RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011581
(482 letters)
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 277 bits (709), Expect = 2e-92
Identities = 153/203 (75%), Positives = 174/203 (85%), Gaps = 1/203 (0%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASL-GNSAPKKYDEIDAAPEERARGITINTATV 141
KPHVN+GTIGHVDHGKTTLTAALT A+ N K Y +ID APEERARGITINTA V
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHV 60
Query: 142 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV 201
EYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVS ADGPMPQT+EHILLA+QVGV
Sbjct: 61 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 120
Query: 202 PNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSI 261
P +VVF+NK D VDD ELL LVE+EVR+LL+ YEFPGD+VP+I GSALLALE + NP
Sbjct: 121 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKT 180
Query: 262 KRGENQWVDKIYELMDSVDSYIP 284
+RGEN+WVDKI+EL+D++D YIP
Sbjct: 181 RRGENEWVDKIWELLDAIDEYIP 203
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 237 bits (606), Expect = 4e-77
Identities = 127/204 (62%), Positives = 158/204 (77%), Gaps = 8/204 (3%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE 142
KPHVN+GTIGHVDHGKTTLTAA+T LA G + KKY+EID APEERARGITIN A VE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
Y T RHYAH DCPGHADYVKNMITG A +DG ILVV+ DGPMPQT+EH+LLA+Q+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 203 NMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++VV++NK D V D E+++LVELE+RELL+ + + G++ PII GSAL ALE +
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALE--------Q 172
Query: 263 RGENQWVDKIYELMDSVDSYIPIP 286
R + + +L+D+VD+YIP+P
Sbjct: 173 RDPELGLKSVQKLLDAVDTYIPVP 196
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 220 bits (562), Expect = 6e-70
Identities = 78/239 (32%), Positives = 112/239 (46%), Gaps = 30/239 (12%)
Query: 81 RKKPHVNIGTIGHVDHGKTTLTAALTMALASL---------------GNSAPKKYDEIDA 125
++K H+N+ IGHVD GK+T T L + G + K +D
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 61
Query: 126 APEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP 185
ER RGITI+ A ++ET +D PGH D++KNMITG +Q D AIL+++G G
Sbjct: 62 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 121
Query: 186 M-------PQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLQLVELEVRELLSSYEFP 237
QT+EH LLA +GV ++V +NK D V DE Q + E + +
Sbjct: 122 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 181
Query: 238 GDDVPIISGSALLA---LEALMANPSIKRGENQ---WVDKIYELMDSVDSYIPIPQRQT 290
VP + S +EA P K E + V K L++++D+ I P R T
Sbjct: 182 PKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPT 239
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 179 bits (455), Expect = 2e-54
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 32/231 (13%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASL---------------GNSAPKKYDEIDAAP 127
KPH+N+ IGHVDHGK+TL L M + G + K +D
Sbjct: 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 60
Query: 128 EERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-- 185
EER RG+TIN + +ET+ + +D PGH D+VKNMITGA+Q D AILVVS G
Sbjct: 61 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 120
Query: 186 -----MPQTKEHILLAKQVGVPNMVVFLNKQDQVD---DEELLQLVELEVRELLSSYEFP 237
QT+EHI+LAK +G+ ++V +NK D + DE+ + + +V + + SY F
Sbjct: 121 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 180
Query: 238 GDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQR 288
+ V + A + ++K W + ++ + +P +
Sbjct: 181 TNKVRFVPVVAPSGDNITHKSENMK-----WYNG--PTLEEYLDQLELPPK 224
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 150 bits (379), Expect = 1e-43
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 79 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINT 138
+ + +P VNIG +GHVDHGKTTL A+T S + K+ I E G+ +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESC 61
Query: 139 A---------------TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
+ + R + +D PGH + M++GAA MDGAILVV+ +
Sbjct: 62 KKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
Query: 184 -GPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVP 242
P PQT+EH + +GV N+++ NK D V EE L ++++ ++VP
Sbjct: 122 PFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR-QIKQFTK--GTWAENVP 178
Query: 243 IISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIP 286
II SA N I L++ ++ YI P
Sbjct: 179 IIPVSA-------------LHKIN-----IDSLIEGIEEYIKTP 204
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2
{Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 98
Score = 134 bits (339), Expect = 6e-39
Identities = 51/97 (52%), Positives = 71/97 (73%)
Query: 288 RQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQK 347
R + PFLL VE V+SI GRGTV TG +ERG +K G+ + +G + VTG+EMF K
Sbjct: 2 RDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHK 61
Query: 348 TLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITP 384
+LD A AGDN+G L+RG+++ D++RG+V+AKPG+I P
Sbjct: 62 SLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQP 98
>d1efca1 b.43.3.1 (A:205-296) Elongation factor Tu (EF-Tu), domain 2
{Escherichia coli [TaxId: 562]}
Length = 92
Score = 130 bits (328), Expect = 2e-37
Identities = 63/90 (70%), Positives = 77/90 (85%)
Query: 291 DLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLD 350
D PFLL +EDVFSI+GRGTV TGRVERG IKVGE V++VG+KET+ T TGVEMF+K LD
Sbjct: 3 DKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLD 62
Query: 351 EAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380
E AG+NVG+LLRG+++ +I+RG VLAKPG
Sbjct: 63 EGRAGENVGVLLRGIKREEIERGQVLAKPG 92
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 133 bits (335), Expect = 6e-37
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 82 KKPHVNIGTIGHVDHGKTTLTAAL---TMALASLGNSAPKK--------------YDEID 124
+K + T G+VD GK+TL L + + A + +D
Sbjct: 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVD 65
Query: 125 AAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 184
ER +GITI+ A + T R + D PGH Y +NM TGA+ D AI++V G
Sbjct: 66 GLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 125
Query: 185 PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVEL-EVRELLSSYEFPGDDVPI 243
QT+ H +A +G+ ++VV +NK D +E + + + F +
Sbjct: 126 VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAF 185
Query: 244 ISGSALLALEALMANPSIKRGENQWVD--KIYELMDSVD 280
+ SAL + N S + + W + E++++V+
Sbjct: 186 VPMSALKGDN--VVNKSER---SPWYAGQSLMEILETVE 219
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2
{Thermus thermophilus [TaxId: 274]}
Length = 100
Score = 127 bits (320), Expect = 3e-36
Identities = 67/100 (67%), Positives = 82/100 (82%), Gaps = 1/100 (1%)
Query: 286 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLK-ETRNFTVTGVEM 344
P R D PFL+ VEDVF+ITGRGTVATGR+ERG +KVG+ V++VGL ETR VTGVEM
Sbjct: 1 PVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEM 60
Query: 345 FQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITP 384
+KTL E +AGDNVG+LLRGV + +++RG VLAKPG+ITP
Sbjct: 61 HRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITP 100
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 128 bits (322), Expect = 8e-35
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 31/197 (15%)
Query: 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASL---------------GNSAPKKYDEIDAA 126
K HVNI IGHVD GK+TL + + G + +D+
Sbjct: 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDST 80
Query: 127 PEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
EER +G T+ +ETE+R ++ +D PGH YV NMI GA+Q D +LV+S G
Sbjct: 81 SEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEF 140
Query: 187 P-------QTKEHILLAKQVGVPNMVVFLNKQDQVDD-------EELLQLVELEVRELLS 232
QT+EH +LA+ G+ ++VV +NK D+ +E + + + +R +
Sbjct: 141 EAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAG 200
Query: 233 SYEFPGDDVPIISGSAL 249
DV + SA
Sbjct: 201 --YNSKTDVKYMPVSAY 215
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 122 bits (306), Expect = 3e-34
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 385 HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDR 444
H K A VY+L KEEGGRH PF + + P + T D+ R+ ++ MPG+
Sbjct: 1 HQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRI-----ILPPGKELAMPGED 55
Query: 445 IKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+K+ + L P+ E+G RF +R+G +T+G G++
Sbjct: 56 LKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVTDTPA 93
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 126 bits (318), Expect = 6e-34
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLG--NSAPKKYDEIDAAPEERARGITINTATVEYE 144
NIG H+D GKTT T + + + +D +ER RGITI A
Sbjct: 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 67
Query: 145 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNM 204
++ +D PGH D+ + +DGAI+V + G PQ++ A++ VP
Sbjct: 68 WKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-R 126
Query: 205 VVFLNKQDQVDDEELLQLVELEVR 228
+ F NK D+ + L + ++ R
Sbjct: 127 IAFANKMDKTGADLWLVIRTMQER 150
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 122 bits (307), Expect = 3e-33
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 32/214 (14%)
Query: 82 KKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKK---------YDEIDAAPEERAR 132
++ VNIG +GHVDHGKTTLT ALT + ++ EI P
Sbjct: 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRY 61
Query: 133 GITINTATVEYETEN-RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-GPMPQTK 190
+ +ETE R + +D PGH + M+ GA+ MDGAILV++ + P PQT+
Sbjct: 62 STSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR 121
Query: 191 EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALL 250
EH++ + +G N+++ NK + VD E+ L+ +++E + ++ PII SA
Sbjct: 122 EHLMALQIIGQKNIIIAQNKIELVDKEKALE-NYRQIKEFIE--GTVAENAPIIPISA-- 176
Query: 251 ALEALMANPSIKRGENQWVDKIYELMDSVDSYIP 284
G N I L+ +++ +IP
Sbjct: 177 -----------LHGAN-----IDVLVKAIEDFIP 194
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 117 bits (294), Expect = 1e-32
Identities = 65/98 (66%), Positives = 74/98 (75%), Gaps = 5/98 (5%)
Query: 385 HTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDR 444
HTKF A VYVLKKEEGGRH+ FF+GYRPQFY RTTDVTG V +MVMPGD
Sbjct: 1 HTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVV-----QLPPGVEMVMPGDN 55
Query: 445 IKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 482
+ VELI PVA E+G+RFAIREGG+TVGAGV+ I+E
Sbjct: 56 VTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 93
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 118 bits (297), Expect = 2e-30
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
N+ I HVDHGK+TLT +L + + + D +E+ RGITI + + +E
Sbjct: 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 78
Query: 147 NRH----------------YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK 190
+D PGH D+ + DGA++VV +G QT+
Sbjct: 79 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 138
Query: 191 EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLS 232
+ A VV +NK D+ E Q+ + ++ + +
Sbjct: 139 TVLRQALGER-IKPVVVINKVDRALLEL--QVSKEDLYQTFA 177
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 94
Score = 107 bits (269), Expect = 4e-29
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 291 DLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLD 350
D P L ++DV+ I G GTV GRVE G IK G V T V VEM + L+
Sbjct: 1 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVT--TEVKSVEMHHEQLE 58
Query: 351 EAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITP 384
+ + GDNVG ++ V +I+RG V P
Sbjct: 59 QGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPP 92
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and
4 {Methanococcus maripaludis [TaxId: 39152]}
Length = 92
Score = 107 bits (268), Expect = 6e-29
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 288 RQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQK 347
R T+ F + ++ F I G GTV TG + +G +KVG+ + ++ + + V ++ F++
Sbjct: 1 RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTK--VRSIQYFKE 58
Query: 348 TLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGT 381
++ EA AGD VG+ ++GV I RG +L T
Sbjct: 59 SVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDT 92
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain 2
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 99.2 bits (247), Expect = 5e-26
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 290 TDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTL 349
D P + ++DV+SI+G GTV GRVE G +KVG+ + + + V +E +
Sbjct: 2 VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM--PAGKVGEVRSIETHHTKM 59
Query: 350 DEAMAGDNVGLLLRGVQKADIQRGMVLAKPG 380
D+A GDN+G +RGV+K DI+RG V+ P
Sbjct: 60 DKAEPGDNIGFNVRGVEKKDIKRGDVVGHPN 90
>d1r5ba1 b.43.3.1 (A:460-554) Eukaryotic peptide chain release
factor ERF2, post-G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 96.8 bits (241), Expect = 4e-25
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 287 QRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQ 346
+R+ + PF++ + + GT+ G++E G+IK V ++ + +T T +
Sbjct: 3 ERKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIY-DEAD 59
Query: 347 KTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKP 379
+ + ++ GD V L +RG D+Q G VL
Sbjct: 60 EEISSSICGDQVRLRVRGDDS-DVQTGYVLTST 91
Score = 25.1 bits (55), Expect = 7.6
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 413 QFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVE 450
+ + T V++I ++ DEE + GD++++ V
Sbjct: 39 NVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 76
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 121
Score = 93.6 bits (232), Expect = 1e-23
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 286 PQRQTDLPFLLAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLK----- 332
P+R + P + V F + G V G + +G +KVG+ +++
Sbjct: 1 PKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEH 60
Query: 333 -----ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLR---GVQKADIQRGMVLAKPGTITP 384
E + ++ + ++EA G VG+ + + K D+ G V+ KPG + P
Sbjct: 61 GRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPP 120
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit,
domain II {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 118
Score = 92.4 bits (229), Expect = 3e-23
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 288 RQTDLPFLLAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLKETRNF-- 337
R D + V F I +G V G + +G KVG+ +++ +
Sbjct: 1 RDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNK 60
Query: 338 --------TVTGVEMFQKTLDEAMAGDNVGLLLR---GVQKADIQRGMVLAKPGTITP 384
+ + L +A G +G+ + K+D G V+ PGT+ P
Sbjct: 61 TFWKPLTTKIVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPP 118
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 81.3 bits (199), Expect = 1e-18
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 30/205 (14%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE 142
++N+G GH+DHGKTTL+ LT ++ + D PE + RGITI+
Sbjct: 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITIDIGFSA 53
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
++ EN VD PGHAD ++ +++ A +D A++VV +GP QT EH+L+ +P
Sbjct: 54 FKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP 113
Query: 203 NMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++ + + E ++ E+ ++ +L S + II SA K
Sbjct: 114 --IIVVITKSDNAGTEEIKRTEMIMKSILQST-HNLKNSSIIPISA-------------K 157
Query: 263 RGENQWVDKIYELMDSVDSYIPIPQ 287
G + EL + + + + +
Sbjct: 158 TGFG-----VDELKNLIITTLNNAE 177
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 91
Score = 77.6 bits (191), Expect = 2e-18
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 296 LAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAMAG 355
+ VE+V +I G V G VE G I VG V + +E ++ ++ A+AG
Sbjct: 12 VVVEEVVNIMG-KDVIIGTVESGMIGVGFKVKGPSGIG----GIVRIERNREKVEFAIAG 66
Query: 356 DNVGLLLRGVQKADIQRGMVLAKP 379
D +G+ + G + +++G VL
Sbjct: 67 DRIGISIEG-KIGKVKKGDVLEIY 89
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit,
domain II {Sulfolobus solfataricus [TaxId: 2287]}
Length = 114
Score = 75.4 bits (185), Expect = 2e-17
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 21/113 (18%)
Query: 288 RQTDLPFLLAVEDVFSITG--------RGTVATGRVERGTIKVGETVDLVGLKETRNF-- 337
R ++ V F + +G V G + +G KV + + ++
Sbjct: 1 RDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGK 60
Query: 338 --------TVTGVEMFQKTLDEAMAGDNVGLLLR---GVQKADIQRGMVLAKP 379
++ + + EA G V + + KAD G ++
Sbjct: 61 VSYEPIFTKISSIRFGDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIITLA 113
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 76.1 bits (186), Expect = 4e-16
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 87 NIGTIGHVDHGKTTLTAAL---TMALASLGNSAPKKYDEIDAAPEERARGITINTATVEY 143
+ +GH GKTTLT AL T A G + D PE + T+ T
Sbjct: 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPL 62
Query: 144 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPN 203
+D PG+ D+V + D A++ VS G T+ +A+++
Sbjct: 63 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-GLP 121
Query: 204 MVVFLNKQDQV 214
+V + K D+
Sbjct: 122 RMVVVTKLDKG 132
>d1zunb1 b.43.3.1 (B:238-329) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 2-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 92
Score = 71.1 bits (174), Expect = 6e-16
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 293 PFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEA 352
V+ V G + G + G+ + V L ++ V + F+ L++A
Sbjct: 6 DLRFPVQYVNRPNLNFRGFAGTLASGIVHKGDEI--VVLPSGKSSRVKSIVTFEGELEQA 63
Query: 353 MAGDNVGLLLRGVQKADIQRGMVLAKPGT 381
G V L + + DI RG +L
Sbjct: 64 GPGQAVTLTMED--EIDISRGDLLVHADN 90
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 72.4 bits (176), Expect = 4e-15
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 3/143 (2%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLGNSAP--KKYDEIDAAPEERARGITINTATVEYET 145
+ +GHVDHGKTTL + + + + + + +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMV 205
+D PGH + G A D AIL+V +G PQT+E + + + V
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT-PFV 126
Query: 206 VFLNKQDQVDDEELLQLVELEVR 228
V NK D++ + +
Sbjct: 127 VAANKIDRIHGWRVHEGRPFMET 149
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 69.6 bits (169), Expect = 5e-14
Identities = 31/224 (13%), Positives = 53/224 (23%), Gaps = 63/224 (28%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLGNSA---------------------PKKYDEIDAA 126
+ +G GKTTLT L A +EI
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 127 PEERARGITINTATV-----------EYETENRHYAHVDCPGHADYVKNMITGAAQMDG- 174
I + + + Y +D PG + G M+
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122
Query: 175 ----AILVVSGADGPMPQTKEHILLAK-----QVGVPNMVVFLNKQDQVDDEELLQL--- 222
+ + P + ++G + LNK D + +EE +
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA-LNKVDLLSEEEKERHRKY 181
Query: 223 -----------------VELEVRELLSSYEFPGDDVPIISGSAL 249
L ++ S V ++ SA
Sbjct: 182 FEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAK 225
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 56.6 bits (135), Expect = 5e-10
Identities = 38/201 (18%), Positives = 67/201 (33%), Gaps = 23/201 (11%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE 142
+ + +G + GK+TL A+ +L + P + + T
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65
Query: 143 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 202
++R V + I A D ++V+ G Q + L ++ G
Sbjct: 66 LRRKSRVEPRTVEKYSNYRVVDSIEKA---DVVVIVLDATQGITRQDQRMAGLMERRGRA 122
Query: 203 NMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIK 262
++VVF V E+ RE L D P+I SA
Sbjct: 123 SVVVFNKWDLVVHREKRYDEFTKLFREKLY----FIDYSPLIFTSA-------------D 165
Query: 263 RGENQWVDKIYELMDSV-DSY 282
+G N +D++ + M+ SY
Sbjct: 166 KGWN--IDRMIDAMNLAYASY 184
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 128
Score = 49.4 bits (118), Expect = 4e-08
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 294 FLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMFQKTLDEAM 353
L + VF + + V G I+ G + + TV ++ + L A
Sbjct: 7 IRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMNDDGETVG--TVESMQDKGENLKSAS 63
Query: 354 AGDNVGLLLRGVQ-KADIQRGMVL 376
G V + ++ I G L
Sbjct: 64 RGQKVAMAIKDAVYGKTIHEGDTL 87
>d1f60a2 b.44.1.1 (A:335-441) Elongation factor eEF-1alpha,
C-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 46.7 bits (111), Expect = 2e-07
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 386 TKFLAIVYVLKKEEGGRH-SPFFAGYRPQFYMRTTDVTGRVSSI--------MNDKDEES 436
F A V VL H AGY P T + R + ++
Sbjct: 2 ASFNATVIVLN------HPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHP 55
Query: 437 KMVMPGDRIKMVVELIMPVACEQ-----GM-RFAIREGGKTVGAGVIQSIIE 482
K + GD + P+ E + RFA+R+ +TV GVI+S+ +
Sbjct: 56 KFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 107
>d1jnya2 b.44.1.1 (A:323-429) Elongation factor eEF-1alpha,
C-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 107
Score = 43.8 bits (103), Expect = 3e-06
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 388 FLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESK--------MV 439
F A + V+ + GY P ++ T V RVS +++ D + +
Sbjct: 4 FTARIIVVWHP-----TALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFL 58
Query: 440 MPGDRIKMVVELIMPVACEQGM------RFAIREGGKTVGAGVIQSI 480
GD + + I P+ E+ RFA+R+ GKTVG G+I +
Sbjct: 59 KQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 105
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 45.9 bits (108), Expect = 6e-06
Identities = 22/185 (11%), Positives = 41/185 (22%), Gaps = 28/185 (15%)
Query: 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTA 139
E +N+ G GK++ L +E AA
Sbjct: 51 EIDSSVLNVAVTGETGSGKSSFINTLRG----------IGNEEEGAAKTGVVE--VTMER 98
Query: 140 TVEYETENRHYAHVDCPG---HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLA 196
+ D PG + + ++ A +
Sbjct: 99 HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAI 158
Query: 197 KQVGVPNMVVFLNKQDQV------------DDEELLQLVELEVRELLSSYEFPGDDVPII 244
+ V K D D E++LQ + L + ++
Sbjct: 159 SMMKKEFYFVR-TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL 217
Query: 245 SGSAL 249
S +
Sbjct: 218 SNKNV 222
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 40.9 bits (94), Expect = 9e-05
Identities = 24/197 (12%), Positives = 46/197 (23%), Gaps = 34/197 (17%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN 147
+ +G + GK+TL L G + +T + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLL------GVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVF 207
+ +D G + A +V L VG +++
Sbjct: 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 121
Query: 208 LNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQ 267
NK D E E + + + S
Sbjct: 122 GNKLDAAKYPE-------EAMKAYHELLPEAEPRML----------------SALDERQ- 157
Query: 268 WVDKIYELMDSVDSYIP 284
+ EL + + +P
Sbjct: 158 ----VAELKADLLALMP 170
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 41.2 bits (95), Expect = 1e-04
Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 22/174 (12%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
+ +G D GKT L L I + V
Sbjct: 2 AVLFVGLCDSGKTLLFVRLL------TGQYRDTQTSI---------TDSSAIYKVNNNRG 46
Query: 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV------- 199
N + + + + + VV A L + +
Sbjct: 47 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 106
Query: 200 GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALE 253
P++++ NKQD + + + +EL + + S+ +
Sbjct: 107 NSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQ 160
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 41.2 bits (95), Expect = 1e-04
Identities = 27/214 (12%), Positives = 58/214 (27%), Gaps = 36/214 (16%)
Query: 83 KPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVE 142
+P + I G + GKT+L LT + +
Sbjct: 3 QPSIII--AGPQNSGKTSLLTLLT--------------------TDSVRPTVVSQEPLSA 40
Query: 143 YETENRHYAHVDCPGHADYVKN----MITGAAQMDGAILVVSGADGP---------MPQT 189
+ + VD PGH + T A + G I +V P +
Sbjct: 41 ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 100
Query: 190 KEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSAL 249
+ + G+ ++ NK + ++ + E+ E + +
Sbjct: 101 LSITESSCENGIDILIA-CNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN 159
Query: 250 LALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283
A ++ + + + + + I
Sbjct: 160 EEDYAENTLDVLQSTDGFKFANLEASVVAFEGSI 193
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 40.5 bits (93), Expect = 2e-04
Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 31/204 (15%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN 147
I G + GK+TL LT G I+ + + +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 148 RHYAHVDCPGHADYVK------NMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGV 201
D H ++ + I+ G +P E +++ +
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 202 PNMVVFLNKQDQVDD-EELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPS 260
P +V NK D++ + +E++ + + D I SA
Sbjct: 123 PTIVAV-NKLDKIKNVQEVINFLAEKFEV-----PLSEIDKVFIPISA------------ 164
Query: 261 IKRGENQWVDKIYELMDSVDSYIP 284
K G+N I L + + I
Sbjct: 165 -KFGDN-----IERLKNRIFEVIR 182
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 39.8 bits (91), Expect = 3e-04
Identities = 21/198 (10%), Positives = 59/198 (29%), Gaps = 27/198 (13%)
Query: 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145
+ + G + GK++ LT + S ++ E ++
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL----PGY 72
Query: 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMV 205
+ + + G ++++ ++ I A + +V
Sbjct: 73 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132
Query: 206 VFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGE 265
+ K D++ + VRE + ++ DV + + S+ + +
Sbjct: 133 LL-TKADKLASGARKAQLN-MVREAVLAF---NGDVQVETFSS-------------LKKQ 174
Query: 266 NQWVDKIYELMDSVDSYI 283
+ +L +D++
Sbjct: 175 G-----VDKLRQKLDTWF 187
>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II
{Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 103
Score = 37.0 bits (85), Expect = 8e-04
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 286 PQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKETRNFTVTGVEMF 345
+R D P L V V G VA R+ RG +K G+++ + +
Sbjct: 2 TERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSLQSEAGQVRLPHLYVPMGKD 61
Query: 346 QKTLDEAMAGDNVGL 360
++EA AG +G+
Sbjct: 62 LLEVEEAEAGFVLGV 76
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 37.4 bits (85), Expect = 0.001
Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN 147
I +G + GK+TL L S+ + + I T
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP------ 61
Query: 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVF 207
+ + K + ++ I VV G E +L + G +++
Sbjct: 62 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLREGKAPVILA 119
Query: 208 LNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQ 267
+NK D V ++ L + ++ + VPI S + G N
Sbjct: 120 VNKVDNVQEKADLLPHLQFLASQMNFLDI----VPI----------------SAETGLN- 158
Query: 268 WVDKIYELMDSVDSYIP 284
+ + V ++P
Sbjct: 159 ----VDTIAAIVRKHLP 171
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 105
Score = 32.7 bits (74), Expect = 0.019
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 403 HSPFFAGYRPQFYMRTTDVTGRVSSIMNDKD------EESKMVMPGDRIKMVVELIMPVA 456
P G + T+ V G ++SI + D + + + ++ V L P+A
Sbjct: 15 EEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIA 74
Query: 457 CEQGM------RFAI--REGGKTVGAGVIQS 479
+ F + R TV AG+I +
Sbjct: 75 LDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 105
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.0 bits (74), Expect = 0.040
Identities = 39/218 (17%), Positives = 64/218 (29%), Gaps = 51/218 (23%)
Query: 71 IVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEER 130
I+R + +++ V I +G + GKTTL L +
Sbjct: 5 ILRKLKSAPDQE---VRILLLGLDNAGKTTLLKQLASE-------------------DIS 42
Query: 131 ARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK 190
T +++ D G + D I V+ AD +
Sbjct: 43 HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET 102
Query: 191 EHILL-----AKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIIS 245
L K VP +++F NKQD + E+ E L+ + I S
Sbjct: 103 GQELTELLEEEKLSCVP-VLIFANKQDLLTAAP-----ASEIAEGLNLHTIRDRVWQIQS 156
Query: 246 GSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYI 283
SA GE + + M+ V +
Sbjct: 157 CSA-------------LTGEG-----VQDGMNWVCKNV 176
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 32.6 bits (73), Expect = 0.047
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 32/169 (18%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
+ +G + GK+TL L D A G T + + E
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNE---------------DRAIVTDIPGTTRDVISEEIVIR 46
Query: 147 NRHYAHVDCPGHADYVKNMITGAAQM------DGAILVVSGADGPMPQTKEHILLAKQVG 200
+ VD G +++ + A +V+ D P +E + +++
Sbjct: 47 GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIK 106
Query: 201 VPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSAL 249
+V +NK D V+ ++ G D ++ SAL
Sbjct: 107 NKRYLVVINKVDVVEKINEEEI-----------KNKLGTDRHMVKISAL 144
>d1g7sa1 b.43.3.1 (A:228-328) Initiation factor IF2/eIF5b, domains 2
and 4 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 101
Score = 31.2 bits (71), Expect = 0.053
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 28/81 (34%)
Query: 306 GRGTVATGRVERGTIKVGETV-----------------DLVGLKETRNF----------- 337
G G + G ++ +T+ L+E R
Sbjct: 17 GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVV 76
Query: 338 TVTGVEMFQKTLDEAMAGDNV 358
G+++ +D+ MAG +
Sbjct: 77 AAAGIKIVAPGIDDVMAGSPL 97
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 32.4 bits (72), Expect = 0.055
Identities = 24/193 (12%), Positives = 50/193 (25%), Gaps = 37/193 (19%)
Query: 91 IGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHY 150
+G GKTT + + P I V + +
Sbjct: 8 VGLQYSGKTTFVNVIA------SGQFNEDMI-----PTVGFNMRKITKGNVTIKLWDIGG 56
Query: 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 210
Y + + +D A + + + + G+P ++V NK
Sbjct: 57 QPRFRSMWERYCRGVSAIVYMVDAAD--QEKIEASKNELHNLLDKPQLQGIP-VLVLGNK 113
Query: 211 QDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVD 270
+D + +L+E + ++ S S K +N
Sbjct: 114 RDLPGALDEKELIEKMNLSAIQDR-----EICCYSISC-------------KEKDN---- 151
Query: 271 KIYELMDSVDSYI 283
I + + +
Sbjct: 152 -IDITLQWLIQHS 163
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 32.4 bits (72), Expect = 0.063
Identities = 22/180 (12%), Positives = 57/180 (31%), Gaps = 10/180 (5%)
Query: 70 LIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEE 129
+++ A + + + I G + GK++ +L S+ +
Sbjct: 8 IVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII 67
Query: 130 RARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT 189
++ + + ++ IT ++ + +V P
Sbjct: 68 NDELHFVDV----PGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD 123
Query: 190 KEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSAL 249
+ K G+P +V+ K D++ + + + VR+ L+ +I S+
Sbjct: 124 VQMYEFLKYYGIPVIVIA-TKADKIPKGKWDKHAK-VVRQTLNIDPED----ELILFSSE 177
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.4 bits (73), Expect = 0.071
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 18/127 (14%)
Query: 91 IGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHY 150
IG GKT + + ++ + GI T+E + +
Sbjct: 12 IGDSGVGKTCVLFRFS------EDAFNSTFIST--------IGIDFKIRTIELDGKRIKL 57
Query: 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADG----PMPQTKEHILLAKQVGVPNMVV 206
D G + G +LV + + +I V M++
Sbjct: 58 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 117
Query: 207 FLNKQDQ 213
Sbjct: 118 GNKCDVN 124
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 32.2 bits (72), Expect = 0.082
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 17/126 (13%)
Query: 91 IGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHY 150
IG GK+ L + T N + G+ T +++ + +
Sbjct: 10 IGDSGVGKSNLLSRFT------RNEFNLESKST--------IGVEFATRSIQVDGKTIKA 55
Query: 151 AHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNMVVFL- 208
D G Y + GA+LV A + + + N+V+ L
Sbjct: 56 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 115
Query: 209 -NKQDQ 213
NK D
Sbjct: 116 GNKSDL 121
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 31.8 bits (71), Expect = 0.11
Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 22/177 (12%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
++G +G GK+TL + ++ A + + + + +
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHF---------------TTLVPNLGMVETDD 47
Query: 147 NRHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV 199
R + D PG + + + + V+ + + L Q
Sbjct: 48 GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Query: 200 GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALM 256
+ + + ++ E E V IS L L+
Sbjct: 108 LSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELL 164
>d1n0ua1 b.43.3.1 (A:344-481) Elongation factor 2 (eEF-2), domain II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 138
Score = 31.2 bits (70), Expect = 0.13
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 269 VDKIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFSITGRGT-VATGRVERGTIKVGETVD 327
+++YE + I I +L V + + +G A GRV GT+K G+ V
Sbjct: 10 AEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVR 69
Query: 328 LVG-------LKETRNFTVTGVEMF----QKTLDEAMAGDNVGL 360
+ G + + V + + +D+ AG+ +GL
Sbjct: 70 IQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGL 113
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 31.3 bits (69), Expect = 0.15
Identities = 19/197 (9%), Positives = 55/197 (27%), Gaps = 35/197 (17%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETEN 147
+ +G + GK+TL L ++ + + + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLV-------KKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 55
Query: 148 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVF 207
+ +K + + +L V + + E + + + ++
Sbjct: 56 CGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILV 115
Query: 208 LNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQ 267
NK + + + E EL G+ +P+ S + N
Sbjct: 116 ANKAENLREFEREVKPELYSLGF-------GEPIPV----------------SAEHNIN- 151
Query: 268 WVDKIYELMDSVDSYIP 284
+ +++++ +
Sbjct: 152 ----LDTMLETIIKKLE 164
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 31.2 bits (70), Expect = 0.20
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 169 AAQMDGAILVVSGADGPMPQTK---EHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVEL 225
+D A+LV S P T ++L + + ++ K D ++D++ E
Sbjct: 8 ICNVDQAVLVFSAVQ-PSFSTALLDRFLVLVEANDIQPIICI-TKMDLIEDQDT----ED 61
Query: 226 EVRELLSSYEFPGDDVPIISGSALLALEALMA 257
++ Y G DV + S +L ++
Sbjct: 62 TIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 93
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 30.8 bits (68), Expect = 0.22
Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 51/218 (23%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
++G +G+ + GK++L AA+T A V +E
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRA---------------HPKIAPYPFTTLSPNLGVVEVSE 47
Query: 147 NRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGADGPMPQTK----EHILL 195
+ D PG + + A+ + V+ AD P+ + E
Sbjct: 48 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Query: 196 AKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEAL 255
+ +V LNK D +++E + L + + + ++ SAL
Sbjct: 108 DPALLRRPSLVALNKVDLLEEEAVKALAD----------ALAREGLAVLPVSAL------ 151
Query: 256 MANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLP 293
G + ++ L+ S P P+ +P
Sbjct: 152 -----TGAGLPALKEALHALVRS----TPPPEMPKPVP 180
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 30.2 bits (67), Expect = 0.54
Identities = 28/193 (14%), Positives = 47/193 (24%), Gaps = 26/193 (13%)
Query: 74 AARGKFERKKPHVN----IGTIGHVDHGKTTLTAALTMALASLG-NSAPKKYDEI----- 123
A R + P +G G GK+T AL L + G A D
Sbjct: 36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG 95
Query: 124 DAAPEERARGITINTATVEYETENRHY-----------AHVDCPGHADYVKNMITGAAQM 172
+ ++ R + + + + A + ++
Sbjct: 96 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG 155
Query: 173 DGAILVVSGADGPMPQTKEHILLAKQVGVPNM-----VVFLNKQDQVDDEELLQLVELEV 227
V D + Q + ++ +NK D D E E
Sbjct: 156 QSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEY 215
Query: 228 RELLSSYEFPGDD 240
R L P
Sbjct: 216 RAALHILTPPSAT 228
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 28.2 bits (63), Expect = 0.65
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 298 VEDVFSITGRGTVATGRVERGTIKVGETVDLVGLKET-RNFTVTGVEMFQKTLDEAMAGD 356
V F ++ GT+A V G I V L+ + ++ ++ + E G
Sbjct: 11 VRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGY 70
Query: 357 NVGLLLRGVQKADIQRGMVL 376
GL ++ DI+ G V+
Sbjct: 71 ECGLTIKNFN--DIKEGDVI 88
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.9 bits (63), Expect = 0.80
Identities = 18/138 (13%), Positives = 36/138 (26%), Gaps = 9/138 (6%)
Query: 86 VNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYET 145
+ + G + GK++L AL +I + R +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALA-------GREAAIVTDIAGTTRDVLREHIHIDGMPLHII 54
Query: 146 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL--LAKQVGVPN 203
+ ++ Q D + +V G E +A+
Sbjct: 55 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLP 114
Query: 204 MVVFLNKQDQVDDEELLQ 221
+ V NK D + +
Sbjct: 115 ITVVRNKADITGETLGMS 132
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 29.2 bits (64), Expect = 0.92
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 9/123 (7%)
Query: 97 GKTTLTAALTMALASLGNSAPKKYDEIDAAPEERAR---GITINTATVEYETENRHYAHV 153
GKT+++ A + LA G K+ + P TI + A
Sbjct: 20 GKTSISCATAIRLAEQG----KRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALE 75
Query: 154 DCPGHA--DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQ 211
P A Y ++ + +V S + I + L +
Sbjct: 76 IDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTR 135
Query: 212 DQV 214
Sbjct: 136 FDH 138
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 28.9 bits (63), Expect = 1.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 97 GKTTLTAALTMALASLG 113
GKT + AL A + G
Sbjct: 14 GKTVASCALLQAAKAAG 30
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 29.0 bits (63), Expect = 1.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 97 GKTTLTAALTMALASLG 113
GKTT+TA L +ALA LG
Sbjct: 14 GKTTITANLGVALAQLG 30
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
epsilon {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 161
Score = 27.9 bits (62), Expect = 1.5
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Query: 211 QDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVD 270
+ +++ L LE+ L S +V I + +ALL ++ V
Sbjct: 11 ERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVK 70
Query: 271 KIYELMDSVDSYIPIPQRQTDLPFLLAVEDVFS 303
+ + DL + + +
Sbjct: 71 VFNQWGLLFKRQAFDEEEYIDL--MNIIMEKIV 101
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 28.4 bits (62), Expect = 1.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 97 GKTTLTAALTMALASLGNSAPKKYDEIDAAP 127
GK+T T LT L ++G K + P
Sbjct: 13 GKSTTTQNLTSGLHAMG----KTIMVVGCDP 39
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 28.1 bits (61), Expect = 2.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 97 GKTTLTAALTMALASLG 113
GKTT+TA L++AL G
Sbjct: 15 GKTTVTANLSVALGDRG 31
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 28.1 bits (62), Expect = 2.3
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 62 VTTTRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNS 115
+++ RR ++ G ++ P++ I G V GK+T L L+
Sbjct: 58 ISSNLRRQAVLEQFLGTNGQRIPYI-ISIAGSVAVGKSTTARVLQALLSRWPEH 110
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.3 bits (62), Expect = 2.4
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 58 TAVTVTTTRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAP 117
T V R ++L + + +G G GK+T A M L G
Sbjct: 27 TLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV- 85
Query: 118 KKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH 158
+D + I + + P
Sbjct: 86 -AVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSS 125
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 28.1 bits (61), Expect = 2.4
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 216 DEELLQLVELEVRELLSS-YEFPGDDVPIISGSALLALEALMAN 258
EL + ++ EV++ L ++ +SGSA +EA+++N
Sbjct: 45 HAELFRTMD-EVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSN 87
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 26.6 bits (59), Expect = 2.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 241 VPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSV 279
+P + A+EAL ++P+ EN+++D + D +
Sbjct: 77 MPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGI 115
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.3 bits (59), Expect = 3.1
Identities = 25/176 (14%), Positives = 46/176 (26%), Gaps = 14/176 (7%)
Query: 87 NIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETE 146
++ G GKTTL + L S G + E R G I V
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-----VPVDGFYTEEVRQGGRRIGFDVVTLSGT 57
Query: 147 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVV 206
+ V + G +D + + + G V+
Sbjct: 58 RGPLSRVG-LEPPPGKRECRVGQYVVDLTSF-----EQLALPVLRNADCSSGPGQRVCVI 111
Query: 207 FLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIK 262
+ ++ + L + +P+ G L +E + +K
Sbjct: 112 DE---IGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVK 164
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 27.5 bits (60), Expect = 3.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 97 GKTTLTAALTMALASLGNSAPKKYDEIDAAP 127
GK+T T L ALA +G KK + P
Sbjct: 14 GKSTTTQNLVAALAEMG----KKVMIVGCDP 40
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 27.6 bits (60), Expect = 3.6
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 97 GKTTLTAALTMALASLGNSAPKKYDEIDAAPEERAR---GITINTATVEYETENRHYAHV 153
GKTT+ AA+ + LA +G + P ++N V +
Sbjct: 32 GKTTMAAAIAVRLADMG----FDVHLTTSDPAAHLSMTLNGSLNNLQVSRIDPHEETERY 87
Query: 154 DCPGHADYVKNMITGAAQMDGAILVVSGADGPM 186
K + ++ L +
Sbjct: 88 RQHVLETKGKELDEAGKRLLEEDLRSPCTEEIA 120
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 27.5 bits (60), Expect = 3.7
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 390 AIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTG--RVSSIMNDKDEESKMVMPGDRIKM 447
++ + KKE G + + P Y D + V I ++ + V+ +++K
Sbjct: 14 PVIRIFKKENGEFKIDYDRNFEPYIYALLKDDSAIEDVKKITAERHGTTVRVVRAEKVKK 73
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 27.7 bits (60), Expect = 3.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 215 DDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMAN 258
E ++ + R LL +V I++GS LA+EAL+ N
Sbjct: 27 RTEAAREVFL-KARGLLREAFRTEGEVLILTGSGTLAMEALVKN 69
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 27.5 bits (61), Expect = 4.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 97 GKTTLTAALTMALASLGNSA 116
GKTT + LT ALA LG
Sbjct: 67 GKTTTSVGLTDALARLGKRV 86
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752
{Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 26.9 bits (59), Expect = 5.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 243 IISGSALLALEALMANPSIKRGENQW--VDKIYEL 275
IS + E L+ +P K E +D+I+ L
Sbjct: 232 YISRDRKVLEEILIRDPRTKSYEQIVQVLDEIFNL 266
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.7 bits (58), Expect = 5.8
Identities = 14/149 (9%), Positives = 33/149 (22%), Gaps = 19/149 (12%)
Query: 80 ERKKPHVNIGTIGHVDHGKTTLTAALTMA-LASLGNSAPKKYDEIDAAPEERARGITINT 138
+ + I +G GK++ ++ + S+ + + + + I
Sbjct: 27 QEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIID 86
Query: 139 ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGA----ILVVSGADGPMPQTKEHIL 194
++ D N+I + A K
Sbjct: 87 T----------PGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAK 136
Query: 195 LAKQVGVP----NMVVFLNKQDQVDDEEL 219
+V L + L
Sbjct: 137 AITDSFGKGIWNKAIVALTHAQFSPPDGL 165
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 25.4 bits (56), Expect = 6.6
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 442 GDRIKMVVELIMPVACEQGMRFAI--REGGK--TVGAGVIQ 478
GD ++L +P+ E G R AI R G + +G G I+
Sbjct: 51 GDIAD--IKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE 89
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.0 bits (56), Expect = 7.2
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 88 IGTIGHVDHGKTTLTAALTMALASLG-NSAPKKYD---EIDAAPEERARGITINTATVEY 143
+G+ GKTTL A G K+ A PE V
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63
Query: 144 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD 183
E + + +++ A + +++V G
Sbjct: 64 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYK 103
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 25.0 bits (55), Expect = 8.9
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 18/65 (27%)
Query: 418 TTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAI--REGGK--TVG 473
T G V+ + D+ + V+L +PV E G R AI + G + +G
Sbjct: 38 TARTMGLVTGLGKDE--------------IEVKLQIPVCAEPGDRVAISRQIGSRWRLIG 83
Query: 474 AGVIQ 478
G+I+
Sbjct: 84 YGIIK 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.370
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,698,306
Number of extensions: 79789
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 82
Length of query: 482
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,185,626
Effective search space: 465951018
Effective search space used: 465951018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.7 bits)