~~~~---~~----~-~~~~D~~ilVvda~~g~~~~t~e~l~~~-~~~~ip~iivviNK~ 211 (482)
..+..+.++||+|.... ..+. .. . +..++.+++++|+..+.. ..+.+..+ ...++. ++++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t--~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLT--GVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCS--EEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCc--EEEEECC
Confidence 12445789999995322 1111 11 1 135788899999987753 22233333 345765 5678999
Q ss_pred CCCC
Q 011581 212 DQVD 215 (482)
Q Consensus 212 D~~~ 215 (482)
|...
T Consensus 258 d~~a 261 (304)
T 1rj9_A 258 DGTA 261 (304)
T ss_dssp TSSC
T ss_pred cccc
Confidence 9754
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.64 E-value=6.6e-05 Score=72.67 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=52.7
Q ss_pred hcccCCeEEEeecCCCCChHHH--HHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 168 GAAQMDGAILVVSGADGPMPQT--KEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 168 ~~~~~D~~ilVvda~~g~~~~t--~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
.+..+|.+++|+|+..+..... .+.+..+...++| .++|+||+|+.++.+..+.+ +++.+.++..+ .++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~~~~~~~-~~~~~~y~~~g-----~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDTI-QAYAEDYRNIG-----YDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHHHH-HHHHHHHHHHT-----CCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchhhhHHHH-HHHHHHHHhCC-----CeEEE
Confidence 4778999999999997655333 3334444567888 67899999998854311112 24445555445 47899
Q ss_pred cchhhhH
Q 011581 246 GSALLAL 252 (482)
Q Consensus 246 ~Sa~~g~ 252 (482)
+||.++.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9999886
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.63 E-value=0.00012 Score=74.08 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=68.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCC---hhh------hcCCceeeeee-------e------E
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAA---PEE------RARGITINTAT-------V------E 142 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~e------~~~g~Ti~~~~-------~------~ 142 (482)
...|+++|..|+||||++..|.+.....|....-. ..|.. ..+ ...|+.+-... . .
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv--d~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~ 175 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV--AADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe--eccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHH
Confidence 45688999999999999999988766544321110 00110 000 11222221110 0 0
Q ss_pred eecCCeEEEEEeCCCchhh----HHHHH--hhcccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCCC
Q 011581 143 YETENRHYAHVDCPGHADY----VKNMI--TGAAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 143 ~~~~~~~i~liDtPG~~~~----~~~~~--~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~~ 215 (482)
+...++.+.||||||.... ...+. ..+..+|.++||+|+..+. .....+.... ..++ .-+++||+|...
T Consensus 176 ~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f~~~l~i--~GVIlTKlD~~~ 251 (425)
T 2ffh_A 176 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAFDEKVGV--TGLVLTKLDGDA 251 (425)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHTCC--CEEEEESGGGCS
T ss_pred HHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHHHhcCCc--eEEEEeCcCCcc
Confidence 1125678999999995332 22221 2223689999999998652 2222222222 2344 356889999754
No 244
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.61 E-value=6.4e-05 Score=71.23 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHH----HHH---HH-cCCCcEEEEEec-CCCCChHHHHHHHHH
Q 011581 155 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI----LLA---KQ-VGVPNMVVFLNK-QDQVDDEELLQLVEL 225 (482)
Q Consensus 155 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l----~~~---~~-~~ip~iivviNK-~D~~~~~~~~~~i~~ 225 (482)
..|+..+...+..++..+|++|+|||+++......++.+ .++ .. .++| ++|+.|| .|+...-.. .
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Ams~-----~ 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRMPC-----F 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBCCH-----H
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCCCH-----H
Confidence 357788888888899999999999999985432233322 222 11 4788 8888897 587652111 1
Q ss_pred HHHHHHhhcCCCCCCccEEEcchhhhHHHhhcCCCcccCcchhhhhHHHHHHHhhhcCC
Q 011581 226 EVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284 (482)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~i~~Sa~~g~~~~~~~~~~~~~~~~w~~gi~~Ll~~l~~~l~ 284 (482)
++.+.|.-..+. ....+.++||.+|+ |+.+-+++|.+.+.
T Consensus 268 EI~e~L~L~~l~-r~W~Iq~csA~tGe------------------GL~EGldWL~~~l~ 307 (312)
T 3l2o_B 268 YLAHELHLNLLN-HPWLVQDTEAETLT------------------GFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHHTTGGGGC-SCEEEEEEETTTCT------------------THHHHHHHHHHHSC
T ss_pred HHHHHcCCccCC-CcEEEEecccCCCc------------------CHHHHHHHHHHHHH
Confidence 222322221122 45778999999998 88888888887653
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.61 E-value=6.7e-05 Score=72.42 Aligned_cols=126 Identities=17% Similarity=0.068 Sum_probs=66.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHh-cCCCCCcccccccCC---hhh------hcCCceeeeee-------eEeecCC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALAS-LGNSAPKKYDEIDAA---PEE------RARGITINTAT-------VEYETEN 147 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~---~~e------~~~g~Ti~~~~-------~~~~~~~ 147 (482)
...|+++|+.|+||||++..|.+.... .|....-. ..|.. ..+ ...|+...... ..-...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv--~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~ 182 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI--TTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE 182 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE--ECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE--ecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcC
Confidence 457999999999999999999887653 45311100 00110 000 11122111000 0001245
Q ss_pred eEEEEEeCCCchhh----HHHHHhhcc--cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 148 RHYAHVDCPGHADY----VKNMITGAA--QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 148 ~~i~liDtPG~~~~----~~~~~~~~~--~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..+.|+||||.... ...+...+. ..|.+++|+|++.+.. ...+.......+++. -+++||+|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~--giVltk~D~~~ 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN--QYIFTKIDETT 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC--EEEEECTTTCS
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC--EEEEeCCCccc
Confidence 68999999995432 222323332 3678899999886532 111212222223333 35679999764
No 246
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.54 E-value=0.00025 Score=73.80 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=85.7
Q ss_pred hhhHHHHHHHhhhcCCCCCCCCCCCeeEEEEeEEeeCC---CceEEEEEEEeeeeecCCEEEEecCCcc-ceeEEEEEee
Q 011581 269 VDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITG---RGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEM 344 (482)
Q Consensus 269 ~~gi~~Ll~~l~~~l~~~~~~~~~~~~~~I~~v~~v~g---~G~v~~G~v~sG~l~~g~~v~i~p~~~~-~~~~V~~i~~ 344 (482)
|+-++++.+++...++ |.....--=++.|.++|.++. .|+|+..+|..|.|+.|..+++...+.. +..++.|+++
T Consensus 424 y~l~~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~ 502 (537)
T 3izy_P 424 YRLIEDLQEELSSRLP-CIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKH 502 (537)
T ss_dssp CCSHHHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhccC-CceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcc
Confidence 4456777777777665 433333345788899999874 6799999999999999999999987642 3568999999
Q ss_pred cccccceeecCCeEEEEEccccccCcccCeEEe
Q 011581 345 FQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 345 ~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
++++++++..|.-|++.+.+ ...+++.||+|-
T Consensus 503 ~k~~v~ev~~g~ecgi~~~~-~~~~~~~gd~ie 534 (537)
T 3izy_P 503 HKDDTSVVKTGMDCGLSLDE-EKIEFKVGDAII 534 (537)
T ss_dssp SSCCCSEEETTCEEEEESSS-SCSSCSCCCEEE
T ss_pred cCcccceEcCCCEEEEEEcC-cccCCCCCCEEE
Confidence 99999999999999999986 135899999983
No 247
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.54 E-value=8.5e-05 Score=69.31 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=50.1
Q ss_pred cCCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
...+.++|||||+.... .+...+..+|.+|+|++++...........+.+..++++.+.+++||.+
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 35678999999885443 3344557899999999987655555666667777888877889999998
No 248
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.42 E-value=0.0017 Score=61.15 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=49.3
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~ 213 (482)
+.+.++|||||+...........+..+|.+|+|+...........+.++.++..+++.+-+|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46789999999854422222222336899999999887777777777888888888844489999884
No 249
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.37 E-value=0.00043 Score=70.33 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..+..-|+|+|..++|||||+|+|++..
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 4566779999999999999999999864
No 250
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.35 E-value=0.0022 Score=61.95 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc----CCCcEEEEEecCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV----GVPNMVVFLNKQDQ 213 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~----~ip~iivviNK~D~ 213 (482)
+.+.++|||||+..... .+...+..+|.+|+|++............+..+... +++.+-+|+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999998854321 123456789999999987754445555566666653 45533389999994
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.32 E-value=0.0006 Score=65.88 Aligned_cols=125 Identities=20% Similarity=0.189 Sum_probs=67.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh---h------hcCCceeeeeeeE-e------------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE---E------RARGITINTATVE-Y------------ 143 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---e------~~~g~Ti~~~~~~-~------------ 143 (482)
-.++++|+.|+|||||++.|.+.....+....-. ..|.... + ...++.+-..... .
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~--g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA--AGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE--CCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE--eecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 4689999999999999999998765433211110 0111110 0 1123332211111 0
Q ss_pred -ecCCeEEEEEeCCCchhhHHHH-------Hhh-----cccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 144 -ETENRHYAHVDCPGHADYVKNM-------ITG-----AAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 144 -~~~~~~i~liDtPG~~~~~~~~-------~~~-----~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
...+....++||.|...+.... ... +..++-+++|+|++.|...... ...+....++. +++++|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~t--~iiiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGIT--GLILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCCC--EEEEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCCC--EEEEeC
Confidence 0123456799999953321111 111 1246777999998877654432 11223345776 467899
Q ss_pred CCCCC
Q 011581 211 QDQVD 215 (482)
Q Consensus 211 ~D~~~ 215 (482)
+|-..
T Consensus 256 lD~~~ 260 (302)
T 3b9q_A 256 LDGSA 260 (302)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 99754
No 252
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.31 E-value=0.00031 Score=67.72 Aligned_cols=127 Identities=19% Similarity=0.179 Sum_probs=66.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccC------Ch-hhhcCCceeeee-------ee------Eee
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDA------AP-EERARGITINTA-------TV------EYE 144 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~------~~-~e~~~g~Ti~~~-------~~------~~~ 144 (482)
...++++|..|+||||++..|.+.....+....-....... .. .....|+.+-.. .. ...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999987765544321100000000 00 001122222110 00 011
Q ss_pred cCCeEEEEEeCCCchhh----HHHHHhh--cccCCeEEEeecCCCCChHHHHHHHHHHH-HcCCCcEEEEEecCCCCC
Q 011581 145 TENRHYAHVDCPGHADY----VKNMITG--AAQMDGAILVVSGADGPMPQTKEHILLAK-QVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 145 ~~~~~i~liDtPG~~~~----~~~~~~~--~~~~D~~ilVvda~~g~~~~t~e~l~~~~-~~~ip~iivviNK~D~~~ 215 (482)
..++.+.|+||||.... ...+... ...+|.+++|+|+..+ ....+.++... ..++. -+++||+|...
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~~~~i~--givlnk~d~~~ 251 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGVT--GLVLTKLDGDA 251 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCCC--EEEEECGGGCS
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhhcCCCC--EEEEECCCCCc
Confidence 14678999999985322 2222111 1258999999998754 22223333222 23433 46789999754
No 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.31 E-value=0.00049 Score=62.69 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=73.7
Q ss_pred EEEEE-ecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhh---c---CCceeeee---eeEeecCCeEEEEEeCC
Q 011581 87 NIGTI-GHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER---A---RGITINTA---TVEYETENRHYAHVDCP 156 (482)
Q Consensus 87 ~I~i~-G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~---~---~g~Ti~~~---~~~~~~~~~~i~liDtP 156 (482)
.|+|+ +..|+||||+.-.|.......| ... .+|..+... . .....+.- ...--...+.++|||||
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl----liD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p 76 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETL----LIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQ 76 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEE----EEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE----EEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCC
Confidence 35665 5678999999999988776655 211 112111100 0 00000000 00000245779999999
Q ss_pred Cc-hhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc-CCCcEEEEEecCCCCC
Q 011581 157 GH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVPNMVVFLNKQDQVD 215 (482)
Q Consensus 157 G~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~-~ip~iivviNK~D~~~ 215 (482)
+. ... .+...+..+|.+|+++..+......+...++.+... +.+ +.+++|++|...
T Consensus 77 ~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 77 ARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPYP 134 (209)
T ss_dssp CCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTT
T ss_pred CCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCcc
Confidence 86 433 233456689999999998766566666777777764 666 788999999764
No 254
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.27 E-value=0.0012 Score=69.84 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=70.3
Q ss_pred CeeEEEE--eEEeeCCCceEEEEEEEeeeeecCCEEEEecCCccceeEEEEEeecccccceeecCCeEEEEEcccc-ccC
Q 011581 293 PFLLAVE--DVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQ-KAD 369 (482)
Q Consensus 293 ~~~~~I~--~v~~v~g~G~v~~G~v~sG~l~~g~~v~i~p~~~~~~~~V~~i~~~~~~v~~a~aG~~v~l~l~~~~-~~~ 369 (482)
|-.+.|. .+|+.+. |.|+..+|..|.|+.|..+.+ +.+. ...+|.||+.+++++++|..|+.|++.+.+.. ..+
T Consensus 463 ~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~-~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~ 539 (594)
T 1g7s_A 463 PASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE-TVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKT 539 (594)
T ss_dssp CEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC-EEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTT
T ss_pred eEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc-EEEEEehhcccCccccccCCCCEEEEEEeCcccCCC
Confidence 4555554 6998776 899999999999999999987 6664 67899999999999999999999999998632 268
Q ss_pred cccCeEEeC
Q 011581 370 IQRGMVLAK 378 (482)
Q Consensus 370 i~~G~vl~~ 378 (482)
++.||+|-.
T Consensus 540 ~~~~d~~~~ 548 (594)
T 1g7s_A 540 IHEGDTLYV 548 (594)
T ss_dssp BCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999864
No 255
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.25 E-value=0.0011 Score=63.50 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=53.5
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+.++|||||...... ........+|.+|+|+.+.........+.++.+...+.+.+-+|+||+|.-.
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4569999999865432 2233446799999999999888888888888999889887778999999654
No 256
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.21 E-value=0.0009 Score=66.13 Aligned_cols=125 Identities=20% Similarity=0.194 Sum_probs=67.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChh---h------hcCCceeeeeeeE--e-----------
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPE---E------RARGITINTATVE--Y----------- 143 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---e------~~~g~Ti~~~~~~--~----------- 143 (482)
-.|+++|+.|+|||||++.|.+.....+....-. ..|.... + ...++.+-..... +
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~--g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA--AGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE--CCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe--cccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 4689999999999999999988765433211110 0111110 0 1123322111100 0
Q ss_pred -ecCCeEEEEEeCCCchhhHHHHH-------h-----hcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEec
Q 011581 144 -ETENRHYAHVDCPGHADYVKNMI-------T-----GAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210 (482)
Q Consensus 144 -~~~~~~i~liDtPG~~~~~~~~~-------~-----~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK 210 (482)
...+....++||.|...+..... . .+..++-++||+|++.|....... ..+....++. +++++|
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~-~~~~~~~g~t--~iiiTh 312 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA-REFNEVVGIT--GLILTK 312 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH-HHHHHHTCCC--EEEEES
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH-HHHHHhcCCe--EEEEec
Confidence 01234568999999533211111 1 113467789999987776544321 1223345776 567899
Q ss_pred CCCCC
Q 011581 211 QDQVD 215 (482)
Q Consensus 211 ~D~~~ 215 (482)
+|-..
T Consensus 313 lD~~~ 317 (359)
T 2og2_A 313 LDGSA 317 (359)
T ss_dssp CTTCS
T ss_pred Ccccc
Confidence 99754
No 257
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.17 E-value=0.0014 Score=61.58 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=50.7
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCCh
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD 216 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~~ 216 (482)
.+.++|||+|+... ..+...+..+|.+|+|++............+..+...+.+.+-+|+|++|....
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 57799999998544 344455678999999998876555566666777777777767789999997653
No 258
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.12 E-value=0.0014 Score=62.20 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.5
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+.++|||||+..... .....+..+|.+|+|+.+.........+.++.+...+.+.+-+|+|++|.-.
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 4679999999864432 1222335689999999998888888888888888888884448999999643
No 259
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.10 E-value=0.0022 Score=61.87 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=51.4
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.+.++|||||+...... .......+|.+|+|+.+.........+.++.+...+++.+-+|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 45799999998654321 22234679999999999888888888888888888887555889999965
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.95 E-value=0.0031 Score=62.10 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=47.4
Q ss_pred hcccCCeEEEeecCCCCCh--HHHHHHHHHHHHcCCCcEEEEEecCCCCChHHHHHHHHHHHHHHHhhcCCCCCCccEEE
Q 011581 168 GAAQMDGAILVVSGADGPM--PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245 (482)
Q Consensus 168 ~~~~~D~~ilVvda~~g~~--~~t~e~l~~~~~~~ip~iivviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~i~ 245 (482)
.+..+|.+++| |+..... ....+++..+...+++ .++|+||+|+.++++. +.++ ++...+...| +++++
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~~~~-~~~~-~~~~~y~~~G-----~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVE-PLIVLNKIDLLDDEGM-DFVN-EQMDIYRNIG-----YRVLM 197 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCE-EEEEEECGGGCCHHHH-HHHH-HHHHHHHTTT-----CCEEE
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCchhH-HHHH-HHHHHHHhCC-----CcEEE
Confidence 35789999876 4444332 2223334445567888 6789999999985431 1122 3344455555 46899
Q ss_pred cchhhhH
Q 011581 246 GSALLAL 252 (482)
Q Consensus 246 ~Sa~~g~ 252 (482)
+|+.++.
T Consensus 198 ~Sa~~~~ 204 (358)
T 2rcn_A 198 VSSHTQD 204 (358)
T ss_dssp CBTTTTB
T ss_pred EecCCCc
Confidence 9998875
No 261
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.94 E-value=0.0025 Score=58.81 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=50.9
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
.+.++|||+|+... ..+...+..+|.+|+|++..........+.+..+...+.+.+-+|+||+|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 46799999988544 34455667899999999987655566667777777778776778999999654
No 262
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.85 E-value=0.0036 Score=58.49 Aligned_cols=65 Identities=9% Similarity=0.120 Sum_probs=46.1
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCC--------CcEEEEEecCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV--------PNMVVFLNKQDQ 213 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~i--------p~iivviNK~D~ 213 (482)
.+.++|||||+.... .+...+..+|.+|+|++............+..+...+. ..+-+|+|++|.
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 678999999985442 44556678999999999876555555556666655431 347789999984
No 263
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.77 E-value=0.0053 Score=57.80 Aligned_cols=66 Identities=9% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcC--CCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG--VPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~--ip~iivviNK~D~~ 214 (482)
..+.++|||||+.... .+...+..+|.+|+++.............+..+...+ .+ +.+|+|+++..
T Consensus 143 ~~yD~viiD~pp~~~~--~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~-~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDV--TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLP-IFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCSH--HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCC-EEEEEEEECTT
T ss_pred cCCCEEEEECcCCccH--HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCC-EEEEEecccCc
Confidence 3577999999985433 3445556799999999987655555666667777664 45 67899999543
No 264
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.74 E-value=0.015 Score=55.49 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=45.7
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH------cCCCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~------~~ip~iivviNK~D~~~ 215 (482)
.+.++|||||+..... +...+..+|.+|+++.+...........+..+.. .+++.+-+|+|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 4679999999865442 2233446999999999887665555555555443 25664558899999765
No 265
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.57 E-value=0.0032 Score=58.26 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=49.9
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcC--CCcEEEEEecCCCCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG--VPNMVVFLNKQDQVD 215 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~--ip~iivviNK~D~~~ 215 (482)
.+.++|||||+.... .+...+..+|.+|+++.........+...++.+...+ .+.+-+|+|++|...
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 467999999985433 3344567899999999987655566677777777776 445788999999654
No 266
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.52 E-value=0.0096 Score=55.74 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH------cCCCcEEEEEecCCCCC
Q 011581 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ------VGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~------~~ip~iivviNK~D~~~ 215 (482)
..+.++|||||+..... +...+..+|.+|+++.+...........+..+.. .+++.+-+|+|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc
Confidence 46789999999864432 3344567999999999876444333334433332 24552248899998654
No 267
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.44 E-value=0.0036 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...++++|..|||||||++.|++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 456899999999999999999875
No 268
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.41 E-value=0.0067 Score=57.86 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCchhhHH-HHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH----cCCCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHADYVK-NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ----VGVPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~~~~~-~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~----~~ip~iivviNK~D~~ 214 (482)
+.+.++||||||...... ........+|.+|+++.+...........++.+.. .+++.+-+++|+.+..
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 190 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch
Confidence 357899999998532100 00011246999999998765333333333444433 2566456789998743
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.33 E-value=0.001 Score=64.25 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...++++|++|+|||||+|.|++.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 357999999999999999999764
No 270
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.31 E-value=0.013 Score=55.07 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=41.0
Q ss_pred CeEEEEEeCCCchhhHHH-HHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHc----CCCcEEEEEecCCCC
Q 011581 147 NRHYAHVDCPGHADYVKN-MITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV----GVPNMVVFLNKQDQV 214 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~-~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~----~ip~iivviNK~D~~ 214 (482)
.+.++||||||....... .......+|.+|+++.+...........+..+... +++.+-+|+|+.+..
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~ 187 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA 187 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc
Confidence 578999999985321000 00112469999999988654444444444444432 556456889999753
No 271
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.27 E-value=0.12 Score=50.78 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=36.6
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 172 MDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 172 ~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.+.+++|.....-....+++.+..+...++|..-+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 4788999888777778889999999999999777899999865
No 272
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.07 E-value=0.22 Score=48.16 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=35.6
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+.+++|..+..-....+++.+..+...|++..-+|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 588899888776778888999999999999777899999865
No 273
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.03 E-value=0.0024 Score=62.90 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=20.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|++|+|||||+|.|++.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 36999999999999999999864
No 274
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.78 E-value=0.028 Score=56.82 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..+..-|+|+|..++|||+|+|.|+...
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~ 91 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYM 91 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHh
Confidence 4567788999999999999999887543
No 275
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.76 E-value=0.0057 Score=62.84 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=57.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcCCCCCcccccccCChhhhcCCceeeeeeeEeecCCeEEEEEeCCCchhh--H
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY--V 162 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~Ti~~~~~~~~~~~~~i~liDtPG~~~~--~ 162 (482)
...|+++|.+|+||||+..+|.......+.... ....|....+. .| ......++|..|...+ .
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~--~~~~d~~r~~~-~g------------~~~~~~ifd~~g~~~~r~r 103 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTR--EFNVGQYRRDM-VK------------TYKSFEFFLPDNEEGLKIR 103 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE--EEEHHHHHHHH-HC------------SCCCGGGGCTTCHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCce--EEecchhhhhh-cc------------CCCcccccCCCCHHHHHHH
Confidence 468999999999999999999865432211000 00000000000 00 0112346788886322 2
Q ss_pred HHH--------HhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCC
Q 011581 163 KNM--------ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202 (482)
Q Consensus 163 ~~~--------~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip 202 (482)
... ...+...++.++|+|++......-...+..++..+.+
T Consensus 104 e~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~ 151 (469)
T 1bif_A 104 KQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYK 151 (469)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCc
Confidence 222 2333446788999999987554444445566666765
No 276
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.66 E-value=0.0054 Score=58.55 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=26.5
Q ss_pred CeEEEEEeCCCchhhHHHHHhhcccCCeEEEeecCC
Q 011581 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 182 (482)
Q Consensus 147 ~~~i~liDtPG~~~~~~~~~~~~~~~D~~ilVvda~ 182 (482)
.+.++|||||+.. ...+...+..+|.+|+++...
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4679999999864 334556677899999999876
No 277
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.62 E-value=0.044 Score=57.90 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=34.4
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+.+++|+.+.......+.+.+..+...+++..-+|+|+++..
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 368999988776677888888888888988777889999854
No 278
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.58 E-value=0.007 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.+++++|+.|+|||||++.|.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998764
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.29 E-value=0.009 Score=52.68 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=20.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..++++|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999875
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.26 E-value=0.0091 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..++++|+.|+|||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 281
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.98 E-value=0.017 Score=52.07 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
.+...|+|+|++|+|||||++.|.+....
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45568999999999999999999877553
No 282
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.97 E-value=0.012 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-.++++|+.|+|||||++.|.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998753
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.95 E-value=0.013 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-++++|+.|+|||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999998754
No 284
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.90 E-value=0.013 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=20.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..++++|+.|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999875
No 285
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.74 E-value=0.015 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..++++|+.|+|||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998754
No 286
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.61 E-value=0.017 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=21.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.-++++|+.|+|||||++.|.+..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998764
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.56 E-value=0.023 Score=51.12 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
+...|+++|+.|+|||||++.|.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998753
No 288
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=94.49 E-value=0.29 Score=45.19 Aligned_cols=67 Identities=10% Similarity=0.053 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCchh-------hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 011581 146 ENRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 215 (482)
Q Consensus 146 ~~~~i~liDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~~ 215 (482)
..+.+.|||.+|.-- ....+... ...-+|+|+++..|....+...++.+...+++ .=+++|+++-..
T Consensus 130 ~~~D~vlIEGagGl~~pl~~~~~~adlA~~--l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 130 KTYDLVIVEGAGGLCVPITLEENMLDFALK--LKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp GTCSEEEEECCSCTTCBSSSSCBHHHHHHH--HTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred hcCCEEEEECCCCccccccccchHHHHHHH--cCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 356799999987311 11111111 12338899999988777777777888888999 889999998654
No 289
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.49 E-value=0.024 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999764
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.46 E-value=0.021 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.-|+++|++|+|||||++.|++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999865
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.45 E-value=0.031 Score=49.05 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=23.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhc
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASL 112 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~ 112 (482)
...++++|..|+|||||+++|+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3568999999999999999998765443
No 292
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.43 E-value=0.19 Score=52.92 Aligned_cols=44 Identities=11% Similarity=0.119 Sum_probs=35.8
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 171 QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 171 ~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
.+|.+++|+.+.......+...+..+...|++..-+|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 45889999887766667778888888889998777899999864
No 293
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.42 E-value=0.022 Score=49.24 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
+--.++++|+.|+|||||++.|.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34468999999999999999998865
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.28 E-value=0.035 Score=48.48 Aligned_cols=29 Identities=28% Similarity=0.218 Sum_probs=24.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g 113 (482)
...++++|..|+|||||+.+|+......|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 35789999999999999999987655443
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.19 E-value=0.022 Score=49.64 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.9
Q ss_pred EEEEEecCCccHHHHHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALT 106 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~ 106 (482)
-++++|+.|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999754
No 296
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.16 E-value=0.026 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..++|+|.+|+|||||++.|.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3689999999999999999987644
No 297
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.16 E-value=0.019 Score=53.15 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|||||||++.|.+-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999753
No 298
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.16 E-value=0.031 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=21.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..|+++|++|+|||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998653
No 299
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.14 E-value=0.02 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 300
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.10 E-value=0.5 Score=45.45 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=19.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.+.+.|++|+|||||+-+++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999988887543
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.09 E-value=0.033 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.114 Sum_probs=21.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..-|+++|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998653
No 302
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.03 E-value=0.79 Score=44.30 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=33.6
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 011581 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~ 213 (482)
+.+++|..........+.+.+..+...|++..-+|+|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47888888776666788888889999999866789999983
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.00 E-value=0.038 Score=48.02 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+...|+++|.+|+|||||.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999764
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.97 E-value=0.034 Score=49.73 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
+...|+++|.+|+|||||++.|.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999997654
No 305
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.95 E-value=0.026 Score=52.38 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.91 E-value=0.032 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
+--.++|+|+.|+|||||++.|.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44579999999999999999998765
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.87 E-value=0.032 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|+++|.+|+|||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 308
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.84 E-value=0.52 Score=45.75 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=34.1
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCC
Q 011581 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 213 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~ 213 (482)
+.+++|..+..-....+++.+..+...|++..-+|+|++..
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 47888887776666788889999999999977899999874
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.79 E-value=0.033 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=19.3
Q ss_pred EEEEEecCCccHHHHHHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~ 107 (482)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.73 E-value=0.035 Score=52.13 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=23.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
+.-.++++|+.|+|||||++.|.+...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 445799999999999999999987644
No 311
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.73 E-value=0.027 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999753
No 312
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.71 E-value=0.028 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999876
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.71 E-value=0.044 Score=48.75 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=22.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcC
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g 113 (482)
.++++|+.|+|||||++.|.+.....|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 489999999999999999998765333
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.66 E-value=0.029 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
No 315
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.63 E-value=0.026 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
No 316
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.62 E-value=0.032 Score=52.09 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEecCCccHHHHHHHHHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~ 107 (482)
.++++|+.|+|||||++.|.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999986
No 317
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.61 E-value=0.027 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999754
No 318
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.60 E-value=0.027 Score=53.41 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|||||||++.|.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 319
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.60 E-value=0.026 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=20.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999764
No 320
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.59 E-value=0.039 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEecCCccHHHHHHHHHHh
Q 011581 88 IGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~ 108 (482)
|+++|++|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999865
No 321
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.59 E-value=0.044 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.018 Sum_probs=20.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|+++|.+|+||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 322
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.59 E-value=0.029 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 323
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.58 E-value=0.027 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999753
No 324
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.55 E-value=0.21 Score=45.50 Aligned_cols=29 Identities=17% Similarity=-0.134 Sum_probs=22.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGN 114 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~ 114 (482)
.-+.+.|++|+||||++-+++......|.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~ 41 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADV 41 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 45788899999999988888776555443
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.55 E-value=0.044 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.1
Q ss_pred eEEEEEecCCccHHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
.+|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999975
No 326
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.53 E-value=0.039 Score=47.55 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=18.6
Q ss_pred eEEEEEecCCccHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAAL 105 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L 105 (482)
+.|+++|.+|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.52 E-value=0.04 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..|+++|.+|+|||||++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 328
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.52 E-value=0.031 Score=52.07 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999754
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.51 E-value=0.066 Score=47.81 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=23.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
+...|+++|.+|+|||||...|.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999999987654
No 330
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.49 E-value=0.038 Score=53.09 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=19.7
Q ss_pred eEEEEEecCCccHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALT 106 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~ 106 (482)
..++++|+.|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 331
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.49 E-value=0.36 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
.-+.|.|++|+|||||+.++.....
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999986543
No 332
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.46 E-value=0.03 Score=51.94 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999754
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.44 E-value=0.048 Score=52.64 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
.+...|+|+|+.|+|||||++.|.+...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4456799999999999999999987654
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.40 E-value=0.033 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36999999999999999999764
No 335
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.34 E-value=0.04 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.32 E-value=0.047 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|+++|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 337
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.31 E-value=0.032 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 36899999999999999999753
No 338
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.31 E-value=0.17 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
..-|+++|.+|+||||+..+|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999964
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.28 E-value=0.066 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=21.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..|++.|.+|+||||+.+.|.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999987654
No 340
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.28 E-value=0.036 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999764
No 341
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.26 E-value=0.033 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999753
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.23 E-value=0.09 Score=48.63 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
++..+|+++|.+|+||||+...|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999754
No 343
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.22 E-value=0.046 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
...|+++|+.|+|||||++.|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 344
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.21 E-value=0.05 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
..|+++|.+|+|||||...|....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997653
No 345
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.20 E-value=0.13 Score=46.75 Aligned_cols=28 Identities=25% Similarity=0.156 Sum_probs=24.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
....+.+.|++|+|||||+..+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999876544
No 346
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.13 E-value=0.21 Score=48.86 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..+.+.|++|+|||||+-++.....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999986543
No 347
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.12 E-value=0.038 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 348
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.12 E-value=0.06 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
...|+++|+.|+|||||++.|.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999997754
No 349
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=93.10 E-value=0.77 Score=41.89 Aligned_cols=67 Identities=13% Similarity=0.009 Sum_probs=45.3
Q ss_pred CCeEEEEEeCCCchh-------hHHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 146 ENRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 146 ~~~~i~liDtPG~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
..+.+.+||+||.-. ........ ...-+|+|+++..+-...+...++.+...+++..=+++|++|-.
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~--l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKA--LQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHH--HTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHH--cCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 467899999987311 11111111 12348899999887777777777778888988556889999754
No 350
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.10 E-value=0.036 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..++++|++|+|||||+|.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 36899999999999999999754
No 351
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.07 E-value=0.13 Score=45.85 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=23.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
....|+++|..|+|||||++.|.+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446799999999999999999987543
No 352
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.07 E-value=0.037 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999753
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.07 E-value=0.7 Score=44.89 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
-+.+.|.+|+|||||+-.+......
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999766444
No 354
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.07 E-value=0.039 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.188 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999753
No 355
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.07 E-value=0.06 Score=47.80 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.|++.|.+|+||||+...|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999997653
No 356
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.06 E-value=0.5 Score=41.82 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.+.+.|++|+|||+|+..+....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999997653
No 357
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.06 E-value=0.038 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999754
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.05 E-value=0.086 Score=46.31 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=23.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
+...|+++|.+|+||||+...|......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999876544
No 359
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.04 E-value=0.52 Score=46.06 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=34.8
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCCCC
Q 011581 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214 (482)
Q Consensus 173 D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D~~ 214 (482)
+.+++|..+..-....+.+.+..+...|++..-+|+|++.-.
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 578888887766667888888999999999778899999864
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.02 E-value=0.053 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||+..|++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 361
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.02 E-value=0.067 Score=47.72 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999999764
No 362
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.99 E-value=0.063 Score=48.10 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+...|+++|.+|+|||||++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
No 363
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.98 E-value=0.033 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
--.++++|+.|+|||||++.|++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347999999999999999999753
No 364
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.95 E-value=0.032 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=15.5
Q ss_pred eEEEEEecCCccHHHHHHHHH-Hh
Q 011581 86 VNIGTIGHVDHGKTTLTAALT-MA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~-~~ 108 (482)
..++++|+.|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999998 65
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.93 E-value=0.061 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
++|+++|.+|+||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999654
No 366
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=92.92 E-value=1.3 Score=40.94 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=72.3
Q ss_pred ceEEEEEec-CCccHHHHHHHHHHhHHhcCCCCCccc-----c---cccCChhhhcCCceeeeeeeEe------------
Q 011581 85 HVNIGTIGH-VDHGKTTLTAALTMALASLGNSAPKKY-----D---EIDAAPEERARGITINTATVEY------------ 143 (482)
Q Consensus 85 ~~~I~i~G~-~~~GKSTLi~~L~~~~~~~g~~~~~~~-----~---~~d~~~~e~~~g~Ti~~~~~~~------------ 143 (482)
...|.|.|- +|+|||++.-.|+......|....... . ..|..-.....|.......+.|
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~ 105 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEH 105 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHH
Confidence 356778886 699999999999887776664321100 0 0011111111222111111111
Q ss_pred ---------------e--cCCeEEEEEeCCCch-----h--h-HHHHHhhcccCCeEEEeecCCCCChHHHHHHHHHHHH
Q 011581 144 ---------------E--TENRHYAHVDCPGHA-----D--Y-VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ 198 (482)
Q Consensus 144 ---------------~--~~~~~i~liDtPG~~-----~--~-~~~~~~~~~~~D~~ilVvda~~g~~~~t~e~l~~~~~ 198 (482)
+ ...+++.+||.||-- + + ...... ....-+|+|+|+..+....+...++.+..
T Consensus 106 ~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~--~l~~pVILV~~~~~g~i~~~~lt~~~l~~ 183 (251)
T 3fgn_A 106 AGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAV--DVAAAALVVVTADLGTLNHTKLTLEALAA 183 (251)
T ss_dssp TTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHH--HTTCEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHH--HcCCCEEEEEcCCCccHHHHHHHHHHHHh
Confidence 0 135679999998731 1 1 111111 12345889999988777777777777778
Q ss_pred cCCCcEEEEEecCC
Q 011581 199 VGVPNMVVFLNKQD 212 (482)
Q Consensus 199 ~~ip~iivviNK~D 212 (482)
.+++-.=+++||+.
T Consensus 184 ~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 184 QQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCCEEEEEEEEEC
T ss_pred CCCCEEEEEEECCC
Confidence 88885568899985
No 367
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.91 E-value=0.055 Score=48.41 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEEecCCccHHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 368
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.86 E-value=0.073 Score=46.69 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=21.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..|++.|.+|+||||+.+.|.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999976544
No 369
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.84 E-value=0.066 Score=46.48 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEEEEecCCccHHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 370
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.80 E-value=0.082 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=22.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
...|++.|.+|+||||+...|.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999986544
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.74 E-value=0.067 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
++|+++|.+|+||||+...|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999643
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.72 E-value=0.044 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.1
Q ss_pred EEEEEecCCccHHHHHHHHHHhHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
.|+|.|..|+|||||++.|.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987644
No 373
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.70 E-value=0.076 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..+|+++|.+|+||||+...|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 374
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.69 E-value=0.09 Score=46.22 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.67 E-value=0.056 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.-+++++|+.|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.66 E-value=0.1 Score=46.78 Aligned_cols=27 Identities=30% Similarity=0.196 Sum_probs=22.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
...|++.|.+|+||||+.+.|......
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999866443
No 377
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.64 E-value=0.077 Score=50.61 Aligned_cols=30 Identities=20% Similarity=0.079 Sum_probs=24.7
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
.+....|+|+|.+|+|||||++.|......
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999999999999999999776543
No 378
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.63 E-value=0.075 Score=46.42 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
...++++|++|+|||||+.++.+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987653
No 379
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.59 E-value=0.059 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred eEEEEEecCCccHHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
-.++++|+.|+|||||+..|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 380
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.58 E-value=0.053 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999999753
No 381
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.56 E-value=0.065 Score=52.72 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=22.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
-.|+++|+.|+|||||++.|++....
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 38999999999999999999887544
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.56 E-value=0.084 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 383
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.53 E-value=0.052 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999764
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.51 E-value=0.082 Score=51.16 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..+-|+++|++|+|||||++.|.+...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999876543
No 385
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.50 E-value=0.056 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|||||||++.|.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35899999999999999999763
No 386
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.46 E-value=0.09 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|.++|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.46 E-value=0.061 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.367 Sum_probs=20.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999864
No 388
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.42 E-value=0.52 Score=46.38 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-+.|.|.+++|||||+-.|....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHH
Confidence 57889999999999999987653
No 389
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.41 E-value=0.094 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.2
Q ss_pred CceEEEEEecCCccHHHHHHHHHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
....|+++|.+|+||||+.+.|..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 390
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.41 E-value=0.1 Score=46.60 Aligned_cols=27 Identities=26% Similarity=0.092 Sum_probs=22.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
...|++.|.+|+||||+.+.|......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999765443
No 391
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.40 E-value=0.087 Score=50.66 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.....|+++|+.|+|||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999998754
No 392
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.33 E-value=0.064 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999864
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.32 E-value=0.1 Score=45.83 Aligned_cols=24 Identities=33% Similarity=0.176 Sum_probs=21.0
Q ss_pred EEEEEecCCccHHHHHHHHHHhHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
.|++.|.+|+||||+.+.|.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999976543
No 394
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.31 E-value=0.088 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.8
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998653
No 395
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.29 E-value=0.07 Score=45.41 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=23.0
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
+...++++|++|+|||||+..+.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987644
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.21 E-value=0.096 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+..+|+++|.+|+||||+...|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 397
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.20 E-value=0.089 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..+|+++|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999654
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.20 E-value=0.11 Score=45.84 Aligned_cols=27 Identities=30% Similarity=0.204 Sum_probs=22.2
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcC
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g 113 (482)
-|++.|..|+||||+++.|.......|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999999986654333
No 399
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.16 E-value=0.11 Score=45.75 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 400
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.14 E-value=0.08 Score=52.45 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=23.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
+.-.++++|++|+|||||++.|++....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3457999999999999999999986543
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.10 E-value=0.058 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|++.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999865
No 402
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.98 E-value=0.071 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999864
No 403
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.91 E-value=0.073 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999999864
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.90 E-value=0.097 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.254 Sum_probs=20.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
...|+++|+.|+|||||++.|..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999973
No 405
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.90 E-value=0.082 Score=52.33 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=23.7
Q ss_pred CCceEEEEEe-cCCccHHHHHHHHHHhHHhcC
Q 011581 83 KPHVNIGTIG-HVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 83 ~~~~~I~i~G-~~~~GKSTLi~~L~~~~~~~g 113 (482)
+....|+|.| ..|+||||+.-.|.......|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g 172 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG 172 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC
Confidence 3456788886 788999999999977655544
No 406
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.88 E-value=0.097 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|++.|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 407
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.87 E-value=0.12 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.5
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
....|+++|.+|+||||+...|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.86 E-value=0.11 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+|++.|.+|+||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 409
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.83 E-value=0.075 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5899999999999999999864
No 410
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.78 E-value=0.077 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999864
No 411
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.75 E-value=0.11 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999743
No 412
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.67 E-value=0.08 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.1
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5899999999999999999864
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.65 E-value=0.096 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+|++.|.+|+||||+...|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.59 E-value=0.083 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35899999999999999999864
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.59 E-value=0.13 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=21.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 416
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.56 E-value=0.091 Score=52.84 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.+.-.|+|+|+.|+|||||++.|++..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 344579999999999999999998764
No 417
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.55 E-value=0.071 Score=55.12 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+++++|++|||||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999864
No 418
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.54 E-value=0.16 Score=44.21 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
...|+++|..|+||||+.+.|....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999997654
No 419
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.50 E-value=0.38 Score=47.21 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..+.+.|.+|+|||||+-+|.....
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999986543
No 420
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.48 E-value=0.07 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.2
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|+.|+|||||++.|.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5899999999999999999864
No 421
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.45 E-value=0.096 Score=45.66 Aligned_cols=24 Identities=38% Similarity=0.286 Sum_probs=20.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|+++|.+|+||||+...|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 422
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.40 E-value=0.1 Score=45.27 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+|+++|.+|+||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.37 E-value=0.12 Score=45.19 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.7
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.+|+|+.|+|||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 424
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.29 E-value=0.13 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|+++|.+|+||||+...|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 425
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.26 E-value=0.14 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|+++|.+|+||||+...|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 426
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.25 E-value=0.61 Score=44.24 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=25.5
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHhc
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASL 112 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~~ 112 (482)
..+..++.+.|++|+|||+|+.++.......
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4556789999999999999999988765543
No 427
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.25 E-value=0.16 Score=47.35 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=23.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHHhcC
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~~~g 113 (482)
...|+++|.+|+||||+...|.......|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 35799999999999999999986544333
No 428
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.22 E-value=0.13 Score=45.79 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.2
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHH
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
...+..|+++|.+||||||+.+.|..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999999999999864
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.19 E-value=0.15 Score=44.68 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|+++|.+|+||||+...|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999653
No 430
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.10 E-value=0.07 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35899999999999999999864
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.06 E-value=0.14 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
++|+++|++||||+|+...|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 432
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.05 E-value=0.11 Score=51.82 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-.++++|+.|+|||||++.|.+-.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 358999999999999999998753
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.95 E-value=0.14 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+|+++|.+|+||||+...|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 434
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.93 E-value=0.15 Score=46.05 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=21.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
-.++++|++|+|||||+..|.+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999986544
No 435
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.85 E-value=0.27 Score=42.46 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=22.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
....+.+.|++|+|||+|+..+.....
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999987643
No 436
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.84 E-value=0.15 Score=46.06 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred eEEEEEecCCccHHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
..|++.|..||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.78 E-value=0.22 Score=44.73 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
...|+++|.+|+||||+...|.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999977644
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.74 E-value=0.54 Score=46.22 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-.+|+|+.|+|||||+++|+...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999998654
No 439
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.74 E-value=0.14 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
....|+|.|.+|+||||+.+.|...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999654
No 440
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.71 E-value=0.18 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+....|+++|.+|+||||+...|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999764
No 441
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=90.64 E-value=0.31 Score=37.41 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=43.6
Q ss_pred EeeeeecCCEEEEe-cCCccceeEEEEEe-eccccccee-ecCCeEEEEEccccccCcccCeEEe
Q 011581 316 ERGTIKVGETVDLV-GLKETRNFTVTGVE-MFQKTLDEA-MAGDNVGLLLRGVQKADIQRGMVLA 377 (482)
Q Consensus 316 ~sG~l~~g~~v~i~-p~~~~~~~~V~~i~-~~~~~v~~a-~aG~~v~l~l~~~~~~~i~~G~vl~ 377 (482)
....+.+||.|.+. |.+....++|..|. ...++++.| .+|+.+.|.+. ..+..||+|-
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~----~~~~~~dilR 86 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVK----RPLFPYNMMR 86 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECS----SCCCTTCEEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECC----CCCCCCCEEE
Confidence 46788999999976 55655678888887 445779998 99999999754 3466777763
No 442
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.56 E-value=0.16 Score=48.24 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
....|+++|.+|+|||||...|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999754
No 443
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.14 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.--.++++|+.|+|||||++.|.+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34579999999999999999998764
No 444
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.54 E-value=0.1 Score=47.67 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.3
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+..-|++.|..|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999998653
No 445
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.52 E-value=0.17 Score=43.48 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.-+|++.|.+|+||||+...|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998653
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.51 E-value=0.16 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=19.9
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 447
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.51 E-value=0.14 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.|+++|.+|+|||||...|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999764
No 448
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.50 E-value=1.5 Score=42.01 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=21.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
--+.+.|.+|+|||||+-.+.....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999976544
No 449
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.41 E-value=0.93 Score=44.18 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.....+.+.|++|+|||||+..+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 455689999999999999999998654
No 450
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.38 E-value=0.27 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.4
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+.+.|++|+|||||..++...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999999764
No 451
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.22 E-value=0.17 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-+++++|+.|+|||||++.|.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 452
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.10 E-value=0.19 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
...|++.|++|+||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999744
No 453
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.06 E-value=0.43 Score=45.30 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
++...+.+.|++|+|||||+..|....
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 344689999999999999999998654
No 454
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.97 E-value=0.24 Score=45.35 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=23.6
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
....|++.|.+|+||||+++.|......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3467999999999999999999876543
No 455
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.97 E-value=0.11 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=16.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|++.|.+|+||||+...|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999643
No 456
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.91 E-value=0.23 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..+|+++|.+|+||||+...|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999754
No 457
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.83 E-value=0.16 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.3
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-.++++|+.|+|||||++.|.+-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998753
No 458
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.82 E-value=0.16 Score=43.70 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..|++.|.+|+||||+...|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 459
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.80 E-value=1.2 Score=45.99 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..|+++|.+|+||||+...|.....
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999976543
No 460
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.78 E-value=0.17 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..++++|++|+|||||+++|.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34999999999999999999864
No 461
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.77 E-value=0.2 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.7
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.|+++|.+|+||||+...|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999654
No 462
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.75 E-value=0.23 Score=47.18 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=22.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
--++++|++|+|||||+..|.+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999876543
No 463
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.66 E-value=0.22 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.2
Q ss_pred ceEEEEEecCCccHHHHHHHHH
Q 011581 85 HVNIGTIGHVDHGKTTLTAALT 106 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~ 106 (482)
...|+++|.+|+||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999986
No 464
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.65 E-value=0.81 Score=44.79 Aligned_cols=42 Identities=10% Similarity=-0.032 Sum_probs=35.6
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHHHHHcCCCcEEEEEecCC
Q 011581 171 QMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQD 212 (482)
Q Consensus 171 ~~D~~ilVvda~~g~~~~t~e~l~~~~~~~ip~iivviNK~D 212 (482)
.+|.+++|+.+.......+.+.+..+...+++..-+|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 578899999877666677888888888899997778999998
No 465
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.62 E-value=1.6 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.3
Q ss_pred EEEEecCCccHHHHHHHHHHhH
Q 011581 88 IGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 88 I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
+.+.|++|+|||||+..|.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 466
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.61 E-value=0.18 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+|+++|.+|+||||+.+.|...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999753
No 467
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.59 E-value=1.1 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.065 Sum_probs=21.9
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
....+.+.|++|+|||||+.+|...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999765
No 468
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.58 E-value=0.33 Score=41.83 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHhH
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
.....+.+.|++|+|||||+..+....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999997654
No 469
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.46 E-value=0.2 Score=42.52 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEecCCccHHHHHHHHHHhH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-.+|+|+.|+|||||+.+|....
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999997543
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.43 E-value=0.17 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
-.++++|+.|+|||||++.|.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998753
No 471
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.42 E-value=0.19 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..++++|++|+|||||+..|.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999864
No 472
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.34 E-value=0.5 Score=41.78 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..+.+.|++|+|||||+.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999986543
No 473
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.25 E-value=0.46 Score=42.64 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=26.7
Q ss_pred HhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 74 AARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 74 ~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
.....+........+.+.|++|+|||||+..+.....
T Consensus 34 ~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 34 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333444444345789999999999999999986644
No 474
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.22 E-value=2 Score=41.28 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
..+.+.|++|+|||||+..|...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHH
Confidence 46899999999999999999754
No 475
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.11 E-value=0.22 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-+++++|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999864
No 476
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.06 E-value=0.17 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceEEEEEecCCccHHHHHHHHHHh
Q 011581 85 HVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 85 ~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
--.++++|+.|+|||||++.|.+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 347999999999999999999764
No 477
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=89.05 E-value=1.7 Score=41.73 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=22.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
......|.+.|++|+|||+|+.++...
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345567999999999999999999653
No 478
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.00 E-value=0.18 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.87 E-value=0.27 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+.+++++|.+|+||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999754
No 480
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.84 E-value=0.23 Score=44.49 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.0
Q ss_pred eEEEEEecCCccHHHHHHHHHH
Q 011581 86 VNIGTIGHVDHGKTTLTAALTM 107 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~ 107 (482)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 481
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.76 E-value=0.32 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=19.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.-|.++|++||||+|....|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999754
No 482
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.75 E-value=0.24 Score=48.10 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=22.4
Q ss_pred CceEEEEEecCCccHHHHHHHHHHhH
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMAL 109 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~~ 109 (482)
+...++++|++|+|||||++.|.+..
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34569999999999999999998764
No 483
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.71 E-value=0.97 Score=42.60 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.1
Q ss_pred CceEEEEEecCCccHHHHHHHHHHh
Q 011581 84 PHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 84 ~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
+...+.+.|++|+|||||+.++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.69 E-value=0.65 Score=47.34 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHhhhhhhccCCceEEEEEecCCccHHHHHHHHHHhHH
Q 011581 71 IVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 71 ~~~~~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
..+.+...+.+ ....++.++|++|+|||+|+..|.....
T Consensus 188 ~i~~l~~~l~r-~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 188 EIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 34444444443 3456899999999999999999987653
No 485
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.58 E-value=0.17 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999999875
No 486
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.55 E-value=3.7 Score=39.04 Aligned_cols=34 Identities=24% Similarity=0.079 Sum_probs=22.2
Q ss_pred hhhhhhccCCceEEEEEecCCccHHHHHHHHHHh
Q 011581 75 ARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 75 ~~~~~~~~~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
....+.......-+.+.|++|+|||+++.+|...
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3333333333334556677999999999999754
No 487
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.47 E-value=1.1 Score=43.02 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+...|.+.|++|+|||+|+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34578999999999999999999764
No 488
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.47 E-value=1.5 Score=38.78 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=22.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhcCC
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASLGN 114 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~g~ 114 (482)
.-..+.|+.|+||||++-.+.......|.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~ 37 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQ 37 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 35788999999999988888766544443
No 489
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.43 E-value=2 Score=43.23 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+..-|.+.|++|+|||+|+.++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999864
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.40 E-value=0.21 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 46999999999999999999875
No 491
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.39 E-value=0.25 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999863
No 492
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.35 E-value=0.25 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.++++|++|+|||||+..|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999865
No 493
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.31 E-value=0.95 Score=45.76 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=22.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHhHHhc
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMALASL 112 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~~~~~ 112 (482)
--+.+.|.+|+|||||+-.+.......
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 358999999999999999998665443
No 494
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.29 E-value=0.3 Score=48.35 Aligned_cols=26 Identities=38% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.+...++++|++|+|||||+..|.+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999864
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.08 E-value=0.34 Score=44.29 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCccHHHHHHHHHHh
Q 011581 83 KPHVNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 83 ~~~~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.....|+++|.+|+||||+...|...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998753
No 496
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.06 E-value=0.32 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.0
Q ss_pred EEEEEecCCccHHHHHHHHHHh
Q 011581 87 NIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
.|++.|.+|+||||+...|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999654
No 497
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.97 E-value=0.72 Score=47.43 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=20.4
Q ss_pred EEEEEecCCccHHHHHHHHHHhHH
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALA 110 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~ 110 (482)
-+.|.|.+|+|||||+-.+.....
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHT
T ss_pred EEEEeecCCCCchHHHHHHHHHHH
Confidence 578999999999999999876543
No 498
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.90 E-value=13 Score=35.53 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=25.6
Q ss_pred cCCceEEEEEecCCccHHHHHHHHHHhHHh
Q 011581 82 KKPHVNIGTIGHVDHGKTTLTAALTMALAS 111 (482)
Q Consensus 82 ~~~~~~I~i~G~~~~GKSTLi~~L~~~~~~ 111 (482)
.....++.+.|++|.|||++++.++.....
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456778999999999999999999877543
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.76 E-value=0.26 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHh
Q 011581 86 VNIGTIGHVDHGKTTLTAALTMA 108 (482)
Q Consensus 86 ~~I~i~G~~~~GKSTLi~~L~~~ 108 (482)
-.++++|+.|+|||||++.|.+.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
No 500
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.60 E-value=1.1 Score=39.40 Aligned_cols=27 Identities=19% Similarity=-0.024 Sum_probs=20.6
Q ss_pred EEEEEecCCccHHHHHHHHHHhHHhcC
Q 011581 87 NIGTIGHVDHGKTTLTAALTMALASLG 113 (482)
Q Consensus 87 ~I~i~G~~~~GKSTLi~~L~~~~~~~g 113 (482)
-+.+.|+.|+||||++-++.......|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g 31 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 467999999999999877765544333
Done!