Query 011586
Match_columns 482
No_of_seqs 343 out of 1021
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 7E-99 2E-103 803.6 31.0 434 7-482 1-470 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 3.6E-48 7.8E-53 424.2 14.9 188 80-482 522-715 (1080)
3 smart00128 IPPc Inositol polyp 100.0 4.1E-35 8.9E-40 296.3 18.1 93 374-468 80-172 (310)
4 COG5411 Phosphatidylinositol 5 100.0 1.4E-30 3E-35 270.0 13.4 189 80-482 15-207 (460)
5 KOG0565 Inositol polyphosphate 99.8 3E-20 6.4E-25 168.1 10.1 105 375-480 2-106 (145)
6 PTZ00312 inositol-1,4,5-tripho 97.2 0.00048 1E-08 70.5 5.7 47 417-463 65-120 (356)
7 PRK13911 exodeoxyribonuclease 93.3 0.034 7.4E-07 55.4 1.1 41 103-147 2-42 (250)
8 COG0708 XthA Exonuclease III [ 89.3 0.068 1.5E-06 54.2 -1.5 33 103-140 2-35 (261)
9 PF03372 Exo_endo_phos: Endonu 86.7 1.9 4.2E-05 39.3 6.4 60 385-446 72-134 (249)
10 TIGR03395 sphingomy sphingomye 86.2 2.7 5.9E-05 42.7 7.8 76 386-464 90-169 (283)
11 PRK11756 exonuclease III; Prov 78.2 0.58 1.3E-05 46.1 -0.5 34 103-140 2-35 (268)
12 TIGR00633 xth exodeoxyribonucl 78.1 0.84 1.8E-05 43.9 0.6 34 103-140 2-36 (255)
13 TIGR00195 exoDNase_III exodeox 73.1 1.2 2.6E-05 43.4 0.3 34 103-140 2-35 (254)
14 PRK15251 cytolethal distending 72.6 2.7 5.9E-05 43.1 2.6 43 102-146 25-71 (271)
15 PRK05421 hypothetical protein; 67.4 3.1 6.7E-05 41.4 1.7 36 101-140 43-78 (263)
16 PRK05421 hypothetical protein; 60.2 16 0.00035 36.4 5.3 42 420-463 135-177 (263)
17 KOG2756 Predicted Mg2+-depende 50.7 54 0.0012 34.3 7.2 38 424-463 196-233 (349)
18 TIGR02616 tnaC_leader tryptoph 37.1 7.1 0.00015 26.6 -1.0 16 23-38 6-21 (26)
19 cd01251 PH_centaurin_alpha Cen 33.0 32 0.0007 29.6 2.2 34 136-170 69-102 (103)
20 PF08053 Tna_leader: Tryptopha 31.7 9.1 0.0002 25.1 -1.1 14 23-36 8-21 (24)
21 PRK09806 tryptophanase leader 27.4 11 0.00024 25.1 -1.2 15 23-37 8-22 (26)
22 PTZ00297 pantothenate kinase; 24.5 38 0.00082 42.4 1.5 38 101-140 10-51 (1452)
23 KOG2756 Predicted Mg2+-depende 24.2 53 0.0012 34.3 2.3 44 101-161 99-151 (349)
24 KOG1976 Inositol polyphosphate 20.0 68 0.0015 34.0 2.1 48 417-464 154-210 (391)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=7e-99 Score=803.62 Aligned_cols=434 Identities=43% Similarity=0.731 Sum_probs=342.6
Q ss_pred cccccCCCCCccchHHHHHHhhcccCCCCCCCCCCCCCCCCCCCchhhhhhcccc--------Ccc-----ccccccCC-
Q 011586 7 TQRSKHHQPELFWPRVVMRKWLNISTKDSDFSADTDEDDIDGDSDTEEFAQSQFR--------VPK-----EEEAQYDP- 72 (482)
Q Consensus 7 m~~~~~k~~~~~Wp~~v~rKwlNi~~k~~df~aD~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~- 72 (482)
||.+++|++|+||||+||||||||++|++||||||++++.++|+|.+++...+.. +.. ++.+.-.+
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 8999999999999999999999999999999999998755556665554433211 010 10111000
Q ss_pred CCCCCChHHHHhhcccccccccceeeeEEEEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeeeeeCCCCcccccC
Q 011586 73 NGTSETFPRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAE 152 (482)
Q Consensus 73 ~~~~~~~~~l~r~~~et~r~eyt~~~~irIfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEIV~Lna~nvl~~~ 152 (482)
..++++..++||||+||+|+|||+.+++|||||||||||+.|+.+++|.+||..+.+||||||||||||||||+|||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 23456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHhhccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCccccCCCCCCCCcccCCCc
Q 011586 153 DSRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKP 232 (482)
Q Consensus 153 d~~~~~~We~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~ds~~~~~~~~~~~~~~~~~~~~~~~ 232 (482)
++.++++|+.+|+++||+..++.++|+|||+||||++ .|++ |++|++.|+|+ ||+.+.+..|....+.
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~----~~~e~~~~~d~------~~~~~~~~~~~~~~~~- 228 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI----VADELAEEVDS------LPLEMMNNEFIDAATG- 228 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc----hhhhhhhhccc------Chhhhccccccccccc-
Confidence 9999999999999999999999999999999999998 5555 78999999886 7777765544322211
Q ss_pred ccccccccccccccccccCCcchhhhhcccCCCccchhhhhhhhccccCCCCcchhccccccccccccccccCCCCCCCC
Q 011586 233 VKMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPP 312 (482)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~g~~w~e~p 312 (482)
+.......+++|+.++. +++ .....+.++++|+|+||+|+||||.|||+|
T Consensus 229 ------------------~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p 278 (621)
T PLN03191 229 ------------------CPSLEPERNKNIGWPEH-----SLD-------ATPQVVSSNSKLRRVFSSSARLGFKWPENP 278 (621)
T ss_pred ------------------ccccchhhccccCCccc-----ccc-------cCcccccccccceeeeccccccccCCCCCc
Confidence 11111344555554431 121 222334678999999999999999999999
Q ss_pred ccccccccccCCCcccc-------ccccccC-c-------ccccccCCCCCccc-chhHHHHHHHHhH----HHH--Hhh
Q 011586 313 LNLLTQKVLERPNSLKT-------VKSFKTS-N-------SFRRYSSFKPAVDD-MSSELALLAEIDI----ETL--MKR 370 (482)
Q Consensus 313 ~~~~~~~~~~~~~s~~~-------~~~~~~~-~-------s~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~~ 370 (482)
++|++|+...+.++++. .++.+.+ + ......+++++.+. ...+.+++++++. +.. ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
T PLN03191 279 SLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCR 358 (621)
T ss_pred cccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhc
Confidence 99999987665554432 2221211 0 00111233333332 2334556666655 333 456
Q ss_pred cCCCCEEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCCh
Q 011586 371 KRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE 450 (482)
Q Consensus 371 ~~~~~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~ 450 (482)
+....|++|.|+|||||+|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+|||||||||||++++++
T Consensus 359 ~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~ 438 (621)
T PLN03191 359 KVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAE 438 (621)
T ss_pred cCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 011586 451 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHE 482 (482)
Q Consensus 451 ~rRN~D~~eIlr~l~F~~~~~~~~p~~I~dHD 482 (482)
++||+||.+|++++.|+...+...|++|++||
T Consensus 439 ~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD 470 (621)
T PLN03191 439 QRRNADVYEIIRRTRFSSVLDTDQPQTIPSHD 470 (621)
T ss_pred HHHHHHHHHHHhccccCcccccCCCccccccc
Confidence 99999999999999998766667789999997
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-48 Score=424.19 Aligned_cols=188 Identities=39% Similarity=0.677 Sum_probs=172.3
Q ss_pred HHHHhhcccccccccceeeeEEEEEEeeecCCCCCCCCCCcccccCCC------CCCcEEEEeeeeeeeCCCCcccccCC
Q 011586 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMN------EPADIYVLGLQEIVPLTAGNIFGAED 153 (482)
Q Consensus 80 ~~l~r~~~et~r~eyt~~~~irIfvgTWNV~G~~p~~~ldL~~WL~~~------~~~DIyVlGfQEIV~Lna~nvl~~~d 153 (482)
.+|+.|.+| |+..++|+||||||||||+.+....||.+||++. .+||||||||||||+||||||+.+ +
T Consensus 522 ~~L~er~~e-----yt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~A-s 595 (1080)
T KOG0566|consen 522 KELRERRSE-----YTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSA-S 595 (1080)
T ss_pred HHHHHhhhh-----hccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceecc-C
Confidence 467777777 9999999999999999997665556899999963 369999999999999999999977 4
Q ss_pred CcchhHHHHHHHHHhhccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCccccCCCCCCCCcccCCCcc
Q 011586 154 SRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPV 233 (482)
Q Consensus 154 ~~~~~~We~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~ds~~~~~~~~~~~~~~~~~~~~~~~~ 233 (482)
+.+.+.|++.|+++||++
T Consensus 596 ~tk~~~Wee~i~~~Ln~~-------------------------------------------------------------- 613 (1080)
T KOG0566|consen 596 TTKRRFWEEKILKTLNRY-------------------------------------------------------------- 613 (1080)
T ss_pred hHHHHHHHHHHHHHhcCC--------------------------------------------------------------
Confidence 667999999999999862
Q ss_pred cccccccccccccccccCCcchhhhhcccCCCccchhhhhhhhccccCCCCcchhccccccccccccccccCCCCCCCCc
Q 011586 234 KMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPL 313 (482)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~g~~w~e~p~ 313 (482)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCccccccccccCcccccccCCCCCcccchhHHHHHHHHhHHHHHhhcCCCCEEEEEeeeecceEEEEEE
Q 011586 314 NLLTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWV 393 (482)
Q Consensus 314 ~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~SkqmvGI~L~Vfv 393 (482)
..+|++|.|.||||++|+||+
T Consensus 614 -----------------------------------------------------------~~kYvlL~s~QlvGv~L~iF~ 634 (1080)
T KOG0566|consen 614 -----------------------------------------------------------KNKYVLLRSEQLVGVCLLLFI 634 (1080)
T ss_pred -----------------------------------------------------------CCceEEEehhhhheeeEEEEE
Confidence 137999999999999999999
Q ss_pred ecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhCCCCCCCCCC
Q 011586 394 RRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIG 473 (482)
Q Consensus 394 R~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l~F~~~~~~~ 473 (482)
|.++.++|++|..++++||++|..||||||||||.++.|+|||||+|||||+.++ ++||.||++|.++++|+
T Consensus 635 r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv--~ERn~DY~tI~r~l~Fp------ 706 (1080)
T KOG0566|consen 635 RPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNV--EERNEDYKTIARKLRFP------ 706 (1080)
T ss_pred cccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccchH--hhhhhhHHHHHHhcccc------
Confidence 9999999999999999999999999999999999999999999999999999986 68999999999999997
Q ss_pred CCCCCCCCC
Q 011586 474 FPKSICDHE 482 (482)
Q Consensus 474 ~p~~I~dHD 482 (482)
++++|++||
T Consensus 707 ~Gr~I~~HD 715 (1080)
T KOG0566|consen 707 RGRMIFSHD 715 (1080)
T ss_pred CCccccCCc
Confidence 568999998
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=4.1e-35 Score=296.26 Aligned_cols=93 Identities=33% Similarity=0.573 Sum_probs=89.2
Q ss_pred CCEEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHH
Q 011586 374 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 453 (482)
Q Consensus 374 ~~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rR 453 (482)
..|.+|++.+|+||+|+||+|.++.++|+++.+.++++|++|.+||||||+|+|.+.+++||||||||+||+.+ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999987 4799
Q ss_pred HHHHHHHHHhCCCCC
Q 011586 454 NADVHEIHRRTHFRS 468 (482)
Q Consensus 454 N~D~~eIlr~l~F~~ 468 (482)
|+||.+|++++.|+.
T Consensus 158 ~~~~~~I~~~~~f~~ 172 (310)
T smart00128 158 NQDYKTILRALSFPE 172 (310)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999975
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-30 Score=269.96 Aligned_cols=189 Identities=33% Similarity=0.517 Sum_probs=167.9
Q ss_pred HHHHhhcccccccccceeeeEEEEEEeeecCCCCCCCCCCcccccCC----CCCCcEEEEeeeeeeeCCCCcccccCCCc
Q 011586 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM----NEPADIYVLGLQEIVPLTAGNIFGAEDSR 155 (482)
Q Consensus 80 ~~l~r~~~et~r~eyt~~~~irIfvgTWNV~G~~p~~~ldL~~WL~~----~~~~DIyVlGfQEIV~Lna~nvl~~~d~~ 155 (482)
..++.++++ |+..+.+.||++|+|++|+.|. .+++.||++ ...+|+||+||||+|+|+++.|+++....
T Consensus 15 ~~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~ 87 (460)
T COG5411 15 AVLRQRRSK-----YVIEKDVSIFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYD 87 (460)
T ss_pred HHHHHHhhh-----heeecceeeEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCccc
Confidence 477888877 9999999999999999998773 368999997 34699999999999999999999876445
Q ss_pred chhHHHHHHHHHhhccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCccccCCCCCCCCcccCCCcccc
Q 011586 156 PVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKM 235 (482)
Q Consensus 156 ~~~~We~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~ds~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (482)
+...|++.+..+||. .+
T Consensus 88 rl~~wes~~~~~Ln~-~~-------------------------------------------------------------- 104 (460)
T COG5411 88 RLRIWESKVLDCLNG-AQ-------------------------------------------------------------- 104 (460)
T ss_pred ccchhHHHHHHHhcc-cc--------------------------------------------------------------
Confidence 568999999888885 11
Q ss_pred cccccccccccccccCCcchhhhhcccCCCccchhhhhhhhccccCCCCcchhccccccccccccccccCCCCCCCCccc
Q 011586 236 FTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNL 315 (482)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~g~~w~e~p~~~ 315 (482)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCccccccccccCcccccccCCCCCcccchhHHHHHHHHhHHHHHhhcCCCCEEEEEeeeecceEEEEEEec
Q 011586 316 LTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRR 395 (482)
Q Consensus 316 ~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~SkqmvGI~L~VfvR~ 395 (482)
..++|.++.+.||+|+++.||.+.
T Consensus 105 --------------------------------------------------------~~eky~~l~s~q~~~~~~~vf~~~ 128 (460)
T COG5411 105 --------------------------------------------------------SDEKYSLLRSPQLGGILLRVFSLA 128 (460)
T ss_pred --------------------------------------------------------cCCceEEecchhccCcceEEeeec
Confidence 024788888999999999999999
Q ss_pred ccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhCCCCCCCCCCCC
Q 011586 396 SLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFP 475 (482)
Q Consensus 396 ~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l~F~~~~~~~~p 475 (482)
+..+.+.+|...+-+||++|..+|||||+++|.+..++||||+|||+||..+. ++|+.||..|.+.++|++ .
T Consensus 129 ~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N~--eeR~~Dy~~I~~~i~f~~------g 200 (460)
T COG5411 129 TNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNNI--EERIFDYRSIASNICFSR------G 200 (460)
T ss_pred cccceeccccccccccccceecccccccceeEEeecCCcEEEecchhcccccH--HHHHHHHHHHHHheecCC------C
Confidence 99999999999999999999999999999999999999999999999999874 789999999999999974 4
Q ss_pred CCCCCCC
Q 011586 476 KSICDHE 482 (482)
Q Consensus 476 ~~I~dHD 482 (482)
..|+|||
T Consensus 201 ~~I~~hd 207 (460)
T COG5411 201 LRIYDHD 207 (460)
T ss_pred ceecccc
Confidence 6899997
No 5
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3e-20 Score=168.13 Aligned_cols=105 Identities=45% Similarity=0.644 Sum_probs=96.4
Q ss_pred CEEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHH
Q 011586 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (482)
Q Consensus 375 ~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN 454 (482)
.|+++.+.+|+|+.+.+|++.++..++.+++++++++|++|++||||+|+|+|.++++++|||||||+||.++.+ ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999874 3499
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCC
Q 011586 455 ADVHEIHRRTHFRSHSEIGFPKSICD 480 (482)
Q Consensus 455 ~D~~eIlr~l~F~~~~~~~~p~~I~d 480 (482)
+||.+|+.++.|+.......|..|..
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~ 106 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDG 106 (145)
T ss_pred ccHHHHHhhccccccCcccccccccc
Confidence 99999999999987666666655443
No 6
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=97.22 E-value=0.00048 Score=70.53 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=41.8
Q ss_pred ccCcceeEEEEEEcCEEEEEEeccCCCCCCCCC---------hhHHHHHHHHHHHh
Q 011586 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---------ELKRNADVHEIHRR 463 (482)
Q Consensus 417 lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d---------~~rRN~D~~eIlr~ 463 (482)
++.||.+.+|+.|+++.|||||+||.++..+.+ ...|..+|..|+.+
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r 120 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE 120 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH
Confidence 688999999999999999999999999988753 23689999999965
No 7
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=93.30 E-value=0.034 Score=55.40 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred EEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeeeeeCCCCc
Q 011586 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGN 147 (482)
Q Consensus 103 fvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEIV~Lna~n 147 (482)
-+.||||||.--.....+.+||.. ..||| |+|||+ -+....
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~-~~~DI--iclQEt-K~~~~~ 42 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS-VDADV--FCIQES-KMQQEQ 42 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh-cCCCE--EEEEee-cccccc
Confidence 478999999543222357899954 45787 778999 555444
No 8
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=89.31 E-value=0.068 Score=54.22 Aligned_cols=33 Identities=33% Similarity=0.695 Sum_probs=23.4
Q ss_pred EEEeeecCCC-CCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 103 CVGTWNVGGK-LPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 103 fvgTWNV~G~-~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
-+.||||||. +.-.. +-+||.... ||| |+|||+
T Consensus 2 kI~SwNVNgiRar~~~--~~~~l~~~~-pDV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK--LLDWLEEEQ-PDV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH--HHHHHHHhC-CCE--EEEEec
Confidence 3689999994 22222 789996544 486 789999
No 9
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=86.67 E-value=1.9 Score=39.28 Aligned_cols=60 Identities=23% Similarity=0.198 Sum_probs=40.7
Q ss_pred cceEEEEEEecccccccceeEEEEEeeccc---ccccCcceeEEEEEEcCEEEEEEeccCCCCCC
Q 011586 385 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVM---GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEK 446 (482)
Q Consensus 385 vGI~L~VfvR~~l~~~Is~v~~s~V~tGl~---G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~ 446 (482)
.+..+.|+.|.++...+..........+.. ....+++.+.+++. +..|+++|+||.++..
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~ 134 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND 134 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch
Confidence 677888999987665555544443333332 23455666666666 9999999999998643
No 10
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=86.22 E-value=2.7 Score=42.69 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=50.6
Q ss_pred ceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCC----CChhHHHHHHHHHH
Q 011586 386 GIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIH 461 (482)
Q Consensus 386 GI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~----~d~~rRN~D~~eIl 461 (482)
+-.++|+-|--+......+ .. .++|. ..+.+||.+.+++.+.+..|.|+|+||.+.... .+...|..++.+|.
T Consensus 90 ~~G~~iLSr~Pi~~~~~~~-f~-~~~~~-d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~ 166 (283)
T TIGR03395 90 DGGVAIVSKWPIEEKIQYI-FN-KGCGA-DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQ 166 (283)
T ss_pred CCEEEEEECCCccccEEEE-cc-CCCCC-ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHH
Confidence 3345666665443322211 11 23333 346789999999999999999999999985321 11357999999998
Q ss_pred HhC
Q 011586 462 RRT 464 (482)
Q Consensus 462 r~l 464 (482)
+.+
T Consensus 167 ~~i 169 (283)
T TIGR03395 167 DFI 169 (283)
T ss_pred HHH
Confidence 765
No 11
>PRK11756 exonuclease III; Provisional
Probab=78.23 E-value=0.58 Score=46.15 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.5
Q ss_pred EEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 103 fvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
-|.||||+|..-.- ..|.+||.. ..||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~-~~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEK-HQPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHh-cCCCE--EEEEec
Confidence 46799999942211 136777754 45798 559998
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.10 E-value=0.84 Score=43.89 Aligned_cols=34 Identities=35% Similarity=0.588 Sum_probs=23.3
Q ss_pred EEEeeecCCCCCCCCCCc-ccccCCCCCCcEEEEeeeee
Q 011586 103 CVGTWNVGGKLPPDDLDI-DDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 103 fvgTWNV~G~~p~~~ldL-~~WL~~~~~~DIyVlGfQEI 140 (482)
-|.||||+|...... .+ .+||.. ..||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~~-~~~~~~l~~-~~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARLH-KLFLDWLKE-EQPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHhh-ccHHHHHHh-cCCCE--EEEEec
Confidence 578999999543222 34 777754 35687 668998
No 13
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=73.08 E-value=1.2 Score=43.43 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=23.0
Q ss_pred EEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 103 fvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
-|.||||+|..... ..+..||.. ..|||+ +|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~-~~~DIi--~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKE-NQPDVL--CLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHh-cCCCEE--EEEec
Confidence 47899999943222 236777754 457985 58996
No 14
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=72.59 E-value=2.7 Score=43.06 Aligned_cols=43 Identities=30% Similarity=0.524 Sum_probs=26.9
Q ss_pred EEEEeeecCCCCCCCC----CCcccccCCCCCCcEEEEeeeeeeeCCCC
Q 011586 102 ICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIVPLTAG 146 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEIV~Lna~ 146 (482)
..++|||+.|..-.++ .++...|..++++|| |-|||.=.|.+.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEags~p~~ 71 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAGSLPSS 71 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecCCCccc
Confidence 4579999999754443 122333334567898 568999555544
No 15
>PRK05421 hypothetical protein; Provisional
Probab=67.39 E-value=3.1 Score=41.45 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=21.9
Q ss_pred EEEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
.+-+-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 366789999986432211122333 455676 679999
No 16
>PRK05421 hypothetical protein; Provisional
Probab=60.18 E-value=16 Score=36.36 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=32.3
Q ss_pred cceeEEEEEE-cCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHh
Q 011586 420 KGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRR 463 (482)
Q Consensus 420 KGaVaIr~~i-~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~ 463 (482)
||++.+.+.+ .+..|.|+|+||.+.... ...|..++..|.+.
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~ 177 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQ 177 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHH
Confidence 7899999988 566899999999875332 24688888777764
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=50.67 E-value=54 Score=34.26 Aligned_cols=38 Identities=16% Similarity=0.355 Sum_probs=30.0
Q ss_pred EEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHh
Q 011586 424 SVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRR 463 (482)
Q Consensus 424 aIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~ 463 (482)
.+-..+.+..+||.++||.+-.+. ..+|.++|...+.+
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k 233 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKK 233 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHH
Confidence 455678889999999999998765 36888888766654
No 18
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=37.05 E-value=7.1 Score=26.65 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=12.8
Q ss_pred HHHHhhcccCCCCCCC
Q 011586 23 VMRKWLNISTKDSDFS 38 (482)
Q Consensus 23 v~rKwlNi~~k~~df~ 38 (482)
+..|||||-.+-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999999887763
No 19
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=32.99 E-value=32 Score=29.62 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=27.0
Q ss_pred eeeeeeeCCCCcccccCCCcchhHHHHHHHHHhhc
Q 011586 136 GLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNR 170 (482)
Q Consensus 136 GfQEIV~Lna~nvl~~~d~~~~~~We~~I~~aLn~ 170 (482)
+|+ |+.-+..-+|.+++......|.++|+++|+.
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 777 6655555567888888889999999999975
No 20
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=31.66 E-value=9.1 Score=25.10 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=10.5
Q ss_pred HHHHhhcccCCCCC
Q 011586 23 VMRKWLNISTKDSD 36 (482)
Q Consensus 23 v~rKwlNi~~k~~d 36 (482)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999877654
No 21
>PRK09806 tryptophanase leader peptide; Provisional
Probab=27.37 E-value=11 Score=25.11 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=11.0
Q ss_pred HHHHhhcccCCCCCC
Q 011586 23 VMRKWLNISTKDSDF 37 (482)
Q Consensus 23 v~rKwlNi~~k~~df 37 (482)
|-.|||||..|--|.
T Consensus 8 vtskwfnidnkivdh 22 (26)
T PRK09806 8 VTSKWFNIDNKIVDH 22 (26)
T ss_pred EeeeEEeccCeeecc
Confidence 346999998876553
No 22
>PTZ00297 pantothenate kinase; Provisional
Probab=24.53 E-value=38 Score=42.35 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEEEEeeecC----CCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVG----GKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~----G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
.|-|.||||+ +...-....+..++..-.+||| |+|||+
T Consensus 10 ~l~VlTyNv~~~~~~~~~~~~~ri~~~i~~l~~~DI--v~lQEv 51 (1452)
T PTZ00297 10 QARVLSYNFNILPRGCGGFQHERIETFLASVDAYDV--VLLQEV 51 (1452)
T ss_pred ceEEEEEEccccCCCcccccHHHHHHHHHhccCCCE--EEEecc
No 23
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=24.21 E-value=53 Score=34.32 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=29.2
Q ss_pred EEEEEeeecCCCCCCCCCCcccccC---------CCCCCcEEEEeeeeeeeCCCCcccccCCCcchhHHH
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWE 161 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~WL~---------~~~~~DIyVlGfQEIV~Lna~nvl~~~d~~~~~~We 161 (482)
-+-+-|||..| +||...+. ....||| |-|||+|| ++-.+.++|.
T Consensus 99 ~~S~~~Wnidg------Ldln~l~~RMrAv~H~i~l~sPdi--iflQEV~p---------~~y~~~~K~~ 151 (349)
T KOG2756|consen 99 MFSLITWNIDG------LDLNNLSERMRAVCHYLALYSPDV--IFLQEVIP---------PYYSYLKKRS 151 (349)
T ss_pred EEEEEEeeccc------cccchHHHHHHHHHHHHHhcCCCE--EEEeecCc---------hhhHHHHHhh
Confidence 36677999988 45666554 2457898 55899985 2334566665
No 24
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=20.04 E-value=68 Score=34.01 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=33.5
Q ss_pred ccCcceeEEEEEEcCEEEEEEeccCCCCCCCC---------ChhHHHHHHHHHHHhC
Q 011586 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDG---------DELKRNADVHEIHRRT 464 (482)
Q Consensus 417 lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~---------d~~rRN~D~~eIlr~l 464 (482)
++.||=.-.|+.|++.-|.|||.||=.-..+. .-..|-+.+.-+|.++
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el 210 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKEL 210 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHH
Confidence 46688888999999999999999993322210 1235666666666654
Done!