RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011581
(482 letters)
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 839 bits (2170), Expect = 0.0
Identities = 288/410 (70%), Positives = 336/410 (81%), Gaps = 7/410 (1%)
Query: 75 ARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSA-PKKYDEIDAAPEERARG 133
A+G+F R KPHVN+GTIGHVDHGKTTLTAALT A+ + K Y +ID APEERARG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 193
ITINTA VEYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 194 LLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253
LLA+QVGVP +VVF+NK D VDD ELL LVE+EVR+LL+ YEFPGD+VP+I GSALLALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATG 313
+ NP +RGEN+WVDKI+EL+D++D YIP P R D PFL+ VEDVF+ITGRGTVATG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 314 RVERGTIKVGETVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQR 372
R+ERG +KVG+ V++VGL ETR VTGVEM +KTL E +AGDNVG+LLRGV + +++R
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 373 GMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDK 432
G VLAKPG+ITPHTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQL----- 355
Query: 433 DEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+MVMPGD + VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 356 PPGVEMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 851 bits (2199), Expect = 0.0
Identities = 278/460 (60%), Positives = 331/460 (71%), Gaps = 15/460 (3%)
Query: 23 ASASPSNSLLSTTALRTKLTPSNLSSSFLPPFATTTAVTVTTTRRRSLIVRAARGKFERK 82
PS ++ + S ++ KFER
Sbjct: 234 FVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQSHMSKEKFERT 293
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE 142
KPHVN+GTIGHVDHGKTTLTAA+T LA A + +D+ID APEE+ARGITINT+ VE
Sbjct: 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 353
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
Y+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+ DGPMPQT+EHILL +QVGVP
Sbjct: 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 413
Query: 203 NMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++VFLNK D VDDEELL+LVE+EVRELLS Y+FPGDD PI+ GSAL ALE
Sbjct: 414 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE--------- 464
Query: 263 RGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKV 322
G+ +W KI EL +DSYIP P+R D PFLL +EDVFSI+GRGTV TGRVERG IKV
Sbjct: 465 -GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523
Query: 323 GETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI 382
GE V++VG+KET+ T TGVEMF+K LDE AG+NVG+LLRG+++ +I+RG VLAKPGTI
Sbjct: 524 GEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTI 583
Query: 383 TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 442
PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG + E +MVMPG
Sbjct: 584 KPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIEL-----PEGVEMVMPG 638
Query: 443 DRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
D IKMVV LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct: 639 DNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 678
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 809 bits (2091), Expect = 0.0
Identities = 212/399 (53%), Positives = 282/399 (70%), Gaps = 13/399 (3%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE 142
KPHVN+GTIGHVDHGKTTLTAA+T LA G + KKY+EID APEERARGITIN A VE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
Y T RHYAH DCPGHADYVKNMITG A +DG ILVV+ DGPMPQT+EH+LLA+Q+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 203 NMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++VV++NK D V D E+++LVELE+RELL+ + + G++ PII GSAL ALE
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ-------- 172
Query: 263 RGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKV 322
R + + +L+D+VD+YIP+P R + PFLL VE V+SI GRGTV TG +ERG +K
Sbjct: 173 RDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKK 232
Query: 323 GETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTI 382
G+ + +G + VTG+EMF K+LD A AGDN+G L+RG+++ D++RG+V+AKPG+I
Sbjct: 233 GDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSI 292
Query: 383 TPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPG 442
PH K A VY+L KEEGGRH PF + + P + T D+ R+ ++ MPG
Sbjct: 293 QPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIIL-----PPGKELAMPG 347
Query: 443 DRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 481
+ +K+ + L P+ E+G RF +R+G +T+G G++
Sbjct: 348 EDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTP 386
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 591 bits (1525), Expect = 0.0
Identities = 75/412 (18%), Positives = 145/412 (35%), Gaps = 52/412 (12%)
Query: 71 IVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER 130
+ G R N+ IG G+T+L A L
Sbjct: 7 HHHHSSGLVPRGSHMANVAIIGTEKSGRTSLAANLG------------------------ 42
Query: 131 ARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK 190
+G + + + E R+ VD + +K++IT D A+L + G T
Sbjct: 43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTG 101
Query: 191 EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALL 250
E I+ +G + ++ L + D + ++ +++ + S D IS +
Sbjct: 102 ECIIALDLLGFKHGIIALTRSDSTHM-HAIDELKAKLKVITSGTVL--QDWECISLNTNK 158
Query: 251 ALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTD-LPFLLAVEDVFSITGRGT 309
+ + + VD++ ++ V I + + LP + ++ F++TG+G
Sbjct: 159 SAK----------NPFEGVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGC 208
Query: 310 VATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKAD 369
V G V++G K + + L + ++ +D A AG VG+ L+ VQ D
Sbjct: 209 VVLGVVKQGISKDKDKTKIFPLDRD--IEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKD 266
Query: 370 IQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIM 429
I+RG +++ +T V K+ ++ RV I+
Sbjct: 267 IERGFIISDKEIVTTDYTLECTVSKFTKKIEP-------ASVLHLFVGLQSEPVRVEKIL 319
Query: 430 NDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGK---TVGAGVIQ 478
D E + PG + + +A + RF + G +
Sbjct: 320 VDG-NEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLANLDLTQRFAAYGFSK 370
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 580 bits (1498), Expect = 0.0
Identities = 107/433 (24%), Positives = 183/433 (42%), Gaps = 64/433 (14%)
Query: 72 VRAARGKFERKKPH-----VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAA 126
+ +PH +N+G GH+DHGKTTL+ LT + D
Sbjct: 1 MHHHHHHSIEGRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKL 51
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
PE + RGITI+ ++ EN VD PGHAD ++ +++ A +D A++VV +GP
Sbjct: 52 PESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK 111
Query: 187 PQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISG 246
QT EH+L+ +P ++V + K D EE+ E+ ++ +L S + II
Sbjct: 112 TQTGEHMLILDHFNIP-IIVVITKSDNAGTEEIK-RTEMIMKSILQST-HNLKNSSIIPI 168
Query: 247 SALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQ--RQTDLPFLLAVEDVFSI 304
SA + EL + + + + + R T+ F + ++ F I
Sbjct: 169 SAKTGFG------------------VDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPI 210
Query: 305 TGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRG 364
G GTV TG + +G +KVG+ + ++ + + V ++ F++++ EA AGD VG+ ++G
Sbjct: 211 KGAGTVVTGTINKGIVKVGDELKVLPINMST--KVRSIQYFKESVMEAKAGDRVGMAIQG 268
Query: 365 VQKADIQRGMVLAKPGT-ITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMR----TT 419
V I RG +L T + K +A + + F P+ +
Sbjct: 269 VDAKQIYRGXILTSKDTKLQTVDKIVAKIKISD--------IFKYNLTPKMKVHLNVGML 320
Query: 420 DVTGRV------SSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIR------E 467
V + +++ V+ G+ EL V E G R I
Sbjct: 321 IVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPT 380
Query: 468 GGKTVGAGVIQSI 480
+ G G+I+
Sbjct: 381 TLRIXGHGLIEEF 393
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 563 bits (1452), Expect = 0.0
Identities = 115/455 (25%), Positives = 184/455 (40%), Gaps = 102/455 (22%)
Query: 78 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITIN 137
K + ++ VNIG +GHVDHGKTTLT ALT D EE RGITI
Sbjct: 3 KRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIK 49
Query: 138 TATVEYETEN-----------------------RHYAHVDCPGHADYVKNMITGAAQMDG 174
+ E R + +D PGH + M+ GA+ MDG
Sbjct: 50 IGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDG 109
Query: 175 AILVVSGADG-PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSS 233
AILV++ + P PQT+EH++ + +G N+++ NK + VD E+ L+ +
Sbjct: 110 AILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG- 168
Query: 234 YEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLP 293
++ PII SAL I L+ +++ +IP P+R + P
Sbjct: 169 --TVAENAPIIPISALHGAN------------------IDVLVKAIEDFIPTPKRDPNKP 208
Query: 294 FLLAVEDVFSITGRGT--------VATGRVERGTIKVGETVDLVGLKETRNF-------- 337
+ V F + GT V G + +G +KVG+ +++
Sbjct: 209 PKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPI 268
Query: 338 --TVTGVEMFQKTLDEAMAGDNVGL---LLRGVQKADIQRGMVLAKPGTITP-HTKFLAI 391
+ ++ + ++EA G VG+ L + K D+ G V+ KPG + P
Sbjct: 269 TTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLE 328
Query: 392 VYVLKKEEGGRH----SPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKM 447
V++L++ G P + T G +V + ++
Sbjct: 329 VHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMG--------------LVTGLGKDEI 374
Query: 448 VVELIMPVACEQGMRFAI-REGGK---TVGAGVIQ 478
V+L +PV E G R AI R+ G +G G+I+
Sbjct: 375 EVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK 409
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 562 bits (1450), Expect = 0.0
Identities = 106/436 (24%), Positives = 177/436 (40%), Gaps = 71/436 (16%)
Query: 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALAS--LGNSAPKKY-DEIDAAPEERARGIT 135
+ + +P VNIG +GHVDHGKTTL A+T S LG + E PE +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPS 61
Query: 136 INTATVEYETEN-RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-PMPQTKEHI 193
+ + E + R + +D PGH + M++GAA MDGAILVV+ + P PQT+EH
Sbjct: 62 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 121
Query: 194 LLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253
+ +GV N+++ NK D V EE L + ++VPII SAL +
Sbjct: 122 VALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFT---KGTWAENVPIIPVSALHKIN 178
Query: 254 ALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITG------- 306
I L++ ++ YI P R ++ V F +
Sbjct: 179 ------------------IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNE 220
Query: 307 -RGTVATGRVERGTIKVGETVDLV-GLKETRNF---------TVTGVEMFQKTLDEAMAG 355
+G V G + +G KV + + ++ GL+ + ++ + + EA G
Sbjct: 221 LKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPG 280
Query: 356 DNVGL---LLRGVQKADIQRGMVLAKPGT-ITPHTKFLAIVYVLKK----EEGGRHSPFF 407
V + L + KAD G ++ + +L++ +E + P
Sbjct: 281 GLVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIR 340
Query: 408 AGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQG-MRFAI- 465
A + ++ G +V + ++ VEL PVA +R I
Sbjct: 341 AKETLMLSVGSSTTLG--------------IVTSVKKDEIEVELRRPVAVWSNNIRTVIS 386
Query: 466 -REGGK--TVGAGVIQ 478
+ G+ +G G+++
Sbjct: 387 RQIAGRWRMIGWGLVE 402
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 546 bits (1408), Expect = 0.0
Identities = 115/452 (25%), Positives = 176/452 (38%), Gaps = 102/452 (22%)
Query: 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT 140
+ VNIG +GHVDHGKT+LT ALT D EE RGI+I
Sbjct: 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGY 50
Query: 141 VEYETEN-----------------------RHYAHVDCPGHADYVKNMITGAAQMDGAIL 177
+ E R + VD PGH + M++GA+ MDGAIL
Sbjct: 51 ADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAIL 110
Query: 178 VVSGADG-PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEF 236
V++ + P PQTKEH++ + +G+ +++ NK D VD+++ + E +
Sbjct: 111 VIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK---GT 167
Query: 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLL 296
++ PII SA I L+ ++ +IP P+R D +
Sbjct: 168 IAENAPIIPISA------------------HHEANIDVLLKAIQDFIPTPKRDPDATPRM 209
Query: 297 AVEDVFSITGRGT--------VATGRVERGTIKVGETVDL-VGLKETRNF---------T 338
V F I GT V G + +G KVG+ +++ G+K T
Sbjct: 210 YVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTK 269
Query: 339 VTGVEMFQKTLDEAMAGDNVG---LLLRGVQKADIQRGMVLAKPGTITP-HTKFLAIVYV 394
+ + L +A G +G L + K+D G V+ PGT+ P K +
Sbjct: 270 IVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANL 329
Query: 395 LKKEEGGRH----SPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVE 450
L + G + P G + T G + GD ++
Sbjct: 330 LDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVI------------TSARGDIAD--IK 375
Query: 451 LIMPVACEQGMRFAI--REGGK--TVGAGVIQ 478
L +P+ E G R AI R G + +G G I+
Sbjct: 376 LKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 407
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 273 bits (699), Expect = 4e-87
Identities = 142/444 (31%), Positives = 217/444 (48%), Gaps = 60/444 (13%)
Query: 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDE---------------IDAA 126
+KPH+N+ IGHVDHGK+TL L M + K+ +E +D
Sbjct: 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRL 62
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-- 184
EER RG+TIN + +ET+ + +D PGH D+VKNMITGA+Q D AILVVS G
Sbjct: 63 KEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEY 122
Query: 185 -----PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD---DEELLQLVELEVRELLSSYEF 236
QT+EHI+LAK +G+ ++V +NK D + DE+ + + +V + + SY F
Sbjct: 123 EAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGF 182
Query: 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYE---LMDSVDSYIPIPQRQTDLP 293
+ V + A + + S W Y L + +D + +P + D P
Sbjct: 183 NTNKVRFVPVVAPSG--DNITHKSENMK---W----YNGPTLEEYLDQ-LELPPKPVDKP 232
Query: 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAM 353
+ ++DV+SI+G GTV GRVE G +KVG+ + + + V +E +D+A
Sbjct: 233 LRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKV--GEVRSIETHHTKMDKAE 290
Query: 354 AGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTK-FLAIVYVLKKEEGGRHSPFFAGYRP 412
GDN+G +RGV+K DI+RG V+ P F A + V+ + GY P
Sbjct: 291 PGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHP-----TALANGYTP 345
Query: 413 QFYMRTTDVTGRVSSIMNDKDEES--------KMVMPGDRIKMVVELIMPVACE------ 458
++ T V RVS +++ D + + + GD + + I P+ E
Sbjct: 346 VLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFP 405
Query: 459 QGMRFAIREGGKTVGAGVIQSIIE 482
RFA+R+ GKTVG G+I +
Sbjct: 406 PLGRFAMRDMGKTVGVGIIVDVKP 429
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 269 bits (691), Expect = 1e-85
Identities = 120/474 (25%), Positives = 195/474 (41%), Gaps = 65/474 (13%)
Query: 55 ATTTAVTVTTTRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGN 114
A A V K K HVNI IGHVD GK+TL + +
Sbjct: 13 AAEPATVTEDATDLQNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDK 72
Query: 115 SAPKKYDE---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 159
+K + +D+ EER +G T+ +ETE+R ++ +D PGH
Sbjct: 73 RTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHK 132
Query: 160 DYVKNMITGAAQMDGAILVVSGADG-------PMPQTKEHILLAKQVGVPNMVVFLNKQD 212
YV NMI GA+Q D +LV+S G QT+EH +LA+ G+ ++VV +NK D
Sbjct: 133 GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 192
Query: 213 QVD---DEELLQLVELEVRELLSSYEF--PGDDVPIISGSALLALEALMANPSIKRGENQ 267
+ EE + ++ L DV + SA S
Sbjct: 193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCP--- 249
Query: 268 WVDKIYE---LMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGE 324
W Y+ L++ +DS + +R+ + PF++ + + GT+ G++E G+IK
Sbjct: 250 W----YQGPSLLEYLDS-MTHLERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNS 302
Query: 325 TVDLVGLKETRNFTVTGV-EMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTIT 383
V ++ + +T VT + + + + ++ GD V L +RG D+Q G VL
Sbjct: 303 NVLVMPINQT--LEVTAIYDEADEEISSSICGDQVRLRVRGDDS-DVQTGYVLTSTKNPV 359
Query: 384 PHTK-FLAIVYVLKKEEGGRH-SPFFAGYRPQFYMRTTDVTGRVSSIMN--DK-----DE 434
T F+A + +L+ S GY ++ T + +++ DK +
Sbjct: 360 HATTRFIAQIAILE------LPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKK 413
Query: 435 ESKMVMPGDRIKMVVELIMPVACE------QGMRFAIREGGKTVGAGVIQSIIE 482
G +I +E PV E RF +R+ G TV G + I++
Sbjct: 414 PPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 467
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 272 bits (698), Expect = 4e-85
Identities = 107/519 (20%), Positives = 203/519 (39%), Gaps = 69/519 (13%)
Query: 6 SAAATVASTSPKLTHPYASASPSNSLLSTTALRTKLTPSNLSSSFLPPFATTTAVTVTTT 65
+ + + + ++ + SL + + +
Sbjct: 98 NKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQ 157
Query: 66 RRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDE--- 122
L+ + KP V++ GHVD GK+T+ + L + + + +K
Sbjct: 158 NPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAA 217
Query: 123 ------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAA 170
+D EERARG+T++ A+ +E++ + Y D PGH D++ MI GA+
Sbjct: 218 NSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGAS 277
Query: 171 QMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQL 222
D A+LVV + QT+EH L + +G+ +VV +NK D + E+ Q
Sbjct: 278 SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE 337
Query: 223 VELEVRE-LLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYE------- 274
++ V + L+ F +V + SA+ G N + K
Sbjct: 338 IKNIVSDFLIKMVGFKTSNVHFVPISAI-------------SGTNL-IQKDSSDLYKWYK 383
Query: 275 ---LMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGL 331
L+ ++D + P++ P L+++DV+ TV TGRVE G ++V + + V
Sbjct: 384 GPTLLSALDQ-LVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSS 441
Query: 332 KETRNFTVTGVEMF-QKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT-ITPHTKFL 389
+E V V + A+AGD V L L ++ ++ G +L+ + F+
Sbjct: 442 QED--AYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRVRSFV 499
Query: 390 AIVYVLKKEEGGRH-SPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMV 448
A + P +G ++ T + + I+ ++ S+ + R +
Sbjct: 500 AEIQTFD------IHGPILSGSTLVLHLGRTVTSVSL-KIVTVNNKRSRHIASRKRALVR 552
Query: 449 VELIMPVAC-------EQGMRFAIREGGKTVGAGVIQSI 480
+ + + RF +R G TV AG+++ +
Sbjct: 553 ISFLDGLFPLCLAEECPALGRFILRRSGDTVAAGIVKEL 591
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 272 bits (698), Expect = 4e-85
Identities = 116/538 (21%), Positives = 211/538 (39%), Gaps = 69/538 (12%)
Query: 2 AISASAAATVASTSPKLTHPYASASPSNSLLSTTALRTKLTPSNLSSSFLPPFATTTAVT 61
A+A + T + P++ L N + T
Sbjct: 86 KPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKT 145
Query: 62 VTTTRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYD 121
T+ + +A K PH++ +GHVD GK+TL L L + S +K
Sbjct: 146 TVPTKPKKPHDISAFVK--SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQ 203
Query: 122 E---------------IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMI 166
+D EER RG+T++ T + T ++ VD PGH D+V N I
Sbjct: 204 RESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAI 263
Query: 167 TGAAQMDGAILVVSGADGPM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEE 218
G +Q D AIL V + QTKEH+LLA +G+ N+++ +NK D VD ++
Sbjct: 264 MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323
Query: 219 LLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVD--KIYELM 276
+ ++ ++ L F D++ + S + QW + + +
Sbjct: 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSG--EGVYKIEYTDEVRQWYNGPNLMSTL 381
Query: 277 DSVDSYIPI--PQRQTDLPFLLAVEDVFS---ITGRGTVATGRVERGTIKVGETVDLVGL 331
++ I D PFL +V ++ + + +G++E G+I+ GE++ +
Sbjct: 382 ENAAFKISKENEGINKDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPS 441
Query: 332 KETRNFTVTGVEMFQ--------KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTIT 383
+++ V +++ + D A+ GD V L LR DIQ G + A +
Sbjct: 442 EQS--CIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSS 499
Query: 384 PH--TKFLAIVYVLKKEEGGRH-SPFFAGYRPQFYMRTTDVTGRVSSIMN--DKD----- 433
H F+ + P G ++ + R+ +++ DK
Sbjct: 500 IHSAQCFVLELTTFD------MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASK 553
Query: 434 EESKMVMPGDRIKMVVELI-----MPV----ACEQGMRFAIREGGKTVGAGVIQSIIE 482
++ + + R + +ELI +P+ ++ R +R+ G+T+ AG I I +
Sbjct: 554 KKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 611
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 267 bits (685), Expect = 2e-84
Identities = 105/460 (22%), Positives = 192/460 (41%), Gaps = 67/460 (14%)
Query: 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDE---------------ID 124
+ PH++ +GHVD GK+TL L L + S +K +D
Sbjct: 28 KSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMD 87
Query: 125 AAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 184
EER RG+T++ T + T ++ VD PGH D+V N I G +Q D AIL V +
Sbjct: 88 QTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147
Query: 185 PM-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQLVELEVRELLSSYEF 236
QTKEH+LLA +G+ N+++ +NK D VD ++ + ++ ++ L F
Sbjct: 148 AFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 207
Query: 237 PGDDVPIISGSALLALEALMANPSIKRGENQWVD--KIYELMDSVD--SYIPIPQRQTDL 292
D++ + S + QW + + +++ D
Sbjct: 208 FEDNINWVPISGFSGEG--VYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDD 265
Query: 293 PFLLAVEDVFS---ITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ--- 346
PFL +V ++ + + +G++E G+I+ GE++ + +++ V +++
Sbjct: 266 PFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQS--CIVDKIQVGSQQG 323
Query: 347 -----KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPH--TKFLAIVYVLKKEE 399
+ D A+ GD V L LR DIQ G + A + H F+ +
Sbjct: 324 QSTNHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--- 380
Query: 400 GGRH-SPFFAGYRPQFYMRTTDVTGRVSSIMN--DKD-----EESKMVMPGDRIKMVVEL 451
P G ++ + R+ +++ DK ++ + + R + +EL
Sbjct: 381 ---MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIEL 437
Query: 452 I-----MPV----ACEQGMRFAIREGGKTVGAGVIQSIIE 482
I +P+ ++ R +R+ G+T+ AG I I +
Sbjct: 438 IEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 259 bits (664), Expect = 1e-81
Identities = 138/447 (30%), Positives = 201/447 (44%), Gaps = 53/447 (11%)
Query: 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDE---------------IDA 125
++K H+N+ IGHVD GK+T T L + +K+++ +D
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 62
Query: 126 APEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG- 184
ER RGITI+ A ++ET +D PGH D++KNMITG +Q D AIL+++G G
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 185 ------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQLVELEVRELLSSYEFP 237
QT+EH LLA +GV ++V +NK D V DE Q + E + +
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182
Query: 238 GDDVPIISGSALLA---LEALMANPSIKRGENQWVDKIYE---LMDSVDSYIPIPQRQTD 291
VP + S +EA P K E + + + L++++D+ I P R TD
Sbjct: 183 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPTD 241
Query: 292 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDE 351
P L ++DV+ I G GTV GRVE G IK G V T V VEM + L++
Sbjct: 242 KPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTT--EVKSVEMHHEQLEQ 299
Query: 352 AMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPH--TKFLAIVYVLKKEEGGRHSPFFAG 409
+ GDNVG ++ V +I+RG V P F A V VL AG
Sbjct: 300 GVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHP-----GQISAG 354
Query: 410 YRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMVVELIMPVACE--- 458
Y P T + R ++ D + K + GD + P+ E
Sbjct: 355 YSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFS 414
Query: 459 ---QGMRFAIREGGKTVGAGVIQSIIE 482
RFA+R+ +TV GVI+S+ +
Sbjct: 415 EYPPLGRFAVRDMRQTVAVGVIKSVDK 441
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 169 bits (431), Expect = 8e-48
Identities = 106/445 (23%), Positives = 183/445 (41%), Gaps = 78/445 (17%)
Query: 82 KKPHVNIGTIGHVDHGKTTL-------TAALT----MALASLGNSAPKKYDEIDAA---- 126
+K + T G+VD GK+TL + + A+ + D++D A
Sbjct: 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVD 80
Query: 127 --PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 184
ER +GITI+ A + T R + D PGH Y +NM TGA+ D AI++V G
Sbjct: 81 GLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 140
Query: 185 PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQLVELEVRELLSSYEFPGDDVPI 243
QT+ H +A +G+ ++VV +NK D DE + + ++ + + F +
Sbjct: 141 VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 200
Query: 244 ISGSALLALEALMANPSIKRGEN--------QWVDKIYE---LMDSVDSYIPIPQRQTDL 292
+ SAL +G+N W Y LM+ +++ + I +
Sbjct: 201 VPMSAL-------------KGDNVVNKSERSPW----YAGQSLMEILET-VEIASDRNYT 242
Query: 293 PFLLAVEDV--FSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLD 350
V+ V ++ RG A G + G + G+ + V L ++ V + F+ L+
Sbjct: 243 DLRFPVQYVNRPNLNFRG-FA-GTLASGIVHKGDEI--VVLPSGKSSRVKSIVTFEGELE 298
Query: 351 EAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTK-FLAIVYVLKKEEGGRHSPFFAG 409
+A G V L + + DI RG +L + + F A++ + +E P G
Sbjct: 299 QAGPGQAVTLTME--DEIDISRGDLLVHADNVPQVSDAFDAMLVWMAEE------PMLPG 350
Query: 410 YRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKM------VVELIMPVACEQ---- 459
+ T+ V G ++SI + D + P +++ V L P+A +
Sbjct: 351 KKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSN 410
Query: 460 ---GMRFAI--REGGKTVGAGVIQS 479
G F + R TV AG+I +
Sbjct: 411 RTTG-AFIVIDRLTNGTVAAGMIIA 434
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A;
translation termination, peptide release, PTC, P
biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo
sapiens}
Length = 204
Score = 115 bits (290), Expect = 4e-30
Identities = 41/210 (19%), Positives = 82/210 (39%), Gaps = 28/210 (13%)
Query: 290 TDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTL 349
P L + D + GTV G++E G+I G+ + ++ K V G+
Sbjct: 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHN--VEVLGILSDDVET 58
Query: 350 DEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTK-FLAIVYVLKKEEGGRH-SPFF 407
D G+N+ + L+G+++ +I G +L P + + F A + +++ H S
Sbjct: 59 DTVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE------HKSIIC 112
Query: 408 AGYRPQFYMRTTDVTGRVSSIMNDKD--------EESKMVMPGDRIKMVVELIMPVACEQ 459
GY ++ T +++++ D + V + + E
Sbjct: 113 PGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLET 172
Query: 460 -------GMRFAIREGGKTVGAGVIQSIIE 482
G RF +R+ GKT+ G + ++
Sbjct: 173 FKDFPQMG-RFTLRDEGKTIAIGKVLKLVP 201
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function,
protein structure INI secsg, conserved hypothetical
protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP:
b.43.3.1
Length = 116
Score = 107 bits (270), Expect = 2e-28
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 286 PQRQTDLPFL-LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEM 344
+ + P + VE+V +I G+ + G VE G I VG V + + +E
Sbjct: 26 IEILSKKPAGKVVVEEVVNIMGKDVII-GTVESGMIGVGFKVK----GPSGIGGIVRIER 80
Query: 345 FQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLA 377
++ ++ A+AGD +G+ + G + +++G VL
Sbjct: 81 NREKVEFAIAGDRIGISIEG-KIGKVKKGDVLE 112
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 92.4 bits (229), Expect = 5e-20
Identities = 47/185 (25%), Positives = 77/185 (41%), Gaps = 28/185 (15%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITI---------- 136
N+ I HVDHGK+TLT +L + + + D +E+ RGITI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 137 ----NTATVEYETENRHYA--HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK 190
+ ++ +T+ + +D PGH D+ + DGA++VV +G QT+
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
Query: 191 EHILLAKQVGVPNMVVFLNKQD------QVDDEE----LLQLVELEVRELLSSYEFPGDD 240
+ A + VV +NK D QV E+ + VE V ++S+Y
Sbjct: 141 TVLRQALGERIK-PVVVINKVDRALLELQVSKEDLYQTFARTVE-SVNVIVSTYADEVLG 198
Query: 241 VPIIS 245
+
Sbjct: 199 DVQVY 203
Score = 33.8 bits (77), Expect = 0.13
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 18/177 (10%)
Query: 202 PNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLA-----LEALM 256
P +F + DE + L +LE+ + G + + L LE ++
Sbjct: 280 PIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIV 339
Query: 257 AN-PSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRG-TVATGR 314
+ PS + +++YE + I I +L V + + +G A GR
Sbjct: 340 LHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGR 399
Query: 315 VERGTIKVGETVDLVGLK-------ETRNFTVTGVEMF----QKTLDEAMAGDNVGL 360
V GT+K G+ V + G + + V + + +D+ AG+ +GL
Sbjct: 400 VFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL 456
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 71.1 bits (175), Expect = 1e-14
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 92 GHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYA 151
GHVDHGKTTL A+ + + A GIT + + ++
Sbjct: 15 GHVDHGKTTLLDAIRHSKVTEQ----------------EAGGITQHIGAYQVTVNDKKIT 58
Query: 152 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 211
+D PGH + GA D ILVV+ DG MPQT E I AK VP ++V +NK
Sbjct: 59 FLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKM 117
Query: 212 DQVD---DEELLQLVELEV 227
D+ + D + +L+E +
Sbjct: 118 DKPEANPDRVMQELMEYNL 136
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 75.2 bits (186), Expect = 1e-14
Identities = 83/258 (32%), Positives = 105/258 (40%), Gaps = 69/258 (26%)
Query: 90 TI-GHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT--INTATVEYETE 146
TI GHVDHGKT+L + A E A GIT I VE TE
Sbjct: 8 TIMGHVDHGKTSLLEYIRST---------------KVASGE-AGGITQHIGAYHVE--TE 49
Query: 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVV 206
N +D PGHA + GA D +LVV+ DG MPQT E I AK VP +VV
Sbjct: 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVV 108
Query: 207 FLNKQDQVD-DEELLQLVELEVRELLSSYE-FP---GDDVPIISGSALLALEALMANPSI 261
+NK D+ + D + V+ LS Y P G + + SA
Sbjct: 109 AVNKIDKPEADPD-------RVKNELSQYGILPEEWGGESQFVHVSA------------- 148
Query: 262 KRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSI---------TGRGTVAT 312
K G I EL+D++ Q ++ L AV + GRG VAT
Sbjct: 149 KAGTG-----IDELLDAI-------LLQAEVLELKAVRKGMASGAVIESFLDKGRGPVAT 196
Query: 313 GRVERGTIKVGETVDLVG 330
V GT+ G+ V L G
Sbjct: 197 VLVREGTLHKGDIV-LCG 213
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 74.2 bits (183), Expect = 3e-14
Identities = 75/265 (28%), Positives = 97/265 (36%), Gaps = 89/265 (33%)
Query: 90 TI-GHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT--INTATVEYETE 146
TI GHVDHGKTTL L L + AA E A GIT I V
Sbjct: 8 TIMGHVDHGKTTL-------LDKLRKTQV-------AAME--AGGITQHIGAFLVSLP-S 50
Query: 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVV 206
+D PGHA + G D ILVV+ DG M QT E I AK VP +V+
Sbjct: 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVL 109
Query: 207 FLNKQDQVD------DEELLQLVELEVRELLSSYEFPGDDVPIISGSAL----------- 249
+NK D+ + +ELL ++ + G DV + SAL
Sbjct: 110 AINKCDKAEADPEKVKKELLAY-DVVCEDY-------GGDVQAVHVSALTGENMMALAEA 161
Query: 250 LALEA----LMANPSIK-RG---ENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDV 301
A L A+P+ G E+ DK
Sbjct: 162 TIALAEMLELKADPTGAVEGTVIESF-TDK------------------------------ 190
Query: 302 FSITGRGTVATGRVERGTIKVGETV 326
GRG V T ++RGT++ G +
Sbjct: 191 ----GRGPVTTAIIQRGTLRKGSIL 211
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 68.3 bits (168), Expect = 2e-12
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEID--AA-----PEERARGITINTA 139
+ +GH GKTTLT AL L G ++ ++ PE + T+ T
Sbjct: 11 TVALVGHAGSGKTTLTEAL---LYKTGAK--ERRGRVEEGTTTTDYTPEAKLHRTTVRTG 65
Query: 140 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV 199
+D PG+ D+V + D A++ VS G T+ +A+++
Sbjct: 66 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL 125
Query: 200 GVPNMVVFLNKQD 212
G+P M V + K D
Sbjct: 126 GLPRM-VVVTKLD 137
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 67.3 bits (165), Expect = 4e-12
Identities = 67/296 (22%), Positives = 93/296 (31%), Gaps = 104/296 (35%)
Query: 92 GHVDHGKTTLTAALTMALASLGNSAPKKYDEID----AAPEERARGIT--INTATVEYET 145
GHVDHGKTTL L D I A+ E A GIT I + +
Sbjct: 12 GHVDHGKTTL----------L--------DHIRGSAVASRE--AGGITQHIGATEIPMDV 51
Query: 146 ENRHYAHV----------------DCPGHADYVKNMIT-GAAQMDGAILVVSGADGPMPQ 188
D PGH + + G A D AIL+V +G PQ
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT-TLRKRGGALADLAILIVDINEGFKPQ 110
Query: 189 TKEHILLAKQVGVPNMVVFLNK---------------------QDQVDDEEL-------- 219
T+E + + + P VV NK QD ++L
Sbjct: 111 TQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV 169
Query: 220 LQLVELEVR-ELLSSYEFPGDDVPIISGSA--------LLALEALMANPSIKRGENQWVD 270
+L E E V II SA LL + +A ++
Sbjct: 170 GKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE------- 222
Query: 271 KIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETV 326
+L DS P R T + +V TG G + G ++ +T+
Sbjct: 223 ---QLKIEEDS----PARGT-------ILEVKEETGLGMTIDAVIYDGILRKDDTI 264
Score = 34.9 bits (81), Expect = 0.064
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 22/117 (18%)
Query: 272 IYELMDSVDSYI------PIPQRQTDLPFLLAVEDVFSITGR---GTVATGRVERGTIKV 322
IY LM+ + ++ + + ++ + + R + V G I+
Sbjct: 434 IYRLMEEYEEWVRGIEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQ 493
Query: 323 GETV-----DLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKA-DIQRG 373
G + + VG TV ++ + L A G V + ++ I G
Sbjct: 494 GYPLMNDDGETVG-------TVESMQDKGENLKSASRGQKVAMAIKDAVYGKTIHEG 543
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 64.8 bits (159), Expect = 3e-11
Identities = 74/303 (24%), Positives = 121/303 (39%), Gaps = 78/303 (25%)
Query: 91 IGHVDHGKTTL-------TAALT---MALASLGNSAPKKYDEIDAAPEERARGITI--NT 138
I H+DHGK+TL L+ M L D +D ER RGITI +
Sbjct: 10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVL--------DSMDL---ERERGITIKAQS 58
Query: 139 ATVEYETEN-RHYA--HVDCPGHADY---VKNMITGAAQMDGAILVVSGADGPMPQTKEH 192
T++Y+ + Y +D PGH D+ V + A +GA+LVV G QT +
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSL---AACEGALLVVDAGQGVEAQTLAN 115
Query: 193 ILLAKQVGVPNMVVFLNKQD--QVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALL 250
A ++ + + V LNK D D E V E+ +++ D S
Sbjct: 116 CYTAMEMDLEVVPV-LNKIDLPAADPER----VAEEIEDIVG---IDATDAVRCSA---- 163
Query: 251 ALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLA-----VEDVFSIT 305
K G + ++++ + IP P+ + P L A D +
Sbjct: 164 -----------KTGVG-----VQDVLERLVRDIPPPEGDPEGP-LQALIIDSWFDNY--- 203
Query: 306 GRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF---QKTLDEAMAGDNVGLLL 362
G V+ R++ GT++ G+ V ++ +T + + +F Q E G+ VG L+
Sbjct: 204 -LGVVSLIRIKNGTLRKGDKVKVMSTGQT--YNADRLGIFTPKQVDRTELKCGE-VGWLV 259
Query: 363 RGV 365
+
Sbjct: 260 CAI 262
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 64.4 bits (158), Expect = 3e-11
Identities = 73/302 (24%), Positives = 123/302 (40%), Gaps = 76/302 (25%)
Query: 91 IGHVDHGKTTL-------TAALT---MALASLGNSAPKKYDEIDAAPEERARGITI--NT 138
I HVDHGK+TL T A++ L D +D ER RGIT+
Sbjct: 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLL--------DTLDV---ERERGITVKMQA 60
Query: 139 ATVEYETEN-RHYA--HVDCPGHADY---VKNMITGAAQMDGAILVVSGADGPMPQTKEH 192
+ Y+ ++ Y +D PGH D+ V + A +GA+L++ + G QT +
Sbjct: 61 VRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRAL---AACEGALLLIDASQGIEAQTVAN 117
Query: 193 ILLAKQVGVPNMVVFLNKQD--QVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALL 250
A + + + V +NK D D + V+ ++ E+L ++ + S
Sbjct: 118 FWKAVEQDLVIIPV-INKIDLPSADVDR----VKKQIEEVLG---LDPEEAILASA---- 165
Query: 251 ALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPF--LL--AVEDVFSITG 306
K G I E+++++ + IP P+ P L+ + D +
Sbjct: 166 -----------KEGIG-----IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPY---- 205
Query: 307 RGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF---QKTLDEAMAGDNVGLLLR 363
RG VA R+ G +K G+ + L+ + + VT V D+ AGD VG +
Sbjct: 206 RGAVAFVRIFDGEVKPGDKIMLMSTGKE--YEVTEVGAQTPKMTKFDKLSAGD-VGYIAA 262
Query: 364 GV 365
+
Sbjct: 263 SI 264
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 60.1 bits (146), Expect = 8e-10
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 91 IGHVDHGKTTLT-------AALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY 143
I H D GKTTLT A+ +A A ++ D E+ RGI++ T+ +++
Sbjct: 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKA-ARHATSDWMELEKQRGISVTTSVMQF 77
Query: 144 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN 203
++ +D PGHAD+ ++ +D A++V+ A G P+T + + + + P
Sbjct: 78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP- 136
Query: 204 MVVFLNKQD 212
++ F+NK D
Sbjct: 137 IMTFINKMD 145
Score = 28.5 bits (64), Expect = 5.2
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 18/105 (17%)
Query: 272 IYELMDSVDSYIPIPQ-RQTDLPFLLAVEDVFS-----------ITGRGTVATGRVERGT 319
+ EL+D+ P PQ R+T+ + E+ FS R +A R+ G
Sbjct: 264 VGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQ 323
Query: 320 IKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGL 360
+ G V LK + + F ++ +EA GD +GL
Sbjct: 324 YQKGMKAYHVRLK--KEIQINNALTFMAGKRENAEEAWPGDIIGL 366
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 9e-10
Identities = 65/479 (13%), Positives = 127/479 (26%), Gaps = 151/479 (31%)
Query: 18 LTHPYASAS--PSNSLLSTTALRTKLTPSNLSSSFLPPFATTTAVTVTTTRRRSLIVRAA 75
L P + PS R +L N F V+ R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------QVF---AKYNVS---RLQP-YLKL 140
Query: 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT 135
R +P N+ G + GKT + S ++ + + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALD---VCLS---------YKVQCKMDFKIFWLN 188
Query: 136 I---NTATVEYETENRHYAHVDCPGHA--DYVKNMITGAAQMDG-------------AIL 177
+ N+ E + +D + D+ N+ + +L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 178 V---VSGADGPMPQTKEHI----------LLAKQVGVPNMVVFLNKQDQVDDEELLQLVE 224
V V Q + L + V + + D + L
Sbjct: 249 VLLNV--------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 225 LEVRELLSSY-EFPGDDVPIISGSALLALEALMANP--------SIKRGENQW------- 268
EV+ LL Y + D+P E L NP SI+ G W
Sbjct: 301 DEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 269 VDKIYELMD-SVDSYIPIPQRQTDLPFL-LAV--EDVFSITGRGTVATGRVERGTIKV-- 322
DK+ +++ S++ P R+ F L+V + + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM---FDRLSVFPPSA------------HIPTILLSLIW 396
Query: 323 GETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNV-------GLLLRGVQKADIQRGMV 375
+ + + ++ + +L + + L K + + +
Sbjct: 397 FDVIK----SDVMVVV---NKLHKYSL---VEKQPKESTISIPSIYLELKVKLENEYAL- 445
Query: 376 LAKPGTITPHTKFLAIVYVLKK--EEGGRHSPFFAGYRPQFY------MRTTDVTGRVS 426
H + Y + K + P+ Y FY ++ + R++
Sbjct: 446 ---------HRSIVD-HYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMT 491
Score = 53.3 bits (127), Expect = 1e-07
Identities = 62/433 (14%), Positives = 129/433 (29%), Gaps = 172/433 (39%)
Query: 141 VEYETENRHYAH--------------VDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
+++ET Y + DC D K++++ ++D I++
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEID-HIIM-------S 57
Query: 187 PQTKEH------ILLAKQVGVPNMV-VFLNKQDQVDDEELLQLVELEVRE---LLSSYE- 235
LL+KQ MV F+ + +++ + L+ ++ E R+ + Y
Sbjct: 58 KDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 236 -----------FPGDDVPII--------------------------SGSALLALEALMAN 258
F +V + SG +AL+ ++
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 259 PSIKRGENQ--WVD---------------KIYELMDS-----VDSYIPIPQRQTDL---- 292
+ + + W++ K+ +D D I R +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 293 -------PF---LLAVEDV--------FSITGRGTVATGRVERGTIKVGETVDLVGLKET 334
P+ LL + +V F+++ + + T T
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILLT---------------------T 272
Query: 335 RNFTVT----GVEMFQKTLDEAMAG----DNVGLLLR--GVQKADIQRGMVLAKPGTITP 384
R VT +LD + LLL+ + D+ R ++ T P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-----TTNP 327
Query: 385 HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMN--DKDEESKM---- 438
L+I+ ++ + ++ + T + + S +N + E KM
Sbjct: 328 RR--LSIIAESIRDGLAT----WDNWKHVNCDKLTTI---IESSLNVLEPAEYRKMFDRL 378
Query: 439 -VMPGD-RIKMVV 449
V P I ++
Sbjct: 379 SVFPPSAHIPTIL 391
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 92/579 (15%), Positives = 165/579 (28%), Gaps = 205/579 (35%)
Query: 12 ASTSP-KLTHPYASAS---PSNSLLSTTALRTKLT---------------PS---NLSSS 49
ST P L+H P+ S + L+ + P+ L
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 50 FLPPFATTTAVTVTTTRRRSLIVRAARGKFER-----KKPHVNIGTIGHVDHGKTTLTAA 104
FL + ++ V + + ++ +FE H + + TTL
Sbjct: 64 FLG-Y-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL--LQENDTTLVKT 119
Query: 105 LTM------ALASLGNSAPKKYDE--IDAAPEERARGITI-----NTATV--E----YET 145
+ A KK + A E A+ + I NT E Y+T
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMV 205
Y V ++I +A+ L+ + D T+ G+ N++
Sbjct: 180 ----YHV--------LVGDLIKFSAETLSE-LIRTTLDAEKVFTQ---------GL-NIL 216
Query: 206 VFLNKQDQVDDEE-------------LLQLVELEVRELLSSYEFPGDDVPIISGS----- 247
+L D++ ++QL V L + PG+ + G+
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQ 275
Query: 248 ALLALEALMANPSIKRGENQW------VDKIYELMDSVDSYI--------PIPQRQTDLP 293
L+ A+ S W V K ++ +I P T LP
Sbjct: 276 GLVTAVAIAETDS-------WESFFVSVRKAITVL----FFIGVRCYEAYP----NTSLP 320
Query: 294 FLLAVEDV----------FSITG--RGTVATGRVER--GTIKVGETVDLVGLKET-RNFT 338
+ + + SI+ + V V + + G+ V+ + L +N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQD-YVNKTNSHLPAGKQVE-ISLVNGAKNLV 378
Query: 339 VTGVEMFQKTLDEAMAGDNVGL--LLRGVQKADI----------QRGMVLAKPGTITPHT 386
V+G ++L GL LR KA +R K
Sbjct: 379 VSG---PPQSL--------YGLNLTLRKA-KAPSGLDQSRIPFSER-----KL---KFSN 418
Query: 387 KFLAIV--YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDR 444
+FL + + HS + I D + + D
Sbjct: 419 RFLPVASPF---------HSH---------LLVPA-----SDLINKDLVKNNVSFNAKD- 454
Query: 445 IKMVVELIMPVAC-EQGMRFAIREGGKTVGAGVIQSIIE 482
+ +PV G +R ++ ++ II
Sbjct: 455 ------IQIPVYDTFDGSD--LRVLSGSISERIVDCIIR 485
Score = 41.6 bits (97), Expect = 6e-04
Identities = 38/213 (17%), Positives = 59/213 (27%), Gaps = 89/213 (41%)
Query: 211 QDQVDDEELLQLVELEVRELLSSYEFPGDDV---------PIISGSALLALEALMANPSI 261
+ VD + + + E+ E +SY F + P AL +E A
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-----ALTLME--KA---- 1742
Query: 262 KRGENQWVDKIYELMDSVDSYIPIPQRQTDLPF----------LLAVEDVFSITGRGTVA 311
+E + S IP D F L ++ DV SI
Sbjct: 1743 ----------AFEDLKS-KGLIP-----ADATFAGHSLGEYAALASLADVMSIE------ 1780
Query: 312 TGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQ 371
V++V R G T+ A+ D +G
Sbjct: 1781 ------------SLVEVV---FYR-----G-----MTMQVAVPRDELG---------RSN 1806
Query: 372 RGMVLAKPGTITP---HTKFLAIVYVLKKEEGG 401
GM+ PG + +V + K G
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Score = 40.4 bits (94), Expect = 0.001
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 41/146 (28%)
Query: 108 ALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDC-PG------HAD 160
ALASL + + RG+T+ A E +Y + PG +
Sbjct: 1769 ALASLADVMSIE----SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 161 YVKNMITGAAQMDGAIL------------VVSGADGPMPQTKEHILLAKQVGVPNMVVFL 208
++ ++ + G ++ V +G + + L
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG---------------DLRALDTVTNVL 1869
Query: 209 N--KQDQVDDEELLQLVELE-VRELL 231
N K ++D EL + + LE V L
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 38.1 bits (88), Expect = 0.007
Identities = 53/318 (16%), Positives = 104/318 (32%), Gaps = 114/318 (35%)
Query: 74 AARGKFERKKPHV------NIGTIGHVDHGKTTLT---------------AALTMALASL 112
AA+ + R H +I I V + LT +A+
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDI--VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 113 GNSAPKK-YDEIDAAPEERARGITINTATVE-YETENRHYAHVDCPGHADYVKNMITGAA 170
G +K + EI+ E + T + T+
Sbjct: 1699 GKLKTEKIFKEIN----EHSTSYTFRSEKGLLSATQF----------------------T 1732
Query: 171 QMDGAILVVSGA-------DGPMPQTKE---HIL-----LAKQVGVPNMVVFLNKQDQVD 215
Q A+ ++ A G +P H L LA V +
Sbjct: 1733 QP--ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV------------MS 1778
Query: 216 DEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPS-IKRGENQWVDKIYE 274
E L+++V R + P D++ S ++A+ NP + +Q + +
Sbjct: 1779 IESLVEVVFY--RGMTMQVAVPRDELG-RSNYGMIAI-----NPGRVAASFSQ--EALQY 1828
Query: 275 LMDSVDSYIPIPQRQTDLPFLLAVEDV-FSITGRGTVATGR---VERGT-----IKVGET 325
+++ V ++T VE V +++ + VA G ++ T IK+ +
Sbjct: 1829 VVERV-------GKRTGWL----VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL-QK 1876
Query: 326 VDLVGLKETRNFTVTGVE 343
+D++ L+++ ++ VE
Sbjct: 1877 IDIIELQKS--LSLEEVE 1892
Score = 30.8 bits (69), Expect = 1.4
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 63/135 (46%)
Query: 386 TKF---------LAIVYVLKKEEGGRHSP-FFAG-------------------------- 409
T+F A L K +G + FAG
Sbjct: 1729 TQFTQPALTLMEKAAFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 410 YRPQFYMRTTDVTGRVSSIMNDKDEESK----M--VMPGDRIKMVVELIMPVACEQGMRF 463
YR G + +DE + M + PG ++ ++ +++
Sbjct: 1788 YR-----------GMTMQVAVPRDELGRSNYGMIAINPG---RVAASF-----SQEALQY 1828
Query: 464 AIREGGKTVGAGVIQ 478
+ GK G +++
Sbjct: 1829 VVERVGKRTG-WLVE 1842
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 57.4 bits (139), Expect = 5e-09
Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 91 IGHVDHGKTTLT-------AALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY 143
I H D GKTT+T A+ A G + ++ + D E+ RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGS-NQHAKSDWMEMEKQRGISITTSVMQF 77
Query: 144 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN 203
+ +D PGH D+ ++ +D ++V+ A G +T++ + + + P
Sbjct: 78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP- 136
Query: 204 MVVFLNKQDQVDDEELLQLVELEVRELL 231
++ F+NK D+ D + ++L++ EV L
Sbjct: 137 ILTFMNKLDR-DIRDPMELLD-EVENEL 162
Score = 28.9 bits (65), Expect = 4.4
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 272 IYELMDSVDSYIPIPQ-RQTDLPFLLAVEDVFS-----------ITGRGTVATGRVERGT 319
+ ++D + + P P RQTD + A ED F+ R VA RV G
Sbjct: 265 VDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGK 324
Query: 320 IKVGETVDLVGLKETRNFTVTGVEMF----QKTLDEAMAGDNVGL 360
+ G + V ++ ++ F + ++EA GD +GL
Sbjct: 325 YEKGMKLRQVRTA--KDVVISDALTFMAGDRSHVEEAYPGDILGL 367
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 45.6 bits (109), Expect = 3e-05
Identities = 43/162 (26%), Positives = 61/162 (37%), Gaps = 60/162 (37%)
Query: 87 NIGTIGHVDHGKTTLT------------------AALTMALASLGNSAPKKYDEIDAAPE 128
NIG H+D GKTT T A TM D +
Sbjct: 12 NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATM----------------DWMEQ 55
Query: 129 ERARGITINTA--TVEYETENRHYAH-----VDCPGHADY---------VKNMITGAAQM 172
E+ RGITI +A T + + Y +D PGH D+ V +
Sbjct: 56 EQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRV---------L 106
Query: 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214
DGA++V G PQ++ A + VP + F+NK D++
Sbjct: 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRM 147
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 44.0 bits (104), Expect = 3e-05
Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 36/187 (19%)
Query: 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYD-EIDAAPEERARGITIN 137
F ++ + I G GKTT L + + P+ E+ + E R + +
Sbjct: 8 FANREINFKIVYYGPGLSGKTTN-------LKWIYSKVPEGRKGEMVSLATEDERTLFFD 60
Query: 138 TATVEYETENRHYAHV---DCPGHADYV---KNMITGAAQMDGAILVVSGADGPMPQTKE 191
++ PG Y K ++ G DG + V A + E
Sbjct: 61 FLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV---DGIVFVADSAPNRLRANAE 117
Query: 192 HILLAKQV---------GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242
+ ++ VP +V+ +NK+D D L VR ++ P P
Sbjct: 118 SMRNMRENLAEYGLTLDDVP-IVIQVNKRDLPD-----ALPVEMVRAVVD----PEGKFP 167
Query: 243 IISGSAL 249
++ A
Sbjct: 168 VLEAVAT 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 44.8 bits (107), Expect = 5e-05
Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 53/155 (34%)
Query: 87 NIGTIGHVDHGKTTLT------------------AALTMALASLGNSAPKKYDEIDAAPE 128
NIG H+D GKTT T A TM D +
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATM----------------DFMEQ 57
Query: 129 ERARGITINTATVEYETENRHYAHVDCPGHADY---------VKNMITGAAQMDGAILVV 179
ER RGITI A ++ +D PGH D+ V +DGAI+V
Sbjct: 58 ERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRV---------LDGAIVVF 108
Query: 180 SGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214
+ G PQ++ A++ VP + F NK D+
Sbjct: 109 DSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKT 142
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 44.8 bits (107), Expect = 5e-05
Identities = 44/155 (28%), Positives = 59/155 (38%), Gaps = 53/155 (34%)
Query: 87 NIGTIGHVDHGKTTLT------------------AALTMALASLGNSAPKKYDEIDAAPE 128
NIG + H+D GKTT T A M D +
Sbjct: 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQM----------------DWMEQ 55
Query: 129 ERARGITINTATVEYETENRHYAHVDCPGHADY---------VKNMITGAAQMDGAILVV 179
E+ RGITI +A E +D PGH D+ V +DGA+ V+
Sbjct: 56 EQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRV---------LDGAVTVL 106
Query: 180 SGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 214
G PQT+ A GVP + VF+NK D++
Sbjct: 107 DAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKL 140
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 37.3 bits (86), Expect = 0.009
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 134 ITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQM-----DGAILVVSGADGPMPQ 188
I + + + + N DC G +++N T I V + +
Sbjct: 39 IDVEHSHLRF-LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK 97
Query: 189 TKEH---ILLAKQVGVPNMV--VFLNKQDQVDD---EELLQLVELEVRELLSSYEFP 237
E L + P+ V L+K D V EEL Q++ + E S + FP
Sbjct: 98 DIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 36.8 bits (86), Expect = 0.011
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 163 KNMIT--GAAQMDGAILVVSGADGPMPQTKEHIL-----LAKQVGVPNMVVFLNKQDQVD 215
KN++ A +D I+V + P+ ++L + + V ++VF NK D ++
Sbjct: 69 KNLLIRPKVANVDRVIIVETLKM---PEFNNYLLDNMLVVYEYFKVEPVIVF-NKIDLLN 124
Query: 216 DEELLQLVELEVRELLSSYEFPGDDVPIIS---GSALLALEALMAN 258
+EE E+ +S Y G DV +S G + L +
Sbjct: 125 EEEK-----KELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 37.3 bits (85), Expect = 0.012
Identities = 31/246 (12%), Positives = 68/246 (27%), Gaps = 44/246 (17%)
Query: 29 NSLLSTTALRTKLTPSNLSSSFLPPFATTTAVTVTTTRRRSLIVRAARGKFERKKPHVNI 88
N+L+ L + + P T + + + + GK ++ N
Sbjct: 87 NALIGENLLPSDVNP-----------CTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNF 135
Query: 89 GTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENR 148
+D A + Y ++ +GI I + +TE R
Sbjct: 136 KYKYTIDPA-----EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEAR 190
Query: 149 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFL 208
+ + + + V+ + + ++ + + +
Sbjct: 191 N----------ELSLGYVNNC---HAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLV 237
Query: 209 NKQDQVDDEE---------------LLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253
N DQV + L Q+ + E + D + S++ AL
Sbjct: 238 NAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALR 297
Query: 254 ALMANP 259
+ NP
Sbjct: 298 RRLKNP 303
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 35.9 bits (83), Expect = 0.015
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 23/115 (20%)
Query: 137 NTATVEYETENRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVV-SGADGP-MP 187
+ +Y+ VD PGH DY+K G I +V S D +
Sbjct: 82 PLSAADYD--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFV---KGLIFMVDSTVDPKKLT 136
Query: 188 QTKEH---ILLAKQVGVPNMV---VFLNKQDQVD---DEELLQLVELEVRELLSS 233
T E IL + N + + NK + ++ +E E+++++
Sbjct: 137 TTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 191
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 35.9 bits (83), Expect = 0.017
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 35/161 (21%)
Query: 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT 140
RK + +G D GKT L L D IT ++A
Sbjct: 3 RKSSQRAVLFVGLCDSGKTLLFVRL------------LTGQYRDTQTS-----ITDSSAI 45
Query: 141 VEYETENRHYAHV-DCPGH----ADYVKNMITGAAQMDGAILVVSGADGP--MPQTKE-- 191
+ + + D PGH + + A + VV A + E
Sbjct: 46 YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA---RAVVFVVDSAAFQREVKDVAEFL 102
Query: 192 -HILLAKQV--GVPNMVVFLNKQDQVD---DEELLQLVELE 226
+L+ P++++ NKQD + + Q +E E
Sbjct: 103 YQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKE 143
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 36.0 bits (84), Expect = 0.019
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 163 KNMIT--GAAQMDGAILVVSGADGPMPQTKEHIL-----LAKQVGVPNMVVFLNKQDQVD 215
N + +D A+LV S P +L L + + ++ K D ++
Sbjct: 76 TNELIRPPICNVDQAVLVFSAVQ---PSFSTALLDRFLVLVEANDIQPIICI-TKMDLIE 131
Query: 216 DEELLQLVELEVRELLSSYEFPGDDVPIIS---GSALLALEALMAN 258
D++ ++ Y G DV + S +L + +
Sbjct: 132 DQDTED----TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD 173
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 36.2 bits (84), Expect = 0.019
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 33/121 (27%)
Query: 173 DGAILVVSGADGPMPQTKEHIL-LAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231
D ILV A P ++ ++ L K++ +P VV +NK D + ++ E L
Sbjct: 115 DCGILVTDSAPTP---YEDDVVNLFKEMEIP-FVVVVNKIDVLGEKA----------EEL 160
Query: 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTD 291
+ ++ SAL + + ++ ++ +P +
Sbjct: 161 KGLYESRYEAKVLLVSAL-------------QKKG-----FDDIGKTISEILPGDEEIPY 202
Query: 292 L 292
L
Sbjct: 203 L 203
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.1 bits (84), Expect = 0.023
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 169 AAQMDGAILVVSGADGPMPQTKEHIL-----LAKQVGVPNMVVFLNKQDQVDDEELLQLV 223
AA +D ++V + +P+ +I+ + + V ++V NK D +DDE +
Sbjct: 128 AANIDQIVIVSA----ILPELSLNIIDRYLVGCETLQVEPLIVL-NKIDLLDDEGM---- 178
Query: 224 ELEVRELLSSYEFPGDDVPIIS---GSALLALEALMAN 258
V E + Y G V ++S L LE +
Sbjct: 179 -DFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTG 215
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 35.5 bits (82), Expect = 0.025
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 23/115 (20%)
Query: 137 NTATVEYETENRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVV-SGADGP-MP 187
+ +Y+ VD PGH DY+K G I +V S D +
Sbjct: 46 PLSAADYD--GSGVTLVDFPGHVKLRYKLSDYLKTRAKFV---KGLIFMVDSTVDPKKLT 100
Query: 188 QTKEH---ILLAKQVGVPNMV---VFLNKQDQVD---DEELLQLVELEVRELLSS 233
T E IL + N + + NK + ++ +E E+++++
Sbjct: 101 TTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 35.8 bits (82), Expect = 0.028
Identities = 22/179 (12%), Positives = 41/179 (22%), Gaps = 28/179 (15%)
Query: 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145
+N+ G GK++ L G +E AA
Sbjct: 70 LNVAVTGETGSGKSSFINTL------RG----IGNEEEGAAKTGVVE--VTMERHPYKHP 117
Query: 146 ENRHYAHVDCPGHADY---VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
+ D PG + + ++ A + +
Sbjct: 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKE 177
Query: 203 NMVVFLNKQDQV------------DDEELLQLVELEVRELLSSYEFPGDDVPIISGSAL 249
V K D D E++LQ + L + ++S +
Sbjct: 178 FYFV-RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNV 235
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 34.6 bits (79), Expect = 0.038
Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 28/179 (15%)
Query: 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT 135
F+ KP + + +G GK+++ + +P + +++
Sbjct: 13 NLYFQGSKPRILL--MGLRRSGKSSIQKVV------FHKMSPNETLFLEST-------NK 57
Query: 136 INTATVEYETENRHYAHVDCPGHADYVKNMITGAA---QMDGAILVV-SGADGPMPQTKE 191
I + + ++ D PG D+ I V+ + D T+
Sbjct: 58 IYKDDISN-SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRL 116
Query: 192 H--ILLAKQVGVPNMV--VFLNKQDQVDDE---ELLQLVELEVRELLSSYEFPGDDVPI 243
H + A +V P+M VF++K D + D+ E + + + L+ +
Sbjct: 117 HITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.0 bits (79), Expect = 0.093
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 163 KNMIT--GAAQMDGAILVVSGADGPMPQTKEHIL-----LAKQVGVPNMVVFLNKQDQVD 215
KN++T A +D ILVV+ P+T +I+ LA++ + ++V NK D D
Sbjct: 74 KNLLTKPHVANVDQVILVVTVKM---PETSTYIIDKFLVLAEKNELETVMVI-NKMDLYD 129
Query: 216 DEELLQLVELEVRELLSSYEFPGDDVPIIS---GSALLALEALMAN 258
+++L +VREL Y + S G + L+ +
Sbjct: 130 EDDL-----RKVRELEEIYS-GLYPIVKTSAKTGMGIEELKEYLKG 169
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 33.2 bits (75), Expect = 0.15
Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 35/225 (15%)
Query: 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGIT 135
K +K + +G GK+TL +L + P++ A ER I
Sbjct: 9 HRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLY-----PERVISGAAEKIERTVQIE 63
Query: 136 INTATVEYETENRHYAHVDCPGHADYVKNMITGAA-------QMDG-------------- 174
+T +E VD PG+ D + Q +
Sbjct: 64 ASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHII 123
Query: 175 -----AILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRE 229
G + + + N+V + K D + +E +L + + E
Sbjct: 124 DNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDE 183
Query: 230 L----LSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVD 270
+ + Y P + + P G NQ ++
Sbjct: 184 IEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIE 228
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.15
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 11/34 (32%)
Query: 226 EVRELLSS---YEFPGDDVPIISGSALLALEALM 256
+++L +S Y D P A LA++A M
Sbjct: 21 ALKKLQASLKLYA-D-DSAP-----A-LAIKATM 46
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 32.2 bits (74), Expect = 0.30
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 166 ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQ 221
+ +DG I +V Q + + QVG + ++ L K D + E L
Sbjct: 117 LCQRYLLDGVIALVDAVHA-DEQMNQFTIAQSQVGYADRIL-LTKTDVAGEAEKLH 170
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 32.0 bits (73), Expect = 0.34
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 97 GKTTLTAALTMALASLG 113
GKTT+ A L +AS
Sbjct: 12 GKTTVAAGLIKIMASDY 28
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 32.3 bits (74), Expect = 0.34
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 20/84 (23%)
Query: 175 AILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSY 234
A L++ G DGP + L K + + + V+FL KQD V ELL + +L + LLS
Sbjct: 242 AKLLLVG-DGPE--FCTILQLVKNLHIEDRVLFLGKQDNV--AELLAMSDLML--LLSEK 294
Query: 235 E-FPGDDVPIISGSALLALEALMA 257
E F L+ LEA MA
Sbjct: 295 ESFG-----------LVLLEA-MA 306
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 31.6 bits (72), Expect = 0.37
Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 32/156 (20%)
Query: 97 GKTTLTAALTMALASLGN----------SAPKKYDEIDAAPEERARGITINTATVEYETE 146
GKTT L+ LA G SA + + + P + +Y+
Sbjct: 13 GKTTTAVHLSAYLALQGETLLIDGDPNRSA-TGWGKRGSLPFKVVDERQAAKYAPKYQ-- 69
Query: 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVV-----SGADGPMPQTKEHILLAKQVGV 201
+D A DG L+V + I +++G
Sbjct: 70 ---NIVIDTQARP----EDEDLEALADGCDLLVIPSTPDALA--LDALMLTIETLQKLGN 120
Query: 202 PNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237
+ L E R+LL++ P
Sbjct: 121 NRFRILLTIIPPYP-----SKDGDEARQLLTTAGLP 151
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 32.1 bits (72), Expect = 0.46
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 148 RHYAHVDCPGHADYVKNMITGAAQMDGA----------ILVVSGADGP-MPQTKEHILLA 196
+ +D PG K ++ I+++ A + + A
Sbjct: 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGA 213
Query: 197 KQVGVPNMVVFLNKQDQVDDEELLQLV 223
+ + V LNK D V+ ++L+++
Sbjct: 214 LRGHEDKIRVVLNKADMVETQQLMRVY 240
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 31.5 bits (71), Expect = 0.62
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 160 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL 219
D+++ + + +V D L + VG +++ NK D +
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPG---LHRFVGNNKVLLVGNKADLIPKSVK 114
Query: 220 LQLVELEVRELLSSYEFPGDDVPIISGSALLALEALM 256
V+ +R +DV +IS + + L
Sbjct: 115 HDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELA 151
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.9 bits (71), Expect = 0.75
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 29/113 (25%)
Query: 175 AILVVSGADGPMPQTKEHIL--LAKQVGVPNMVVFLNKQDQV-DDEELLQLVELEVRELL 231
IL + A E I K + P +VV +NK D++ + +L L++ E+ +
Sbjct: 95 VILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV-INKIDKIGPAKNVLPLID-EIHKKH 152
Query: 232 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284
+ VPI SAL +G N + EL+ ++ Y+P
Sbjct: 153 PELT---EIVPI---SAL-------------KGAN-----LDELVKTILKYLP 181
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.1 bits (71), Expect = 0.83
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 169 AAQMDGAILVVSGADGPMPQTKEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLQ 221
A D ILV+ E + + ++ G P +V NK D+++ + +
Sbjct: 255 AKYSDALILVIDSTF-SENLLIETLQSSFEILREIGVSGKPILVTL-NKIDKINGDLYKK 312
Query: 222 LVELEVRELLSSYEFPGDDVPIISGSA---------LLALEALMANPSIKR 263
L +E D +PI SA + L S++
Sbjct: 313 LDLVEKLSKELYSPIF-DVIPI---SALKRTNLELLRDKIYQLATQLSLEH 359
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 31.0 bits (71), Expect = 0.96
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 32/119 (26%)
Query: 204 MVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKR 263
+V LNK D +++E + L + + + ++ SAL
Sbjct: 272 SLVALNKVDLLEEEAVKALAD----------ALAREGLAVLPVSAL-----------TGA 310
Query: 264 GENQWVDKIYELMDSV---DSYIPIPQRQTDLPFLLAVED--VFSITGRGTVATGRVER 317
G + ++ L+ S + P+P+++ + V+ + VER
Sbjct: 311 GLPALKEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEVRAP------EVER 363
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 30.2 bits (69), Expect = 1.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 97 GKTTLTAALTMALASLG 113
GKTT+TA L++AL G
Sbjct: 15 GKTTVTANLSVALGDRG 31
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 30.2 bits (69), Expect = 1.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 97 GKTTLTAALTMALASLG 113
GKTT+TA L +ALA LG
Sbjct: 15 GKTTITANLGVALAQLG 31
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 29.5 bits (67), Expect = 1.4
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEV 227
DG I VV AD M + LL ++ G +++F NKQD L +
Sbjct: 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPG-----ALSCNAI 140
Query: 228 RELLSSYEFPGDDVPIISGSAL 249
+E L I SA+
Sbjct: 141 QEALELDSIRSHHWRIQGCSAV 162
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 29.5 bits (67), Expect = 1.5
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVDD------EELLQ 221
+ I+VV D + T+E + +LA + +++F NKQD + + L+
Sbjct: 90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLK 148
Query: 222 LVELEVR 228
L ++
Sbjct: 149 LTSIKDH 155
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLAKQ--VGVPNMVVFLNKQD 212
G I VV D + + +E +LA+ ++VF NKQD
Sbjct: 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQD 112
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 97 GKTTLTAALTMALASLG 113
GKTT +AA+ LA G
Sbjct: 15 GKTTSSAAIATGLAQKG 31
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 29.1 bits (66), Expect = 1.9
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVD----DE--ELLQ 221
+ I+VV D + T+E + +LA + +++F NKQD + E + L+
Sbjct: 85 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLK 143
Query: 222 LVELEVR 228
L ++
Sbjct: 144 LTSIKDH 150
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.1 bits (66), Expect = 1.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLAKQ--VGVPNMVVFLNKQD 212
D I VV D + +K +L ++ +VVF NKQD
Sbjct: 76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQD 119
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 29.1 bits (66), Expect = 2.2
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVD----DE--ELLQ 221
+ +V AD + +K H LL K G+P ++V NK+D E E +
Sbjct: 92 SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDEKELIEKMN 150
Query: 222 LVELEVRE 229
L ++ RE
Sbjct: 151 LSAIQDRE 158
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 29.1 bits (66), Expect = 2.2
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEV 227
I VV D M + H++L ++ ++VF NKQDQ L EV
Sbjct: 87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQPGA-----LSASEV 140
Query: 228 RELLSSYEFPGDDVPIISGSAL 249
+ L+ E I++ SA+
Sbjct: 141 SKELNLVELKDRSWSIVASSAI 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 29.3 bits (65), Expect = 2.3
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 29/166 (17%)
Query: 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTAT 140
+ + + +G GK+ ++ LG A +T T
Sbjct: 17 QGESTRRLILVGRTGAGKSATGNSI------LGQRR--------FFSRLGATSVTRACTT 62
Query: 141 VEYETENRHYAHVDCPG-------HADYVKNMITGAAQM----DGAILVVSGADGPMPQT 189
+ H VD P D + A+L+V+ Q
Sbjct: 63 GSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD 122
Query: 190 KEHILLAKQV----GVPNMVVFLNKQDQVDDEELLQLVELEVRELL 231
++ + + + + MV+ +++ + L V L
Sbjct: 123 QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRAL 168
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.8 bits (65), Expect = 2.6
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLAKQ--VGVPNMVVFLNKQD 212
D I VV D M K + LL + +++F NKQD
Sbjct: 91 DAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQD 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 29.4 bits (66), Expect = 2.6
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 46/192 (23%)
Query: 77 GKFERKKPHVN-----IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA 131
+ + P V+ + GH + GK+TL ALT A PE +
Sbjct: 154 REVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALT-----------------TAKPEIAS 196
Query: 132 RGITINTATV-EYETENRHYAHVDCPG---HADYVKNMITGAA-----QMDGAILVV--- 179
T V ++E Y +D PG +N I A + I+ +
Sbjct: 197 YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDP 256
Query: 180 SGADGPMPQTKEHIL--LAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFP 237
S G + + H+ + + +V +NK D D+E + +L +
Sbjct: 257 SEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEK----------FVK 306
Query: 238 GDDVPIISGSAL 249
+ I SAL
Sbjct: 307 EKGLNPIKISAL 318
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 28.7 bits (65), Expect = 2.8
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVDDEELLQLVELEV 227
D I V+ AD +T + LL ++ VP +++F NKQD + E+
Sbjct: 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLT-----AAPASEI 138
Query: 228 RELLSSYEFPGDDVPIISGSAL 249
E L+ + I S SAL
Sbjct: 139 AEGLNLHTIRDRVWQIQSCSAL 160
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 29.0 bits (65), Expect = 3.1
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 29/160 (18%)
Query: 144 ETENRHYAHVDCPG---HADYVKNMITGAAQ-----MDGAILVV---SGADG--PMPQTK 190
+ + Y +D PG A +N I ++G IL + S G Q
Sbjct: 72 DHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQIN 131
Query: 191 EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSAL- 249
+ ++V+ NK D+ + + L +L ++++L + + + S S L
Sbjct: 132 LFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQIL---DNVKNPIKFSSFSTLT 188
Query: 250 ---------LALEALMANP--SIKRGENQWVD-KIYELMD 277
A E L + SI + Q ++ K+ E +
Sbjct: 189 GVGVEQAKITACELLKNDQAESILLDQEQLLNTKLGETKN 228
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.9 bits (64), Expect = 3.5
Identities = 27/196 (13%), Positives = 48/196 (24%), Gaps = 45/196 (22%)
Query: 72 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYD---------- 121
+R + + + +G GKTTLT L A D
Sbjct: 1 MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEP 60
Query: 122 EIDAAP--------EERARGITINTATVEYETEN--------------RHYAHVDCPG-- 157
ID E + + E Y +D PG
Sbjct: 61 SIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQM 120
Query: 158 ----HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK-----QVGVPNMVVFL 208
++ + + + P + ++G + L
Sbjct: 121 ETFLFHEFGVR-LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT-TIPAL 178
Query: 209 NKQDQVDDEELLQLVE 224
NK D + +EE + +
Sbjct: 179 NKVDLLSEEEKERHRK 194
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 29.2 bits (66), Expect = 3.8
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 176 ILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQL 222
+++ G GP + +A+++GV + FL D EL+ +
Sbjct: 279 VIICGGPSGPNATPDTYRHMAEELGVEKRIRFL---DPRPPSELVAV 322
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 28.7 bits (64), Expect = 3.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLA--KQVGVPNMVVFLNKQD 212
G I VV D + + +E +LA + ++VF NKQD
Sbjct: 234 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQD 277
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 28.4 bits (64), Expect = 4.6
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAS 111
R + +G + GKT L + +
Sbjct: 22 REALRESGTVA-VNIMGAIGSGKTLLIERTIERIGN 56
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.6 bits (65), Expect = 5.0
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 29/96 (30%)
Query: 191 EHIL-LAKQVGVPNMVVFLNKQDQVDD-EELLQLVELEVRELLSSYEFPGDDVPIISGSA 248
E +L ++ P ++ +NK D V + +LL ++ L S F D VPI SA
Sbjct: 106 EMVLNKLREGKAPVILA-VNKVDNVQEKADLLPHLQ----FLASQMNF-LDIVPI---SA 156
Query: 249 LLALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284
G N + + V ++P
Sbjct: 157 E-------------TGLN-----VDTIAAIVRKHLP 174
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 28.0 bits (63), Expect = 5.7
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 97 GKTTLTAALTMALASLGNS 115
G + + A AL+ +
Sbjct: 17 GGSCIAANFAFALSQEPDI 35
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 28.3 bits (63), Expect = 5.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLAKQ--VGVPNMVVFLNKQDQVD----DE--ELLQ 221
G I VV AD + + ++ H ++ + +++F NKQD D E E L
Sbjct: 391 QGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDAMKPHEIQEKLG 449
Query: 222 LVELEVR 228
L + R
Sbjct: 450 LTRIRDR 456
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.0 bits (63), Expect = 6.0
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 76 RGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAS 111
R + +G + GKT L L L
Sbjct: 30 RKLLNKHGVVA-FDFMGAIGSGKTLLIEKLIDNLKD 64
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.6 bits (62), Expect = 6.8
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 173 DGAILVVSGAD-GPMPQTKE--HILLAKQ--VGVPNMVVFLNKQD 212
G I VV D + ++ + +L + ++VF NKQD
Sbjct: 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQD 141
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 28.1 bits (61), Expect = 6.8
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 12 ASTSPKLTHPYASASP--SNSLLSTTALRTKLTPSNLSSSFLPPFATTTAVTVTTTRRRS 69
AST+ L H A +SP + + P+ + V + RR
Sbjct: 8 ASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRL 67
Query: 70 LIVRAA 75
+
Sbjct: 68 ALTVLI 73
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 27.9 bits (62), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 92 GHVDHGKTTLTAALTMALASLG 113
G V G +T+ AA +A A++G
Sbjct: 153 GGV--GTSTVAAACAIAHANMG 172
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.6 bits (62), Expect = 7.9
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLA----KQVGVPNMVVFLNKQDQVD----DE--EL 219
I V+ +D M KE LL K +P ++ F NK D D + +L
Sbjct: 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVTSVKVSQL 150
Query: 220 LQLVELEVREL 230
L L ++ +
Sbjct: 151 LCLENIKDKPW 161
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 27.9 bits (63), Expect = 8.8
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 215 DDEELLQLVELEVRELLSSYEFPGDDVP--IISGSALLALEALMAN 258
DD+ + +VE ++R+ L++ + ++ GS A+EA++ +
Sbjct: 31 DDDYNIGVVE-QIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGS 75
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 27.3 bits (60), Expect = 8.9
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLG-NSAPKKYDEIDAAPEERARG 133
+ +G D GKTTL + L G A K ++
Sbjct: 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGK 51
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 27.2 bits (61), Expect = 9.3
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 173 DGAILVVSGADGP-MPQTKE--HILLAKQ--VGVPNMVVFLNKQD 212
+G + +V AD + ++KE L+ + VP +++ NK D
Sbjct: 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKID 137
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 27.3 bits (61), Expect = 9.6
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 26/92 (28%)
Query: 97 GKTTLTAALTMALASLG------------------NSAPKKYDEIDAAPEERARGITINT 138
GKTT + AL+ G + +D AA E+ GI
Sbjct: 14 GKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGI---- 69
Query: 139 ATVEYETENRHYAHVDCPGHA-DYVKNMITGA 169
+ + +A VD G + +
Sbjct: 70 ---RKDLADYDFAIVDGAGSLSVITSAAVMVS 98
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,347,811
Number of extensions: 475866
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 139
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)