BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011586
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 374 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTL 433
+ Y ++ ++VGI L ++V++ +I V TVG G+MG +GNKG V++ H T
Sbjct: 74 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 133
Query: 434 FCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHE 482
C V +HL + ++ + +RN D +I R F P +I +H+
Sbjct: 134 ICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPSLPPLTISNHD 180
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 374 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTL 433
+ Y ++ ++VGI L ++V++ +I V TVG G+MG +GNKG V++ H T
Sbjct: 77 AKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTS 136
Query: 434 FCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHE 482
C V +HL + ++ + +RN D +I R F P +I +H+
Sbjct: 137 ICVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQPDPSLPPLTISNHD 183
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLF 434
YV++ S Q+VG L I+ + S I+NV + G+ G GNKG+V++ T
Sbjct: 101 GYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGL 160
Query: 435 CFVCAHLTSGEKDGDELKRNADVHEIHRRTHFR 467
CF+ +HL +G + DE R+ D I FR
Sbjct: 161 CFITSHLAAGYTNYDE--RDHDYRTIASGLRFR 191
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 82 IRRRKSETFRAQYINTKEVRICVGTWNVGGKXXXXXXXXXXXXXMNEPADIYVLGLQEIV 141
+R+R++E + K V+I V ++N+ G ADIYV+G QEIV
Sbjct: 12 LRKRENE-----FSEHKNVKIFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIV 66
Query: 142 PLTAGNIFGAEDSRPVSKWENIIRDTLN 169
LT + A+ ++ +WE+ ++ LN
Sbjct: 67 QLTPQQVISADPAKR-REWESCVKRLLN 93
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 365 ETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVS 424
ET ++ YV + S +++++++RR L V STV ++ I KG++
Sbjct: 76 ETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALG 135
Query: 425 VSMSIHQTLFCFVCAHLTSGEKDGDELKRNAD 456
+S + T F F+ +H TSG DG +R D
Sbjct: 136 ISFTFFGTSFLFITSHFTSG--DGKVAERLLD 165
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 92 AQYINTKEVRICVGTWNVGGKXXX--XXXXXXXXXXMNEPADIYVLGLQEIVPLTAGNIF 149
A+Y + V + V TWN+ G+ + D+YV+G+QE
Sbjct: 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE---------- 67
Query: 150 GAEDSRPVSKWENIIRDTLN 169
G D R +WE +++TL
Sbjct: 68 GCSDRR---EWETRLQETLG 84
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 376 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFC 435
Y + + + I + + V+ I +V S+V G+ +GNKG+V VS + T F
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFG 140
Query: 436 FVCAHLTSGEKDGDELKRNADVHEIHR 462
FV HLTSG + +RN + +I R
Sbjct: 141 FVNCHLTSGNE--KTARRNQNYLDILR 165
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 75 TSETFPRIRRRKSETFRAQYINTKEVRICVGTWNVGG 111
+S PR S+T R I+T R+ +GTW +GG
Sbjct: 7 SSGLVPRGSHMASDTIRIPGIDTPLSRVALGTWAIGG 43
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 55 FAQSQFRVPKEEEAQYDPNGTSETFPRIRRRKSETFRAQYINTK 98
+ ++QF V E PNG S TFP + RK E RA IN K
Sbjct: 277 YCENQFTVEAAEVVF--PNGKSHTFPELAYRK-EMVRADLINKK 317
>pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
pdb|4FYD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
Length = 910
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 209 SDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDMPAENN 257
+D+ EE+ PL + G D + KP KM ++E+ D+P+E++
Sbjct: 56 TDIHEEIIPLLMDKYGLDNIRAKPQKMKYSFELP--------DIPSESD 96
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 305 GLSWPEPPLNLLTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDD----------MSS 354
G W PP+NL P L ++S + N RYS P D +S
Sbjct: 1 GSDWVIPPINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISG 60
Query: 355 ELALLAEIDIETLMKRKRRSSYVRMVSKQM 384
+L++ +D E + + R+ V + Q+
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQV 90
>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
Length = 910
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 209 SDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDMPAENN 257
+D+ EE+ PL + G D + KP KM ++E+ D+P+E++
Sbjct: 56 TDIHEEIIPLLMDKYGLDNIRAKPQKMKYSFELP--------DIPSESD 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,401,920
Number of Sequences: 62578
Number of extensions: 433605
Number of successful extensions: 873
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 16
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)