Query 011586
Match_columns 482
No_of_seqs 343 out of 1021
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 11:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 2E-46 6.7E-51 378.3 20.3 181 94-482 2-183 (313)
2 1i9z_A Synaptojanin, phosphati 100.0 4E-42 1.4E-46 350.7 21.6 189 80-482 10-200 (347)
3 4a9c_A Phosphatidylinositol-3, 100.0 1.3E-41 4.3E-46 343.7 19.3 92 375-468 80-171 (316)
4 2xsw_A 72 kDa inositol polypho 100.0 8.7E-37 3E-41 312.6 18.9 93 375-469 86-178 (357)
5 2imq_X Salivary nitrophorin; f 99.9 1.1E-26 3.7E-31 228.8 11.4 86 375-466 72-159 (282)
6 4fva_A 5'-tyrosyl-DNA phosphod 92.7 0.018 6.1E-07 52.2 -0.4 40 99-141 11-54 (256)
7 4f1h_A Tyrosyl-DNA phosphodies 91.1 0.036 1.2E-06 49.0 -0.3 37 101-140 3-43 (250)
8 4gz1_A Tyrosyl-DNA phosphodies 89.8 0.067 2.3E-06 48.2 0.2 37 101-140 9-49 (256)
9 3teb_A Endonuclease/exonucleas 88.4 2.3 7.9E-05 38.7 9.6 47 417-465 120-166 (266)
10 4gew_A 5'-tyrosyl-DNA phosphod 87.3 0.12 4.1E-06 52.0 0.2 41 98-141 116-160 (362)
11 4gz1_A Tyrosyl-DNA phosphodies 85.8 3.7 0.00013 36.6 9.3 48 415-464 97-144 (256)
12 4fva_A 5'-tyrosyl-DNA phosphod 85.6 5 0.00017 35.8 10.0 79 376-462 68-146 (256)
13 4gew_A 5'-tyrosyl-DNA phosphod 85.0 3.6 0.00012 41.2 9.7 82 374-463 172-253 (362)
14 1ako_A Exonuclease III; AP-end 84.4 4.1 0.00014 37.1 9.0 70 385-463 61-135 (268)
15 2ei9_A Non-LTR retrotransposon 84.3 0.11 3.7E-06 49.2 -1.8 35 102-140 8-42 (240)
16 2jc5_A Exodeoxyribonuclease; h 83.8 0.11 3.8E-06 47.4 -1.9 36 102-140 2-37 (259)
17 1ako_A Exonuclease III; AP-end 83.6 0.11 3.7E-06 47.8 -2.0 34 103-140 2-35 (268)
18 3g91_A MTH0212, exodeoxyribonu 82.0 0.1 3.5E-06 48.7 -3.0 36 102-140 4-39 (265)
19 1zwx_A SMCL, sphingomyelinase- 80.3 2 6.9E-05 40.3 5.4 48 417-464 128-179 (301)
20 1vyb_A ORF2 contains A reverse 79.5 0.2 6.9E-06 45.0 -1.8 37 101-140 7-44 (238)
21 3l1w_A Uncharacterized protein 78.6 7 0.00024 35.6 8.4 76 385-465 70-153 (257)
22 2voa_A AF_EXO, XTHA, exodeoxyr 77.9 0.27 9.3E-06 45.0 -1.5 35 102-140 2-36 (257)
23 2o3h_A DNA-(apurinic or apyrim 77.3 0.2 6.9E-06 46.9 -2.6 38 101-141 28-65 (285)
24 2ddr_A Sphingomyelin phosphodi 77.0 3.1 0.0001 39.0 5.5 48 417-464 128-179 (306)
25 1hd7_A DNA-(apurinic or apyrim 75.6 0.25 8.4E-06 48.0 -2.6 37 101-140 61-97 (318)
26 3g6s_A Putative endonuclease/e 75.5 1.2 4E-05 41.2 2.2 37 101-141 3-48 (267)
27 3i41_A Beta-hemolysin; beta to 75.4 3.2 0.00011 40.2 5.4 49 416-464 146-198 (317)
28 3teb_A Endonuclease/exonucleas 73.8 0.39 1.3E-05 44.0 -1.6 65 102-171 4-72 (266)
29 3l1w_A Uncharacterized protein 72.0 0.61 2.1E-05 42.8 -0.7 36 103-141 2-45 (257)
30 2j63_A AP-endonuclease; base e 71.9 0.32 1.1E-05 51.2 -3.0 37 101-140 149-188 (467)
31 2jc4_A Exodeoxyribonuclease II 71.2 0.35 1.2E-05 44.0 -2.6 34 103-140 2-35 (256)
32 2f1n_A CDT B, cytolethal diste 70.9 0.98 3.4E-05 44.6 0.4 39 101-141 15-57 (262)
33 1wdu_A TRAS1 ORF2P; four-layer 69.5 0.38 1.3E-05 44.3 -2.7 35 102-140 20-54 (245)
34 4f1h_A Tyrosyl-DNA phosphodies 69.0 12 0.00041 32.5 7.0 44 419-464 95-138 (250)
35 2ddr_A Sphingomyelin phosphodi 68.7 3.7 0.00013 38.4 3.9 35 101-140 9-54 (306)
36 3mpr_A Putative endonuclease/e 67.0 0.76 2.6E-05 43.9 -1.3 39 100-140 5-52 (298)
37 1sr4_B CDT B, cytolethal diste 66.2 2.1 7.1E-05 42.1 1.7 40 103-144 6-49 (261)
38 3g6s_A Putative endonuclease/e 65.6 8.9 0.0003 35.2 5.8 42 418-463 114-157 (267)
39 3mpr_A Putative endonuclease/e 62.4 11 0.00037 35.7 5.8 85 375-464 66-162 (298)
40 1zwx_A SMCL, sphingomyelinase- 58.1 4.8 0.00017 37.6 2.5 38 102-141 11-56 (301)
41 3i41_A Beta-hemolysin; beta to 44.7 2.9 9.9E-05 40.6 -1.5 37 101-140 29-74 (317)
42 2jc4_A Exodeoxyribonuclease II 39.7 1.1E+02 0.0037 27.2 8.4 36 424-461 91-128 (256)
43 1wdu_A TRAS1 ORF2P; four-layer 39.7 44 0.0015 30.2 5.9 44 418-464 101-144 (245)
44 2a40_B Deoxyribonuclease-1; WA 23.7 78 0.0027 29.0 4.6 69 373-445 60-139 (260)
45 1vyb_A ORF2 contains A reverse 20.0 3.2E+02 0.011 23.6 7.8 24 422-445 97-120 (238)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=2e-46 Score=378.29 Aligned_cols=181 Identities=29% Similarity=0.562 Sum_probs=163.7
Q ss_pred cceeeeEEEEEEeeecCCCCCCCCCCcccccCC-CCCCcEEEEeeeeeeeCCCCcccccCCCcchhHHHHHHHHHhhccC
Q 011586 94 YINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM-NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNRIR 172 (482)
Q Consensus 94 yt~~~~irIfvgTWNV~G~~p~~~ldL~~WL~~-~~~~DIyVlGfQEIV~Lna~nvl~~~d~~~~~~We~~I~~aLn~~~ 172 (482)
||..+++|||||||||||+.|++ +|.+||.. ..+||||||||||| +|++++++.. ++.....|+++|+++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~-~~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFH-DTPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTC-CCHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhccc-CcchHHHHHHHHHHhcCC--
Confidence 89999999999999999998864 68999986 56899999999999 8999998764 456689999999887742
Q ss_pred CCCCcccccCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccccccccCC
Q 011586 173 HTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDM 252 (482)
Q Consensus 173 ~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (482)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhcccCCCccchhhhhhhhccccCCCCcchhccccccccccccccccCCCCCCCCccccccccccCCCccccccc
Q 011586 253 PAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPNSLKTVKS 332 (482)
Q Consensus 253 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~g~~w~e~p~~~~~~~~~~~~~s~~~~~~ 332 (482)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccccCCCCCcccchhHHHHHHHHhHHHHHhhcCCCCEEEEEeeeecceEEEEEEecccccccceeEEEEEeec
Q 011586 333 FKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVG 412 (482)
Q Consensus 333 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tG 412 (482)
..+|++|+++||+||+|+||||+++.++|++|++++||||
T Consensus 76 ----------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG 115 (313)
T 3mtc_A 76 ----------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115 (313)
T ss_dssp ----------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECS
T ss_pred ----------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeeccc
Confidence 1269999999999999999999999999999999999999
Q ss_pred ccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 011586 413 VMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHE 482 (482)
Q Consensus 413 l~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l~F~~~~~~~~p~~I~dHD 482 (482)
+||++||||||+|||.+++|+|||||||||||+++ .++||+||.+|++++.|++......|.+|.+||
T Consensus 116 ~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d 183 (313)
T 3mtc_A 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPSLPPLTISNHD 183 (313)
T ss_dssp GGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSS
T ss_pred ccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCCccCCccccCCc
Confidence 99999999999999999999999999999999987 589999999999999998765555678999997
No 2
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=4e-42 Score=350.69 Aligned_cols=189 Identities=32% Similarity=0.563 Sum_probs=159.5
Q ss_pred HHHHhhcccccccccceeeeEEEEEEeeecCCCCCCCCCCcccccCC--CCCCcEEEEeeeeeeeCCCCcccccCCCcch
Q 011586 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM--NEPADIYVLGLQEIVPLTAGNIFGAEDSRPV 157 (482)
Q Consensus 80 ~~l~r~~~et~r~eyt~~~~irIfvgTWNV~G~~p~~~ldL~~WL~~--~~~~DIyVlGfQEIV~Lna~nvl~~~d~~~~ 157 (482)
.+|++|..| |+..++++||||||||||+.|+ .||.+||.+ ..+||||||||||||+|++++|++. ++.+.
T Consensus 10 ~~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~ 81 (347)
T 1i9z_A 10 HELRKRENE-----FSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKR 81 (347)
T ss_dssp HHHHHTGGG-----TEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHH
T ss_pred HHHHHHHHh-----cCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhH
Confidence 367778777 9999999999999999999884 469999986 3789999999999999999999865 66778
Q ss_pred hHHHHHHHHHhhccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCccccCCCCCCCCcccCCCcccccc
Q 011586 158 SKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFT 237 (482)
Q Consensus 158 ~~We~~I~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (482)
..|+++|+++|+...+
T Consensus 82 ~~w~~~i~~~L~~~~~---------------------------------------------------------------- 97 (347)
T 1i9z_A 82 REWESCVKRLLNGKCT---------------------------------------------------------------- 97 (347)
T ss_dssp HHHHHHHHHHHHHTCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccc----------------------------------------------------------------
Confidence 9999999999986210
Q ss_pred cccccccccccccCCcchhhhhcccCCCccchhhhhhhhccccCCCCcchhccccccccccccccccCCCCCCCCccccc
Q 011586 238 NYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLT 317 (482)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~g~~w~e~p~~~~~ 317 (482)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccCcccccccCCCCCcccchhHHHHHHHHhHHHHHhhcCCCCEEEEEeeeecceEEEEEEeccc
Q 011586 318 QKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSL 397 (482)
Q Consensus 318 ~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lV~SkqmvGI~L~VfvR~~l 397 (482)
.+..|++|.++||+|++|+||+|.++
T Consensus 98 ------------------------------------------------------~~~~Y~~v~s~~l~g~~L~Vfvr~~~ 123 (347)
T 1i9z_A 98 ------------------------------------------------------SGPGYVQLRSGQLVGTALMIFCKESC 123 (347)
T ss_dssp ------------------------------------------------------SSCCEEEEEEEEETTEEEEEEEEGGG
T ss_pred ------------------------------------------------------CCCceeEEEEeeccceEEEEEEehHh
Confidence 02479999999999999999999999
Q ss_pred ccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhCCCCCCCCCCCCCC
Q 011586 398 RRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKS 477 (482)
Q Consensus 398 ~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l~F~~~~~~~~p~~ 477 (482)
.++|++|++++|+||++|++||||||+|+|.+++++||||||||+||+.+ .++||+||.+|++++.|.. +.+
T Consensus 124 ~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~------~~~ 195 (347)
T 1i9z_A 124 LPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR------GRS 195 (347)
T ss_dssp GGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG------GCC
T ss_pred hhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc------ccc
Confidence 99999999999999999999999999999999999999999999999986 4689999999999999964 346
Q ss_pred CCCCC
Q 011586 478 ICDHE 482 (482)
Q Consensus 478 I~dHD 482 (482)
|.+||
T Consensus 196 i~~~d 200 (347)
T 1i9z_A 196 IFNHD 200 (347)
T ss_dssp TTSSS
T ss_pred cccCc
Confidence 77775
No 3
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.3e-41 Score=343.69 Aligned_cols=92 Identities=30% Similarity=0.474 Sum_probs=81.8
Q ss_pred CEEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHH
Q 011586 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (482)
Q Consensus 375 ~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN 454 (482)
.|++|+++|||||+|+||+|+++.++|++|++++||||++|++||||||+|+|.+++|+|||||||||||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999986 58999
Q ss_pred HHHHHHHHhCCCCC
Q 011586 455 ADVHEIHRRTHFRS 468 (482)
Q Consensus 455 ~D~~eIlr~l~F~~ 468 (482)
+||.+|++++.|+.
T Consensus 158 ~d~~~I~~~l~f~~ 171 (316)
T 4a9c_A 158 QNYLDILRLLSLGD 171 (316)
T ss_dssp HHHHHHHHHCCC--
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999999964
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.7e-37 Score=312.60 Aligned_cols=93 Identities=25% Similarity=0.397 Sum_probs=88.5
Q ss_pred CEEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHH
Q 011586 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (482)
Q Consensus 375 ~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN 454 (482)
.|+++.+.+|+|++|+||+|+++.++|+++++++|+||++|++||||||+|+|.+++|+||||||||+||+++ .++||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5778889999999999999999999999999999999999999999999999999999999999999999986 57999
Q ss_pred HHHHHHHHhCCCCCC
Q 011586 455 ADVHEIHRRTHFRSH 469 (482)
Q Consensus 455 ~D~~eIlr~l~F~~~ 469 (482)
+||.+|++++.|++.
T Consensus 164 ~d~~~I~~~l~f~~~ 178 (357)
T 2xsw_A 164 LDYTRTVQALVLPRN 178 (357)
T ss_dssp HHHHHHHHHCCCCSS
T ss_pred HHHHHHHHHhccccc
Confidence 999999999999753
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.93 E-value=1.1e-26 Score=228.80 Aligned_cols=86 Identities=9% Similarity=0.182 Sum_probs=74.9
Q ss_pred CEEEEEe--eeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhH
Q 011586 375 SYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 452 (482)
Q Consensus 375 ~Y~lV~S--kqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~r 452 (482)
.|++|.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||||+++|.+++++||||||||+||+.+. ++
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~--~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS--TN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT--TS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH--HH
Confidence 4555555 7899999999999999999988765 56778899999999999999999999999999997653 57
Q ss_pred HHHHHHHHHHhCCC
Q 011586 453 RNADVHEIHRRTHF 466 (482)
Q Consensus 453 RN~D~~eIlr~l~F 466 (482)
||+|++.|++++.+
T Consensus 146 R~~~~~~I~~~~~~ 159 (282)
T 2imq_X 146 TKYAYDTRLDYSKK 159 (282)
T ss_dssp SSSSCCGGGCTTSS
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999998765
No 6
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=92.74 E-value=0.018 Score=52.16 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=24.8
Q ss_pred eEEEEEEeeecCCCCCCCCC----CcccccCCCCCCcEEEEeeeeee
Q 011586 99 EVRICVGTWNVGGKLPPDDL----DIDDWIDMNEPADIYVLGLQEIV 141 (482)
Q Consensus 99 ~irIfvgTWNV~G~~p~~~l----dL~~WL~~~~~~DIyVlGfQEIV 141 (482)
..++-|.||||+|....... -|.+||. ...||| |+|||+.
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv~ 54 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK-NVNPDI--LFLQEVV 54 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEEC
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEecC
Confidence 34688999999985332100 1334443 345895 7899983
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=91.12 E-value=0.036 Score=48.97 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=22.7
Q ss_pred EEEEEeeecCCCCCCCC----CCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
++-|.||||+|..+... ..|.+||. ...||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLA-LYTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEeC
Confidence 46678999998533210 01344553 345796 789998
No 8
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=89.79 E-value=0.067 Score=48.21 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred EEEEEeeecCCCCCCCC----CCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
.+-|-||||+|...... ..|.+||. ...||| |+|||+
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv 49 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLA-LYSPDV--VFLQEV 49 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHH-HcCCCE--EEEEcC
Confidence 47788999998532110 01344443 345796 789997
No 9
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=88.38 E-value=2.3 Score=38.71 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred ccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhCC
Q 011586 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH 465 (482)
Q Consensus 417 lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l~ 465 (482)
...++.+.+++.+.+..|+++|+||.+..... ..|..++..|++.+.
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~r~~q~~~l~~~~~ 166 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCET--EDMGKNIQTILNRTQ 166 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTT--CCHHHHHHHHHTSSC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCCh--HHHHHHHHHHHHHHh
Confidence 45689999999999999999999999885432 468999999988753
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=87.30 E-value=0.12 Score=52.05 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=26.0
Q ss_pred eeEEEEEEeeecCCCCCCCC----CCcccccCCCCCCcEEEEeeeeee
Q 011586 98 KEVRICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIV 141 (482)
Q Consensus 98 ~~irIfvgTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEIV 141 (482)
...++-|-||||+|...... .-|.+||. ...||| |+|||+.
T Consensus 116 ~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~-~~~PDI--V~LQEv~ 160 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK-NVNPDI--LFLQEVV 160 (362)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEEC
T ss_pred CCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEcCC
Confidence 35578889999999532110 01345663 346796 7899983
No 11
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=85.76 E-value=3.7 Score=36.56 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=38.5
Q ss_pred ccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhC
Q 011586 415 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRT 464 (482)
Q Consensus 415 G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l 464 (482)
+....++.+.+.+.+.+..|+++|+||.++... ...|..++..|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l 144 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKM 144 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHH
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhh
Confidence 445567889999999999999999999987654 356888888887754
No 12
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=85.64 E-value=5 Score=35.83 Aligned_cols=79 Identities=14% Similarity=0.048 Sum_probs=49.4
Q ss_pred EEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHH
Q 011586 376 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNA 455 (482)
Q Consensus 376 Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~ 455 (482)
|.......-.+....|++++.+ .......+. +.+.-..++.+.+.+.+.+..|.++|+||.+.... ...|..
T Consensus 68 ~~~~~~~~~~~~g~~il~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~ 139 (256)
T 4fva_A 68 YKIYYSNKGCQYYTAILVSKMF----DVEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCA 139 (256)
T ss_dssp EEEEESSTTSSSEEEEEEETTC----EEEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHH
T ss_pred ceEeecCCCCCcceEEEEeecc----cceeccccc--CCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHH
Confidence 3344444445556677777643 222233332 22333456788899999999999999999987654 345666
Q ss_pred HHHHHHH
Q 011586 456 DVHEIHR 462 (482)
Q Consensus 456 D~~eIlr 462 (482)
++..++.
T Consensus 140 q~~~~~~ 146 (256)
T 4fva_A 140 QFGFCMD 146 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 13
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=84.96 E-value=3.6 Score=41.18 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=54.6
Q ss_pred CCEEEEEeeeecceEEEEEEecccccccceeEEEEEeecccccccCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHH
Q 011586 374 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 453 (482)
Q Consensus 374 ~~Y~lV~SkqmvGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rR 453 (482)
..|......+-.+-.+.||.|+.+ ..+........ +.....+++.+.+.+.+..|+++|+||.++... ..+|
T Consensus 172 ~~y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~~~--~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~--~~~R 243 (362)
T 4gew_A 172 SLYKIYYSNKGCQYYTAILVSKMF----DVEKHDVIHFQ--NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQR 243 (362)
T ss_dssp GTEEEEESSTTSSSEEEEEEETTE----EEEEEEEEECT--TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHH
T ss_pred CCceEEeCCCCCCceEEEEEeccC----ccccccccCCC--CCcccceEEEEEEEECCEEEEEEEecCCccccc--hhHH
Confidence 356666666666777888888632 22222222221 222346788889999999999999999887543 3578
Q ss_pred HHHHHHHHHh
Q 011586 454 NADVHEIHRR 463 (482)
Q Consensus 454 N~D~~eIlr~ 463 (482)
..++..|+..
T Consensus 244 ~~Q~~~l~~~ 253 (362)
T 4gew_A 244 CAQFGFCMDK 253 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 14
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=84.37 E-value=4.1 Score=37.05 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=44.2
Q ss_pred cceEEEEEEecccccccceeEEEEEeecccc--cccCcceeEEEEEEcCEEEEEEeccCCCCCCCCC---hhHHHHHHHH
Q 011586 385 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVMG--FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---ELKRNADVHE 459 (482)
Q Consensus 385 vGI~L~VfvR~~l~~~Is~v~~s~V~tGl~G--~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d---~~rRN~D~~e 459 (482)
.+..+.||.|..+.. + ..++.+ ....++.+.+.+.+.+..|+++|+||.++....+ ...|...+..
T Consensus 61 ~~~G~ailsr~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~ 131 (268)
T 1ako_A 61 GHYGVALLTKETPIA----V-----RRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQN 131 (268)
T ss_dssp TEEEEEEEESSCCSE----E-----EESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHH
T ss_pred CcceEEEEEecCcce----e-----eeCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHH
Confidence 334566777765421 1 123322 2345788999999998999999999998764221 1346676666
Q ss_pred HHHh
Q 011586 460 IHRR 463 (482)
Q Consensus 460 Ilr~ 463 (482)
|.+.
T Consensus 132 l~~~ 135 (268)
T 1ako_A 132 LQNY 135 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 15
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=84.31 E-value=0.11 Score=49.24 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
+-|.||||||..-..+. |.+||.. ..||| |++||+
T Consensus 8 mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 67899999995332222 7888854 45787 678998
No 16
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=83.75 E-value=0.11 Score=47.44 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=23.6
Q ss_pred EEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
+-|.||||+|........|.+||. ...||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIA-ASGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHH-HTTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHH-hcCCCE--EEEEEe
Confidence 568899999843211113666764 346897 778999
No 17
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=83.64 E-value=0.11 Score=47.77 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=21.8
Q ss_pred EEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 103 fvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
-|.||||+|....- ..|.+||. ...||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~Di--i~LQE~ 35 (268)
T 1ako_A 2 KFVSFNINGLRARP-HQLEAIVE-KHQPDV--IGLQET 35 (268)
T ss_dssp EEEEEECSCGGGCH-HHHHHHHH-HHCCSE--EEEECC
T ss_pred EEEEEehhHHHHHH-HHHHHHHH-HcCCCE--EEEEec
Confidence 57899999853211 12455553 345785 789998
No 18
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=81.96 E-value=0.1 Score=48.72 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=23.6
Q ss_pred EEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
+-|.||||+|........|.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999432111136777743 45787 678998
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=80.31 E-value=2 Score=40.28 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=37.7
Q ss_pred ccCcceeEEEEEEcCEEEEEEeccCCCCCCC----CChhHHHHHHHHHHHhC
Q 011586 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRT 464 (482)
Q Consensus 417 lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~----~d~~rRN~D~~eIlr~l 464 (482)
..++|++.+.+.+.+..|+++|+||.++... .....|..++..|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999987432 12456888888876643
No 20
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=79.46 E-value=0.2 Score=44.97 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred EEEEEeeecCCCCCCCC-CCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDD-LDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~-ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
.+-|.||||+|...... ..|.+||.. ..||| |+|||+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~-~~~DI--v~LQE~ 44 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS-QDPSV--CCIQET 44 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH-HCCSE--EEEECC
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH-cCCCE--EEEecc
Confidence 36688999999542210 124556642 45787 789999
No 21
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=78.62 E-value=7 Score=35.62 Aligned_cols=76 Identities=16% Similarity=-0.003 Sum_probs=48.6
Q ss_pred cceEEEEEEecccccccceeEEEE------EeecccccccCcceeEEEEEEc--CEEEEEEeccCCCCCCCCChhHHHHH
Q 011586 385 VGIFLTIWVRRSLRRHIQNVRVST------VGVGVMGFIGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNAD 456 (482)
Q Consensus 385 vGI~L~VfvR~~l~~~Is~v~~s~------V~tGl~G~lGNKGaVaIr~~i~--~TsfcFVn~HLaAge~~~d~~rRN~D 456 (482)
.|..+.||.|++..+.+..-...- .+.|. +....++++.+.+... +..|+++|+||.+.. ...|..+
T Consensus 70 ~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q 144 (257)
T 3l1w_A 70 QGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAG 144 (257)
T ss_dssp CSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHH
T ss_pred CCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHH
Confidence 456778888876433332211100 11121 2345678888888874 679999999998863 3578899
Q ss_pred HHHHHHhCC
Q 011586 457 VHEIHRRTH 465 (482)
Q Consensus 457 ~~eIlr~l~ 465 (482)
+..|++.+.
T Consensus 145 ~~~l~~~i~ 153 (257)
T 3l1w_A 145 MTVILEELH 153 (257)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 888887654
No 22
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=77.86 E-value=0.27 Score=45.00 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=22.1
Q ss_pred EEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
+-|.||||+|..... ..|.+||. ...||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~-~~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLK-ENKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHH-HHCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHh-hcCCCE--EEEEEe
Confidence 467899999853211 12344553 345787 789999
No 23
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=77.26 E-value=0.2 Score=46.95 Aligned_cols=38 Identities=34% Similarity=0.500 Sum_probs=24.1
Q ss_pred EEEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeeee
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIV 141 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEIV 141 (482)
.+-|.||||+|........|..||. ...||| |+|||+-
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~-~~~~DI--i~LQE~~ 65 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQETK 65 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECCC
T ss_pred ceEEEEEecccChhhhhhhHHHHHH-hcCCCE--EEEEEee
Confidence 4778999999843211112566663 345785 7899993
No 24
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=76.96 E-value=3.1 Score=39.02 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=36.4
Q ss_pred ccCcceeEEEEEEcCEEEEEEeccCCCCCCC----CChhHHHHHHHHHHHhC
Q 011586 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRT 464 (482)
Q Consensus 417 lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~----~d~~rRN~D~~eIlr~l 464 (482)
...+|++.+.+.+.+..|.|+|+||.+.... .....|..++..|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988421 12467888888876543
No 25
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=75.60 E-value=0.25 Score=47.96 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=24.2
Q ss_pred EEEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
.+-|.||||+|........|.+||. ...||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~-~~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVK-EEAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHH-HHCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHH-hhCCCE--EEEEEc
Confidence 4778899999843211113566664 345787 789999
No 26
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=75.50 E-value=1.2 Score=41.24 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=23.3
Q ss_pred EEEEEeeecCCCCCCCCCCcccccC---------CCCCCcEEEEeeeeee
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEIV 141 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~WL~---------~~~~~DIyVlGfQEIV 141 (482)
.|-|.||||.+..+... -..|-. ....||| |||||+-
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv~ 48 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEVL 48 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESBC
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecCC
Confidence 46789999998654321 123322 1346786 7889993
No 27
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=75.37 E-value=3.2 Score=40.19 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=39.5
Q ss_pred cccCcceeEEEEEEcCEEEEEEeccCCCCCCC----CChhHHHHHHHHHHHhC
Q 011586 416 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRT 464 (482)
Q Consensus 416 ~lGNKGaVaIr~~i~~TsfcFVn~HLaAge~~----~d~~rRN~D~~eIlr~l 464 (482)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999986531 12578999988887653
No 28
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=73.83 E-value=0.39 Score=43.98 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=34.7
Q ss_pred EEEEeeecCCCCCCCC-CC---cccccCCCCCCcEEEEeeeeeeeCCCCcccccCCCcchhHHHHHHHHHhhcc
Q 011586 102 ICVGTWNVGGKLPPDD-LD---IDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNRI 171 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~-ld---L~~WL~~~~~~DIyVlGfQEIV~Lna~nvl~~~d~~~~~~We~~I~~aLn~~ 171 (482)
+.|.||||.+...... .+ |..+|. ...||| |+|||+-.......+... -....|...+.+.|...
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~-~~~~DI--i~LQEv~~~~~~~~~~~~--~~~d~~~~~~~~~l~~~ 72 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIA-EKQYDV--IAMQEVNQLMNNKIIFDD--IREENYAWVLLETLQKY 72 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHH-HHTCSE--EEEEEEEEETTSCEEETT--EETTCHHHHHHHHHTTT
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHH-hcCCCE--EEEEEccccccccccccc--cccccHHHHHHHHHHHh
Confidence 6789999976432210 01 122332 245786 779999655544432211 12334655667777753
No 29
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=72.03 E-value=0.61 Score=42.81 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=21.6
Q ss_pred EEEeeecCCCCCCCCC--------CcccccCCCCCCcEEEEeeeeee
Q 011586 103 CVGTWNVGGKLPPDDL--------DIDDWIDMNEPADIYVLGLQEIV 141 (482)
Q Consensus 103 fvgTWNV~G~~p~~~l--------dL~~WL~~~~~~DIyVlGfQEIV 141 (482)
-|.||||.+..+.... -|.++|. ...||| |||||+-
T Consensus 2 rv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv~ 45 (257)
T 3l1w_A 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEVR 45 (257)
T ss_dssp EEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEEC
T ss_pred EEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCCC
Confidence 5889999986543211 0122221 236787 7899993
No 30
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=71.87 E-value=0.32 Score=51.19 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=23.9
Q ss_pred EEEEEeeecCCCCCCC--C-CCcccccCCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPD--D-LDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~--~-ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
.+-|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778899999932110 0 125677743 35786 789998
No 31
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=71.23 E-value=0.35 Score=44.04 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=21.6
Q ss_pred EEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 103 fvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
-|.||||+|-...- ..|.++|. ...||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLA-DNPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHH-SSCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHH-hcCCCE--EEEEee
Confidence 47899999842111 12455553 356797 788998
No 32
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=70.89 E-value=0.98 Score=44.61 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=25.5
Q ss_pred EEEEEeeecCCCCCCCC----CCcccccCCCCCCcEEEEeeeeee
Q 011586 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIV 141 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~----ldL~~WL~~~~~~DIyVlGfQEIV 141 (482)
.+-|+|||+-|..++.+ .+|..-+....++|| |++||+=
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEag 57 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEAG 57 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEEC
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeecC
Confidence 35689999999665333 234443333456998 7789994
No 33
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=69.50 E-value=0.38 Score=44.32 Aligned_cols=35 Identities=20% Similarity=-0.025 Sum_probs=23.7
Q ss_pred EEEEeeecCCCCCCCCCCcccccCCCCCCcEEEEeeeee
Q 011586 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~ldL~~WL~~~~~~DIyVlGfQEI 140 (482)
+-|.||||+|.....+ .|.+|+.. ..||| |++||+
T Consensus 20 lri~s~Nv~~~~~~~~-~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 20 YRVLQANLQRKKLATA-ELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp EEEEEEECTTCHHHHH-HHHHHHHH-HTCSE--EEEESC
T ss_pred eeeeeeeccccHHHHH-HHHHHHhh-cCCCE--EEEEcc
Confidence 6788999998432111 35666643 45786 889998
No 34
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=68.99 E-value=12 Score=32.47 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=35.4
Q ss_pred CcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhC
Q 011586 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRT 464 (482)
Q Consensus 419 NKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l 464 (482)
..+.+.+.+.+.+..|+++++||.++... ...|..++.+|++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKI 138 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHH
T ss_pred cceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHH
Confidence 45677888889999999999999987654 357888888887754
No 35
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=68.74 E-value=3.7 Score=38.42 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=22.2
Q ss_pred EEEEEeeecCCCCCCCCCCcccc--------c---CCCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDW--------I---DMNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~W--------L---~~~~~~DIyVlGfQEI 140 (482)
.+-|.||||.+..+.. ...| + .....||| |+|||+
T Consensus 9 ~lrv~t~Ni~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~DI--v~LQEv 54 (306)
T 2ddr_A 9 TLKVMTHNVYMLSTNL---YPNWGQTERADLIGAADYIKNQDV--VILNEV 54 (306)
T ss_dssp EEEEEEEEEEECCTTT---CTTSCHHHHHHHHHHCSTTCSCSE--EEEEEE
T ss_pred EEEEEEEECccCcccc---cCCCCHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5778999999853211 1223 1 12357897 789999
No 36
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=66.96 E-value=0.76 Score=43.86 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=22.8
Q ss_pred EEEEEEeeecCCCCCCCCCCcccccC---------CCCCCcEEEEeeeee
Q 011586 100 VRICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 140 (482)
Q Consensus 100 irIfvgTWNV~G~~p~~~ldL~~WL~---------~~~~~DIyVlGfQEI 140 (482)
-.|-|.||||....+........|-. ....||| |||||+
T Consensus 5 ~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DI--v~LQEv 52 (298)
T 3mpr_A 5 TSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDI--FGTQEC 52 (298)
T ss_dssp EEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSE--EEEESB
T ss_pred CcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence 46889999997644321100123411 2346895 889999
No 37
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=66.24 E-value=2.1 Score=42.11 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=27.4
Q ss_pred EEEeeecCCCCCCC----CCCcccccCCCCCCcEEEEeeeeeeeCC
Q 011586 103 CVGTWNVGGKLPPD----DLDIDDWIDMNEPADIYVLGLQEIVPLT 144 (482)
Q Consensus 103 fvgTWNV~G~~p~~----~ldL~~WL~~~~~~DIyVlGfQEIV~Ln 144 (482)
-|+|||+-|....+ +..+..||.....||| |.+||+--+.
T Consensus 6 kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~p 49 (261)
T 1sr4_B 6 KVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSLP 49 (261)
T ss_dssp CEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSCC
T ss_pred EEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCCC
Confidence 48999999954433 1135677766578998 5679996553
No 38
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=65.61 E-value=8.9 Score=35.22 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=32.0
Q ss_pred cCcceeEEEEEE--cCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHh
Q 011586 418 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRR 463 (482)
Q Consensus 418 GNKGaVaIr~~i--~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~ 463 (482)
.+++++.+.|.. .+..|+++|+||.+.. ...|..+...|++.
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~ 157 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRK 157 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHH
Confidence 467788888884 6789999999998754 35787777776654
No 39
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=62.40 E-value=11 Score=35.74 Aligned_cols=85 Identities=11% Similarity=0.000 Sum_probs=49.8
Q ss_pred CEEEEEeee----ecceEEEEEEecccccccceeEEE------EEeecccccccCcceeEEEEE--EcCEEEEEEeccCC
Q 011586 375 SYVRMVSKQ----MVGIFLTIWVRRSLRRHIQNVRVS------TVGVGVMGFIGNKGSVSVSMS--IHQTLFCFVCAHLT 442 (482)
Q Consensus 375 ~Y~lV~Skq----mvGI~L~VfvR~~l~~~Is~v~~s------~V~tGl~G~lGNKGaVaIr~~--i~~TsfcFVn~HLa 442 (482)
.|..+.... -.|.++.|+.|++-.+.+..-... ..+.|. +..-+++++.+.|. ..+..|+++|+||.
T Consensus 66 ~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~-~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~ 144 (298)
T 3mpr_A 66 GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGW-DAVLPRICSWGHFKCKDTGFEFLFFNLHMD 144 (298)
T ss_dssp TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTTCCEEEEEEEECC
T ss_pred CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCccc-ccccCceeEEEEEEEcCCCCEEEEEEecCC
Confidence 455554333 245567788777644333221110 001121 11235778888888 46789999999998
Q ss_pred CCCCCCChhHHHHHHHHHHHhC
Q 011586 443 SGEKDGDELKRNADVHEIHRRT 464 (482)
Q Consensus 443 Age~~~d~~rRN~D~~eIlr~l 464 (482)
+.. ...|..+...|++.+
T Consensus 145 ~~~----~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 145 HIG----KKARVESAFLVQEKM 162 (298)
T ss_dssp SSC----HHHHHHHHHHHHHHH
T ss_pred CCC----HHHHHHHHHHHHHHH
Confidence 532 357888888776653
No 40
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=58.05 E-value=4.8 Score=37.64 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=21.3
Q ss_pred EEEEeeecCCCCCCCC--C---CcccccC---CCCCCcEEEEeeeeee
Q 011586 102 ICVGTWNVGGKLPPDD--L---DIDDWID---MNEPADIYVLGLQEIV 141 (482)
Q Consensus 102 IfvgTWNV~G~~p~~~--l---dL~~WL~---~~~~~DIyVlGfQEIV 141 (482)
+-|.||||.+...... . .-.+++. ....||| |+|||+-
T Consensus 11 lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DI--v~LQEv~ 56 (301)
T 1zwx_A 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDV--VILNEAF 56 (301)
T ss_dssp CEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSE--EEEEEEC
T ss_pred eEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCE--EEEeccc
Confidence 5678999998521100 0 0012221 2357897 7899993
No 41
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=44.75 E-value=2.9 Score=40.55 Aligned_cols=37 Identities=11% Similarity=-0.132 Sum_probs=21.9
Q ss_pred EEEEEeeecCCCCCCCCCCccccc------C---CCCCCcEEEEeeeee
Q 011586 101 RICVGTWNVGGKLPPDDLDIDDWI------D---MNEPADIYVLGLQEI 140 (482)
Q Consensus 101 rIfvgTWNV~G~~p~~~ldL~~WL------~---~~~~~DIyVlGfQEI 140 (482)
.|-|.||||.+..+..+.+ ..|- . ....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5778899999952211100 1221 1 2356886 789999
No 42
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=39.71 E-value=1.1e+02 Score=27.19 Aligned_cols=36 Identities=6% Similarity=-0.021 Sum_probs=21.2
Q ss_pred EEEEEEcCEEEEEEeccCCCCCCCCC--hhHHHHHHHHHH
Q 011586 424 SVSMSIHQTLFCFVCAHLTSGEKDGD--ELKRNADVHEIH 461 (482)
Q Consensus 424 aIr~~i~~TsfcFVn~HLaAge~~~d--~~rRN~D~~eIl 461 (482)
.+...+. .|+++|+||.++..... ...|...+..|.
T Consensus 91 ~~~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~ 128 (256)
T 2jc4_A 91 VIAATVS--GVRVINVYCVNGEALDSPKFKYKEQWFAALT 128 (256)
T ss_dssp EEEEEET--TEEEEEEECCCCCSTTSHHHHHHHHHHHHHH
T ss_pred EEEEEeC--CEEEEEEEecCCCCCCcHhHHHHHHHHHHHH
Confidence 3444553 69999999988764221 123545555544
No 43
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=39.68 E-value=44 Score=30.21 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=34.6
Q ss_pred cCcceeEEEEEEcCEEEEEEeccCCCCCCCCChhHHHHHHHHHHHhC
Q 011586 418 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRT 464 (482)
Q Consensus 418 GNKGaVaIr~~i~~TsfcFVn~HLaAge~~~d~~rRN~D~~eIlr~l 464 (482)
-..|.+.+.+.+.+..|.|+|+||..+.. ...+.+.+..+++.+
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~ 144 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM 144 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh
Confidence 35788889998888899999999998753 245667888888764
No 44
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=23.66 E-value=78 Score=29.02 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCCEEEEEeeee----cceEEEEEEecccccccceeEEEEEeec-c-c-c-cccCcceeEEEEEEc---CEEEEEEeccC
Q 011586 373 RSSYVRMVSKQM----VGIFLTIWVRRSLRRHIQNVRVSTVGVG-V-M-G-FIGNKGSVSVSMSIH---QTLFCFVCAHL 441 (482)
Q Consensus 373 ~~~Y~lV~Skqm----vGI~L~VfvR~~l~~~Is~v~~s~V~tG-l-~-G-~lGNKGaVaIr~~i~---~TsfcFVn~HL 441 (482)
+..|..+.+... .++...++.|++....+.. .....| . . . .+ ......+.|... +..|.+||+||
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~---~~~~~~~~~~~~~~~-~R~p~~~~~~~~~~~g~~~~vi~~Hl 135 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDT---YQYDDGCESCGNDSF-SREPAVVKFSSHSTKVKEFAIVALHS 135 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEE---EECCTTSTTTHHHHC-SSCCEEEEEECTTSSSSEEEEEECCC
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCc---eeccCCCcCCCCCce-eeCCEEEEEEeCCCCCceEEEEEecC
Confidence 345666655544 2456667777653322221 111111 0 0 0 01 256677777765 57999999999
Q ss_pred CCCC
Q 011586 442 TSGE 445 (482)
Q Consensus 442 aAge 445 (482)
.+..
T Consensus 136 ~~~~ 139 (260)
T 2a40_B 136 APSD 139 (260)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 9764
No 45
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=20.00 E-value=3.2e+02 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.063 Sum_probs=20.0
Q ss_pred eeEEEEEEcCEEEEEEeccCCCCC
Q 011586 422 SVSVSMSIHQTLFCFVCAHLTSGE 445 (482)
Q Consensus 422 aVaIr~~i~~TsfcFVn~HLaAge 445 (482)
.+.+.+.+.+..|.++|+|+.++.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~ 120 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTG 120 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCC
Confidence 466777788999999999998764
Done!