BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011587
(482 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225451344|ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
[Vitis vinifera]
gi|298204853|emb|CBI34160.3| unnamed protein product [Vitis vinifera]
Length = 471
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 298/451 (66%), Positives = 351/451 (77%), Gaps = 7/451 (1%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
HIKQ+HA LITNA+ SPPL A+LI YC + S + F H PNLFLFNTLI+
Sbjct: 27 HIKQLHAHLITNAVSSPPLLAKLIHHYC----AFSSPHYAYTFFIHLRSPNLFLFNTLIK 82
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
C PP S+LVFA WVS+ L FDDFTY+FALG+CAR SL W GRQIH + K+G
Sbjct: 83 CLPPSSSILVFADWVSREALVFDDFTYIFALGACARSPSL---WEGRQIHARILKQGVWS 139
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NVLV TT IHFYA+N D++ + VFD+M RSS TWNAMI GYCSQ K A +ALVL
Sbjct: 140 NVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVL 199
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR MLVD GVKPTDTTMVCVLS +SQLG+LE G VHGY+EKT P NDVF+GT LVD
Sbjct: 200 FRAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVD 259
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKCGCL +AL IF M+E+NVLTWTAM TG+A HG+G EA+ LLD M GVKPNAVT
Sbjct: 260 MYSKCGCLGSALCIFWGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVT 319
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FTSLF+ACCHAGLVEEGL LF +M+SK+GV P I+HY CIVDLLGRAGHL+EAY+F+ G+
Sbjct: 320 FTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGM 379
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++PDAILWRSLLSAC VH DV +GE+VGK+LLQLQP+ +F D+ SEDF+ALSN+YAS
Sbjct: 380 PVEPDAILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYAS 439
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
AERW DVE+VR+ MKVK +ET+PG S +QT+
Sbjct: 440 AERWEDVETVREAMKVKGIETKPGCSSVQTS 470
>gi|356547105|ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 477
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/474 (60%), Positives = 349/474 (73%), Gaps = 10/474 (2%)
Query: 4 LPGHRCFALL-KLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS--TK 60
LP RC + L L ++ +IKQIHAQLITN LKSP +A+LI+ YC SP
Sbjct: 5 LPRFRCISFLYSLPKLSY--NIKQIHAQLITNGLKSPTFWAKLIEHYC---GSPDQHIAS 59
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
H VF +FD P+LFLFNTLIRC P D +L+F S+GL+ FD++TY F LG+CAR
Sbjct: 60 NAHLVFQYFDKPDLFLFNTLIRCVQPNDCILIFQNEFSRGLMYFDEYTYNFVLGACARSP 119
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S STLW+GRQ+H + K GF N+LV TT I+FYASNKDI S ++VFD+MP RS+ TWNA
Sbjct: 120 SASTLWVGRQLHARIVKHGFESNILVPTTKIYFYASNKDIISARRVFDEMPRRSTVTWNA 179
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY SQ + K A NAL LF DMLVDVS +KPT TT+V VLS SQ+G+LE GAC+H
Sbjct: 180 MITGYSSQKEGNKKYALNALSLFIDMLVDVSVIKPTGTTIVSVLSAVSQIGMLETGACIH 239
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G+ EKT PE+DVFIGT LVDMYSKCGCLD+AL +F RM +KN+LTWTAM T +AIHGK
Sbjct: 240 GFAEKTVCTPEDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNILTWTAMTTSLAIHGK 299
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A+ +L M GVKPN TFTS +ACCH GLVEEGL LF MK +G+ P IKHY
Sbjct: 300 GKQALEVLYKMGAYGVKPNEATFTSFLSACCHGGLVEEGLILFHEMKRTFGMMPQIKHYG 359
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLGRAG+LEEAY+FIM +PI PDA++WRSLL AC +HGDV +GEKVGK LLQL+ E
Sbjct: 360 CIVDLLGRAGNLEEAYDFIMRMPINPDAVIWRSLLGACKIHGDVVMGEKVGKFLLQLE-E 418
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+ + + SED++ALSN+YA AE+W DVE VRK MK K + ++ GSS +QT +
Sbjct: 419 WSSAE-SPKSEDYIALSNVYALAEKWDDVEIVRKTMKSKGILSKAGSSAVQTVS 471
>gi|356542056|ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 595
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/473 (58%), Positives = 344/473 (72%), Gaps = 8/473 (1%)
Query: 9 CFALLKLK-AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS--TKIVHFV 65
C L+KL+ +KQIHAQLITN LK P +A+LI+ YC SP V
Sbjct: 128 CDLLIKLQDKFNVSCQMKQIHAQLITNGLKYPTFWAKLIEHYC---GSPDQHIANNARLV 184
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
F +FD P+LFLFNTLIRC P DS+L+F S+GL+ FD++TY F LG+CAR S STL
Sbjct: 185 FQYFDKPDLFLFNTLIRCVQPNDSILIFRNEFSRGLMFFDEYTYNFVLGACARSPSASTL 244
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
W+GRQ+H + K G N++V TT ++FYASNKDI S +KVFD+MP RS+ TWNAMI GY
Sbjct: 245 WVGRQLHALIVKHGVESNIVVPTTKVYFYASNKDIISSRKVFDEMPRRSTVTWNAMITGY 304
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
S + K A NAL LF DML+DVSG+KPT TT+V VLS SQ+G+LE GAC+HG+ EK
Sbjct: 305 SSLKEGNKKYALNALYLFIDMLIDVSGIKPTATTIVSVLSAVSQIGMLETGACIHGFAEK 364
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
T PE+DVFIGT LVDMYSKCGCLD+AL +F RM +KN++TWTAM TG+AIHGKG +++
Sbjct: 365 TVCTPEDDVFIGTGLVDMYSKCGCLDSALSVFWRMNQKNIMTWTAMTTGLAIHGKGKQSL 424
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+L M GVKPN TFTS +ACCH GLVEEGL LF MK +GV P I+HY CIVDL
Sbjct: 425 EVLYKMGAYGVKPNEATFTSFLSACCHGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDL 484
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG LEEAY+FIM +PI PDA++WRSLL+ACN+HGDV +GEKVGK LLQL+ +
Sbjct: 485 LGRAGKLEEAYDFIMQMPINPDAVIWRSLLAACNIHGDVVMGEKVGKFLLQLEEWSS--A 542
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+ SED++ALSN+YA AE+W DVE+VR +MK K + + GSS +QT + L
Sbjct: 543 ESPKSEDYIALSNVYALAEKWDDVETVRIKMKAKSILNKAGSSAVQTVSMAVL 595
>gi|147796458|emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]
Length = 437
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/451 (60%), Positives = 323/451 (71%), Gaps = 41/451 (9%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
HIKQ+HA LITNA+ SPPL A+LI YC + S + F H PNLFLFNTLI+
Sbjct: 27 HIKQLHAHLITNAVSSPPLLAKLIHHYC----AFSSPHYAYTFFIHLRSPNLFLFNTLIK 82
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
C PP S+LVFA WVS+ L FDDFTY+FALG+CAR SL W GRQIH + K+G
Sbjct: 83 CLPPSSSILVFADWVSREALVFDDFTYIFALGACARSPSL---WEGRQIHARILKQGVWS 139
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NVLV TT IHFYA+N D++ + VFD+M RSS TWNAMI GYCSQ K A +ALVL
Sbjct: 140 NVLVQTTAIHFYANNNDVALARLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYARDALVL 199
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR MLVD GVKPTDTTMVCVLS +SQLG+LE G VHGY+EKT P NDVF+GT LVD
Sbjct: 200 FRAMLVDACGVKPTDTTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVD 259
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
IHG+G EA+ LLD M GVKPNAVT
Sbjct: 260 ----------------------------------IHGRGKEALELLDEMVAYGVKPNAVT 285
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FTSLF+ACCHAGLVEEGL LF +M+SK+GV P I+HY CIVDLLGRAGHL+EAY+F+ G+
Sbjct: 286 FTSLFSACCHAGLVEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGM 345
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++PDAILWRSLLSAC VH DV +GE+VGK+LLQLQP+ +F D+ SEDF+ALSN+YAS
Sbjct: 346 PVEPDAILWRSLLSACKVHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYAS 405
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
AERW DVE+VR+ MKVK +ET+PG S +QT+
Sbjct: 406 AERWEDVETVREAMKVKGIETKPGCSSVQTS 436
>gi|42564994|ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18970
gi|9280314|dbj|BAB01693.1| unnamed protein product [Arabidopsis thaliana]
gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis thaliana]
gi|332642654|gb|AEE76175.1| mitochondrial editing factor 20 [Arabidopsis thaliana]
Length = 472
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/470 (52%), Positives = 332/470 (70%), Gaps = 5/470 (1%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
PG R +LL+ + T KQIHAQL+ N L+ +LI YC+K ++ S+K+ H
Sbjct: 5 FPGPRFLSLLQQNS-KTLIQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAH 63
Query: 64 F-VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCS 121
VF F P+ FLFNTL++C+ P+DS+ +FA + SK LL ++ T+VF LG+CAR S
Sbjct: 64 LLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSAS 123
Query: 122 LSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L +GR +H V K GF++ + L+ TTL+HFYA N D+ +KVFD+MP R+S TWNA
Sbjct: 124 SSALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNA 183
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GYCS K A A+VLFR SGV+PTDTTMVCVLS SQ GLLE G+ VH
Sbjct: 184 MIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVH 243
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+EK + PE DVFIGTALVDMYSKCGCL+NA +F M+ KNV TWT+MATG+A++G+
Sbjct: 244 GYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGR 303
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GNE LL+ M + G+KPN +TFTSL +A H GLVEEG+ LF +MK+++GV P I+HY
Sbjct: 304 GNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYG 363
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLG+AG ++EAY FI+ +PIKPDAIL RSL +AC+++G+ +GE++GK LL+++ E
Sbjct: 364 CIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIERE 423
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +RK+MK +R++T PG S +
Sbjct: 424 DEKLS-GSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV 472
>gi|297834808|ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331126|gb|EFH61545.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 471
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 241/470 (51%), Positives = 327/470 (69%), Gaps = 6/470 (1%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
PG R +LL + T KQIHAQL+ N + L+ +LI YC+K S +S+K+ H
Sbjct: 5 FPGPRFLSLLYQNS-KTLIQAKQIHAQLVINGCQDNSLFGKLIGHYCSK-PSTESSKLAH 62
Query: 64 F-VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCS 121
VF F P+ FLFNTL++C+ P+DS+ +F W SK LL ++ T+VF LG+CAR S
Sbjct: 63 LLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFTNWASKSSLLYLNERTFVFVLGACARSAS 122
Query: 122 LSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L +GR +H V K GF++ + L+ TTL+H YA N D+ +KVFD+MP R+S TWNA
Sbjct: 123 SSALRVGRIVHGMVKKLGFLYESELIGTTLLHCYAKNGDLRYARKVFDEMPERTSVTWNA 182
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GYCS K A A++LFR SGV+PTDTTMVCVL SQ GL+E G+ VH
Sbjct: 183 MIGGYCSHKDKGNHNARKAMILFRRFSCCGSGVRPTDTTMVCVLPAISQTGLIEIGSLVH 242
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+EK + PE DVFIGT LVDMYSKCGCL++A +F M+ KNV TWT+MATG+A+HG+
Sbjct: 243 GYIEKLGFTPEIDVFIGTGLVDMYSKCGCLNSAFSVFELMKVKNVFTWTSMATGLALHGR 302
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GNE LLD M + G+KPN VTFTSL +A H GLV+EG+ LF +M++++GV P I+HY
Sbjct: 303 GNETPNLLDRMAESGIKPNEVTFTSLLSAYRHIGLVQEGIELFKSMRTRFGVTPVIQHYG 362
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLG+AG ++EAY F++ +PIKPD IL RSL +AC+++G+ A+GE++GK LL+++ E
Sbjct: 363 CIVDLLGKAGRIQEAYEFVLAMPIKPDTILLRSLCNACSIYGETAMGEEIGKALLEIERE 422
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +R +MK +R++T PG S +
Sbjct: 423 EEKLS-GSECEDYVALSNMLAHKGKWIEVEKLRNEMKERRIKTRPGFSFV 471
>gi|255580953|ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529128|gb|EEF31108.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 313
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/310 (68%), Positives = 251/310 (80%)
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
M RS TWNAMI G+ SQ +KAKD A AL+LFRDM+VDV KP D TMV VLS SSQ
Sbjct: 1 MSKRSVVTWNAMITGFSSQREKAKDSAVAALMLFRDMVVDVCAEKPNDITMVSVLSASSQ 60
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG+LE GAC+HGY+EKT +P+ND+FIGT LVDMYSKCGCLD+A+ F M+ KN LTWT
Sbjct: 61 LGVLECGACIHGYIEKTICVPQNDIFIGTGLVDMYSKCGCLDSAVKFFVEMKLKNKLTWT 120
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AMATG+AIHGKG E + LLD M G+KPNAVTFTSLF+ACCH+GLVEEGLHLF NMK K
Sbjct: 121 AMATGLAIHGKGKETLELLDGMGASGIKPNAVTFTSLFSACCHSGLVEEGLHLFHNMKGK 180
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+EP I+HY CIVDLLG+ GHL+EAY FI G+P++PDAILWR LLSAC VHGDV +GEK
Sbjct: 181 FGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGMPMEPDAILWRCLLSACKVHGDVVMGEK 240
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
V KILL LQPE V+ +SED+VALSN+YASAERW DVE +RK+MKVKR+ET+PG+S+
Sbjct: 241 VAKILLHLQPEKNSVESDDSSEDYVALSNVYASAERWEDVEILRKEMKVKRLETKPGASL 300
Query: 470 LQTTTHYTLD 479
+Q + L+
Sbjct: 301 VQAIGNRLLE 310
>gi|449435742|ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cucumis sativus]
gi|449522917|ref|XP_004168472.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cucumis sativus]
Length = 318
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/313 (61%), Positives = 245/313 (78%), Gaps = 4/313 (1%)
Query: 170 MPMRSSATWNAMINGYCSQSKK-AKDCAFNALVLFRDMLVDVSG--VKPTDTTMVCVLSV 226
M +R+S TWNAMI GYCSQ K ++ A +AL LFR MLV+ + VKPTDTTMVC+LS
Sbjct: 1 MSLRNSVTWNAMIAGYCSQGGKVSQKYARDALELFRGMLVESTNFEVKPTDTTMVCILSA 60
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+SQLG+LE G+CVH Y++KT PE DVFIGT LV+MYSKCG L++A +F +M++KNVL
Sbjct: 61 ASQLGMLETGSCVHAYIKKTVDSPEKDVFIGTGLVNMYSKCGLLNSASSVFKQMKQKNVL 120
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TWT+MATG+A+HG+G EA+ LLD+M GVKPNAVTFTSL +ACCH GL+EEGLHLF M
Sbjct: 121 TWTSMATGLAVHGRGKEALELLDAMGAHGVKPNAVTFTSLLSACCHGGLIEEGLHLFRVM 180
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ K+GV P ++HY CIVDLLGR+GHL EAY I+ +P++PD +LWRSLLS+C +HGDV +
Sbjct: 181 ERKFGVVPQMQHYGCIVDLLGRSGHLREAYKLILEMPMEPDGVLWRSLLSSCMLHGDVEM 240
Query: 407 GEKVGKILLQLQPEVTFVDVACT-SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
GE+VGK+L++ Q +F D C SEDFVALSN+YAS ERW DVE++R +MK+K +E +
Sbjct: 241 GERVGKLLVERQGGESFDDEWCVGSEDFVALSNVYASVERWDDVEALRDEMKIKGIENKA 300
Query: 466 GSSILQTTTHYTL 478
G S LQTT L
Sbjct: 301 GCSSLQTTGSQGL 313
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/498 (35%), Positives = 276/498 (55%), Gaps = 61/498 (12%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFTH 68
L L+ + +H+K IHA +I + A + +C +S T ++ + +F+
Sbjct: 21 LFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSS--GTSLIDYASRIFSQ 78
Query: 69 FDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
PNLF+FN +IR P + + +GLL D+ T+ F + SC + +S
Sbjct: 79 IQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLP-DNLTFPFLVKSCTKLHCIS- 136
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------------------- 156
+G Q H H+ K GF +V V +L+H YA+
Sbjct: 137 --MGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194
Query: 157 -NK--DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
NK D+ S +K+FDQMP ++ TW+ MI+GY + K A+ LF+ ++ GV
Sbjct: 195 FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK-----AVELFK--VLQSQGV 247
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+ +T MV V+S + LG LE G H Y+ K ++ +GTALVDMY++CG +D A
Sbjct: 248 RANETVMVSVISSCAHLGALELGERAHDYVVKNGMTL--NLILGTALVDMYARCGSIDKA 305
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F + E++ L+WTA+ G+A+HG +++ +M + G+ P +TFT++ +AC H
Sbjct: 306 VWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHG 365
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLVE G +F++MK VEP ++HY C+VDLLGRAG LEEA F++ +P+KP+A +W +
Sbjct: 366 GLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGA 425
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL AC +H + +GE+VGKIL+QL P+ S +V LSNIYA+A+ W V +R
Sbjct: 426 LLGACRIHKNAEIGERVGKILIQLLPQ--------HSGYYVLLSNIYANAKEWEKVTEMR 477
Query: 454 KQMKVKRVETEPGSSILQ 471
+ MK K ++ PG S+++
Sbjct: 478 QMMKAKGLKKPPGHSLIE 495
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 181/464 (39%), Positives = 253/464 (54%), Gaps = 25/464 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T+ +KQ+ A I L S +C+ + S + H +F P++
Sbjct: 27 LPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDI 86
Query: 75 FLFNTLIRCTPPQDSVL----VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
LFNT+ R D+ L +F + GL DD+T+ L +CA S L GRQ
Sbjct: 87 VLFNTMARGYARTDTPLRAFTLFTQILFSGLFP-DDYTFPSLLKACA---SCKALEEGRQ 142
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H K G NV V TLI+ Y + ++ ++VFD++ T+NAMI GY S+
Sbjct: 143 LHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSR 202
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ AL LFR++ +KPTD TM+ VLS + LG L+ G +H Y++K +
Sbjct: 203 PNE-----ALSLFREL--QARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGF-- 253
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
V + TAL+DMY+KCG LD+A+ +F M ++ W+AM AIHG G +A+ L
Sbjct: 254 NRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKE 313
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
MR G +P+ +TF L AC H GLVEEG F M+ K+GV P IKHY C+VDLLGRAG
Sbjct: 314 MRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAG 373
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
LEEAY FI+G+PI+P ILWR+LLSAC HG+V LG++V + + +L
Sbjct: 374 RLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDS--------HG 425
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
D++ LSN+ A A RW DV VRK M + V PG S ++
Sbjct: 426 GDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNN 469
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 262/488 (53%), Gaps = 55/488 (11%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T+ S + Q HA ++ + L A + + + Q+ H +F+ PN +++N
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 79 TLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
T+IR +P ++ L + + + D +T+ FAL SC F + GRQIH HV
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEE---GRQIHGHV 134
Query: 136 TKRGFMFNVLVATTLIHFYAS---------------NKDISS-----------------G 163
K G ++ + TLIH YAS +D+ S
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAS 194
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
++VF + P+++ +WNAMI GY + ++ LVLF DM +GVKP + T+V V
Sbjct: 195 RRVFGETPVKNVVSWNAMITGYSHAGRFSE-----VLVLFEDM--QHAGVKPDNCTLVSV 247
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS + +G L G VH Y++K D F+ TALVDMYSKCG ++ AL +F+ K
Sbjct: 248 LSACAHVGALSQGEWVHAYIDKNGI--SIDGFVATALVDMYSKCGSIEKALEVFNSCLRK 305
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++ TW ++ +G++ HG G A+++ M G KPN VTF + +AC AGL++EG +F
Sbjct: 306 DISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMF 365
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ M G++P I+HY C+VDLLGR G LEEA + +P K +++W SLL AC HG+
Sbjct: 366 NLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGN 425
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V L E+V + LL+L P+ S FV LSN+YAS RW DV VR++M+ + V
Sbjct: 426 VELAERVAQKLLELSPQ--------ESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRK 477
Query: 464 EPGSSILQ 471
+PG S+++
Sbjct: 478 DPGCSMIE 485
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 175/482 (36%), Positives = 257/482 (53%), Gaps = 48/482 (9%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T H+KQ+HAQ+IT+ + P + P +F H P L+N+
Sbjct: 79 TLRHLKQVHAQIITH--HNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNS 136
Query: 80 LIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
LIR P +++ ++ + GL D TY F + +C S W G +H HV
Sbjct: 137 LIRALSSSKTPLEALPLYHTMLQSGLKP-DHMTYPFVIKACNES---SVTWFGLLVHTHV 192
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA--- 192
K GF + + ++LIH YA+ KD+ + K++F+ R +WNAMI+GY +
Sbjct: 193 VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHAR 252
Query: 193 --------KDC-AFN--------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+D ++N AL LF M GVKPT+ T+V +LS +
Sbjct: 253 MVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM--RAVGVKPTEATVVSLLSACAH 310
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG L+ G +H Y+ E + +GTALVDMY+KCG + A +F+ M K+VL W
Sbjct: 311 LGALDKGLHLHTYINDNRI--EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWN 368
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+ GMAIHG EA +L M++ GV+PN +TF ++ +AC HAG+V+EG L D M S
Sbjct: 369 TIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS 428
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+EP ++HY C++DLL RAG LEEA I +P++P+ +LL C +HG+ LGE
Sbjct: 429 YGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEM 488
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
VGK L+ LQP C S ++ LSNIYA+A++W D VR MKV + PG S+
Sbjct: 489 VGKRLINLQP--------CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSV 540
Query: 470 LQ 471
++
Sbjct: 541 IE 542
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 268/477 (56%), Gaps = 30/477 (6%)
Query: 5 PGHRCFALLKLKAI----TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQST 59
P +C L+ + + T+ S KQ HA L+ T+ L +P ++LI +
Sbjct: 4 PSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSG--DL 61
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+FT P+ F+ NT+IR P ++V ++ + V +G+ D++TY F L +
Sbjct: 62 NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGV-PVDNYTYPFVLAA 120
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
CAR L + LGR+ H V K GF ++ V LI FY + VFD+ +R
Sbjct: 121 CAR---LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
TWN MIN + ++ K AF+ L D + + ++P + TMV ++ +QLG LE
Sbjct: 178 VTWNIMINAHLNKGLSEK--AFDLL----DEMTKLDNLRPDEVTMVSLVPACAQLGNLER 231
Query: 236 GACVHGYMEKTFYMPEN-DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +H Y ++ N D+ + TALVDMY+KCG +D AL +F RMR +NV TW A+ G
Sbjct: 232 GKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGG 291
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+A+HG G +AI L D M + P+ VTF +L AC HAGLV+EGL +F MK+K+ +EP
Sbjct: 292 LAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEP 351
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
++HY C+VDLL RA +++A FI +PIK +++LW +LL AC G L EK+G+ +
Sbjct: 352 RMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRV 411
Query: 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++L+P+ +C +V LSN+YA +W +RKQMK K +E PG S ++
Sbjct: 412 IELEPD------SCGR--YVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 460
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 279/501 (55%), Gaps = 55/501 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPP 72
L+ + ++QIH Q++ L + A + +C ASP S + + VF P
Sbjct: 25 LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC---ASPNSGSLAYARTVFDRIFRP 81
Query: 73 NLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
N F++NT+IR P++++L++ + + + + +T+ F L +C+ S+S L
Sbjct: 82 NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSV-PHNAYTFPFLLKACS---SMSALEET 137
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--C 186
+QIH H+ K GF + +L++ Y+ + DI S + +FDQ+ R + +WN+MI+GY C
Sbjct: 138 QQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKC 197
Query: 187 SQSKKAKDCAFN-------------------------ALVLFRDMLVDVSGVKPTDTTMV 221
+ + A + FN AL LF M +G+K + +V
Sbjct: 198 GEIEMAYEI-FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM--QTAGIKLDNVALV 254
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
L + LG+L+ G +H Y++K + E D +G L+DMY+KCG L+ A+ +F +M
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKK--HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME 312
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
EK V WTAM +G AIHG+G EA+ M+ GV+PN +TFT + AC HAGLV E
Sbjct: 313 EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKL 372
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF++M+ G +P I+HY C+VDLLGRAG L+EA I +P+KP+A +W +LL+AC++H
Sbjct: 373 LFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIH 432
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G++ LG+++GKIL+Q+ P ++ L++I+A+A W VR+QMK + V
Sbjct: 433 GNLELGKQIGKILIQVDP--------GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 484
Query: 462 ETEPGSSILQT--TTHYTLDG 480
PG S++ T H L G
Sbjct: 485 SKLPGCSVISVNGTAHEFLAG 505
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 271/498 (54%), Gaps = 63/498 (12%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFTH 68
L+ L+ + +K IHA ++ L A + +C +T ++H+ V +
Sbjct: 21 LVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCID----STTNLLHYAIRVASQ 76
Query: 69 FDPPNLFLFNTLIR-CTPPQDSVLVFAYWVSK---GLLTFDDFTYVFALGSCARFCSLST 124
PNLF++N LIR C+ ++ F Y++ GLL D+ T+ F + +CA+ L
Sbjct: 77 IQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLP-DNITHPFLVKACAQ---LEN 132
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS----------------------- 161
+G Q H K GF + V +L+H YAS DI+
Sbjct: 133 APMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAG 192
Query: 162 --------SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
S +++FD+MP R+ TW+ MI+GY +C A+ F + GV
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARN-----NCFEKAVETFEAL--QAEGV 245
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+T MV V+S + LG L G H Y+ + ++ +GTA+VDMY++CG ++ A
Sbjct: 246 VANETVMVGVISSCAHLGALAMGEKAHEYVMRNKL--SLNLILGTAVVDMYARCGNVEKA 303
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+++F ++ EK+VL WTA+ G+A+HG +A+ M G P +TFT++ AC HA
Sbjct: 304 VMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHA 363
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
G+VE GL +F++MK GVEP ++HY C+VDLLGRAG L +A F++ +P+KP+A +WR+
Sbjct: 364 GMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRA 423
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL AC +H +V +GE+VGKILL++QPE S +V LSNIYA A +W DV +R
Sbjct: 424 LLGACRIHKNVEVGERVGKILLEMQPEY--------SGHYVLLSNIYARANKWKDVTVMR 475
Query: 454 KQMKVKRVETEPGSSILQ 471
+ MK K V PG S+++
Sbjct: 476 QMMKDKGVRKPPGYSLIE 493
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 278/501 (55%), Gaps = 55/501 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPP 72
L+ + ++QIH Q++ L + A + +C ASP S + + VF P
Sbjct: 25 LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC---ASPNSGSLAYARTVFDRIFRP 81
Query: 73 NLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
N F++NT+IR P++++L++ + + + + +T+ F L +C+ S+S
Sbjct: 82 NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSV-PHNAYTFPFLLKACS---SMSASEET 137
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--C 186
+QIH H+ K GF + +L++ Y+ + DI S + +FDQ+ R + +WN+MI+GY C
Sbjct: 138 QQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKC 197
Query: 187 SQSKKAKDCAFN-------------------------ALVLFRDMLVDVSGVKPTDTTMV 221
+ + A + FN AL LF M +G+K + +V
Sbjct: 198 GEIEMAYEI-FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM--QTAGIKLDNVALV 254
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
L + LG+L+ G +H Y++K + E D +G L+DMY+KCG L+ A+ +F +M
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKK--HEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME 312
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
EK V WTAM +G AIHG+G EA+ M+ GV+PN +TFT + AC HAGLV E
Sbjct: 313 EKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKL 372
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF++M+ G +P I+HY C+VDLLGRAG L+EA I +P+KP+A +W +LL+AC++H
Sbjct: 373 LFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIH 432
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G++ LG+++GKIL+Q+ P ++ L++I+A+A W VR+QMK + V
Sbjct: 433 GNLELGKQIGKILIQVDP--------GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGV 484
Query: 462 ETEPGSSILQT--TTHYTLDG 480
PG S++ T H L G
Sbjct: 485 SKLPGCSVISVNGTAHEFLAG 505
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/454 (36%), Positives = 256/454 (56%), Gaps = 25/454 (5%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+HI ++HA+L+ + PL + + L C A P S +F P+ F FNT+I
Sbjct: 2 NHIYKLHARLLKTGHHNHPLALRRLLLSCAASA-PASLSYARSIFDLIAFPDTFAFNTII 60
Query: 82 RCTPPQDSVLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
R + + + ++ D FT+ F L +CAR L G +H + K G
Sbjct: 61 RAHADSSPSFSLSLFSKMAMAGVSPDHFTFPFVLKACAR------LQTGLDLHSLLFKLG 114
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F +V V LIHFY + KVF++MP R +W++MI + + A
Sbjct: 115 FDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNG-----FGYEA 169
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L LF+ M + V VKP + ++ V+S S LG LE G + G++ + E V +GTA
Sbjct: 170 LALFQRMQL-VGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGL--EFTVSLGTA 226
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDM+S+CGC++ ++ +F M E+NVLTWTA+ G+A+HG+ EA+R+ MR+ G +P+
Sbjct: 227 LVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPD 286
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTFT + AC H GLV EG H+F+++++++G+EP +HY C+VDLLGRAG L EA F+
Sbjct: 287 HVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFV 346
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
G+PI+P++I+WR+LL AC H + L EKV + + +L + D+V LSN+
Sbjct: 347 DGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELD--------SYHDGDYVLLSNV 398
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
Y RW + VR M+ KR+ +PG S++
Sbjct: 399 YGGVGRWAEKAGVRNSMREKRISKKPGCSLINVN 432
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/484 (34%), Positives = 272/484 (56%), Gaps = 50/484 (10%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+ +K+IHA ++ +L +S L +++ L +T +F + PN+F +N +
Sbjct: 21 AELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYAT----MIFQQLENPNVFSYNAI 76
Query: 81 IRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
IR ++ VF ++ + D FT+ F + SCA L LG+Q+H HV
Sbjct: 77 IRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCA---GLLCRRLGQQVHAHVC 133
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQSKKAKD 194
K G + + LI Y D+S +V+++M R + +WN++I+G+ Q K A++
Sbjct: 134 KFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSARE 193
Query: 195 ------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
C +AL +FR+M V G++P + +++ VL +QL
Sbjct: 194 VFDEMPCRTIVSWTTMINGYARGGCYADALGIFREM--QVVGIEPDEISVISVLPACAQL 251
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G LE G +H Y EK+ ++ VF ALV+MY+KCGC+D A +F++M EK+V++W+
Sbjct: 252 GALEVGKWIHKYSEKSGFLKNAGVF--NALVEMYAKCGCIDEAWGLFNQMIEKDVISWST 309
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
M G+A HGKG AIR+ + M+ GV PN VTF + +AC HAGL EGL FD M+ +
Sbjct: 310 MIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDY 369
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
+EP I+HY C+VDLLGR+G +E+A + I+ +P++PD+ W SLLS+C +H ++ +
Sbjct: 370 HLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVA 429
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ LL+L+PE S ++V L+NIYA ++W V +VRK ++ KR++ PG S++
Sbjct: 430 MEQLLKLEPE--------ESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLI 481
Query: 471 QTTT 474
+
Sbjct: 482 EVNN 485
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 261/464 (56%), Gaps = 32/464 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
K + H++Q+HA +I L+ I ++C + S VF + P+
Sbjct: 58 FKQCESMKHLEQLHAHVIQTGLEQNLFVMGKIIVFCAV-SECGSMDYALRVFGKIENPDG 116
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+NT+IR P+ + + KG + D+FTY F + C + L + LG+Q
Sbjct: 117 FLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEV-LDNFTYSFLVKVCGQ---LGSDLLGKQ 172
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI--NGYCSQ 188
IH +V K G +V V TL+H Y KDI + +F++MP WN +I N YC +
Sbjct: 173 IHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNTIIDCNVYCGR 232
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
K+A + F L SG+KP D T V LS + LG L+ G VH ++ T
Sbjct: 233 YKEAIELFFRMLQ---------SGLKPDDATFVVTLSACAALGELDIGRRVHSCIDHTGL 283
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
N V + +L+DMY+KCG ++ A IF++M+ +N+++W M G+A+HG G+EA+ L
Sbjct: 284 --GNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMHGHGDEALELF 341
Query: 309 DSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M + + PN VTF + AC H G+VEEG FD M+ + ++P IKHY +VD+LG
Sbjct: 342 SKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIKHYGSMVDILG 401
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG +EEAY I +PI+ ++I+WR+LL+AC VHG++ L E+V + LL+L+P+
Sbjct: 402 RAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQXLLELEPD------- 454
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET-EPGSSIL 470
S D+V L+N+YASA +W V VRK M ++ V+ +PG+S +
Sbjct: 455 -HSSDYVLLANMYASAGQWNKVXRVRKSMHIRGVQKPKPGNSYI 497
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 172/469 (36%), Positives = 262/469 (55%), Gaps = 29/469 (6%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIVHFV 65
+C ALL L ++ +QIHA I + L +P + LI SP S H +
Sbjct: 41 KCIALL-LSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLI-FTLLSFCSPMS--YAHQI 96
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
F+ PN+F +NT+IR ++ L + + D TY F L + A+ +
Sbjct: 97 FSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDV 156
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
G ++H + GF V V TL+H YA+ S K+F+ M R+ TWN++I
Sbjct: 157 RE---GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVI 213
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
NGY + + AL LFR+M + GV+P TMV +LS ++LG L G H Y
Sbjct: 214 NGYALNGRPNE-----ALTLFREM--GLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
M K + ++ G AL+D+Y+KCG + A +F M EK+V++WT++ G+A++G G
Sbjct: 267 MVKVGL--DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGK 324
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EA+ L + G+ P+ +TF + AC H G+V+EG F MK ++G+ P I+HY C+
Sbjct: 325 EALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCM 384
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGRAG +++A+ FI +P++P+A++WR+LL AC +HG +ALGE LLQL+P+
Sbjct: 385 VDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPK-- 442
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YAS +RW DV VR+ M + V+ PG S+++
Sbjct: 443 ------HSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVE 485
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 166/454 (36%), Positives = 255/454 (56%), Gaps = 25/454 (5%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+HI ++HA+L+ + PL + + L C A P S +F P+ F FNT+I
Sbjct: 2 NHIYKLHARLLKTGHHNHPLALRRLLLSCAASA-PASLSYARSIFDLIAFPDTFAFNTII 60
Query: 82 RCTPPQDSVLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
R + + + ++ D FT+ F L +CAR L G +H + K G
Sbjct: 61 RAHADSSPSFSLSLFSKMTMAGVSPDHFTFPFVLKACAR------LQTGLDLHSLLFKLG 114
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F +V V LIHFY + K F++MP R +W++MI + + A
Sbjct: 115 FDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNG-----FGYEA 169
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L LF+ M + V VKP + ++ V+S S LG LE G + G++ + E V +GTA
Sbjct: 170 LALFQRMQL-VGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGL--EFTVSLGTA 226
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDM+S+CGC++ ++ +F M E+NVLTWTA+ G+A+HG+ EA+R+ MR+ G +P+
Sbjct: 227 LVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPD 286
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTFT + AC H GLV EG H+F+++++++G+EP +HY C+VDLLGRAG L EA F+
Sbjct: 287 HVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFV 346
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
G+PI+P++I+WR+LL AC H + L EKV + + +L + D+V LSN+
Sbjct: 347 DGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELD--------SYHDGDYVLLSNV 398
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
Y RW + VR M+ KR+ +PG S++
Sbjct: 399 YGGVGRWAEKAGVRNSMREKRISKKPGCSLINVN 432
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 169/438 (38%), Positives = 250/438 (57%), Gaps = 39/438 (8%)
Query: 43 AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVS---- 98
+ LI +Y AS VF + + ++N ++ + L W+
Sbjct: 159 SSLIHMY----ASCGDVAAARLVFDAAEESGVVMWNAIVA------AYLKNGDWMEVVEM 208
Query: 99 -KGLL----TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF 153
KG+L FD+ T V + +C R + LG+ + HV + G N + T L+
Sbjct: 209 FKGMLEVGVAFDEVTLVSVVTACGR---IGDAKLGKWVAGHVDEEGLARNPKLVTALMDM 265
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
YA +I +++FD M R W+AMI+GY +Q+ + ++ AL LF +M ++ V
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAMISGY-TQADQCRE----ALGLFSEM--QLARV 318
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+P D TMV VLS + LG LE G VH Y+ + +GTALVD Y+KCGC+D+A
Sbjct: 319 EPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRL--SLTTILGTALVDFYAKCGCIDDA 376
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ F M KN TWTA+ GMA +G+G EA+ L SMR+ G++P VTF + AC H+
Sbjct: 377 VEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHS 436
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
LVEEG FD+M +G++P ++HY C+VDLLGRAG ++EAY FI +PI+P+A++WR+
Sbjct: 437 CLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRA 496
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LLS+C VH +V +GE+ K ++ L P S D+V LSNIYASA +W D VR
Sbjct: 497 LLSSCAVHRNVGIGEEALKQIISLNPS--------HSGDYVLLSNIYASAGQWKDAAMVR 548
Query: 454 KQMKVKRVETEPGSSILQ 471
K+MK + +E PG S+++
Sbjct: 549 KEMKDRGIEKTPGCSLIE 566
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 209/443 (47%), Gaps = 33/443 (7%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
L PG A + PS++ Q+HA LI KS L + +A+ S +
Sbjct: 10 LPTPGRAGPAPPRAPLRADPSYLPQLHAALI----KSGELTGSAKSFHSLLEAAAASPTL 65
Query: 62 VHFVFTHFD----PP-NLFLFNTLIRC----TPPQDSVLVFAYWV-SKGLLTFDDFTYVF 111
+ + + F PP + +N L+R P+D++ +F + + D T
Sbjct: 66 LPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAAC 125
Query: 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
AL SC+R C+L +GR + + KRG + + V ++LIH YAS D+++ + VFD
Sbjct: 126 ALKSCSRMCALD---VGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAE 182
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
WNA++ Y + +F+ ML GV + T+V V++ ++G
Sbjct: 183 ESGVVMWNAIVAAYLKNGDW-----MEVVEMFKGML--EVGVAFDEVTLVSVVTACGRIG 235
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+ G V G++++ + N + TAL+DMY+KCG + A +F M+ ++V+ W+AM
Sbjct: 236 DAKLGKWVAGHVDEEG-LARNPKLV-TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAM 293
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+G + EA+ L M+ V+PN VT S+ +AC G +E G + ++ K
Sbjct: 294 ISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRL 353
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEK 409
I + +VD + G +++A +P+K ++ W +L+ A N G AL
Sbjct: 354 SLTTILG-TALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALIKGMATNGRGREALELF 411
Query: 410 VGKILLQLQP-EVTFVDV--ACT 429
++P +VTF+ V AC+
Sbjct: 412 SSMREAGIEPTDVTFIGVLMACS 434
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 182/539 (33%), Positives = 280/539 (51%), Gaps = 94/539 (17%)
Query: 2 LSLPGHRCFALLK----LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCT---KKA 54
+++ H C +LL L+A+T QIH I + + + + L+C A
Sbjct: 1 MTIAIHHCLSLLNSCKNLRALT------QIHGLFIKYGVDTDSYFTGKLILHCAISISDA 54
Query: 55 SPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYV 110
P + +++ F P+ F+FNTL+R P +SV VF + KG + D F++
Sbjct: 55 LPYARRLL----LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFA 110
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-------------- 156
F + + F SL T G Q+H K G ++ V TTLI Y
Sbjct: 111 FVIKAVENFRSLRT---GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 167
Query: 157 -----------------NKDISSGKKVFDQMPMRSSATWNAMINGYCS----QSKK---- 191
D++ +++FD+M +R+ +WN M+ GY +S K
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 192 -----------------AKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
A + +FN + + FR++ +G+ P + ++ VLS SQ G
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL--QRAGMSPNEVSLTGVLSACSQSGSF 285
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-VLTWTAMA 292
EFG +HG++EK Y V + AL+DMYS+CG + A L+F M+EK +++WT+M
Sbjct: 286 EFGKILHGFVEKAGY--SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 343
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G+A+HG+G EA+RL + M GV P+ ++F SL AC HAGL+EEG F MK + +
Sbjct: 344 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 403
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
EP I+HY C+VDL GR+G L++AY+FI +PI P AI+WR+LL AC+ HG++ L E+V +
Sbjct: 404 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P S D V LSN YA+A +W DV S+RK M V+R++ S+++
Sbjct: 464 RLNELDPN--------NSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 300 bits (769), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 264/474 (55%), Gaps = 29/474 (6%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
+C LL+ +++ + ++QIHA I N ++ L LI Y SP H
Sbjct: 16 EKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLI-FYLVSLPSPPPMSYAHK 74
Query: 65 VFTHFDPP-NLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARF 119
VF+ + P N+F++NTLIR +V ++ + G + D TY F L + +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGK- 133
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP + WN
Sbjct: 134 --MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ING+ K + AL L+ +M D+ G+KP T+V +LS +++G L G
Sbjct: 192 SVINGFAENGKPEE-----ALALYTEM--DLKGIKPDGFTIVSLLSACAKIGALTLGKRF 244
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H YM K ++ L+D+Y++CG ++ A +F M +KN ++WT++ G+A++G
Sbjct: 245 HVYMIKVGLT--RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 300 KGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EAI L +M G+ P +TF + AC H G+V+EG F M ++ +EP I+H
Sbjct: 303 LGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEH 362
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ C+VDLL RAG +++AY +I+ +P++P+ ++WR+LL AC VHGD L E +LQL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLE 422
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
P S D+V LSN+YAS +RW DV+ +RKQM V PG S+++
Sbjct: 423 PN--------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEV 468
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 259/474 (54%), Gaps = 66/474 (13%)
Query: 50 CTKKASPQSTKIVHF------------VFTHFDPPNLFLFNTLIRCTPP----QDSVLVF 93
C ++S +T+IVH VF H PNL L N +I+ +D+V V+
Sbjct: 37 CLSQSSYVATQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVY 96
Query: 94 AYWV--------SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
+ S G D FTY F L +C L+ LGRQ+H HV + G + +
Sbjct: 97 VRMLRCLPDPSSSGGFSVGDRFTYPFLLKACG---GLAASQLGRQVHAHVARSGCESHAI 153
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQSKKAKD--------- 194
V +LI Y D+S +KVFD M + + +WN +I+ + Q +KA++
Sbjct: 154 VQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKT 213
Query: 195 -CAFNALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ ALV +FR M ++ G +P D ++V VL +QLG LE G +
Sbjct: 214 VVSWTALVSGYTAVGDFAGAVEVFRQMQME--GFEPDDVSIVAVLPACAQLGALELGRWI 271
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
+ Y K + ++I AL++MY+KCGC++ AL +F M EK+V++W+ G+A HG
Sbjct: 272 YAYCNKHGML--GKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHG 329
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+ EA++L + M R+ V PN +TF L +AC HAGL++EGL FD MK ++GVEP ++H
Sbjct: 330 RAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEH 389
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C+VDLLGR+G ++ A + I G+PI PD +W SLLSAC H DV + L++L+
Sbjct: 390 YGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELE 449
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
PE DV + V L+N+YA+A RW +V S RK+++ + PG S+++
Sbjct: 450 PE----DVG----NLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEV 495
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/527 (33%), Positives = 273/527 (51%), Gaps = 81/527 (15%)
Query: 9 CFALL-KLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
C AL K K++ T +KQI A + L S PL + + L+C P S +F
Sbjct: 8 CLALFSKCKSLRT---VKQIQALIFKTCLNSYPLVSGKLLLHCAVTL-PDSLHYARRLFL 63
Query: 68 HFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
P++F++NTLIR P +++ +F K + D F++ F L + A +L+
Sbjct: 64 DIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALT 123
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM------------- 170
G Q+H G ++ V TTLI YA + +KVFD+M
Sbjct: 124 N---GLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVA 180
Query: 171 ------------------PMRSSATWNAMINGYCSQSKK--------------------- 191
P+R+ +WN M+ GY +
Sbjct: 181 ACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTM 240
Query: 192 ----AKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
A + FN A FR+ V G++P + ++ VLS +Q G EFG +HG++EK+
Sbjct: 241 IVGFAHNGNFNDAFAFFRE--VRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKS 298
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
++ + + AL+D YSKCG LD A L+F M ++ ++WTAM GMA+HG G EAIR
Sbjct: 299 GFL--QIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIR 356
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L + M + +KP+++TF S+ AC HAGLV+ G F M + +G+EP I+HY C+VDL
Sbjct: 357 LFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLY 416
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG L++AY+F+ +PI P+ I+WR+LL AC++HG++ L +V + L +L PE
Sbjct: 417 GRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPE------ 470
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S D V LSNIYA A +W DV ++R+ M +R++ PG S+++
Sbjct: 471 --NSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVN 515
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 183/490 (37%), Positives = 262/490 (53%), Gaps = 48/490 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQ-STKIVHFVFTHFD 70
L L + T + QIHAQ IT + S A I + SP S F+F
Sbjct: 39 LRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAA--LSPHGSIPYARFLFYRIR 96
Query: 71 PPNLFLFNTLIRC---TP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P++F+ NTLIR +P P D+V+ ++ ++ D T+ L +C+ SL
Sbjct: 97 KPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLR--- 153
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY- 185
LG IH HV K G+ V V+ L+ YAS I S VFD+ P A+WN MI GY
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213
Query: 186 -CSQSKKAK-----------------------DCAF-NALVLFRDMLVDVSGVKPTDTTM 220
C K A+ + F L LF+DM+ + ++P ++ +
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE--KIEPNESVL 271
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V LS + LG +E G + YME+ V +GTAL+DMYSKCG ++ AL +F +M
Sbjct: 272 VNALSACAHLGAMEQGQWIERYMERKNV--RLTVRLGTALIDMYSKCGSVERALEVFHKM 329
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+EKNVL W+AM G+AI+G+G +A+ L M GVKPN VTF + AC H+ LV+EG
Sbjct: 330 KEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGC 389
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
F +M S +G++P+ H+ C+VDL GRAG L++A I +P KP++ +W +LL+AC +
Sbjct: 390 SFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRI 449
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HGD LGE+VGK LL+L P +V LSNIYA+ RW V +R+ M+ ++
Sbjct: 450 HGDTELGEQVGKRLLELDPN--------HGGRYVLLSNIYAACGRWDRVAELRRMMRERQ 501
Query: 461 VETEPGSSIL 470
V PG S +
Sbjct: 502 VSKTPGCSFI 511
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/501 (34%), Positives = 267/501 (53%), Gaps = 78/501 (15%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
+ QIH I + + + + + L+C S + + F P+ F+FNTL+R
Sbjct: 188 LTQIHGFFIKSGVDTDSYFIGKLILHCAISIS-DALPYARRLLLCFPEPDAFMFNTLVRG 246
Query: 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P +SV VF + KG + D F++ F + + A F SL T G Q+H K G
Sbjct: 247 YSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRT---GFQMHCQALKHG 303
Query: 140 FMFNVLVATTLIHFYAS-------------------------------NKDISSGKKVFD 168
++ VATTLI Y D+S +++FD
Sbjct: 304 LDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFD 363
Query: 169 QMPMRSSATWNAMINGYC------------SQSKKAKDCAFNALVL-------------- 202
+M +R+ +WN M+ GY S+ D +++ +++
Sbjct: 364 KMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSY 423
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR++L + ++P + ++ VLS SQ G EFG +HG++EK+ Y V + AL+D
Sbjct: 424 FRELLR--AEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGY--SWIVSVNNALID 479
Query: 263 MYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
MYS+CG + A L+F M+EK ++++WT+M G+A+HG G EAIR+ + M + GV P+ +
Sbjct: 480 MYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEI 539
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+F SL AC HAGL++EG F MK + +EP ++HY C+VDL GR+G L++AY+FI
Sbjct: 540 SFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQ 599
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI P AI+WR+LL AC+ HG++ L E+V + L +L P S D V LSN+YA
Sbjct: 600 MPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPN--------NSGDLVLLSNVYA 651
Query: 442 SAERWPDVESVRKQMKVKRVE 462
+A +W DV S+RK M V+R++
Sbjct: 652 TAGKWKDVASIRKSMIVQRIK 672
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 298 bits (763), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 170/472 (36%), Positives = 263/472 (55%), Gaps = 29/472 (6%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIV 62
P +C +LL+ A ++ +KQIHA I + +L +P + LI ++P S
Sbjct: 16 PLTKCISLLQFCA-SSKHKLKQIHAFSIRHGVSLNNPDMGKHLI-FTIVSLSAPMS--YA 71
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARF 119
+ VFT PN+F +NT+IR D+ +F + + D TY F L + ++
Sbjct: 72 YNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKS 131
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
++ G IH + GF V V +L+H YA+ D S KVF+ M R WN
Sbjct: 132 LNVRE---GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWN 188
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+MING+ + + AL LFR+M V GV+P T+V +LS S++LG LE G V
Sbjct: 189 SMINGFALNGRPNE-----ALTLFREM--SVEGVEPDGFTVVSLLSASAELGALELGRRV 241
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H Y+ K + + +L+D+Y+KCG + A +FS M E+N ++WT++ G+A++G
Sbjct: 242 HVYLLKVGL--SKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNG 299
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G EA+ L M G+ P+ +TF + AC H G+++EG F MK + G+ P I+HY
Sbjct: 300 FGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHY 359
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLL RAG +++AY +I +P++P+A++WR+LL AC +HG + LGE LL L+P
Sbjct: 360 GCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEP 419
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ S D+V LSN+YAS RW DV+ +R+ M V+ PG S+++
Sbjct: 420 K--------HSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVE 463
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
+C LL+ +++ + ++QIHA I + ++ L LI Y SP H
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPPPMSYAHK 74
Query: 65 VFTHFDPP-NLFLFNTLIRCTPP-QDSVLVFAYWVS---KGLLTFDDFTYVFALGSCARF 119
VF+ + P N+F++NTLIR +S+ F+ + GL+ D TY F + +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT-- 132
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP + WN
Sbjct: 133 -TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ING+ K + AL L+ +M + G+KP T+V +LS +++G L G V
Sbjct: 192 SVINGFAENGKPEE-----ALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H YM K ++ L+D+Y++CG ++ A +F M +KN ++WT++ G+A++G
Sbjct: 245 HVYMIKVGLT--RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 300 KGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EAI L M G+ P +TF + AC H G+V+EG F M+ ++ +EP I+H
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ C+VDLL RAG +++AY +I +P++P+ ++WR+LL AC VHGD L E +LQL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
P S D+V LSN+YAS +RW DV+ +RKQM V+ PG S+++
Sbjct: 423 PN--------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 164/469 (34%), Positives = 265/469 (56%), Gaps = 39/469 (8%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+++ ++H +I ++ ++ PL + + L C A+P+S +VF+ P+ +NT+I
Sbjct: 2 NNVYRLHCYIIKSSKQNDPLSLRTLLLSCVA-AAPESLSYARYVFSRIPSPDTIAYNTII 60
Query: 82 RCTP---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R P S+ F S G+ D+FT+ F L +C+R L + +H + K
Sbjct: 61 RSHSRFFPSHSLSYFFSMRSNGI-PLDNFTFPFVLKACSR------LQINLHLHSLIVKY 113
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI-----NGYCSQSKKAK 193
G ++ V LI Y + KVFD+M R S +W+ +I NGY S+
Sbjct: 114 GLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASE----- 168
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF M ++ V P + TM+ V+S S LG LE G V ++ + +
Sbjct: 169 -----ALDLFEKMQLE-DKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVS-- 220
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V +GTAL+DM+S+CG +D ++++F +M +NVLTWTA+ G+ IHG+ EA+ + SMR
Sbjct: 221 VALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRK 280
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV+P+ VTF+ + AC H GLV+EG +F++++ +G++P + HY C+VD+LGRAG L
Sbjct: 281 SGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLN 340
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EAY+F+ +P+KP++I+WR+LL AC H ++ L EKV + ++ + + D
Sbjct: 341 EAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKIS--------SSQNGDL 392
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDG 480
V LSN+Y +A RW + S+R +M+ KR+ EPG S + T H + G
Sbjct: 393 VLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSG 441
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 175/513 (34%), Positives = 268/513 (52%), Gaps = 84/513 (16%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCT---KKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+ QIH I + + + + L+C A P + +++ F P+ F+FNTL
Sbjct: 13 LTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLL----LCFPEPDAFMFNTL 68
Query: 81 IR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
+R P +SV VF + KG + D F++ F + + F SL T G Q+H
Sbjct: 69 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT---GFQMHCQAL 125
Query: 137 KRGFMFNVLVATTLIHFYAS-------------------------------NKDISSGKK 165
K G ++ V TTLI Y D++ ++
Sbjct: 126 KHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGARE 185
Query: 166 VFDQMPMRSSATWNAMINGYCS----QSKK---------------------AKDCAFN-A 199
+FD+M +R+ +WN M+ GY +S K A + +FN +
Sbjct: 186 IFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNES 245
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ FR++ +G+ P + ++ VLS SQ G EFG +HG++EK Y V + A
Sbjct: 246 FLYFREL--QRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGY--SWIVSVNNA 301
Query: 260 LVDMYSKCGCLDNALLIFSRMREKN-VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
L+DMYS+CG + A L+F M+EK +++WT+M G+A+HG+G EA+RL + M GV P
Sbjct: 302 LIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 361
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ ++F SL AC HAGL+EEG F MK + +EP I+HY C+VDL GR+G L++AY+F
Sbjct: 362 DGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDF 421
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +PI P AI+WR+LL AC+ HG++ L E+V + L +L P S D V LSN
Sbjct: 422 ICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPN--------NSGDLVLLSN 473
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YA+A +W DV S+RK M V+R++ S+++
Sbjct: 474 AYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 506
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 179/527 (33%), Positives = 272/527 (51%), Gaps = 82/527 (15%)
Query: 9 CFALLKL-KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
C +LL + K++TT KQIHA ++ L+S P A + +C S S +F
Sbjct: 8 CLSLLNICKSLTT---FKQIHANVLKLGLESDPFIAGKLLHHCAISLS-DSLDYACRLFR 63
Query: 68 HFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+ P++F+ NTLIR PQDS+L F D F++ F + + A +L
Sbjct: 64 YTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAA---NLR 120
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--------------------------- 156
++ +G Q+H G ++ V TTLI Y
Sbjct: 121 SVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVT 180
Query: 157 ----NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------------KAKDCAFNAL 200
D+ G+++FD MP+R+ +WN M+ GY + D +++ +
Sbjct: 181 ACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTM 240
Query: 201 VL--------------FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
++ FR++ G++P +T++ VLS +Q G LEFG +HG++EK+
Sbjct: 241 IVGFAHNGYFEEAFSFFREL--QRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKS 298
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSR-MREKNVLTWTAMATGMAIHGKGNEAI 305
V + AL+D YSKCG + A L+F R M E+N+++WT+M +A+HG G EAI
Sbjct: 299 GLAW--IVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAI 356
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ M + G++P+ + F SL AC HAGLVE+G FD MK + +EP I+HY C+VDL
Sbjct: 357 GIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDL 416
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
GRAG L++AY F+ +PI AI+WR+LL AC++HGDV L E+V + L +L P
Sbjct: 417 YGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPN----- 471
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
S D V LSN YA A +W D SVR+ M +R+ PG S+++
Sbjct: 472 ---NSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEV 515
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/528 (32%), Positives = 273/528 (51%), Gaps = 80/528 (15%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
H C +LL + ++KQ+HA + L + P+ A + L+ + + P + +F
Sbjct: 6 HLCSSLLT--NCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLH-SAVSVPDALDYARRLF 62
Query: 67 THFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
HF P++F+ NTLIR PQ+S++ F + D F++ F L + A + SL
Sbjct: 63 LHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSL 122
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM------------ 170
+ G Q+H G ++ V TTL+ Y+ ++ KKVF++M
Sbjct: 123 ES---GIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVV 179
Query: 171 -------------------PMRSSATWNAMINGYCSQSK-----------KAKDCA---- 196
P R+ +WN M+ GY + KD
Sbjct: 180 TACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWST 239
Query: 197 -----------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+ A FR++ G++P + ++ LS + G +EFG +HG++EK
Sbjct: 240 MIVGFAHNGFFYEAFGFFREL--QQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEK 297
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEA 304
+ ++ V + AL+D YSKCG + A L+F RM EK ++++WT+M G+A+HG G EA
Sbjct: 298 SGFLWM--VSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEA 355
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
I+L M + G++P+ + F S+ AC HAGL+E+G F MK + +EP I+HY C+VD
Sbjct: 356 IQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVD 415
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
L GRAG L++AY FI+ +P+ P AI+WR+LL AC++HG+V L E+V + L +L P
Sbjct: 416 LYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPN---- 471
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
S D V LSNIYA A +W DV +VR+ M +R+ PG S+++
Sbjct: 472 ----NSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEV 515
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 264/478 (55%), Gaps = 41/478 (8%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L KL+ + +KQ+HAQ++T L Y + +K AS + I F H
Sbjct: 9 LQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTYAFTI----FNHIPN 64
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF-----DDFTYVFALGSCARFCSLSTLW 126
P LFL+NTLI + A+ + +LT + FT+ +CA S W
Sbjct: 65 PTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACA-----SHPW 119
Query: 127 L--GRQIHVHVTKRGFM---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L G +H HV K F+ ++ V +L++FYA + + +FDQ+ ATWN M
Sbjct: 120 LQHGPPLHAHVLK--FLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTM 177
Query: 182 INGYC--------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ Y S S + D + AL LF DM +S +KP + T+V ++S S LG L
Sbjct: 178 LAAYAQSASHVSYSTSFEDADMSLEALHLFCDM--QLSQIKPNEVTLVALISACSNLGAL 235
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
GA HGY+ + + + F+GTALVDMYSKCGCL+ A +F + +++ + AM
Sbjct: 236 SQGAWAHGYVLRNNL--KLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIG 293
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G A+HG GN+A+ L +M+ + P+ T AC H GLVEEGL +F++MK G+E
Sbjct: 294 GFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGME 353
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P ++HY C++DLLGRAG L+EA + +P+KP+AILWRSLL A +HG++ +GE K
Sbjct: 354 PKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKH 413
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L++L+PE TS ++V LSN+YAS RW DV+ VR MK V+ PG S+++
Sbjct: 414 LIELEPE--------TSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVE 463
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/460 (36%), Positives = 256/460 (55%), Gaps = 26/460 (5%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T+ +KQI A I +P + +LI +CT + S H +F P++ LFN
Sbjct: 46 TSLRELKQIQAYTIKTHQNNPTVLTKLIN-FCTSNPTIASMDHAHRMFDKIPQPDIVLFN 104
Query: 79 TLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
T+ R P ++L+ + + GLL DD+T+ L +CAR L L G+Q+H
Sbjct: 105 TMARGYARFDDPLRAILLCSQVLCSGLLP-DDYTFSSLLKACAR---LKALEEGKQLHCL 160
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K G N+ V TLI+ Y + D+ + ++VFD++ +NA+I C+++ + +
Sbjct: 161 AVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITS-CARNSRPNE 219
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
AL LFR++ SG+KPTD TM+ LS + LG L+ G +H Y++K + + V
Sbjct: 220 ----ALALFREL--QESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGF--DQYV 271
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+ TAL+DMY+KCG LD+A+ +F M ++ W+AM A HG G++AI +L M+
Sbjct: 272 KVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKA 331
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
V+P+ +TF + AC H GLVEEG F +M ++G+ P IKHY C++DLLGRAG LEE
Sbjct: 332 KVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEE 391
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A FI +PIKP ILWR+LLS+C+ HG+V + + V + + +L D+V
Sbjct: 392 ACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDS--------HGGDYV 443
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
LSN+ A RW DV +RK M K PG S ++
Sbjct: 444 ILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNN 483
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/489 (35%), Positives = 267/489 (54%), Gaps = 57/489 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH--FDP- 71
L+ + + QIH QL LK + QL T S ++V+ +T FD
Sbjct: 17 LERCSNMKELMQIHGQL----LKKGTIRNQLT--VSTLLVSYARIELVNLAYTRVVFDSI 70
Query: 72 --PNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
PN ++NT++R P+ ++L++ + + + +T+ F L +C+ +LS
Sbjct: 71 SSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSV-PHNSYTFPFLLKACS---ALSAF 126
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+QIH H+ KRGF V +L+ YA + +I S +F+Q+P R +WN MI+GY
Sbjct: 127 EETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGY 186
Query: 186 CS-----------QSKKAKDCAF---------------NALVLFRDMLVDVSGVKPTDTT 219
Q+ K+ AL L + MLV +G+KP T
Sbjct: 187 IKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLV--AGIKPDSIT 244
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ C LS + LG LE G +H Y+EK + D +G L DMY KCG ++ ALL+FS+
Sbjct: 245 LSCSLSACAGLGALEQGKWIHTYIEKNEI--KIDPVLGCVLTDMYVKCGEMEKALLVFSK 302
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ +K V WTA+ G+AIHGKG EA+ M+ G+ PN++TFT++ AC HAGL EEG
Sbjct: 303 LEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEG 362
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
LF++M S + ++P ++HY C+VDL+GRAG L+EA FI +P+KP+A +W +LL+AC
Sbjct: 363 KSLFESMSSVYNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQ 422
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H LG+++GKIL++L P+ S ++ L++IYA+A W V VR Q+K +
Sbjct: 423 LHKHFELGKEIGKILIELDPD--------HSGRYIHLASIYAAAGEWNQVVRVRSQIKHR 474
Query: 460 RVETEPGSS 468
+ PG S
Sbjct: 475 GLLNHPGCS 483
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/473 (35%), Positives = 266/473 (56%), Gaps = 29/473 (6%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
+C LL+ +++ + ++QIHA I + ++ L LI Y SP H
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPPPMSYAHK 74
Query: 65 VFTHFDPP-NLFLFNTLIRCTPP-QDSVLVFAYWVS---KGLLTFDDFTYVFALGSCARF 119
VF+ + P N+F++NTLIR +S+ F+ + GL+ D TY F + +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT-- 132
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP + WN
Sbjct: 133 -TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ING+ K + AL L+ +M + G+KP T+V +LS +++G L G V
Sbjct: 192 SVINGFAENGKPEE-----ALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H YM K ++ L+D+Y++CG ++ A +F M +KN ++WT++ G+A++G
Sbjct: 245 HVYMIKVGLT--RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 300 KGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EAI L M G+ P +TF + AC H G+V+EG F M+ ++ +EP I+H
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ C+VDLL RAG +++AY +I +P++P+ ++WR+LL AC VHGD L E +LQL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P S D+V LSN+YAS +RW DV+ +RKQM V+ PG S+++
Sbjct: 423 PN--------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVE 467
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 167/461 (36%), Positives = 251/461 (54%), Gaps = 29/461 (6%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
K+I+ +H+ Q+ +Q+I N + L +LI + S + + D
Sbjct: 51 KSISNHAHMNQMLSQMIMNYIPIDHLNLMKLIDFSVSSHGFAASALLFTQFYGFIDSD-- 108
Query: 75 FLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
L N++IRC + SV ++ G+ D T+ L S A+ C LG+
Sbjct: 109 -LCNSMIRCYTDSNKHLHSVFIYTQMWKNGIFP-DSSTFPTVLKSVAQLCRQE---LGKA 163
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH + + GF NV V+T L++ Y + +S ++VFD++P R+ +WNA+I GY
Sbjct: 164 IHCCIIQMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRM 223
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
K + +FR+M ++G KP + TMV VL + LG L G + Y++
Sbjct: 224 FRK-----VIDVFREM--QIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRL 276
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+VF+GTAL+DMY+KCG +D A IF MR KNV TW + +G A++G+G A++
Sbjct: 277 --NVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSR 334
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M KP+ VTF + ACCH GLV EG F +MK ++G+ P I+HY C+VDLLGRAG
Sbjct: 335 MIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAG 394
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L+EA I + ++PD I+WR LL AC +HG++ LGE K LL+L+P
Sbjct: 395 FLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPN--------NG 446
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
E++V L+N+YA +RW V VR+ M +RV PG S ++
Sbjct: 447 ENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIE 487
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 250/438 (57%), Gaps = 39/438 (8%)
Query: 43 AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVS---- 98
+ LI +Y AS + +F + + ++N +I + + W+
Sbjct: 158 SSLIHMY----ASCRDVAAAQLLFDAVEENGVVMWNAII------TAYMKNGNWMEVVEM 207
Query: 99 -KGLL----TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF 153
KG+L FD+ T V + +C R + LG+ + +V ++G + N + T LI
Sbjct: 208 FKGMLEVGVAFDEITLVSVVTACGR---IGDAKLGKWVAEYVDEKGLVRNRNLMTALIDM 264
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
YA ++ +++FD M R W+AMI+GY +Q+ + ++ AL LF +M ++ V
Sbjct: 265 YAKCGELGKARRLFDGMQSRDVVAWSAMISGY-TQADQCRE----ALALFSEM--QLAEV 317
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+P D TMV VLS + LG LE G VH Y+ + + +GTALVD Y+KCGC+D+A
Sbjct: 318 EPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRL--SLTIILGTALVDFYAKCGCIDDA 375
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ F M KN TWTA+ GMA +G+G EA+ L SMR ++P VTF + AC H+
Sbjct: 376 VEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHS 435
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
LVEEG FD+M +G++P +HY C+VDLLGRAG ++EAY FI +PI+P+A++WR+
Sbjct: 436 CLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRA 495
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LLS+C VH +V +GE+ K ++ L P S D++ LSNIYAS +W + +R
Sbjct: 496 LLSSCAVHKNVEIGEEALKQIVSLNPS--------HSGDYILLSNIYASVGQWKNAAMIR 547
Query: 454 KQMKVKRVETEPGSSILQ 471
K+MK + +E PG S+++
Sbjct: 548 KEMKDRGIEKTPGCSLIE 565
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 119/424 (28%), Positives = 202/424 (47%), Gaps = 30/424 (7%)
Query: 19 TTPSHIKQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL-- 74
T P ++ Q+HA LI + SP + L++ ASP +F P L
Sbjct: 27 TDPRYLPQLHAALIKSGELTGSPKCFHSLLE---AAAASPTLLPYAVSLFRLGPRPPLST 83
Query: 75 ----FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
L L+ P+D++ +F + + D T AL SC+R C+L +GR
Sbjct: 84 PCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLD---VGRG 140
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
I + KRG M + V ++LIH YAS +D+++ + +FD + WNA+I Y
Sbjct: 141 IQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGN 200
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ +F+ ML GV + T+V V++ ++G + G V Y+++ +
Sbjct: 201 -----WMEVVEMFKGML--EVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVR 253
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
++ TAL+DMY+KCG L A +F M+ ++V+ W+AM +G + EA+ L
Sbjct: 254 NRNLM--TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSE 311
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M+ V+PN VT S+ +AC G +E G + ++ K + I + +VD + G
Sbjct: 312 MQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-RLSLTIILGTALVDFYAKCG 370
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVDV- 426
+++A +P+K ++ W +L+ A N G AL ++P +VTF+ V
Sbjct: 371 CIDDAVEAFESMPVK-NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVL 429
Query: 427 -ACT 429
AC+
Sbjct: 430 MACS 433
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 258/454 (56%), Gaps = 30/454 (6%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
+KQIHA++I + + ++C V VF P+ F+FNT+IR
Sbjct: 4 LKQIHARVIQLGFEQNRFVVGKVIVFCAAAEHGDMNYAVS-VFEKIGDPDAFIFNTMIRG 62
Query: 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P+ + + +GL++ D FT+ F L C + L + LGR +H KRG
Sbjct: 63 FGKANDPRKAFDYYKRMQERGLVS-DSFTFSFLLKVCGQ---LGLVLLGRLMHCSTLKRG 118
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN- 198
+V V TL+H Y + KDI + +++F+++P WN +I+ + S K FN
Sbjct: 119 LNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGK------FNE 172
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL +F ML G++P + T V +LS S LG L+FG VH + + +V
Sbjct: 173 ALEMFSRMLK--FGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEV--NN 228
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-K 317
+L+DMY+KCG L A IF+ M +KN +TW M G+A HG NEA+ L +M + +
Sbjct: 229 SLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEALALFSNMLEQKLWA 288
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ +TF + +AC H G+V++G FD MK ++ ++P IKHY C+VD+LGRAG +EEAY
Sbjct: 289 PDDITFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYR 348
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I +P++ +AI+WR+LL+AC +HG+V LG++V K LL+L+P+ S D+V L+
Sbjct: 349 LISNMPMQCNAIVWRTLLAACRLHGNVELGKQVRKQLLELEPD--------HSSDYVLLA 400
Query: 438 NIYASAERWPDVESVRKQMKVKRVET-EPGSSIL 470
N YASA RW + VRK M + V+ EPG+S++
Sbjct: 401 NTYASAGRWNEAMRVRKTMHKRGVQKPEPGNSVV 434
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 254/472 (53%), Gaps = 65/472 (13%)
Query: 50 CTKKASPQSTKIVHF------------VFTHFDPPNLFLFNTLIRCTPP----QDSVLVF 93
C ++S +T+IVH VF PNL L N +I+ +D+V V+
Sbjct: 37 CLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNLHLHNAMIKAYAQNHLHRDAVEVY 96
Query: 94 AYWV-------SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+ + G D FTY F L +C +L+ LGRQ+H HV + G + +V
Sbjct: 97 VRMLRCLPHPSTAGFSVGDRFTYPFLLKACG---ALAASRLGRQVHAHVARSGCESHAVV 153
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQSKKAKDCAFN------ 198
+LI Y D+S+ +K FD M + +WN +I+ + Q ++A++ ++
Sbjct: 154 QNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTV 213
Query: 199 ------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
A+ +FR L+ + G +P D ++V VL +QLG LE G ++
Sbjct: 214 VSWTALVSGYTAVGDFTGAVEVFR--LMQMEGFEPDDVSIVAVLPACAQLGALELGRWIY 271
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y K + V+I AL++MY+KCGC++ AL +F M EK+V++W+ G+A HG+
Sbjct: 272 AYCSKHGML--GKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGR 329
Query: 301 GNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
EA+RL + M R+ V PN +TF L +AC HAGLV+EGL D MK +GVEP ++HY
Sbjct: 330 AREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHY 389
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLLGR+G ++ A + I G+P+ PD +W SLLSAC HGDV + L++L+P
Sbjct: 390 GCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVELEP 449
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
DV + V L+N+Y +A RW +V S RK+++ + PG S+++
Sbjct: 450 G----DVG----NLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIE 493
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 255/461 (55%), Gaps = 23/461 (4%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
+K+++ + + QIHA +I L P + Q F P +
Sbjct: 10 IKSVSHKTRLLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSHPLV 69
Query: 75 FLFNTLIR-CT---PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+NT+IR C+ PQ +L++ +G+ D + FA+ SC RF L G Q
Sbjct: 70 SHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAA-DPLSSSFAVKSCIRFLYLPG---GVQ 125
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H ++ K G ++ L+ T ++ Y+ + KVFD+MP R + WN MI+ C ++
Sbjct: 126 VHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMIS-CCIRNN 184
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ +D AL LF M +P D T + +L + L LEFG +HGY+ + Y
Sbjct: 185 RTRD----ALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGY-- 238
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ + + +L+ MYS+CGCLD A +F M KNV++W+AM +G+A++G G EAI +
Sbjct: 239 RDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEE 298
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M GV P+ TFT + +AC ++G+V+EG+ F M ++GV P++ HY C+VDLLGRAG
Sbjct: 299 MLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAG 358
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY IM + +KPD+ +WR+LL AC +HG V LGE+V L++L+ + +
Sbjct: 359 LLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQ--------EA 410
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V L NIY+SA W V VRK MK K ++T PG S ++
Sbjct: 411 GDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIE 451
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 171/465 (36%), Positives = 255/465 (54%), Gaps = 27/465 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T+ + +KQI A I L+S + +LI +CT + H +F +
Sbjct: 36 LSKCTSLNELKQIQAYTIKTNLQSDISVLTKLIN-FCTLNPTTSYMDHAHHLFDQILDKD 94
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ LFN + R P + +F + GLL DD+T+ L +CA S L G
Sbjct: 95 IILFNIMARGYARSNSPYLAFSLFGELLCSGLLP-DDYTFSSLLKACA---SSKALREGM 150
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+H K G N+ + TLI+ YA D+++ + VFD+M ++NA+I GY S
Sbjct: 151 GLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSS 210
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + AL LFR++ S ++PTD TM+ V+ + LG L+ G +H Y++K +
Sbjct: 211 QPNE-----ALSLFREL--QASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGF- 262
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ V + TAL+DM++KCG L +A+ IF MR ++ W+AM A HG G +AI + +
Sbjct: 263 -DKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFE 321
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M+ GV+P+ +TF L AC HAGLVE+G F +M +G+ P IKHY C+VDLLGRA
Sbjct: 322 EMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRA 381
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
GHL+EAYNF+ + IK ILWR+LLSAC+ HG+V + ++V + + +L
Sbjct: 382 GHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDD--------AH 433
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
D+V LSN+YA RW DV +RK MK + V PG S ++
Sbjct: 434 GGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNN 478
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 178/468 (38%), Positives = 266/468 (56%), Gaps = 33/468 (7%)
Query: 23 HIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFLFNT 79
H+ QIHAQ++ + L+ L +LI+ +C+ S + ++ D PP FL
Sbjct: 35 HVSQIHAQILVSGLQQDTNLLTELIR-FCSLSPSKHLSYAHSLLYNSLDSLPPWNFLIRG 93
Query: 80 LIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P++++ VF +G+ ++FT+ F L +CA +L G+Q+H + K G
Sbjct: 94 YASGDAPKNAIRVFHRMRKEGVGP-NNFTFPFVLKACATCLALEE---GKQVHADIFKFG 149
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+V V L+H Y S K I KVFD+MP+RS +WN++I C Q+ D +N
Sbjct: 150 LDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITA-CVQNLWLGDAIWN- 207
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGT 258
V +D G +P +TTMV +LS+ +Q+G L G +H +E+ + + +GT
Sbjct: 208 FVKMKDF-----GFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTL---NCQLGT 259
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVK 317
ALVDMY+K G L A L+F RM +KNV TW+AM G+A HG G E + L M++ +
Sbjct: 260 ALVDMYAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLAQHGFGKEGLELFLKMKESVSIC 319
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN VTF + AC HAGLV+EG F M+ + G+ P + HY +VD+LGRAG+LEEAYN
Sbjct: 320 PNYVTFLGVLCACSHAGLVDEGFRYFYEMEHRHGIRPMVIHYGAMVDILGRAGNLEEAYN 379
Query: 378 FIMGIPIKPDAILWRSLLSACNVH-GDVALG--EKVGKILLQLQPEVTFVDVACTSEDFV 434
F+M +P +PD ILWR+LLSACN+H +V+ G +KV K LL+L+P SE+FV
Sbjct: 380 FLMDVPFQPDPILWRTLLSACNIHNANVSDGLVDKVRKKLLELEPR--------RSENFV 431
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSS--ILQTTTHYTLDG 480
++N+YA A W +VR+ M+ ++ G S +L+ + H G
Sbjct: 432 IIANMYADAGMWETATNVRRTMRDGGLKKIGGESCIVLEGSIHQFFSG 479
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 263/469 (56%), Gaps = 39/469 (8%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+++ ++H +I ++ ++ PL + + L C A+P+S +VF+ P+ +NT+I
Sbjct: 2 NNVYRLHCYIIKSSKQNDPLSLRTLLLSCVA-AAPESLSYARYVFSRIPSPDTIAYNTII 60
Query: 82 RCTP---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R P S+ F S G+ D+FT+ F L +C+R L + +H + K
Sbjct: 61 RSHSRFFPSHSLFYFFSMRSNGI-PLDNFTFPFVLKACSR------LQINLHLHSLIVKY 113
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI-----NGYCSQSKKAK 193
G ++ V LI Y + KVFD+M R S +W+ +I NGY S+
Sbjct: 114 GLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASE----- 168
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF M ++ V P + TM+ V+S S LG LE G V ++ +
Sbjct: 169 -----ALDLFEKMQLE-DKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVS-- 220
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V +GTAL+DM+S+CG +D ++++F +M +NVLTWTA+ G+ +HG+ EA+ + SMR
Sbjct: 221 VALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRK 280
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV+P+ VTF+ + AC H GLV+EG +F++++ + ++P + HY C+VD+LGRAG L
Sbjct: 281 SGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLN 340
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EAY+F+ +P+KP++I+WR+LL AC H ++ L EKV + ++ + + D
Sbjct: 341 EAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKIS--------SSQNGDL 392
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDG 480
V LSN+Y +A RW + S+R +M+ KR+ EPG S + T H + G
Sbjct: 393 VLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSG 441
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 261/512 (50%), Gaps = 84/512 (16%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFTHFDPPNLFLFNTLI 81
KQIHAQ+ L + PL + L+C S +H+ +F HF P+ F+ NTLI
Sbjct: 19 KQIHAQICKTGLHTDPLVFGKLLLHCAITIS----DALHYALRLFHHFPNPDTFMHNTLI 74
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R P S+ F + L+ D FT+ FAL + A L G Q+H +
Sbjct: 75 RSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRP---GIQLHSQAFR 131
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQM--------------------------- 170
GF ++ V TTLI YA D S ++VFD+M
Sbjct: 132 HGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDV 191
Query: 171 ----PMRSSATWNAMINGYCSQSKKA--------------------------KDCAFNAL 200
P+R+ +WN M+ GY + C A
Sbjct: 192 FGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAF 251
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
FR++L + ++ + ++ VLS +Q G EFG +HG++EK ++ V AL
Sbjct: 252 GFFRELLREE--IRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSV--NNAL 307
Query: 261 VDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
+D YSKCG + A L+F M +++++WT++ G+A+HG G EAI+L M + GV+P+
Sbjct: 308 IDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPD 367
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+TF SL AC H+GLVEEG LF MK+ +G+EP I+HY C+VDL GRA L++AY FI
Sbjct: 368 GITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFI 427
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P+ P+AI+WR+LL AC++HG++ + E V L ++ P+ S D V LSN+
Sbjct: 428 CEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPD--------NSGDHVLLSNV 479
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YA A +W DV S+R+ M ++ PG S+++
Sbjct: 480 YAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIE 511
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 170/487 (34%), Positives = 266/487 (54%), Gaps = 49/487 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L+ + +KQIH QL+ ++ ++L+ Y + + S + VF PN
Sbjct: 18 LERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFS--NLTYARMVFDRISSPN 75
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++NT+IR P++++L++ + + + +T+ F L +C+ +LS L
Sbjct: 76 TVMWNTMIRAYSNSNDPEEALLLYHQMLHHSI-PHNAYTFPFLLKACS---ALSALAETH 131
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-- 187
QIHV + KRGF V +L+ YA + I S +FD +P R +WN MI+GY
Sbjct: 132 QIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCG 191
Query: 188 ---------QSKKAKDCAF---------------NALVLFRDMLVDVSGVKPTDTTMVCV 223
Q+ K+ AL L + MLV +G+KP T+ C
Sbjct: 192 NVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLV--AGIKPDKITLSCS 249
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS + LG LE G +H Y+ K + D +G AL+DMY KCG + ALL+FS++ +K
Sbjct: 250 LSACAGLGALEQGKWIHTYIGKN--KIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKK 307
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
V TWTA+ G A+HGKG+EA+ M+ G+KP + TFT++ AC H GLVEEG LF
Sbjct: 308 CVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLF 367
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++M + + ++P ++HY C+VDLLGRAG L+EA F+ +PIKP+A +W SLL+AC++H
Sbjct: 368 ESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKH 427
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ LG+++GK L++L PE ++ L++I+A+A W + VR +K K +
Sbjct: 428 LELGKEIGKFLIELDPE--------HDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLN 479
Query: 464 EPGSSIL 470
PG S +
Sbjct: 480 LPGCSTI 486
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 258/464 (55%), Gaps = 30/464 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFTHFDP 71
+K+ + +H+ QIHA +I +L + I L +A+ ++ + + VF+
Sbjct: 75 IKSCSKKTHLLQIHAHIIRTSL----IQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMK 130
Query: 72 PNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P+ +N +IR P+ ++ +G+ + + F + SC R +S+L
Sbjct: 131 PSGSQYNVMIRAYSMSHSPEQGFYLYREMRRRGVPP-NPLSSSFVMKSCIR---ISSLMG 186
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G QIH + + G + L+ TTL+ Y+ KVFD++P + +WN +I+ C
Sbjct: 187 GLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLIS-CCI 245
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+++ +D AL +F M G +P D T + +L + LG LEFG VH Y+E+
Sbjct: 246 HNRRTRD----ALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHG 301
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y + + + +L+ MYS+CG L+ A IF RM E+NV++W+AM +G A+HG G EAI
Sbjct: 302 Y--DGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEA 359
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ GV P+ T T + +AC H GLV++GL FD M +G+EP+I HY C+VDLLG
Sbjct: 360 FEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLG 419
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L++AY IM + IKPD+ LWR+LL AC +H LGE+V L++L+ A
Sbjct: 420 RAGLLDQAYQLIMSMVIKPDSTLWRTLLGACRIHRHATLGERVIGHLIELK--------A 471
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V L NIY+S W V +RK MK K ++T PG S ++
Sbjct: 472 QEAGDYVLLLNIYSSVGNWDKVTDLRKFMKEKGIQTSPGCSTIE 515
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 161/414 (38%), Positives = 242/414 (58%), Gaps = 31/414 (7%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF + P+ FL+NT+IR P+ + + KG + D+FTY F + C +
Sbjct: 7 VFGKIENPDGFLWNTMIRGLGRTRQPEKAFEFYKRMQVKGEV-LDNFTYSFLVKVCGQ-- 63
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L + LG+QIH +V K G +V V TL+H Y KDI + +F++MP WN
Sbjct: 64 -LGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATHLFEEMPKSYLVAWNT 122
Query: 181 MI--NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
+I N YC + K+A + F L SG+KP D T V LS + LG L+ G
Sbjct: 123 IIDCNVYCGRYKEAIELFFRMLQ---------SGLKPDDATFVVTLSACAALGELDIGRR 173
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VH ++ T N V + +L+DMY+KCG ++ A IF++M+ +N+++W M G+A+H
Sbjct: 174 VHSCIDHTGL--GNVVSVSNSLIDMYAKCGVVEAAYEIFNKMKGRNIVSWNTMILGLAMH 231
Query: 299 GKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
G G+EA+ L M + + PN VTF + AC H G+VEEG FD M+ + ++P IK
Sbjct: 232 GHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEGRRYFDIMRRDYNIQPTIK 291
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY +VD+LGRAG +EEAY I +PI+ ++I+WR+LL+AC VHG++ L E+V + LL+L
Sbjct: 292 HYGSMVDILGRAGLVEEAYRLIKSMPIESNSIVWRTLLAACRVHGNLELAEQVRQQLLEL 351
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET-EPGSSIL 470
+P+ S D+V L+N+YASA +W V VRK M ++ V+ +PG+S +
Sbjct: 352 EPD--------HSSDYVLLANMYASAGQWNKVVRVRKSMHIRGVQKPKPGNSYI 397
>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
Length = 574
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 263/474 (55%), Gaps = 49/474 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPP 72
L+ + ++QIH Q++ L + A + +C ASP S + + VF P
Sbjct: 25 LQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFC---ASPNSGSLAYARTVFDRIFRP 81
Query: 73 NLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
N F++NT+IR P++++L++ + + + + +T+ F L +C+ S+S L
Sbjct: 82 NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSV-PHNAYTFPFLLKACS---SMSALEET 137
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+QIH H+ K GF + +L++ Y+ + DI S + +FDQ+ R +
Sbjct: 138 QQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT------------- 184
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
AL LF M +G+K + +V L + LG+L+ G +H Y++K +
Sbjct: 185 ---------EALNLFHRM--QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK--H 231
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E D +G L+DMY+KCG L+ A+ +F +M EK V WTAM +G AIHG+G EA+
Sbjct: 232 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 291
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ GV+PN +TFT + AC HAGLV E LF++M+ G +P I+HY C+VDLLGR
Sbjct: 292 MKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGR 351
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EA I +P+KP+A +W +LL+AC++HG++ LG+++GKIL+Q+ P
Sbjct: 352 AGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP--------G 403
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDG 480
++ L++I+A+A W VR+QMK + V PG S++ T H L G
Sbjct: 404 HGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAG 457
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 165/458 (36%), Positives = 257/458 (56%), Gaps = 32/458 (6%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP---NLFLFNTLIR 82
QIH+ ++ L PL + + V F PP + FLFNTLIR
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199
Query: 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
T + L F + + ++ + FT+ F L +CA + L LG +H + K
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACA---GMMRLELGGAVHASMVKF 256
Query: 139 GFMFNVLVATTLIHFYASN-KDISSG----KKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
GF + V TL+H Y +D SSG KKVFD+ P++ S TW+AMI GY A+
Sbjct: 257 GFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSAR 316
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
A+ LFR+M V+GV P + TMV VLS + LG LE G + Y+E+ M
Sbjct: 317 -----AVTLFREM--QVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIM--RS 367
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V + AL+DM++KCG +D A+ +F M+ + +++WT+M G+A+HG+G EA+ + D M +
Sbjct: 368 VELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMME 427
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV P+ V F + +AC H+GLV++G + F+ M++ + + P I+HY C+VD+L RAG +
Sbjct: 428 QGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVN 487
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA F+ +P++P+ ++WRS+++AC+ G++ LGE V K L++ +P ++
Sbjct: 488 EALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPS--------HESNY 539
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYA RW VR+ M VK + PGS++++
Sbjct: 540 VLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIE 577
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 272/523 (52%), Gaps = 81/523 (15%)
Query: 19 TTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T +KQ+HA LI N L S + +LI + + + H +F P++F++
Sbjct: 24 TNFRSLKQLHAFLIVNGLNSTTSVLRELI--FVSAIVVSGTMDYAHQLFAQISQPDIFMW 81
Query: 78 NTLIRCT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+IR + P +V ++ ++G+ D FT+ F L +C + LS + LG IH
Sbjct: 82 NTMIRGSAQTLKPATAVSLYTQMENRGVRP-DKFTFSFVLKACTK---LSWVKLGFGIHG 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGK----------------------------- 164
V K GF N V TLI+F+A+ D+++ +
Sbjct: 138 KVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDV 197
Query: 165 --KVFDQMPMRSSATWNAMINGYCSQSKKAKD------------CAFNAL----VLFR-- 204
++FD+MPM+ +WN MI Y + K +NA+ VL R
Sbjct: 198 ARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLN 257
Query: 205 -------DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND--VF 255
D + D+ G +P D TM+ +LS S+ LG LE G +H F M D V
Sbjct: 258 KEALEMFDAMRDL-GQRPDDVTMLSILSASADLGDLEIGKKIH---RSIFDMCCGDLSVL 313
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ AL+DMY+KCG + NAL +F MR+K+ +W ++ G+A+HG E+I L M
Sbjct: 314 LSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLK 373
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KPN +TF ++ AC HAG V EG F+ MK+ + +EP+IKHY C+VD+LGRAG L EA
Sbjct: 374 MKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEA 433
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
++FI + I+P+AI+WR+LL AC VHGDV LG + + LL+++ + S D+V
Sbjct: 434 FDFIDTMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKD--------ESGDYVL 485
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
LSNIYAS W V+ VRK M V+ + G S++ + + +
Sbjct: 486 LSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDNSFLM 528
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 137/317 (43%), Gaps = 23/317 (7%)
Query: 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDI 160
+F+ F C F SL +Q+H + G V LI A + +
Sbjct: 10 SFNRFQQSSLWQKCTNFRSL------KQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTM 63
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
++F Q+ WN MI G K A A+ L+ M + GV+P T
Sbjct: 64 DYAHQLFAQISQPDIFMWNTMIRGSAQTLKPA-----TAVSLYTQM--ENRGVRPDKFTF 116
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VL ++L ++ G +HG + K+ + +++ F+ L+ ++ CG L A +F
Sbjct: 117 SFVLKACTKLSWVKLGFGIHGKVLKSGF--QSNTFVRNTLIYFHANCGDLATARALFDAS 174
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
++ V+ W+A+ G A GK + A +L D M + V++ + A G +E+
Sbjct: 175 AKREVVPWSALTAGYARRGKLDVARQLFDEM----PMKDLVSWNVMITAYAKHGEMEKAR 230
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
LFD + K V + ++ L + E ++ + + +PD + S+LSA
Sbjct: 231 KLFDEVPKKDVVTWNAMIAGYVLSRLNKEAL--EMFDAMRDLGQRPDDVTMLSILSASAD 288
Query: 401 HGDVALGEKVGKILLQL 417
GD+ +G+K+ + + +
Sbjct: 289 LGDLEIGKKIHRSIFDM 305
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 263/474 (55%), Gaps = 32/474 (6%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
RC +L + + + K IHA I N L + +C S S +F+
Sbjct: 6 RCISLAQ--SCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSG-SLSYASLIFS 62
Query: 68 HFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
PNLF +NTLIR + PQ ++ F + + D T+ F + +C +
Sbjct: 63 QIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACT-----N 117
Query: 124 TLW--LGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+LW LG+QIH V K G + V T L+ FYA + +K+FD++P WN
Sbjct: 118 SLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNV 177
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++NGY + A AL FR+MLV SGV+P + + L +QLG L+ G +H
Sbjct: 178 LLNGYVRRG-----LAPEALNAFRNMLV--SGVEPDEFCLTTALKGCAQLGALQQGKWIH 230
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+ K ++ E DVFIGTALVDMY+KCGC+D ++ +F M ++NV +W+AM G A+HG
Sbjct: 231 EYVTKRKWL-EADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGH 289
Query: 301 GNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+A++ L+ M+ + G++P+ V + AC HAGL EEG L +NM++++G+ P +HY
Sbjct: 290 VRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHY 349
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
SC+VDLL RAG L+EA I +P+KP A +W +LLS C H +V L E + LL +
Sbjct: 350 SCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVG- 408
Query: 420 EVTFVDVACTSED--FVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ T ED +V LSNIY +A++ D +R+ + KR++T+PG S+++
Sbjct: 409 -----NGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIE 457
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 169/493 (34%), Positives = 267/493 (54%), Gaps = 61/493 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L++ TT SH+K IHA LI A LI + K + + VF PN
Sbjct: 22 LESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQ----VFYQIQNPN 77
Query: 74 LFLFNTLIRC-TPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
LF++N+ IR + +D F ++V + L D+ TY F + +C + SL +G Q
Sbjct: 78 LFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLD---MGIQ 134
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYAS-------------------------------NKD 159
H + + GF +V V +L+ Y++ + D
Sbjct: 135 AHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGD 194
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDT 218
++S +K+FD+MP ++ TW+ MI+GY AK+ F+ A+ L+ L+ GV +T
Sbjct: 195 VTSARKLFDKMPEKNLVTWSVMISGY------AKNSFFDKAIELY--FLLQSEGVHANET 246
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
MV V++ + LG LE G H Y+ + M N + +GTALVDMY++CG +D A+ +F
Sbjct: 247 VMVSVIASCAHLGALELGERAHDYILRN-KMTVN-LILGTALVDMYARCGSIDKAIWVFD 304
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
++ ++ L+WT + G A+HG +A+ M G+ P +TFT++ +AC H GLVE
Sbjct: 305 QLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVER 364
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
GL LF++MK + +EP ++HY C+VDLLGRAG L EA F+ +P+KP+A +W +LL AC
Sbjct: 365 GLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGAC 424
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+H + + E+ GK L++L+PE S +V LSNIYA +W +VE++R+ MK
Sbjct: 425 RIHKNSEIAERAGKTLIELKPE--------HSGYYVLLSNIYARTNKWENVENIRQMMKE 476
Query: 459 KRVETEPGSSILQ 471
+ V PG ++ +
Sbjct: 477 RGVVKPPGYTLFE 489
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 263/475 (55%), Gaps = 32/475 (6%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
RC +L + + + K IHA I N L + +C S S +F+
Sbjct: 6 RCISLAQ--SCSNMRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSG-SLSYASLIFS 62
Query: 68 HFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
PNLF +NTLIR + PQ ++ F + + D T+ F + +C +
Sbjct: 63 QIQNPNLFAYNTLIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACT-----N 117
Query: 124 TLW--LGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+LW LG+QIH V K G + V T L+ FYA + +K+FD++P WN
Sbjct: 118 SLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNV 177
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++NGY + A AL FR+MLV SGV+P + + L +QLG L+ G +H
Sbjct: 178 LLNGYVR-----RGLAPEALNAFRNMLV--SGVEPDEFCLTTALKGCAQLGALQQGKWIH 230
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+ K ++ E DVFIGTALVDMY+KCGC+D ++ +F M ++NV +W+AM G A+HG
Sbjct: 231 EYVTKRKWL-EADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGH 289
Query: 301 GNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+A++ L+ M+ + G++P+ V + AC HAGL EEG L +NM++++G+ P +HY
Sbjct: 290 VRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYGILPKHEHY 349
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
SC+VDLL RAG L+EA I +P+KP A +W +LLS C H +V L E + LL +
Sbjct: 350 SCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWGALLSGCRTHNNVDLAELAARELLMVG- 408
Query: 420 EVTFVDVACTSED--FVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+ T ED +V LSNIY +A++ D +R+ + KR++T+PG S+++
Sbjct: 409 -----NGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEV 458
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 250/466 (53%), Gaps = 39/466 (8%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNTLI 81
+KQIHAQ++ L P A +L SP S VF PNL+ +NTLI
Sbjct: 50 QLKQIHAQMLRTGLFFDPFSAS--RLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLI 107
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + P S+L+F + + D FT+ F + + + L L+ G+ H V K
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE---LEELFTGKAFHGMVIK 164
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
+V + +LIHFYA ++ G +VF P R +WN+MI + C
Sbjct: 165 VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGG-----CPE 219
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LF++M + VKP TMV VLS ++ EFG VH Y+E+ + +
Sbjct: 220 EALELFQEM--ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIX--ESLTLS 275
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM------------ATGMAIHGKGNEAI 305
A++DMY+KCG +++A +F +M EK++++WT M A G+A+HG G +AI
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAI 335
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L M++ VKPNAVTFT++ AC H GLVEEG F+ M+ +GV P +KHY+C+VD+
Sbjct: 336 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDI 395
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG LEEA I +P+ P A +W +LL AC +H +V L E+ L++L+P
Sbjct: 396 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEP------ 449
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V LSNIYA A +W V +RK M+ ++ EPG S ++
Sbjct: 450 --GNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIE 493
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 170/461 (36%), Positives = 254/461 (55%), Gaps = 26/461 (5%)
Query: 15 LKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+K T +K I A ++ N + L ++LI+ + H +F+ PN
Sbjct: 14 IKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSG--HVAYAHRIFSCTHHPN 71
Query: 74 LFLFNTLIRCTPPQDS-VLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
LF++NT+IR DS + A + L ++ + +T+ F L +C C L L G++
Sbjct: 72 LFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKAC---CKLLRLCEGQE 128
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H + K G F + LI YA+ + +FD+MP SA+W+ M++GY +
Sbjct: 129 LHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQ 188
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
A AL LFR+M + V T+ V+ V LG L+ G VH YM+K
Sbjct: 189 -----AVEALKLFREMQAE--NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGV-- 239
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ DV +GTALV MYSKCG LDNAL +F M E++V W+ M G AIHG G +A++L D+
Sbjct: 240 KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDA 299
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M+ PN VTFTS+ +AC H+GLVE+G +F+ M +++ + P IKHY C+VDL RAG
Sbjct: 300 MKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAG 359
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
+ A+ FI +PI+P+ +LWR+LL AC HG LGE + + +L+L P +
Sbjct: 360 MVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPS--------SP 411
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
E++V +SN+YAS RW V VR MK K + + G S ++
Sbjct: 412 ENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIE 452
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/454 (36%), Positives = 264/454 (58%), Gaps = 28/454 (6%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S +QIHA ++ S LI +Y A+ ++ VF N+ +N++
Sbjct: 141 SEGEQIHALIMKCGFGSHGFVKNTLIHMY----ANCGEVEVARRVFDEMSERNVRTWNSM 196
Query: 81 IRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ V+ + + + + FD+ T V L +C R L+ L LG I+ +V +
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGR---LADLELGEWINRYVEE 253
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
+G N + T+L+ YA + + +++FDQM R W+AMI+GY SQ+ + ++
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY-SQASRCRE--- 309
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LF +M + + P + TMV +LS + LG LE G VH +++K + V +G
Sbjct: 310 -ALDLFHEM--QKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRM--KLTVTLG 364
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
TAL+D Y+KCG +++++ +F +M KNVL+WT + G+A +G+G +A+ M + V+
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVE 424
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN VTF + +AC HAGLV+EG LF +M +G+EP I+HY C+VD+LGRAG +EEA+
Sbjct: 425 PNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQ 484
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
FI +PI+P+A++WR+LL++C VH +V +GE+ K L+ L+P S D++ LS
Sbjct: 485 FIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEP--------THSGDYILLS 536
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYAS RW D VR +MK K ++ PG S+++
Sbjct: 537 NIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIE 570
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/433 (28%), Positives = 210/433 (48%), Gaps = 29/433 (6%)
Query: 13 LKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L L+ T + +IHA LI L P A+ + L P S +F D P
Sbjct: 29 LILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENL-LESAAILLPTSMDYAVSIFRQIDEP 87
Query: 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ +N +IR P +++L+F + + + D+FT+ L C+R +LS G
Sbjct: 88 DSPAYNIMIRGFTLKQSPHEAILLFKE-MHENSVQPDEFTFPCILKVCSRLQALSE---G 143
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
QIH + K GF + V TLIH YA+ ++ ++VFD+M R+ TWN+M GY
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ + LF +ML ++ + T+V VL+ +L LE G ++ Y+E+
Sbjct: 204 GNWEE-----VVKLFHEML--ELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEK-G 255
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ N I T+LVDMY+KCG +D A +F +M ++V+ W+AM +G + + EA+ L
Sbjct: 256 LKGNPTLI-TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLF 314
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLL 366
M+ + PN +T S+ ++C G +E G +H F K ++ + + ++D
Sbjct: 315 HEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKR---MKLTVTLGTALMDFY 371
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTF 423
+ G +E + +P+K + + W L+ A N G AL + ++P +VTF
Sbjct: 372 AKCGSVESSIEVFGKMPVK-NVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTF 430
Query: 424 VDV--ACTSEDFV 434
+ V AC+ V
Sbjct: 431 IGVLSACSHAGLV 443
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/371 (40%), Positives = 221/371 (59%), Gaps = 21/371 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDI 160
L D T V L SCAR L L LGR++H ++ + + +V V L+ Y D
Sbjct: 222 LQADGMTLVIVLSSCAR---LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDA 278
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ +KVF +MP+++ +WN+MI+G +Q + K+ +L +FR M GVKP D T+
Sbjct: 279 NFARKVFQEMPVKNVVSWNSMISGL-AQKGQFKE----SLYMFRKM--QRLGVKPDDVTL 331
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V VL+ + LG+LE G VH Y+++ D FIG ALVDMY+KCG +D A +F M
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRN--QIRADGFIGNALVDMYAKCGSIDQACWVFQAM 389
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
K+V ++TAM G+A+HG+G +A+ L M G++P+ VTF + AC H GLVEEG
Sbjct: 390 NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 449
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
F++M + + + P ++HY C+VDLLGRAG + EA FI +PI+PDA + +LL AC +
Sbjct: 450 KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKI 509
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HG V LGE V K + +++P +V +SNIY+SA RW D +RK MK +
Sbjct: 510 HGKVELGESVMKKIEKIEPR--------KDGAYVLMSNIYSSANRWRDALKLRKTMKERN 561
Query: 461 VETEPGSSILQ 471
+E PG S ++
Sbjct: 562 LEKTPGCSSIE 572
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 136/474 (28%), Positives = 231/474 (48%), Gaps = 51/474 (10%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQL-----IQLYCTKKASPQSTKI 61
H+ L L+ + +KQIHA +I + SP AQL + C + + P +
Sbjct: 21 HKLSFLSTLQTCKSIKGLKQIHASII-KTMPSPD--AQLTISTRLSALCAQ-SLPIDPRY 76
Query: 62 VHFVFTHFDPPNLFLFNTLIR--CTPPQDSV---LVFAYWVSKGLLTFDDFTYVFALGSC 116
+ PNL L+N +IR T DS+ +V+ +SKG++ D++T F L +C
Sbjct: 77 ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVP-DNYTIPFVLKAC 135
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A ++ G ++H K G +V V+ TL+ YA I S +KVFD P R
Sbjct: 136 AESRAVRE---GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLV 192
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+W MI GY A + LF +M + ++ T+V VLS ++LG L G
Sbjct: 193 SWTTMIQGYVKMG-----FAREGVGLFFEMCGE--NLQADGMTLVIVLSSCARLGDLRLG 245
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H Y+ + + DVF+G ALVDMY KCG + A +F M KNV++W +M +G+A
Sbjct: 246 RKLHRYIIRNSNV-NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLA 304
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEP 354
G+ E++ + M+ GVKP+ VT ++ +C + G++E G +H + + +++ +
Sbjct: 305 QKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLD-RNQIRADG 363
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
I + +VD+ + G +++A ++ + D + +++ +HG + GK L
Sbjct: 364 FIGN--ALVDMYAKCGSIDQAC-WVFQAMNRKDVYSYTAMIVGLAMHG------QGGKAL 414
Query: 415 --------LQLQP-EVTFVDV--ACTSEDFVALSNIYASAERWPDVESVRKQMK 457
+ ++P EVTFV V AC+ V Y E + ++R Q++
Sbjct: 415 DLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKY--FEDMSTIYNLRPQLE 466
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 263/469 (56%), Gaps = 36/469 (7%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNA---LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
L K ++ P H KQ+HA L T L P ++L++LY S + F+
Sbjct: 9 LSKCTTLSLP-HTKQLHAHLFTTGQFRLPISPARSKLLELYAL---SLGNLSFAILTFSQ 64
Query: 69 FDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR-FCSLS 123
P+ +N +IR P ++ + +SK D T F L +CAR L
Sbjct: 65 IRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSR-KVDALTCSFVLKACARVLARLE 123
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
++ QIH H+ ++GF+ + L+ TTL+ YA +I S +KVFD+M R A+WNA+I+
Sbjct: 124 SI----QIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALIS 179
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
G+ SK + AL LF+ M +D G KP + +++ LS +QLG + G +HGY+
Sbjct: 180 GFAQGSKPTE-----ALSLFKRMEID--GFKPNEISVLGALSACAQLGDFKEGEKIHGYI 232
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGN 302
+ + + + + ++DMY+KCG +D A L+F M K+++TW M A+HG+G
Sbjct: 233 KVERF--DMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGC 290
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+A+ L + M GV P+ V++ ++ AC H GLVEEG LF++M++ GV+P++KHY +
Sbjct: 291 KALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSV 349
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGRAG L EAY+ + +P PD +LW++LL A H +V + E V + L+++
Sbjct: 350 VDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSN-- 407
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
C DFV LSN+YA+ ERW DV VR+ MK + V+ PG S ++
Sbjct: 408 ----HCG--DFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIE 450
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 182/533 (34%), Positives = 266/533 (49%), Gaps = 86/533 (16%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQL-----IQLYCTKKASPQSTKI 61
H+ L L+ + +KQIHA +I + SP AQL + C + + P +
Sbjct: 36 HKLSFLSTLQTCKSIKGLKQIHASII-KTMPSPD--AQLTISTRLSALCAQ-SLPIDPRY 91
Query: 62 VHFVFTHFDPPNLFLFNTLIR--CTPPQDSV---LVFAYWVSKGLLTFDDFTYVFALGSC 116
+ PNL L+N +IR T DS+ +V+ +SKG++ D++T F L +C
Sbjct: 92 ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVP-DNYTIPFVLKAC 150
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A ++ G ++H K G +V V+ TL+ YA I S +KVFD P R
Sbjct: 151 AESRAVRE---GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLV 207
Query: 177 TWNAMINGYCSQSKKAKDCAF---------------NALV--------------LFRDML 207
+W MI GY + NALV +F++M
Sbjct: 208 SWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMP 267
Query: 208 VD--------VSG---------------------VKPTDTTMVCVLSVSSQLGLLEFGAC 238
V +SG VKP D T+V VL+ + LG+LE G
Sbjct: 268 VKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKW 327
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VH Y+++ D FIG ALVDMY+KCG +D A +F M K+V ++TAM G+A+H
Sbjct: 328 VHAYLDRN--QIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMH 385
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+G +A+ L M G++P+ VTF + AC H GLVEEG F++M + + + P ++H
Sbjct: 386 GQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEH 445
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C+VDLLGRAG + EA FI +PI+PDA + +LL AC +HG V LGE V K + +++
Sbjct: 446 YGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIE 505
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P +V +SNIY+SA RW D +RK MK + +E PG S ++
Sbjct: 506 PR--------KDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIE 550
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 249/450 (55%), Gaps = 28/450 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
KQIH I + ++S L L+ +Y A + H +F ++ +N +I
Sbjct: 241 KQIHCYAIRSGIESDVLVVNGLVNMY----AKCGNVNTAHKLFERMPIRDVASWNAIIGG 296
Query: 82 -RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
L F + + + T V L +CA +L G+QIH + + GF
Sbjct: 297 YSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ---GQQIHGYAIRSGF 353
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
N +V L++ YA +++S K+F++MP ++ WNA+I+GY + AL
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHE-----AL 408
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LF +M G+KP +V VL + LE G +HGY ++ + E++V +GT L
Sbjct: 409 ALFIEM--QAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF--ESNVVVGTGL 464
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VD+Y+KCG ++ A +F RM E++V++WT M IHG G +A+ L M++ G K +
Sbjct: 465 VDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDH 524
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+ FT++ AC HAGLV++GL F MKS +G+ P ++HY+C+VDLLGRAGHL+EA I
Sbjct: 525 IAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIK 584
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ ++PDA +W +LL AC +H ++ LGE+ K L +L P+ + +V LSNIY
Sbjct: 585 NMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPD--------NAGYYVLLSNIY 636
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSIL 470
A A+RW DV +RK MK K V+ +PG S++
Sbjct: 637 AEAQRWEDVAKLRKMMKEKGVKKQPGCSVV 666
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 206/405 (50%), Gaps = 25/405 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI--- 81
+++H +I +S + + TK S ++ + V F ++ +N +I
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQV---FDRMPKRDVVSWNAIIAGY 196
Query: 82 -RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
+ P +++ +F+ G+ + T V + CA +L G+QIH + + G
Sbjct: 197 SQNGQPYEALALFSEMQVNGIKP-NSSTLVSVMPVCAHLLALEQ---GKQIHCYAIRSGI 252
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+VLV L++ YA ++++ K+F++MP+R A+WNA+I GY S+ + AL
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHE-----AL 307
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
F M V G+KP TMV VL + L LE G +HGY ++ + NDV +G AL
Sbjct: 308 AFFNRM--QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGF-ESNDV-VGNAL 363
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
V+MY+KCG +++A +F RM +KNV+ W A+ +G + HG +EA+ L M+ G+KP++
Sbjct: 364 VNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDS 423
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
S+ AC H +E+G + + G E ++ + +VD+ + G++ A
Sbjct: 424 FAIVSVLPACAHFLALEQGKQIH-GYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFE 482
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
+P + D + W +++ A +HG GE + ++Q T +D
Sbjct: 483 RMP-EQDVVSWTTMILAYGIHGH---GEDALALFSKMQETGTKLD 523
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 167/315 (53%), Gaps = 14/315 (4%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+ L Y + + + D ++ + +C S S L GR++H + RGF +V+V
Sbjct: 102 NKALRLYYQMQRTGINPDKLVFLSVIKACG---SQSDLQAGRKVHEDIIARGFESDVIVG 158
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T L Y + + ++VFD+MP R +WNA+I GY + + AL LF +M
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ-----PYEALALFSEM- 212
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
V+G+KP +T+V V+ V + L LE G +H Y ++ E+DV + LV+MY+KC
Sbjct: 213 -QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGI--ESDVLVVNGLVNMYAKC 269
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A +F RM ++V +W A+ G +++ + +EA+ + M+ G+KPN++T S+
Sbjct: 270 GNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVL 329
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H +E+G + + G E + + +V++ + G++ AY +P K +
Sbjct: 330 PACAHLFALEQGQQIH-GYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKN 387
Query: 388 AILWRSLLSACNVHG 402
+ W +++S + HG
Sbjct: 388 VVAWNAIISGYSQHG 402
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 20/236 (8%)
Query: 167 FDQMPMRSSAT-WNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVL 224
F Q +R++A W I GY K+ +N AL L+ M +G+ P + V+
Sbjct: 76 FTQTDIRNNAVVWKETIIGY------VKNGFWNKALRLYYQM--QRTGINPDKLVFLSVI 127
Query: 225 SVSSQLGLLEFGACVH-GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L+ G VH + + F E+DV +GTAL MY+KCG L+NA +F RM ++
Sbjct: 128 KACGSQSDLQAGRKVHEDIIARGF---ESDVIVGTALASMYTKCGSLENARQVFDRMPKR 184
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LH 341
+V++W A+ G + +G+ EA+ L M+ G+KPN+ T S+ C H +E+G +H
Sbjct: 185 DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIH 244
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + G+E + + +V++ + G++ A+ +PI+ D W +++
Sbjct: 245 CY---AIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGG 296
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 272/492 (55%), Gaps = 50/492 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQL-YCTKKAS-PQSTKIVHF---VFTH 68
L++ ++ S +K IH L+ L S A +L+ L C ++ + T ++ + +F+
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQ 78
Query: 69 FDPPNLFLFNTLIRC-TPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTL 125
PNLF+FN LIRC + + F ++ K + D+ T+ F + + + +
Sbjct: 79 IQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKAST---EMECV 135
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+G Q H + + GF +V V +L+H YA+ I++ ++F QMP R +W +M+ GY
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGY 195
Query: 186 CS--------------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
C +C A+ LF L+ GV +T
Sbjct: 196 CKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE--LMKREGVVANETV 253
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV V+S + LG LEFG H Y+ K+ +M N + +GTALVDMY +CG ++ A+ +F
Sbjct: 254 MVSVISSCAHLGALEFGERAHEYVVKS-HMTVN-LILGTALVDMYWRCGEIEKAIRVFEE 311
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ +K+ L+W+++ G+A+HG ++AI M G P +T T++ +AC H GLV++G
Sbjct: 312 LPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKG 371
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
L +++NMK +G+EP ++HY CIVD+LGRAG L EA NFI+ +P+KP+A + +LL AC
Sbjct: 372 LEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACK 431
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
++ + + E+VG +L++++PE S +V LSNIYA A +W +ES+R MK K
Sbjct: 432 IYKNTEVAERVGNMLIEVKPE--------HSGYYVLLSNIYACAGQWEKLESLRDIMKEK 483
Query: 460 RVETEPGSSILQ 471
V+ PG S+++
Sbjct: 484 LVKKPPGWSLIE 495
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 263/455 (57%), Gaps = 31/455 (6%)
Query: 23 HIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+++Q+HA +I + L +S L +LI L CT + + ++ F P+ FLF++L+
Sbjct: 42 NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRL----FPTVPNPDSFLFDSLL 97
Query: 82 RCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ T D+VL + + G ++T+ + +CA LS L LG++IH HV
Sbjct: 98 KVTSKFGFSIDTVLFYRRMLFSGAPQ-SNYTFTSVIKACA---DLSALRLGKEIHSHVMV 153
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G+ ++ V LI YA D+ KKVFD MP R+ WN++I+GY Q+ ++
Sbjct: 154 CGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY-DQNGLPQE--- 209
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
++ LF M+ SG +P T+V +LS SQLG L+FG +H Y + + + +V +G
Sbjct: 210 -SIGLFHLMME--SGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGF--DLNVVLG 264
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T+L++MY++CG + A +F M+E+NV+TWTAM +G +HG G +A+ L MR G +
Sbjct: 265 TSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 324
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN +TF ++ +AC H+GL+++G +F +MK +G+ P ++H C+VD+ GRAG L +AY
Sbjct: 325 PNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQ 384
Query: 378 FIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
FI IP +P +W S+L AC +H + LG KV + +L ++PE +V L
Sbjct: 385 FIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPE--------NPGHYVML 436
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SNIYA A R VE VR M +R++ + G S ++
Sbjct: 437 SNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIE 471
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/455 (36%), Positives = 263/455 (57%), Gaps = 31/455 (6%)
Query: 23 HIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+++Q+HA +I + L +S L +LI L CT + + ++ F P+ FLF++L+
Sbjct: 106 NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRL----FPTVPNPDSFLFDSLL 161
Query: 82 RCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ T D+VL + + G ++T+ + +CA LS L LG++IH HV
Sbjct: 162 KVTSKFGFSIDTVLFYRRMLFSGAPQ-SNYTFTSVIKACA---DLSALRLGKEIHSHVMV 217
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G+ ++ V LI YA D+ KKVFD MP R+ WN++I+GY Q+ ++
Sbjct: 218 CGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGY-DQNGLPQE--- 273
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
++ LF M+ SG +P T+V +LS SQLG L+FG +H Y + + + +V +G
Sbjct: 274 -SIGLFHLMME--SGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGF--DLNVVLG 328
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T+L++MY++CG + A +F M+E+NV+TWTAM +G +HG G +A+ L MR G +
Sbjct: 329 TSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPR 388
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN +TF ++ +AC H+GL+++G +F +MK +G+ P ++H C+VD+ GRAG L +AY
Sbjct: 389 PNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQ 448
Query: 378 FIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
FI IP +P +W S+L AC +H + LG KV + +L ++PE +V L
Sbjct: 449 FIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPE--------NPGHYVML 500
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SNIYA A R VE VR M +R++ + G S ++
Sbjct: 501 SNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIE 535
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 173/507 (34%), Positives = 254/507 (50%), Gaps = 78/507 (15%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
TP +KQ+HA I PL A + +C S + VF PN F +NT
Sbjct: 31 TPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCA--FSSRDIDYARAVFRQMPEPNCFCWNT 88
Query: 80 LIRCTPP-------QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
++R +++++F+ + G + + FT+ L +CAR S L G+QIH
Sbjct: 89 ILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACAR---ASRLREGKQIH 145
Query: 133 VHVTKRGFMFNVLVATTLIHFYA------------------------------------- 155
+ K GF + V + L+ Y
Sbjct: 146 GLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVV 205
Query: 156 ----------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFR 204
DI S K +FD+MP RS +WN MI+GY A++ F A+ LF+
Sbjct: 206 LWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGY------AQNGHFIEAINLFQ 259
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
+M S + P T+V VL +++G LE G +H Y K E D +G+ALVDMY
Sbjct: 260 EM--QSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI--EIDDVLGSALVDMY 315
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
SKCG +D AL +F + ++N +TW+A+ A+HG+ +AI M GV PN V +
Sbjct: 316 SKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYI 375
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ +AC HAGLVEEG F +M G++P I+HY C+VDLLGRAGHLEEA I +PI
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+PD ++W++LL AC +H ++ +GE+V + L++L P S +VALSN+YAS
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH--------DSGSYVALSNLYASLG 487
Query: 445 RWPDVESVRKQMKVKRVETEPGSSILQ 471
W V VR +MK + +PG S ++
Sbjct: 488 NWEAVARVRLKMKGMDIRKDPGCSWIE 514
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 269/504 (53%), Gaps = 52/504 (10%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTK 60
SLP H F L LK + + IKQIHAQ++T+ L ++ L LI Y + +
Sbjct: 50 FSLPSHSTFVQL-LKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCR----NLS 104
Query: 61 IVHFVFTHFD--PPNLFLFNTLIRC---TP-PQDSVLVFAYWVSKGLLT-FDDFTYVFAL 113
VF F PP + ++N +I+ TP Q+S+ +F ++ G T D +T+ F
Sbjct: 105 FARIVFDQFPSLPPTI-IWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVF 163
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+C+R +L G +H V K G+ ++ V +L++ Y+ + K+VFD+MP R
Sbjct: 164 TACSRHPTLRG--YGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQR 221
Query: 174 SSATWNAMINGYCSQSKKAK------------DCAF--------------NALVLFRDML 207
TW +++ GY + + + D ++ AL F DML
Sbjct: 222 DVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDML 281
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
VKP + +V +LS + LG L+ G +H Y++K + ++ I TAL+DMY+KC
Sbjct: 282 CH-DEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSN--ISTALIDMYAKC 338
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G +D A +F + ++++LTWT+M +G+++HG G E + M G KP+ +T +
Sbjct: 339 GRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVL 398
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
C H+GLVEEGL +F +M WG+ P ++HY C++DLLGRAG LE A+ I +P++PD
Sbjct: 399 NGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPD 458
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+ WR+LLSAC +HGDV LGE++ + +L P +V LSN+YAS +W
Sbjct: 459 VVAWRALLSACRIHGDVDLGERIINHIAELCP-------GSHGGGYVLLSNLYASMGQWE 511
Query: 448 DVESVRKQMKVKRVETEPGSSILQ 471
V VRK M + E PG S ++
Sbjct: 512 SVTKVRKAMSQRGSEGCPGCSWIE 535
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 155/335 (46%), Gaps = 51/335 (15%)
Query: 108 TYVFALGSCARFCSL----STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
T F+L S + F L +L +QIH V G N + LIH Y +++S
Sbjct: 47 TSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFA 106
Query: 164 KKVFDQMP-MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+ VFDQ P + + WN MI Y S++ +++ +L LF ML T
Sbjct: 107 RIVFDQFPSLPPTIIWNLMIQAY-SKTPSSQE----SLYLFHQMLAHGRPTSADKYTFTF 161
Query: 223 VLSVSSQLGLLE-FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V + S+ L +G VHG + K Y E+D+F+G +LV+MYS + +A +F M
Sbjct: 162 VFTACSRHPTLRGYGENVHGMVVKDGY--ESDIFVGNSLVNMYSIFSRMVDAKRVFDEMP 219
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSM---RDCG----------------------- 315
+++V+TWT++ G A+ G+ A L D M D
Sbjct: 220 QRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFND 279
Query: 316 ------VKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
VKPN S+ +AC H G +++G +H++ + K++ + +I + ++D+
Sbjct: 280 MLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYID-KNRILLSSNIS--TALIDMYA 336
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G ++ A G+ K D + W S++S ++HG
Sbjct: 337 KCGRIDCARRVFDGLH-KRDLLTWTSMISGLSMHG 370
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 262/476 (55%), Gaps = 30/476 (6%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQST 59
LS +C +L++L ++ S +KQIHA I + + ++P LI ++P S
Sbjct: 30 LSFILRKCISLVQLCG-SSQSKLKQIHAFSIRHGVPPQNPDFNKHLI-FALVSLSAPMS- 86
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+F PN+F +NT+IR P +V +F+ + + D T+ F +
Sbjct: 87 -FAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKA 145
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
A+ +S LG IH V + GF V +L+H Y+ + S +VF+ M R
Sbjct: 146 VAKLMDVS---LGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDR 202
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WN++ING+ + AL L+R+M GV+P TMV +LS +LG L
Sbjct: 203 VAWNSVINGFALNGMPNE-----ALTLYREM--GSEGVEPDGFTMVSLLSACVELGALAL 255
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH YM K + AL+D+YSKCG +A +F M E++V++WT++ G+
Sbjct: 256 GERVHMYMVKVGLVQNQHA--SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGL 313
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A++G GNEA++L + G+KP+ +TF + AC H G+++EG + F MK ++G+ P
Sbjct: 314 AVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR 373
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+H+ C+VDLL RAG + +AY++I +P+ P+A++WR+LL AC +HG + LGE +
Sbjct: 374 IEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQ 433
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L+ S DFV LSN+YAS RW DV++VRK M +K V+ PG S+++
Sbjct: 434 RLEQR--------HSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVE 481
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 174/483 (36%), Positives = 262/483 (54%), Gaps = 48/483 (9%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH- 63
P C ALL+ A + QIH ++ L + PL TK AS S ++H
Sbjct: 28 PEQNCLALLQ--ACNALPKLTQIHTHILKLGLHNNPLV-------LTKFASISS--LIHA 76
Query: 64 ------FVFTHFDPPNL---FLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYV 110
F+F+ L FLFNTLIR +D L + + + FTY
Sbjct: 77 TDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYP 136
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-NKDISSGKKVFDQ 169
F L +CA L L LG+ +H V K GF ++ V T++H Y+ I+S +KVFD+
Sbjct: 137 FVLKACA---GLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDE 193
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP S TW+AMI GY + + A+ LFR+M ++ V P + TMV +LS +
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTE-----AVALFREM--QMAEVCPDEITMVSMLSACTD 246
Query: 230 LGLLEFGACVHGYMEK-TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
LG LE G + Y+E+ + P V + AL+DM++KCG + AL +F M EK +++W
Sbjct: 247 LGALELGKWIEAYIERHEIHKP---VEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSW 303
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T++ GMA+HG+G EA L + M GV P+ V F L +AC H+GLVE G F +M
Sbjct: 304 TSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMK 363
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+ + P I+HY C+VD+ R G ++EA F+ +PI+P+ ++ R+L+SAC HG+ LGE
Sbjct: 364 KYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGE 423
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
K+ K+L++ +P ++V LSNIYA W +R+ M+VK ++ PGS+
Sbjct: 424 KITKLLMKHEP--------LHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGST 475
Query: 469 ILQ 471
+++
Sbjct: 476 MIE 478
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 173/507 (34%), Positives = 254/507 (50%), Gaps = 78/507 (15%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
TP +KQ+HA I PL A + +C S + VF PN F +NT
Sbjct: 31 TPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCA--FSSRDIDYARAVFRQMPEPNCFCWNT 88
Query: 80 LIRCTPP-------QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
++R +++++F+ + G + + FT+ L +CAR S L G+QIH
Sbjct: 89 ILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACAR---ASRLREGKQIH 145
Query: 133 VHVTKRGFMFNVLVATTLIHFY-------------------------------------- 154
+ K GF + V + L+ Y
Sbjct: 146 GLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVV 205
Query: 155 ---------ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFR 204
DI S K +FD+MP RS +WN MI+GY A++ F A+ LF+
Sbjct: 206 LWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGY------AQNGHFIEAINLFQ 259
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
+M S + P T+V VL +++G LE G +H Y K E D +G+ALVDMY
Sbjct: 260 EM--QSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV--EIDDVLGSALVDMY 315
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
SKCG +D AL +F + ++N +TW+A+ A+HG+ +AI M GV PN V +
Sbjct: 316 SKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYI 375
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ +AC HAGLVEEG F +M G++P I+HY C+VDLLGRAGHLEEA I +PI
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+PD ++W++LL AC +H ++ +GE+V + L++L P S +VALSN+YAS
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPH--------DSGSYVALSNLYASLG 487
Query: 445 RWPDVESVRKQMKVKRVETEPGSSILQ 471
W V VR +MK + +PG S ++
Sbjct: 488 NWEAVARVRLKMKGMDIRKDPGCSWIE 514
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 176/488 (36%), Positives = 254/488 (52%), Gaps = 62/488 (12%)
Query: 24 IKQIHAQLITNAL---KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+KQIH + +T L K L +L+ Y T+ SP + V F H P++ + L
Sbjct: 270 LKQIHGKAVTLGLLCSKRQHLACKLLNTY-TQLGSPVDAQKV---FNHIQNPDIVSWTCL 325
Query: 81 I----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I + P + +F++ GL D F V A+ +C LS GR +H V
Sbjct: 326 ISLYLHTSQPCKAFSIFSHLFHSGLRP-DSFCVVGAVSACGHRKDLSN---GRIVHGMVF 381
Query: 137 KRGFMFNVLVATTLIHFYASN-------------------------------KDISSGKK 165
+ + +V LI Y+ + DI + ++
Sbjct: 382 RFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARR 441
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+MPMR+S +W AMI GY + L LF++M + PT T+V VLS
Sbjct: 442 IFDEMPMRNSVSWTAMITGYVQ-----GEVPIPGLELFQEMRAEGKDW-PTVITIVAVLS 495
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ +G + G+ VHGY+ KT + DV + AL+DMY+K G L AL IF M +++V
Sbjct: 496 GCADIGAFDLGSSVHGYVNKTNL--DLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDV 553
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+WT M +G+A+HGKG A+ M G PN VT S+ +AC HAGLV EG LF
Sbjct: 554 FSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQK 613
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M G++P I+HY C+VDLLGRAG L EA I +PIKPD+++WRSLLSAC VHG++A
Sbjct: 614 MVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLA 673
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
L E GK++++L+P+ V ++ L NIY SA RW D RK M+ +RV+ +P
Sbjct: 674 LAEMAGKMIIELEPDDDGV--------YILLWNIYCSASRWEDALKARKAMRDRRVKKKP 725
Query: 466 GSSILQTT 473
G S ++
Sbjct: 726 GCSWVEVN 733
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 132/332 (39%), Gaps = 57/332 (17%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL--VATTLIHFYASNKDISSGKK 165
T+ F L C SL L +QIH G + + +A L++ Y +K
Sbjct: 256 TFYFLLQKCG---SLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 309
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
VF+ + +W +I+ Y S+ K A +F + SG++P +V +S
Sbjct: 310 VFNHIQNPDIVSWTCLISLYLHTSQPCK-----AFSIFSHLFH--SGLRPDSFCVVGAVS 362
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
L G VHG + + + +D +G AL+DMYS+ G ++ A +F M K+V
Sbjct: 363 ACGHRKDLSNGRIVHGMVFR--FELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDV 420
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+WT++ G A R+ D M N+V++T++ + GL LF
Sbjct: 421 SSWTSLLNGFIKCNDIEAARRIFDEMP----MRNSVSWTAMITGYVQGEVPIPGLELFQE 476
Query: 346 MKS-----------------------------------KWGVEPHIKHYSCIVDLLGRAG 370
M++ K ++ + + ++D+ ++G
Sbjct: 477 MRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSG 536
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
L A +P K D W +++S +HG
Sbjct: 537 ALVLALKIFQEMP-KRDVFSWTTMISGLALHG 567
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 177/488 (36%), Positives = 255/488 (52%), Gaps = 62/488 (12%)
Query: 24 IKQIHAQLITNAL---KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+KQIH + +T L K L +L+ Y T+ SP + V F H P++ + L
Sbjct: 19 LKQIHGKAVTLGLLCSKRQHLACKLLNTY-TQLGSPVDAQKV---FNHIQNPDIVSWTCL 74
Query: 81 I----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I + P + +F++ GL D F V A+ +C LS GR +H V
Sbjct: 75 ISLYLHTSQPCKAFSIFSHLFHSGLRP-DSFCVVGAVSACGHRKDLSN---GRIVHGMVF 130
Query: 137 KRGFMFNVLVATTLIHFYASN-------------------------------KDISSGKK 165
+ + +V LI Y+ + DI + ++
Sbjct: 131 RFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARR 190
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+MPMR+S +W AMI GY + L LF++M + PT T+V VLS
Sbjct: 191 IFDEMPMRNSVSWTAMITGYVQ-----GEVPIPGLELFQEMRAEGKDW-PTVITIVAVLS 244
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ +G + G+ VHGY+ KT + DV + AL+DMY+K G L AL IF M +++V
Sbjct: 245 GCADIGAFDLGSSVHGYVNKTNL--DLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDV 302
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+WT M +G+A+HGKG A+ M GV PN VT S+ +AC HAGLV EG LF
Sbjct: 303 FSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQK 362
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M G++P I+HY C+VDLLGRAG L EA I +PIKPD+++WRSLLSAC VHG++A
Sbjct: 363 MVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLA 422
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
L E GK++++L+P+ V ++ L NIY SA RW D RK M+ +RV+ +P
Sbjct: 423 LAEMAGKMIIELEPDDDGV--------YILLWNIYCSASRWEDALKARKAMRDRRVKKKP 474
Query: 466 GSSILQTT 473
G S ++
Sbjct: 475 GCSWVEVN 482
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 21/244 (8%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL--VATTLIHFYASNKDISSGKK 165
T+ F L C SL L +QIH G + + +A L++ Y +K
Sbjct: 5 TFYFLLQKCG---SLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 58
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
VF+ + +W +I+ Y S+ K A +F + SG++P +V +S
Sbjct: 59 VFNHIQNPDIVSWTCLISLYLHTSQPCK-----AFSIFSHLFH--SGLRPDSFCVVGAVS 111
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
L G VHG + + + +D +G AL+DMYS+ G ++ A +F M K+V
Sbjct: 112 ACGHRKDLSNGRIVHGMVFR--FELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDV 169
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+WT++ G A R+ D M N+V++T++ + GL LF
Sbjct: 170 SSWTSLLNGFIKCNDIEAARRIFDEMP----MRNSVSWTAMITGYVQGEVPIPGLELFQE 225
Query: 346 MKSK 349
M+++
Sbjct: 226 MRAE 229
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 258/490 (52%), Gaps = 48/490 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + + + K+I+A +I + L + +C K + +F PN+
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDK---IEDMDYATRLFNQVSNPNV 73
Query: 75 FLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+N++IR D + ++ + K D FT+ F SCA SL + +LG+Q
Sbjct: 74 FLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA---SLGSCYLGKQ 130
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQ 188
+H H+ K G F+V+ LI Y D+ KVFD+M R +WN++++GY Q
Sbjct: 131 VHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 189 SKKAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KKAK C A+ FR+M ++G++P + +++ VL
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIEPDEISLISVL 248
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+QLG LE G +H Y E+ ++ + V AL++MYSKCG + A+ +F +M K+
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVC--NALIEMYSKCGVISQAIQLFGQMEGKD 306
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W+ M +G A HG + AI + M+ VKPN +TF L +AC H G+ +EGL FD
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD 366
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ + +EP I+HY C++D+L RAG LE A +P+KPD+ +W SLLS+C G++
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNL 426
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ L++L+PE D+ ++V L+NIYA +W DV +RK ++ + ++
Sbjct: 427 DVALVAMDHLVELEPE----DMG----NYVLLANIYADLGKWEDVSRLRKMIRNENMKKT 478
Query: 465 PGSSILQTTT 474
PG S+++
Sbjct: 479 PGGSLIEVNN 488
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 257/501 (51%), Gaps = 63/501 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ +P ++Q+HAQ+I L + L C S + + F P
Sbjct: 35 LRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQI-FECVEKQKPET 93
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++N+ ++ P D++++F Y + + + D FT L +C LS GR
Sbjct: 94 FVWNSCLKALAEGDSPIDAIMLF-YRLRQYDVCPDTFTCSSVLRACLNLLDLSN---GRI 149
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN----------- 179
+H V K GF N+ + ++H YAS ++ + +F++MP R TWN
Sbjct: 150 LHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGD 209
Query: 180 --------------------AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+MI GY Q KAK+ A+ LF M + +GVK + T
Sbjct: 210 HEGAYDLFSRMPERNVRSWTSMIAGYV-QCGKAKE----AIHLFAKM--EEAGVKCNEVT 262
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+V VL+ + LG L+ G +H Y + + + +V I L+DMY KCGCL+ A +F
Sbjct: 263 VVAVLAACADLGALDLGMRIHEYSNRHGF--KRNVRISNTLIDMYVKCGCLEEACKVFEE 320
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E+ V++W+AM G+A+HG+ EA+RL M G++PN VTF L AC H GL+ EG
Sbjct: 321 MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEG 380
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F +M +G+ P I+HY C+VDLL RAG L EA+ FI+ +P+KP+ ++W +LL AC
Sbjct: 381 RRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACR 440
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
VH +V + E+ K LL+L P +V LSNIYA A RW D VRK MK +
Sbjct: 441 VHKNVEMAEEAIKHLLELDP--------LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDR 492
Query: 460 RVETEPGSSILQTTTHYTLDG 480
+V+ PG S + T+DG
Sbjct: 493 QVKKTPGWSSI------TVDG 507
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 174/504 (34%), Positives = 263/504 (52%), Gaps = 68/504 (13%)
Query: 15 LKAITTPSHIKQIHAQLI-TNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L T+P +KQ+HA L+ TN+ L S PL + C +S K++ F D
Sbjct: 22 LHNFTSPFELKQLHAHLLKTNSPLSSLPL--SRVASVCAFNSSFSYAKLI---FQLLDAS 76
Query: 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ +NT +R P D++ +F Y + + ++ D +T F L +C+R + G
Sbjct: 77 EVTHWNTCLRSFAEGDSPADAISLF-YRLREFDISPDHYTCSFVLKACSRLLDVRN---G 132
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN--------- 179
+ +H +V K G N+ + ++H YA +I +KVFD+MP R TWN
Sbjct: 133 KIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKM 192
Query: 180 ----------------------AMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+MI GY C +SK+A D LF +M + +G+ P
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAID-------LFLEM--EDAGLLP 243
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
+ T+V VL + +G L G +H + ++ Y E ++ + L+DMY KCGCL++A
Sbjct: 244 NEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY--EKNIRVCNTLIDMYVKCGCLEDACR 301
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
IF M E+ V++W+AM G+A HG+ +A+ L + M + GVKPNAVTF + AC H G+
Sbjct: 302 IFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGM 361
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
VE+G F +M +G+ P I+HY C+VDL RAG L+EA+ FIM +PI P+ ++W +LL
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
C VH ++ L E+ + L +L P +V LSNIYA A RW DV VRK
Sbjct: 422 GGCKVHKNIKLAEEATRHLSKLDP--------LNDGYYVVLSNIYAEAGRWEDVARVRKL 473
Query: 456 MKVKRVETEPG-SSILQTTTHYTL 478
M+ + V+ PG SSI+ Y
Sbjct: 474 MRDRGVKKTPGWSSIMVEGVVYNF 497
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 262/501 (52%), Gaps = 63/501 (12%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ L+A + + ++HA + +L +S L Q++ L +T+ VF+
Sbjct: 17 MASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATR----VFSQVR 72
Query: 71 PPNLFLFNTLIRCTPPQ----DSVLVFAY--------WVSKGLLTFDDFTYVFALGSCAR 118
PNL L N +I+ D++ V+ W+S D FTY F L +C
Sbjct: 73 EPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWIS--CTGGDRFTYPFLLKACG- 129
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
L L LG+Q+H HV + G N +V +LI Y D+ +KVFD M R +W
Sbjct: 130 --GLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSW 187
Query: 179 NAMINGYC--SQSKKAKDCAFN-------------------------ALVLFRDMLVDVS 211
N +I+ + Q +KA+ FN A+ FR L+ +
Sbjct: 188 NTVISAHARLGQMRKAR-AVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFR--LMQME 244
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
G +P D ++V VL +QLG LE G ++ Y + + E ++ ALV+MY+KCGC+D
Sbjct: 245 GFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRET--YVCNALVEMYAKCGCID 302
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAAC 330
AL +F+ M EK+V++W+ M G+A HG+ EA++L M G VKPN +TF L +AC
Sbjct: 303 QALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSAC 362
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
HAGL++EGL FD M +G+EP ++HY CIVDLL R+G ++ + I +P+ DA +
Sbjct: 363 SHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKI 422
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W S+L+AC HGDV + L+ L+PE DV + V L+N+YA+A RW +V
Sbjct: 423 WGSVLNACRSHGDVDTAVLAAERLVALEPE----DVG----NLVMLANVYAAARRWSEVA 474
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+ RK ++ + + PG S+++
Sbjct: 475 NTRKAIRSRSMRKTPGCSLIE 495
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 179/520 (34%), Positives = 271/520 (52%), Gaps = 84/520 (16%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPP 72
L A+T SH+ Q HA LI + L S P + +L SP ++ + H +F H P
Sbjct: 18 LTALTATSHLHQAHAHLIVSGLASHPF--TVTRLLACAALSPSASDLPHAKTIFLHTHNP 75
Query: 73 NLFLFNTLIRCTPPQ-DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+ F+FNT+I + DSV + + G D+FT+ F + S + + T LG Q+
Sbjct: 76 SPFMFNTIIMASSRTLDSVTFYVCMLHAGHFP-DNFTFPFLIKSSS---ASPTSLLGHQL 131
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ---------------------- 169
H HV K G +V V +I Y+S +++ S +KVFD+
Sbjct: 132 HAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQ 191
Query: 170 ----------MPMRSSATWNAMINGYCSQSK-----------KAKDCAF----------- 197
MP++++ +WNAMI+GY S+ +D A
Sbjct: 192 IDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQL 251
Query: 198 ----NALVLFRDMLVDVSGVK--PTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMP 250
AL LF +M V+G K P + +V +S +QL LE G +H Y+ EK +
Sbjct: 252 GMCNEALDLFMEM---VTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRI- 307
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+V +GT L+DMY KCG + +A +F+ M E+NV +W +M G+A++G G EA+ L
Sbjct: 308 --NVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWK 365
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M+ G PNA+TF +L C H+GL+ EG LF M +G++P +KHY C+VDLLGRAG
Sbjct: 366 MQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAG 425
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
++EA +F+ +P+KP + LW +L+ AC +HG V LGE++GK L+ L+P
Sbjct: 426 LVKEALDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLIDLEPH--------HG 477
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ L NI+A+A+RW DV VR K ++V PG++ L
Sbjct: 478 GRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPGNNGL 517
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 261/476 (54%), Gaps = 30/476 (6%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQST 59
LS +C +L++L ++ S +KQIHA I + + ++P LI ++P S
Sbjct: 30 LSFILRKCISLVQLCG-SSQSKLKQIHAFSIRHGVPPQNPDFNKHLI-FALVSLSAPMS- 86
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+F PN+F +NT+IR P +V +F+ + + D T+ F +
Sbjct: 87 -FAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKA 145
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
A+ +S LG IH V + GF V +L+H Y+ S +VF+ M R
Sbjct: 146 VAKLMDVS---LGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDR 202
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WN++ING+ + AL L+R+M GV+P TMV +LS +LG L
Sbjct: 203 VAWNSVINGFALNGMPNE-----ALTLYREM--GSEGVEPDGFTMVSLLSACVELGALAL 255
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH YM K + AL+D+YSKCG +A +F M E++V++WT++ G+
Sbjct: 256 GERVHMYMVKVGLVQNQHA--SNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGL 313
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A++G GNEA++L + G+KP+ +TF + AC H G+++EG + F MK ++G+ P
Sbjct: 314 AVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR 373
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+H+ C+VDLL RAG + +AY++I +P+ P+A++WR+LL AC +HG + LGE +
Sbjct: 374 IEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQ 433
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L+ S DFV LSN+YAS RW DV++VRK M +K V+ PG S+++
Sbjct: 434 RLEQR--------HSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVE 481
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 257/501 (51%), Gaps = 63/501 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ +P ++Q+HAQ+I L + L C S + + F P
Sbjct: 35 LRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQI-FKCVEKQKPET 93
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++N+ ++ P D++++F Y + + + D FT L +C LS GR
Sbjct: 94 FVWNSCLKALAEGDSPIDAIMLF-YRLRQYDVCPDTFTCSSVLRACLNLLDLSN---GRI 149
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN----------- 179
+H V K GF N+ + ++H YAS ++ + +F++MP R TWN
Sbjct: 150 LHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGD 209
Query: 180 --------------------AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+MI GY Q KAK+ A+ LF M + +GVK + T
Sbjct: 210 HEGAYDLFSRMPERNVRSWTSMIAGYV-QCGKAKE----AIHLFAKM--EEAGVKCNEVT 262
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+V VL+ + LG L+ G +H Y + + + +V I L+DMY KCGCL+ A +F
Sbjct: 263 VVAVLAACADLGALDLGMRIHEYSNRHGF--KRNVRISNTLIDMYVKCGCLEEACKVFEE 320
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E+ V++W+AM G+A+HG+ EA+RL M G++PN VTF L AC H GL+ EG
Sbjct: 321 MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEG 380
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F +M +G+ P I+HY C+VDLL RAG L EA+ FI+ +P+KP+ ++W +LL AC
Sbjct: 381 RRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACR 440
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
VH +V + E+ K LL+L P +V LSNIYA A RW D VRK MK +
Sbjct: 441 VHKNVEMAEEAIKHLLELDP--------LNDGYYVVLSNIYAEAGRWEDTARVRKFMKDR 492
Query: 460 RVETEPGSSILQTTTHYTLDG 480
+V+ PG S + T+DG
Sbjct: 493 QVKKTPGWSSI------TVDG 507
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 174/464 (37%), Positives = 252/464 (54%), Gaps = 33/464 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNA---LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
++ TT SHIKQ+ A L+T L+ P +L++ +C SP + H
Sbjct: 8 IQKCTTLSHIKQVQAHLLTTGQFNLRISPSRTRLLE-HCALSPSPAYLPYAAHIHRHIPH 66
Query: 72 PNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
P+ FN L+R P L F +L D T+ F+L + AR +LS
Sbjct: 67 PSTNDFNALLRGLARGPHPTHALTFL----STILHPDALTFSFSLIASARALALSET--- 119
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
QIH H+ +RG ++L+ TTLI YA D+ S ++VFD++P+R A WNA+I G
Sbjct: 120 SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQG 179
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
SK ++ AL LF M + G K + +++ L+ SQLG L G VH + K
Sbjct: 180 SKSSE-----ALALFNRMRAE--GEKINEISVLGALAACSQLGALRAGEGVHACVRKMDL 232
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIRL 307
+ +V + A++DMY+KCG D +FS M K+V+TW M A+HG G A+ L
Sbjct: 233 --DINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALEL 290
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M V+ ++VT+ ++ AC HAGLVEEG+ LFD M + GV ++KHY +VDLLG
Sbjct: 291 FEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLG 349
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L EAY I +PI PD +LW+SLL AC +G+V + E + L+++
Sbjct: 350 RAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSN------- 402
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ DFV LSN+YA+ ERW DV VR+ MK + V PG S ++
Sbjct: 403 -SCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIE 445
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 171/489 (34%), Positives = 251/489 (51%), Gaps = 71/489 (14%)
Query: 22 SHIKQIHAQLITNALKSPPL--------YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+H+ QIHA L+ L P+ YA L +L C+ FVF FD PN
Sbjct: 61 AHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSV-----------FVFNTFDEPN 109
Query: 74 LFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+F F+ +I + Q + A+ +L+ F S + CSL + G+ +H
Sbjct: 110 VFSFSAIIH-SHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLES---GKVLHC 165
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT---------------- 177
K G ++ V T L+ YA D+ +++FD+MP RS +
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDK 225
Query: 178 ---------------WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
WN MI GY +QS + +L LFR MLV + P + T++
Sbjct: 226 ARSLFEGMKERDVVCWNVMIGGY-AQSGVPNE----SLKLFRRMLV--AKAIPNEVTVLA 278
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VLS QLG LE G +H Y+E + +V +GTAL+DMYSKCG L++A L+F R+R+
Sbjct: 279 VLSACGQLGALESGRWIHSYIENKGI--QINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+V+ W +M G A+HG A++L + M + G KP +TF + +AC H GLVEEG
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F M+ K+G+EP I+HY C+V+LLGRAGHLEEAY + + I D +LW +LL C +H
Sbjct: 397 FRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHV 456
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ LGE++ K L+ + S +V LSN+YA+ W V +R MK +E
Sbjct: 457 NIKLGEEIAKFLVDQK--------LANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIE 508
Query: 463 TEPGSSILQ 471
E G S ++
Sbjct: 509 KEHGCSSIE 517
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 223/387 (57%), Gaps = 21/387 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+S+ +FA +L D T+ L + A+ C +G+ IH V + GF+ +V +
Sbjct: 72 NSLYIFALMHKFSILP-DSSTFPAVLKATAQLCDTG---VGKMIHGIVIQMGFICDVYTS 127
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T L+H Y + IS ++FD+MP R++ TWNA+I GY K K A+ FR ML
Sbjct: 128 TALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVK-----AIDAFRGML 182
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D G +P++ T+V VLS S LG G +H ++ +VF+GTAL+DMY+KC
Sbjct: 183 AD--GAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHN--RLRLNVFVGTALIDMYAKC 238
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + +F +REKNV TW + +G A++G+G+ A++ M KP+ VTF +
Sbjct: 239 GAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVL 298
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
ACCH GLV EG F +MK ++G++P I+HY C+VDLLGRAG LEEA I + I+PD
Sbjct: 299 CACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPD 358
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
I+WR+LL AC VHG+ LGE + K L++L+P E++V LSNIY+ RW
Sbjct: 359 PIIWRALLCACRVHGNTKLGEYIIKRLIELEPN--------NGENYVLLSNIYSRERRWA 410
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTT 474
+V +R M ++ + PG S ++
Sbjct: 411 EVGKLRGMMNLRGIRKVPGCSSIEINN 437
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 257/495 (51%), Gaps = 54/495 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK +K+IHA ++ +L + C A T+ + +F PN
Sbjct: 21 LKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAE---TEYANLLFKRVADPNA 77
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTF---------DDFTYVFALGSCARFCSLSTL 125
FL+N +IR + V V A V K +L D FT+ F + SCA L
Sbjct: 78 FLYNAMIRAYK-HNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCA---GLMCY 133
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LG+Q+H HV K G N +V +L+ Y + KVF++M R + +WN +I+G+
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGH 193
Query: 186 C--SQSKKAK------------------------DCAFNALVLFRDMLVDVSGVKPTDTT 219
Q ++A+ C +AL FR M + G++P + +
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM--QMVGIEPDEIS 251
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+V VL +QLG LE G +H Y +K ++ ++ + AL++MY+KCG +D +F +
Sbjct: 252 LVSVLPACAQLGALELGKWIHFYADKAGFL--RNICVCNALIEMYAKCGSIDEGRRLFDQ 309
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E++V++W+ M G+A HG+ +EAI L M+ ++PN +TF L +AC HAGL+ EG
Sbjct: 310 MNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEG 369
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
L F++MK + +EP ++HY C+V+LLG +G L++A I +P+KPD+ +W SLLS+C
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCR 429
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
H ++ + + LL+L+P T ++V LSN+YA +W V +RK M+ K
Sbjct: 430 SHSNLEIAVIAMEHLLELEPADT--------GNYVLLSNLYADLGKWDGVSRMRKLMRSK 481
Query: 460 RVETEPGSSILQTTT 474
++ PG S ++
Sbjct: 482 SMKKTPGCSSIEVDN 496
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/387 (39%), Positives = 223/387 (57%), Gaps = 21/387 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+S+ +FA +L D T+ L + A+ C +G+ IH V + GF+ +V +
Sbjct: 72 NSLYIFALMHKFSILP-DSSTFPAVLKATAQLCDTG---VGKMIHGIVIQMGFICDVYTS 127
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T L+H Y + IS ++FD+MP R++ TWNA+I GY K K A+ FR ML
Sbjct: 128 TALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVK-----AIDAFRGML 182
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D G +P++ T+V VLS S LG G +H ++ +VF+GTAL+DMY+KC
Sbjct: 183 AD--GAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHN--RLRLNVFVGTALIDMYAKC 238
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + +F +REKNV TW + +G A++G+G+ A++ M KP+ VTF +
Sbjct: 239 GAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVL 298
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
ACCH GLV EG F +MK ++G++P I+HY C+VDLLGRAG LEEA I + I+PD
Sbjct: 299 CACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPD 358
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
I+WR+LL AC VHG+ LGE + K L++L+P E++V LSNIY+ RW
Sbjct: 359 PIIWRALLCACRVHGNTKLGEYIIKRLIELEPN--------NGENYVLLSNIYSRERRWA 410
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTT 474
+V +R M ++ + PG S ++
Sbjct: 411 EVGKLRGMMSLRGIRKVPGCSSIEINN 437
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 166/511 (32%), Positives = 269/511 (52%), Gaps = 74/511 (14%)
Query: 14 KLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
++KA + +KQ+HA L+ T + ++++L T + + VF
Sbjct: 21 QIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSAT--SDFRDIGYALSVFDQLPER 78
Query: 73 NLFLFNTLIRCTPPQ-----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
N F +NT+IR D++LVF +S+ + + FT+ L +CA L+
Sbjct: 79 NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAE--- 135
Query: 128 GRQIHVHVTK-----------------------------------------------RGF 140
G+Q+H + K RG
Sbjct: 136 GKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGR 195
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
FNV++ ++ YA ++ + +++FD+M RS +WN MI+GY +Q+ K+ A+
Sbjct: 196 EFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGY-AQNGFYKE----AI 250
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+F M+ + V P T+V VL S+LG+LE G VH Y EK D +G+AL
Sbjct: 251 EIFHRMM-QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKI--RIDDVLGSAL 307
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY+KCG ++ A+ +F R+ + NV+TW A+ G+A+HGK N+ L M CG+ P+
Sbjct: 308 VDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSD 367
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VT+ ++ +AC HAGLV+EG F++M + G++P I+HY C+VDLLGRAG+LEEA I+
Sbjct: 368 VTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELIL 427
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P+KPD ++W++LL A +H ++ +G + ++L+Q+ P S +VALSN+Y
Sbjct: 428 NMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPH--------DSGAYVALSNMY 479
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
AS+ W V +VR MK + +PG S ++
Sbjct: 480 ASSGNWDGVAAVRLMMKDMDIRKDPGCSWIE 510
>gi|356570151|ref|XP_003553254.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 465
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 172/472 (36%), Positives = 258/472 (54%), Gaps = 23/472 (4%)
Query: 5 PGHRCFALLKL--KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIV 62
P R A L L TT +KQ+HAQ+I +A+ + +A +L+ + SP +
Sbjct: 13 PLQRTLATLALISDKCTTLDQLKQVHAQMIVSAVVATDPFAA-SRLFFSCALSPFGDLSL 71
Query: 63 HFVFTHFDP-PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
F H P PN F++NTLIR L + + + T+ F L +CAR S
Sbjct: 72 AFRIFHSTPRPNSFMWNTLIRAQTHAPHALSLYVAMRRSNVLPGKHTFPFLLKACARVRS 131
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
+ +Q+HVHV K G F+ V L+ Y+ + S ++VFD+ P + S+ W M
Sbjct: 132 FTA---SQQVHVHVIKFGLDFDSHVVDALVRCYSVSGHCVSARQVFDETPEKISSLWTTM 188
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+ GY C+ AL LF DM+ + G +P T+ VLS ++ G LE G +H
Sbjct: 189 VCGYAQNF-----CSNEALRLFEDMVGE--GFEPGGATLASVLSACARSGCLELGERIHE 241
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+M+ V +GTALV MY+K G + A +F M E+NV+TW AM G+ +G
Sbjct: 242 FMKVKGVGLGEGVILGTALVYMYAKNGEIAMARRLFDEMPERNVVTWNAMICGLGAYGYV 301
Query: 302 NEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
++A+ L + M+ GV PN VTF + +ACCHAGL++ G +F +MKS +G+EP I+HY
Sbjct: 302 DDALGLFEKMKKEGVVVPNGVTFVGVLSACCHAGLIDVGREIFRSMKSVYGIEPKIEHYG 361
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGR G L EA + G+P K D ++ +LL+A + G+ + E+V K +L L+P+
Sbjct: 362 CLVDLLGRGGWLLEAVELVKGMPWKADVVILGTLLAASRISGNTEVAERVVKDILALEPQ 421
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
V VALSN+YA A +W +V +RK MK +R++ PG S++ T
Sbjct: 422 NHGVH--------VALSNMYAEAGQWQEVLRLRKTMKEERLKKAPGWSLVAT 465
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 248/463 (53%), Gaps = 29/463 (6%)
Query: 22 SHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
S +KQ+HA + P LY +++QL +S VF + + F++
Sbjct: 43 SQLKQLHAFTLRTTYPDEPATLFLYGKILQL----SSSFSDVNYAFRVFDSIENHSSFMW 98
Query: 78 NTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLIR + +++ +++ + +G D T+ F L +CA LS G+Q+H
Sbjct: 99 NTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGLSE---GKQVH 155
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ K GF +V V LIHFY S + +KVFD+MP RS +WN+MI+ +
Sbjct: 156 CQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRVGEYD 215
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-E 251
+AL LFRDM +P TM VLS + LG L G H ++ + +
Sbjct: 216 -----SALQLFRDMQ---KSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDVA 267
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV I +L++MY KCG L A +F MR+ ++ +W AM G A HGK EA+ D M
Sbjct: 268 MDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDCM 327
Query: 312 RDCG--VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
G VKPN+VTF +L AC H G+V +G FD M ++G+EP ++HY CI+DLL RA
Sbjct: 328 VKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARA 387
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKILLQLQPEVTFVDVAC 428
G++ EA + +M +P+KPDA++WRSLL AC G V L E++ + ++ + + C
Sbjct: 388 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSNC 447
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V LS +YASA RW DV VRK M + EPG S ++
Sbjct: 448 SGA-YVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIE 489
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/466 (35%), Positives = 258/466 (55%), Gaps = 28/466 (6%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T H++QIHA L+ T+ +++ ++ P+ VF+ P L
Sbjct: 22 TGKLHLRQIHAVLLRTSLIRNSDVFHHFFSRLALSLI-PRDINYSCRVFSQRLNPTLSHC 80
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+IR P + +F + + FAL C + L G QIH
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRALRRNISFPANPLSSSFALKCCIKS---GDLLGGLQIHG 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ GF+ + L+ TTL+ Y++ ++ + KVFD++P R + +WN +I+ Y ++K+ +
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYL-RNKRTR 196
Query: 194 DCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
D LVLF M DV VKP + T + L + LG L+FG VH ++++
Sbjct: 197 D----VLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGL--SG 250
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ + LV MYS+CG +D A +F+RMRE+NV++WTAM +G+A++G G EAI + M
Sbjct: 251 ALNLSNTLVSMYSRCGSMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEML 310
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-KWGVEPHIKHYSCIVDLLGRAGH 371
G+ P T T L +AC H+GLV+EG+ FD M+S ++ ++P++ HY CIVDLLGRA
Sbjct: 311 KFGISPEEQTLTGLLSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARL 370
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L++AY+ I + +KPD+ +WR+LL AC VHG+V LGE+V L++ + E +
Sbjct: 371 LDKAYSLIKSMEMKPDSTIWRTLLGACRVHGNVELGERVIAHLIEFKAE--------EAG 422
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D+V L N Y+S +W V +R MK KR++T PG S LQ T H
Sbjct: 423 DYVLLLNTYSSVGKWEKVTELRSLMKKKRIQTNPGCSAIELQGTVH 468
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 167/500 (33%), Positives = 257/500 (51%), Gaps = 48/500 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQIHA+++ L +C S VF FD P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 75 FLFNTLIR---CT-PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+N +IR C+ P+ S+L++ + + +T+ L +C+ +LS Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSA-PHNAYTFPSLLKACS---NLSAFEETTQ 136
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH +TK G+ +V +LI+ YA + +FD++P +WN++I GY K
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 191 K--------------------------AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
D AL LF +M S V+P + ++ L
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM--QNSDVEPDNVSLANAL 254
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG LE G +H Y+ KT D +G L+DMY+KCG ++ AL +F +++K+
Sbjct: 255 SACAQLGALEQGKWIHSYLNKT--RIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKS 312
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V WTA+ +G A HG G EAI M+ G+KPN +TFT++ AC + GLVEEG +F
Sbjct: 313 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+ + ++P I+HY CIVDLLGRAG L+EA FI +P+KP+A++W +LL AC +H ++
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI 432
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE++G+IL+ + P +V +NI+A ++W R+ MK + V
Sbjct: 433 ELGEEIGEILIAIDP--------YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKV 484
Query: 465 PGSSI--LQTTTHYTLDGFR 482
PG S L+ TTH L G R
Sbjct: 485 PGCSTISLEGTTHEFLAGDR 504
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 165/453 (36%), Positives = 256/453 (56%), Gaps = 30/453 (6%)
Query: 24 IKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
++QIHA++I L ++ L +L+ + ASP S +F P+ FLF++LI
Sbjct: 35 LQQIHARIIITGLGRTRSLITKLLS-FAYAAASPIS--YTRRLFFSIPKPDTFLFHSLIT 91
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
T PQ+S+L + + + + ++T+ + S A + S +G IH HV
Sbjct: 92 LTSKFSFPQESLLCYRRMLLANISS-SNYTFSAVIKSSADLTAFS---IGETIHCHVYIC 147
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G+ + V L+ FYA + + +KVFD+MP ++ WN+MI+GY Q+ K+ A
Sbjct: 148 GYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGY-EQNGFGKE-AVE 205
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
L +D+ GVKP +T V +LS +Q+G + G VH Y+ + + + +V +GT
Sbjct: 206 LFFLMQDL-----GVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCF--DLNVVLGT 258
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL++MYS+CG + A +F M EKN++ WTAM +G +HG G++AI L + M G +P
Sbjct: 259 ALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRP 318
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N VTF ++ +AC HAGLV+EG +F MK ++G+ P ++H C+VD+LGRAGHL EAY F
Sbjct: 319 NNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQF 378
Query: 379 IMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I P +P +W ++L AC +H + LG +V + LL ++PE +V LS
Sbjct: 379 IKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPE--------NPGHYVMLS 430
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
NIYA A R VE +R M R++ E G S +
Sbjct: 431 NIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTI 463
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 171/523 (32%), Positives = 260/523 (49%), Gaps = 75/523 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + S +KQI +Q++ L + + +C + +F +P N
Sbjct: 57 LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNP-NT 115
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +N IR P+++V+++ + D++TY +CAR LS + +G +
Sbjct: 116 FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACAR---LSLIRMGSE 172
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
I HV GF ++ V+ +IH S D+ +K+FD+ +R +WN+MINGYC +
Sbjct: 173 ILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLE 232
Query: 191 KAK---------------------------DCA--------------FNALV-------- 201
A+ D A +NA++
Sbjct: 233 SARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR 292
Query: 202 ------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
LF +M + P + TMV LS SQLG L+ G +H Y+EK + +V
Sbjct: 293 GKEALALFNEM--QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK--HELSLNVA 348
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+GTAL+DMY+KCG + A+ +F + +N LTWTA+ +G+A+HG + AI M D
Sbjct: 349 LGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNS 408
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
V P+ VTF L +ACCH GLVEEG F M SK+ + P +KHYSC+VDLLGRAG LEEA
Sbjct: 409 VMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEA 468
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
I +PI+ DA++W +L AC +HG+V +GE+ LLQ+ P + + +V
Sbjct: 469 EELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGI--------YVL 520
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
L+N+Y AE W + RK M+ + VE P S L + + L
Sbjct: 521 LANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWSLLSVLRFFL 563
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 259/490 (52%), Gaps = 49/490 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + H+ Q H +++ L + L+ + +S + H +FTH P++
Sbjct: 48 LKQCSNLKHLHQTHCFMLSRGLDQDNI---LLSRFIEACSSLGFSHYSHSIFTHKTRPDI 104
Query: 75 FLFNTLIRC-TPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+L+NT+I+ + P+ +++L++ ++ L FD ++ F L + R ++ +GRQ
Sbjct: 105 YLYNTIIKALSNPELATEAILLYNRILASDL-RFDTYSLPFVLKAVVRLLAIH---VGRQ 160
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS--- 187
IH G + ++ V T LI Y+S +S +++FD + R A WNAM+ GY
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220
Query: 188 -----------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
D A+ +FR M + V+P + M+ L
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM--QLEEVEPDEIAMLAAL 278
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + LG LE G +H Y++K + V + AL+DMY+KCG ++ AL +F M K+
Sbjct: 279 SACAHLGALELGEWIHNYIDK--HGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKS 336
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWT+M G+A+HG G EA+ + M +KPN +TF ++ +ACCH GLVE G F
Sbjct: 337 VITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFK 396
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M +K+G++P I+HY C++DLLGRAG L+EA + G+P + +A +W SLL+A +HGD
Sbjct: 397 CMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDA 456
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG++ + L++++P S ++ LSNIYA+ +W + VRK M+ V+
Sbjct: 457 ELGKQALQHLIKVEPH--------NSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKM 508
Query: 465 PGSSILQTTT 474
PG S ++
Sbjct: 509 PGGSCIEVNN 518
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 259/490 (52%), Gaps = 49/490 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + H+ Q H +++ L + L+ + +S + H +FTH P++
Sbjct: 48 LKQCSNLKHLHQTHCFMLSRGLDQDNI---LLSRFIEACSSLGFSHYSHSIFTHKTRPDI 104
Query: 75 FLFNTLIRC-TPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+L+NT+I+ + P+ +++L++ ++ L FD ++ F L + R ++ +GRQ
Sbjct: 105 YLYNTIIKALSNPELATEAILLYNRILASDL-RFDTYSLPFVLKAVVRLLAIH---VGRQ 160
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS--- 187
IH G + ++ V T LI Y+S +S +++FD + R A WNAM+ GY
Sbjct: 161 IHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGD 220
Query: 188 -----------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
D A+ +FR M + V+P + M+ L
Sbjct: 221 VDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM--QLEEVEPDEIAMLAAL 278
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + LG LE G +H Y++K + V + AL+DMY+KCG ++ AL +F M K+
Sbjct: 279 SACAHLGALELGEWIHNYIDK--HGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKS 336
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWT+M G+A+HG G EA+ + M +KPN +TF ++ +ACCH GLVE G F
Sbjct: 337 VITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFK 396
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M +K+G++P I+HY C++DLLGRAG L+EA + G+P + +A +W SLL+A +HGD
Sbjct: 397 CMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDA 456
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG++ + L++++P S ++ LSNIYA+ +W + VRK M+ V+
Sbjct: 457 ELGKQALQHLIKVEPH--------NSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKM 508
Query: 465 PGSSILQTTT 474
PG S ++
Sbjct: 509 PGGSCIEVNN 518
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 261/493 (52%), Gaps = 65/493 (13%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKA--SPQSTKIVHFVFTHFDPPNLFL 76
TT +KQIH QL+ N L + P QL+ + A +P + + V + P LF
Sbjct: 20 TTLRELKQIHTQLLINGLLNDP---QLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFT 76
Query: 77 FNTLIRC----TPPQDSVLVFAYWV-SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
FN++IR + P S ++ + S G L D++T+ F + + A+ + T G +
Sbjct: 77 FNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGT---GSSV 133
Query: 132 HVHVTKRGFMFNVLVATTLIHFYAS-------------------------------NKDI 160
H K GF ++ V + LI+ YA D+
Sbjct: 134 HGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDV 193
Query: 161 SSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
+K+FD+M + WNAMI+GY C QS++ AL LF L+ GVK +
Sbjct: 194 GFARKLFDKMSHKDPIAWNAMISGYVQCGQSRE-------ALSLFN--LMQREGVKVNEV 244
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
+MV VLS S LG L+ G H Y+E+ + +GTAL+DMY+KCG ++ A+ +F
Sbjct: 245 SMVSVLSACSHLGALDQGRWAHAYIERNKL--RMTLTLGTALIDMYAKCGNMNKAMEVFW 302
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M+EKNV TW++ G+A++G G + + L M+ V+PN +TF S+ C GLVEE
Sbjct: 303 GMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEE 362
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G F++M +G+EP ++HY C+VDL GRAGHL+EA NFI +P++P W +LL+AC
Sbjct: 363 GRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNAC 422
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
++ ++ +GE + +++L+ A +V LSNIYA ++ W V +VR+ M V
Sbjct: 423 KIYRNMEMGELASRKIVELE--------AKNHGAYVLLSNIYADSKDWDRVSNVRQTMNV 474
Query: 459 KRVETEPGSSILQ 471
K V +PG S+++
Sbjct: 475 KGVRKQPGCSVIE 487
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 239/411 (58%), Gaps = 24/411 (5%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F D P F FNT+IR ++++ ++ + +G+ + D+FTY +CA
Sbjct: 41 IFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVES-DNFTYPALFKACA--- 96
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
SL ++ G QIH ++ KRG ++ V +LI+ Y I VF+ M R A+W+A
Sbjct: 97 SLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSA 156
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I + S ++ L +F +M + S +P ++ +V VLS + LG L+ G C H
Sbjct: 157 IIAAHASLGMWSE-----CLSVFGEMSREGS-CRPEESILVSVLSACTHLGALDLGRCTH 210
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ + + E +V + T+L+DMY KCGC++ L +F RM +KN L+++ M TG+A+HG+
Sbjct: 211 VTLLRN--IREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGR 268
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA+++ M + G+KP+ V + + +AC HAGLV+EGL F+ MK + G+EP I+HY
Sbjct: 269 GMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYG 328
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIV L+GRAG L +A I +PIKP+ ++WR LLSAC H ++ +GE K L +L
Sbjct: 329 CIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELN-- 386
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V LSN+YA A+RW DV +R +M K PG S++Q
Sbjct: 387 ------SSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQ 431
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
S G +D A IF ++ + + M G A+ L M + GV+ + T+
Sbjct: 30 SDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYP 89
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+LF AC +EEG+ + + K G+E + + ++++ G+ G +E + + +
Sbjct: 90 ALFKACASLRSIEEGMQIHGYI-FKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMD- 147
Query: 385 KPDAILWRSLLSA 397
+ D W ++++A
Sbjct: 148 RRDVASWSAIIAA 160
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 225/377 (59%), Gaps = 24/377 (6%)
Query: 99 KGLLT----FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY 154
KG+L FD+ T + +C R L LG+ I + ++G + + +AT L+ Y
Sbjct: 261 KGMLEVRAPFDEVTLLSVATACGR---LGDANLGQWIAEYAEEKGMLRSRNLATALVDMY 317
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
A ++ +++FD+M R W+AMI+GY +QS + ++ AL +F +M + V
Sbjct: 318 AKCGELDKARRLFDRMHSRDVVAWSAMISGY-TQSDRCRE----ALAIFNEM--QGTEVN 370
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P D TMV VLS + LG LE G VH Y+ + +P V +GTALVD Y+KCGC+ +A+
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVHSYIRRK-DLPLT-VILGTALVDFYAKCGCIKDAV 428
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
F M +N TWTA+ GMA +G+ EA+ L SM + ++P VTF + AC H
Sbjct: 429 KAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGC 488
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LVEEG F +M +G+ P I+HY C+VDLLGRAG ++EAY FI +PI+P+A++WR+L
Sbjct: 489 LVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRAL 548
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
LSAC VH +V +GE+ K ++ L P C S +++ LSN YAS +W + VRK
Sbjct: 549 LSACTVHKNVEIGEEALKQIVPLDP--------CHSGNYILLSNTYASVGQWKNAAMVRK 600
Query: 455 QMKVKRVETEPGSSILQ 471
+MK K VE PG S+++
Sbjct: 601 EMKEKGVEKIPGCSLIE 617
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/362 (28%), Positives = 182/362 (50%), Gaps = 23/362 (6%)
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
L + +R P+D++ +F + ++ D T + SC+R C LS +GR + +
Sbjct: 140 ILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLS---VGRGVQAY 196
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
KRGFM + V +LIH YAS D+ + +F + ++ WNAMI GY K+
Sbjct: 197 AFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGY------VKN 250
Query: 195 CAFNALV-LFRDMLVDVSGVKPTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
+ +V +F+ ML +V P D T++ V + +LG G + Y E+ +
Sbjct: 251 GDWKEVVEMFKGML-EVRA--PFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSR 307
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ + TALVDMY+KCG LD A +F RM ++V+ W+AM +G + EA+ + + M+
Sbjct: 308 N--LATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQ 365
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
V PN VT S+ +AC G +E G + ++ K + + + +VD + G +
Sbjct: 366 GTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-DLPLTVILGTALVDFYAKCGCI 424
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--LQP-EVTFVDV--A 427
++A +P++ + W +L+ +G ++ +L+ ++P +VTF+ V A
Sbjct: 425 KDAVKAFESMPVR-NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLA 483
Query: 428 CT 429
C+
Sbjct: 484 CS 485
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 26/453 (5%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-- 83
QI A I + ++ A+LI +CT+ + S +F P++ +FN++ R
Sbjct: 47 QIQAYAIKSHIEDVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYS 105
Query: 84 --TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
T P + +F + G+L D++T+ L +CA +L GRQ+H K G
Sbjct: 106 RFTNPLEVFSLFVEILEDGILP-DNYTFPSLLKACAVAKALEE---GRQLHCLSMKLGLD 161
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
NV V TLI+ Y +D+ S + VFD++ +NAMI GY +++ + AL
Sbjct: 162 DNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNE-----ALS 216
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR+M +KP + T++ VLS + LG L+ G +H Y +K + V + TAL+
Sbjct: 217 LFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY--VKVNTALI 272
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DM++KCG LD+A+ IF +MR K+ W+AM A HGK +++ + + MR V+P+ +
Sbjct: 273 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 332
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF L AC H G VEEG F M SK+G+ P IKHY +VDLL RAG+LE+AY FI
Sbjct: 333 TFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDK 392
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI P +LWR LL+AC+ H ++ L EKV + + +L D+V LSN+YA
Sbjct: 393 LPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS--------HGGDYVILSNLYA 444
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
++W V+S+RK MK ++ PG S ++
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 251/463 (54%), Gaps = 27/463 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L+A T + Q+H +I ++ PL + A P + +V F +
Sbjct: 14 LQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLV-FSVEDARVYD 72
Query: 74 LFLFNTLIRC---TPPQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLSTLWLGR 129
FLF+T+IR + +F Y + G ++ + + + F L +CA L L LG+
Sbjct: 73 AFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACA---GLRDLNLGK 129
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYAS-NKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+H + K GF ++ V T++H Y + + +K+FD+MP TW AMI GY
Sbjct: 130 AVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARL 189
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ A A+ LFR M ++GV P D TMV VLS + LG LE G + Y+EK
Sbjct: 190 GQSA-----GAVGLFRKM--QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERV 242
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ V + ALVDM++KCG +D AL +F M ++ +++WT++ G+A+HG+G EA+ L
Sbjct: 243 L--KTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLF 300
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
+ M+ G+ P + F L +AC H+GLVE G F M ++G+ P I+HY C+VDLL R
Sbjct: 301 EEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSR 360
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG + EA F+ +PI+P+ I+WR+L+SAC VHG++ LGE + K L++ +P
Sbjct: 361 AGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEP--------M 412
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++V LSNIY W +R M K ++ PGS++++
Sbjct: 413 HESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIE 455
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/466 (35%), Positives = 257/466 (55%), Gaps = 28/466 (6%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T H++QIHA L+ T+ +++ ++ + P+ VF+ P L
Sbjct: 22 TGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLI-PRDINYSCRVFSQRLNPTLSHC 80
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+IR P + +F L + + FAL C + L G QIH
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKS---GDLLGGLQIHG 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ GF+ + L+ TTL+ Y++ ++ + KVFD++P R + +WN + + Y ++K+ +
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYL-RNKRTR 196
Query: 194 DCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
D LVLF M DV G VKP T + L + LG L+FG VH ++++
Sbjct: 197 D----VLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL--SG 250
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ + LV MYS+CG +D A +F MRE+NV++WTA+ +G+A++G G EAI + M
Sbjct: 251 ALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEML 310
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-KWGVEPHIKHYSCIVDLLGRAGH 371
G+ P T T L +AC H+GLV EG+ FD M+S ++ ++P++ HY C+VDLLGRA
Sbjct: 311 KFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARL 370
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L++AY+ I + +KPD+ +WR+LL AC VHGDV LGE+V L++L+ E +
Sbjct: 371 LDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAE--------EAG 422
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D+V L N Y++ +W V +R MK KR+ T+PG S LQ T H
Sbjct: 423 DYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 225/366 (61%), Gaps = 21/366 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+V L +C R LS +G+ +H V KR F ++V L+ Y + + +K+F
Sbjct: 205 TFVSVLVACGRMGYLS---MGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLF 261
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D++P R +W ++I+G Q K+ KD +L LF DM +SGV+P + VLS
Sbjct: 262 DELPDRDIVSWTSIISGLV-QCKQPKD----SLELFYDM--QISGVEPDRIILTSVLSAC 314
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG L++G V Y+E+ E D+ IGTALVDMY+KCGC++ AL IF+ + +N+ T
Sbjct: 315 ASLGALDYGRWVQEYIERQGI--EWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFT 372
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W A+ G+A+HG G+EA++ + M G++PN VTF ++ ACCH+GLV EG F M
Sbjct: 373 WNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMI 432
Query: 348 SK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
S+ + P ++HY C++DLL RAG L+EAY FI +P+ PD ++W +LLSAC +G+V L
Sbjct: 433 SQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVEL 492
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
+++ LL+L+ + + V +V LSNIYA+ ERW DV VR+ MK K + PG
Sbjct: 493 SQEILSHLLELKSQDSGV--------YVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPG 544
Query: 467 SSILQT 472
SS+++
Sbjct: 545 SSVIEV 550
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 210/451 (46%), Gaps = 53/451 (11%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
HRC T +KQIHA LI + L L + K S K + FV
Sbjct: 13 HRC---------KTIRSLKQIHAHLIASGL--------LHDEFVLSKVSEFFGKHIGFVD 55
Query: 67 THFDPPN-------LFLFNTLI-----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALG 114
FD N +NTLI CTP + + LV+ V G + D +T+ L
Sbjct: 56 YAFDFLNQTDLHVGTLPYNTLIAAYASSCTP-KAAFLVYGRIVGNGFVP-DMYTFPVVLK 113
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+C +F + G Q+H K GF+ ++ V +L+HFY+ +VFD+M +R
Sbjct: 114 ACTKFLGVQE---GEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRD 170
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+W +I+GY D A N LF M V P T V VL ++G L
Sbjct: 171 VVSWTGLISGYVRTG--LFDEAIN---LFLKM-----DVVPNVATFVSVLVACGRMGYLS 220
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G VHG + K + + +G ALVDMY KC CL A +F + ++++++WT++ +G
Sbjct: 221 MGKGVHGLVYKRAFGI--GLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISG 278
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ + +++ L M+ GV+P+ + TS+ +AC G ++ G + + ++ + G+E
Sbjct: 279 LVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQ-GIEW 337
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGK 412
I + +VD+ + G +E A + GIP + + W +LL A + HG AL
Sbjct: 338 DIHIGTALVDMYAKCGCIEMALHIFNGIPNR-NIFTWNALLGGLAMHGHGHEALKHFELM 396
Query: 413 ILLQLQP-EVTFVDV--ACTSEDFVALSNIY 440
I ++P EVTF+ + AC VA Y
Sbjct: 397 IGAGIRPNEVTFLAILTACCHSGLVAEGRSY 427
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/483 (36%), Positives = 260/483 (53%), Gaps = 46/483 (9%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI----VHFVFTHFDPPNLFLFNT 79
+KQIH Q+IT L Q YC S+K +F + P +FL+NT
Sbjct: 165 LKQIHTQIITTGLS--------FQTYCLSHLIKISSKFNLPYAFKIFNYISNPTIFLYNT 216
Query: 80 LIRCTPPQ--DSVLVFAYWVSKGLLTFDDFT-YVFALGSCARFCSLSTLWL--GRQIHVH 134
LI Q + + A+ + +LT + F S + C + W G +H H
Sbjct: 217 LISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTH 276
Query: 135 VTKRGFM---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
V K F+ F+ V +L++FYA + + +FD++ ATWN ++N Y S
Sbjct: 277 VLK--FLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSY 334
Query: 192 AK--------DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
D + +L LFRDM V G++P + T+V ++S S LG + G VH ++
Sbjct: 335 HSYSNSFDDADFSLESLYLFRDM--QVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFV 392
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKG 301
+ + + F+GTA VDMYSKCGCL+ A +F +M E ++ +TAM G A+HG G
Sbjct: 393 LRN--KIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYG 450
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
N+A+ L M+ G+ P++ TF AC H GLVEEGL +F +MK GVEP ++HY C
Sbjct: 451 NQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGC 510
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
++DLLGRAG L+EA ++ +P+KP+A+LWRSLL A +HG++ +GE L++L+PE
Sbjct: 511 LIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPE- 569
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLD 479
TS ++V LSN+YAS R DV+ VRK MK V PG S+++ H L
Sbjct: 570 -------TSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLT 622
Query: 480 GFR 482
G R
Sbjct: 623 GDR 625
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 163/453 (35%), Positives = 248/453 (54%), Gaps = 26/453 (5%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-- 83
QI A I + ++ A+LI +CT+ + S +F P++ +FN++ R
Sbjct: 47 QIQAYAIKSHIEDVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYS 105
Query: 84 --TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
T P + +F + G+L D++T+ L +CA +L GRQ+H K G
Sbjct: 106 RFTNPLEVFSLFVEILEDGILP-DNYTFPSLLKACAVAKALEE---GRQLHCLSMKLGLD 161
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
NV V TLI+ Y +D+ S + VFD++ +NAMI GY +++ + AL
Sbjct: 162 DNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNE-----ALS 216
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR+M +KP + T++ VLS + LG L+ G +H Y +K + V + TAL+
Sbjct: 217 LFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY--VKVNTALI 272
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DM++KCG LD+A+ IF +MR K+ W+AM A HGK +++ + + MR V+P+ +
Sbjct: 273 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 332
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF L AC H G VEEG F M SK+G+ P IKHY +VDLL AG+LE+AY FI
Sbjct: 333 TFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDK 392
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI P +LWR LL+AC+ H ++ L EKV + + +L D+V LSN+YA
Sbjct: 393 LPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS--------HGGDYVILSNLYA 444
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
++W V+S+RK MK ++ PG S ++
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 167/496 (33%), Positives = 263/496 (53%), Gaps = 65/496 (13%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T H+KQIHA I PL A + + T ++ + K F+ PN F +NT
Sbjct: 27 TTRHLKQIHAHFIKTGQIHHPLAAAELLKFLT-LSTQREIKYARKFFSQIHHPNCFSWNT 85
Query: 80 LIRCTPPQ-----------DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+IR +++L F++ ++ GL+ + FT+ L +CA+ + G
Sbjct: 86 IIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEE---G 142
Query: 129 RQIHVHVTKRGFMF--------------------------------NVLVATTLIHFYAS 156
+Q+H V K G + NV++ +I Y
Sbjct: 143 KQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVR 202
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
D+ + +++FD MP +S +WN MI+G C+Q+ K+ A+ +F DM + V P
Sbjct: 203 MGDLRASRELFDSMPNKSVVSWNVMISG-CAQNGHFKE----AIEMFHDM--QLGDVPPN 255
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+V VL S+LG +E G VH + EK E D +G+AL+DMYSKCG +D A+ +
Sbjct: 256 YVTLVSVLPAVSRLGAIELGKWVHLFAEKNEI--EIDDVLGSALIDMYSKCGSIDKAVQV 313
Query: 277 FSRMR-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
F +R +KN +TW+A+ G+A+HG+ +A+ M+ GV P+ V + + +AC HAGL
Sbjct: 314 FEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGL 373
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
VEEG ++ +M + G+ P I+HY C+VDLLGRAG LEEA I+ +P+KPD ++ ++LL
Sbjct: 374 VEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALL 433
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
AC +HG++ +GE++ KIL+ P S +VALSN++AS W V VR +
Sbjct: 434 GACKMHGNIEMGERIAKILMGWYPH--------DSGSYVALSNMFASEGNWEGVVKVRLK 485
Query: 456 MKVKRVETEPGSSILQ 471
MK + +PG S ++
Sbjct: 486 MKELDIRKDPGCSWIE 501
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 259/498 (52%), Gaps = 57/498 (11%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ +L+A T + ++H ++ + +S L Q++ L + + + VF
Sbjct: 18 MARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAAR----VFAQVR 73
Query: 71 PPNLFLFNTLIRCTPP----QDSVLVFAYWVS------KGLLTFDDFTYVFALGSCARFC 120
PNL L N +I+ +D+V V+ + G D FTY F L +C
Sbjct: 74 DPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG--- 130
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L LG+Q+H HV + G + +V +LI Y D++ KVFD+M R +WN
Sbjct: 131 GTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNM 190
Query: 181 MINGYCSQSKKAKDCA-FN-------------------------ALVLFRDMLVDVSGVK 214
+I+ + + K A FN A+ FR M + G +
Sbjct: 191 LISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE--GFE 248
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P D ++V VL +QLG LE G ++ Y ++ + I AL++MY+KCGC+D AL
Sbjct: 249 PDDVSIVAVLPACAQLGALELGRWIYAYCKRHGML--TSTHICNALMEMYAKCGCIDQAL 306
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHA 333
+F M +K+V++W+ + G+A HG+ +EA+ L M G V+PN +TF L +AC +A
Sbjct: 307 QLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYA 366
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLV+EGL FD M +GVEP ++HY C+VDLLGR+G + A + + +P+ DA +W S
Sbjct: 367 GLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGS 426
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LLSAC HGDV + L++L+P+ DV + V L+N+YA+A RW DV S R
Sbjct: 427 LLSACRSHGDVDTAVLAAERLVELEPD----DVG----NLVMLANVYAAARRWSDVASTR 478
Query: 454 KQMKVKRVETEPGSSILQ 471
K ++ + + PG S+++
Sbjct: 479 KAIRSRSMRKTPGCSLIE 496
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 263/497 (52%), Gaps = 64/497 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L + TT +KQIHAQL+ L +P + Q + + + + + H + P
Sbjct: 16 LNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTT--NLDYANKLLNHNNNPT 73
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWV--SKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
LF N++IR + P S +A + + L+ D++T+ F + +CA+ + T
Sbjct: 74 LFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT--- 130
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYAS------------------------------- 156
G +H V K GF + V T L+ YA
Sbjct: 131 GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAK 190
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
DI +K+FD+MP R TWNAMI GY C +S++A D +F L+ + GVK
Sbjct: 191 CGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALD-------VFH--LMQMEGVK 241
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
+ +MV VLS + L +L+ G VH Y+E+ Y V +GTALVDMY+KCG +D A+
Sbjct: 242 LNEVSMVLVLSACTHLQVLDHGRWVHAYVER--YKVRMTVTLGTALVDMYAKCGNVDRAM 299
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M+E+NV TW++ G+A++G G E++ L + M+ GV+PN +TF S+ C G
Sbjct: 300 QVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVG 359
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LVEEG FD+M++ +G+ P ++HY +VD+ GRAG L+EA NFI +P++P W +L
Sbjct: 360 LVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSAL 419
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC ++ + LGE + +++L+ + +V LSNIYA + W V S+R+
Sbjct: 420 LHACRMYKNKELGEIAQRKIVELEDK--------NDGAYVLLSNIYADYKNWESVSSLRQ 471
Query: 455 QMKVKRVETEPGSSILQ 471
MK K V+ PG S+++
Sbjct: 472 TMKAKGVKKLPGCSVIE 488
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/420 (38%), Positives = 236/420 (56%), Gaps = 36/420 (8%)
Query: 68 HFDPPNL--FLFNTLIRC---------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
HF P L FL+NTLIR P + +F G+ D T+ F L S
Sbjct: 16 HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQP-DFHTFPFLLQS- 73
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
F S S L LGR +H + + G + V T+LI Y+S+ + + +F MP R+
Sbjct: 74 --FASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVI 131
Query: 177 TWNAMINGY--CSQSKKAKDCAFNALVLFRDM-LVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+W+ MINGY C Q K+A L LFR+M ++ V+ V+P + TM VL+ +LG L
Sbjct: 132 SWSCMINGYVRCGQYKEA-------LALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 184
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMA 292
E G H Y++K MP DV +GTAL+DMY+KCG ++ A +FS + K+V+ W+AM
Sbjct: 185 EHGKWAHAYIDKC-GMPV-DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMI 242
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
+G+A+HG E + L M + GV+PNAVTF ++F AC H GLV EG M + +
Sbjct: 243 SGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSI 302
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
P I+HY C+VDL GRAG ++EA+N + +P++PD ++W +LLS +HGD+ E K
Sbjct: 303 IPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALK 362
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
L++L+P S +V LSN+YA RW DV VR M+ ++ PG S+++
Sbjct: 363 KLIELEP--------TNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 414
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 259/498 (52%), Gaps = 57/498 (11%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ +L+A T + ++H ++ + +S L Q++ L + + + VF
Sbjct: 18 MARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAAR----VFAQVR 73
Query: 71 PPNLFLFNTLIRCTPP----QDSVLVFAYWVS------KGLLTFDDFTYVFALGSCARFC 120
PNL L N +I+ +D+V V+ + G D FTY F L +C
Sbjct: 74 DPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG--- 130
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L LG+Q+H HV + G + +V +LI Y D++ KVFD+M R +WN
Sbjct: 131 GTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNM 190
Query: 181 MINGYCSQSKKAKDCA-FN-------------------------ALVLFRDMLVDVSGVK 214
+I+ + + K A FN A+ FR M + G +
Sbjct: 191 LISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE--GFE 248
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P D ++V VL +QLG LE G ++ Y ++ + I AL++MY+KCGC+D AL
Sbjct: 249 PDDVSIVAVLPACAQLGALELGRWIYAYCKRHGML--TSTHICNALMEMYAKCGCIDQAL 306
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHA 333
+F M +K+V++W+ + G+A HG+ +EA+ L M G V+PN +TF L +AC +A
Sbjct: 307 QLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYA 366
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLV+EGL FD M +GVEP ++HY C+VDLLGR+G + A + + +P+ DA +W S
Sbjct: 367 GLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGS 426
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LLSAC HGDV + L++L+P+ DV + V L+N+YA+A RW DV S R
Sbjct: 427 LLSACRSHGDVDTAVLAAERLVELEPD----DVG----NLVMLANVYAAARRWSDVASTR 478
Query: 454 KQMKVKRVETEPGSSILQ 471
K ++ + + PG S+++
Sbjct: 479 KAIRSRSMRKTPGCSLIE 496
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/466 (36%), Positives = 266/466 (57%), Gaps = 30/466 (6%)
Query: 13 LKLKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L+ ++ S IKQ+ A LI N +L++L C + + +H +F +
Sbjct: 6 LLLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLEL-CAISSFGDLSYALH-IFRYIPY 63
Query: 72 PNLFLFNTLIRCTP----PQDSVLVF-AYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+ +N +IR T P ++V + A S GL D T FAL +CAR + S
Sbjct: 64 PSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSE-- 121
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q+H + + GF +VL+ TTL+ YA D+ +K+FD+MP A+WNA+I G+
Sbjct: 122 -AIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFA 180
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
S+ A +A++ F+ M VD ++P T+ L SQLG L+ G VH Y+ +
Sbjct: 181 QGSRPA-----DAIMTFKRMKVD-GNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEE 234
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAI 305
++V + ++DMY+KCG +D A +F MR +K+++TW M A+HG G++A+
Sbjct: 235 --KLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKAL 292
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L + + G+ P+AV++ ++ AC HAGLVE+GL LF++M + G+EP+IKHY +VDL
Sbjct: 293 DLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDL 351
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG L+EAY+ + +P P+ +LW++LL AC +GDV + E + L+ E+ F+
Sbjct: 352 LGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLV----EMGFIS 406
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
DFV LSN+YA+ +RW DV VR M+ + V+ PG S ++
Sbjct: 407 CG----DFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIE 448
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 164/498 (32%), Positives = 259/498 (52%), Gaps = 57/498 (11%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ +L+A T + ++H ++ + +S L Q++ L + + + VF
Sbjct: 18 MARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAAR----VFAQVR 73
Query: 71 PPNLFLFNTLIRCTPP----QDSVLVFAYWVS------KGLLTFDDFTYVFALGSCARFC 120
PNL L N +I+ +D+V V+ + G D FTY F L +C
Sbjct: 74 DPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG--- 130
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L LG+Q+H HV + G + +V +LI Y D++ KVFD+M R +WN
Sbjct: 131 GTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNM 190
Query: 181 MINGYCSQSKKAKDCA-FN-------------------------ALVLFRDMLVDVSGVK 214
+I+ + + K A FN A+ FR M + G +
Sbjct: 191 LISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTE--GFE 248
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P D ++V VL +QLG LE G ++ Y ++ + I AL++MY+KCGC+D AL
Sbjct: 249 PDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGML--TSTHICNALMEMYAKCGCIDQAL 306
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHA 333
+F M +K+V++W+ + G+A HG+ +EA+ L M G V+PN +TF L +AC +A
Sbjct: 307 QLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYA 366
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLV+EGL FD M +GVEP ++HY C+VDLLGR+G + A + + +P+ DA +W S
Sbjct: 367 GLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGS 426
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LLSAC HGDV + L++L+P+ DV + V L+N+YA+A RW DV S R
Sbjct: 427 LLSACRSHGDVDTAVLAAERLVELEPD----DVG----NLVMLANVYAAARRWSDVASTR 478
Query: 454 KQMKVKRVETEPGSSILQ 471
K ++ + + PG S+++
Sbjct: 479 KAIRSRSMRKTPGCSLIE 496
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 170/472 (36%), Positives = 263/472 (55%), Gaps = 40/472 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF----VFTHFD 70
L+ T +KQ+HA +IT L + Y + S+ IV +F H
Sbjct: 16 LEKCKTLDTLKQVHAHMITTGL--------IFHTYPLSRILLISSTIVFTHALSIFNHIP 67
Query: 71 PPNLFLFNTLIRC---TPPQDSVL--VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
P +FL+NTLI P + +++ ++ L + FT+ +C S
Sbjct: 68 NPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACG-----SQP 122
Query: 126 WL--GRQIHVHVTKRGFM---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
WL GR +H HV K F+ + V L+++YA + + + +F+Q+ A+WN+
Sbjct: 123 WLRHGRALHTHVLK--FLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNS 180
Query: 181 MINGYCSQSKK-AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+++ Y S +D + + VL + + S +K + T+V ++S ++LG L GA
Sbjct: 181 ILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWA 240
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H Y+ K + + + F+GTAL+DMYSKCGCLD A +F ++ ++ L + AM G AIHG
Sbjct: 241 HVYVLK--HNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHG 298
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G++A+ L M G+ P+ VT +C H GLVEEG +F++MK +GVEP ++HY
Sbjct: 299 YGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHY 358
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLLGRAG L EA ++ +P+KP+A++WRSLL A VHG++ +GE V K L+QL+P
Sbjct: 359 GCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEP 418
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
E TS ++V LSN+YAS RW DV+ VRK MK + PGSS+++
Sbjct: 419 E--------TSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVE 462
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 253/482 (52%), Gaps = 67/482 (13%)
Query: 15 LKAITTPSHIKQIHAQLI-TNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L T+P +KQ+HA L+ TN+ L S PL + C +S K++ F D
Sbjct: 22 LHNFTSPFELKQLHAHLLKTNSPLSSLPL--SRVASVCAFNSSFSYAKLI---FQLLDAS 76
Query: 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ +NT +R P D++ +F Y + + ++ D +T F L +C+R + G
Sbjct: 77 EVTHWNTCLRSFAEGDSPADAISLF-YRLREFDISPDHYTCSFVLKACSRLLDVRN---G 132
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN--------- 179
+ +H +V K G N+ + ++H YA +I +KVFD+MP R TWN
Sbjct: 133 KIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKM 192
Query: 180 ----------------------AMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+MI GY C +SK+A D LF +M + +G+ P
Sbjct: 193 GDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAID-------LFLEM--EDAGLLP 243
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
+ T+V VL + +G L G +H + ++ Y E ++ + L+DMY KCGCL++A
Sbjct: 244 NEVTVVAVLVACADMGNLVLGRRIHDFSNRSGY--EKNIRVCNTLIDMYVKCGCLEDACR 301
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
IF M E+ V++W+AM G+A HG+ +A+ L + M + GVKPNAVTF + AC H G+
Sbjct: 302 IFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGM 361
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
VE+G F +M +G+ P I+HY C+VDL RAG L+EA+ FIM +PI P+ ++W +LL
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
C VH +V L E+ + L +L P +V LSNIYA A RW DV VRK
Sbjct: 422 GGCKVHKNVKLAEEATRHLSKLDP--------LNDGYYVVLSNIYAEAGRWEDVARVRKL 473
Query: 456 MK 457
M+
Sbjct: 474 MR 475
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 254/456 (55%), Gaps = 26/456 (5%)
Query: 21 PSHIKQIHAQLITNALK--SP-PLYAQLIQLYCTKKASPQSTKIV-HFVFTHFDPPNLFL 76
P Q+HA L+ L SP + + L S ++ ++ H + T P+ F
Sbjct: 49 PRRFIQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHYLPSTFQ 108
Query: 77 FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
N+++R L F V + FT L CSL+ RQ+H +V
Sbjct: 109 CNSILRALSDPSDALRFLCRVRALGRRGNAFTLAILLKP---RCSLAH---ARQLHANVV 162
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
G + + L+AT+L+ YA+ D +K+FD+MP+R + WN +I Y +++++ KD
Sbjct: 163 AEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCY-ARNRRTKD-- 219
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL LF +M S +P D T + +L S LG L+FG V Y E+ Y E + +
Sbjct: 220 --ALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGE--LKV 275
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
+L+ MY +CGC+D A +FS +K+V+TWTAM +G+A +G GN+AI + + M V
Sbjct: 276 RNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDV 335
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ TFT + +AC H+GLV+EG FD M+ ++G++P+++HY CIVDL+GRAG L+EAY
Sbjct: 336 APDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAY 395
Query: 377 NFIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
F+ + + PDA +WR+LL AC +HG V LGE+V L++L+ + + D+V
Sbjct: 396 EFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQ--------QAGDYVL 447
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L N YA+ W V +RK M+ + ++T PG + ++
Sbjct: 448 LLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVE 483
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 238/438 (54%), Gaps = 50/438 (11%)
Query: 72 PNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+++L+N +I+ T P+ S+ ++ GL D +++ FAL + RF S+ T
Sbjct: 40 PDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRP-DSYSFPFALKAVTRFSSIQT-- 96
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD--ISSGKKVFDQMPMRSS--ATWNAMI 182
GRQ+H + G ++ V T + Y+S I +K+FD M M + A WNAM+
Sbjct: 97 -GRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAML 155
Query: 183 NGYCSQSK--KAKDC------------------------AFNALVLFRDMLVDVSGVKPT 216
NGY A+D +A+ LFR M + V+P
Sbjct: 156 NGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRM--QLENVEPD 213
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
+ M+ L+ ++LG LE G + Y+++ + N + + AL+DMY+K G + +AL +
Sbjct: 214 EIAMLVALTACARLGALELGEWIRHYIDRLGLLTTN-IPLNNALIDMYAKSGDIKSALQV 272
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F M K ++TWT M G+A+HG G EA+ + M VKPN +TF ++ +AC H GLV
Sbjct: 273 FENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLV 332
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
+ G F+ M S++G+EP I+HY C++DLLGRAGHL+EA + +P +P+A++W SLL+
Sbjct: 333 QTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLA 392
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
ACN HGD LGE + LL+L+P+ S ++ LSNIYAS RW + VRK M
Sbjct: 393 ACNTHGDPELGELALQHLLELEPD--------NSGNYALLSNIYASRGRWNESRVVRKVM 444
Query: 457 KVKRVETEPGSSILQTTT 474
V+ PG S+++
Sbjct: 445 WDAGVKKMPGGSLIEVNN 462
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 254/457 (55%), Gaps = 28/457 (6%)
Query: 21 PSHIKQIHAQLITNALK--SP-PLYAQLIQLYCTKKASPQSTKIV--HFVFTHFDPPNLF 75
P Q+HA L+ L SP + + L S ++ ++ H H+ P+ F
Sbjct: 35 PRRFIQLHAHLLRTGLLIFSPVTTTSAFLSLAAVSLPSHRALAVLDHHLTTPHY-LPSTF 93
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
N+++R L F V + FT L CSL+ RQ+H +V
Sbjct: 94 QCNSILRALSDPSDALRFLCRVRALGRRGNAFTLAILLKP---RCSLAH---ARQLHANV 147
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
G + + L+AT+L+ YA+ D +K+FD+MP+R + WN +I Y +++++ KD
Sbjct: 148 VAEGHLRDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCY-ARNRRTKD- 205
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL LF +M S +P D T + +L S LG L+FG V Y E+ Y E +
Sbjct: 206 ---ALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGE--LK 260
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ +L+ MY +CGC+D A +FS +K+V+TWTAM +G+A +G GN+AI + + M
Sbjct: 261 VRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSD 320
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
V P+ TFT + +AC H+GLV+EG FD M+ ++G++P+++HY CIVDL+GRAG L+EA
Sbjct: 321 VAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA 380
Query: 376 YNFIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
Y F+ + + PDA +WR+LL AC +HG V LGE+V L++L+ + + D+V
Sbjct: 381 YEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQ--------QAGDYV 432
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L N YA+ W V +RK M+ + ++T PG + ++
Sbjct: 433 LLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVE 469
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 265/475 (55%), Gaps = 45/475 (9%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP------ 72
T S + QIHA ++ L++ PL ++ + + ++ S +H+ + PP
Sbjct: 29 NTLSKLTQIHAFILKTGLQNNPL---ILTKFTSTSSNLNS---IHYATSFLFPPSHTTST 82
Query: 73 -----NLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+ FLFNTLIR +S L + + G+ T + FT+ F L CA +
Sbjct: 83 PTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGV-TPNKFTFPFVLKGCA---GI 138
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNA 180
+L LG+ +H V K GF +V V TLIH Y +KVFD P + TW+A
Sbjct: 139 GSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSA 198
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI G+ C+ A+ LFR+M V GV P + TMV VLS + LG LE G V
Sbjct: 199 MIAGFVRLG-----CSSRAVDLFREM--QVMGVCPDEITMVSVLSACADLGALELGKWVE 251
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+EK +P++ V + AL+DM++KCG +D A+ +F +M + +++WT++ G+A+HG+
Sbjct: 252 SYVEKK-NIPKS-VELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGR 309
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A+ L D M + G+ P+ V F + +AC H+GLV++G + F +M+ + + P ++HY
Sbjct: 310 GLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYG 369
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLL R G ++EA+ F+ +P +P+ I+WR++++AC+ G++ LGE + K L++ +P
Sbjct: 370 CMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEP- 428
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
++V LSNIYA +W VR+ M ++ ++ PGS++++
Sbjct: 429 -------MHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNE 476
>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Vitis vinifera]
Length = 540
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/412 (38%), Positives = 235/412 (57%), Gaps = 23/412 (5%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDS-VLVFAYWVSKGL--LTFDDFTYVFALGSCARF 119
H +F+ PNLF++NT+IR DS + A + L ++ + +T+ F L +C
Sbjct: 21 HCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNAC--- 77
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
C L L G+++H + K G F + LI YA+ + +FD+MP SA+W+
Sbjct: 78 CKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWS 137
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
M++GY + A L L R+M + V T+ V+ V LG+L+ G V
Sbjct: 138 TMVSGYSQNGQ-----AVETLKLLREMQAE--NVSSDAFTLASVVGVCGDLGVLDLGKWV 190
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H Y++K + DV +GTALV MYSKCG LDNAL +F M E++V TW+ M G AIHG
Sbjct: 191 HSYIDKEGV--KIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHG 248
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+A++L D+M+ + PN VTFTS+ +A H+GLVE+G +F+ M +++ + P IKHY
Sbjct: 249 HDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHY 308
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDL RAG + A+ FI +PI+P+ +LWR+LL AC HG LGE + + +L+L P
Sbjct: 309 GCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDP 368
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ E++V +SN+YAS RW V VR MK K + + G S ++
Sbjct: 369 S--------SPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIE 412
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 164/467 (35%), Positives = 251/467 (53%), Gaps = 26/467 (5%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
+L + + + QI A I + + +LI +CT+ + S +F
Sbjct: 35 ILLISKCNSERELMQIQAYAIKSHQEDVSFNTKLIN-FCTESPTESSMSYARHLFDAMSE 93
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P++ +FN++ R T P + +F + LL D++T+ L +CA +L
Sbjct: 94 PDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLP-DNYTFPSLLKACAVAKALEE--- 149
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GRQ+H K G NV V TLI+ Y +D+ + + VFD++ +NAMI GY
Sbjct: 150 GRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYAR 209
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+++ + AL LFR+M +KP + T++ VLS + LG L+ G +H Y +K
Sbjct: 210 RNRPNE-----ALSLFREM--QGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHG 262
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ V + TAL+DM++KCG LD+A+ IF MR K+ W+AM A HG+ ++ +
Sbjct: 263 FCKY--VKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLM 320
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ MR V+P+ +TF L AC H GLVEEG F M ++G+ P IKHY +VDLLG
Sbjct: 321 FERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLG 380
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAGHLE+AY FI +PI P +LWR LL+AC+ H ++ L EKV + +L+L
Sbjct: 381 RAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDS------- 433
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
D+V LSN+YA ++W V+S+RK MK ++ PG S ++
Sbjct: 434 -HGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNN 479
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 168/491 (34%), Positives = 250/491 (50%), Gaps = 67/491 (13%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
TT KQIH L L + P + + L C S +F HF P+ F++N
Sbjct: 21 TTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYSLRLFHHFPNPDTFMYN 80
Query: 79 TLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR-FCSLSTLWLGRQIHV 133
TLIR + P S+ F + L D F++ F L A CS G Q+H
Sbjct: 81 TLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQ---GIQLHS 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING--------- 184
H + GF ++ V TTLI YA +KVFD+M + WNA++
Sbjct: 138 HAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRV 197
Query: 185 -----------YCSQSKK------------AKDCAF-NALVLFRDMLVDVSGVKPTDTTM 220
+C + AK +F +A F+++L D + +P++ ++
Sbjct: 198 LGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRN--RPSEVSL 255
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VLS +Q G EFG +HG+MEK ++ V + AL+D YSKCG +D A L+F+
Sbjct: 256 TGVLSACAQAGAFEFGKILHGFMEKAGFLC--IVSVNNALIDTYSKCGNVDMAKLVFN-- 311
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+A+HG+ +EAIR+ M + GV+P+ VTF SL AC H+GLVE+G
Sbjct: 312 ------------ISLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGC 359
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
LF M++ +G+EP I+HY C+VDL GRA L++AY FI +PI P+ I+WR+LL AC++
Sbjct: 360 ALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSI 419
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HG++ L E V L ++ P S D V LSN+YA A +W DV +R+ M +
Sbjct: 420 HGNIELAELVKARLAEMDPN--------NSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQS 471
Query: 461 VETEPGSSILQ 471
++ PG S+++
Sbjct: 472 MKKIPGWSMIE 482
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 229/391 (58%), Gaps = 22/391 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D++ +F SKG+ D +T + +CA CS S+L GR +H +V K G N+ V
Sbjct: 655 DAIGLFDEMQSKGVRP-DIYTVTSIVHACA--CS-SSLDKGRDVHSYVIKNGMGSNLPVT 710
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI+ YA + + VF ++P++ +WN MI GY S + AL LF DM
Sbjct: 711 NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNE-----ALELFLDMQ 765
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
KP D TM CVL + L L+ G +HG++ + Y +D+ + ALVDMY+KC
Sbjct: 766 ---KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF--SDLHVACALVDMYAKC 820
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A L+F + +K++++WT M G +HG GNEAI + MR G++P+ +F+ +
Sbjct: 821 GLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVIL 880
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL+ EG F++M+++ GVEP ++HY+C+VDLL R G+L +AY FI +PIKPD
Sbjct: 881 NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD 940
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W LLS C +H DV L EKV + + +L+P+ T +V L+N+YA AE+W
Sbjct: 941 TTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNT--------RYYVVLANVYAEAEKWE 992
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +RK+M+ + + PG S ++ + +
Sbjct: 993 EVKKLRKRMQKRGFKQNPGCSWIEVGGKFNI 1023
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/407 (26%), Positives = 195/407 (47%), Gaps = 27/407 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K++H+ +I+N + L A+L+ +Y Q KI F +FL+N L+
Sbjct: 389 KRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKI----FDKIMNDKVFLWNLLMSE 444
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ ++SV +F G++ + +T+ L C F +L + +++H +V K G
Sbjct: 445 YAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVL-KC--FAALGKVKECKRVHGYVLKLG 500
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F N V +LI Y + S +FD++ +WN+MING N
Sbjct: 501 FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG-----NG 555
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L +F ML+ GV+ TT+V VL + +G L G +HG+ K + E V
Sbjct: 556 LEIFIQMLI--LGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEE--VVFSNT 611
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMYSKCG L+ A +F +M + +++WT+ G ++AI L D M+ GV+P+
Sbjct: 612 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD 671
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
T TS+ AC + +++G + + K G+ ++ + ++++ + G +EEA
Sbjct: 672 IYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
IP+K D + W +++ + +L + ++ L +Q + D+
Sbjct: 731 SKIPVK-DIVSWNTMIGG---YSQNSLPNEALELFLDMQKQFKPDDI 773
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 19/271 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
+Y L CA SL G+++H + G + + L+ Y + D+ G+K+F
Sbjct: 371 SYCSVLQLCAEKKSLED---GKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIF 427
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSV 226
D++ WN +++ Y AK F V LF+ M GV T CVL
Sbjct: 428 DKIMNDKVFLWNLLMSEY------AKIGNFRESVSLFKKM--QKLGVVGNCYTFTCVLKC 479
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ LG ++ VHGY+ K + V +L+ Y K G +++A +F + E +V+
Sbjct: 480 FAALGKVKECKRVHGYVLKLGFGSNTAVV--NSLIAAYFKFGGVESAHNLFDELSEPDVV 537
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD 344
+W +M G ++G + + M GV+ + T S+ A + G + G LH F
Sbjct: 538 SWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGF- 596
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+K+ + E + + ++D+ + G+L A
Sbjct: 597 GVKACFSEE--VVFSNTLLDMYSKCGNLNGA 625
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 5/187 (2%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D +G LV MY CG L IF ++ V W + + A G E++ L M+
Sbjct: 403 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 462
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
GV N TFT + G V+E + + K G + + ++ + G +
Sbjct: 463 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVL-KLGFGSNTAVVNSLIAAYFKFGGV 521
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432
E A+N + +PD + W S+++ C V+G G ++ +L L E VD+
Sbjct: 522 ESAHNLFDELS-EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE---VDLTTLVSV 577
Query: 433 FVALSNI 439
VA +NI
Sbjct: 578 LVAWANI 584
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 174/491 (35%), Positives = 255/491 (51%), Gaps = 64/491 (13%)
Query: 23 HIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
H+ QIHA L+ L P L +L + Y + S + H PN+FL+ +I
Sbjct: 38 HLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPN----PNVFLWTHII 93
Query: 82 RCTPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
D +F + +S +LT F L S + C TL R +H H K G
Sbjct: 94 NAHAHFD---LFHHALSYYSQMLTHPIQPNAFTLSSLLKAC---TLHPARAVHSHAIKFG 147
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT---------------------- 177
++ V+T L+ YA D++S +K+FD MP RS +
Sbjct: 148 LSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFE 207
Query: 178 ---------WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-----GVKPTDTTMVCV 223
WN MI+GY C ALV FR M++ + V+P + T+V V
Sbjct: 208 GMGMKDVVCWNVMIDGYAQHG-----CPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAV 262
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS Q+G LE G VH Y+E + +V +GTALVDMY KCG L++A +F M K
Sbjct: 263 LSSCGQVGALECGKWVHSYVENNGI--KVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK 320
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+ W +M G IHG +EA++L M GVKP+ +TF ++ AC HAGLV +G +F
Sbjct: 321 DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVF 380
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D+MK +G+EP ++HY C+V+LLGRAG ++EAY+ + + ++PD +LW +LL AC +H +
Sbjct: 381 DSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSN 440
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V+LGE++ +IL+ + +S +V LSN+YA+A W V VR MK VE
Sbjct: 441 VSLGEEIAEILVS--------NGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEK 492
Query: 464 EPGSSILQTTT 474
EPG S ++
Sbjct: 493 EPGCSSIEVKN 503
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 170/497 (34%), Positives = 264/497 (53%), Gaps = 58/497 (11%)
Query: 12 LLKLKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L L T S IKQI L ++ LK P A++I +C ++ S + +F
Sbjct: 14 LFLLDKCRTISQIKQIQTHLTVSGTLKDPYAAAKIIS-FCALSSNQFSLSHAYRLFLGLR 72
Query: 71 PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
+ F++NT+IR P+ ++++F + L +++TY F +C L+ L+
Sbjct: 73 HRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLP-NNYTYSFLFKACT---DLNNLY 128
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYA---------------SNKDISS--------- 162
LG H K G+ F V L+H +A SN+D+ +
Sbjct: 129 LGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYV 188
Query: 163 -------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
G+++FD+MP R+S +W+AMI GY + AL LF ML+ SG P
Sbjct: 189 RAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEE-----ALELFNAMLI--SGFWP 241
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
+VC ++ + LG L+ G +H Y+++ + D +G AL+DMY+KCGC++ A
Sbjct: 242 NHAGIVCAINACASLGALDQGRWIHCYIKRN--RMDLDRVMGAALIDMYAKCGCIEIACS 299
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
IF +R ++V +T + +G+A HG+ A+ L + M GV PN VTF S+ AC GL
Sbjct: 300 IFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGL 359
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++GL +F+NM +G EP ++HY C+VDLLGRAG LEEA + +P+KPD+ + +LL
Sbjct: 360 VDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALL 419
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
+A V+GDV LGE+ + L QL + + V V LSN+YASA +W +V VR+
Sbjct: 420 NASRVYGDVELGEETVESLAQLSLDHSGVH--------VVLSNMYASANKWDEVARVRRG 471
Query: 456 MKVKRVETEPGSSILQT 472
M K+V PG S+++
Sbjct: 472 MGDKKVRKVPGCSLIKV 488
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 254/493 (51%), Gaps = 57/493 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L++ +H+ IHA++I +LI++ T S + VF++ PN
Sbjct: 36 LRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCST----LDSVDYAYDVFSYVSNPN 91
Query: 74 LFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++L+ +I D V ++ + +L D++ L +C L + R
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLP-DNYVITSVLKAC-------DLKVCR 143
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-- 187
+IH V K GF + V ++ Y + ++ + KK+FD+MP R MIN Y
Sbjct: 144 EIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG 203
Query: 188 ---------QSKKAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCV 223
Q K KD AL LFR+M ++ V + T VCV
Sbjct: 204 FIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQME--NVSANEFTAVCV 261
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS S LG LE G VH ++E N F+G AL++MYS+CG ++ A +F MR+K
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSN--FVGNALINMYSRCGDINEARRVFRVMRDK 319
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+++ M +G+A+HG EAI M + G +PN VT +L AC H GL++ GL +F
Sbjct: 320 DVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVF 379
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++MK + VEP I+HY CIVDLLGR G LEEAY FI IPI+PD I+ +LLSAC +HG+
Sbjct: 380 NSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGN 439
Query: 404 VALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+ LGEK+ K L + + P+ S +V LSN+YAS+ +W + +R+ M+ +E
Sbjct: 440 MELGEKIAKRLFESENPD---------SGTYVLLSNLYASSGKWKESTEIRESMRDSGIE 490
Query: 463 TEPGSSILQTTTH 475
EPG S ++
Sbjct: 491 KEPGCSTIEVDNQ 503
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 267/490 (54%), Gaps = 48/490 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS-PQSTKIVHF---VFTHFD 70
L++ ++ S +K IH L+ L S A + C ++ + T ++ + +F+
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78
Query: 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PNLF+FN LIRC + + F ++ K + D+ T+ F + + + + + +
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE---MECVLV 135
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q H + + GF +V V +L+H YA+ I++ ++F QM R +W +M+ GYC
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCK 195
Query: 188 --------------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+C A+ LF M + GV +T MV
Sbjct: 196 CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKRE--GVVANETVMV 253
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V+S + LG LEFG + Y+ K+ +M N + +GTALVDM+ +CG ++ A+ +F +
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKS-HMTVN-LILGTALVDMFWRCGDIEKAIHVFEGLP 311
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
E + L+W+++ G+A+HG ++A+ M G P VTFT++ +AC H GLVE+GL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+++NMK G+EP ++HY CIVD+LGRAG L EA NFI+ + +KP+A + +LL AC ++
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIY 431
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ + E+VG +L++++PE S +V LSNIYA A +W +ES+R MK K V
Sbjct: 432 KNTEVAERVGNMLIKVKPE--------HSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 462 ETEPGSSILQ 471
+ PG S+++
Sbjct: 484 KKPPGWSLIE 493
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 167/496 (33%), Positives = 254/496 (51%), Gaps = 54/496 (10%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVH 63
P R + L+ + I I+A++I N P +L+++ + ++KI
Sbjct: 29 PNRRRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKI-- 86
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF---------DDFTYVFALG 114
F+H PN++L+ LI D +++ Y+ L + D + L
Sbjct: 87 --FSHTQNPNVYLYTALI------DGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLK 138
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+C C L+ L GR++H V K G N + LI Y ++VFD+MP R
Sbjct: 139 ACG--CHLA-LKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195
Query: 175 SATWNAMINGYCSQSKKAKDC-------------AFNALVLFRDMLVDVSGVKPTDTTMV 221
MIN Y K C + AL +FR+M + V P + T+V
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRE--DVMPNEVTIV 253
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
CVLS S+LG L+ G V YM+K + E + F+G AL++MYS+CG +D A +F +M+
Sbjct: 254 CVLSACSELGALQLGRWVRSYMDK--HRIELNHFVGGALINMYSRCGDIDEAQRVFEQMK 311
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
EKNV+T+ +M G A+HGK EA+ L + G P++VTF + AC H GL E G
Sbjct: 312 EKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFE 371
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+F +M +G+EP I+HY C+VDLLGR G LEEAY+FI + + PD ++ +LLSAC +H
Sbjct: 372 IFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIH 431
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSED---FVALSNIYASAERWPDVESVRKQMKV 458
G++ L E+V K L VAC + D ++ LSN Y+S+ +W + VR M+
Sbjct: 432 GNLELAERVAKSL-----------VACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMRE 480
Query: 459 KRVETEPGSSILQTTT 474
+ +E EPG S ++
Sbjct: 481 EGIEKEPGCSSIEVNN 496
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 244/457 (53%), Gaps = 29/457 (6%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
+P HI QI AQLI L S A + T S +FTH P++F+ N+
Sbjct: 23 SPCHIHQIQAQLIVQNLHSNTTIAHH---FITACQSLGLLDSALLLFTHHSKPHVFICNS 79
Query: 80 LIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
LIR P ++ + S +L ++FT+ F L S A F LS G+ IH HV
Sbjct: 80 LIRAFSHNHTPHTPFSIYTHMHSNSILP-NNFTFPFLLKSLADFKGLSE---GQCIHTHV 135
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ V +L++ YAS D+ +VFD+MP R +W +I GY S +
Sbjct: 136 VKLGQFDDIYVQNSLLNVYASCGDMGLCMRVFDEMPHRDVVSWTVLITGYRSAERYD--- 192
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
+AL+ F M +GV P TMV LS + G LE G +H ++ ++ + E DV
Sbjct: 193 --DALIAFEQM--QYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSGW--EFDVI 246
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+GT+L+DMY KCG ++ L++F M+EKNV TW ++ G+A+ G EA+ M G
Sbjct: 247 LGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFYRMEQEG 306
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
+K + VT ++ AC H+G+V+ G +F + M K+ P +KHY+C++DLL RAG L+E
Sbjct: 307 IKADEVTLIAVLCACSHSGMVQMGRQIFGSLMNGKYEFFPGVKHYACVIDLLARAGILQE 366
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A + +P +P+ ++W + L+ C HGD+ L E + L++L+P +V
Sbjct: 367 AMEVMTRMPFEPNKVMWGAFLAGCRAHGDLELSEFAARKLVELEPG--------NGAYYV 418
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA RW DVE VR+ MK + + G S ++
Sbjct: 419 LLSNIYAEMGRWSDVEKVRRLMKEGGLTKDLGCSSIE 455
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 232/391 (59%), Gaps = 22/391 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D++ +F SKG+ D +T + +CA CS S+L GR +H +V K G N+ V
Sbjct: 380 DAIGLFDEMQSKGVRP-DIYTVTSIVHACA--CS-SSLDKGRDVHSYVIKNGMGSNLPVT 435
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI+ YA + + VF ++P++ +WN MI GY SQ+ + AL LF DM
Sbjct: 436 NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY-SQNLLPNE----ALELFLDMQ 490
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
KP D TM CVL + L L+ G +HG++ + Y +D+ + ALVDMY+KC
Sbjct: 491 ---KQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF--SDLHVACALVDMYAKC 545
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A L+F + +K++++WT M G +HG GNEAI + MR G++P+ +F+++
Sbjct: 546 GLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAIL 605
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL+ EG F++M+++ GVEP ++HY+C+VDLL R G+L +AY FI +PIKPD
Sbjct: 606 NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPD 665
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W LLS C +H DV L EKV + + +L+P+ T +V L+N+YA AE+W
Sbjct: 666 TTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNT--------RYYVVLANVYAEAEKWE 717
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +RK+M+ + + PG S ++ + +
Sbjct: 718 EVKKLRKRMQKRGFKQNPGCSWIEVGGKFNI 748
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 184/378 (48%), Gaps = 24/378 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K++H+ +I+N + L A+L+ +Y Q KI F +FL+N L+
Sbjct: 114 KRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKI----FDKIMNDKVFLWNLLMSE 169
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ ++SV +F G++ + +T+ L C F +L + +++H +V K G
Sbjct: 170 YAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVL-KC--FAALGKVKECKRVHGYVLKLG 225
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F N V +LI Y + S +FD++ +WN+MING N
Sbjct: 226 FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG-----NG 280
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L +F ML+ GV+ TT+V VL + +G L G +HG+ K + E V
Sbjct: 281 LEIFIQMLI--LGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE--VVFSNT 336
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMYSKCG L+ A +F +M + +++WT++ G ++AI L D M+ GV+P+
Sbjct: 337 LLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD 396
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
T TS+ AC + +++G + + K G+ ++ + ++++ + G +EEA
Sbjct: 397 IYTVTSIVHACACSSSLDKGRDVHSYV-IKNGMGSNLPVTNALINMYAKCGSVEEARLVF 455
Query: 380 MGIPIKPDAILWRSLLSA 397
IP+K D + W +++
Sbjct: 456 SKIPVK-DIVSWNTMIGG 472
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 20/293 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
+Y L CA SL G+++H + G + + L+ Y + D+ G+K+F
Sbjct: 96 SYCSVLQLCAEKKSLED---GKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIF 152
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSV 226
D++ WN +++ Y AK F V LF+ M GV T CVL
Sbjct: 153 DKIMNDKVFLWNLLMSEY------AKIGNFRESVSLFKKM--QKLGVVGNCYTFTCVLKC 204
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ LG ++ VHGY+ K + V +L+ Y K G +++A +F + E +V+
Sbjct: 205 FAALGKVKECKRVHGYVLKLGFGSNTAVV--NSLIAAYFKFGGVESAHNLFDELSEPDVV 262
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD 344
+W +M G ++G + + M GV+ + T S+ AC + G + G LH F
Sbjct: 263 SWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGF- 321
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+K+ + E + + ++D+ + G+L A + + + W S+++A
Sbjct: 322 GVKACFSEE--VVFSNTLLDMYSKCGNLNGATEVFVKMG-DTTIVSWTSIIAA 371
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 5/187 (2%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D +G LV MY CG L IF ++ V W + + A G E++ L M+
Sbjct: 128 DEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQ 187
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
GV N TFT + G V+E + + K G + + ++ + G +
Sbjct: 188 KLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVL-KLGFGSNTAVVNSLIAAYFKFGGV 246
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432
E A+N + +PD + W S+++ C V+G G ++ +L L E VD+
Sbjct: 247 ESAHNLFDELS-EPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE---VDLTTLVSV 302
Query: 433 FVALSNI 439
VA +NI
Sbjct: 303 LVACANI 309
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 167/518 (32%), Positives = 260/518 (50%), Gaps = 85/518 (16%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T+ S + Q HA ++ + L A + + + Q+ H +F+ PN +++N
Sbjct: 18 TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWN 77
Query: 79 TLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI--HV 133
T+IR +P ++ L + + + D +T+ FAL SC F + GRQI HV
Sbjct: 78 TIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEE---GRQIHGHV 134
Query: 134 -----------------------------HVTKRGFMFNVLVATTLIHFYA--------- 155
H+ R +V+ L+ YA
Sbjct: 135 LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELAC 194
Query: 156 ------SNKDISS----------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ +++ S ++VF + P+++ +WNAMI GY + ++
Sbjct: 195 HLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSE 254
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
LVLF DM +GVKP + T+V VLS + +G L G VH Y++K D
Sbjct: 255 -----VLVLFEDM--QHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGI--SID 305
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F+ TALVDMYSKCG ++ AL +F+ K++ TW ++ +G++ HG G A+++ M
Sbjct: 306 GFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLV 365
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
G KPN VTF + +AC AGL++EG +F+ M G++P I+HY C+VDLLGR G LE
Sbjct: 366 EGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLE 425
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA + +P K +++W SLL AC HG+V L E+V + LL+L P+ S F
Sbjct: 426 EAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQ--------ESSSF 477
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSN+YAS RW DV VR++M+ + V +PG S+++
Sbjct: 478 VQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIE 515
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 266/466 (57%), Gaps = 30/466 (6%)
Query: 13 LKLKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L+ ++ S IKQ+ A LI N +L++L C + + +H +F +
Sbjct: 6 LLLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLEL-CAISSFGDLSYALH-IFRYIPY 63
Query: 72 PNLFLFNTLIRCTP----PQDSVLVF-AYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+ +N +IR T P ++V + A S GL D T FAL +CAR + S
Sbjct: 64 PSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSE-- 121
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q+H + + GF +VL+ TTL+ YA D+ +K+FD+MP A+WNA+I G+
Sbjct: 122 -AIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFA 180
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
S+ A +A++ F+ M VD ++P T+ L SQLG L+ G VH Y+ +
Sbjct: 181 QGSRPA-----DAIMTFKRMKVD-GNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEE 234
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAI 305
+++V + ++DMY+KCG +D A +F MR +K+++TW M A+HG G++A+
Sbjct: 235 --KLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKAL 292
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L + + G+ P+AV++ ++ AC HAGLVE+GL LF++M + G+EP+IKHY +VDL
Sbjct: 293 DLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQR-GLEPNIKHYGSMVDL 351
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG L+EAY+ + +P P+ +LW++LL AC +GDV + E + L+ E+ F+
Sbjct: 352 LGRAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLV----EMGFIS 406
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
FV LSN+YA+ +RW DV VR M+ + V+ PG S ++
Sbjct: 407 CG----XFVLLSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIE 448
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 253/504 (50%), Gaps = 72/504 (14%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYC-TKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T + QIHA I + L A I +C T + H +F N F +N
Sbjct: 35 TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94
Query: 79 TLIRCTPPQD------SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
T+IR D ++ +F +S + + FT+ L +CA+ + G+QIH
Sbjct: 95 TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE---GKQIH 151
Query: 133 VHVTKRGFMFNVLVATTLIHFYAS----------------NKDI---------------- 160
K GF + V + L+ Y KD+
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 161 -------------SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+ + +FD+M RS +WN MI+GY S + KD A+ +FR+M
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY-SLNGFFKD----AVEVFREM- 265
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
++P T+V VL S+LG LE G +H Y E + D +G+AL+DMYSKC
Sbjct: 266 -KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI--RIDDVLGSALIDMYSKC 322
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A+ +F R+ +NV+TW+AM G AIHG+ +AI MR GV+P+ V + +L
Sbjct: 323 GIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 382
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLVEEG F M S G+EP I+HY C+VDLLGR+G L+EA FI+ +PIKPD
Sbjct: 383 TACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
++W++LL AC + G+V +G++V IL+ + P S +VALSN+YAS W
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMDMVPH--------DSGAYVALSNMYASQGNWS 494
Query: 448 DVESVRKQMKVKRVETEPGSSILQ 471
+V +R +MK K + +PG S++
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLID 518
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/490 (33%), Positives = 250/490 (51%), Gaps = 45/490 (9%)
Query: 3 SLPGHRCFALLKL--------------KAITTPSHIK---QIHAQLITNALK-SPPLYAQ 44
+L ++C+ +KL A T P ++ ++H ++ L+ P +
Sbjct: 178 NLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTS 237
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGL 101
L+ +Y A +F N+ + LI Q D L + +
Sbjct: 238 LVGMY----AKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE 293
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ + TY L C +L G+++H ++ + G+ + V LI Y +
Sbjct: 294 VAPNKITYTSILQGCTTPLALEH---GKKVHRYIIQSGYGREIWVVNALITMYCKCGGLK 350
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+K+F +P R TW AM+ GY + A+ LFR M G+KP T
Sbjct: 351 EARKLFGDLPHRDVVTWTAMVTGYAQLGFHDE-----AIDLFRRM--QQQGIKPDKMTFT 403
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
L+ S L+ G +H + Y DV++ +ALV MY+KCG +D+A L+F++M
Sbjct: 404 SALTSCSSPAFLQEGKSIHQQLVHAGY--SLDVYLQSALVSMYAKCGSMDDARLVFNQMS 461
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
E+NV+ WTAM TG A HG+ EA+ + M+ G+KP+ VTFTS+ +AC H GLVEEG
Sbjct: 462 ERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRK 521
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F +M +G++P ++HYSC VDLLGRAGHLEEA N I+ +P +P +W +LLSAC +H
Sbjct: 522 HFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIH 581
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
DV GE+ + +L+L P+ +VALSNIYA+A R+ D E VR+ M+ + V
Sbjct: 582 SDVERGERAAENVLKLDPD--------DDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDV 633
Query: 462 ETEPGSSILQ 471
EPG S ++
Sbjct: 634 VKEPGQSWIE 643
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 147/287 (51%), Gaps = 18/287 (6%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L CAR SL GR++H + K G N + TL+ YA ++ ++VFD +
Sbjct: 103 LQECARLRSLEQ---GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRD 159
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R+ +W AMI + + ++ A + M ++G KP T V +L+ + L
Sbjct: 160 RNIVSWTAMIEAFVAGNQN-----LEAYKCYETM--KLAGCKPDKVTFVSLLNAFTNPEL 212
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L+ G VH ME E + +GT+LV MY+KCG + A +IF ++ EKNV+TWT +
Sbjct: 213 LQVGQKVH--MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLI 270
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKW 350
G A G+ + A+ LL+ M+ V PN +T+TS+ C +E G +H + ++S +
Sbjct: 271 AGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRY-IIQSGY 329
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G E + + ++ + + G L+EA +P + D + W ++++
Sbjct: 330 GREIWV--VNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAMVTG 373
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 24/290 (8%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS------SATW 178
LW R + + MFN + F + +S DQ+P + +
Sbjct: 10 LWNSRVTQLRCGRSILMFNRYQSNVDTAFELTTPTVS-----HDQLPGNAGFRKVDTLAN 64
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
+ ++ C Q + + AL + M++ G + +L ++L LE G
Sbjct: 65 SGDVSILCKQGRLKE-----ALGILNTMIL--QGTRVYSDVFRGLLQECARLRSLEQGRE 117
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VH + K+ P ++ L+ MY+KCG L +A +F +R++N+++WTAM
Sbjct: 118 VHAAILKSGIQPNR--YLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAG 175
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+ EA + ++M+ G KP+ VTF SL A + L++ G + + +K G+E +
Sbjct: 176 NQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEI-AKAGLELEPRV 234
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVAL 406
+ +V + + G + +A +P K + + W L++ G DVAL
Sbjct: 235 GTSLVGMYAKCGDISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVAL 283
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 253/469 (53%), Gaps = 37/469 (7%)
Query: 18 ITTPSHIKQ---IHAQLITNALKSPPLYAQLIQLYCTK-KASPQSTKIVHFVFTHFDPPN 73
+ HI Q IHAQLI N P + C+K A +++I F +TH PN
Sbjct: 39 LQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI--FQYTH--NPN 94
Query: 74 LFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++L+ LI D++ +++ + +L D++ L +C S L GR
Sbjct: 95 VYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILP-DNYLMASILKACG---SQLALREGR 150
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP----MRSSATWNAMINGY 185
++H K G N LV ++ Y ++ ++VF++MP + + W AMI+G+
Sbjct: 151 EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGF 210
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+ + AL FR M + V+P + T+VCVLS SQLG LE G VH YM K
Sbjct: 211 VRNEEMNR-----ALEAFRGMQGE--NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 263
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ E ++F+G AL++MYS+CG +D A +F M++++V+T+ M +G++++GK +AI
Sbjct: 264 --FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAI 321
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L M ++P VTF + AC H GLV+ G +F +M +GVEP I+HY C+VDL
Sbjct: 322 ELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDL 381
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGR G LEEAY+ I + + PD I+ +LLSAC +H ++ LGE+V K+L
Sbjct: 382 LGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG------- 434
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
S +V LS++YAS+ +W + VR +MK ++ EPG S ++
Sbjct: 435 -QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 482
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 234/402 (58%), Gaps = 28/402 (6%)
Query: 77 FNTLIRCTPPQDS--VLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+N LIR +DS + AY + L ++ D T+ L +CA ++S GR+I V
Sbjct: 728 WNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACA---AISAFNEGRKIQV 784
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
V K G NV V T+IHFY S K I +++FD+M R+ +WNA+++ C ++
Sbjct: 785 DVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSA-CVDNEWLN 843
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPEN 252
D +F V R SG P +TTMV +LS S+LG L FG VH +EK +
Sbjct: 844 D-SFGLFVKMRG-----SGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVV--- 894
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ +GTALVDMY+KCG + A L+F RM E+NV TW+AM G+A HG EA+ L M+
Sbjct: 895 NCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFPKMK 954
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
+ PN VTF + AC HAGLV++G F +M+ G+EP + HY +VD+L RAG L
Sbjct: 955 QSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAMVDILSRAGRL 1014
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHG---DVALGEKVGKILLQLQPEVTFVDVACT 429
+EAYNFI+ +P++ D ++WR+LLSAC +HG + +G+KV K LL+L+P
Sbjct: 1015 KEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEPR--------R 1066
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +FV ++N+YA +W +VR+ MK ++ G S ++
Sbjct: 1067 SGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIE 1108
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
S G L++A ++ S + V +W + A EAI MR G+ P+ +TF
Sbjct: 705 SPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFP 764
Query: 325 SLFAACCHAGLVEEGLHL-FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
L AC EG + D MK G++ ++ + ++ G + +A +
Sbjct: 765 ILLKACAAISAFNEGRKIQVDVMKH--GLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMS 822
Query: 384 IKPDAILWRSLLSAC 398
+ + W ++LSAC
Sbjct: 823 YRT-VVSWNAVLSAC 836
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 243/459 (52%), Gaps = 38/459 (8%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
TT +KQI A I TN + + + I +CT + S + H +F PN+ LF
Sbjct: 37 TTLKELKQIQAYTIKTNYQNNTNVITKFIN-FCTSNPTKASMEHAHQLFDQITQPNIVLF 95
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDD-FTYVFALGSCARFCS-LSTLWLGRQIHVHV 135
NT+ R G +D + C R S + L G+Q+H
Sbjct: 96 NTMAR-----------------GYARLNDPLRMITHFRRCLRLVSKVKALAEGKQLHCFA 138
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G N+ V TLI+ Y + DI + ++VFD++ +NA+I ++
Sbjct: 139 VKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNR----- 193
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A AL LFR++ G+KPTD TM+ VLS + LG L+ G +H Y++K Y + V
Sbjct: 194 ANEALALFREL--QEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK--YGFDRYVK 249
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ T L+DMY+KCG LD+A+ +F M +++ W+A+ A HG G +AI +L+ M+
Sbjct: 250 VNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEK 309
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
V+P+ +TF + AC H GLVEEG F M +++G+ P IKHY C+VDLLGRAG L+EA
Sbjct: 310 VQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEA 369
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +PIKP ILWR+LLSAC+ HG+V +G++V + + +L D+V
Sbjct: 370 YKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDS--------HGGDYVI 421
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
SN+ A +W DV +RK M K PG S ++
Sbjct: 422 FSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNN 460
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 246/455 (54%), Gaps = 33/455 (7%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST-KIVHFVFTHFD-PPNLFLFNTLI 81
+ +HA LI NA PL + L C +SP T + V F P + F +N +I
Sbjct: 12 VYNLHATLIKNAQHDNPLSLRTFILRCANSSSPPDTARYAAAVLLRFPIPGDPFPYNAVI 71
Query: 82 RCTP---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA--RFCSLSTLWLGRQIHVHVT 136
R P ++ +F++ + + + FD FT+ L S C IH V
Sbjct: 72 RHVALHAPSLALALFSH-MHRTNVPFDHFTFPLILKSSKLNPHC----------IHTLVL 120
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K GF N+ V LI+ Y ++ + + K+FD+MP R +W+++I+ C + D
Sbjct: 121 KLGFHSNIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLIS--CFAKRGLPD-- 176
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL LF+ M + S + P M+ V+S S LG LE G VH ++ + V +
Sbjct: 177 -EALTLFQQMQLKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGV--NLTVSL 233
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
G+AL+DMYS+CG +D ++ +F M +NV+TWTA+ G+A+HG+G EA+ M + G+
Sbjct: 234 GSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGL 293
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KP+ + F + AC H GLVEEG +F +M S++G+EP ++HY C+VDLLGRAG + EA+
Sbjct: 294 KPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAF 353
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+F+ G+ ++P++++WR+LL AC H + L EK + + +L P D+V L
Sbjct: 354 DFVEGMRVRPNSVIWRTLLGACVNHNLLVLAEKAKERIKELDPH--------HDGDYVLL 405
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SN Y W E VR M+ ++ EPG S++
Sbjct: 406 SNAYGGVGNWVKKEGVRNSMRESKIVKEPGLSLVH 440
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 252/467 (53%), Gaps = 27/467 (5%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
F+LL K T+ +KQIHAQ+I +A A + +C S + + F +
Sbjct: 29 FSLLADKC-TSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRL-FNNT 86
Query: 70 DPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
PN F++NTLIR P +++L++ ++ T+ F L +C+ F SL +
Sbjct: 87 QEPNSFMWNTLIRAHASSLNPSEALLLYVDMRRLDVIP-GKHTFPFLLKACSNFQSLQSC 145
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
Q+H HV K G N+ V L+ Y+ + D+ + ++VFD++ RS + W MI+GY
Sbjct: 146 I---QVHTHVLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGY 202
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
C+ AL LF M+V+ G++P T+ VLS +Q G L+ G +H +ME+
Sbjct: 203 AQNY-----CSNEALELFDQMIVE--GLEPNGATLASVLSACAQSGCLDLGERIHVFMEE 255
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
E V +GTALV MY+K G + A +F + E+N TW AM G+A+HG EA+
Sbjct: 256 KGI--EVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEAL 313
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ + PN +TF + +ACCHAGL+ G +F MK +G+EP I+HY C+VDL
Sbjct: 314 DRFWKLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDL 373
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGR G L EA I G+ K D ++ +LL +C HG++ + E+V K +L L+P V
Sbjct: 374 LGRGGELLEAEELIKGMAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEPHNHGV- 432
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V LSN+YA A RW DV +RK MK ++ PG S++ +
Sbjct: 433 -------YVVLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVDS 472
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 250/451 (55%), Gaps = 28/451 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+Q+HA ++ + KS LIQ+Y A+ + VF ++ +N+++
Sbjct: 141 EQVHALILKSGFKSNEFVENTLIQMY----ANCGQIGVARHVFDGMPERSIVAWNSMLSG 196
Query: 84 TPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
D V+ + + + FDD T + L +C R L+ L +G I ++ +G
Sbjct: 197 YTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGR---LANLEIGELIGEYIVSKGL 253
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
N + T+LI YA + + +K+FD+M R W+AMI+GY +Q+ + K+ AL
Sbjct: 254 RRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGY-AQADRCKE----AL 308
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LF +M V P + TMV VL + LG E G VH Y++K + V +GT L
Sbjct: 309 NLFHEM--QKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK--KMKLTVTLGTQL 364
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+D Y+KCG +D ++ +F M KNV TWTA+ G+A +G+G A+ SM + VKPN
Sbjct: 365 IDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPND 424
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF + +AC HA LV++G HLF++M+ + +EP I+HY C+VD+LGRAG LEEAY FI
Sbjct: 425 VTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFID 484
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P P+A++WR+LL++C H ++ + EK + + +L+P S D++ LSN Y
Sbjct: 485 NMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEP--------AHSGDYILLSNTY 536
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A R D VR +K K ++ PG S+++
Sbjct: 537 ALVGRVEDAIRVRSLIKEKEIKKIPGCSLIE 567
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 212/449 (47%), Gaps = 28/449 (6%)
Query: 13 LKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L L+ TP ++Q+HA L+ P+ + + L P + +F H D P
Sbjct: 26 LILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAV-LESAALLLPDTIDYALSIFNHIDKP 84
Query: 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+N +IR P +++L+F K + D FT+ L +C+R + L G
Sbjct: 85 ESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSV-QHDKFTFSSVLKACSR---MKALREG 140
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
Q+H + K GF N V TLI YA+ I + VFD MP RS WN+M++GY
Sbjct: 141 EQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGY--- 197
Query: 189 SKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
K+ ++ +V LFR +L ++ D TM+ VL +L LE G + Y+
Sbjct: 198 ---TKNGLWDEVVKLFRKIL--ELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKG 252
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
N + T+L+DMY+KCG +D A +F M +++V+ W+AM +G A + EA+ L
Sbjct: 253 LRRNNT--LTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNL 310
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M+ V PN VT S+ +C G E G + +K K ++ + + ++D
Sbjct: 311 FHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKK-KMKLTVTLGTQLIDFYA 369
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFV 424
+ G+++ + + K + W +L+ A N G +AL + ++P +VTF+
Sbjct: 370 KCGYIDRSVEVFKEMSFK-NVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFI 428
Query: 425 DV--ACTSEDFVALS-NIYASAERWPDVE 450
V AC+ V +++ S R D+E
Sbjct: 429 GVLSACSHACLVDQGRHLFNSMRRDFDIE 457
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 253/492 (51%), Gaps = 53/492 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T +H+ QIHA + + L S + + + + + P +T I F H PN
Sbjct: 16 LHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTI----FNHTHHPN 71
Query: 74 LFLFNTLIRCT---PP-QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ LFN++I+ PP S F + D+FT+ L + + L LG+
Sbjct: 72 ILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSY---LRDYDLGQ 128
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ- 188
+H HVT GF + V L+ Y++ + KVFD+M R WN MING+C
Sbjct: 129 CLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMG 188
Query: 189 ---------------------------SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+++ KD A +FR+ML G +P D T+V
Sbjct: 189 DLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDG--EAFGIFREMLE--QGFEPDDATLV 244
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
VL V ++LG ++ G +H Y + + + +G +LVD Y KCG L+ A +F+ M
Sbjct: 245 TVLPVCARLGDVDAGEWIHSYADGKGLL-RKVISVGNSLVDFYCKCGNLEAAWKVFNEMT 303
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+KNV++W AM +G+ ++GKG + L + M GV P+ TF + A C HAG V++G
Sbjct: 304 KKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGRE 363
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+FD+M K+ + P ++HY C+VDLLGR GH++EAY+ I +P+ P+A LW +LLSAC H
Sbjct: 364 IFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRTH 423
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GD + E K L++L+P S ++V LSN+YA +W +VE VR M+ +
Sbjct: 424 GDREVAEIAAKELVRLEP--------GNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGI 475
Query: 462 ETEPGSSILQTT 473
+ PG S LQ +
Sbjct: 476 KKNPGQSALQDS 487
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/496 (33%), Positives = 254/496 (51%), Gaps = 54/496 (10%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+KQIHA+++ L C S VF FD P+ FL+N +I
Sbjct: 57 EELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116
Query: 82 R---CT-PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R C+ P+ S+L++ + + +T+ L +C+ +LS L QIH +TK
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSA-PHNAYTFPSLLKACS---NLSALEETTQIHAQITK 172
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G+ +V +LI+ YA+ + +FD++P + +WN++I GY K
Sbjct: 173 LGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDI---- 228
Query: 198 NALVLFRDML-----------------------------VDVSGVKPTDTTMVCVLSVSS 228
AL LFR M+ + S V+P + ++ LS +
Sbjct: 229 -ALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACA 287
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
QLG LE G +H Y+ KT D +G L+DMY+KCG + AL +F ++ K+V W
Sbjct: 288 QLGALEQGKWIHSYLTKTRI--RMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAW 345
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
TA+ +G A HG G EAI M+ G+KPN +TFT++ AC + GLVEEG +F NM+
Sbjct: 346 TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMER 405
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ ++P I+HY C+VDLL RAG L+EA FI +P+KP+A++W +LL AC +H ++ LGE
Sbjct: 406 DYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE 465
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
++G+IL+ + P +V +NI+A ++W R+ MK + V PG S
Sbjct: 466 EIGEILIAIDPY--------HGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCS 517
Query: 469 I--LQTTTHYTLDGFR 482
L+ TTH L G R
Sbjct: 518 TISLEGTTHEFLAGDR 533
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 263/500 (52%), Gaps = 49/500 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ T +KQIHA+++ + L P YA + + +S S+ F FD P+
Sbjct: 18 LQKCPTEVELKQIHARMLKSGLLQDP-YA-MTKFLSFCLSSSFSSYAHDVFFNGFDRPDT 75
Query: 75 FLFNTLIR---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
FL+N +IR C+ D L+ + + + +T+ F L +C+ +LS QI
Sbjct: 76 FLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACS---NLSAFQETTQI 132
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK- 190
H H+TK G+ ++ +LI+ YA + +FD++ + +WN++I GY +
Sbjct: 133 HAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEM 192
Query: 191 ----------KAKDCAFN----------------ALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ A + AL LF +M S V P + ++ L
Sbjct: 193 DMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEM--QNSNVPPDNVSLASAL 250
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S SQLG LE G +H Y KT D + L+DMY+KCG ++ AL +F M+ K+
Sbjct: 251 SACSQLGALEQGKWIHSYANKT--RTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKS 308
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V WTA+ +G A HG G EAI M++ GVKPNA+TFT++ AC + GLVEEG +F+
Sbjct: 309 VQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFN 368
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
++ + ++P I+HY C+VDLLGRAG L EA FI +P+KP+A++W SLL AC +H ++
Sbjct: 369 TIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNI 428
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGEK+G+IL+++ +V ++NI+A ++W R+ M+ + V
Sbjct: 429 ELGEKIGEILIEMDSN--------HGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKV 480
Query: 465 PGSSI--LQTTTHYTLDGFR 482
PG S L+ TTH L G R
Sbjct: 481 PGCSAISLEGTTHEFLAGDR 500
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 229/417 (54%), Gaps = 27/417 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L +N++I + ++V +F + G ++ + V LG+C
Sbjct: 184 VFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP-NEMSLVSVLGACGE-- 240
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LG + V + N + + LIH Y D+ S +++FD M + TWNA
Sbjct: 241 -LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY + A+ LF+DM +S P T++ +LS + +G L+ G V
Sbjct: 300 MITGYAQNGMSEE-----AIKLFQDM--RMSSTAPDQITLIGILSACASIGALDLGKQVE 352
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y + + ++DV++GTALVDMY+KCG LDNA +F M +KN ++W AM + +A HG+
Sbjct: 353 IYASERGF--QDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQ 410
Query: 301 GNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA+ L SM + G V PN +TF + +AC HAGLV+EG LF M S +G+ P I+H
Sbjct: 411 AQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEH 470
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VDL RAGHLEEA++F+M +P KPD ++ +LL AC ++ + E+V K+LL+L+
Sbjct: 471 YSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELE 530
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
P S ++V S +YA+ RW D +R MK K V PG S + +
Sbjct: 531 P--------SNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQ 579
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQIHAQL+TN++ P + LY K A + F++ P
Sbjct: 39 LQQCLSIKQLKQIHAQLLTNSIHKPNSF-----LY--KIADLKDFAYASVFFSNILDPTE 91
Query: 75 FLFNTLIR--CTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQ 130
+ FN +IR T S L ++ L ++ TY F +C+ ++ GR
Sbjct: 92 YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVEN---GRM 148
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H V +RG + V+ +LI YA + +KVFD++ + +WN+MI+GY S+ +
Sbjct: 149 GHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGY-SKMR 207
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYM 249
A + A+ LFR+M+ +G +P + ++V VL +LG L+ G V + +E +
Sbjct: 208 HAGE----AVGLFREMM--EAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ F+G+AL+ MY KCG L +A IF M++K+ +TW AM TG A +G EAI+L
Sbjct: 262 ---NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ 318
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
MR P+ +T + +AC G ++ G + + S+ G + + + +VD+ +
Sbjct: 319 DMRMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERGFQDDVYVGTALVDMYAKC 377
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ----LQP-EVTFV 424
G L+ A+ G+P K + + W +++SA HG + K ++ + P ++TFV
Sbjct: 378 GSLDNAFRVFYGMP-KKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFV 436
Query: 425 DV--ACTSEDFV 434
V AC V
Sbjct: 437 GVLSACVHAGLV 448
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 233/403 (57%), Gaps = 28/403 (6%)
Query: 77 FNTLIRCTPPQDS--VLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+N LIR +DS + AY + L ++ D T+ L +CA + + GR+I V
Sbjct: 87 WNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNE---GRKIQV 143
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
V K G NV V T+IHFY S K I +++FD+M R+ +WNA+++ C ++
Sbjct: 144 DVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSA-CVDNEWLN 202
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPEN 252
D +F V R SG P +TTMV +LS S+LG L FG VH +EK +
Sbjct: 203 D-SFGLFVKMRG-----SGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVV--- 253
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ +GTALVDMY+KCG + A L+F RM E+NV TW+AM G+A HG EA+ L M+
Sbjct: 254 NCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFPKMK 313
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
+ PN VTF + AC HAGLV++G F +M+ G+EP + HY +VD+L RAG L
Sbjct: 314 QSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMMIHYGAMVDILSRAGRL 373
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHG---DVALGEKVGKILLQLQPEVTFVDVACT 429
+EAYNFI+ +P++ D ++WR+LLSAC +HG + +G+KV K LL+L+P
Sbjct: 374 KEAYNFILNMPVEADPVVWRTLLSACTIHGINDNDGVGDKVRKRLLELEPR--------R 425
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
S +FV ++N+YA +W +VR+ MK ++ G S ++
Sbjct: 426 SGNFVMVANMYAEVGKWDKAANVRRTMKDTGLKKMAGESCIEV 468
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
S G L++A ++ S + V +W + A EAI MR G+ P+ +TF
Sbjct: 64 SPLGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFP 123
Query: 325 SLFAACCHAGLVEEGLHL-FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
L AC EG + D MK G++ ++ + ++ G + +A +
Sbjct: 124 ILLKACAXISAFNEGRKIQVDVMKH--GLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMS 181
Query: 384 IKPDAILWRSLLSAC 398
+ + W ++LSAC
Sbjct: 182 YRT-VVSWNAVLSAC 195
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/467 (34%), Positives = 244/467 (52%), Gaps = 57/467 (12%)
Query: 40 PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAY 95
P A I +C S S VF P F N++IR P+ ++L +
Sbjct: 10 PFSASKIVAFCALHDS-GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68
Query: 96 WVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
+ +GL D FT+ SC C G+Q+H H TK GF + + TL++ Y+
Sbjct: 69 MMLQGL-DPDRFTFPSLFKSCGVLCE------GKQLHCHSTKLGFASDAYIQNTLMNMYS 121
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV------- 208
+ + S +KVFD+M +S +W MI Y D A+ LFR M +
Sbjct: 122 NCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW-----DLPHEAIKLFRRMEIASNLFCW 176
Query: 209 -----------------------DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+SGVK TM +L + LG LE G +H Y+EK
Sbjct: 177 NIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK 236
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
E DV +GTALVDMY+KCG +++A+ +F M EK+V+TWTA+ G+A+ G+G +A+
Sbjct: 237 EKI--EVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKAL 294
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L M+ VKP+A+TF + AAC HAGLV EG+ F++M +K+G++P I+HY C+VD+
Sbjct: 295 ELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDM 354
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG + EA + I +P+ PD + LLSAC +HG++ + E+ + L++L P+
Sbjct: 355 LGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK----- 409
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V LSNIY+S + W + +R+ M + ++ PG S ++
Sbjct: 410 ---NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 453
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/458 (35%), Positives = 247/458 (53%), Gaps = 26/458 (5%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T+ +KQIHAQ+I +A A + +C S + + F + PN F++N
Sbjct: 39 TSMHQLKQIHAQMIVSARIHDNYAASRLLSFCALSESGDLSYALRL-FNNTQEPNSFMWN 97
Query: 79 TLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
TLIR P +++L++ ++ T+ F L +C+ F SL + Q+H H
Sbjct: 98 TLIRAHASSLNPSEALLLYVDMRRLDVIP-GKHTFPFLLKACSNFQSLQSCI---QVHTH 153
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
V K G N+ V L+ Y+ + D+ + ++VFD++ RS + W MI+GY
Sbjct: 154 VLKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNY----- 208
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
C+ AL LF M+V+ G++P T+ VLS +Q G L+ G +H +ME+ E V
Sbjct: 209 CSNEALELFDQMIVE--GLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGI--EVGV 264
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+GTALV MY+K G + A +F + E+N TW AM G+A+HG EA+ +
Sbjct: 265 ILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFWKLEKE 324
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
+ PN +TF + +ACCHAGL+ G +F MK +G+EP I+HY C+VDLLGR G L E
Sbjct: 325 QIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCMVDLLGRGGELLE 384
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I G+ K D ++ +LL +C HG++ + E+V K +L L+P V +V
Sbjct: 385 AEELIKGMAWKADVVILGALLGSCKNHGNIEIAERVVKEILVLEPHNHGV--------YV 436
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
LSN+YA A RW DV +RK MK ++ PG S++ +
Sbjct: 437 VLSNMYAEAGRWEDVLRLRKVMKSGNLKKTPGWSLVDS 474
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/413 (35%), Positives = 240/413 (58%), Gaps = 26/413 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+FT D P+ F +NT+IR ++++L++ + +G+ D FTY F L +C+
Sbjct: 54 IFTQIDEPSSFDYNTMIRGNVNDMKLEEALLLYVDMIERGVEP-DKFTYPFVLKACSL-- 110
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L + G Q+H HV K G +V+V +LI+ Y +I + VF+ M +S A+W+A
Sbjct: 111 -LGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSA 169
Query: 181 MINGY-CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+I + C + +N ++ + + ++T+V VLS + LG + G C+
Sbjct: 170 IIGAHACVE-------MWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCI 222
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG + + + E +V + T+L+DMY K GCL+ L +F M EKN ++T M +G+AIHG
Sbjct: 223 HGILLRN--ISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHG 280
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+G EA+++ M + G+ P+ V + +F+AC HAGLVEEGL F +M+ + +EP ++HY
Sbjct: 281 RGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQCFKSMQFEHKIEPTVQHY 340
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLLGR G L+EAY I + IKP+ ++WRSLLSAC VH ++ +G+ + L L
Sbjct: 341 GCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLLSACKVHHNLEIGKIAAENLFMLNQ 400
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
S D++ L+N+YA A++W DV +R ++ + + PG S+++
Sbjct: 401 N--------NSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQTPGFSLIEA 445
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 55/320 (17%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQMPMRSSATWNAMINGYC 186
+Q+H HV K G F+ + L+ A K + +F Q+ SS +N MI G
Sbjct: 15 KQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMIRGNV 74
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ K + AL+L+ DM+ GV+P T VL S LG+++ G VHG++ K
Sbjct: 75 NDMKLEE-----ALLLYVDMI--ERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKM 127
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
E DV + +L++MY KCG + NA +F+ M EK+V +W+A+ A NE +
Sbjct: 128 GL--EGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLM 185
Query: 307 LLDSMRDCG-VKPNAVTFTSLFAACCH--------------------------------- 332
LL M G + T ++ +AC H
Sbjct: 186 LLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMY 245
Query: 333 --AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPD 387
+G +E+GL +F NM E + Y+ ++ L G +EA ++ ++ + PD
Sbjct: 246 VKSGCLEKGLRVFKNMS-----EKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPD 300
Query: 388 AILWRSLLSACNVHGDVALG 407
+++ + SAC+ G V G
Sbjct: 301 DVVYVGVFSACSHAGLVEEG 320
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 250/469 (53%), Gaps = 35/469 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK +K+IHA ++ +L + C T+ + +F PN
Sbjct: 66 LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGE---TEYANLLFKGVADPNA 122
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTF---------DDFTYVFALGSCARFCSLSTL 125
FL+N +IR + V V A V K +L D FT+ F + SCA L
Sbjct: 123 FLYNAMIRAYK-HNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA---GLMCY 178
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA--TWNAMIN 183
LG+Q+H HV K G N +V +L+ Y + +VF++M R + +W A+++
Sbjct: 179 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVS 238
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY C +AL FR M + G++P + ++V VL +QLG LE G +H Y
Sbjct: 239 GYARIG-----CYADALEFFRRM--QMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYA 291
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+K ++ ++ + AL++MY+KCG +D +F +M+E++V++W+ M G+A HG+ E
Sbjct: 292 DKAGFL--RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRARE 349
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
AI L M+ ++P+ +TF L AC HAGL+ EGL F++MK + +EP ++HY C+V
Sbjct: 350 AIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLV 409
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
+LLG +G L++A + +P KPD+ +W SLLS+C HG++ + + LL+L+P T
Sbjct: 410 NLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADT- 468
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++V LSN+YA +W V +RK M+ K ++ PG S ++
Sbjct: 469 -------GNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEV 510
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 248/485 (51%), Gaps = 49/485 (10%)
Query: 19 TTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
TT +H KQ+HA + N L +S + L++ T P T H +F+ PN FL+
Sbjct: 22 TTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHT-YPHLLFSQVHSPNPFLY 80
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+ LIR P S+ ++ ++ + ++ F+ A F L LG Q+H+
Sbjct: 81 SALIRAYARNGPFHHSIRLYTSMLNNNV---SPVSFTFS----ALFSLLKNPSLGSQLHL 133
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
H GF+ ++ V T+IH Y + +KVFD+MP R TW +I Y
Sbjct: 134 HAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDS 193
Query: 194 DCAF--------------------------NALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
C AL FR M +GV + T+V +S
Sbjct: 194 ACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKM--REAGVVTDEITLVGAISAC 251
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+QLG+ + + E + + ++VF+G+AL+DMYSKCG ++ A +F M+E NV +
Sbjct: 252 AQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFS 311
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+++M G A+HG+ AI+L M + G+KPN VTF LF AC HAG+VE+G LF MK
Sbjct: 312 YSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMK 371
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+GV P HY+C+ DLLGRAGHLE+A + +P++P+ +W +LL A ++HG+ +
Sbjct: 372 ECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVA 431
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
E + L +L+P+ +++ LS YA A +W DV VRK M+ K++ PG
Sbjct: 432 EIASRSLFELEPD--------NLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGC 483
Query: 468 SILQT 472
S ++
Sbjct: 484 SWVEA 488
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 221/371 (59%), Gaps = 24/371 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY----ASNKDI 160
+ FTY F L +CA + L LG+ +H V K GF V V TL+H Y I
Sbjct: 9 NKFTYPFVLKACA---GIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGI 65
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+KVFD+M S +W+AMI GY + + +A+ LFR+M + GV P + TM
Sbjct: 66 EFARKVFDEMYKSDSVSWSAMIGGYVRVGRSS-----DAINLFREM--QIKGVCPDEITM 118
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V VLS + LG LE G V Y+EK + +V + AL+DM++KCG +D A +F M
Sbjct: 119 VSVLSACTGLGALELGKWVESYVEKERV--QKNVELSNALIDMFAKCGDVDKATNLFRSM 176
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
RE+N+++WT++ G+A+HG+G EA+ + + M GV P+ V F L +AC H+GLV++G
Sbjct: 177 RERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGK 236
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
FD+M+ + + P I+HY C+VD+L RAG ++EA F+ +PI P+ ++WR+L++AC
Sbjct: 237 RYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRA 296
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HG++ LGEK+ + L++ +P ++V LSNIYA W +R+ M +K
Sbjct: 297 HGELKLGEKITRQLIRNEP--------MHESNYVLLSNIYAKMSDWEKKTRIREAMDMKG 348
Query: 461 VETEPGSSILQ 471
++ PGS++++
Sbjct: 349 MKKIPGSTMIE 359
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/417 (36%), Positives = 228/417 (54%), Gaps = 27/417 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L +N++I + ++V +F + G ++ + V LG+C
Sbjct: 184 VFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQP-NEMSLVSVLGACGE-- 240
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LG + V + N + + LIH Y D+ S +++FD M + TWNA
Sbjct: 241 -LGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNA 299
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY + A+ LF+DM +S P T++ +LS + +G L+ G V
Sbjct: 300 MITGYAQNGMSEE-----AIKLFQDM--RMSSTAPDQITLIGILSACASIGALDLGKQVE 352
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y + + ++DV++GTALVDMY+KCG LDNA +F M KN ++W AM + +A HG+
Sbjct: 353 IYASERGF--QDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQ 410
Query: 301 GNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA+ L SM + G V PN +TF + +AC HAGLV+EG LF M S +G+ P I+H
Sbjct: 411 AQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEH 470
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VDL RAGHLEEA++F+M +P KPD ++ +LL AC ++ + E+V K+LL+L+
Sbjct: 471 YSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELE 530
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
P S ++V S +YA+ RW D +R MK K V PG S + +
Sbjct: 531 P--------SNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQ 579
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 127/432 (29%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQIHAQL+TN++ P + LY K A + F++ P
Sbjct: 39 LQQCLSIKQLKQIHAQLLTNSIHKPNSF-----LY--KIADLKDFAYASVFFSNILDPTE 91
Query: 75 FLFNTLIR--CTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQ 130
+ FN +IR T S L ++ L ++ TY F +C+ ++ GR
Sbjct: 92 YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVEN---GRM 148
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H V +RG + V+ +LI YA + +KVFD++ + +WN+MI+GY S+ +
Sbjct: 149 GHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGY-SKMR 207
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYM 249
A + A+ LFR+M+ +G +P + ++V VL +LG L+ G V + +E +
Sbjct: 208 HAGE----AVGLFREMM--EAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ F+G+AL+ MY KCG L +A IF M++K+ +TW AM TG A +G EAI+L
Sbjct: 262 ---NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ 318
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
MR P+ +T + +AC G ++ G + + S+ G + + + +VD+ +
Sbjct: 319 DMRMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERGFQDDVYVGTALVDMYAKC 377
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ----LQP-EVTFV 424
G L+ A+ G+P K + + W +++SA HG + K ++ + P ++TFV
Sbjct: 378 GSLDNAFRVFYGMPNK-NEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFV 436
Query: 425 DV--ACTSEDFV 434
V AC V
Sbjct: 437 GVLSACVHAGLV 448
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/344 (40%), Positives = 210/344 (61%), Gaps = 17/344 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G ++H + GF V V TL+H YA+ S K+F+ M R+ TWN++INGY
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYAL 73
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + AL LFR+M + GV+P TMV +LS ++LG L G H YM K
Sbjct: 74 NGRPNE-----ALTLFREM--GLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 126
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ ++ G AL+D+Y+KCG + A +F M EK+V++WT++ G+A++G G EA+ L
Sbjct: 127 L--DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 184
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ G+ P+ +TF + AC H G+V+EG F MK ++G+ P I+HY C+VDLLG
Sbjct: 185 FKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLG 244
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG +++A+ FI +P++P+A++WR+LL AC +HG +ALGE LLQL+P+
Sbjct: 245 RAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPK------- 297
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YAS +RW DV VR+ M + V+ PG S+++
Sbjct: 298 -HSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVE 340
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 34/287 (11%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+++H+ I N +S ++ Q L+ +Y A+ + H +F NL +N++I
Sbjct: 15 EKVHSIAIRNGFESL-VFVQNTLVHMY----AACGHAESAHKLFELMAERNLVTWNSVIN 69
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
P +++ +F +G+ D FT V L +CA L L LGR+ HV++ K
Sbjct: 70 GYALNGRPNEALTLFREMGLRGVEP-DGFTMVSLLSACAE---LGALALGRRAHVYMVKV 125
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI-----NGYCSQSKKAK 193
G N+ L+ YA I KVFD+M +S +W ++I NG+ +
Sbjct: 126 GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE----- 180
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF+++ + G+ P++ T V VL S G+++ G M++ + +
Sbjct: 181 -----ALELFKEL--ERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKI 233
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHG 299
G +VD+ + G + A M + N + W + IHG
Sbjct: 234 EHYG-CMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 279
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 256/491 (52%), Gaps = 50/491 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS-PQSTKIVHFVFTHFDPPN 73
L+ + + + K+IHA +I + L + C K +T++ F PN
Sbjct: 17 LQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRL----FNQVSNPN 72
Query: 74 LFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+FL+N++IR D + ++ + K + D FT+ F SCA SL + +LG+
Sbjct: 73 VFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCA---SLGSCYLGK 129
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--S 187
Q+H H+ K G F+V+ LI Y D+ KVFD+M R +WN++++GY
Sbjct: 130 QVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLG 189
Query: 188 QSKKAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
Q KKAK C A+ FR+M ++G++P + +++ V
Sbjct: 190 QMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIEPDEISLISV 247
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + LG LE G +H Y E+ + + V AL++MYSKCG L A+ +F + + K
Sbjct: 248 LPSCAHLGSLELGKWIHMYAERRGLLKQTGV--CNALIEMYSKCGMLSQAIQLFEQTKGK 305
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V++W+ M +G A HG + A M+ VKPN +TF L +AC H GL ++GL F
Sbjct: 306 DVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYF 365
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D M+ + +EP I+HY C++D+L RAG LE A +P+KPD+ +W SLLS+C G+
Sbjct: 366 DMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGN 425
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ + L++++P+ D+ ++V L+NIYA +W DV +RK ++ + ++
Sbjct: 426 LDVALVAMDHLVEVEPD----DMG----NYVLLANIYADLGKWEDVSRLRKIIRKENMKK 477
Query: 464 EPGSSILQTTT 474
PG S+++
Sbjct: 478 TPGCSLIEVNN 488
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 164/479 (34%), Positives = 252/479 (52%), Gaps = 47/479 (9%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
HRC +L + +KQIHAQ++ L Q +L Q T V+ VF
Sbjct: 25 HRCSSL---------NQVKQIHAQVLKANLHRESFVGQ--KLIAAFSLCRQMTLAVN-VF 72
Query: 67 THFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
P++ L+NTLIR + P + VF G+ D+FTY F L +C+
Sbjct: 73 NQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCA-DNFTYPFLLKACS----- 126
Query: 123 STLWLG--RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+W+ IH V K GF ++ V +LI Y ++ +++FD+MP R + +WN
Sbjct: 127 GKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNT 186
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVD--------VSGVKPTDTTMVCVLSVSSQLGL 232
+++GY + + AF LF M +G+K D T++ +LS + GL
Sbjct: 187 ILDGYVKAGEM--NAAFE---LFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGL 241
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L G VH +E+T + V AL+DMY+KCG L+NAL IF M K+V++W A+
Sbjct: 242 LGLGKRVHASIERTRFKCSTPV--SNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAII 299
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G+A+HG G +A++L M+ G P+ VTF + AC HAG V+EGLH F M+ +GV
Sbjct: 300 QGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGV 359
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
P ++HY C+VDLLGR G L+EA+ + +P++P+AI+W +LL AC +H L E+V
Sbjct: 360 PPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFD 419
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L++ + S + LSNIYA+A W + ++R +MK ++ G S ++
Sbjct: 420 RLVKSE--------LSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIE 470
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 253/486 (52%), Gaps = 53/486 (10%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
K+ H QLI N L PP + I + S + + PP +FLFNT IR
Sbjct: 3 QFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIR 62
Query: 83 ----CTPPQD---SVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQIHV 133
P SVL+F V G+L+ ++FT+ F C+ + LGRQ H
Sbjct: 63 GFSRARRPGSLLSSVLLF---VRMGVLSLAPNNFTFTFLFQGCSNCVAFD---LGRQFHG 116
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING--------- 184
V K F +V V ++I FY+ ++ + VFD+ +WN+MI+G
Sbjct: 117 MVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILE 176
Query: 185 ---YCSQSKKAKDCAFN--------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
S+ + D ++N AL LFR+M + +P +V VLS
Sbjct: 177 ALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREM--QMLDQEPNSAILVSVLSAC 234
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
SQLG L+ G VH Y+ K D + AL+DMY+KCG +D A+ FS R+++V
Sbjct: 235 SQLGALDHGCWVHCYIGKK--CVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSA 292
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+TA +G+A++G EA++L + M+ G+ P+ V++ ++ AC HAG VE+G H F +M
Sbjct: 293 YTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMS 352
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
G+ P + HY+C+VDLLGRAG LEEA F+ +PIKPD ++W +LL AC V+G+ +G
Sbjct: 353 DVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMG 412
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
++VG +L++ ++ LSNIYA + + D E VRK M+ ++V+ PG
Sbjct: 413 QRVGSLLVESDQN--------HDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGC 464
Query: 468 SILQTT 473
S+++
Sbjct: 465 SLIEVA 470
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 255/493 (51%), Gaps = 54/493 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK +K+IHA ++ +L + C T+ + +F PN
Sbjct: 21 LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGE---TEYANLLFKGVADPNA 77
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTF---------DDFTYVFALGSCARFCSLSTL 125
FL+N +IR + V V A V K +L D FT+ F + SCA L
Sbjct: 78 FLYNAMIRAYK-HNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCA---GLMCY 133
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LG+Q+H HV K G N +V +L+ Y + +VF++M R + +WN +I+G+
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGH 193
Query: 186 C--SQSKKAK------------------------DCAFNALVLFRDMLVDVSGVKPTDTT 219
Q ++A+ C +AL FR M + G++P + +
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRM--QMVGIEPDEIS 251
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+V VL +QLG LE G +H Y +K ++ ++ + AL++MY+KCG +D +F +
Sbjct: 252 LVSVLPDCAQLGALELGKWIHIYADKAGFL--RNICVCNALIEMYAKCGSIDQGRRLFDQ 309
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M+E++V++W+ M G+A HG+ EAI L M+ ++P+ +TF L AC HAGL+ EG
Sbjct: 310 MKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEG 369
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
L F++MK + +EP ++HY C+V+LLG +G L++A + +P KPD+ +W SLLS+C
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCR 429
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
HG++ + + LL+L+P T ++V LSN+YA +W V +RK M+ K
Sbjct: 430 SHGNLKIAVIAMEHLLELEPADT--------GNYVLLSNLYADLGKWDGVSRMRKLMRSK 481
Query: 460 RVETEPGSSILQT 472
++ PG S ++
Sbjct: 482 SMKKTPGCSSIEV 494
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 248/462 (53%), Gaps = 27/462 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T+ +KQI A I L++ + +LI CT+ + S H +F P+
Sbjct: 33 LPKCTSLKELKQIQAFSIKTHLQNDLQILTKLIN-SCTQNPTTASMDYAHQLFEAIPQPD 91
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ LFN++ R P ++ +F ++ LL DD+T+ L +C G+
Sbjct: 92 IVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLP-DDYTFPSLLKACV---VAKAFQQGK 147
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
Q+H K G N V TLI+ YA D+ ++VFD++ ++NA+I GY S
Sbjct: 148 QLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSS 207
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + AL LFR + +KP D T++ VLS + LG L+ G +H Y++K
Sbjct: 208 RPNE-----ALSLFRQL--QARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGL- 259
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ V + TAL+DMY+KCG LD A+ +F M ++ W+AM A+HG+G + + + +
Sbjct: 260 -DKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFE 318
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M V+P+ +TF L AC H GLV+EG F +M +G+ P IKHY C+VDLLGRA
Sbjct: 319 EMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRA 378
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G L EAY FI +PIKP ILWR+LLS+C+ HG++ L ++V +L+L
Sbjct: 379 GLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDS--------H 430
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V LSN+ A A +W DV+++RK M K PG S ++
Sbjct: 431 GGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIE 472
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 214/385 (55%), Gaps = 36/385 (9%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T + + SCA+ L L LGR+ H ++ + G V +A L+ Y ++ S +
Sbjct: 179 DEVTMIGVVSSCAQ---LEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESAR 235
Query: 165 KVFD----------------QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
K+FD +MP + WNAMI GY ++ + AL LF +M
Sbjct: 236 KLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKE-----ALALFNEM-- 288
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
+ P + TMV LS SQLG L+ G +H Y+EK + +V +GTAL+DMY+KCG
Sbjct: 289 QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK--HELSLNVALGTALIDMYAKCG 346
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+ A+ +F + +N LTWTA+ +G+A+HG + AI M D V P+ VTF L +
Sbjct: 347 KITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLS 406
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
ACCH GLVEEG F M SK+ + P +KHYSC+VDLLGRAG LEEA I +PI+ DA
Sbjct: 407 ACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADA 466
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
++W +L AC +HG+V +GE+ LLQ+ P + + +V L+N+Y AE W +
Sbjct: 467 VVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGI--------YVLLANMYGEAEMWKE 518
Query: 449 VESVRKQMKVKRVETEPGSSILQTT 473
RK M+ + VE PG S ++
Sbjct: 519 AGKXRKLMRQRGVEKTPGCSSIEVN 543
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/352 (28%), Positives = 179/352 (50%), Gaps = 34/352 (9%)
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PN F +N IR P+++V+++ + D++TY +CAR LS + +
Sbjct: 41 PNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACAR---LSLIRM 97
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G +I HV GF ++ V+ +IH S D+ +K+FD+ +R +WN+MINGY
Sbjct: 98 GSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVR 157
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A+ AL +R+M V G+KP + TM+ V+S +QL L+ G H Y+E+
Sbjct: 158 -----RGWAYEALNFYREM--KVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENG 210
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNA----------------LLIFSRMREKNVLTWTAM 291
+ V + AL+DMY KCG L++A ++F M +K+V+ W AM
Sbjct: 211 L--KLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAM 268
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G +G EA+ L + M+ + P+ VT S +AC G ++ G+ + ++ K
Sbjct: 269 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIE-KHE 327
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ ++ + ++D+ + G + +A +P + +++ W +++S +HG+
Sbjct: 328 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGN 378
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 34/174 (19%)
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFA 328
LD I R N +W G EA+ L + C G KP+ T+ LF
Sbjct: 28 LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87
Query: 329 ACCHAGLVEEG-------LHL-FDN-----------MKSKWGVEPHIKHY--SCIVDLLG 367
AC L+ G LHL FD+ + S ++ K + SC+ DL+
Sbjct: 88 ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147
Query: 368 ---------RAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGEK 409
R G EA NF + IKPD + ++S+C D+ LG +
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 201
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 166/491 (33%), Positives = 252/491 (51%), Gaps = 65/491 (13%)
Query: 20 TPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T SH+ QIHA L + L P L +L + Y + S + F P++F +
Sbjct: 42 TISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVAL----FGRTQNPSVFFWT 97
Query: 79 TLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+I + ++ +A +++G+ F S + C + G+ +H
Sbjct: 98 AIIHGHALRGLHEQALNFYAQMLTQGVEP-----NAFTFSSILKLCPIEP---GKALHSQ 149
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT----------------- 177
K GF ++ V T L+ YA D+ S +++FD MP +S +
Sbjct: 150 AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAA 209
Query: 178 --------------WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
WN MI+GY + ALVLFR ML + KP + T++ V
Sbjct: 210 RVLFDGMEERDGVCWNVMIDGYTQNGMPNE-----ALVLFRRMLK--AKAKPNEVTVLSV 262
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS QLG LE G VH Y+E + +V +GTALVDMYSKCG L++A L+F ++ +K
Sbjct: 263 LSACGQLGALESGRWVHSYIENNGI--QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK 320
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+ W +M G A+HG EA++L SM G+ P +TF + +AC H+G V EG +F
Sbjct: 321 DVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIF 380
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ MK ++G+EP I+HY C+V+LLGRAGH+E+AY + + I+PD +LW +LL AC +HG
Sbjct: 381 NKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ALGEK+ ++L+ S ++ LSNIYA+ W V +R MK V+
Sbjct: 441 IALGEKIVELLVDQN--------LANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKK 492
Query: 464 EPGSSILQTTT 474
EPG S ++
Sbjct: 493 EPGCSSIEVNN 503
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 257/486 (52%), Gaps = 43/486 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T +HIKQI + L + P A I +C A + + +F
Sbjct: 20 LDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISH-AYLLFLSLPRRTS 78
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++NT++R P + ++ Y +S G L +++T+ F L +CA+ LS L G
Sbjct: 79 FIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLP-NNYTFSFLLQACAQ---LSDLSFGIL 134
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H + G+ V L+H YAS + S +++FD R TW A+INGY +
Sbjct: 135 LHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQ 194
Query: 191 -------------------KAKDCAFNALVLFRDML-----VDVSGVKPTDTTMVCVLSV 226
A + + LFR+ L + ++G +P +V L+
Sbjct: 195 VVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTA 254
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ LG L+ G +H Y+++ + D +GTAL+DMY+KCGC++ A +F M +++V
Sbjct: 255 CAFLGALDQGRWIHAYVDRNRMVL--DRILGTALIDMYAKCGCVETACRVFDEMLDRDVF 312
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+T++ +G+A HG AI + M++ GV PN VTF L +AC GLVEEGL +F +M
Sbjct: 313 AFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSM 372
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ +G+EP ++HY C+VDLLGRAG LE+A + +P++PD+ + +LL+AC VHGDV L
Sbjct: 373 TNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVEL 432
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
G++ + L + + V V LSN+YASA +W DV VRK M+ K+V+ PG
Sbjct: 433 GKETVECLAERSLDHGGV--------HVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPG 484
Query: 467 SSILQT 472
S+++
Sbjct: 485 CSLIEV 490
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 252/466 (54%), Gaps = 39/466 (8%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
+T +H+KQIHA++ + + I ++C A Q+ VF P+ FL+N
Sbjct: 23 STLNHLKQIHARIFLTGFNHNLILSGKIIMFC---AVSQNMNYALNVFDKIPKPDSFLWN 79
Query: 79 TLIR-----CTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQI 131
T+IR T +++ F + L D+FT+ F L AR L + LG+Q+
Sbjct: 80 TMIRGFGNSTTHSHNAIHFF----KRMQLAHRPDNFTFSFILKIIAR---LRFVNLGKQL 132
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING--YCSQS 189
H + K GF + V +LIH Y KDI ++F++M + +WN++I+ YC +
Sbjct: 133 HCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYCGKY 192
Query: 190 KKAKDCAFNALVLFRDMLVDVSG---VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+A D LF M+ ++P T+V LS +G L+FG VH ++
Sbjct: 193 NEAID-------LFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDG 245
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ + ALVDMY+KCG ++ A FS M+ KNV++W M G A HG G EA+
Sbjct: 246 VNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEEALA 305
Query: 307 LLDSMRDCGV-KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L M V +P+ +TF + AC H GLV+EG F+ M + ++P IKHY C+VDL
Sbjct: 306 LFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDL 365
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG EAY I +P++ +AI+WR+LL+AC +G+V LGEKV K L++L+P+
Sbjct: 366 LGRAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLMELEPD----- 420
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET-EPGSSIL 470
S D+V L+N+YAS +W ++ R+ M+ +RV EPG+S +
Sbjct: 421 ---HSSDYVLLANMYASTGQWNEMSKERRSMQERRVRKPEPGNSFI 463
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 152/323 (47%), Gaps = 26/323 (8%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F STL +QIH + GF N++++ +I F A +++++ VFD++P S W
Sbjct: 19 FNHCSTLNHLKQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLW 78
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N MI G+ + + + NA+ F+ M + +P + T +L + ++L + G
Sbjct: 79 NTMIRGFGNSTTHSH----NAIHFFKRMQL---AHRPDNFTFSFILKIIARLRFVNLGKQ 131
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H + K + EN ++ +L+ MY ++ A +F M + N+++W ++
Sbjct: 132 LHCSLFKFGF--ENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSIIDCHVYC 189
Query: 299 GKGNEAIRLLDSM-----RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLF--DNMKSK 349
GK NEAI L M ++P+ T +AC G ++ G +H F D + S
Sbjct: 190 GKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFVRDGVNS- 248
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD----VA 405
I ++ +VD+ + G +EEAY + + + + W ++ HG+ +A
Sbjct: 249 --FGESISVFNALVDMYAKCGAVEEAYETFSNMK-RKNVVSWNVMILGFASHGNGEEALA 305
Query: 406 LGEKVGKILLQLQPEVTFVDVAC 428
L ++ ++ E+TF+ V C
Sbjct: 306 LFTRMLHENVERPDEITFLCVLC 328
>gi|255582129|ref|XP_002531859.1| Cell division protein ftsH, putative [Ricinus communis]
gi|223528509|gb|EEF30537.1| Cell division protein ftsH, putative [Ricinus communis]
Length = 1157
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 261/485 (53%), Gaps = 38/485 (7%)
Query: 9 CFALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFT 67
C +LLKL ++ H+ QIH+Q+ + L+ L QLI+ + + + +
Sbjct: 667 CLSLLKL--CSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKF--SSLSPSKDLSYAQSILD 722
Query: 68 HFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
H P +N LIR P+D++ V+ ++G+ + T+ F L +CA +
Sbjct: 723 HSVHPVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRP-NSLTFPFLLKACAACFATK 781
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G+Q+HV V K G +V V L++FY S K I KVFD+MP R+ +WNA+I
Sbjct: 782 E---GKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAVIT 838
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY- 242
C +S K + A + RD G +P TTMV +L + +++G L G +H
Sbjct: 839 S-CVESLKLGE-AIRYFLKMRDF-----GFEPDGTTMVLMLVICAEMGNLGLGRWIHSQV 891
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+E+ + + +GTALVDMY+K G + A L+F RM+EKNV TW+AM G+A HG
Sbjct: 892 IERGLVL---NYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAK 948
Query: 303 EAIRL-LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
E + L LD MR + PN VTF + AC HAGLV +G F M +G++P + HY
Sbjct: 949 EGLELFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGA 1008
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH---GDVALGEKVGKILLQLQ 418
+VD+LGRAG L+EAYNFI +P +PD I+WR+LLSAC++H + KV K LL+L+
Sbjct: 1009 MVDILGRAGLLKEAYNFITKMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELE 1068
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTHY 476
P S +FV ++N+YA A W VR+ M+ ++ + G S L + H
Sbjct: 1069 PR--------RSGNFVMVANMYADAGMWEKAAKVRRVMRDGGLKKKAGESCVELSGSIHR 1120
Query: 477 TLDGF 481
G+
Sbjct: 1121 FFSGY 1125
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 166/488 (34%), Positives = 254/488 (52%), Gaps = 34/488 (6%)
Query: 2 LSLPGHRCFALLK-----LKAITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTK 52
+SL C+ L + L+ + S +KQ+HA + P LY +++QL
Sbjct: 14 VSLGQSSCYQLDRVHATVLQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQL---- 69
Query: 53 KASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDF 107
+S VF + + F++NTLIR + +++ +++ + +G + D
Sbjct: 70 SSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKH 129
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ F L +CA S G+Q+H + K GF +V V LIH Y S + +KVF
Sbjct: 130 TFPFVLKACAYIFGFSE---GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 186
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D+MP RS +WN+MI+ + +AL LFR+M +P TM VLS
Sbjct: 187 DEMPERSLVSWNSMIDALVRFGEYD-----SALQLFREMQ---RSFEPDGYTMQSVLSAC 238
Query: 228 SQLGLLEFGACVHGYM-EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ LG L G H ++ K DV + +L++MY KCG L A +F M+++++
Sbjct: 239 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 298
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+W AM G A HG+ EA+ D M D V+PN+VTF L AC H G V +G FD
Sbjct: 299 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 358
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-D 403
M + +EP ++HY CIVDL+ RAG++ EA + +M +P+KPDA++WRSLL AC G
Sbjct: 359 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGAS 418
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V L E++ + ++ + + + C+ +V LS +YASA RW DV VRK M +
Sbjct: 419 VELSEEIARNIIGTKEDNESSNGNCSGA-YVLLSRVYASASRWNDVGIVRKLMSEHGIRK 477
Query: 464 EPGSSILQ 471
EPG S ++
Sbjct: 478 EPGCSSIE 485
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 256/456 (56%), Gaps = 29/456 (6%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS-TKIVHFVFTHFDPPNLFLFNTLIR 82
++QIHA+L+T+A+ + L ++ SP +F+ PN+F +N++IR
Sbjct: 4 LRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 63
Query: 83 -C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
C TP ++ V++F V +G + FT F L +C+ +S L G+Q+H +V K
Sbjct: 64 GCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACS---IVSALEEGQQVHANVLK 120
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + V T L++FYA +DI KVFD++ R+ W+ MI+GY A+
Sbjct: 121 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGY------ARIGLV 174
Query: 198 N-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
N AL LFRDM +GV P + TMV V+S + G L+ G VH Y+ K E D+ +
Sbjct: 175 NEALGLFRDM--QKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLI--ETDLEL 230
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
TALV+MY+KCGC++ A +F M K+ W++M G+AI+G +A+ M + V
Sbjct: 231 STALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKV 290
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KPN VTF + +AC H+GLV EG + +M ++G+ P ++ Y C+VDLL RA +E+A
Sbjct: 291 KPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDAC 349
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+ +PI P+ ++WR+LL C ++ E V + LL+L+P +E+++ L
Sbjct: 350 TLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPH--------NAENYILL 401
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
SN+YAS +W + VRK+MK ++ PG S ++
Sbjct: 402 SNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEV 437
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 252/466 (54%), Gaps = 26/466 (5%)
Query: 11 ALLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIV---HFVF 66
ALL + P Q+HA L+ T L P+ L + P + H +
Sbjct: 23 ALLASASPIPPRRFLQLHAHLLRTGLLALSPVTTTAAFLSLAAASLPSHRALAVLDHHLT 82
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+ F N+++R L F + + FT L C+L+
Sbjct: 83 AASSLPSTFQCNSILRVLSDPSDALRFLRRMRALGRRGNAFTLAILLKP---RCALAH-- 137
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
RQ+H +V G + + L+AT+L+ YA+ D +K+F +MP R + WN +I+ C
Sbjct: 138 -ARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPARDAVAWNVLIS-CC 195
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+++++ KD AL LF +M SG +P D T + +L + LG L+FG V Y E+
Sbjct: 196 ARNRRTKD----ALKLFEEMRGRDSGAEPDDVTCILLLQACTSLGALDFGEQVWAYAEEH 251
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
Y + + + +L+ MYS+CGC+D A +F +K+V+TW+AM +G+A +G G++AI
Sbjct: 252 GYGAK--LKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAIS 309
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ M V P+ TFT + +AC H+GLV+EG FD M+ ++G++P+++HY CIVDL+
Sbjct: 310 AFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLM 369
Query: 367 GRAGHLEEAYNFIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
GRAG L+EAY + + + PDA +WR+LL AC +HG V LGE+V L++L+ +
Sbjct: 370 GRAGLLDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQ----- 424
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V L N YA+ W V VRK M+ K ++T PG + ++
Sbjct: 425 ---QAGDYVLLLNTYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVE 467
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 256/456 (56%), Gaps = 29/456 (6%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS-TKIVHFVFTHFDPPNLFLFNTLIR 82
++QIHA+L+T+A+ + L ++ SP +F+ PN+F +N++IR
Sbjct: 73 LRQIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIR 132
Query: 83 -C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
C TP ++ V++F V +G + FT F L +C+ +S L G+Q+H +V K
Sbjct: 133 GCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACS---IVSALEEGQQVHANVLK 189
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + V T L++FYA +DI KVFD++ R+ W+ MI+GY A+
Sbjct: 190 SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGY------ARIGLV 243
Query: 198 N-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
N AL LFRDM +GV P + TMV V+S + G L+ G VH Y+ K E D+ +
Sbjct: 244 NEALGLFRDM--QKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLI--ETDLEL 299
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
TALV+MY+KCGC++ A +F M K+ W++M G+AI+G +A+ M + V
Sbjct: 300 STALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKV 359
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KPN VTF + +AC H+GLV EG + +M ++G+ P ++ Y C+VDLL RA +E+A
Sbjct: 360 KPNHVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDAC 418
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+ +PI P+ ++WR+LL C ++ E V + LL+L+P +E+++ L
Sbjct: 419 TLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPH--------NAENYILL 470
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
SN+YAS +W + VRK+MK ++ PG S ++
Sbjct: 471 SNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEV 506
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 175/514 (34%), Positives = 253/514 (49%), Gaps = 84/514 (16%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQL-YCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQIHA LI S A L +L + + H VF P++F++NT++R
Sbjct: 29 LKQIHATLIIKGFNSN--RAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMR 86
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P VL++ ++G+ D FT+ F L C R T G +H V K
Sbjct: 87 GSSQSKNPSKVVLLYTQMENRGVKP-DKFTFSFLLKGCTRLEWRKT---GFCVHGKVLKY 142
Query: 139 GFMFNVLVATTLIHF-------------------------------YASNKDISSGKKVF 167
GF N V TLI+F YA ++ +++F
Sbjct: 143 GFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIF 202
Query: 168 DQMPMRSSATWNAMINGYCSQSK-----------KAKDCA---------------FNALV 201
D+MP++ +WN MI GY + KD AL
Sbjct: 203 DEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALE 262
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND--VFIGTA 259
+F +M G P + TM+ +LS + LG L+ G +H + + M D V +G A
Sbjct: 263 MFEEM--RNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISE---MTRGDLSVLLGNA 317
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKP 318
LVDMY+KCG ++ AL +F +MREK+V TW ++ G+A HG E+I+L M+ +KP
Sbjct: 318 LVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKP 377
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +TF + AC HAG VEEG F M+ ++ +EP++ H+ C+VDLLGRAG L EA+
Sbjct: 378 NEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFEL 437
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + I+P+AI+WR+LL AC VHG+V LG + LL+L+ + S D+V LSN
Sbjct: 438 IAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRD--------ESGDYVLLSN 489
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
IYASA W E VRK M V E G S+++
Sbjct: 490 IYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEA 523
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 248/464 (53%), Gaps = 53/464 (11%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
+Y LI +Y + K+ + T + + +RC +D++ F +G
Sbjct: 280 VYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEG 339
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-GF------------------- 140
D+ T V L +C +L L LG +IH +V K GF
Sbjct: 340 NEKPDEATVVSTLSACT---ALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLN 396
Query: 141 ----------MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
M NV+ T++I Y + D+ + +FD+ P+R W AMINGY Q
Sbjct: 397 IARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYV-QFH 455
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
D A+ LFR+M + VKP T+V +L+ +QLG LE G +HGY+++
Sbjct: 456 HFDD----AVALFREM--QIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITM 509
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
DV +GTAL++MYSKCGC+D +L IF + +K+ +WT++ G+A++GK +EA+RL
Sbjct: 510 --DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSE 567
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M G KP+ +TF + +AC H GLVEEG F++MK +EP ++HY C++DLLGRAG
Sbjct: 568 MERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAG 627
Query: 371 HLEEAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
L+EA I IPI+ I L+ +LLSAC +H +V +GE++ K L ++ +
Sbjct: 628 LLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIE--------S 679
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
C S L+NIYAS +RW D + VR++MK V+ PG S+++
Sbjct: 680 CDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIE 723
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 195/463 (42%), Gaps = 82/463 (17%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQI +Q+ L+ + +C +S + + +F + P+L
Sbjct: 150 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCAD-SSLGNLRYAEKIFNYVQDPSL 208
Query: 75 FLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++N +++ + +L+F GL D FTY F L + L + G +
Sbjct: 209 FVYNVMVKMYAKRGILRKVLLLFQQLREDGLWP-DGFTYPFVLKAIG---CLRDVRQGEK 264
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+ + K G + V +LI Y ++ + KK+FD+M R S +WN MI+GY + +
Sbjct: 265 VRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYV-RCR 323
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ +D A+ FR+M + KP + T+V LS + L LE G +H Y+ K
Sbjct: 324 RFED----AINTFREMQQE-GNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT 378
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
I AL+DMY+KCGCL+ A IF M KNV+ WT+M +G G EA L D
Sbjct: 379 TR---IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435
Query: 311 --MRDC-----------------------------GVKPNAVTFTSLFAACCHAGLVEEG 339
+RD VKP+ T +L C G +E+G
Sbjct: 436 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG 495
Query: 340 L----HLFDN--------------MKSKWGV------------EPHIKHYSCIVDLLGRA 369
+L +N M SK G + ++ I+ L
Sbjct: 496 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 555
Query: 370 GHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
G EA ++ + + KPD I + +LSAC+ G V G +
Sbjct: 556 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRR 598
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 155/354 (43%), Gaps = 30/354 (8%)
Query: 115 SCARFC-SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQMP 171
C R C S+ L +QI + + G + L+ F A + ++ +K+F+ +
Sbjct: 148 ECLRNCKSMDQL---KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQ 204
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
S +N M+ Y + K L+LF+ + D G+ P T VL L
Sbjct: 205 DPSLFVYNVMVKMYAKRGILRK-----VLLLFQQLRED--GLWPDGFTYPFVLKAIGCLR 257
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+ G V G++ KT +N V+ +L+DMY + ++NA +F M ++ ++W M
Sbjct: 258 DVRQGEKVRGFIVKTGMDLDNYVY--NSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 315
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+G + +AI M+ G KP+ T S +AC +E G + + ++ +
Sbjct: 316 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL 375
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G I + ++D+ + G L A N + +K + I W S++S GD+ +
Sbjct: 376 GFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDL----RE 428
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ L P DV + A+ N Y + D ++ ++M+++RV+ +
Sbjct: 429 ARDLFDKSP---VRDVVL----WTAMINGYVQFHHFDDAVALFREMQIQRVKPD 475
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 149/424 (35%), Positives = 233/424 (54%), Gaps = 42/424 (9%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L N +R P++++ ++ +++ + D+ T + + +CA+ L +L LGR+IH ++
Sbjct: 226 LINGYVRRRQPREAMGIYQQMITEHVKP-DEVTMIGVVSACAQ---LESLKLGREIHRYI 281
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ------- 188
+ G + + L+ Y D+ +GK +FD M ++ +W MI GY
Sbjct: 282 EESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAG 341
Query: 189 -------------------SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
S + +F AL LFR+M S +KP TM+ LS SQ
Sbjct: 342 KLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREM--QWSNMKPDKVTMLHCLSACSQ 399
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG L+ G H Y++K + DV +GTAL+DMY+KCG + AL +F+ M +N LTWT
Sbjct: 400 LGALDTGMWTHNYIKK--HNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWT 457
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
A+ G+A++G N+AI M D G+ P+ +TF + ACCH GLVEEG FD MKS+
Sbjct: 458 AIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSR 517
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+ + P KHYSC+V+LLGRAG LEEA I +P++ DA++W +L AC +H ++ +GE+
Sbjct: 518 FNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGER 577
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
LL L P + + +V L+N+Y A +W + +++RK M + VE PGSS
Sbjct: 578 AASKLLDLDPHDSGI--------YVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSS 629
Query: 470 LQTT 473
++
Sbjct: 630 IEVN 633
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/418 (24%), Positives = 193/418 (46%), Gaps = 50/418 (11%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
S +KQI AQ+I L + + +C S + + + PN+F +N +I
Sbjct: 67 SQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIK-ILNNLQNPNVFSWNAVI 125
Query: 82 R-CTP---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R C PQ ++++ +++ D++TY F CA +L ++G +I V K
Sbjct: 126 RGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCA---NLVLSYMGFEILGQVLK 182
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF ++ + +IH S + KVFD+ +R +WN++INGY + + +
Sbjct: 183 MGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPRE---- 238
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A+ +++ M+ + VKP + TM+ V+S +QL L+ G +H Y+E++ + + +
Sbjct: 239 -AMGIYQQMITE--HVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLK--ISLV 293
Query: 258 TALVDMYSKCGCLDNALLIFSRMR-------------------------------EKNVL 286
AL+DMY KCG L+ ++F MR EKNV+
Sbjct: 294 NALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVV 353
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
W AM EA+ L M+ +KP+ VT +AC G ++ G+ + +
Sbjct: 354 AWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYI 413
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
K K + + + ++D+ + G++ +A +P + +++ W +++ ++G+V
Sbjct: 414 K-KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMP-RRNSLTWTAIIGGLALYGNV 469
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 162/464 (34%), Positives = 248/464 (53%), Gaps = 53/464 (11%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
+Y LI +Y + K+ + T + + +RC +D++ F +G
Sbjct: 234 VYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEG 293
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-GF------------------- 140
D+ T V L +C +L L LG +IH +V K GF
Sbjct: 294 NEKPDEATVVSTLSACT---ALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLN 350
Query: 141 ----------MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
M NV+ T++I Y + D+ + +FD+ P+R W AMINGY Q
Sbjct: 351 IARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYV-QFH 409
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
D A+ LFR+M + +KP T+V +L+ +QLG LE G +HGY+++
Sbjct: 410 HFDD----AVALFREM--QIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITM 463
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
DV +GTAL++MYSKCGC+D +L IF + +K+ +WT++ G+A++GK +EA+RL
Sbjct: 464 --DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSE 521
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M G KP+ +TF + +AC H GLVEEG F++MK +EP ++HY C++DLLGRAG
Sbjct: 522 MERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAG 581
Query: 371 HLEEAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
L+EA I IPI+ I L+ +LLSAC +H +V +GE++ K L ++ +
Sbjct: 582 LLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIE--------S 633
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
C S L+NIYAS +RW D + VR++MK V+ PG S+++
Sbjct: 634 CDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIE 677
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 195/463 (42%), Gaps = 82/463 (17%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQI +Q+ L+ + +C +S + + +F + P+L
Sbjct: 104 LRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCAD-SSLGNLRYAEKIFNYVQDPSL 162
Query: 75 FLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++N +++ + +L+F GL D FTY F L + L + G +
Sbjct: 163 FVYNVMVKIYAKRGILRKVLLLFQQLREDGLWP-DGFTYPFVLKAIG---CLRDVRQGEK 218
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+ + K G + V +LI Y ++ + KK+FD+M R S +WN MI+GY + +
Sbjct: 219 VRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYV-RCR 277
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ +D A+ FR+M + KP + T+V LS + L LE G +H Y+ K
Sbjct: 278 RFED----AINTFREMQQE-GNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT 332
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
I AL+DMY+KCGCL+ A IF M KNV+ WT+M +G G EA L D
Sbjct: 333 TR---IDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 389
Query: 311 --MRDC-----------------------------GVKPNAVTFTSLFAACCHAGLVEEG 339
+RD +KP+ T +L C G +E+G
Sbjct: 390 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG 449
Query: 340 L----HLFDN--------------MKSKWGV------------EPHIKHYSCIVDLLGRA 369
+L +N M SK G + ++ I+ L
Sbjct: 450 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 509
Query: 370 GHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
G EA ++ + + KPD I + +LSAC+ G V G +
Sbjct: 510 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRR 552
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 30/354 (8%)
Query: 115 SCARFC-SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQMP 171
C R C S+ L +QI + + G + L+ F A + ++ +K+F+ +
Sbjct: 102 ECLRNCKSMDQL---KQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQ 158
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
S +N M+ Y + K L+LF+ + D G+ P T VL L
Sbjct: 159 DPSLFVYNVMVKIYAKRGILRK-----VLLLFQQLRED--GLWPDGFTYPFVLKAIGCLR 211
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+ G V G++ KT +N V+ +L+DMY + ++NA +F M ++ ++W M
Sbjct: 212 DVRQGEKVRGFIVKTGMDLDNYVY--NSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVM 269
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+G + +AI M+ G KP+ T S +AC +E G + + ++ +
Sbjct: 270 ISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKEL 329
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G I + ++D+ + G L A N + +K + I W S++S GD+ +
Sbjct: 330 GFTTRIDN--ALLDMYAKCGCLNIARNIFDEMSMK-NVICWTSMISGYINCGDL----RE 382
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ L P DV + A+ N Y + D ++ ++M++++++ +
Sbjct: 383 ARDLFDKSP---VRDVVL----WTAMINGYVQFHHFDDAVALFREMQIQKIKPD 429
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 167/466 (35%), Positives = 250/466 (53%), Gaps = 35/466 (7%)
Query: 19 TTPSHIKQIHAQLIT--NALKSPPLYAQLIQLYCTKKAS--PQSTKIVHFVFTHF-DPPN 73
T+ + Q+HA + L++ P + + CT++ + P VF P +
Sbjct: 39 TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98
Query: 74 LFLFNTLIRCTP--------PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
+ +NTL+R +++ VF + +G+ D +T+V L +CA S
Sbjct: 99 VVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAP-DTYTFVSLLKACA---SARAG 154
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
GRQ H K G + VA TLI+ YA D+ + + +FD+M ++NAMI
Sbjct: 155 EEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITAS 214
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
S + ALVLFR+M G+KPT T++ VLS + LG LE G +H Y+ K
Sbjct: 215 VRSSLPGE-----ALVLFREM--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
++ V + TAL+DMY+KCG L++A+ +F M ++ W+ M A HG G EAI
Sbjct: 268 MRL--DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAI 325
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ + M+ G+KP+ VTF + AC H+G+V EGL FD+M+ ++G+ IKHY C+ DL
Sbjct: 326 SMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDL 384
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
L R+G LE AY FI +PIKP AILWR+LLSAC HGDV +G++V + +L+L
Sbjct: 385 LARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS----- 439
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V SN+ A+ RW ++ VRK M K V PG S ++
Sbjct: 440 ---HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIE 482
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/494 (33%), Positives = 251/494 (50%), Gaps = 52/494 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNA----LKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFT 67
+K T S + Q+HA ITN SP L + + TK S ST ++H+ +F
Sbjct: 23 IKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSIFN 82
Query: 68 HFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
P+ F +NT+IR L F + + + D ++ F L +CA+ L
Sbjct: 83 SIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQ---LGG 139
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
++ R +H V K GF+ ++ V +LIH Y + + KVFD+ P R ++N +I+G
Sbjct: 140 VFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDG 199
Query: 185 YCSQSKKAK--------------------------DCAFNALVLFRDMLVDVSGVKPTDT 218
+ K D A+ LF D ++D+ ++P +
Sbjct: 200 FVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELF-DFMMDLE-IRPDNV 257
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
+V LS +QLG LE G +H Y+E+ + D F+ T LVD Y+KCGC+D AL IF
Sbjct: 258 ALVSTLSACAQLGELEKGKKIHDYIERN--AMKVDTFLSTGLVDFYAKCGCVDIALKIFD 315
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
+KN+ TW AM G+A+HG G + M + GVKP+ ++ + C H+GLV+E
Sbjct: 316 SSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDE 375
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
LFD M+S +GV KHY C+ DLLGRAG +++ I +P D +W LL C
Sbjct: 376 ARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGLLGGC 435
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+HGDV + EK K L++L+P+ V + L+N+YA+AERW DV ++R+ +
Sbjct: 436 RIHGDVEIAEKAAKHLMELKPDDGGV--------YSILANVYANAERWEDVMNIRRSLSS 487
Query: 459 KRVETE-PGSSILQ 471
RV T+ G S++Q
Sbjct: 488 NRVVTKIAGFSLIQ 501
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 172/508 (33%), Positives = 270/508 (53%), Gaps = 54/508 (10%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTK 60
+ LP + F+LL L S ++QIHAQ++T AL S L A LI Y K P +
Sbjct: 69 IDLPNPQTFSLL-LNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNA-- 125
Query: 61 IVHFVFTHFDPPN--LFLFNTLIRCTP----PQDSVLVFAYWVS-KGLLTF--DDFTYVF 111
+F H+ P+ + L+N +IR Q+ + +F ++ G + D++T+ F
Sbjct: 126 --RILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTF 183
Query: 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
+ SC+ SL G +H V K GF N+ V ++I+ + + +KVF+QM
Sbjct: 184 VITSCSHQISL---IYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMS 240
Query: 172 MRSSATWNAMINGYCSQSKKAKDCA-FN-------------------------ALVLFRD 205
R +W +++ GY + + C FN AL F +
Sbjct: 241 ERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCN 300
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
ML D V P + +VCVLS + LG L+ G +H Y++K ++ I TAL+DMY+
Sbjct: 301 MLCD-DRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSN--ISTALIDMYA 357
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG +D A +F+ + +++VL++T+M +G++ HG G +A+R+ M D V PN +T
Sbjct: 358 KCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILG 417
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ C H+GLVEEG + NM+S WG+ P I+HY C +DLLGRAG+LE A + +P++
Sbjct: 418 VLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPME 477
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445
PD ++WR+LLSA +H +V LGE++ + QL+ + + V LSN+YAS R
Sbjct: 478 PDIVIWRALLSASRIHHNVNLGEQIISHIGQLKS-------SDHNGGEVLLSNLYASLGR 530
Query: 446 WPDVESVRKQMKVKRVETEPGSSILQTT 473
W V +RK M +R E+ PG S ++
Sbjct: 531 WERVTEMRKLMVDRRSESSPGCSWIEVN 558
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/461 (34%), Positives = 250/461 (54%), Gaps = 23/461 (4%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQL-YCTKKASPQSTKIVHFVFTHFDPPN 73
LK KQ+HA+ I +L ++ L C S +F D P
Sbjct: 38 LKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 97
Query: 74 LFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F F T+IR + S L F + + + D+FTY L +C R L + G+Q
Sbjct: 98 TFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTR---LKAIREGKQ 154
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH HV K G +V V +LI+ Y ++ VF+++ +S+A+W++M + C
Sbjct: 155 IHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSA-CVGMG 213
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+C L+LFR+M + + +K ++ MV LS + G L G +HG++ + +
Sbjct: 214 MWSEC----LMLFREMCRE-TNLKAEESGMVSALSACANTGALNLGMSIHGFLLRN--IS 266
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E ++ + T+LVDMY KCGC+DNAL IF +M ++N LT++AM +G A+HG+G A+R+
Sbjct: 267 ELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSE 326
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M G++P+ V + SL AC H+GLV+EG +F M + VEP +HY C+VDLLGRAG
Sbjct: 327 MIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAG 386
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
LEEA I IPI+ + ++WRS LS C VH ++ LG+ + LL+L +
Sbjct: 387 LLEEALETIQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKL--------CSHNP 438
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D++ +SN+Y+ A W DV R ++ +K ++ PG S ++
Sbjct: 439 GDYLLISNMYSQAHMWDDVARSRTEIAIKGLKQTPGFSTVK 479
>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/466 (33%), Positives = 251/466 (53%), Gaps = 31/466 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + KQ+HA ++ L + C + S + +F+ + P
Sbjct: 38 LKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCAL-SRWGSMEYACSIFSQIEEPGS 96
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +NT+IR ++++L++ + +G+ D+FTY F L +C+ +L G Q
Sbjct: 97 FEYNTMIRGNVNSMDLEEALLLYVEMLERGIEP-DNFTYPFVLKACSLLVALKE---GVQ 152
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH HV K G +V V LI Y I VF+QM +S A+W+++I + S +
Sbjct: 153 IHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHAS-VE 211
Query: 191 KAKDCAFNALVLFRDMLVDVSGV---KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+C +L D+SG + ++ +V LS + LG G C+HG + +
Sbjct: 212 MWHECLM--------LLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRN- 262
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E +V + T+L+DMY KCG L+ L +F M KN ++T M G+AIHG+G EA+R+
Sbjct: 263 -ISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRV 321
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M + G+ P+ V + + +AC HAGLV EGL F+ M+ + ++P I+HY C+VDL+G
Sbjct: 322 FSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMG 381
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+EAY+ I +PIKP+ ++WRSLLSAC VH ++ +GE + + +L
Sbjct: 382 RAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKH------- 434
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
D++ L+N+YA A++W +V +R +M K + PG S+++
Sbjct: 435 -NPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEAN 479
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 253/464 (54%), Gaps = 25/464 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
+K + KQ+H Q++ L + + C + S +F D P
Sbjct: 39 VKKCKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCAL-SDWNSMDYACSIFQQLDEPTT 97
Query: 75 FLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F FNT+IR ++++ ++ + + + D+FTY L +CAR L+ + G Q
Sbjct: 98 FDFNTMIRGYVNNMNFENAIYLYNDMLQREVEP-DNFTYPVVLKACAR---LAVIQEGMQ 153
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH HV K G +V V +LI+ Y +DI +F +M +S A+W+A+I + S +
Sbjct: 154 IHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAM 213
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ L LF DM + + ++ +V VLS + LG G C HG + K +
Sbjct: 214 -----WWECLALFEDMSRE-GCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKN--IT 265
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E +V + T+L+DMY KCG L L +F M KN L+++ + +G+ +HG G +A+++
Sbjct: 266 ELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSE 325
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M + G++P+ VT+ S+ +AC H+GLV+EGL LFD MK ++ +EP ++HY C+VDL GRAG
Sbjct: 326 MVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAG 385
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
LEEA+ + +PIK + +LWRSLLSAC VH ++ LGE + L +L
Sbjct: 386 LLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSH--------NP 437
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
D++ LSN+YA A++W + +R +M + + PG S+++ +
Sbjct: 438 SDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKS 481
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/484 (33%), Positives = 246/484 (50%), Gaps = 48/484 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T SH+ +IH + + L+ S + A + + + + P +T++ F H PN
Sbjct: 15 LHGGKTRSHLTEIHGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRL----FAHTHNPN 70
Query: 74 LFLFNTLIRCT---PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+ LFN +I+ PP + F + ++ D++T S + +L LG
Sbjct: 71 ILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSAS---NLRYYVLGGC 127
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC---- 186
+H HV + GF + V + YAS + + KVFD+M WN MI G+C
Sbjct: 128 VHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGD 187
Query: 187 --------SQSKKAKDCAFN--------------ALVLFRDMLVDVSGVKPTDTTMVCVL 224
Q K+ ++N AL LF +ML G +P D ++V VL
Sbjct: 188 LETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQ--GFEPDDASLVTVL 245
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
V ++LG ++ G +H Y ++ ++ + +G +LVD Y KCG L A IF+ M KN
Sbjct: 246 PVCARLGAVDIGEWIHSYANSKGFL-QDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKN 304
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W AM +G+A +G+G + L + M G +PN TF + A C H GLV+ G LF
Sbjct: 305 VVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFA 364
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M K+ V P ++HY C+VDLLGR GH+ EA + I +P+KP A LW +LLSAC +GD
Sbjct: 365 SMSVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMPLKPTAALWGALLSACRTYGDR 424
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ E K L++L+P S ++V LSN+YA RW +VE VR M+ V+
Sbjct: 425 EIAENAAKELVRLEP--------WNSGNYVLLSNVYAEEGRWDEVEKVRVLMRGGGVKKV 476
Query: 465 PGSS 468
PG S
Sbjct: 477 PGQS 480
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 161/464 (34%), Positives = 252/464 (54%), Gaps = 37/464 (7%)
Query: 23 HIKQ---IHAQLITNALKSPPLYAQLIQLYCTK-KASPQSTKIVHFVFTHFDPPNLFLFN 78
HI Q IHAQLI N P + C+K A +++I F +TH PN++L+
Sbjct: 51 HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI--FQYTH--NPNVYLYT 106
Query: 79 TLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
LI +++ +++ + + +L D++ L +C S L GR++H
Sbjct: 107 ALIDGFVSSGNYLEAIQLYSRMLHESILP-DNYLMASILKACG---SQLALREGREVHSR 162
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP----MRSSATWNAMINGYCSQSK 190
K GF N LV ++ Y ++ ++VF++MP + + W AMI+G+ +
Sbjct: 163 ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEE 222
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ AL FR M + V+P + T+VCVLS SQLG LE G VH YM K +
Sbjct: 223 TNR-----ALEAFRGMQGE--NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK--FEI 273
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E ++F+G AL++MYS+CG +D A +F M++++V+T+ M +G++++GK +AI L
Sbjct: 274 ELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRV 333
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M ++P VTF + AC H GLV+ G +F +M + VEP I+HY C+VDLLGR G
Sbjct: 334 MVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVG 393
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
LEEAY+ I + + PD I+ +LLSAC +H ++ LGE+V K L S
Sbjct: 394 RLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG--------QADS 445
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+V LS++YAS+ +W + VR +MK ++ EPG S ++
Sbjct: 446 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 489
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 260/493 (52%), Gaps = 47/493 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L + +T + +KQ H+Q+I L + + +C S + VF
Sbjct: 24 LYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALE-VFDKIPH 82
Query: 72 PNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P+ +++NT+ +R ++ + +++ + K + + + FTY + +C C +
Sbjct: 83 PDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSV-SPNKFTYPPLIRAC---CIDYAIEE 138
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+QIH HV K GF + LIH Y + + + ++VFD MP R +W ++I GY
Sbjct: 139 GKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQ 198
Query: 188 QS--KKAKDC----------AFNALV--------------LFRDMLVDVSGVKPTDTTMV 221
KA++ ++NA++ LF M ++ V
Sbjct: 199 WGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLE--NVVLDKFVAA 256
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+LS + LG LE G +HGY+EK+ E D + T ++DMY KCGCL+ A +F+ +
Sbjct: 257 SMLSACTGLGALEQGKWIHGYIEKSGI--ELDSKLATTVIDMYCKCGCLEKASEVFNELP 314
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+K + +W M G+A+HGKG AI L M V P+ +TF ++ +AC H+GLVEEG H
Sbjct: 315 QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKH 374
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F M G++P ++H+ C+VDLLGRAG LEEA I +P+ PDA + +L+ AC +H
Sbjct: 375 YFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIH 434
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G+ LGE++GK +++L+P S +V L+N+YASA RW DV VRK M + V
Sbjct: 435 GNTELGEQIGKKVIELEPH--------NSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV 486
Query: 462 ETEPGSSILQTTT 474
+ PG S++++ +
Sbjct: 487 KKAPGFSMIESES 499
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/469 (34%), Positives = 252/469 (53%), Gaps = 43/469 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHF-----V 65
LL + T+ H+KQ HA ++ T L+ + L++ Y A+ + + + F V
Sbjct: 59 LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSY----ANVSTNRYLSFESSLRV 114
Query: 66 FTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
F PN+FL+N +I+ P ++L++ Y + + +TY L +C+
Sbjct: 115 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLY-YEMMVAHFRPNKYTYPAVLKACS---D 170
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
+ G Q+H H+ K G + + ++ I YAS + +++ D
Sbjct: 171 AGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK--------GGE 222
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
++ C +K C AL +F M + ++P + VLS + LG L+ G +H
Sbjct: 223 VDAVCMPDRKG--CFMEALEIFHQMQKE--KIRPRKFVLPSVLSACANLGALDQGRWIHT 278
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y ++ + D +GT+LVDMY+KCG +D A +F +M K V +W AM G+A+HG+
Sbjct: 279 YAKRNSI--QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRA 336
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+AI L M + PN +TF + AC H GLV++GL +F++M+ ++GVEP I+HY C
Sbjct: 337 EDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGC 393
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
IVDLLGRAG L EA + IP +P +W +LL AC HG+V LGE+VGKILL+L+P+
Sbjct: 394 IVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ- 452
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
S + LSNIYA A RW +V VRK MK + ++T PG+SI+
Sbjct: 453 -------NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 494
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 256/468 (54%), Gaps = 25/468 (5%)
Query: 9 CFALLKLK-AITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
C ALL+L A + + +KQ+HA+ + + + PL A+ + + +P V +
Sbjct: 19 CVALLRLHLAAPSLATVKQLHARALRAGVPPAHPLLAKHLLFHLASLRAPPLRYAVAVLT 78
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+ F NT++R + ++ L D TY L +CAR SL
Sbjct: 79 RVLPDPDPFSLNTVLRIAASSSRPSLALALHARRLAPPDTHTYPPLLQACARLLSLRH-- 136
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNAMING 184
G +IH K G V V +L+H Y + S +VFD++P+ R+ +WN+M+NG
Sbjct: 137 -GERIHAEAAKNGLATLVFVKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNG 195
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
+ + + + L +FR+ML DV+ P T+V VL+ S+++G L G VH Y+
Sbjct: 196 FAANGRPNE-----VLTIFREML-DVN-FMPDGFTVVSVLTASAEIGALALGRRVHVYLT 248
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNE 303
K + EN +G AL+D+Y+KCG +++A +F M + V++WT++ G+A++G G E
Sbjct: 249 KVGLV-ENS-HVGNALIDLYAKCGGVEDARRVFEEMGARRTVVSWTSLIVGLAVNGFGKE 306
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A+ L M + P +T + AC H GLV++G F+ MK ++ + P I+H C+V
Sbjct: 307 ALELFGIMEREKLVPTEITMVGVLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMV 366
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLLGRAG ++EAY++I+ +P++P+A++WR+LL AC +H + LGE L++L P
Sbjct: 367 DLLGRAGKVKEAYDYILTMPLEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDP---- 422
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YA+ RW DV +RK M V PG S+++
Sbjct: 423 ----GHSGDYVLLSNLYAAVGRWADVHVLRKTMVKDGVRKNPGRSLVE 466
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/488 (33%), Positives = 256/488 (52%), Gaps = 59/488 (12%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF-DPPNLFLFNTLI 81
H+ Q HA ++ AL L L+ L+ +S + + +FT PPN+FL+NT+I
Sbjct: 26 HLHQTHAFMLCRALDHDNL---LLSLFIQSSSSLGFSLYAYSLFTSLTHPPNIFLYNTII 82
Query: 82 RCTP--PQDSVLVFAY-WVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R PQ S+ +F + + L D +++ FAL + R + T G Q H +
Sbjct: 83 RALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKT---GLQFHSQAIRF 139
Query: 139 GFMFNVLVATTLIHFYASNK--------------------------------DISSGKKV 166
G ++ V +LI Y+S+ D+ + + +
Sbjct: 140 GLHSHLHVLVSLIRMYSSSHISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHL 199
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD MP R+ +W A+I+GY ++ + A+ +FR M + V P + T++ VLS
Sbjct: 200 FDSMPQRNLISWTALISGYAHINRPHQ-----AIAIFRTM--QLQNVVPDEITLLAVLSA 252
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+QLG LE G + Y++ + +V + AL+DMY+K G + ALLIF M+ K ++
Sbjct: 253 CAQLGALELGEWIRNYID--IHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIV 310
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TWT M G+A+HG G +A+ + M VKPN +TF ++ +AC H GLV+ F NM
Sbjct: 311 TWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNM 370
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+S++ ++P I+HY C++DLLGRAG+L+EA + +P +P+A +W SLL+A HGD L
Sbjct: 371 RSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAML 430
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
GE+ K L++L+P S ++ LSNIYAS RW VRK M+ + V+ PG
Sbjct: 431 GERTLKHLIELEPN--------NSGNYALLSNIYASLGRWKASRIVRKMMRDRGVKKIPG 482
Query: 467 SSILQTTT 474
S ++
Sbjct: 483 GSFIEVNN 490
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 259/479 (54%), Gaps = 43/479 (8%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+HIKQI + L + P A I +C A + + +F F++NT++
Sbjct: 2 AHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISH-AYLLFLSLPRRTSFIWNTML 60
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R P + ++ Y +S G L +++T+ F L +CA+ LS L G +H +
Sbjct: 61 RAFTDKKEPATVLSLYKYMLSTGFLP-NNYTFSFLLQACAQ---LSDLSFGILLHAQAVR 116
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------- 190
G+ V L+H YAS + S +++FD R TW A+INGY +
Sbjct: 117 LGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQL 176
Query: 191 -----KAKDCAFNALV-------LFRDML-----VDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ +++A++ LFR+ L + ++G +P +V L+ + LG L
Sbjct: 177 FDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGAL 236
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+ G +H Y+++ + D +GTAL+DMY+KCGC++ A +F M +++V +T++ +
Sbjct: 237 DQGRWIHAYVDRNRMVL--DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLIS 294
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G+A HG AI + M++ GV PN VTF L +AC GLVEEGL +F +M + +G+E
Sbjct: 295 GLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIE 354
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P ++HY C+VDLLGRAG LE+A + +P++PD+ + +LL+AC VHGDV LG++ +
Sbjct: 355 PVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVEC 414
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
L + + V V LSN+YASA +W DV VRK M+ K+V+ PG S+++
Sbjct: 415 LAERSLDHGGV--------HVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEV 465
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 256/492 (52%), Gaps = 50/492 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + +K+IHA ++ +L + C ++ F PN+
Sbjct: 17 LKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLL---FKQLLHPNI 73
Query: 75 FLFNTLIRCTPPQD------SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
F +N +IR SV V S + D FT+ F + SC + LG
Sbjct: 74 FTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCT---GILCHRLG 130
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-- 186
Q+H V K G F+ + LI Y D+++ KVF++M R +WN++I GY
Sbjct: 131 MQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKL 190
Query: 187 SQSKKAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVC 222
Q A++ C +AL +FR+M + G++P + +++
Sbjct: 191 GQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREM--QMVGIEPDEISIIA 248
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL +QLG LE G +H Y +K ++ + I AL++MY+KCGC+D A +F ++ E
Sbjct: 249 VLPACAQLGALEVGKWIHMYADKNGFLRKTG--ICNALIEMYAKCGCIDEAWNLFDQLVE 306
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+V++W+ M G+A HGKG EAI+L + M V PN +TF + AC H GL +EGL
Sbjct: 307 KDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKY 366
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
FD M + + +EP I+HY C++DLLGR+G L +A + I +PIKPD+ +W SLLS+C +H
Sbjct: 367 FDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHR 426
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ + K L++L+PE S ++V L+N+YA +W DV ++RK ++ KR++
Sbjct: 427 NLQIAVIAVKQLMELEPE--------ESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIK 478
Query: 463 TEPGSSILQTTT 474
PGSS ++
Sbjct: 479 KTPGSSSIEVNN 490
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/462 (34%), Positives = 252/462 (54%), Gaps = 33/462 (7%)
Query: 22 SHIKQIHAQLITNALKS----PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
+ + QI AQLIT+ + S P L A + C A+ + ++ F H PN+F
Sbjct: 2 AQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALI---FAHLASPNIFAH 58
Query: 78 NTLIRCTPPQD----SVLVFAYWVSK-GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
N ++ ++ F + VS D+FT+ L +CA L+ + G++IH
Sbjct: 59 NATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACA---GLAHVVNGQKIH 115
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT--WNAMINGYCSQSK 190
VTK+GF N+ V +LI Y + + +FD+M +R WNAMI GY +Q++
Sbjct: 116 AMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGY-AQNE 174
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
K D A+ +FR M+ GV P D T+V VL + LG L+ G + G++ +
Sbjct: 175 KYSD----AIEVFR-MMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMAL 229
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+F+G AL DMY+KCGC+ A +F++M E++V++W+ + G+A++G +EA
Sbjct: 230 --GLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYE 287
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M DCG KPN V F L AC HAGLV++GL+ F+ M ++GV P ++HY C+VDLL RAG
Sbjct: 288 MLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAG 347
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++A + I +P+KP+ I+W +LL C ++ D G++V + +L+L + S
Sbjct: 348 ELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSD--------HS 399
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V L+N+Y+S R D R +M+ V PG S ++
Sbjct: 400 GSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEV 441
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/503 (32%), Positives = 263/503 (52%), Gaps = 53/503 (10%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
RC L L+ ++ +KQIH IT+ L + + ++L+ Y + + H +F
Sbjct: 5 RCVVGL-LEQCSSMREMKQIHGHAITHGLARFAFISSKLLAFY-----ARSDLRYAHTLF 58
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
+H PNLF +NT+I P S L F ++ + + F+L SL L
Sbjct: 59 SHIPFPNLFDYNTIITAFSPHYSSLFFIQMLNAAV---SPNSRTFSLLLSKSSPSLPFL- 114
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q+H H+ +RG + + V T+L+ Y+++ + +++FDQ P ++ A W +++ GYC
Sbjct: 115 --HQLHSHIIRRGHVSDFYVITSLLAAYSNHGSTRAARRLFDQSPYKNVACWTSLVTGYC 172
Query: 187 SQ--------------SKKAKDCAFNALV--------------LFRDMLVDVSGVKPTDT 218
+ ++ D +++A+V LFR++ VKP ++
Sbjct: 173 NNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFREGIQLFREL--KDRNVKPNNS 230
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
+ VLS + +G E G +H Y+++ ++ +GTAL+D Y+KCGC++ A +F
Sbjct: 231 LLASVLSACASVGAFEEGKWIHAYVDQNKSQCYYELELGTALIDFYTKCGCVEPAQRVFG 290
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M+ K+V W+AM G+AI+ K EA+ L + M G +PNAVTF + AC H L E
Sbjct: 291 NMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLFGE 350
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
L LF M K+G+ I+HY C+VD+L R+G +EEA FI + ++PD ++W SLL+ C
Sbjct: 351 ALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGVIWGSLLNGC 410
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+H ++ LG KVGK L++L+P +V LSN+YA+ +W V RK MK
Sbjct: 411 FLHNNIELGHKVGKYLVELEP--------GHGGRYVLLSNVYATMGKWEAVLETRKFMKD 462
Query: 459 KRVETEPGSSILQTTTHYTLDGF 481
+ V GSS ++ H T+ F
Sbjct: 463 RGVPAVSGSSFIE--IHQTVHKF 483
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 247/451 (54%), Gaps = 25/451 (5%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC- 83
KQ HA+++ L A + C + S +F D P F FNT++R
Sbjct: 5 KQSHARILKXGLFXDSFCASNLVATCAL-SDWGSMDYACSIFRQMDEPGSFZFNTMMRGH 63
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
+++++ + +G+ D+FTY L +CAR ++ G Q+H H+ K G
Sbjct: 64 VKDMNTEEALITYKEMAERGVKP-DNFTYPTLLKACARLPAVEE---GMQVHAHILKLGL 119
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+V V +LI Y +I VF+QM RS A+W+A+I + S + DC L
Sbjct: 120 ENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWS-DC----L 174
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
L DM + + ++ +V VLS + LG L+ G VHG++ + + +V + T+L
Sbjct: 175 RLLGDM-SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRN--VSGLNVIVETSL 231
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
++MY KCG L + +F +M +KN L+++ M +G+A+HG G E +R+ M + G++P+
Sbjct: 232 IEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDD 291
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+ + + AC HAGLV+EGL F+ MK + G+EP I+HY C+VDL+GRAG ++EA I
Sbjct: 292 IVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIK 351
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P++P+ +LWRSLLSA VH ++ GE K L +L + + D+V LSN+Y
Sbjct: 352 SMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQ--------KASDYVVLSNMY 403
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A A+RW DV R M K + PG S+++
Sbjct: 404 AQAQRWEDVARTRTNMFSKGLSQRPGFSLVE 434
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 254/465 (54%), Gaps = 27/465 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L A +TP+ + Q A L+ + L + L + A +V + P +
Sbjct: 29 LAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVAALLRPSVPLDA 88
Query: 75 FLFNTLIRC--TPPQDSVLV----FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
FL NTLIR T P S+ + F + +G + + FT+ F L +CA + G
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDV--G 146
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q H K GF + V+ TLIH Y+ + + VFD+MP S+ TW+AMI GY
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYV 206
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ +A+ LFR+M +GV+ + T++ VL+ ++ LG LE V ++E+
Sbjct: 207 RGGLSS-----DAVELFREM--QANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE 259
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
V + AL+D +KCG +D A+ +F M++++V++WT++ +A+ G+G EA+R
Sbjct: 260 GI--GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVR 317
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ + M+ GV P+ V F + AC HAG+V+EG FD MK ++G+EP I+HY C+VD+
Sbjct: 318 VFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMF 377
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG +E A F+ +PI+P+ ++WRSL+SAC HG + LGE + + LL P
Sbjct: 378 GRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYP------- 430
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+++ LSN++A +RW + +R++M + ++ PG SI++
Sbjct: 431 -AHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVE 474
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 244/463 (52%), Gaps = 29/463 (6%)
Query: 22 SHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
S +KQ+HA + P LY +++QL +S VF + + F++
Sbjct: 119 SQLKQLHAFTLRTTYPEEPATLFLYGKILQL----SSSFSDVNYAFRVFDSIENHSSFMW 174
Query: 78 NTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLIR + +++ +++ + +G + D T+ F L +CA S G+Q+H
Sbjct: 175 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE---GKQVH 231
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ K GF +V V LIH Y S + +KVFD+MP RS +WN+MI+ +
Sbjct: 232 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 291
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPE 251
+AL LFR+M +P TM VLS + LG L G H ++ K
Sbjct: 292 -----SALQLFREMQ---RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 343
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV + +L++MY KCG L A +F M+++++ +W AM G A HG+ EA+ D M
Sbjct: 344 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 403
Query: 312 RDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
D V+PN+VTF L AC H G V +G FD M + +EP ++HY CIVDL+ RA
Sbjct: 404 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 463
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKILLQLQPEVTFVDVAC 428
G++ EA + +M +P+KPDA++WRSLL AC G V L E++ + ++ + + + C
Sbjct: 464 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 523
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V LS +YASA RW DV VRK M + EPG S ++
Sbjct: 524 SGA-YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIE 565
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 164/531 (30%), Positives = 265/531 (49%), Gaps = 74/531 (13%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
LP L K+IT+ ++ Q+H L+ + Y L C +
Sbjct: 29 LPQKTVLKLFDSKSITSLQYLTQLHG-LVLRSGHFQDHYVSGALLKCYANPHFSNFDFAL 87
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
VF+ PN+F++N +I+ + + Y+ G + D F + + CS++
Sbjct: 88 KVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY--GRMVIDARPNKFTYPTLFKACSVA 145
Query: 124 -TLWLGRQIHVHVTKRGFMFNVLVATTLIH--------------FYASNKDI-------- 160
+ GRQIH HV K G +V + + IH FY+ D+
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMID 205
Query: 161 --------SSGKKVFDQMPMRSSATWNAMINGYC------------SQSKKAKDCAFNAL 200
+ K +F QMP+++ +WN MING + + + +++++
Sbjct: 206 GYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSM 265
Query: 201 V--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
V +F+ M + + +P + VL+ S +G ++ G VH Y+++
Sbjct: 266 VDGYISAGRYKEALEIFQQMQREET--RPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ D +GTAL+DMY+KCG LD +F M+E+ + TW AM G+AIHG+ +A+
Sbjct: 324 SI--KLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALE 381
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L +++ +KPN +T + AC HAG V++GL +F M+ +GV+P ++HY C+VDLL
Sbjct: 382 LFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLL 441
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GR+G EA + I +P+KP+A +W +LL AC +HG+ L E+VGKILL+L+P+
Sbjct: 442 GRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQ------ 495
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
S +V LSNIYA R+ DV +RK MK + ++T PG SI L T H
Sbjct: 496 --NSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVH 544
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 164/434 (37%), Positives = 242/434 (55%), Gaps = 55/434 (12%)
Query: 73 NLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+L +NTLI R P++++ +F V G +T D+ T + + A+ L L LG
Sbjct: 185 DLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQ---LRDLELG 241
Query: 129 RQIHVHVTKRGF-----MFNVLVA--------------------------TTLIHFYASN 157
R++H +V G + NV++ TT+I YA
Sbjct: 242 RRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQF 301
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+ +KVFD+MP R WNA++ GY Q K+ K+ AL LF DM + V+P D
Sbjct: 302 GLMDDARKVFDEMPERDVFPWNALMTGYV-QCKRGKE----ALRLFHDM--QEAMVEPDD 354
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
TMV +LS SQLG LE G VH Y+++ V +GT LVDMYSKCG ++ A+ +F
Sbjct: 355 ITMVNLLSACSQLGALEMGMWVHHYIDRRRV--SLSVMLGTNLVDMYSKCGNIEKAIRVF 412
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
+ EKN LTWTAM +G+A HG + AI+ M + G++P+ +TF + +ACCHAGLV+
Sbjct: 413 KEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVK 472
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
EG F M SK+ +E +KHYSC+VDLLGRAG+L+EA + + +P++PDA++W +L A
Sbjct: 473 EGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFA 532
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C +HG++ LGEK L++L P + + +V L+N+YA A + VR M+
Sbjct: 533 CRMHGNITLGEKAAMKLVELDPGDSGI--------YVLLANMYAEANMRKKADKVRVMMR 584
Query: 458 VKRVETEPGSSILQ 471
VE PG S ++
Sbjct: 585 HLGVEKVPGCSCIE 598
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 213/486 (43%), Gaps = 85/486 (17%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNAL---KSP-PLYAQLIQLYC---TKKASPQSTKIV 62
A+L + + + Q+HA L+T L +SP PL ++L++ + SP+
Sbjct: 10 LAILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRPLLHA 69
Query: 63 HFVFTHF-DPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF--------------DDF 107
+ PP+ +P ++ + +GL+T D
Sbjct: 70 LALLASLPTPPD--------SASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSARPDHL 121
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ F L +CAR L G + +V GF +V V +HF A ++ +K+F
Sbjct: 122 TFPFLLKACAR---LQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLF 178
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D +R +WN +I GY + + AL +F M+ D V P + TM+ V+S S
Sbjct: 179 DGSHVRDLVSWNTLIGGYVRRGVPRE-----ALEMFWRMVGD-GAVTPDEVTMIGVVSGS 232
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL----------------- 270
+QL LE G +HGY+E + V + ++DMY KCG L
Sbjct: 233 AQLRDLELGRRLHGYVES--HGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVS 290
Query: 271 --------------DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
D+A +F M E++V W A+ TG +G EA+RL M++ V
Sbjct: 291 WTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMV 350
Query: 317 KPNAVTFTSLFAACCHAGLVEEGL---HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
+P+ +T +L +AC G +E G+ H D + V + + +VD+ + G++E
Sbjct: 351 EPDDITMVNLLSACSQLGALEMGMWVHHYIDRRR----VSLSVMLGTNLVDMYSKCGNIE 406
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQP-EVTFVDV--AC 428
+A IP K +A+ W +++S HG DVA+ I L LQP E+TF+ V AC
Sbjct: 407 KAIRVFKEIPEK-NALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSAC 465
Query: 429 TSEDFV 434
V
Sbjct: 466 CHAGLV 471
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 119/241 (49%), Gaps = 17/241 (7%)
Query: 65 VFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF ++F +N L ++C ++++ +F + + + ++ DD T V L +C++
Sbjct: 310 VFDEMPERDVFPWNALMTGYVQCKRGKEALRLF-HDMQEAMVEPDDITMVNLLSACSQ-- 366
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L +G +H ++ +R +V++ T L+ Y+ +I +VF ++P +++ TW A
Sbjct: 367 -LGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTA 425
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+G + A A+ F+ M+ G++P + T + VLS GL++ G
Sbjct: 426 MISGLANHGH-----ADVAIKYFQRMI--ELGLQPDEITFIGVLSACCHAGLVKEGQEFF 478
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHG 299
M +++ E + + +VD+ + G LD A + + M E + + W A+ +HG
Sbjct: 479 SLMVSKYHL-ERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHG 537
Query: 300 K 300
Sbjct: 538 N 538
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 244/446 (54%), Gaps = 24/446 (5%)
Query: 26 QIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC- 83
++H ++ N P A +LI +Y + + K VF ++++N L R
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK----VFDKTRKRTIYVWNALFRAL 153
Query: 84 --TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC-ARFCSLSTLWLGRQIHVHVTKRGF 140
+ VL + +++ + D FTY + L +C A C+ L G++IH H+T+RG+
Sbjct: 154 TLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGY 213
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+V + TTL+ YA + VF+ MP+R+ +W+AMI Y K AF AL
Sbjct: 214 NSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGK-----AFEAL 268
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
FR+M+ + P TMV VL + L LE G +HGY+ + ++ + + +AL
Sbjct: 269 RTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGL--DSILPVISAL 326
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
V MY +CG LD +F RM +++V++W ++ + +HG G +AI++ + M G P
Sbjct: 327 VTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTP 386
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF S+ AC H GLVEEG LF++M G++P ++HY+C+VDLLGRA L+EA +
Sbjct: 387 VTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQ 446
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ +P +W SLL +C +HG+V L E+ + L L+P+ + ++V L++IY
Sbjct: 447 DMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK--------NAGNYVLLADIY 498
Query: 441 ASAERWPDVESVRKQMKVKRVETEPG 466
A A+ W +V+ V+K ++ + ++ PG
Sbjct: 499 AEAQMWDEVKRVKKLLEHRGLQKLPG 524
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 155/341 (45%), Gaps = 31/341 (9%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY + C SLS G ++H H+ G + +AT LI Y+ + +KVF
Sbjct: 79 TYELLILCCGHRSSLSD---GLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVF 135
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS-- 225
D+ R+ WNA+ + L L+ M + GV+ T VL
Sbjct: 136 DKTRKRTIYVWNALFRALTLAGHGEE-----VLGLYWKM--NRIGVESDRFTYTYVLKAC 188
Query: 226 VSSQLGL--LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
V+S+ L G +H ++ + Y + V+I T LVDMY++ GC+D A +F+ M +
Sbjct: 189 VASECTADHLTKGKEIHAHLTRRGY--NSHVYIMTTLVDMYARFGCVDYASYVFNGMPVR 246
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
NV++W+AM A +GK EA+R M PN+VT S+ AC +E+G
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG-R 305
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
L + G++ + S +V + GR G L+ + + D + W SL+S+ VH
Sbjct: 306 LIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDR-DVVSWNSLISSYGVH 364
Query: 402 GDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFV 434
G G K +I ++ VTFV V AC+ E V
Sbjct: 365 G---YGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 165/456 (36%), Positives = 245/456 (53%), Gaps = 30/456 (6%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKK-ASPQSTKIVHFVFTHFDPP-NLFLFNTLI 81
+ Q+HA + + L + P + CTK+ A+P VF P ++ +NTL+
Sbjct: 35 LAQLHAAAVKSGLGAHPALVTRLLTLCTKQGAAPAHLAYARQVFDRIPTPGDVVWYNTLL 94
Query: 82 R-----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
R ++ V A + +G+ D +T+V L +CA + GRQ H
Sbjct: 95 RGYARSSDGAAEAARVLARMLEEGVAP-DTYTFVSLLKACA---AARAGEEGRQAHGVAV 150
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA-TWNAMINGYCSQSKKAKDC 195
K G + V TLI+ YA D S + +F ++P ++NAMI S+ +
Sbjct: 151 KTGAADHEYVLPTLINMYAECGDARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGE-- 208
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
ALVLFR+M G+KPT T+ VLS + LG LE G +H Y+ K ++ V
Sbjct: 209 ---ALVLFREM--QAKGLKPTSVTVTSVLSACALLGALELGRWIHEYVRKAGL--DSLVK 261
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ TAL+DMY KCG L++A+ +F M ++ W+ M A H G EAI L + M+ G
Sbjct: 262 VNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQG 321
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
++P+AVTF + AC H+G+V EGL FD+M+ ++G+ P IKHY C+ DLL R+G LE+A
Sbjct: 322 IRPDAVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVPGIKHYGCVTDLLARSGQLEKA 380
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +PI+P AILWR+LLSAC HG V LG++V + +L+L D+V
Sbjct: 381 YKFIDELPIQPTAILWRTLLSACGSHGAVDLGKRVFERILELDD--------THGSDYVI 432
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SN+ A+ +W ++ VRK M K V PG S ++
Sbjct: 433 FSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIE 468
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 178/521 (34%), Positives = 268/521 (51%), Gaps = 81/521 (15%)
Query: 18 ITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTK-IVHF---VFTHFDPP 72
IT +KQIHA +I N L S +L+ P +T ++ + +F P
Sbjct: 11 ITNVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQP 70
Query: 73 NLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ F++NT IR + P +V ++A + + D+FT+ F L +C + ++T G
Sbjct: 71 DTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKP-DNFTFPFVLKACTKLFWVNT---G 126
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHF-------------------------------YASN 157
+H V + GF NV+V TL+ F YA
Sbjct: 127 SAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQR 186
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA-----------KD-CAFNALV---- 201
D+S +K+FD+MP R +WN MI Y + KD ++NAL+
Sbjct: 187 GDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYV 246
Query: 202 ---LFRDMLV---DVSGVK--PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
L R+ L ++ GV P + TM+ +LS + LG LE G VH K M +
Sbjct: 247 LRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHA---KIIEMNKGK 303
Query: 254 V--FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ +G ALVDMY+KCG + A+ +F +R+K+V++W ++ +G+A HG E++ L M
Sbjct: 304 LSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREM 363
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ V P+ VTF + AAC HAG V+EG F MK+K+ +EP I+H C+VD+LGRAG
Sbjct: 364 KMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGL 423
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L+EA+NFI + I+P+AI+WRSLL AC VHGDV L ++ + LL+++ + S
Sbjct: 424 LKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGD--------QSG 475
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
D+V LSN+YAS W E+VRK M V GSS ++
Sbjct: 476 DYVLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVEA 516
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 252/501 (50%), Gaps = 74/501 (14%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
H+KQIH++ I + P+ I +C + +F P++F +N +
Sbjct: 29 HLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMC-YARQLFDTIPEPSVFSWNIMFK 87
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R P+ V ++ + + + D +TY F R +L LGR++H HV K
Sbjct: 88 GYSRIACPKLGVSLYLEMLERNVKP-DCYTYPFLFKGFTRSVALQ---LGRELHCHVVKY 143
Query: 139 GFMFNVLVATTLIHFYA------------------------------------------- 155
G NV LI+ Y+
Sbjct: 144 GLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAI 203
Query: 156 -----SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
+ + + +K F +MP R +W AMI+GY +C AL+LFR+M
Sbjct: 204 VTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRL-----NCYKEALMLFREM--QT 256
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
S +KP + TMV VL+ +QLG LE G + Y++K +ND F+G AL+DMY KCG +
Sbjct: 257 SKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKN--KVKNDTFVGNALIDMYFKCGNV 314
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+ AL IF+ + +++ TWTAM G+AI+G G EA+ + M V P+ VT+ + +AC
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H G+V+EG F +M ++ G+EP+I HY C+VDLLG+AGHL+EA+ I +P+KP++I+
Sbjct: 375 THTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIV 434
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W +LL AC +H D + E+ + +L+L+P V +V NIYA+ +W +
Sbjct: 435 WGALLGACRIHKDAEMAERAIEQILELEPNNGAV--------YVLQCNIYAACNKWDKLR 486
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+R+ M + ++ PG S+++
Sbjct: 487 ELRQVMMDRGIKKTPGCSLIE 507
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 254/471 (53%), Gaps = 26/471 (5%)
Query: 3 SLPGHRCFALLKL--KAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQST 59
S P + + LL L ++ S ++H ++ N P A +LI +Y + +
Sbjct: 73 SSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR 132
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
K VF ++++N L R + VL + +++ + D FTY + L +C
Sbjct: 133 K----VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188
Query: 117 -ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
A C+++ L G++IH H+T+RG+ +V + TTL+ YA + VF MP+R+
Sbjct: 189 VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNV 248
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+W+AMI Y K AF AL FR+M+ + P TMV VL + L LE
Sbjct: 249 VSWSAMIACYAKNGK-----AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +HGY+ + ++ + + +ALV MY +CG L+ +F RM +++V++W ++ +
Sbjct: 304 GKLIHGYILRRGL--DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG G +AI++ + M G P VTF S+ AC H GLVEEG LF+ M G++P
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ 421
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY+C+VDLLGRA L+EA + + +P +W SLL +C +HG+V L E+ + L
Sbjct: 422 IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
L+P+ + ++V L++IYA A+ W +V+ V+K ++ + ++ PG
Sbjct: 482 ALEPK--------NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 244/463 (52%), Gaps = 29/463 (6%)
Query: 22 SHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
S +KQ+HA + P LY +++QL +S VF + + F++
Sbjct: 53 SQLKQLHAFTLRTTYPEEPATLFLYGKILQL----SSSFSDVNYAFRVFDSIENHSSFMW 108
Query: 78 NTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLIR + +++ +++ + +G + D T+ F L +CA S G+Q+H
Sbjct: 109 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE---GKQVH 165
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ K GF +V V LIH Y S + +KVFD+MP RS +WN+MI+ +
Sbjct: 166 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 225
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPE 251
+AL LFR+M +P TM VLS + LG L G H ++ K
Sbjct: 226 -----SALQLFREMQ---RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 277
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV + +L++MY KCG L A +F M+++++ +W AM G A HG+ EA+ D M
Sbjct: 278 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 337
Query: 312 RDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
D V+PN+VTF L AC H G V +G FD M + +EP ++HY CIVDL+ RA
Sbjct: 338 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 397
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKILLQLQPEVTFVDVAC 428
G++ EA + +M +P+KPDA++WRSLL AC G V L E++ + ++ + + + C
Sbjct: 398 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 457
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V LS +YASA RW DV VRK M + EPG S ++
Sbjct: 458 SGA-YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIE 499
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 244/463 (52%), Gaps = 29/463 (6%)
Query: 22 SHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
S +KQ+HA + P LY +++QL +S VF + + F++
Sbjct: 62 SQLKQLHAFTLRTTYPEEPATLFLYGKILQL----SSSFSDVNYAFRVFDSIENHSSFMW 117
Query: 78 NTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLIR + +++ +++ + +G + D T+ F L +CA S G+Q+H
Sbjct: 118 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE---GKQVH 174
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ K GF +V V LIH Y S + +KVFD+MP RS +WN+MI+ +
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 234
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPE 251
+AL LFR+M +P TM VLS + LG L G H ++ K
Sbjct: 235 -----SALQLFREMQ---RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 286
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV + +L++MY KCG L A +F M+++++ +W AM G A HG+ EA+ D M
Sbjct: 287 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 346
Query: 312 RDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
D V+PN+VTF L AC H G V +G FD M + +EP ++HY CIVDL+ RA
Sbjct: 347 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 406
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKILLQLQPEVTFVDVAC 428
G++ EA + +M +P+KPDA++WRSLL AC G V L E++ + ++ + + + C
Sbjct: 407 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 466
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V LS +YASA RW DV VRK M + EPG S ++
Sbjct: 467 SGA-YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIE 508
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 254/465 (54%), Gaps = 27/465 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L A +TP+ + Q A L+ + L + L + A +V + P +
Sbjct: 29 LAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLDPLVTALLRPSVPLDA 88
Query: 75 FLFNTLIRC--TPPQDSVLV----FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
FL NTLIR T P S+ + F + +G + + FT+ F L +CA + G
Sbjct: 89 FLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDV--G 146
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q H K GF + V+ TLIH Y+ + + VFD+MP S+ TW+AMI GY
Sbjct: 147 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYV 206
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ +A+ LFR+M +GV+ + T++ VL+ ++ LG LE V ++E+
Sbjct: 207 RGGLSS-----DAVDLFREM--QANGVQADEVTVIGVLAAATDLGALELARWVRRFVERE 259
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
V + AL+D +KCG +D A+ +F M++++V++WT++ +A+ G+G EA+R
Sbjct: 260 GI--GKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVR 317
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ + M+ GV P+ V F + AC HAG+V+EG FD MK ++G+EP I+HY C+VD+
Sbjct: 318 VFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMF 377
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG +E A F+ +PI+P+ ++WRSL+SAC HG + LGE + + LL P
Sbjct: 378 GRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYP------- 430
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+++ LSN++A +RW + +R++M + ++ PG SI++
Sbjct: 431 -AHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVE 474
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 261/492 (53%), Gaps = 58/492 (11%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+ +K+ HA +I AL +S L ++I + C + + F+F PN +L+N +
Sbjct: 2 AELKKNHALVIKYALSQSNFLVTKMIDV-CDRN---EDMDYASFLFKEVIDPNAYLYNAM 57
Query: 81 IR-CTPPQDSVLVFAYW-----------VSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
IR CT L ++ S+ L+ D+FT+ F + +CAR L LG
Sbjct: 58 IRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACAR---LGLHNLG 114
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-- 186
+Q+H K G +++ LI Y ++ +FD+M R + +WN +I+G+
Sbjct: 115 KQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRL 174
Query: 187 SQSKKAK------------------------DCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
Q ++A+ +AL +FR+M ++G++P + +++
Sbjct: 175 GQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREM--QIAGIEPDEASIIS 232
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL ++LG LE G +H + + + I AL++MY+KCGC+D A +F +MR
Sbjct: 233 VLPACAKLGALETGKWIHMFCARNGLLRR--TCICNALIEMYTKCGCIDQACQLFDQMRG 290
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++V++W+ M G+A HGK EAI + + M+ +KPN +TF L +AC HAG EEGL
Sbjct: 291 RDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMY 350
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
FD MK + +EP I+HY +VDLLGRAG L +A + + +P+KPD+ +W SLLS+C H
Sbjct: 351 FDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHC 410
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ + + L +L+P+ T ++V LSNIYA +W DV +RK ++ KR++
Sbjct: 411 NIEVAVIAMEHLEELEPDDT--------GNYVLLSNIYADLGKWDDVSRMRKLVRSKRMK 462
Query: 463 TEPGSSILQTTT 474
PG S+++
Sbjct: 463 KTPGCSLIEVNN 474
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 245/465 (52%), Gaps = 32/465 (6%)
Query: 15 LKAITTPSHIK---QIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L A T P ++ ++H +++ L+ P + L+ +Y A +F
Sbjct: 155 LNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMY----AKCGDISKARVIFDRLP 210
Query: 71 PPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
N+ + LI Q D L + + + + T+ L C + + L
Sbjct: 211 EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT---TPAALEH 267
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H ++ + G+ + V +LI Y + +K+F +P R TW AM+ GY
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQ 327
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
D A N LFR M G+KP T VL+ S L+ G +H +
Sbjct: 328 LG--FHDEAIN---LFRRM--QQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAG 380
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM-AIHGKGNEAIR 306
Y DV++ +ALV MY+KCG +D+A L+F++M E+NV+ WTA+ TG A HG+ EA+
Sbjct: 381 Y--NLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALE 438
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
D M+ G+KP+ VTFTS+ +AC H GLVEEG F +M +G++P ++HYSC VDLL
Sbjct: 439 YFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLL 498
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAGHLEEA N I+ +P P +W +LLSAC VH DV GE+ + +L+L P+
Sbjct: 499 GRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPD------ 552
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+VALS+IYA+A R+ D E VR+ M+ + V EPG S ++
Sbjct: 553 --DDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIE 595
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 147/287 (51%), Gaps = 18/287 (6%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L CAR SL GR++H + K G N + TL+ YA ++ ++VFD +
Sbjct: 54 LQECARLRSLEQ---GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRD 110
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R+ +W AMI + + +K A + M ++G KP T V +L+ + L
Sbjct: 111 RNIVSWTAMIEAFVAGNKN-----LEAFKCYETM--KLAGCKPDKVTFVSLLNAFTNPEL 163
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L+ G VH ME E + +GT+LV MY+KCG + A +IF R+ EKNV+TWT +
Sbjct: 164 LQLGQKVH--MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLI 221
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKW 350
G A G+ + A+ LL++M+ V PN +TF S+ C +E G +H + ++S +
Sbjct: 222 AGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRY-IIQSGY 280
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G E + + ++ + + G LEEA +P + D + W ++++
Sbjct: 281 GRELWV--VNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAMVTG 324
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 108/214 (50%), Gaps = 11/214 (5%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+L ++L LE G VH + K+ P ++ L+ MY+KCG L +A +F +R+
Sbjct: 53 LLQECARLRSLEQGREVHAAILKSGIQPNR--YLENTLLSMYAKCGSLTDARRVFDSIRD 110
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+N+++WTAM K EA + ++M+ G KP+ VTF SL A + L++ G +
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170
Query: 343 -FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ +++ +EP + + +V + + G + +A +P K + + W L++
Sbjct: 171 HMEIVEAGLELEPRVG--TSLVGMYAKCGDISKARVIFDRLPEK-NVVTWTLLIAGYAQQ 227
Query: 402 GDVALGEKVGKILLQLQ---PEVTFVDV--ACTS 430
G V + ++ + + Q + ++TF + CT+
Sbjct: 228 GQVDVALELLETMQQAEVAPNKITFASILQGCTT 261
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 238/434 (54%), Gaps = 23/434 (5%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF 104
L+ LY + ++ + H P F+ + + +++V +F + + +
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ-MRRAFVLP 241
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ FT+ L SCA S+ L LG+Q+H HV K G NV V+ L+ YA + +
Sbjct: 242 NQFTFASVLQSCA---SIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+F ++P R+ TWN MI GY K AL L+++ML V+ ++ T VL
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDK-----ALSLYKNMLE--CQVQASEVTYSSVL 351
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L +E G +H KT Y + DV +G AL+DMY+KCG + NA L+F + E++
Sbjct: 352 RACASLAAMELGTQIHSLSLKTIY--DKDVVVGNALIDMYAKCGSIKNARLVFDMLSERD 409
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W AM +G ++HG EA++ M++ PN +TF S+ +AC +AGL++ G + F
Sbjct: 410 EISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFK 469
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M +G+EP ++HY+C+V LLGR+GHL++A I IP++P+ +WR+LL AC +H DV
Sbjct: 470 SMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDV 529
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG + +LQ+ P+ V LSNIYA RW V SVRK MK K V+ E
Sbjct: 530 DLGIMSAQQILQIDPQ--------DEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKE 581
Query: 465 PGSSIL--QTTTHY 476
PG S + Q HY
Sbjct: 582 PGLSWIENQGIVHY 595
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 178/359 (49%), Gaps = 20/359 (5%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
QDS+ +FA G + FT+ L +C L +G+ +H V K + ++ V
Sbjct: 124 QDSLQLFAEMRMVGF-NPNHFTFAGVLKACI---GLEAFSVGKSVHGCVLKTCYEMDLYV 179
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
L+ Y D + +VF++MP W+ MI+ Y +QS ++++ A+ LF M
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRY-AQSNQSRE----AVELFGQM 234
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
+ V P T VL + + L+ G VH ++ K + +VF+ AL+D+Y+K
Sbjct: 235 --RRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGL--DGNVFVSNALMDVYAK 290
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG LDN++ +F + +N +TW M G G G++A+ L +M +C V+ + VT++S+
Sbjct: 291 CGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSV 350
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC +E G + ++ K + + + ++D+ + G ++ A + + +
Sbjct: 351 LRACASLAAMELGTQIH-SLSLKTIYDKDVVVGNALIDMYAKCGSIKNA-RLVFDMLSER 408
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQ---PEVTFVDV--ACTSEDFVALSNIY 440
D I W +++S ++HG V K +++ + + ++TFV + AC++ + + Y
Sbjct: 409 DEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNY 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 147/309 (47%), Gaps = 16/309 (5%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
L +H + K G N V T LI YA ++S ++ FD + + +W M+ Y
Sbjct: 59 LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY- 117
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+++ + +D +L LF +M + G P T VL L G VHG + KT
Sbjct: 118 AENDRFQD----SLQLFAEM--RMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKT 171
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
Y E D+++G L+D+Y+K G ++ L +F M + +V+ W+ M + A + EA+
Sbjct: 172 CY--EMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVE 229
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L MR V PN TF S+ +C ++ G + ++ K G++ ++ + ++D+
Sbjct: 230 LFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL-KVGLDGNVFVSNALMDVY 288
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ---PEVTF 423
+ G L+ + M +P + + + W +++ GD + K +L+ Q EVT+
Sbjct: 289 AKCGRLDNSMKLFMELPNR-NEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTY 347
Query: 424 VDV--ACTS 430
V AC S
Sbjct: 348 SSVLRACAS 356
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 27/235 (11%)
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP R++ ++ +I GY QS + + + LF + + + P T + L VS +
Sbjct: 1 MPDRNTVSFVTLIQGYV-QSFQLDE----VVDLFSRVHREGHELNPFVFTTILKLLVSVE 55
Query: 230 LGLLEFG--ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
L + AC++ E++ F+GTAL+D Y+ CG +++A F + K++++
Sbjct: 56 CAELAYSLHACIYKLGH------ESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVS 109
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WT M A + + ++++L MR G PN TF + AC GL F K
Sbjct: 110 WTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGK 162
Query: 348 SKWG------VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
S G E + ++DL + G + +P K D I W ++S
Sbjct: 163 SVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMIS 216
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 167/471 (35%), Positives = 248/471 (52%), Gaps = 36/471 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKK--ASPQSTKIVHFVFTHF-DP 71
L TT + Q+HA + + L++ P + + CT + A P VF P
Sbjct: 38 LPQCTTLRALAQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGP 97
Query: 72 PNLFLFNTLIR----CT-------PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
++ +NTL+R C+ P +++ VF + +G+ D +T+V L +CA
Sbjct: 98 GDVVWYNTLLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAP-DTYTFVSLLKACA--- 153
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ GRQ H K G + V TLI+ YA D + + +F ++ ++NA
Sbjct: 154 AARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNA 213
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI S+ + ALVLFR+M G+K T T++ VLS + LG LE G +H
Sbjct: 214 MITAAVRSSRPGE-----ALVLFREM--QAKGLKLTSVTLISVLSACALLGALELGRWIH 266
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+ K ++ V + TAL+DMY KCG L++A+ +F M ++ W+ M A H
Sbjct: 267 EYVRKV--QLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSY 324
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EAI L + M+ G+KP+ VTF + AC H+GLV EGL FD+M+ ++G+ P IKHY
Sbjct: 325 GREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYG 383
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+ DLL R+G L+ AY FI +PIKP AILWR+LLSAC GD LG++V + +L+L
Sbjct: 384 CVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDS 443
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V SN+ A+ RW ++ VRK M K V PG S ++
Sbjct: 444 --------HGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIE 486
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 164/493 (33%), Positives = 250/493 (50%), Gaps = 56/493 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T + +KQ+HA + L+ + TK P VF + PN
Sbjct: 46 LHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDP-YPRLVFQQVEYPNP 104
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+ LIR P +SVL++ +G+ FT+ L +C+ ++ LGRQ
Sbjct: 105 FLWTALIRGYALQGPFMESVLLYNSMRRQGIGPV-SFTFTALLKACSAALDVN---LGRQ 160
Query: 131 IHVH-VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM------------------- 170
+H + GF ++ V TLI Y + G +VFD+M
Sbjct: 161 VHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVG 220
Query: 171 ------------PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
PM+ W AM+ GY +Q+ + ++ AL +F M +GVK +
Sbjct: 221 NMEAASELFDGLPMKDMVAWTAMVTGY-AQNARPRE----ALEVFERM--QAAGVKTDEV 273
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+V V+S +QLG ++ V E++ + P ++V +G+AL+DMY+KCG +++A +F
Sbjct: 274 TLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
RM E+NV ++++M G A+HG A+ L D M +KPN VTF + AC HAG+VE+
Sbjct: 334 RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQ 393
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G LF M+ GV P HY+C+VDLLGRAG LEEA N + +P+ P +W +LL AC
Sbjct: 394 GQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGAC 453
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+HG+ + + L +L+P +++ LSNIYASA RW DV VRK M+
Sbjct: 454 RIHGNPDMAQIAASHLFELEPNGI--------GNYILLSNIYASAGRWDDVSKVRKLMRA 505
Query: 459 KRVETEPGSSILQ 471
K ++ PG S ++
Sbjct: 506 KGLKKNPGCSWVE 518
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 252/468 (53%), Gaps = 27/468 (5%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
C +LLK + KQ HA+++ L A + C + S +F
Sbjct: 33 ECVSLLK--KCSNMEEFKQSHARILKLGLFGDSFCASNLVATCAL-SDWGSMDYACSIFR 89
Query: 68 HFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
D F FNT++R +++++ + +G+ D+FTY L +CAR ++
Sbjct: 90 QMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKP-DNFTYPTLLKACARLPAVE 148
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G Q+H H+ K G +V V +LI Y +I VF+QM RS A+W+A+I
Sbjct: 149 E---GMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALIT 205
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
+ S + DC L L DM + + ++ +V VLS + LG L+ G VHG++
Sbjct: 206 AHASLGMWS-DC----LRLLGDM-SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFL 259
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ + +V + T+L++MY KCG L + +F +M +KN L+++ M +G+A+HG G E
Sbjct: 260 LRN--VSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
+R+ M + G++P+ + + + AC HAGLV+EGL F+ MK + G+EP I+HY C+V
Sbjct: 318 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMV 377
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DL+GRAG ++EA I +P++P+ +LWRSLLSA VH ++ GE K L +L +
Sbjct: 378 DLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQ--- 434
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V LSN+YA A+RW DV R M K + PG S+++
Sbjct: 435 -----KASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVE 477
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 169/520 (32%), Positives = 259/520 (49%), Gaps = 83/520 (15%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF 75
++ TT +KQIHA +I S + + +Y + A + H +F H P+ F
Sbjct: 21 RSCTTIGTLKQIHASMIVKGFNSNTSALREL-IYASSIAISGTMAYAHQLFPHITEPDTF 79
Query: 76 LFNTLIR---------------------CTPPQDSVLVFAY-------WVSKGL------ 101
++NT+IR C P F WV G
Sbjct: 80 MWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRV 139
Query: 102 --LTFDDFTYV-----FALGSCARFCSLSTLWLG-----------------RQIHVHVTK 137
L F+ T+V + +C L+ G R+ + V +
Sbjct: 140 FRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVAR 199
Query: 138 RGF----MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKK 191
+ F + +++ +I YA ++ S +K+FD++P R TWNAMI GY C +++
Sbjct: 200 QLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQ 259
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
A L +F +M G P + TM+ +LS + LG L+ G +H + + + +
Sbjct: 260 A-------LEMFEEM--RSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFR-D 309
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
V +G AL+DMY+KCG + AL +F MREK+V TW ++ G+A HG ++I L M
Sbjct: 310 LSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEM 369
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
R ++P+ +TF + AC HAG VEEG FD M+ ++ +EP+I+HY C+VDLLGRAG
Sbjct: 370 RKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGL 429
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L EA++FI + I+P+AI+WR+LL AC +HG+V LG + LL+++ + S
Sbjct: 430 LNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHD--------ESG 481
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V LSNIYAS W VE VRK M V E G S+++
Sbjct: 482 DYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 521
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 252/455 (55%), Gaps = 24/455 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
+K+ T S + QIHA +IT + P+ + L L T A + +F P +
Sbjct: 34 IKSCTHKSQLLQIHAHIITTSSIQDPIVS-LRFLTRTASAPFRDLGYSRRLFDLLTNPFV 92
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+N ++R P + + ++ +G+ D + FA+ SC + SL G Q
Sbjct: 93 SHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRA-DPLSSSFAVKSCIKLLSL---LFGIQ 148
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH + G + L+ T+++ Y+ K+FD++P + WN +I+ +++K
Sbjct: 149 IHARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCL-TRNK 207
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ +D AL LF M +P T + +L + L LEFG +HGY+++ Y
Sbjct: 208 RTRD----ALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNT 263
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E++ + +L+ MYS+CG +D A +F +M EKNV++W+AM +G++++G G EAI
Sbjct: 264 ESN--LCNSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWE 321
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M+ GV+P TFT++ +AC H GLV+EG+ FD M+ ++ + P++ HY CIVDLLGRAG
Sbjct: 322 MQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAG 381
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY IM + ++PDA +WR+LL AC +HG LGE++ + L++L+ + +
Sbjct: 382 MLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQ--------EA 433
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
D+V L NIY+SA W V +RK MK K + T P
Sbjct: 434 GDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTP 468
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 169/469 (36%), Positives = 252/469 (53%), Gaps = 33/469 (7%)
Query: 13 LKLKAITTPSHIK---QIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFT 67
L LKA+ I+ QIHA+ I + +Y L++LY S V VF
Sbjct: 115 LVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSV----CGSIHDVQKVFD 170
Query: 68 HFDPPNLFLFNTLIRCTPPQD--SVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLST 124
+L + TLI+ S V A+ L L D T V L +C+ +L
Sbjct: 171 ECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACS---NLGD 227
Query: 125 LWLGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
L LG+++H ++ M +V V L+ Y D++S KVFD+MP+++ TWNAMI+
Sbjct: 228 LNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMIS 287
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
G Q + + AL FR M+ D GVKP + T+V VL+ + LG+LE G VH YM
Sbjct: 288 GLAYQGRYRE-----ALDTFR-MMQD-KGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYM 340
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ + D F+G AL+DMY+KCG +D A +F M+ ++V ++TAM G+A+HG+ N
Sbjct: 341 RRNHILA--DKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANW 398
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A ++ M G++PN VTF L AC H GLV EG F M K+ + P +HY C++
Sbjct: 399 AFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMI 458
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLLGRAG ++EA I + I+PD +LL AC +HG+V +GE V + L +L P+
Sbjct: 459 DLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPD--- 515
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ ++N+Y+S RW D +RK MK K++ PG S+++
Sbjct: 516 -----EEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEV 559
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 208/438 (47%), Gaps = 25/438 (5%)
Query: 15 LKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L + + SH+KQIH I T +L P L +LI L + +SP I + TH
Sbjct: 13 LNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQ 72
Query: 74 --LFLFNTLIRCTPPQDSVLVFAYWVSKGL---LTFDDFTYVFALGSCARFCSLSTLWLG 128
L L N +IR L ++++ L L D FT L + A + G
Sbjct: 73 FCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIRE---G 129
Query: 129 RQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
+QIH K G + FNV V+ TL+ Y+ I +KVFD+ P R +W +I +
Sbjct: 130 QQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTK 189
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
++ A A + D+ + G T+V VLS S LG L G VH Y+
Sbjct: 190 AGLYSR--AVEAFMEMCDLRLRADG-----RTLVVVLSACSNLGDLNLGQKVHSYIRHYI 242
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
M + DVF+G AL+DMY KC L++A +F M KNV+TW AM +G+A G+ EA+
Sbjct: 243 DM-KADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDT 301
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M+D GVKP+ VT + +C + G++E G + M+ + + ++D+
Sbjct: 302 FRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVG-NALLDMYA 360
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--LQP-EVTFV 424
+ G ++EA+ + + D + +++ +HG+ +V + + ++P EVTF+
Sbjct: 361 KCGSIDEAFRVFESMK-RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFL 419
Query: 425 DV--ACTSEDFVALSNIY 440
+ AC+ VA Y
Sbjct: 420 GLLMACSHGGLVAEGKKY 437
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 264/468 (56%), Gaps = 42/468 (8%)
Query: 24 IKQIHAQLITNALKSPPLYAQ---LIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNT 79
++QIHA+++T+ PP+ + + ++ SP + +F+ P +F +N+
Sbjct: 4 LRQIHARILTHV---PPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNS 60
Query: 80 LIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+IR P ++ + +F V KG + FT F L +C+ +L G+QIH
Sbjct: 61 VIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEE---GKQIHAQ 117
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+ + GF + V ++L++FY+ ++I+ +KVFD++ R+ W+AM++GY A+
Sbjct: 118 ILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGY------ARL 171
Query: 195 CAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
N AL++FR+M V G++P + ++V VLS + +G L+ G VH Y++K M D
Sbjct: 172 GMINEALIMFREM--QVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKR--MIHVD 227
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+ + TAL++MY+KCGC++ A IF MR K+ W++M G+AIHG +A+ + M +
Sbjct: 228 LELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEE 287
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
KPN VTF + +AC H GLV +G + +M + G+EP ++HY C+VDLL R G ++
Sbjct: 288 AQAKPNHVTFIGILSACAHGGLVSDGKRYWSSM-LELGIEPSMEHYGCMVDLLCRGGLID 346
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EAY+F + IP PD ++WR+LL A + + E V LL+L+P +E++
Sbjct: 347 EAYDFALIIP-TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEP--------WKAENY 397
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDGF 481
+ L+N+YAS + V VRK MK ++ PG + ++ +DGF
Sbjct: 398 IILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIE------VDGF 439
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/455 (34%), Positives = 245/455 (53%), Gaps = 27/455 (5%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNTLIR 82
++Q+HA ++T L L ++ SP + VF PN+F +N+LI+
Sbjct: 4 LRQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIK 63
Query: 83 C-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
T ++ + +F G + FT F L +CA + G Q+H HV K
Sbjct: 64 GYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGE---GLQVHSHVLK 120
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF ++ V T+L++FY ++I +KVF++MP+R+ W AMI+G+ A D
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVG--AVD--- 175
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A+ LFR+M +G++P T+V V+S + G L+ G +H Y+EK F + D+ +
Sbjct: 176 EAMELFREM--QKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVL--TDLELS 231
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
TALVDMY+KCGC++ A +F M K+ W++M G A HG +AI M + V
Sbjct: 232 TALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVT 291
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ VTF ++ +AC H GLV G + M ++G+EP ++HY C VDLL R+G +EEAY
Sbjct: 292 PDHVTFLAVLSACAHGGLVSRGRRFWSLM-LEFGIEPSVEHYGCKVDLLCRSGLVEEAYR 350
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
+ I P+A WRSLL C + LGE V + LL+L+P +E+++ +S
Sbjct: 351 ITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEP--------LNAENYIMIS 402
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
N+Y+S +W + +RK MK K ++ PG S ++
Sbjct: 403 NLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEV 437
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 163/496 (32%), Positives = 250/496 (50%), Gaps = 60/496 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ + T +KQIH QL+ N L + L Q + + +P + + + P
Sbjct: 16 IDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVR--NPTNLLYSNQILDQCAKPT 73
Query: 74 LFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
LF N++IR TP + S +++ D++T+ F + +CA+ S G
Sbjct: 74 LFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ----SACEAG 129
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNK------------------------------ 158
+H + K GF ++ V + LI YA
Sbjct: 130 PAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKC 189
Query: 159 -DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
DI + +FD MP R +WNAMI GY + + + AL LF+ M +D GVK +
Sbjct: 190 GDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSRE-----ALNLFKLMQMD--GVKVNE 242
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
+M+ V++ + LG L+ G H Y+EK + V +GTALVDMY KCG +D AL +F
Sbjct: 243 VSMISVVTACTHLGALDQGKWAHAYIEKN--KIQMTVNLGTALVDMYFKCGNVDRALKVF 300
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M EKNV TW+ G+A++G G + + L M+ G+ PN +TF S+ C G V+
Sbjct: 301 WEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVD 360
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
EG FD+MK G+EP ++HY C+VDL GRAG LEEA NFI +P+KP A W +LL+A
Sbjct: 361 EGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNA 420
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C ++ ++ LGE + L++++ + +V+LSNIYA W V +VR+ MK
Sbjct: 421 CRMYKNMELGEFASRKLIEVEGK--------NHGAYVSLSNIYADTGNWDRVSNVRQSMK 472
Query: 458 VKRVETEPGSSILQTT 473
+ + PG S+++
Sbjct: 473 AEGISKLPGCSVMEVN 488
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 174/528 (32%), Positives = 268/528 (50%), Gaps = 92/528 (17%)
Query: 12 LLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHF-----V 65
LL + T+ H+KQ HA ++ T L+ + L++ Y A+ + + + F V
Sbjct: 38 LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSY----ANVSTNRYLSFESSLRV 93
Query: 66 FTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
F PN+FL+N +I+ P ++L++ Y + + +TY L +C+
Sbjct: 94 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLY-YEMMVAHFRPNKYTYPAVLKACSDAGV 152
Query: 122 LSTLWLGRQIHVHVTKRGF---------------MFNVLVA-----------------TT 149
++ G Q+H H+ K G F LV
Sbjct: 153 VAE---GVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNA 209
Query: 150 LIHFYASNKDISSGKKVFDQMPMRSS-ATWNAMINGY--CSQSKKAKD------------ 194
+I Y ++ + +++F+ MP RS +TWNAMI+G+ C + A++
Sbjct: 210 MIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS 269
Query: 195 ------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
C AL +F M + ++P + VLS + LG L+ G +H Y
Sbjct: 270 WSAMIDGYIQEGCFMEALEIFHQMQKE--KIRPRKFVLPSVLSACANLGALDQGRWIHTY 327
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
++ + D +GT+LVDMY+KCG +D A +F +M K V +W AM G+A+HG+
Sbjct: 328 AKRNSI--QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAE 385
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+AI L M + PN +TF + AC H GLV++GL +F++M+ ++GVEP I+HY CI
Sbjct: 386 DAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 442
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGRAG L EA + IP +P +W +LL AC HG+V LGE+VGKILL+L+P+
Sbjct: 443 VDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ-- 500
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
S + LSNIYA A RW +V VRK MK + ++T PG+SI+
Sbjct: 501 ------NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 542
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/451 (35%), Positives = 251/451 (55%), Gaps = 29/451 (6%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HAQ+ + A +L+ LYC S +F N+FL+N LIR
Sbjct: 95 KQLHAQVCLAGFGFDTVIATKLVNLYCV----CDSLSSARLLFDRIPKHNIFLWNVLIRG 150
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
P ++ + Y + L D+FT+ F L +CA +LS + GR+IH HV + G+
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA---ALSAIEHGREIHEHVVQTGW 207
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+V V LI YA + S ++VFD++ +R + WN+M+ Y SQ+ C L
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAY-SQNGHPDAC----L 262
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
L +M++ +G++PT+ T+V +S S+ L G +HG + + + V TAL
Sbjct: 263 SLCSEMVL--TGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKV--KTAL 318
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY+KCG + A +F R+ K V++W AM TG A+HG EA+ L + M KP+
Sbjct: 319 VDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDH 377
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF + +AC H GL+EEG F+ M + ++P ++HY+C+VDLLG +G L+EAYN IM
Sbjct: 378 ITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIM 437
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ + PD+ +W +LL++C +H +V LGE + L++L+P+ + ++V LSNIY
Sbjct: 438 QMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD--------DAGNYVILSNIY 489
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A A +W V +RK M +R++ S ++
Sbjct: 490 AQAGKWEGVAKLRKLMTDRRLKKSIACSWIE 520
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q+H V GF F+ ++AT L++ Y +SS + +FD++P + WN +I GY
Sbjct: 94 GKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGY-- 151
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
A + + A V + D G+ P + T VL + L +E G +H ++ +T
Sbjct: 152 ----AWNGPYEAAVQLYYQMFDY-GLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTG 206
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E DVF+G AL+DMY+KCGC+ +A +F ++ ++ + W +M + +G + + L
Sbjct: 207 W--EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSL 264
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M G++P T + +A + +G L + + E H K + +VD+
Sbjct: 265 CSEMVLTGLRPTEATLVTAISASADNAALPQGRELH-GLSWRQEFESHDKVKTALVDMYA 323
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA----LGEKVGKILLQLQPE-VT 422
+ G + A N + +K + W ++++ +HG L E++ ++ +P+ +T
Sbjct: 324 KCGSVRVARNLFERLGVK-RVVSWNAMITGYAMHGHATEALDLFEEMNRV---AKPDHIT 379
Query: 423 FVDV--ACT 429
FV V AC+
Sbjct: 380 FVGVLSACS 388
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 214/400 (53%), Gaps = 51/400 (12%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T + + SCA+ L L LGR+ H ++ + G V +A L+ Y ++ S +
Sbjct: 207 DEVTMIGVVSSCAQ---LEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESAR 263
Query: 165 KVFD-------------------------------QMPMRSSATWNAMINGYCSQSKKAK 193
K+FD +MP + WNAMI GY ++ +
Sbjct: 264 KLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKE 323
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF +M + P + TMV LS SQLG L+ G +H Y+EK + +
Sbjct: 324 -----ALALFNEM--QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK--HELSLN 374
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V +GTAL+DMY+KCG + A+ +F + +N LTWTA+ +G+A+HG + AI M D
Sbjct: 375 VALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMID 434
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
V P+ VTF L +ACCH GLVEEG F M SK+ + P +KHYSC+VDLLGRAG LE
Sbjct: 435 NSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLE 494
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA I +PI+ DA++W +L AC +HG+V +GE+ LLQ+ P + + +
Sbjct: 495 EAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGI--------Y 546
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
V L+N+Y AE W + RK M+ + VE PG S ++
Sbjct: 547 VLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVN 586
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 109/424 (25%), Positives = 200/424 (47%), Gaps = 50/424 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + S +KQI +Q++ L + + +C + +F +P N
Sbjct: 13 LEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNP-NT 71
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +N IR P+++V+++ + D++TY +CAR LS + +G +
Sbjct: 72 FSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACAR---LSLIRMGSE 128
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
I HV GF ++ V+ +IH S D+ +K+FD+ +R +WN+MINGY
Sbjct: 129 ILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVR--- 185
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ A+ AL +R+M V G+KP + TM+ V+S +QL L+ G H Y+E+
Sbjct: 186 --RGWAYEALNFYREM--KVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGL-- 239
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG----------- 299
+ V + AL+DMY KCG L++A +F M K +++WT M G A G
Sbjct: 240 KLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDE 299
Query: 300 --------------------KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+G EA+ L + M+ + P+ VT S +AC G ++ G
Sbjct: 300 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVG 359
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+ + ++ K + ++ + ++D+ + G + +A +P + +++ W +++S
Sbjct: 360 IWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLA 417
Query: 400 VHGD 403
+HG+
Sbjct: 418 LHGN 421
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 67/174 (38%), Gaps = 34/174 (19%)
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFA 328
LD I R N +W G EA+ L + C G KP+ T+ LF
Sbjct: 56 LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 115
Query: 329 ACCHAGLVEEG-------LHL-FDN-----------MKSKWGVEPHIKHY--SCIVDLLG 367
AC L+ G LHL FD+ + S ++ K + SC+ DL+
Sbjct: 116 ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 175
Query: 368 ---------RAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGEK 409
R G EA NF + IKPD + ++S+C D+ LG +
Sbjct: 176 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 229
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/451 (36%), Positives = 239/451 (52%), Gaps = 67/451 (14%)
Query: 68 HFDPPNL--FLFNTLIRC---------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
HF P L FL+NTLIR P + +F G+ D T+ F L S
Sbjct: 16 HFSHPTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQP-DFHTFPFLLQS- 73
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ------- 169
F S S L LGR +H + + G + V T+LI Y+S ++ ++VFD+
Sbjct: 74 --FASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLP 131
Query: 170 ------------------------MPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLF 203
MP R+ +W+ MINGY C Q K+ AL LF
Sbjct: 132 SWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKE-------ALALF 184
Query: 204 RDM-LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
R+M ++ V+ V+P + TM VL+ +LG LE G H Y++K MP DV +GTAL+D
Sbjct: 185 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKC-GMPV-DVVLGTALID 242
Query: 263 MYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
MY+KCG ++ A +FS + K+V+ W+AM +G+A+HG E + L M + GV+PNAV
Sbjct: 243 MYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAV 302
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF ++F AC H GLV EG M + + P I+HY C+VDL GRAG ++EA+N +
Sbjct: 303 TFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKS 362
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P++PD ++W +LLS +HGD+ E K L++L+P S +V LSN+YA
Sbjct: 363 MPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEP--------TNSGAYVLLSNVYA 414
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQT 472
RW DV VR M+ ++ PG S+++
Sbjct: 415 KRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 445
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/329 (41%), Positives = 202/329 (61%), Gaps = 17/329 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+++ +A+ I +K FDQMP R +W AMI+GY ++ + L L
Sbjct: 305 DVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKE-----VLTL 359
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FRDM +S VKP + TMV +L+ + LG LE G Y++K +ND FIG AL+D
Sbjct: 360 FRDM--QMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKN--KIKNDTFIGNALID 415
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG ++ A IF+ M++K+ TWTAM G+A +G G EA+ + M + V P+ +T
Sbjct: 416 MYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEIT 475
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ + AC H GLV +G H F NM + G++P++ HY C+VDLLGRAGHL+EA IM +
Sbjct: 476 YIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNM 535
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+KP++I+W SLL AC VH +V L E +L+L+PE V +V L NIYA+
Sbjct: 536 PVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAV--------YVLLCNIYAA 587
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
++W ++ +VRK M + ++ PG S+++
Sbjct: 588 CKKWKNLHNVRKMMMERGIKKIPGCSLME 616
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 204/463 (44%), Gaps = 56/463 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ T I QIH+Q I L S L+ + ++C K S VF P++
Sbjct: 42 LETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGD-VYYARKVFDEIPQPSV 100
Query: 75 FLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++NT+I R + V ++ + + D FT+ F L F L G+
Sbjct: 101 FIWNTMIKGYSRINCSESGVSLYKLMLVHNIKP-DGFTFPFLLKG---FTKDMALKYGKV 156
Query: 131 IHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+ H GF+ N+ V IH ++ ++ +K+FD TWN +++GY ++
Sbjct: 157 LLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGY-NRF 215
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG-YMEKTFY 248
K+ ++ + LF +M V P T+V +LS S+L L G C++ Y+++
Sbjct: 216 KRYEE----SKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIV 271
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA------------ 296
P ++ + AL+DM++ CG +D A +F M+ ++V++WT++ TG A
Sbjct: 272 EP--NLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYF 329
Query: 297 --------------IHG-----KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
I G + E + L M+ VKP+ T S+ AC H G +E
Sbjct: 330 DQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALE 389
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS- 396
G K ++ + ++D+ + G++E+A + K D W +++
Sbjct: 390 LG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKDKFTWTAMIVG 447
Query: 397 -ACNVHGDVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVA 435
A N HG+ AL + + P E+T++ V ACT VA
Sbjct: 448 LANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVA 490
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 224/394 (56%), Gaps = 45/394 (11%)
Query: 111 FALGSCARFC-SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
F L + + C S+++L G+Q H ++ K GF +V+V T L+H YA + VFD+
Sbjct: 11 FTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDK 70
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM----------------------- 206
M RS+ TWNAMI G+ +Q++ K AL LF +M
Sbjct: 71 MSERSTRTWNAMITGH-AQNRDMK----KALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125
Query: 207 ------LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+ +G+K M VLS + L LE G H Y+ ++ + D+ +G+AL
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL--DIVVGSAL 183
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY+K G +++A +F +M ++N ++W ++ TG A HG+GN+A+ L + M G+KPN
Sbjct: 184 VDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNE 243
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
++F + +AC H GLV EG F+ M +G+ P + HY+C++DLLGRAG L+EA NFI
Sbjct: 244 ISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFIN 303
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
G+P++PD +W +LL AC +HG+ L +++ + LL ++ ++ + +V LSNIY
Sbjct: 304 GMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGI--------YVLLSNIY 355
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
A+A +W D VRK MK + V +PG S ++ T
Sbjct: 356 AAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKT 389
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 123/259 (47%), Gaps = 40/259 (15%)
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
GVKP T+ V+ + + LE G H Y+ K + E+DV + TALV MY++CG L+
Sbjct: 5 GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGF--ESDVVVQTALVHMYARCGSLE 62
Query: 272 N-------------------------------ALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ AL +F M E++V++WTA+ G A +G
Sbjct: 63 DAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGY 122
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G+E++ + + MR G+K + S+ +AC +E G F + G I S
Sbjct: 123 GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVVGS 181
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--LQ 418
+VD+ ++G +E+A +P + + + W S+++ C HG + + +LQ ++
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240
Query: 419 P-EVTFVDV--ACTSEDFV 434
P E++FV V AC+ V
Sbjct: 241 PNEISFVGVLSACSHTGLV 259
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 228/391 (58%), Gaps = 22/391 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+++ +F SKGL D + + +CA CS ++L GR++H H+ K N+ V+
Sbjct: 343 EAIGLFDEMQSKGLRP-DIYAVTSVVHACA--CS-NSLDKGREVHNHIKKNNMGSNLPVS 398
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
L++ YA + +F Q+P+++ +WN MI GY S + AL LF DM
Sbjct: 399 NALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNE-----ALQLFLDM- 452
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+KP D TM CVL + L LE G +HG++ + Y +D+ + ALVDMY KC
Sbjct: 453 --QKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYF--SDLHVACALVDMYVKC 508
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A +F + +K+++ WT M G +HG G EAI + MR G++P +FTS+
Sbjct: 509 GLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSIL 568
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL++EG LFD+MKS+ +EP ++HY+C+VDLL R+G+L AY FI +PIKPD
Sbjct: 569 YACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPD 628
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A +W +LLS C +H DV L EKV + + +L+PE T +V L+N+YA AE+W
Sbjct: 629 AAIWGALLSGCRIHHDVELAEKVAEHIFELEPENT--------RYYVLLANVYAEAEKWE 680
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +++++ ++ + G S ++ + +
Sbjct: 681 EVKKIQRRISKGGLKNDQGCSWIEVQGKFNI 711
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 195/412 (47%), Gaps = 37/412 (8%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K++H+ + +N + L A+L+ +Y + +I F +FL+N L+
Sbjct: 77 KRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRI----FDGILNDKIFLWNLLMSE 132
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYV-----FALGSCARFCSLSTLWLGRQIHVH 134
+ ++SV +F G+ D +T+ FA + R C +++H +
Sbjct: 133 YAKIGNYRESVGLFEKMQELGIRG-DSYTFTCVLKGFAASAKVREC--------KRVHGY 183
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
V K GF V +LI Y ++ S + +FD++ R +WN+MI+G C+ + ++
Sbjct: 184 VLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISG-CTMNGFSR- 241
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
N L F ML GV T+V VL + +G L G +H Y K + V
Sbjct: 242 ---NGLEFFIQMLN--LGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGF--SGGV 294
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
L+DMYSKCG L+ A +F +M E +++WT++ G EAI L D M+
Sbjct: 295 MFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSK 354
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G++P+ TS+ AC + +++G + +++K K + ++ + ++++ + G +EE
Sbjct: 355 GLRPDIYAVTSVVHACACSNSLDKGREVHNHIK-KNNMGSNLPVSNALMNMYAKCGSMEE 413
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
A +P+K + + W +++ + +L + ++ L +Q ++ DV
Sbjct: 414 ANLIFSQLPVK-NIVSWNTMIGG---YSQNSLPNEALQLFLDMQKQLKPDDV 461
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 130/292 (44%), Gaps = 18/292 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L CA SL G+++H ++ G + ++ L+ Y + D+ G+++F
Sbjct: 59 TYCSVLQLCAELKSLED---GKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIF 115
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D + WN +++ Y + LF M G++ T CVL
Sbjct: 116 DGILNDKIFLWNLLMSEYAKIGNYRESVG-----LFEKM--QELGIRGDSYTFTCVLKGF 168
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ + VHGY+ K + N V +L+ Y KCG +++A ++F + +++V++
Sbjct: 169 AASAKVRECKRVHGYVLKLGFGSYNAVV--NSLIAAYFKCGEVESARILFDELSDRDVVS 226
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDN 345
W +M +G ++G + M + GV ++ T ++ AC + G + G LH +
Sbjct: 227 WNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYG- 285
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
K G + + ++D+ + G+L A + + + + W S+++A
Sbjct: 286 --VKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG-ETTIVSWTSIIAA 334
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 252/473 (53%), Gaps = 27/473 (5%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
RC LL L+ + +H+ ++ +T A L A + A ++ +F
Sbjct: 75 RRCPGLLALR--SAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARNLF 132
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYW---VSKGLLTFDDFTYVFALGSCARFCSLS 123
P F +N+LIR P S A + + G + FT FAL +CA ++
Sbjct: 133 DQIPDPTAFCYNSLIRALPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACA---AVP 189
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSSATWNAMI 182
GRQ+H ++G + V T L++ YA + ++ + VFD M ++ W+AM+
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 249
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+GY AL LFR+M GV+P + TMV V+S ++ G L+ G VH Y
Sbjct: 250 SGYSRVG-----MVNEALGLFREM--QAVGVEPDEVTMVSVISACAKAGALDLGKWVHAY 302
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+++ D+ + TAL+DMY+KCG ++ A +F M EK+ W+AM G AIHG
Sbjct: 303 IDRKGITV--DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 360
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+A+ L M + V+PN VTF + +AC H+GLVE+G + M++ G++P +++Y C+
Sbjct: 361 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCM 419
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLL R+G L++AY+F++G+P+ P++++WR+LL AC + + E K LL+L+P
Sbjct: 420 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPH-- 477
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
E++V LSN+YAS +W V +R++MK K V G S ++ H
Sbjct: 478 ------NPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGH 524
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 206/360 (57%), Gaps = 19/360 (5%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
L LG+Q+H ++ + GF ++ +AT L+ Y DI + + +FD R W AM+
Sbjct: 312 GALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAML 371
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+ Y +C A LF M SGV+PT T+V +LS+ + G L+ G VH Y
Sbjct: 372 SAYAQ-----ANCIDQAFNLFDQM--RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSY 424
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
++K E D + TALVDMY+KCG ++ A +F +++ W A+ TG A+HG G
Sbjct: 425 IDKERV--EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGE 482
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EA+ + M GVKPN +TF L AC HAGLV EG LF+ M +G+ P I+HY C+
Sbjct: 483 EALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCM 542
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGRAG L+EA+ I +PIKP+ I+W +L++AC +H + LGE LL+++PE
Sbjct: 543 VDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENC 602
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDG 480
+ V +SNIYA+A RW D VRK MK ++ EPG S+++ T H L G
Sbjct: 603 GYN--------VLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMG 654
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 11/272 (4%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LG++IH V K+G +V V L+ Y + + VFD+M R +W+ MI
Sbjct: 112 LGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSL- 170
Query: 187 SQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+++ F+ AL L R+M + V+P++ MV ++++ + + G +H Y+ +
Sbjct: 171 -----SRNKEFDMALELIREM--NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIR 223
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
V TAL+DMY+KCG L A +F+ + +K V++WTAM G + E
Sbjct: 224 NSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGT 283
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+L M++ + PN +T SL C G ++ G L + G + + +VD+
Sbjct: 284 KLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRN-GFSVSLALATALVDM 342
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G+ + A + D ++W ++LSA
Sbjct: 343 YGKCSDIRNARALFDSTQNR-DVMIWTAMLSA 373
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 160/419 (38%), Positives = 231/419 (55%), Gaps = 32/419 (7%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F F ++ +NT+I D ++ F V +G+ D T L +C+
Sbjct: 170 LFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV-ELDGVTIASVLPACSH-- 226
Query: 121 SLSTLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
L L +G++IH +V + + N V + L+ Y + + + SG++VFD + R WN
Sbjct: 227 -LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWN 285
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL-SVSSQLGLLEFGAC 238
AMI+GY K AL+LF +M + V+G+ P TTM V+ + L + G
Sbjct: 286 AMISGYARNGLDEK-----ALILFIEM-IKVAGLLPNTTTMASVMPACVHSLAAIAKGKE 339
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H Y + M +D+ +G+ALVDMY+KCGCL+ + +F+ M KNV+TW + +H
Sbjct: 340 IHAYAIRN--MLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMH 397
Query: 299 GKGNEAIRLLDSM-----RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
GKG EA+ L +M R KPN VTF ++FAAC H+GL+ EGL+LF MK GVE
Sbjct: 398 GKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVE 457
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVALGEKVGK 412
P HY+C+VDLLGRAG LEEAY + +P + D + W SLL AC +H +V LGE K
Sbjct: 458 PTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAK 517
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LL L+P V + +V LSNIY+SA W VRK M+ V+ EPG S ++
Sbjct: 518 NLLHLEPNV--------ASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 568
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 169/368 (45%), Gaps = 54/368 (14%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNVLVATTLIHFY--------- 154
D+F + L + + L T G QIH K G+ +V VA TL++ Y
Sbjct: 91 DNFAFPAVLKAVSGLQDLKT---GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDK 147
Query: 155 -----------ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
A + K +F+ R +WN MI+ + SQS + + AL F
Sbjct: 148 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSF-SQSDRFSE----ALAFF 202
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
R M+++ GV+ T+ VL S L L+ G +H Y+ + + EN F+G+ALVDM
Sbjct: 203 RLMVLE--GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS-FVGSALVDM 259
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL-LDSMRDCGVKPNAVT 322
Y C +++ +F + + + W AM +G A +G +A+ L ++ ++ G+ PN T
Sbjct: 260 YCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTT 319
Query: 323 FTSLFAACCHA-GLVEEG--LHLF--DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
S+ AC H+ + +G +H + NM + I S +VD+ + G L +
Sbjct: 320 MASVMPACVHSLAAIAKGKEIHAYAIRNM-----LASDITVGSALVDMYAKCGCLNLSRR 374
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL-------QLQP-EVTFVDV--A 427
+P K + I W L+ AC +HG ++ K ++ + +P EVTF+ V A
Sbjct: 375 VFNEMPNK-NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 433
Query: 428 CTSEDFVA 435
C+ ++
Sbjct: 434 CSHSGLIS 441
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 115/269 (42%), Gaps = 36/269 (13%)
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
P RS+A+W + +S+ + A+ + +M V SG +P + VL S L
Sbjct: 53 PSRSTASWVDAL-----RSRTRSNDFREAISTYIEMTV--SGARPDNFAFPAVLKAVSGL 105
Query: 231 GLLEFGACVH------GYMEKTFYMPE-------------NDVFIGTALVDMYSKCGCLD 271
L+ G +H GY + + + F AL+ MY+K G +D
Sbjct: 106 QDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVD 165
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
++ +F ++++++W M + + + +EA+ M GV+ + VT S+ AC
Sbjct: 166 DSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACS 225
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDA 388
H ++ G + + + + S +VD+ +E ++ I+G I+
Sbjct: 226 HLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE--- 282
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQL 417
LW +++S +G L EK + +++
Sbjct: 283 -LWNAMISGYARNG---LDEKALILFIEM 307
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 250/509 (49%), Gaps = 74/509 (14%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
I+Q HA ++ L A + + P++ H + + PN F N++IR
Sbjct: 24 EIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIESPNGFTHNSVIR 83
Query: 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P+ ++ VF + G + D +++ F L +CA FC GRQIH K
Sbjct: 84 AYANSSTPEIALTVFREML-LGPVFPDKYSFTFVLKACAAFCGFEE---GRQIHGLFMKS 139
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA------------------ 180
+ +V V TLI+ Y + +KV D+MP+R + +WN+
Sbjct: 140 DLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALF 199
Query: 181 -------------MINGYCSQS--KKAKDC-----------------------AFNALVL 202
MI+GY + K+A++ +N ++
Sbjct: 200 DEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLE 259
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
+M++D S +P T+V VLS + LG L G VH Y++K + E + F+ TALVD
Sbjct: 260 VFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDK--HGIEIEGFVATALVD 317
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKCG +D AL +F +++V TW ++ TG+++HG G +A+ + M G KPN +T
Sbjct: 318 MYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGIT 377
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + +AC H GL+++ LF+ M S +G+EP I+HY C+VDLLGR G EEA + +
Sbjct: 378 FIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEV 437
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P +IL SLL AC G + E++ LL+ P S +V +SN+YAS
Sbjct: 438 PADEASILLESLLGACKRFGKLEQAERIANRLLESNPR--------ESSGYVQMSNLYAS 489
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
RW + VR +M+ +RV+ PG S+++
Sbjct: 490 HGRWDEAMEVRGKMRAERVKKNPGCSMIE 518
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 172/503 (34%), Positives = 259/503 (51%), Gaps = 73/503 (14%)
Query: 20 TPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T +KQ+HAQ+I A ++ P A+L++ + + +F PN F +N
Sbjct: 23 TMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAV--SDHRDLDYARKIFRSMHRPNCFSYN 80
Query: 79 TLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH-- 132
TLIR P D++LVF V + + FT+ +C R L GRQ+H
Sbjct: 81 TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLRE---GRQVHGL 137
Query: 133 --------------------------------------------VHVTKRGFMFNVLVAT 148
+ KR +V++
Sbjct: 138 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 197
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
+I Y ++ + +FD+MP RS +WN MI GY +QS K+ A+ +FR+M
Sbjct: 198 VMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGY-AQSGHFKE----AVEVFREM-- 250
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
++ V P T+V VL S+LG LE G VH Y + + +DV +G+AL+DMY+KCG
Sbjct: 251 QMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN-NIGVDDV-LGSALIDMYAKCG 308
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
++ AL +F + ++NV+TW+ + G+A+HG+ + + + M GV P+ VT+ L +
Sbjct: 309 SIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLS 368
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC HAGLV EG FD+M G+EP I+HY C+VDLLGRAG LEE+ I+ +PIKPD
Sbjct: 369 ACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDD 428
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
++W++LL AC +HG+V +G++V + L++L P S +VALSNIYAS W
Sbjct: 429 VIWKALLGACKMHGNVEMGKRVAEHLMELAPH--------DSGSYVALSNIYASLGNWEG 480
Query: 449 VESVRKQMKVKRVETEPGSSILQ 471
V VR MK V +PG S ++
Sbjct: 481 VAKVRLMMKEMDVRKDPGCSWIE 503
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/450 (33%), Positives = 246/450 (54%), Gaps = 24/450 (5%)
Query: 27 IHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-- 83
+H L+ P A +LI ++ + K VF ++++N L R
Sbjct: 91 VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARK----VFDKTRKRTIYVWNALFRALA 146
Query: 84 -TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC-ARFCSLSTLWLGRQIHVHVTKRGFM 141
+ VL ++ ++ D FTY + L +C A C +S L G++IH H+ + G+
Sbjct: 147 LAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYG 206
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+V V TTL+ YA +S VFD+MP+++ +W+AMI Y K + AL
Sbjct: 207 AHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGK-----PYEALE 261
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR+M+++ P TMV VL + LE G +H Y+ + ++ + + +AL+
Sbjct: 262 LFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGL--DSILPVISALI 319
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
MY++CG L++ LIF RM +K+V+ W ++ + +HG G +AI++ + M D G P+ +
Sbjct: 320 TMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHI 379
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+F S+ AC H GLVEEG LF++M + G++P ++HY+C+VDLLGRA L+EA I
Sbjct: 380 SFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIED 439
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ I+P +W SLL AC +H V L E+ K L +L+P + ++V L++IYA
Sbjct: 440 LRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEP--------TNAGNYVLLADIYA 491
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQ 471
AE W +V+ V+K + + ++ PG S ++
Sbjct: 492 EAEMWDEVKRVKKLLDSRELQKVPGRSWIE 521
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 252/473 (53%), Gaps = 27/473 (5%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
RC LL L+ + +H+ ++ +T A L A + A ++ +F
Sbjct: 26 RRCPGLLALR--SAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASSYARNLF 83
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYW---VSKGLLTFDDFTYVFALGSCARFCSLS 123
P F +N+LIR P S A + + G + FT FAL +CA ++
Sbjct: 84 DQIPDPTAFCYNSLIRALPAAGSAPALAVYRRMLRAGSPRPNSFTLAFALKACA---AVP 140
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSSATWNAMI 182
GRQ+H ++G + V T L++ YA + ++ + VFD M ++ W+AM+
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 200
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+GY AL LFR+M GV+P + TMV V+S ++ G L+ G VH Y
Sbjct: 201 SGYSRVG-----MVNEALGLFREM--QAVGVEPDEVTMVSVISACAKAGALDLGKWVHAY 253
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+++ D+ + TAL+DMY+KCG ++ A +F M EK+ W+AM G AIHG
Sbjct: 254 IDRKGITV--DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 311
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+A+ L M + V+PN VTF + +AC H+GLVE+G + M++ G++P +++Y C+
Sbjct: 312 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCM 370
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLL R+G L++AY+F++G+P+ P++++WR+LL AC + + E K LL+L+P
Sbjct: 371 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPH-- 428
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
E++V LSN+YAS +W V +R++MK K V G S ++ H
Sbjct: 429 ------NPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGH 475
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 163/520 (31%), Positives = 257/520 (49%), Gaps = 83/520 (15%)
Query: 23 HIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
IKQ+HA ++ L +LI + + T VF P+ F++NTLI
Sbjct: 23 QIKQVHALMVLQGFLSDSSALRELI--FASAVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 82 R----CTPPQDSVLVFAYWVSKG----LLTF--DDFTYVFALGSCARFCSLSTLWLGRQI 131
R P+D+V ++A L+T D T+ F L +CA + T G Q+
Sbjct: 81 RGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGET---GAQV 137
Query: 132 HVHVTKRG-----FMFNVLVA--------------------------TTLIHFYASNKDI 160
H HV K G F+ N L+ + +I +A DI
Sbjct: 138 HAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDI 197
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKA-----------KDC-AFNALV------- 201
+ +++FD+ P++ +WN MI Y A +D ++NA++
Sbjct: 198 GAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCG 257
Query: 202 -------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
LF M G KP TM+ +LS + G L+ G +HG++ F
Sbjct: 258 SRKQAMELFEQM--QAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTT 315
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+G AL+DMY+KCG + +AL +F M++KNV TW ++ G+A+HG E+I + M
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQG 375
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
VKP+ +TF ++ AAC H G+V++G F M+ ++ +EP+IKHY C+VD+L R G L+E
Sbjct: 376 NVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKE 435
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A+ FI + I+P+ ++WR+LL AC +HG++ L E + LL+ + + S DFV
Sbjct: 436 AFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSD--------ASGDFV 487
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
LSNIYAS WP E++RK M V E G +++ +++
Sbjct: 488 LLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVIDSSS 527
>gi|297827165|ref|XP_002881465.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327304|gb|EFH57724.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 261/479 (54%), Gaps = 46/479 (9%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFV 65
H+C LKL ++ H+ QIH Q+ ++L++ + ++LI++ +S TK + F
Sbjct: 14 HQCLIFLKL--CSSIKHLLQIHGQIHVSSLQNDSFIISELIRV-----SSLSHTKDLAFA 66
Query: 66 FT---HFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
T H +N L R P +S+ V++ + + + + T+ F L +CA
Sbjct: 67 RTLLLHSSDSTPSTWNMLTRGYSSSDTPVESIWVYSE-MKRRRIKPNKLTFPFLLKACAS 125
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F L+ GRQI V V K GF +V V LIH Y S K S +KVFD+M R+ +W
Sbjct: 126 FLGLTA---GRQIQVEVLKHGFDSDVYVGNNLIHLYGSCKKTSDARKVFDEMTERNVVSW 182
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK--PTDTTMVCVLSVSSQLGLLEFG 236
N+++ K FN +V + ++ G + P +TTMV +LS G L G
Sbjct: 183 NSIMTALVENGK------FNLVV---ECFFEMIGRQFCPDETTMVVLLSACG--GNLSLG 231
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
VH + E + +GTALVDMY+K G L A L+F RM +KNV TW+AM G+A
Sbjct: 232 KLVHSQV--MVRELELNCRLGTALVDMYAKSGGLKYARLVFERMADKNVWTWSAMIVGLA 289
Query: 297 IHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+G EA++L M ++ V+PN VTF + AC H GLV++G F M+ + ++P
Sbjct: 290 QYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKRHKIKPM 349
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH---GDVALGEKVGK 412
+ HY +VD+LGRAG L EAY+FI +P +PDA++WR+LLSAC++H D +GEKV K
Sbjct: 350 MIHYGAMVDILGRAGRLNEAYDFIQKMPFEPDAVVWRTLLSACSIHHDEDDKGIGEKVKK 409
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L++L+P+ S + V ++N +A A W + VR+ MK +++ G S L+
Sbjct: 410 RLIELEPK--------RSGNLVIVANRFAEARMWDEAAEVRRVMKETKMKKIAGESCLE 460
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 164/452 (36%), Positives = 254/452 (56%), Gaps = 29/452 (6%)
Query: 24 IKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+ Q+HA +I + S L +L+ L C + + +I F P+ FLF +LIR
Sbjct: 28 LHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQI----FLIVPNPDSFLFTSLIR 83
Query: 83 CTPPQDSVLVFA-YWVSKGLLTF---DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
T + V++ Y+ ++ +L+ ++T+ + SCA L L GR IH HV
Sbjct: 84 STSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCA---DLVALRHGRIIHGHVLVN 140
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF +V V T L+ FY + + +KVFD+M RS TWN+MI+GY Q+ AK+
Sbjct: 141 GFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGY-EQNGFAKE---- 195
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ LF D + ++ GV+P T V VLS + LG G VH Y + +V +GT
Sbjct: 196 AIRLF-DRMKEI-GVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGL--DLNVVLGT 251
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L++MY++CG + A +F M+E+NV+ WTAM +G +G G++A+ L MR G+ P
Sbjct: 252 SLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLP 311
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N++TF ++ +AC HAGLV EG +F++M+ ++ + P ++H+ C+VD+LGRAG L+EAYNF
Sbjct: 312 NSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNF 371
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I I +P +W ++L AC +H + LG +V + L +P +V LSN
Sbjct: 372 IKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPG--------NPAHYVILSN 423
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
IYA A R VE VR M K ++ + G S +
Sbjct: 424 IYALAGRMDQVEMVRDNMIRKCLKKQVGYSTI 455
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 161/338 (47%), Gaps = 54/338 (15%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L L Q+H HV G+ + + T L++ + IS +++F +P S + ++I
Sbjct: 25 LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIR- 83
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
+ K + + +L + M+ +S V P++ T V+ + L L G +HG++
Sbjct: 84 ---STSKFHNFSVYSLYFYTRMV--LSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVL 138
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ +DV++ TAL+ Y KCG L NA +F +MR+++V+TW +M +G +G EA
Sbjct: 139 VNGF--GSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEA 196
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAG-----------LVEEGLHL----------- 342
IRL D M++ GV+PN+ TF S+ +AC H G V GL L
Sbjct: 197 IRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINM 256
Query: 343 -------------FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP---IKP 386
FD+MK E ++ ++ ++ G G+ +A + + P
Sbjct: 257 YTRCGNVSKAREVFDSMK-----ERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLP 311
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKIL---LQLQPEV 421
++I + ++LSAC G V G +V + + +L PEV
Sbjct: 312 NSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEV 349
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 174/528 (32%), Positives = 268/528 (50%), Gaps = 92/528 (17%)
Query: 12 LLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHF-----V 65
LL + T+ H+KQ HA ++ T L+ + L++ Y A+ + + + F V
Sbjct: 39 LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSY----ANVSTNRYLSFESSLRV 94
Query: 66 FTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
F PN+FL+N +I+ P ++L++ Y + + +TY L +C+
Sbjct: 95 FDFVRKPNVFLWNCMIKVCIENNEPFKAILLY-YEMVVAHSRPNKYTYPAVLKACSDSGV 153
Query: 122 LSTLWLGRQIHVHVTKRGF---------------MFNVLVA-----------------TT 149
++ G Q+H H+ K G F LV
Sbjct: 154 VAE---GVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNA 210
Query: 150 LIHFYASNKDISSGKKVFDQMPMRSS-ATWNAMINGY--CSQSKKAKD------------ 194
+I Y ++ + +++F+ MP RS +TWNAMI+G+ C + A++
Sbjct: 211 MIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEIS 270
Query: 195 ------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
C AL +F M + ++P + VLS + LG L+ G +H Y
Sbjct: 271 WSAMIDGYIQEGCFMEALEIFHQMQKE--KIRPRKFVLPSVLSACANLGALDQGRWIHTY 328
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
++ + D +GT+LVDMY+KCG +D A +F +M K V +W AM G+A+HG+
Sbjct: 329 AKRNSI--QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAE 386
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+AI L M + PN +TF + AC H GLV++GL +F++M+ ++GVEP I+HY CI
Sbjct: 387 DAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCI 443
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGRAG L EA + IP +P +W +LL AC HG+V LGE+VGKILL+L+P+
Sbjct: 444 VDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQ-- 501
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
S + LSNIYA A RW +V VRK MK + ++T PG+SI+
Sbjct: 502 ------NSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSII 543
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 199/324 (61%), Gaps = 17/324 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
TLI YA ++ + +FD+MP R++ +W+AM+NGY Q+ ++ AL LF M
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYV-QAGDGRE----ALGLFARMQ 335
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D GV+P DT +V VL+ +QLG+LE G VHGY++ VF+GTALVDMY+KC
Sbjct: 336 AD--GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNI--RITVFLGTALVDMYAKC 391
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + A+ +F M+EKNVL WT M G+A+HG+G+EA+ L M GVKP+ + F
Sbjct: 392 GEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGAL 451
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLV++G LFD+M K+G++P I+HY C+VDLL R G L EA + +P+KPD
Sbjct: 452 CACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPD 511
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W +L++ C H +V L E V K ++L+P+ S +V L NIYA++ R
Sbjct: 512 ALIWGALMAGCRFHKNVELAEYVVKHWIELEPD--------KSGAYVLLGNIYAASGRHA 563
Query: 448 DVESVRKQMKVKRVETEPGSSILQ 471
+R M+ K V+ PG S ++
Sbjct: 564 SAREIRHLMREKGVDKTPGCSTVE 587
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 13/224 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ N ++ ++++ +FA + G+ DD V L +CA+ L L G+ +H ++
Sbjct: 314 MVNGYVQAGDGREALGLFARMQADGVRP-DDTVLVGVLAACAQ---LGVLEQGKWVHGYL 369
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
V + T L+ YA ++ +VF M ++ W MI G + ++
Sbjct: 370 KANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSE-- 427
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL LF M + GVKP D + L + GL++ G + M + + +
Sbjct: 428 ---ALELFSQM--ERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEH 482
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIH 298
G +VD+ ++ G L+ A + +M K + L W A+ G H
Sbjct: 483 YGC-MVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFH 525
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 217/367 (59%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
DDFTY L +CA +L+T G +IH + K G F+ V L+ Y I
Sbjct: 483 DDFTYGSVLKACAGRQALNT---GMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKAD 539
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ D+ ++ +WNA+I+G+ S ++++D A F ML GV P + T VL
Sbjct: 540 KIHDRTEQKTMVSWNAIISGF-SLLQQSED----AHKFFSRMLE--MGVNPDNFTYAAVL 592
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L + G +H + K ++DV+I + LVDMYSKCG + ++ L+F + ++
Sbjct: 593 DTCANLATVGLGKQIHAQIIKQEL--QSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRD 650
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW AM G A HG G EA++L +SM+ VKPN TF S+ AC H GLV++GLH FD
Sbjct: 651 FVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFD 710
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M S++G++P +HYSC+VD+LGR+G ++EA N + +P + DA++WR+LLS C +HG+V
Sbjct: 711 VMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNV 770
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ EK + LLQL P+ + AC V LSNIYA A W +V +RK M+ +++ E
Sbjct: 771 EVAEKATRALLQLDPQDS---SAC-----VLLSNIYADAGMWGNVSEMRKMMRHNKLKKE 822
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 823 PGCSWIE 829
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 14/300 (4%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
FD + L +C +L +G Q+H V K GF +V+ + L+ YA K +
Sbjct: 179 FDRASLAVVLKACG---ALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDS 235
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
VF ++P ++ +W+AMI G C Q+ D L LF++M GV + + +
Sbjct: 236 LSVFSELPEKNWVSWSAMIAG-CVQN----DRNVEGLELFKEM--QGVGVGVSQSIYASL 288
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+ L L G +H + K+ + +D+ +GTA +DMY+KCG + +A + S M +
Sbjct: 289 FRSCAALSALRLGKELHSHALKSAF--GSDIIVGTATLDMYAKCGRMADAQKVLSSMPKC 346
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++ ++ A+ G A +G +A++ + G+ + +T + AC EG +
Sbjct: 347 SLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVH 406
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ K +I + I+D+ G+ L EA + + + + DA+ W ++++AC +G+
Sbjct: 407 -GLAVKSISMSNICVANAILDMYGKCKALAEASD-LFDMMERRDAVSWNAIIAACEQNGN 464
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 161/360 (44%), Gaps = 57/360 (15%)
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
Y SCA +LS L LG+++H H K F +++V T + YA ++ +KV
Sbjct: 285 YASLFRSCA---ALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLS 341
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
MP S ++NA+I GY D F AL F+ +L +G+ + T+ L+ +
Sbjct: 342 SMPKCSLQSYNAIIVGYAR-----SDRGFQALKSFQLLL--KTGLGFDEITLSGALNACA 394
Query: 229 QL-GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ G LE G VHG K+ M +++ + A++DMY KC L A +F M ++ ++
Sbjct: 395 SIRGDLE-GRQVHGLAVKSISM--SNICVANAILDMYGKCKALAEASDLFDMMERRDAVS 451
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
W A+ +G E + SM ++P+ T+ S+ AC + G+ + +
Sbjct: 452 WNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRII 511
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEA------------------------------- 375
KS G + + + +VD+ + G +E+A
Sbjct: 512 KSGMGFDSFVG--AALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDA 569
Query: 376 ---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV-GKILLQ-LQPEV----TFVDV 426
++ ++ + + PD + ++L C V LG+++ +I+ Q LQ +V T VD+
Sbjct: 570 HKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDM 629
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 12/250 (4%)
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
V + ++ +V+ ++I YAS ++ +K F +MP R +WN++I+G+ + K
Sbjct: 106 VFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRK- 164
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
++ +F +M GV ++ VL L + G VHG + K + + DV
Sbjct: 165 ----SIDVFLEM--GRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGF--DCDV 216
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
G+AL+ MY+KC LD++L +FS + EKN ++W+AM G + + E + L M+
Sbjct: 217 VTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGV 276
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV + + SLF +C + G L + +KS +G + + + +D+ + G +
Sbjct: 277 GVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVG--TATLDMYAKCGRMA 334
Query: 374 EAYNFIMGIP 383
+A + +P
Sbjct: 335 DAQKVLSSMP 344
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 221/393 (56%), Gaps = 21/393 (5%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IRC ++ +F + + + +D T + + SC + + LG+++H ++ + GF
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFP-NDITMLSLIISCG---FVGAVQLGKRLHAYILRNGF 263
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
++ +AT L+ Y +I S + +FD M + TW AMI+ Y + D AF
Sbjct: 264 GMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQAN--CIDYAFQLF 321
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
V RD +GV+P + TMV +LS+ + G L+ G H Y++K E DV + TAL
Sbjct: 322 VQMRD-----NGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGV--EVDVILKTAL 374
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY+KCG + A +FS ++++ TW M G +HG G +A++L M GVKPN
Sbjct: 375 IDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND 434
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF AC HAGLV EG LF+ M +G+ P ++HY C+VDLLGRAG L+EAY I
Sbjct: 435 ITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIE 494
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P+ P+ +W ++L+AC +H + +GE + LL L+P+ C + V +SNIY
Sbjct: 495 SMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQ------NCGYK--VLMSNIY 546
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
A+A RW DV +RK +K ++ EPG S ++
Sbjct: 547 AAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVN 579
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 182/398 (45%), Gaps = 42/398 (10%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
H THF+ F+ + P+ ++ + Y + K + D F L +C++ +
Sbjct: 69 HITRTHFNHAQQVSFSPFE--SHPRYALNTYTY-MRKLDIEVDSFIIPSVLKACSQ---I 122
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S +G++IH K G + +V V L+ Y+ + S + +FD+M R +W+ MI
Sbjct: 123 SVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMI 182
Query: 183 NGYCS---QSKKAKDCAFNALV--------------LFRDMLVDVSGVKPTDTTMVCVLS 225
Y + + ++ A++ LF M+ + V P D TM+ ++
Sbjct: 183 RAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEE--NVFPNDITMLSLII 240
Query: 226 VSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+G ++ G +H Y + F M + + TALVDMY KCG + +A IF M+ K+
Sbjct: 241 SCGFVGAVQLGKRLHAYILRNGFGM---SLALATALVDMYGKCGEIRSARAIFDSMKNKD 297
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWTAM + A + A +L MRD GV+PN +T SL + C G ++ G F
Sbjct: 298 VMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFH 356
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
K GVE + + ++D+ + G + A + I D W +++ +HG
Sbjct: 357 AYIDKQGVEVDVILKTALIDMYAKCGDISGAQR-LFSEAIDRDICTWNVMMAGYGMHG-- 413
Query: 405 ALGEKVGKILLQLQP------EVTFVDV--ACTSEDFV 434
GEK K+ +++ ++TF+ AC+ V
Sbjct: 414 -YGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLV 450
>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 605
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 232/413 (56%), Gaps = 24/413 (5%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F + P F +NT+IR ++++L++ + +G+ D+FTY F L +C+
Sbjct: 87 IFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEP-DNFTYPFVLKACSLLV 145
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L G QIH HV G +V V LI Y I VF+QM +S A+W++
Sbjct: 146 ALKE---GVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSS 202
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I + S + +C L+L DM + + ++ +V LS + LG G C+H
Sbjct: 203 IIGAHAS-VEMWHEC----LMLLGDMSRE-GRHRAEESILVSALSACTHLGSPNLGRCIH 256
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G + + + E +V + T+L+DMY KCG L+ L +F M KN ++T M G+AIHG+
Sbjct: 257 GILLRN--ISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGR 314
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA+R+ M + G+ P+ V + + +AC HAGLV+EG F+ M+ + ++P I+HY
Sbjct: 315 GREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYG 374
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDL+GRAG L+EAY+ I +PIKP+ ++WRSLLSAC VH ++ +GE + +L
Sbjct: 375 CMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKH 434
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
D++ L+N+YA A++W +V +R +M K + PG S+++
Sbjct: 435 --------NPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEAN 479
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/324 (42%), Positives = 199/324 (61%), Gaps = 17/324 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
TLI YA ++ + +FD+MP R++ +W+AM+NGY Q+ ++ AL LF M
Sbjct: 281 NTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYV-QAGDGRE----ALGLFARMQ 335
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D GV+P DT +V VL+ +QLG+LE G VHGY++ VF+GTALVDMY+KC
Sbjct: 336 AD--GVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNI--RITVFLGTALVDMYAKC 391
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + A+ +F M+EKNVL WT M G+A+HG+G+EA+ L M GVKP+ + F
Sbjct: 392 GEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGAL 451
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLV++G LFD+M K+G++P I+HY C+VDLL R G L EA + +P+KPD
Sbjct: 452 CACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPD 511
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W +L++ C H +V L E V K ++L+P+ S +V L NIYA++ R
Sbjct: 512 ALIWGALMAGCRFHKNVELAEYVVKHWIELEPD--------KSGAYVLLGNIYAASGRHA 563
Query: 448 DVESVRKQMKVKRVETEPGSSILQ 471
+R M+ K V+ PG S ++
Sbjct: 564 SAREIRHLMREKGVDKTPGCSTVE 587
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 13/224 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ N ++ ++++ +FA + G+ DD V L +CA+ L L G+ +H ++
Sbjct: 314 MVNGYVQAGDGREALGLFARMQADGVRP-DDTVLVGVLAACAQ---LGVLEQGKWVHGYL 369
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
V + T L+ YA ++ +VF M ++ W MI G + ++
Sbjct: 370 KANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSE-- 427
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL LF M + GVKP D + L + GL++ G + M + + +
Sbjct: 428 ---ALELFSQM--ERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEH 482
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIH 298
G +VD+ ++ G L+ A + +M K + L W A+ G H
Sbjct: 483 YGC-MVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFH 525
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/489 (31%), Positives = 243/489 (49%), Gaps = 56/489 (11%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+K IHA +I +L + C K + +F PN +L+N +IR
Sbjct: 29 ELKSIHAHVIKYSLSQSSFLVTKMVDVCDKT---EDLGYASLLFKQVKEPNGYLYNAMIR 85
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDD-----------FTYVFALGSCARFCSLSTLWLGRQI 131
+ V A K +L D FT+ F + SC+ + LG+Q+
Sbjct: 86 AHT-HNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYN---LGKQV 141
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H H+ K G N+ + LI Y + KVFD M R + +WN++I+G+ +
Sbjct: 142 HAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQM 201
Query: 192 AKDCAF--------------------------NALVLFRDMLVDVSGVKPTDTTMVCVLS 225
K A +AL +FR M + GV+P + +++ VL
Sbjct: 202 RKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQM--QIVGVEPDEISIISVLP 259
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+QLG LE G +H Y ++ + + I AL++MYSKCGC+ A +F +M + +V
Sbjct: 260 ACAQLGALEVGKWIHMYCDRNGLLRKTS--ICNALMEMYSKCGCIGQAYQLFDQMSKGDV 317
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++W+ M G+A HGK EAI L M+ ++PN +TF L +AC HAG EGL FD+
Sbjct: 318 ISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDS 377
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M + +EP ++HY C+VD+LGRAG L +A + I +P+KPD+ +W SLLS+C H ++
Sbjct: 378 MSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLD 437
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
+ + L +L+P+ T ++V LSNIYA +W V +RK +K K ++ P
Sbjct: 438 IAIIAMEHLEELEPDDT--------GNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTP 489
Query: 466 GSSILQTTT 474
GSS++
Sbjct: 490 GSSLIDINN 498
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 233/451 (51%), Gaps = 22/451 (4%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL-FLFNTLI 81
IKQ+HAQ+ T + + A + C K + ++ DP + + +
Sbjct: 18 QIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFV 77
Query: 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
+ + F + G D+F+ F + +C L +GR IH V K G
Sbjct: 78 KNGDYERCFQTFRELIRAGSKP-DNFSLPFVIKACR---DTMGLIMGRLIHSTVLKNGLH 133
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+ V +TL+ YA I + K++FD+MP + T MI GY K + + V
Sbjct: 134 LDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNE-----SWV 188
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LF M D G P MV +++ ++LG + VH Y+ Y DV +GTA++
Sbjct: 189 LFDQMRRD--GFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRY--SLDVELGTAMI 244
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KCG +D++ IF RM +KNV++W+AM HG+G EA+ L M + G+ PN +
Sbjct: 245 DMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRI 304
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF SL AC HAGLV++GL LF M +GV P +KHY+C+VDLLGRAG L++A I
Sbjct: 305 TFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIEN 364
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ ++ D +W + L AC +H V L EK K+LL LQ + ++ LSNIYA
Sbjct: 365 MEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQ--------NPGHYILLSNIYA 416
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+A RW DV +R M +R++ PG + ++
Sbjct: 417 NAGRWKDVAKIRNLMAKRRLKKIPGYTWIEV 447
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 166/481 (34%), Positives = 264/481 (54%), Gaps = 52/481 (10%)
Query: 25 KQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
K++HA LIT+ L + +LI LY + +S S +F P+ +L+NT+ R
Sbjct: 5 KRLHAHLITSGLHQQENHLRKLITLYTSSSSS--SLHHARLLFDAIHHPSTYLYNTMFRV 62
Query: 83 --CTP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+P P ++L+ + + G D +T+ F L +C+ +L+ L G+++H K G
Sbjct: 63 YAASPTPLHALLLHRHMLRHGPPP-DTYTFPFLLKACS---ALAHLPKGQELHCQALKFG 118
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ-SKKAKDCAFN 198
+V V +LIH Y SN + S ++VFD M R A+W ++ Y + S KA F+
Sbjct: 119 LGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFD 178
Query: 199 -------------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
AL LFR++ ++P+D+ ++ VL + LG L
Sbjct: 179 EMPERSVISYSAMIAAYVRGNRFREALDLFRELFS--VKIEPSDSCVMSVLCACANLGAL 236
Query: 234 EFGACVHGYM--EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+ G V+ Y+ K Y+ D I TAL+DM+ KCG +++ALL+F +EK+V WTAM
Sbjct: 237 DVGRWVYSYVCQSKGDYV---DSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAM 293
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+G+A+HG G + I + M D GVKPN VTF +L + C H+GLV EGL+ FD M+S +G
Sbjct: 294 LSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFG 353
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
VEP ++H+ C+VDLLGRAG +++A I +P +P+A +W SLL+AC V+ +V +GE
Sbjct: 354 VEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAA 413
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ L++ +P ++ L ++Y A RW +VE V+ +MK PG S+++
Sbjct: 414 QWLIKDEP--------WNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIE 465
Query: 472 T 472
Sbjct: 466 V 466
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 166/475 (34%), Positives = 248/475 (52%), Gaps = 35/475 (7%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLY--CTKKASPQSTKIVHFVF 66
F L + + SH H+ L AL S P A LI Y C AS + VF
Sbjct: 127 FFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCGLVASARK------VF 180
Query: 67 THFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+ +N++I + +++V VF + D+ + V LG+C L
Sbjct: 181 DEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGE---L 237
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
L LGR + V +RG N + + LI YA ++ S +++FD M R TWNA+I
Sbjct: 238 GDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVI 297
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+GY +Q+ A + A++LF M D V T+ VLS + +G L+ G + Y
Sbjct: 298 SGY-AQNGMADE----AILLFHGMKEDC--VTANKITLTAVLSACATIGALDLGKQIDEY 350
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ + ++D+F+ TAL+DMY+K G LDNA +F M +KN +W AM + +A HGK
Sbjct: 351 ASQRGF--QHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAK 408
Query: 303 EAIRLLDSMRD--CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EA+ L M D G +PN +TF L +AC HAGLV+EG LFD M + +G+ P I+HYS
Sbjct: 409 EALSLFQHMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYS 468
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLL RAGHL EA++ I +P KPD + +LL AC +V +GE+V +++L++ P
Sbjct: 469 CMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPS 528
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
S +++ S IYA+ W D +R M+ K + PG S ++ H
Sbjct: 529 --------NSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENH 575
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 208/404 (51%), Gaps = 32/404 (7%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPP---LYAQLIQLYCTKKASPQSTKIVHF 64
C L + +T + ++Q+H Q++ N+ P L ++ I L K P S+
Sbjct: 25 ECLVFLAKQCSSTKT-LQQVHTQMVVNSSIHTPNNHLLSKAIHL----KNFPYSS----L 75
Query: 65 VFTHFDP-PNLFLFNTLIRC--TPPQDSVLVFAYW--VSKGLLTFDDFTYVFALGSCARF 119
+F+H P PN + FN +IR T + L + + + LT D+FT+ F SCA
Sbjct: 76 LFSHIAPHPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANL 135
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
SLS H + K + A +LI YA ++S +KVFD++P R S +WN
Sbjct: 136 ASLSHACAA---HSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWN 192
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+MI GY CA A+ +FR+M G +P + ++V +L +LG LE G V
Sbjct: 193 SMIAGYAKAG-----CAREAVEVFREM-GRRDGFEPDEMSLVSLLGACGELGDLELGRWV 246
Query: 240 HGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
G+ +E+ + + +IG+AL+ MY+KCG L++A IF M ++V+TW A+ +G A +
Sbjct: 247 EGFVVERGMTL---NSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQN 303
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G +EAI L M++ V N +T T++ +AC G ++ G + D S+ G + I
Sbjct: 304 GMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQI-DEYASQRGFQHDIFV 362
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ ++D+ ++G L+ A +P K +A W +++SA HG
Sbjct: 363 ATALIDMYAKSGSLDNAQRVFKDMPQKNEAS-WNAMISALAAHG 405
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 163/520 (31%), Positives = 257/520 (49%), Gaps = 83/520 (15%)
Query: 23 HIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
IKQ+HA ++ L +LI + + T VF P+ F++NTLI
Sbjct: 23 QIKQVHALMVLQGFLSDSSALRELI--FASAVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 82 R----CTPPQDSVLVFAYWVSKG----LLTF--DDFTYVFALGSCARFCSLSTLWLGRQI 131
R P+D+V ++A L+T D T+ F L +CA + T G Q+
Sbjct: 81 RGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGET---GAQV 137
Query: 132 HVHVTKRG-----FMFNVLVA--------------------------TTLIHFYASNKDI 160
H HV K G F+ N L+ + +I +A DI
Sbjct: 138 HAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDI 197
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKA-----------KDC-AFNALV------- 201
+ +++FD+ P++ +WN MI Y A +D ++NA++
Sbjct: 198 GAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCG 257
Query: 202 -------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
LF M G KP TM+ +LS + G L+ G +HG++ F
Sbjct: 258 SRKQAMELFEQM--QAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTT 315
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+G AL+DMY+KCG + +AL +F M++KNV TW ++ G+A+HG E+I + M
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQG 375
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
VKP+ +TF ++ AAC H G+V++G F M+ ++ +EP+IKHY C+VD+L R G L+E
Sbjct: 376 NVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKE 435
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A+ FI + I+P+ ++WR+LL AC +HG++ L E + LL+ + + S DFV
Sbjct: 436 AFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSD--------ASGDFV 487
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
LSNIYAS WP E++RK M V E G +++ +++
Sbjct: 488 LLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVIDSSS 527
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 169/465 (36%), Positives = 243/465 (52%), Gaps = 35/465 (7%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQ---LIQLYCTKKASPQST-KIVHFVFTHFDPPN 73
IT+ S Q+HAQ+ LKSP Q L L+ SP H + N
Sbjct: 3 ITSLSQAMQLHAQI----LKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQN 58
Query: 74 LFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
F NT+IR P Q L + D FTY F L SCAR L +G
Sbjct: 59 SFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCAR---LKQPRVG 115
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+Q+H + K G + V+ LIH Y+S KVF +M R +W +MI+G+
Sbjct: 116 KQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDD 175
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
D A A+ LF +M+ D GV+P + T+V VL + G + G V G +E+
Sbjct: 176 -----DRALEAIRLFEEMVED--GVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKI 228
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E +V TAL+DMY+KCG + +A +F + K+V WTAM +G+A HG EA+ L
Sbjct: 229 GLEANVR--TALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLF 286
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
D M G++P+ T T++ +AC +AG EG F++M K+G++P I+HY C+VDLL R
Sbjct: 287 DQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLAR 346
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI--LLQLQPEVTFVDV 426
GHL+EA FI +PI+PD +LWR+L+ A VHGD+ E++ K LL++ +
Sbjct: 347 TGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSD------ 400
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
C S +V L N+YASA +W D +R+ M K + PG S ++
Sbjct: 401 DCGS--YVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIE 443
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/441 (35%), Positives = 237/441 (53%), Gaps = 38/441 (8%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYW 96
+Y++ +L C ++ VF +L +N++I R D+V +F
Sbjct: 170 MYSRCGELGCARR-----------VFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEM 218
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
G D+ T V LG+C L L LG I V + N V + LI Y
Sbjct: 219 RDAGFEP-DEMTLVSILGACG---DLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGK 274
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
D+SS ++VFD+M + TWNAMI GY + A++LF M SGV P
Sbjct: 275 CGDLSSARRVFDRMVKKDVVTWNAMITGYAQNG-----VSDEAIILFSGM--RESGVNPD 327
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+V VLS + +G L+FG + Y + +ND+++ TAL+DMY+KCG LD+AL +
Sbjct: 328 KITLVGVLSACASIGALDFGKWLDTYASERGL--QNDIYVSTALIDMYAKCGSLDDALRV 385
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAG 334
F M +KN ++W AM + +A HG+ E++ L M G V+PN ++F + +AC HAG
Sbjct: 386 FEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAG 445
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV+EG LFD M S +G+ P I+H+SC+VDLL RAGH+ EA++FI +P KPD ++ +L
Sbjct: 446 LVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGAL 505
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC +V + E+V +LL+++P S +++ S I+A+ +RW D +R
Sbjct: 506 LGACQKRRNVDVSERVMHMLLEMEP--------LNSGNYIISSKIFANMKRWDDSARMRV 557
Query: 455 QMKVKRVETEPGSSILQTTTH 475
M+ + V PG S ++
Sbjct: 558 LMRQRGVTKTPGCSWIEIENQ 578
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 221/434 (50%), Gaps = 38/434 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
LK T+ ++QIH Q+I NA+ P L + I L AS +F+ PN
Sbjct: 38 LKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFIDLKDFNNAS--------LLFSQIPYPN 89
Query: 74 LFLFNTLIR--CTPPQ--DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ FN +IR T Q + + F Y + + ++FTY F +CA L+ G+
Sbjct: 90 EYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNH---GQ 146
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
H V K G + V +LI Y+ ++ ++VFD++ + +WN+MI+GY
Sbjct: 147 CAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMG 206
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
A +A+ LF +M +G +P + T+V +L LG L G+ + G++ +
Sbjct: 207 Y-----AGDAVGLFGEM--RDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVEN--- 256
Query: 250 PENDV--FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
E D+ F+G+AL+ MY KCG L +A +F RM +K+V+TW AM TG A +G +EAI L
Sbjct: 257 -EMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIIL 315
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
MR+ GV P+ +T + +AC G ++ G L D S+ G++ I + ++D+
Sbjct: 316 FSGMRESGVNPDKITLVGVLSACASIGALDFGKWL-DTYASERGLQNDIYVSTALIDMYA 374
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG----DVALGEKVGKILLQLQP-EVT 422
+ G L++A +P K + + W +++SA HG ++L +++ K ++P +++
Sbjct: 375 KCGSLDDALRVFEDMPQK-NEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDIS 433
Query: 423 FVDV--ACTSEDFV 434
F+ V AC V
Sbjct: 434 FIGVLSACVHAGLV 447
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 253/485 (52%), Gaps = 60/485 (12%)
Query: 24 IKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
++QIHAQ I + L PP +L+ Y S VF P++F +N +IR
Sbjct: 41 VRQIHAQFIVSGLLARPPNAGRLLDSY----VSMSQIYYALLVFNRIPSPDVFAYNAMIR 96
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
P DS+L++ + LT D++TY F L C+ L ++ G+Q+H V K
Sbjct: 97 GLTLGNCPYDSLLLYNKLLLG-GLTPDNYTYTFVLKVCSH---LKAIFEGKQVHCQVIKA 152
Query: 139 GFMFNVLVATTLIHFYA-------------------------------SNKDISSGKKVF 167
G + + T+LIH YA S + + +F
Sbjct: 153 GVAPDTHIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISGYMSQGHVEKARAMF 212
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML-VDVSGVKPTDTTMVCVLSV 226
D+M + +ATW+ MI GY + ALV+FR+M+ V SGV+P ++ +V LS
Sbjct: 213 DKMGAKDAATWSGMITGYTKNGMHEE-----ALVMFREMMMVSNSGVQPNESALVSSLSA 267
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
++ LG L+ G +H Y+ + + + +GT LVDMY+KCG + + +F M++++V+
Sbjct: 268 TACLGALDQGRWIHAYIRRIG--AKISITLGTGLVDMYAKCGSIHCSYKLFREMQQRDVV 325
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TW M +G A+HG+ + +L D M G +PN V F ++ +AC HAG +E G H F+ M
Sbjct: 326 TWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAILSACSHAGYLELGHHYFNQM 385
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ +G+ P ++HY C+VDLLGRAG L EA I+ +P +P A++W +LLSAC +H D+
Sbjct: 386 VTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELIISMPEEPTAVIWGALLSACRIHKDLRR 445
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
G + + L+QL+P + + +++SA + ++V + +K +ET G
Sbjct: 446 GRRAFRQLMQLEP--------LRGDRYKLAGQMFSSAGEKEEADNVTRFIKENELETTRG 497
Query: 467 SSILQ 471
SS ++
Sbjct: 498 SSFIE 502
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 267 bits (683), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 133/329 (40%), Positives = 202/329 (61%), Gaps = 17/329 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+++ +A+ I +K FDQ+P R +W AMI+GY ++ AL L
Sbjct: 273 DVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNR-----FIEALAL 327
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M +S VKP + TMV +L+ + LG LE G V Y++K +ND F+G AL+D
Sbjct: 328 FREM--QMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSI--KNDTFVGNALID 383
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG + A +F M K+ TWTAM G+AI+G G EA+ + +M + + P+ +T
Sbjct: 384 MYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEIT 443
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ + AC HAG+VE+G F +M + G++P++ HY C+VDLLGRAG LEEA+ I+ +
Sbjct: 444 YIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNM 503
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+KP++I+W SLL AC VH +V L E K +L+L+PE V +V L NIYA+
Sbjct: 504 PVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAV--------YVLLCNIYAA 555
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
+RW ++ VRK M + ++ PG S+++
Sbjct: 556 CKRWENLRQVRKLMMERGIKKTPGCSLME 584
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 121/449 (26%), Positives = 205/449 (45%), Gaps = 62/449 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPPNLFLFNTL 80
+KQIH+ I L S PL+ + + +C + +S K+++ VF P LF++NT+
Sbjct: 22 QLKQIHSHTIKMGLSSDPLFQKRVIAFC---CAHESGKMIYARQVFDAIPQPTLFIWNTM 78
Query: 81 I----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I R PQ+ V ++ ++ + D FT+ F L R +L G+ + H
Sbjct: 79 IKGYSRINHPQNGVSMYLLMLASNIKP-DRFTFPFLLKGFTRNMALQ---YGKVLLNHAV 134
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKD 194
K GF N+ V IH ++ + + +KVFD TWN M++GY Q KK+K
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSK- 193
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
+LF +M + GV P T+V +LS S+L LE G ++ Y+ + E ++
Sbjct: 194 ------MLFIEM--EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGG--IVERNL 243
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN------------ 302
+ L+DM++ CG +D A +F M+ ++V++WT++ TG A G+ +
Sbjct: 244 ILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPER 303
Query: 303 -------------------EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
EA+ L M+ VKP+ T S+ AC H G +E G
Sbjct: 304 DYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWV 362
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVH 401
K ++ + ++D+ + G++ +A + K D W +++ A N H
Sbjct: 363 KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKFTWTAMIVGLAINGH 421
Query: 402 GDVALGEKVGKILLQLQP-EVTFVDVACT 429
G+ AL I + P E+T++ V C
Sbjct: 422 GEEALAMFSNMIEASITPDEITYIGVLCA 450
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 167/466 (35%), Positives = 247/466 (53%), Gaps = 35/466 (7%)
Query: 19 TTPSHIKQIHAQLIT--NALKSPPLYAQLIQLYCTKKAS--PQSTKIVHFVFTHF-DPPN 73
T+ + Q+HA + L++ P + + CT++ + P VF P +
Sbjct: 39 TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98
Query: 74 LFLFNTLIRCTPPQDSVL--------VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
+ +NTL+R VF + +G+ D +T+V L +CA S
Sbjct: 99 VIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAP-DTYTFVSLLKACA---SARAG 154
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
GRQ H K G + VA TLI+ YA D+ + + +FD+M ++NAMI
Sbjct: 155 EEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITAS 214
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
S + ALVLFR+M G+KPT T++ VLS + LG LE G +H Y+ K
Sbjct: 215 VRSSLPGE-----ALVLFREM--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
++ V + TAL+DMY+KCG L++A+ +F M ++ W+ M A HG G EAI
Sbjct: 268 MRL--DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAI 325
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ + M+ G+KP+ VTF + AC H+G+V EGL FD+M+ ++G+ IKHY C+ DL
Sbjct: 326 SMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDL 384
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
L R+G LE AY FI +PIKP AILWR+LLSAC HGDV +G++V + +L+L
Sbjct: 385 LARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS----- 439
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V SN+ A+ RW ++ VRK M K V PG S ++
Sbjct: 440 ---HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIE 482
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 244/465 (52%), Gaps = 46/465 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L + +T + +KQ H+Q+I L + + +C S
Sbjct: 24 LYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKS---------------- 67
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+R ++ + +++ + K + + + FTY + +C C + G+QI
Sbjct: 68 -------GYLRWQLARNCIFMYSRMLHKSV-SPNKFTYPPLIRAC---CIDYAIEEGKQI 116
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR--SSATWNAMINGYCSQS 189
H HV K GF + LIH Y + + + ++VFD MP R +S +WNAMI Y +
Sbjct: 117 HAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSN 176
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ A LF M ++ V +LS + LG LE G +HGY+EK+
Sbjct: 177 R-----LHEAFALFDRMRLE--NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGI- 228
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E D + T ++DMY KCGCL+ A +F+ + +K + +W M G+A+HGKG AI L
Sbjct: 229 -ELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFK 287
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M V P+ +TF ++ +AC H+GLVEEG H F M G++P ++H+ C+VDLLGRA
Sbjct: 288 EMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRA 347
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G LEEA I +P+ PDA + +L+ AC +HG+ LGE++GK +++L+P
Sbjct: 348 GLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPH--------N 399
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
S +V L+N+YASA RW DV VRK M + V+ PG S++++ +
Sbjct: 400 SGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESES 444
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 210/353 (59%), Gaps = 19/353 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F + + R + ++ KR +V+ TT+I YA + + +FD MP + W
Sbjct: 388 FVKCGEVEIARGLFDNMEKR----DVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N +I+GY QS + K+ AL +FR++ + SG +P T++ LS +QLG ++ G
Sbjct: 444 NVLISGY-EQSGRPKE----ALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEW 498
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+HGY++K + + T+L+DMYSK G ++ A+ +F + K+V W+AM G+A+H
Sbjct: 499 IHGYIKKERIQLNRN--LATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMH 556
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+G AI L M++ VKPN+VTFT+L AC H+GLV+EG LFD M+ +GV P KH
Sbjct: 557 GRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKH 616
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VD+LGRAGHLEEA FI G+P+ P A +W +LL AC +HG++ L EK LL+++
Sbjct: 617 YSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIE 676
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P +V LSN+YA W V +R+QM+ ++ E G S ++
Sbjct: 677 P--------GNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIE 721
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 120/457 (26%), Positives = 199/457 (43%), Gaps = 67/457 (14%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T+ +KQIHAQ++ TN L P YA +S + VF PNL+ +
Sbjct: 150 TSFKQLKQIHAQMLRTNKLHDP--YAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSW 207
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA-RFCSLSTLWLGRQIH 132
N LIR + P SVLVF + + FT+ + + A R C L +G+ +H
Sbjct: 208 NILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFL----VGKAVH 263
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS--ATWNAMINGYCSQSK 190
K F +V V +LIHFYAS + VF+ + + +WN+M+ G+
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGY 323
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
K AL LF M + GV P TMV V+S ++ L G V Y+++ M
Sbjct: 324 PDK-----ALDLFERMRNE--GVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMM 376
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
++ + A +DM+ KCG ++ A +F M +++V++WT + G A + A + DS
Sbjct: 377 --NLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDS 434
Query: 311 M---------------------------------RDCGVKPNAVTFTSLFAACCHAGLVE 337
M G +P+ VT S +AC G ++
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G + +K K ++ + + ++D+ ++G +E+A I K D +W ++++
Sbjct: 495 IGEWIHGYIK-KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNK-DVFVWSAMIAG 552
Query: 398 CNVHGDVALGEKVGKILLQLQP------EVTFVDVAC 428
+HG GE ++ L +Q VTF ++ C
Sbjct: 553 LAMHGR---GEAAIELFLDMQETQVKPNSVTFTNLLC 586
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 14/289 (4%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI--HFYASNKDISSGKKVFDQM 170
+G A F ++ +QIH + + + + A+ L ++S + +KVFDQ+
Sbjct: 140 VGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQI 199
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
P + +WN +I + S ++++F ML D S P T ++ ++
Sbjct: 200 PQPNLYSWNILIRALATSSD-----PIQSVLVFIRMLHD-SPFGPNKFTFPVLIKAVAER 253
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR--EKNVLTW 288
G VHG KT + +DVF+ +L+ Y+ CG LD A L+F + K++++W
Sbjct: 254 RCFLVGKAVHGMAIKTSF--GDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSW 311
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+M TG G ++A+ L + MR+ GV PNAVT S+ +AC + G + D +
Sbjct: 312 NSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDR 371
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ ++ + +D+ + G +E A + K D + W +++
Sbjct: 372 N-EMMMNLNVCNATIDMFVKCGEVEIARGLFDNME-KRDVVSWTTIIDG 418
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 19/246 (7%)
Query: 61 IVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVF-AYWVSKGLLTFDDFTYVFALGS 115
I +F ++ +N LI + P++++ +F ++K D T + L +
Sbjct: 427 IARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSA 486
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
CA+ ++ +G IH ++ K N +AT+LI Y+ + D+ +VF + +
Sbjct: 487 CAQLGAMD---IGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDV 543
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
W+AMI G + A+ LF DM + VKP T +L S GL++
Sbjct: 544 FVWSAMIAGLAMHGRGEA-----AIELFLDM--QETQVKPNSVTFTNLLCACSHSGLVDE 596
Query: 236 GACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMAT 293
G + ME+ + +P+ + + +VD+ + G L+ AL M + W A+
Sbjct: 597 GKRLFDEMERVYGVVPKTKHY--SCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLG 654
Query: 294 GMAIHG 299
IHG
Sbjct: 655 ACCIHG 660
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 167/466 (35%), Positives = 247/466 (53%), Gaps = 35/466 (7%)
Query: 19 TTPSHIKQIHAQLIT--NALKSPPLYAQLIQLYCTKKAS--PQSTKIVHFVFTHF-DPPN 73
T+ + Q+HA + L++ P + + CT++ + P VF P +
Sbjct: 39 TSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGD 98
Query: 74 LFLFNTLIRCTPPQDSVL--------VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
+ +NTL+R VF + +G+ D +T+V L +CA S
Sbjct: 99 VVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAP-DTYTFVSLLKACA---SARAG 154
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
GRQ H K G + VA TLI+ YA D+ + + +FD+M ++NAMI
Sbjct: 155 EEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMITAS 214
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
S + ALVLFR+M G+KPT T++ VLS + LG LE G +H Y+ K
Sbjct: 215 VRSSLPGE-----ALVLFREM--QAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRK 267
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
++ V + TAL+DMY+KCG L++A+ +F M ++ W+ M A HG G EAI
Sbjct: 268 MRL--DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAI 325
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ + M+ G+KP+ VTF + AC H+G+V EGL FD+M+ ++G+ IKHY C+ DL
Sbjct: 326 SMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMR-EYGIVSGIKHYGCVTDL 384
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
L R+G LE AY FI +PIKP AILWR+LLSAC HGDV +G++V + +L+L
Sbjct: 385 LARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDS----- 439
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V SN+ A+ RW ++ VRK M K V PG S ++
Sbjct: 440 ---HGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIE 482
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/491 (32%), Positives = 252/491 (51%), Gaps = 63/491 (12%)
Query: 23 HIKQ---IHAQLITNALKSPPLYAQLIQLYCTK-KASPQSTKIVHFVFTHFDPPNLFLFN 78
HI Q IHAQLI N P + C+K A +++I F +TH PN++L+
Sbjct: 61 HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI--FQYTH--NPNVYLYT 116
Query: 79 TLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
LI D++ +++ + +L D++ L +C S L GR++H
Sbjct: 117 ALIDGFVSSGNYFDAIQLYSRMLHDSILP-DNYLMASILKACG---SQLALREGREVHSR 172
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP----------------------- 171
K G N LV ++ Y ++ ++VF++MP
Sbjct: 173 ALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAG 232
Query: 172 -------MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+ + W AMI+G+ + + AL FR M + V+P + T+VCVL
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGFVRNEEMNR-----ALEAFRGMQGE--NVRPNEFTIVCVL 285
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S SQLG LE G VH YM K + E ++F+G AL++MYS+CG +D A +F M++++
Sbjct: 286 SACSQLGALEIGRWVHSYMRK--FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 343
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+T+ M +G++++GK +AI L M ++P VTF + AC H GLV+ G +F
Sbjct: 344 VITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFH 403
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M +GVEP I+HY C+VDLLGR G LEEAY+ I + + PD I+ +LLSAC +H ++
Sbjct: 404 SMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNL 463
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE+V K+L S +V LS++YAS+ +W + VR +MK ++ E
Sbjct: 464 ELGEQVAKVLEDRG--------QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 515
Query: 465 PGSSILQTTTH 475
PG S ++
Sbjct: 516 PGCSSIEVNNE 526
>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Glycine max]
Length = 604
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/466 (32%), Positives = 251/466 (53%), Gaps = 31/466 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + KQ+HA ++ L + C + S + +F + P
Sbjct: 37 LKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCAL-SRWGSMEYACSIFRQIEEPGS 95
Query: 75 FLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +NT+IR ++++L++ + +G+ D+FTY F L +C+ L L G Q
Sbjct: 96 FEYNTMIRGNVNSMNLEEALLLYVEMLERGIEP-DNFTYPFVLKACSL---LGALKEGVQ 151
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH HV K G +V V LI+ Y I VF+QM +S A+W+++I + S +
Sbjct: 152 IHAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHAS-VE 210
Query: 191 KAKDCAFNALVLFRDMLVDVSGV---KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+C +L D+SG + ++ +V LS + LG FG C+HG + +
Sbjct: 211 MWHECLM--------LLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRN- 261
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E +V + T+L+DMY K G L+ L +F M +KN ++T + TG+AIHG+G EA+ +
Sbjct: 262 -ISELNVAVKTSLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSV 320
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M + G+ P+ V + + +AC HAGLV EGL F+ ++ + ++P I+HY C+VDL+G
Sbjct: 321 FSDMLEEGLAPDDVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMG 380
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+ AY+ I +PIKP+ ++WRSLLSAC VH ++ +GE + + +L
Sbjct: 381 RAGMLKGAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQH------- 433
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
D++ L+N+YA A++W DV +R +M K + PG S+++
Sbjct: 434 -NPGDYLVLANMYARAKKWADVARIRTEMAEKHLVQTPGFSLVEAN 478
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 261/523 (49%), Gaps = 78/523 (14%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
IKQ+HA ++ S P + + L+ + A + + VF P+LF++NTLIR
Sbjct: 23 QIKQVHALMVLRGFLSDPSALREL-LFASAVAVRGAIAHAYLVFDQIPRPDLFMYNTLIR 81
Query: 83 ----CTPPQDSVLVFAYWVSKGL---LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
P+D+V ++A +G + D T+ F L +C + T G Q+H HV
Sbjct: 82 GAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGT---GAQVHAHV 138
Query: 136 TKRGFMFNVLVATTLIHFYAS-------------------------------NKDISSGK 164
K G + V LI +AS DI + +
Sbjct: 139 VKAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAAR 198
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKA-----------KDC-AFNALV----------- 201
K+FD+ P++ +WN MI Y + + A +D ++NA++
Sbjct: 199 KLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVY 258
Query: 202 ---LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
LF M G KP TM+ +LS + G ++ G +H + + F V +G
Sbjct: 259 AMELFEQM--QRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGN 316
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+DMY+KCG + +AL +F MR+K+V TW ++ G+A+HG E+I + M V+P
Sbjct: 317 ALIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRP 376
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ +TF ++ AC H G+V++G F+ M+ + +EP++KHY C+VD+LGRAG L+EA+ F
Sbjct: 377 DEITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEF 436
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + ++P++++WR+LL AC VHG++ L E + LL+ + + S D+V LSN
Sbjct: 437 IDTMKVEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARND--------ESGDYVLLSN 488
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDGF 481
IYASA W + E +RK M V + G +++ + + F
Sbjct: 489 IYASAGEWSESEKMRKLMDDSGVNKQAGRTVVDGSAKDLMQSF 531
>gi|15228026|ref|NP_181211.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216191|sp|Q9ZQA1.1|PP188_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36730
gi|4415918|gb|AAD20149.1| hypothetical protein [Arabidopsis thaliana]
gi|330254198|gb|AEC09292.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 501
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 256/476 (53%), Gaps = 40/476 (8%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFV 65
H+C LKL ++ H+ QIH Q+ ++L++ + ++L+++ A + +
Sbjct: 14 HQCLIFLKL--CSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLA--KDLAFARTL 69
Query: 66 FTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
H +N L R P +S+ V++ +G+ + T+ F L +CA F
Sbjct: 70 LLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKP-NKLTFPFLLKACASFLG 128
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L+ GRQI V V K GF F+V V LIH Y + K S +KVFD+M R+ +WN++
Sbjct: 129 LTA---GRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSI 185
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK--PTDTTMVCVLSVSSQLGLLEFGACV 239
+ K L L + ++ G + P +TTMV +LS G L G V
Sbjct: 186 MTALVENGK---------LNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLV 234
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H + E + +GTALVDMY+K G L+ A L+F RM +KNV TW+AM G+A +G
Sbjct: 235 HS--QVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYG 292
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA++L M ++ V+PN VTF + AC H GLV++G F M+ ++P + H
Sbjct: 293 FAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIH 352
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH---GDVALGEKVGKILL 415
Y +VD+LGRAG L EAY+FI +P +PDA++WR+LLSAC++H D +GEKV K L+
Sbjct: 353 YGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLI 412
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L+P+ S + V ++N +A A W + VR+ MK +++ G S L+
Sbjct: 413 ELEPK--------RSGNLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLE 460
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/458 (34%), Positives = 252/458 (55%), Gaps = 34/458 (7%)
Query: 23 HIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++Q+HA LI T+ +S L +LI L C+ +A H +F P+ FLFN++I
Sbjct: 24 QLQQVHAHLIVTSYGRSRSLLTKLITLACSARA----IAYTHLLFLSVPLPDDFLFNSVI 79
Query: 82 RCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ T P V + +S + + ++T+ + SCA LS L +G+ +H H
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNV-SPSNYTFTSVIKSCA---DLSALKIGKGVHCHAVV 135
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + V L+ FY+ D+ + ++VFD+MP +S WN++++G+ Q+ A+D
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGF-EQNGLAED--- 191
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A+ +F M SG +P T V +LS +Q G + G+ VH Y+ + +V +G
Sbjct: 192 -AIRVFYQM--RESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGL--DVNVKLG 246
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGV 316
TAL+++YS+CG + A +F +M+E NV WTAM + HG G +A+ L + M D CG
Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGS 306
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
PN VTF ++ +AC HAGLVE+G ++ M + + P ++H+ CIVD+LGRAG L+EAY
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAY 366
Query: 377 NFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
FI + +A LW ++L AC +H + LG ++ K L+ L+PE
Sbjct: 367 RFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPE--------NPGHH 418
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYA + + +V +R +M + + G SI++
Sbjct: 419 VMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIE 456
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/455 (35%), Positives = 252/455 (55%), Gaps = 30/455 (6%)
Query: 24 IKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+ Q+HA +I + +S L +L+ L C + + +I F P+ FLF +LI+
Sbjct: 28 LHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQI----FLAVPNPDSFLFTSLIK 83
Query: 83 CTPPQDSVLVFA-YWVSKGLLTF---DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
T + +++ Y+ S+ +L+ ++T+ + SCA LS L GR +H HV
Sbjct: 84 STSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCA---DLSALKHGRVVHGHVLVH 140
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF +V V L+ Y D+ + +KVFD++ RS WN+MI+GY Q+ AK+
Sbjct: 141 GFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGY-EQNGFAKE---- 195
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ LF M +GV+P T V VLS + LG G VH Y+ + +V +GT
Sbjct: 196 AIGLFDRM--KETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGL--DLNVVLGT 251
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L++MY +CG + A +F M+E+NV+ WTAM +G +G G++A+ L MR G+ P
Sbjct: 252 SLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFP 311
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N++TF ++ +AC HAGLV EG LF +++ ++ + P ++H C+VD+LGRAG L+EAYNF
Sbjct: 312 NSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNF 371
Query: 379 IM-GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I IP P + ++L AC +H + LG +V + LL +PE +V LS
Sbjct: 372 IKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPE--------NPAHYVILS 423
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
NIYA A R VE VR M K ++ + G S ++
Sbjct: 424 NIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEV 458
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 147/279 (52%), Gaps = 12/279 (4%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L+L Q+H H+ G+ + + T L++ + IS +++F +P S + ++I
Sbjct: 25 LYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIK- 83
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-M 243
+ K+ + + +L + M+ +S V P++ T V+ + L L+ G VHG+ +
Sbjct: 84 ---STSKSHNFSIYSLYFYSRMV--LSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVL 138
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
F + DV++ ALV +Y KCG L NA +F ++RE++++ W +M +G +G E
Sbjct: 139 VHGFGL---DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKE 195
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
AI L D M++ GV+P++ TF S+ +AC H G G + + + G++ ++ + ++
Sbjct: 196 AIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGN-GLDLNVVLGTSLI 254
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++ R G++ +A + + + + W +++S +G
Sbjct: 255 NMYIRCGNVSKAREVFDSMK-ERNVVAWTAMISGYGTNG 292
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/368 (40%), Positives = 207/368 (56%), Gaps = 19/368 (5%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
D V L +C+R +S + +H V K+GF ++ V TL+ YA
Sbjct: 1249 LDSVVMVSVLSACSR---VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 1305
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
KKVFD M + +WN+MI Y + AL +F M+ V GV+ T+ V
Sbjct: 1306 KKVFDWMEEKDDISWNSMIAVYAQSGLSGE-----ALEVFHGMVRHV-GVRYNAVTLSAV 1359
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + G L G C+H + K E +V +GT+++DMY KCG ++ A F RM+EK
Sbjct: 1360 LLACAHAGALRAGKCIHDQVIKMDL--EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK 1417
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV +WTAM G +HG+ EA+ + M GVKPN +TF S+ AAC HAGLVEEG H F
Sbjct: 1418 NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWF 1477
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ MK K+ +EP I+HY C+VDL GRAG L EAYN I + +KPD ++W SLL AC +H +
Sbjct: 1478 NAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKN 1537
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V LGE + L +L P+ +V LSN+YA A RW DVE +R MK +++
Sbjct: 1538 VDLGEIAAQKLFELDPD--------NCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVK 1589
Query: 464 EPGSSILQ 471
PG S+++
Sbjct: 1590 PPGFSLVE 1597
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 198/402 (49%), Gaps = 53/402 (13%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHF 69
AL L+ H++QIHA++I + L + L +LI LY T + +F
Sbjct: 30 ALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAI----LLFYQI 85
Query: 70 DPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
P F +N +IR + +++++ V +G+ D FT+ F + +C F S+
Sbjct: 86 QNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA-DKFTFPFVIKACTNFLSID-- 142
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFY------------------------------- 154
LG+ +H + K GF +V V LI FY
Sbjct: 143 -LGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGL 201
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
S D+ +++FD++P ++ +W AMINGY + + AL LF+ M + +
Sbjct: 202 ISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEE-----ALELFKRMQAE--NIF 254
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P + TMV ++ +++G+L G +H Y K E V++GTAL+DMYSKCG + +A+
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCI--EIGVYLGTALIDMYSKCGSIKDAI 312
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M K++ TW +M T + +HG G EA+ L M VKP+A+TF + AC H
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
V+EG F M +G+ P +HY C+ +L R+ +L+EA+
Sbjct: 373 NVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 190/393 (48%), Gaps = 29/393 (7%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S+ + + + + D N+ +N++I R +++ F+ GL+ ++ +
Sbjct: 1091 SSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS-SFPCTI 1149
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
SC+ C L + GR H GF ++ V++ LI Y+ + + +FD++P+R
Sbjct: 1150 KSCSALCDLVS---GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLR 1206
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK-----PTDT-TMVCVLSVS 227
+ +W +MI GY + A NAL+LF+D L + + V+ P D+ MV VLS
Sbjct: 1207 NVVSWTSMITGYVQNEQ-----ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSAC 1261
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
S++ VHG++ K + + + +G L+D Y+KCG + +F M EK+ ++
Sbjct: 1262 SRVSGKGITEGVHGFVVKKGF--DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDIS 1319
Query: 288 WTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
W +M A G EA+ + M R GV+ NAVT +++ AC HAG + G + D +
Sbjct: 1320 WNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQV 1379
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV-- 404
K +E ++ + I+D+ + G +E A + K + W ++++ +HG
Sbjct: 1380 -IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVAGYGMHGRAKE 1437
Query: 405 ALGEKVGKILLQLQPE-VTFVDV--ACTSEDFV 434
AL + ++P +TFV V AC+ V
Sbjct: 1438 ALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 1470
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 156/356 (43%), Gaps = 57/356 (16%)
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+F L +C F L RQIH + + G + L+ LIH Y+++ I+ +F Q
Sbjct: 31 LFLLQNCKNFKHL------RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQ 84
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+ + TWN +I ++ + AL+L+++M+ G+ T V+ +
Sbjct: 85 IQNPCTFTWNLII-----RANTINGLSEQALMLYKNMVCQ--GIAADKFTFPFVIKACTN 137
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-------- 281
++ G VHG + K Y DVF+ L+D Y KCG AL +F +MR
Sbjct: 138 FLSIDLGKVVHGSLIK--YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWT 195
Query: 282 -----------------------EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
KNV++WTAM G + + EA+ L M+ + P
Sbjct: 196 TVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP 255
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N T SL AC G++ G + D K +E + + ++D+ + G +++A
Sbjct: 256 NEYTMVSLIKACTEMGILTLGRGIHD-YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEV 314
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ-----PE-VTFVDVAC 428
+P K W S++++ VHG LG++ + +++ P+ +TF+ V C
Sbjct: 315 FETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSEMERVNVKPDAITFIGVLC 366
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 170/522 (32%), Positives = 267/522 (51%), Gaps = 82/522 (15%)
Query: 12 LLKLKAITTPSHIKQIHA-QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFT 67
LL K+ T+ H+KQ+HA L T + + L++ Y A+P + + +F VF
Sbjct: 34 LLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCY----ANPHFSNL-NFALKVFE 88
Query: 68 HFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+ PN+F+FN +I+ P ++ + Y + + FTY +C +
Sbjct: 89 YVPNPNVFVFNIIIKGCLQNNEPCKAICCY-YKMMIAHARPNKFTYPTLFKACT---AAE 144
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G Q+H HV K+G +V + + I Y S ++ +++ + +NAMI+
Sbjct: 145 AAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMID 204
Query: 184 GY--CSQSKKAKDC----------AFNALV--------------LFRDM----------L 207
GY C + + AK+ ++N +V LF +M +
Sbjct: 205 GYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAM 264
Query: 208 VD--VSG-----------------VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+D + G ++P + VL+ + LG L+ G +H Y+
Sbjct: 265 IDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNN-- 322
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
D +GTALVDMY+KCG LD A +F +M +K V TW AM G+ +HG+ +AI L
Sbjct: 323 SNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELF 382
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ +PN +T + +AC H+G+V+EGL +F++M+ +G+EP ++HY C+VDLLGR
Sbjct: 383 FKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGR 442
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L EA + +P++P A +W +LL AC HGDV LGE+VGKILL+L+P+
Sbjct: 443 AGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQ-------- 494
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
S + LSNIYA A RW DV +VRK MK + V+T G S++
Sbjct: 495 NSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMI 536
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 219/367 (59%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T V L +CAR L T +Q+H ++ + G F+ ++ + L+ Y +
Sbjct: 237 NEITLVNVLTACARSRDLET---AKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLAR 293
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F++MP ++ WN MING+ S + AL LF +M +SGVK TM +L
Sbjct: 294 DLFNKMPEKNLFCWNIMINGHVEDSDYEE-----ALSLFNEM--QLSGVKGDKVTMASLL 346
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG LE G +H Y+EK E DV +GTALVDMY+KCG +++A+ +F M EK+
Sbjct: 347 IACTHLGALELGKWLHVYIEKEKI--EVDVALGTALVDMYAKCGSIESAMRVFQEMPEKD 404
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWTA+ G+A+ G+G +A+ L M+ VKP+A+TF + AAC HAGLV EG+ F+
Sbjct: 405 VMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFN 464
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M +K+G++P I+HY C+VD+LGRAG + EA + I +P+ PD + LLSAC +HG++
Sbjct: 465 SMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNL 524
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ E+ + L++L P+ +V LSNIY+S + W + +R+ M + ++
Sbjct: 525 VVAERAAQQLIELDPK--------NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKP 576
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 577 PGCSAIE 583
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 214/445 (48%), Gaps = 46/445 (10%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
H C LL L+ TT S +KQIHAQ++ L P A I +C S S VF
Sbjct: 41 HPC--LLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDS-GSLPYARLVF 97
Query: 67 THFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
P F N++IR P+ ++L + + +GL D FT+ SC C
Sbjct: 98 NQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGL-DPDRFTFPSLFKSCGVLCE- 155
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
G+Q+H H TK GF + + TL++ Y++ + S +KVFD+M +S +W MI
Sbjct: 156 -----GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
Y D A+ LFR M +++ VKP + T+V VL+ ++ LE VH Y
Sbjct: 211 GAYAQW-----DLPHEAIKLFRRM--EIASVKPNEITLVNVLTACARSRDLETAKQVHKY 263
Query: 243 MEKT---FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
+++T F+ + +AL+D+Y KCGC A +F++M EKN+ W M G
Sbjct: 264 IDETGIGFH-----TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDS 318
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIK 357
EA+ L + M+ GVK + VT SL AC H G +E G LH++ K +E +
Sbjct: 319 DYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVY---IEKEKIEVDVA 375
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
+ +VD+ + G +E A +P K D + W +L+ + G G K ++ ++
Sbjct: 376 LGTALVDMYAKCGSIESAMRVFQEMPEK-DVMTWTALIVGLAMCGQ---GLKALELFHEM 431
Query: 418 Q-----PE-VTFVDV--ACTSEDFV 434
Q P+ +TFV V AC+ V
Sbjct: 432 QMSEVKPDAITFVGVLAACSHAGLV 456
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/472 (34%), Positives = 252/472 (53%), Gaps = 35/472 (7%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFT 67
LL L + T S +KQ+HAQ I P LY++++ +S + VF
Sbjct: 30 LLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHF-----SSLHDLRYAFRVFH 84
Query: 68 HFDPPNLFLFNTLIRCTP-----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+ PN F++N LIR Q ++ ++ + +G + D T+ F L +CA +L
Sbjct: 85 QIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFAL 144
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S G QIH + K GF +V + +L+HFYA+ + K VFD+M RS +WN +I
Sbjct: 145 SE---GEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVI 201
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+ + + D A N LF +M +P T+ + + + +G L G H +
Sbjct: 202 DAFVRFGEF--DAALN---LFGEMQ---KFFEPDGYTIQSIANACAGMGSLSLGMWAHVF 253
Query: 243 MEKTFYMPE-NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K F NDV + T+LVDMY KCG L+ AL +F RM +++V +W +M G + HG+
Sbjct: 254 LLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEV 313
Query: 302 NEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
A+ M R + PNA+TF + +AC H GLV EG FD M +++ ++P ++HY
Sbjct: 314 AAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYG 373
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA-CNVHGDVALGEKVGKILLQLQP 419
C+VDLL RAG ++EA + + +P++PD ++WRSLL A C + V L E++ + +L+ +
Sbjct: 374 CLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEG 433
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V S +V LS +YASA RW DV VRK M K V EPG S ++
Sbjct: 434 GV-------CSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIE 478
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/359 (40%), Positives = 205/359 (57%), Gaps = 19/359 (5%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+ +CAR C S + +H K+GF + V TL+ YA +IS +KVFD M
Sbjct: 205 ISACARVCVKS---VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEE 261
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
+WN++I Y + A LF DM V V+ T+ VL + G
Sbjct: 262 TDVCSWNSLIAVYAQNG-----LSVEAFSLFSDM-VKRGEVRYNAVTLSAVLLACAHSGA 315
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L+ G C+H + K E+++ +GT++VDMY KCG ++ A F R++ KNV +WT M
Sbjct: 316 LQIGKCIHDQVVKM--ELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMV 373
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G +HG G EA+++ M CG+KPN +TF S+ AAC HAGL++EG H F+ MK ++ V
Sbjct: 374 AGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDV 433
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
EP I+HYSC+VDLLGRAG+L+EAY I + +KPD I+W SLL AC +H +V LGE +
Sbjct: 434 EPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISAR 493
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P +V LSNIYA A RW DVE +R MK + PG SI++
Sbjct: 494 KLFKLDPS--------NCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVE 544
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 174/340 (51%), Gaps = 33/340 (9%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ + SC+ SL L G+QIH G+ ++ VA+ LI Y+ ++ +K+F
Sbjct: 88 TFPCTIKSCS---SLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLF 144
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD-MLVDVSGVKP-------TDTT 219
D++P R+ +W +MI+GY Q+++A++ F LF++ +LVD + D+
Sbjct: 145 DEIPERNVVSWTSMISGYV-QNERAREAVF----LFKEFLLVDETDYDEIVGVGVGVDSV 199
Query: 220 MV-CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
++ CV+S +++ + CVHG K + E + +G L+D Y+KCG + + +F
Sbjct: 200 LLGCVISACARVCVKSVTECVHGLAVKKGF--EGCLAVGNTLMDAYAKCGEISVSRKVFD 257
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVE 337
M E +V +W ++ A +G EA L M G V+ NAVT +++ AC H+G ++
Sbjct: 258 GMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQ 317
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G + D + K +E ++ + IVD+ + G +E A + + + W +++
Sbjct: 318 IGKCIHDQV-VKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK-RKNVKSWTVMVAG 375
Query: 398 CNVHGDVALGEKVGKILLQL-----QPE-VTFVDV--ACT 429
+HG G++ K+ ++ +P +TFV V AC+
Sbjct: 376 YGMHGH---GKEAMKVFYEMIRCGIKPNYITFVSVLAACS 412
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 26/236 (11%)
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
S +WN++I + + AL F M + P +T C + S L L
Sbjct: 50 SVYSWNSIIADFARSGD-----SLQALYAFSSM--RKLSLHPNRSTFPCTIKSCSSLYDL 102
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
G +H + + +D+F+ +AL+DMYSKCG L++A +F + E+NV++WT+M +
Sbjct: 103 CAGKQIH--QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMIS 160
Query: 294 GMAIHGKGNEAIRLL-----------DSMRDCGVKPNAVTFTSLFAACCHAGL--VEEGL 340
G + + EA+ L D + GV ++V + +AC + V E +
Sbjct: 161 GYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
H + K G E + + ++D + G + + G+ + D W SL++
Sbjct: 221 H---GLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIA 272
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 220/381 (57%), Gaps = 21/381 (5%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
VF + G L+ D+ T V AL C R L L LG++IH T GF+ +V V ++LI
Sbjct: 217 VFWELLGDGSLSPDEVTLVSALSVCGR---LGLLDLGKKIHGLFTGSGFVLDVFVGSSLI 273
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
Y+ I +KVFD++P R++ W +MI GY +QS K+ A+ LFR+M +
Sbjct: 274 DMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGY-AQSDLFKE----AIELFREM--QIG 326
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
G T+ CVLS G L G +H Y E+ E D+ AL+ MYSKCG +
Sbjct: 327 GFAADAATIACVLSACGHWGALAQGRWIHLYCERNSI--EMDLNARNALIGMYSKCGDIQ 384
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAAC 330
AL IF + + ++ +W+A+ +G+A++G+ ++A+ L M ++PN +TF + AC
Sbjct: 385 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 444
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H G V++GL+ F+ M + + P I+HY C+VDLLGRA L EA FI +PI+PD ++
Sbjct: 445 NHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVI 504
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
WRSLL AC HG++ L E K + +L+P C + V LSN+YASA RW DV+
Sbjct: 505 WRSLLFACRNHGNIELAEFAAKQIEELEPR------RCGAR--VLLSNVYASASRWGDVK 556
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
VRK M +R++ +PG S ++
Sbjct: 557 RVRKDMATQRIKKQPGCSFVE 577
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 219/435 (50%), Gaps = 36/435 (8%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
F+L L+ ++ P QI + I + + P+ + + Y + +F
Sbjct: 30 FSLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSL--SHDHDFAFSRTLFFQI 87
Query: 70 DPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
PN+F +N + R P +++ ++ + G L D++++ F L +CAR LS L
Sbjct: 88 HKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLP-DNYSFPFVLKACAR---LSLL 143
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAMIN 183
GR+IH K G +V V LI ++S + + + VFD +P +R +WN+MI+
Sbjct: 144 HKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMIS 203
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY QS + + AL +F ++L D S + P + T+V LSV +LGLL+ G +HG
Sbjct: 204 GYL-QSHRYE----LALKVFWELLGDGS-LSPDEVTLVSALSVCGRLGLLDLGKKIHGLF 257
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ ++ DVF+G++L+DMYSKCG +++A +F R+ +N + WT+M G A E
Sbjct: 258 TGSGFVL--DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKE 315
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSC 361
AI L M+ G +A T + +AC H G + +G +HL+ S +E + +
Sbjct: 316 AIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNS---IEMDLNARNA 372
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ--- 418
++ + + G +++A G+ +PD W +++S ++G+ +K + Q++
Sbjct: 373 LIGMYSKCGDIQKALEIFHGL-TQPDIFSWSAVISGLAMNGE---SDKALHLFSQMEMIS 428
Query: 419 ----PEVTFVDVACT 429
E+TF+ V C
Sbjct: 429 DIRPNEITFLGVLCA 443
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 165/487 (33%), Positives = 248/487 (50%), Gaps = 52/487 (10%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T +KQ H +I L L C+ + + VFTH PN +L N
Sbjct: 26 TNLKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGH---LRYAYSVFTHQPFPNTYLHN 82
Query: 79 TLIRCTPPQD--SVLVFAYWVSKGLLTF----DDFTYVFALGSCARFCSLSTLWLGRQIH 132
T+IR D + A V + F D FT+ F L R +S +W GRQ+H
Sbjct: 83 TMIRALSLVDERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVR---VSDVWFGRQVH 139
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY------- 185
GF +V V T LI Y+S + +KVFD+M +R WNA++ GY
Sbjct: 140 GQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMD 199
Query: 186 --------------------CSQSKKAKDC-AFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
C S A+ A A+ +F+ ML++ V P + T++ VL
Sbjct: 200 EARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLME--NVDPDEVTLLAVL 257
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + LG LE G + Y++ V + A++DMY+K G + AL +F + E+N
Sbjct: 258 SACADLGSLELGERICSYVDHRGM--NRAVSLNNAVIDMYAKSGNITKALEVFESVNERN 315
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWT + TG+A HG G EA+ + D M GVKPN VTF ++ +AC H G V+ G F+
Sbjct: 316 VVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFN 375
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+SK+G+ P+I+HY C++DLLGRAG L EA I +P + +A +W SLL+A NVH D+
Sbjct: 376 SMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDI 435
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GE+ L++L+P S +++ L+N+Y++ RW + +RK MK V+
Sbjct: 436 DVGERALYQLIKLEPN--------NSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKL 487
Query: 465 PGSSILQ 471
G S ++
Sbjct: 488 AGESSIE 494
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 150/451 (33%), Positives = 251/451 (55%), Gaps = 29/451 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HAQ + + L +L+ LY + + + F NLFL+N LIR
Sbjct: 67 KQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNL----FDKIPKQNLFLWNVLIRG 122
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
P D+ ++ + + L D+FT F L +C+ +LS + GR IH +V K G+
Sbjct: 123 YAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACS---ALSAIGEGRSIHEYVIKSGW 179
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
++ V LI YA + +VFD++ +R + WN+M+ Y + ++
Sbjct: 180 ERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDE-----SI 234
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
L R+M + GV+PT+ T+V V+S S+ + L +G +HG+ + + + V TAL
Sbjct: 235 SLCREMAAN--GVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV--KTAL 290
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY+KCG + AL +F R+REK V++W A+ TG A+HG A+ L D MR +P+
Sbjct: 291 IDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDH 349
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF + AAC L++EG L++ M +G+ P ++HY+C++DLLG G L+EAY+ I
Sbjct: 350 ITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIR 409
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ +KPD+ +W +LL++C +HG+V L E + L++L+P+ S ++V L+N+Y
Sbjct: 410 NMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPD--------DSGNYVILANMY 461
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A + +W VE +R+ M KR++ S ++
Sbjct: 462 AQSGKWEGVEKLRQVMIDKRIKKNIACSWIE 492
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 166/328 (50%), Gaps = 20/328 (6%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+ Y L SC +L+ G+Q+H G +N +AT L+H YA + + + + +
Sbjct: 48 YGYTSLLQSCIDSKALNP---GKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNL 104
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD++P ++ WN +I GY NA++L+ ML G++P + T+ VL
Sbjct: 105 FDKIPKQNLFLWNVLIRGYAWNGPHD-----NAIILYHKML--DYGLRPDNFTLPFVLKA 157
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S L + G +H Y+ K+ + E D+F+G AL+DMY+KCGC+ +A +F ++ ++ +
Sbjct: 158 CSALSAIGEGRSIHEYVIKSGW--ERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAV 215
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
W +M A +G +E+I L M GV+P T ++ ++ + G +
Sbjct: 216 LWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIH-GF 274
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ G + + K + ++D+ + G ++ A + K + W ++++ +HG +A+
Sbjct: 275 GWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKR-VVSWNAIITGYAMHG-LAV 332
Query: 407 G--EKVGKILLQLQPE-VTFVDV--ACT 429
G + K+ + +P+ +TFV V AC+
Sbjct: 333 GALDLFDKMRKEDRPDHITFVGVLAACS 360
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 250/454 (55%), Gaps = 30/454 (6%)
Query: 24 IKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
+K++H + L+S L A I Y A S + VF D + +N L+
Sbjct: 326 LKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSER----VFDLMDTKTVSSWNALLC 381
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ + P+ ++ ++ GL D FT L +C+R + +L G +IH +
Sbjct: 382 GYAQNSDPRKALDLYLQMTDSGL-DPDWFTIGSLLLACSR---MKSLHYGEEIHGFALRN 437
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + + +L+ Y + + +FD M RS +WN MI GY SQ+ +
Sbjct: 438 GLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGY-SQNGLPDE---- 492
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ LFR ML D G++P + ++CV SQL L G +H + K ++ E D+F+ +
Sbjct: 493 AINLFRQMLSD--GIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA-HLTE-DIFVSS 548
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+++DMY+K GC+ + IF R+REK+V +W + G IHG+G EA+ L + M G+KP
Sbjct: 549 SIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKP 608
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ TFT + AC HAGLVE+GL F+ M + +EP ++HY+C+VD+LGRAG +++A
Sbjct: 609 DDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRL 668
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +P PD+ +W SLLS+C +HG++ LGEKV LL+L+PE E++V +SN
Sbjct: 669 IEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPE--------KPENYVLISN 720
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++A + +W DV VR +MK ++ + G S ++
Sbjct: 721 LFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEV 754
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 18/290 (6%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYW 96
L ++I +Y + SP +++V F NLF +N ++ R +D++ +F+
Sbjct: 36 LNTRIITMY-SMCGSPSDSRMV---FDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
+S D+FT + +CA L L LG+ IH TK + +V V LI Y
Sbjct: 92 ISVTEHKPDNFTLPCVIKACA---GLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGK 148
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+ KVF+ MP R+ +WN++I G+ + +FNA FR+MLV P
Sbjct: 149 CGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQE--SFNA---FREMLVGEESFVPD 203
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+V VL V + +E G VHG K E + + +L+DMYSKC L A L+
Sbjct: 204 VATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE--LMVNNSLIDMYSKCRFLSEAQLL 261
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
F + +KN+++W +M G A LL M+ K A FT L
Sbjct: 262 FDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTIL 311
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 163/331 (49%), Gaps = 21/331 (6%)
Query: 127 LGRQIHVHVTKR-GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+GR++H V+ F + ++ T +I Y+ S + VFD++ ++ WNA+++ Y
Sbjct: 16 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 75
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
++++ +D A+ +F + L+ V+ KP + T+ CV+ + L L G +HG K
Sbjct: 76 -TRNELFED----AMSIFSE-LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATK 129
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ +DVF+G AL+ MY KCG ++ A+ +F M E+N+++W ++ G + +G E+
Sbjct: 130 MDLV--SDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187
Query: 306 RLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
M + P+ T ++ C +E+G+ + + K G+ + + ++
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVH-GLAVKLGLNEELMVNNSLI 246
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
D+ + L EA + K + + W S++ DV + +L ++Q E
Sbjct: 247 DMYSKCRFLSEA-QLLFDKNDKKNIVSWNSMIGGYAREEDVC---RTFYLLQKMQTE--- 299
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRK 454
D +++F L+ + ER +++S+++
Sbjct: 300 -DAKMKADEFTILNVLPVCLER-SELQSLKE 328
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 227/401 (56%), Gaps = 23/401 (5%)
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
P+ F N ++R D+ L F + F+ LG C L RQ+
Sbjct: 95 PSTFRLNAILRSLRGPDA-LRFLRRARALGRRGNAFSLSIVLGHC------RALAHARQL 147
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H +V G + L+AT+L+ YA+ D S +KVFD+MP+R + WN +I Y +++++
Sbjct: 148 HANVVAEGHSPDALLATSLVSSYAACGDGDSARKVFDEMPVRDTIAWNVLITCY-TRNRR 206
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
KD AL LF M +G +P D T + +L + LG L+FG V Y Y E
Sbjct: 207 TKD----ALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGE 262
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ + +L+ MY+KCGC+D A +F +K+V+TW+AM +G+A +G G +AI + M
Sbjct: 263 --LKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEM 320
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV P+ TFT + +AC H+GLV+EG FD M ++ ++P++ HY C+VDL+GRAG
Sbjct: 321 GRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGL 380
Query: 372 LEEAYNFIM-GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY ++ + + PDA +WR+LL AC +HG + LGE+V L++L+ + +
Sbjct: 381 LDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQ--------QA 432
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V L N YA+ E W V VRK MK K ++T PG + ++
Sbjct: 433 GDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVE 473
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 245/463 (52%), Gaps = 24/463 (5%)
Query: 8 RCFALLKLKAITTP-SHIKQIHAQ-LITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFV 65
R ALL+ A + S Q+HAQ L+ L L L+ LY A ++ + V
Sbjct: 8 RLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRARE----V 63
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
F P++ +N L+ +PP +V + + V+ GL D ++ L +CA S L
Sbjct: 64 FDGMPSPSMHAYNVLLAASPPDAAVKLVSRLVASGLRP-DRYSVPAVLRACAE--SRDAL 120
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LG +H + G + NV+V+ L+ YA + +VFD+MP R + WN M+ GY
Sbjct: 121 -LGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAWNCMVTGY 179
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+ + L LFR ++ +G+ + VL+V + G L G +HG M +
Sbjct: 180 ARAGRSEE-----TLELFRKAQIESAGMARDLRAVPSVLNVCADEGQLMKGREIHGRMAR 234
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+D +G AL+DMY KCG +D A +F+ M EKNV++W+++ + +HG G EA+
Sbjct: 235 CL-ASSSDTVVGNALIDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVHGMGKEAL 293
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
R+ + M GVKPN VTF S+ ++C H+GLV +G +F++M+ VEP HY+C+VDL
Sbjct: 294 RVYEEMVSVGVKPNCVTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPTADHYACMVDL 353
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG +EEA + +P++P A LW +LLSAC +H +V +GE L +L+ +
Sbjct: 354 LGRAGAIEEAVGLVNEMPMEPGASLWGALLSACAIHNNVDVGEVAAYRLFELEED----- 408
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+ ++V L IY + R V +R +M+ + PG S
Sbjct: 409 ---NASNYVTLCGIYDAIGRSDSVAGLRSRMRELGMVKTPGCS 448
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 158/481 (32%), Positives = 246/481 (51%), Gaps = 52/481 (10%)
Query: 23 HIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++QIHAQ+I TN L ++LI +C+ VF+ PN F+F LI
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIA-FCSLSGVSGGLDYASSVFSRIQHPNSFIFFALI 79
Query: 82 R----CTPPQDSVLVFAYWVSKGLLTFD---DFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+ + P +S++++A +S L + +F+ L +C + + GRQ+H
Sbjct: 80 KGFSDTSNPVESLILYARMLS--CLNYSSGVEFSIPSVLKACGKLLAFDE---GRQVHGQ 134
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS------- 187
V K F+ V +++ Y +I ++VFD+MP R +WN+MI GY
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194
Query: 188 ----QSKKAKD---------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
++ KD C AL LFR+ML G++P +V VLS +
Sbjct: 195 KKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLS--LGLRPDGPAIVSVLSAIA 252
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLT 287
LG +E G +H Y+ + + FIG+AL+DMYSKCG ++NA +F + +N+
Sbjct: 253 DLGFVEEGKWLHAYVSMN-KIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGD 311
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W +M +G+AIHG EA+ + M ++PN +TF L + C H GLVEEG F++M
Sbjct: 312 WNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMH 371
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
K+ + P I+HY C++DL GRAG LE+A I +P + D + W+++LSA HG + +G
Sbjct: 372 EKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIG 431
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
+ ++L P+ S +V LSNIYA A RW DV +R M+ + V+ G
Sbjct: 432 KSAALRAIELAPD--------DSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGC 483
Query: 468 S 468
S
Sbjct: 484 S 484
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 259/466 (55%), Gaps = 34/466 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
K +T + Q+HA +I ++ + +LI + +V VF + +
Sbjct: 62 FKQCSTLKDLNQLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVV--VFDRIENAD 119
Query: 74 LFLFNTLIRCTPPQDSVLV-FAYW---VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
FL+NT+IR +L+ F ++ + KG+ D+FT+ F L + L ++ LG+
Sbjct: 120 GFLWNTMIRGFGRNRKLLMAFEFYKRMLEKGIAA-DNFTFSFLLKMTGQ---LGSIMLGK 175
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
Q+HV++ K G +V V TLIH Y KD++ + +FD++P WNA+I+ + S
Sbjct: 176 QLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVS-- 233
Query: 190 KKAKDCAF--NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
C AL LF ML SGV+P + T+V +S S LG L+ G VH ++
Sbjct: 234 -----CGMYNEALDLFVQMLQ--SGVEPDEATLVVTISACSALGALDCGRWVHSHVNSND 286
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
VF +L+DMY+KCG ++ A +F+ + KN++TW M G+A HG +A+ L
Sbjct: 287 RGKTIAVF--NSLIDMYAKCGAVEYAREMFNAVSGKNIVTWNTMIMGLATHGDAEDALTL 344
Query: 308 LDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+M V+ P+ VTF ++ AC + G VEEG FD M + ++P +KHY +VD+L
Sbjct: 345 FSNMLAERVETPDGVTFLAVLCACNYGGKVEEGRRYFDLMTKHFNIQPTLKHYGSMVDIL 404
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG +EEAY I +P++ +A++WR+LL+AC +HG+V LGE+V +L++ V
Sbjct: 405 GRAGFVEEAYQLIKSMPMECNAVIWRTLLAACQMHGNVELGERVSSHVLEI--------V 456
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET-EPGSSILQ 471
A S D+V L+N+YAS+ +W ++ RK M K VE EPG+S L+
Sbjct: 457 ADHSSDYVLLANMYASSGQWNEMIKTRKSMHRKGVEKPEPGNSYLE 502
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 208/368 (56%), Gaps = 19/368 (5%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
D V L +C+R +S + +H V K+GF ++ V TL+ YA
Sbjct: 2122 LDSVVMVSVLSACSR---VSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
KKVFD M + +WN+MI Y + AL +F M+ V GV+ T+ V
Sbjct: 2179 KKVFDWMEEKDDISWNSMIAVYAQSGLSGE-----ALEVFHGMVRHV-GVRYNAVTLSAV 2232
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + G L G C+H + K E +V +GT+++DMY KCG ++ A F RM+EK
Sbjct: 2233 LLACAHAGALRAGKCIHDQVIKMDL--EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK 2290
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV +WTAM G +HG+ EA+ + M GVKPN +TF S+ AAC HAGLVEEG H F
Sbjct: 2291 NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWF 2350
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ MK K+ +EP I+HY C+VDL GRAG L EAYN I + +KPD ++W SLL AC +H +
Sbjct: 2351 NAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKN 2410
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V LGE + L +L P+ C +V LSN+YA A RW DVE +R MK +++
Sbjct: 2411 VDLGEIAAQKLFELDPD------NCGY--YVLLSNLYADAGRWADVERMRMLMKNRQLVK 2462
Query: 464 EPGSSILQ 471
PG S+++
Sbjct: 2463 PPGFSLVE 2470
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 198/402 (49%), Gaps = 53/402 (13%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHF 69
AL L+ H++QIHA++I + L + L +LI LY T + +F
Sbjct: 30 ALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAI----LLFYQI 85
Query: 70 DPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
P F +N +IR + +++++ V +G+ D FT+ F + +C F S+
Sbjct: 86 QNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA-DKFTFPFVIKACTNFLSID-- 142
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFY------------------------------- 154
LG+ +H + K GF +V V LI FY
Sbjct: 143 -LGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGL 201
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
S D+ +++FD++P ++ +W AMINGY + + AL LF+ M + +
Sbjct: 202 ISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEE-----ALELFKRMQAE--NIF 254
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P + TMV ++ +++G+L G +H Y K E V++GTAL+DMYSKCG + +A+
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCI--EIGVYLGTALIDMYSKCGSIKDAI 312
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M K++ TW +M T + +HG G EA+ L M VKP+A+TF + AC H
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
V+EG F M +G+ P +HY C+ +L R+ +L+EA+
Sbjct: 373 NVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 176/366 (48%), Gaps = 24/366 (6%)
Query: 48 LYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLT 103
L+ + + + + + D N+ +N++I R +++ F+ GL+
Sbjct: 1954 LFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIP 2013
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
++ + SC+ C L + GR H GF ++ V++ LI Y+ +
Sbjct: 2014 TRS-SFPCTIKSCSALCDLVS---GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDA 2069
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK-----PTDT 218
+ +FD++P+R+ +W +MI GY + A NAL+LF+D L + + V+ P D+
Sbjct: 2070 RALFDEIPLRNVVSWTSMITGYVQNEQ-----ADNALLLFKDFLEEETEVEDGNNVPLDS 2124
Query: 219 -TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
MV VLS S++ VHG++ K + + + +G L+D Y+KCG + +F
Sbjct: 2125 VVMVSVLSACSRVSGKGITEGVHGFVVKKGF--DGSIGVGNTLMDAYAKCGQPLVSKKVF 2182
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLV 336
M EK+ ++W +M A G EA+ + M R GV+ NAVT +++ AC HAG +
Sbjct: 2183 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
G + D + K +E ++ + I+D+ + G +E A + K + W ++++
Sbjct: 2243 RAGKCIHDQV-IKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK-NVKSWTAMVA 2300
Query: 397 ACNVHG 402
+HG
Sbjct: 2301 GYGMHG 2306
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 156/361 (43%), Gaps = 67/361 (18%)
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+F L +C F L RQIH + + G + L+ LIH Y+++ I+ +F Q
Sbjct: 31 LFLLQNCKNFKHL------RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQ 84
Query: 170 MPMRSSATWNAMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+ + TWN +I NG Q AL+L+++M+ G+ T V+
Sbjct: 85 IQNPCTFTWNLIIRANTINGLSEQ----------ALMLYKNMVC--QGIAADKFTFPFVI 132
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR--- 281
+ ++ G VHG + K Y DVF+ L+D Y KCG AL +F +MR
Sbjct: 133 KACTNFLSIDLGKVVHGSLIK--YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRN 190
Query: 282 ----------------------------EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
KNV++WTAM G + + EA+ L M+
Sbjct: 191 VVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQA 250
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
+ PN T SL AC G++ G + D K +E + + ++D+ + G ++
Sbjct: 251 ENIFPNEYTMVSLIKACTEMGILTLGRGIHD-YAIKNCIEIGVYLGTALIDMYSKCGSIK 309
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ-----PE-VTFVDVA 427
+A +P K W S++++ VHG LG++ + +++ P+ +TF+ V
Sbjct: 310 DAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSEMERVNVKPDAITFIGVL 365
Query: 428 C 428
C
Sbjct: 366 C 366
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/468 (34%), Positives = 247/468 (52%), Gaps = 37/468 (7%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLY--CTKKASPQSTKIVHFVFTHFDPPN 73
A+ +P+ + H+ + AL S P LI +Y C + A + VF +
Sbjct: 130 AVLSPA--RAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARK------VFDEIPRRD 181
Query: 74 LFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
L +N++I + +++V VF + D+ + V LG+C L L LGR
Sbjct: 182 LVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGE---LGDLELGR 238
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+ V +RG N + + LI YA D+ S +++FD M R TWNA+I+GY +Q+
Sbjct: 239 WVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGY-AQN 297
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
A + A+ LF M D V T+ VLS + +G L+ G + Y + +
Sbjct: 298 GMADE----AISLFHAMKEDC--VTENKITLTAVLSACATIGALDLGKQIDEYASQRGF- 350
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
++D+F+ TAL+DMY+KCG L +A +F M +KN +W AM + +A HGK EA+ L
Sbjct: 351 -QHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQ 409
Query: 310 SMRD--CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M D G +PN +TF L +AC HAGLV EG LFD M + +G+ P I+HYSC+VDLL
Sbjct: 410 CMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLA 469
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAGHL EA++ I +P KPD + +LL AC +V +GE+V +++L++ P
Sbjct: 470 RAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEVDPS------- 522
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
S +++ S IYA+ W D +R M+ K + PG S ++ H
Sbjct: 523 -NSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENH 569
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 225/402 (55%), Gaps = 22/402 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L +R D++ +F SKG+ + D ++ L +CA SL GR +H ++
Sbjct: 726 LIAAYVREGLYDDAIRLFYEMESKGV-SPDVYSMTSVLHACACGNSLDK---GRDVHNYI 781
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K + V+ L+ YA + VF Q+P++ +WN MI GY S +
Sbjct: 782 RKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNE-- 839
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL LF +M + +P TM C+L L LE G +HG + + Y E +
Sbjct: 840 ---ALKLFAEMQKES---RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSE--LH 891
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ AL+DMY KCG L +A L+F + EK+++TWT M +G +HG GNEAI MR G
Sbjct: 892 VANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAG 951
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KP+ +TFTS+ AC H+GL+ EG F++M S+ +EP ++HY+C+VDLL R G+L +A
Sbjct: 952 IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKA 1011
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
YN I +PIKPDA +W +LL C +H DV L EKV + + +L+P+ + +V
Sbjct: 1012 YNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPD--------NAGYYVL 1063
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477
L+NIYA AE+W +V+ +R+++ + ++ PG S ++ +T
Sbjct: 1064 LANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFT 1105
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 196/407 (48%), Gaps = 38/407 (9%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN-LFLFNTLI- 81
K +H+ + +N + L A+L+ +Y + A + +I F H N +FL+N ++
Sbjct: 471 KMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRI----FDHILSDNKVFLWNLMMS 526
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ ++S+ +F G+ T + +T+ L C F +L + ++IH V K
Sbjct: 527 EYAKIGDYRESIYLFKKMQKLGI-TGNSYTFSCIL-KC--FATLGRVGECKRIHGCVYKL 582
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF V +LI Y + ++ S K+FD++ R +WN+MI+G C N
Sbjct: 583 GFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG----------CVMN 632
Query: 199 -----ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL F ML+ GV T+V ++ + +G L G +HG K + E
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLA--TLVNSVAACANVGSLSLGRALHGQGVKACFSRE-- 688
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V L+DMYSKCG L++A+ F +M +K V++WT++ G ++AIRL M
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV P+ + TS+ AC +++G + + ++ K + + + ++D+ + G +E
Sbjct: 749 KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR-KNNMALCLPVSNALMDMYAKCGSME 807
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
EAY IP+K D + W +++ + +L + K+ ++Q E
Sbjct: 808 EAYLVFSQIPVK-DIVSWNTMIGG---YSKNSLPNEALKLFAEMQKE 850
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 121/276 (43%), Gaps = 16/276 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA-TWNAMIN 183
L G+ +H ++ G ++ L+ Y S + G+++FD + + WN M++
Sbjct: 467 LQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMS 526
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC--VHG 241
Y + ++ LF+ M G+ T C+L + LG + G C +HG
Sbjct: 527 EYAKIGDYRE-----SIYLFKKM--QKLGITGNSYTFSCILKCFATLGRV--GECKRIHG 577
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K + N V +L+ Y K G +D+A +F + +++V++W +M +G ++G
Sbjct: 578 CVYKLGFGSYNTVV--NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFS 635
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+ A+ M V + T + AAC + G + G L K + +
Sbjct: 636 HSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALH-GQGVKACFSREVMFNNT 694
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++D+ + G+L +A + K + W SL++A
Sbjct: 695 LLDMYSKCGNLNDAIQAFEKMGQKT-VVSWTSLIAA 729
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 260/477 (54%), Gaps = 36/477 (7%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
R + ++ T S IKQ+ + +T +S L ++L++ S + +F
Sbjct: 3 RVYMETMIQNCVTFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVK--IF 60
Query: 67 THFDPPNLFLFNTLIRC-TPPQDSVLVFAYW-------VSKGLLTFDDFTYVFALGSCAR 118
H P +N +IR L F+++ S L D T F L +CAR
Sbjct: 61 RHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKACAR 120
Query: 119 -FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
CS + + QIH +++RGF + L+ TTL+ Y+ N D+ S K+FD+M +R A+
Sbjct: 121 ALCSSAMV----QIHCQISRRGFSADALLCTTLLDAYSKNGDLISALKLFDEMSVRDVAS 176
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNA+I G + ++ A AL L++ M ++ G++ ++ T+V L S LG ++ G
Sbjct: 177 WNALIAGLVAGNR-----ASEALELYKRM--EMEGIRRSEVTVVAALGACSHLGDVKEGE 229
Query: 238 CV-HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGM 295
+ HGY++ +++V + A++DMYSKCG +D A +F + +K+V+TW M TG
Sbjct: 230 KILHGYIKDE--KLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITGF 287
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
++HG+ + A+ + + + G+KP+ V++ + AC H GLVE G+ +F+NM GVEP+
Sbjct: 288 SVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACN-GVEPN 346
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+KHY C+VDLL RAG L EA++ I + + PD +LW+SLL A +H +V + E + +
Sbjct: 347 MKHYGCVVDLLSRAGRLREAHDIICSMSMVPDPVLWQSLLGASEIHNNVEMAEIASRKIK 406
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ DFV LSN+YA+ RW DV VR M+ K+V+ PG S ++
Sbjct: 407 EMGVN--------NDGDFVLLSNVYAAQGRWKDVGLVRDDMESKQVKKVPGISYIEA 455
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 132/338 (39%), Positives = 208/338 (61%), Gaps = 17/338 (5%)
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
++ + +V + TLI Y ++++ +K+FD MP R +W +MI GY SQ+ +
Sbjct: 150 YIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGY-SQASQFS 208
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
D A+ LF++M+ + VKP T+ VLS + LG L+ G VH Y+ + + + D
Sbjct: 209 D----AVKLFQEMMA--AKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR--HGVQAD 260
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+++G +L+DMY KCG ++ AL +F RM++K+ ++WT++ +G+A++G N A+ L M
Sbjct: 261 IYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLR 320
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV+P TF + AC HAGLV +GL F++M+S G+ P +KHY C+VDLL R+G+++
Sbjct: 321 EGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNID 380
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
+AY FI +PI PD ++WR LLSAC +HG+V L E K LL+L P C S ++
Sbjct: 381 KAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDP--------CDSGNY 432
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSN YA +RW D +R+ M+ V+ GSS ++
Sbjct: 433 VLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIE 470
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 145/276 (52%), Gaps = 11/276 (3%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
+ IHVH K GF + V+ LIH YA + +K+FD M R +WN +I GY
Sbjct: 42 ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGY- 100
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
SQ K K+ L LF M + +K TMV ++ S LG EF + Y+++
Sbjct: 101 SQYNKYKE----VLRLFDAMT--AANIKADAVTMVKIILACSHLGDWEFADSMVKYIKEN 154
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
E DV++G L+DMY + G L A +F M +++V++WT+M TG + + ++A++
Sbjct: 155 NL--EIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 212
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M VKP+ VT S+ +AC H G ++ G + ++ + GV+ I + ++D+
Sbjct: 213 LFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIR-RHGVQADIYVGNSLIDMY 271
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G +E+A + K D++ W S++S V+G
Sbjct: 272 CKCGMVEKALEVFHRMKDK-DSVSWTSVISGLAVNG 306
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 89/175 (50%), Gaps = 4/175 (2%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
V+++++ + + +H + K + E+ +F+ AL+ MY+ CG L A +F M +
Sbjct: 30 VVALTTNINASTISSSIHVHALKLGF--ESYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 87
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+++++W + G + + K E +RL D+M +K +AVT + AC H G E +
Sbjct: 88 RDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSM 147
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+K +E + + ++D+ GR G+L A +P K D I W S+++
Sbjct: 148 VKYIKEN-NLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMP-KRDVISWTSMITG 200
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T L +CA L W +H ++ + G ++ V +LI Y +
Sbjct: 225 DKVTVASVLSACAHLGKLDVGW---AVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKAL 281
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VF +M + S +W ++I+G A +AL LF ML + GV+PT T V +L
Sbjct: 282 EVFHRMKDKDSVSWTSVISGLA-----VNGFANSALDLFSQMLRE--GVQPTHGTFVGIL 334
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EK 283
+ GL+ G ME + G +VD+ S+ G +D A +M
Sbjct: 335 LACAHAGLVNKGLEYFESMESVHGLVPAMKHYG-CVVDLLSRSGNIDKAYEFIKKMPIVP 393
Query: 284 NVLTWTAMATGMAIHGK 300
+V+ W + + +HG
Sbjct: 394 DVVVWRILLSACKLHGN 410
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 261/479 (54%), Gaps = 32/479 (6%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
+L + T IK H+ I + L YA + +L P K H+ + FD
Sbjct: 15 ILASQRCNTVKQIKSTHSLFIIHGLHRNT-YA-ISKLLTAFLHLPNLNKHFHYASSIFDS 72
Query: 72 ---PNLFLFNTLIR-CTPPQDSVLVFAYWVSKGLLTFDD-----FTYVFALGSCARFCSL 122
PN F+++T+IR C+ L Y++ +D T+ F + +C + C
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFF 132
Query: 123 STLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
S +G+QIH V K G F+ + V T ++ Y +K + +KVFD++P W+ +
Sbjct: 133 S---VGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVL 189
Query: 182 INGYCSQSKKAKDCAFNA--LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+NGY C + L +FR+MLV G++P + ++ L+ +Q+G L G +
Sbjct: 190 MNGYVR-------CGLGSEGLEVFREMLV--KGLEPDEFSVTTALTACAQVGALAQGKWI 240
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H +++K ++ E+DVF+GTALVDMY+KCGC++ A+ +F ++ +NV +W A+ G A +G
Sbjct: 241 HEFVKKKSWI-ESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYG 299
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+A+ L+ + R+ G+KP++V + AAC H G +EEG + +NM++++ + P +H
Sbjct: 300 YAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEH 359
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSCIVDL+ RAG L++A N I +P+KP A +W +LL+ C H +V LGE K LL L+
Sbjct: 360 YSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLE 419
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477
+V V LSNIY S +R P+ VR ++ + V PG S+L+ + T
Sbjct: 420 KG----NVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVT 474
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 251/489 (51%), Gaps = 53/489 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T + + +IHA L+ + L L L+ + + S ++ + VF+H PN+
Sbjct: 11 LHGHNTRTRLPEIHAHLLRHFLHGSNL---LLAHFISICGSLSNSDYANRVFSHIQNPNV 67
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+FN +I+C PP +S+ F+ S+G+ D++TY L SC+ SLS L G+
Sbjct: 68 LVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWA-DEYTYAPLLKSCS---SLSDLRFGKC 123
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC---- 186
+H + + GF + ++ Y S + +KVFD+M R+ WN MI G+C
Sbjct: 124 VHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGD 183
Query: 187 ------------------------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
S SK +D AL LF +M+ G P + T+V
Sbjct: 184 VERGLHLFKQMSERSIVSWNSMISSLSKCGRD--REALELFCEMIDQ--GFDPDEATVVT 239
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL +S+ LG+L+ G +H E + + ++ + +G ALVD Y K G L+ A IF +M+
Sbjct: 240 VLPISASLGVLDTGKWIHSTAESS-GLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQR 298
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLH 341
+NV++W + +G A++GKG I L D+M + G V PN TF + A C + G VE G
Sbjct: 299 RNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEE 358
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF M ++ +E +HY +VDL+ R+G + EA+ F+ +P+ +A +W SLLSAC H
Sbjct: 359 LFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSH 418
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GDV L E L++++P S ++V LSN+YA RW DVE VR MK R+
Sbjct: 419 GDVKLAEVAAMELVKIEP--------GNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRL 470
Query: 462 ETEPGSSIL 470
G S +
Sbjct: 471 RKSTGQSTI 479
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 242/446 (54%), Gaps = 23/446 (5%)
Query: 33 TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLV 92
T+ L+ + +LI LY + ++ + P F+ + ++++ +
Sbjct: 275 TSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEM 334
Query: 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIH 152
F + +GL+ + FT L +CA SL L LG QIH HV K G NV V+ L+
Sbjct: 335 FCR-MRRGLVLPNQFTLASLLQACA---SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMD 390
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
YA + + ++F + P + +WN +I GY K AL+LF+DML
Sbjct: 391 MYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEK-----ALILFKDMLE--CQ 443
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V+ T+ T VL + + LE G+ +H KT Y + + +G AL+DMY+KCG + +
Sbjct: 444 VQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIY--DKNTVVGNALIDMYAKCGNIKD 501
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A L+F +RE + ++W AM +G ++HG EA++ +SM + KP+ VTF + +AC +
Sbjct: 502 ARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSN 561
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
AGL++ G F +M ++ +EP +HY+C+V LLGR+GHL++A + IP +P ++WR
Sbjct: 562 AGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWR 621
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452
+LLSAC +H DV LG + +L+++PE V LSNIYA+A RW +V S+
Sbjct: 622 ALLSACVIHNDVELGRISAQRVLEIEPE--------DEATHVLLSNIYANARRWGNVASI 673
Query: 453 RKQMKVKRVETEPGSSIL--QTTTHY 476
R MK K + EPG S + Q HY
Sbjct: 674 RTSMKRKGIRKEPGLSWIENQGRVHY 699
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 182/418 (43%), Gaps = 43/418 (10%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
K +H ++I L+A L+ Y + P + K+ F N F TLI+
Sbjct: 64 KYLHCEIIKKG-NCLDLFANNILLNFYVKYDSLPDAAKL----FDEMPDRNTVSFVTLIQ 118
Query: 83 ----CTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
C +++ +F+ +G L F+ V L A + L G +H V K
Sbjct: 119 GYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKL-----GFSVHACVYK 173
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + V T LI Y+ ++VFD + + +W M+ Y +C
Sbjct: 174 LGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVEN-----ECFE 228
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+L LF M + G KP + T VL L + G VHG KT Y+ E +F+G
Sbjct: 229 ESLKLFSRM--RIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE--LFVG 284
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
L+D+Y K G +D+AL +F M + +V+ W+ M A + EAI + MR V
Sbjct: 285 VELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVL 344
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEE 374
PN T SL AC A LV+ L L + + K G++ ++ + ++D+ + G +E
Sbjct: 345 PNQFTLASLLQAC--ASLVD--LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK---VGKILLQLQ---PEVTFVDV 426
+ P D + W +++ G+ GEK + K +L+ Q EVT+ V
Sbjct: 401 SLQLFSESPNCTD-VSWNTVIVGYVQAGN---GEKALILFKDMLECQVQGTEVTYSSV 454
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 154/331 (46%), Gaps = 29/331 (8%)
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
PN NT + C Q S L A S F+ + Y L SC R +T G+ +
Sbjct: 13 PNHCKSNTAL-CIITQRSFL--AQRTSHSSPEFNTYIYGSLLQSCIRNGDCAT---GKYL 66
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H + K+G ++ L++FY + K+FD+MP R++ ++ +I GY SQ +
Sbjct: 67 HCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGY-SQCLR 125
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
+ A+ LF + + + P + V L VS++ L F VH + K + +
Sbjct: 126 FSE----AIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFS--VHACVYKLGF--D 177
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+D F+GTAL+D YS CG + A +F + K++++WT M + E+++L M
Sbjct: 178 SDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRM 237
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS------CIVDL 365
R G KPN TF S+ AC GL +F+ K+ G + ++DL
Sbjct: 238 RIVGFKPNNFTFASVLKACV-------GLEVFNVGKAVHGCAFKTSYLEELFVGVELIDL 290
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
++G +++A +P K D I W +++
Sbjct: 291 YIKSGDVDDALQVFEEMP-KDDVIPWSFMIA 320
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 252/468 (53%), Gaps = 32/468 (6%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L T + + QIHA ++ + L Q++ + + + + VF
Sbjct: 13 LRHLHGRKTRTQLPQIHAHILRHHLHQS---NQILSHFISVCGALDKMGYANLVFHQTQN 69
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PNL LFN++I+ C P ++S+L+F+ ++G+ D+FT+ L SC+ C +
Sbjct: 70 PNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWP-DEFTFAPLLKSCSGICDNR---I 125
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-----PMRSSATWNAMI 182
G+ +H V GF + +I Y S + KKVFD+M RS +WN+MI
Sbjct: 126 GKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMI 185
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G + + AL LFR+M G +P D T+V +L V ++LG ++ G +H Y
Sbjct: 186 AGLEQSGRDGE-----ALELFREMWD--HGFEPDDATVVTILPVCARLGAVDVGEWIHSY 238
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
E + + + + +G +LVD Y KCG L+ A +F+ M +KNV++W AM +G+ +GKG
Sbjct: 239 AESSRLL-RDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGE 297
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
L + M + GV+PN TF + + C HAGLVE G +LF +M +EP ++H+ C+
Sbjct: 298 LGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCM 357
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLL R G +EEA + + +P++P+A+LW SLLSA GDV E K L++L+P
Sbjct: 358 VDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHAECAVKELIELEP--- 414
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
S ++V LSN+YA +W +VE VR MK K + PG S++
Sbjct: 415 -----WNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 457
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 209/352 (59%), Gaps = 18/352 (5%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP + WN++
Sbjct: 1 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
ING+ K + AL L+ +M + G+KP T+V +LS +++G L G VH
Sbjct: 61 INGFAENGKPEE-----ALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 113
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
YM K ++ L+D+Y++CG ++ A +F M +KN ++WT++ G+A++G G
Sbjct: 114 YMIKVGLT--RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 171
Query: 302 NEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EAI L M G+ P +TF + AC H G+V+EG F M+ ++ +EP I+H+
Sbjct: 172 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 231
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLL RAG +++AY +I +P++P+ ++WR+LL AC VHGD L E +LQL+P
Sbjct: 232 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 291
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
S D+V LSN+YAS +RW DV+ +RKQM V+ PG S+++
Sbjct: 292 --------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 335
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 130/287 (45%), Gaps = 27/287 (9%)
Query: 27 IHAQLITNALKSPPLYAQ--LIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
IH+ +I + S +Y Q L+ LY C AS + VF +L +N++I
Sbjct: 10 IHSVVIRSGFGSL-IYVQNSLLHLYANCGDVAS------AYKVFDKMPEKDLVAWNSVIN 62
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
P++++ ++ SKG+ D FT V L +CA+ +L+ LG+++HV++ K
Sbjct: 63 GFAENGKPEEALALYTEMNSKGIKP-DGFTIVSLLSACAKIGALT---LGKRVHVYMIKV 118
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G N+ + L+ YA + K +FD+M ++S +W ++I G
Sbjct: 119 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA-----VNGFGKE 173
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ LF+ M G+ P + T V +L S G+++ G M + + + G
Sbjct: 174 AIELFKYM-ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG- 231
Query: 259 ALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEA 304
+VD+ ++ G + A M + NV+ W + +HG + A
Sbjct: 232 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 212/395 (53%), Gaps = 51/395 (12%)
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
F S + C + G+ +H K GF ++ V T L+ YA D+ S +++FD M
Sbjct: 76 FTFSSILKLCPIEP---GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132
Query: 171 PMRS-------------------------------SATWNAMINGYCSQSKKAKDCAFNA 199
P +S WN MI+GY + A
Sbjct: 133 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE-----A 187
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
LVLFR ML + KP + T++ VLS QLG LE G VH Y+E + +V +GTA
Sbjct: 188 LVLFRRMLK--AKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI--QFNVHVGTA 243
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMYSKCG L++A L+F ++ +K+V+ W +M G A+ G EA++L SM G+ P
Sbjct: 244 LVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPT 303
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+TF + +AC H+G V EG +F+ MK ++G+EP I+HY C+V+LLGRAGH+E+AY +
Sbjct: 304 NITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELV 363
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ I+PD +LW +LL AC +HG +ALGEK+ ++L+ S ++ LSNI
Sbjct: 364 KNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQN--------LANSGTYILLSNI 415
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
YA+ W V +R MK V+ EPG S ++
Sbjct: 416 YAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNN 450
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y+ G LD ++ +F R + +V WTA+ G A+ G +A+ M GV+PNA TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+S+ C +E G L + K G + + + ++D+ R G + A +P
Sbjct: 79 SSILKLCP----IEPGKALH-SQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133
Query: 384 IKPDAILWRSLLSACNVHGDV 404
K L ++L+ HG++
Sbjct: 134 EKSLVSL-TAMLTCYAKHGEL 153
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/500 (32%), Positives = 242/500 (48%), Gaps = 57/500 (11%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+H+KQ+ A LIT YA + +CT S S F+F H + PN++L+ +I
Sbjct: 69 NHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLS--YARFIFDHVESPNVYLYTAMI 126
Query: 82 RCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
++L++ V + + F Y L SC + + R +H V +
Sbjct: 127 TAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGS---ARMVHCQVLR 183
Query: 138 RGFMFNVLVATTLIHFYASN-KDISSGKKVFDQMPMRSSATWNAMINGYCS--------- 187
GF +V T L+ Y D+ S + +FD+M R+ +W AMI+GY
Sbjct: 184 SGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVL 243
Query: 188 --QSKKAKDC-AFNALV--------------LFRDMLVDVSGV-----KPTDTTMVCVLS 225
+ +D ++NAL+ LFR M+ +G +P T VC LS
Sbjct: 244 LFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLS 303
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
G+L G +HGY+ + D F+ ALVDMY KCGCL A +F R E+++
Sbjct: 304 ACGHTGMLRLGKWIHGYVYRNGLGL--DSFVSNALVDMYGKCGCLKEARRVFDRTLERSL 361
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+W +M +A+HG+ AI + + M C GVKP+ VTF L AC H GLVE+G F
Sbjct: 362 TSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYF 421
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ M +G+EP I+HY C+VDLLGRAG EEA + G+ I+PD ++W SLL+ C +HG
Sbjct: 422 ELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGH 481
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
L E K L+ + P + L+NIY +W +V VRK +K +
Sbjct: 482 TDLAEFSIKKLIDMDPN--------NGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHK 533
Query: 464 EPGSSIL----QTTTHYTLD 479
PG S + Q Y++D
Sbjct: 534 TPGCSWIEIDNQVHQFYSVD 553
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 251/468 (53%), Gaps = 27/468 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQL-YCTKKASPQSTKIVHFVFTHFDPPN 73
LK KQ+HA+ I +L ++ L C S +F D P
Sbjct: 37 LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
F FNT+IR ++++ + + +G D+FTY L +C R L ++ G+
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEP-DNFTYPCLLKACTR---LKSIREGK 152
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
QIH V K G +V V +LI+ Y ++ VF+++ +++A+W++M++
Sbjct: 153 QIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG 212
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
++ L+LFR M + + +K ++ MV L + G L G +HG++ + +
Sbjct: 213 MWSE-----CLLLFRGMCSE-TNLKAEESGMVSALLACANTGALNLGMSIHGFLLRN--I 264
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E ++ + T+LVDMY KCGCLD AL IF +M ++N LT++AM +G+A+HG+G A+R+
Sbjct: 265 SELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFS 324
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M G++P+ V + S+ AC H+GLV+EG +F M + VEP +HY C+VDLLGRA
Sbjct: 325 KMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRA 384
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G LEEA I IPI+ + ++WR+ LS C V ++ LG+ + LL+L
Sbjct: 385 GLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSH--------N 436
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D++ +SN+Y+ + W DV R ++ +K ++ PG SI L+ TH
Sbjct: 437 PGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTH 484
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 165/536 (30%), Positives = 263/536 (49%), Gaps = 84/536 (15%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
LP L K+IT+ ++ Q+HA L+ + Y L C +
Sbjct: 29 LPQKTVLKLFDSKSITSLQYLTQLHA-LVLRSGHFQDHYVSGALLKCYANPHFSNFDFAL 87
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
VF+ PN+F++N +I+ + + Y+ G + D F + + CS++
Sbjct: 88 KVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFY--GRMVIDARPNKFTYPTLFKACSVA 145
Query: 124 -TLWLGRQIH-----------VHVTKRGF--------------MF-----NVLVATTLIH 152
+ GRQIH VH+ G MF +V+ T+I
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMID 205
Query: 153 FY-------------------------------ASNKDISSGKKVFDQMPMRSSATWNAM 181
Y A ++ +K+FD+M R +W++M
Sbjct: 206 GYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSM 265
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
++GY S + + AL +F+ M + + +P + VL+ S +G ++ G VH
Sbjct: 266 VDGYISAGRYKE-----ALEIFQQMQREET--RPGRFILSSVLAACSNIGAIDQGRWVHA 318
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y+++ + D +GTAL+DMY+KCG LD +F M+E+ + TW AM G+AIHG+
Sbjct: 319 YLKRNSI--KLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRA 376
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+A+ L +++ +KPN +T + AC HAG V++GL +F M+ +GV+P ++HY C
Sbjct: 377 EDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGC 436
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDLLGR+G EA + I +P+KP+A +W +LL AC +HG+ L E+VGKILL+L+P+
Sbjct: 437 MVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQ- 495
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
S +V LSNIYA R+ DV +RK MK + ++T PG SI L T H
Sbjct: 496 -------NSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVH 544
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 251/468 (53%), Gaps = 27/468 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQL-YCTKKASPQSTKIVHFVFTHFDPPN 73
LK KQ+HA+ I +L ++ L C S +F D P
Sbjct: 37 LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
F FNT+IR ++++ + + +G D+FTY L +C R L ++ G+
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEP-DNFTYPCLLKACTR---LKSIREGK 152
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
QIH V K G +V V +LI+ Y ++ VF+++ +++A+W++M++
Sbjct: 153 QIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG 212
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
++ L+LFR M + + +K ++ MV L + G L G +HG++ + +
Sbjct: 213 MWSE-----CLLLFRGMCSE-TNLKAEESGMVSALLACANTGALNLGMSIHGFLLRN--I 264
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E ++ + T+LVDMY KCGCLD AL IF +M ++N LT++AM +G+A+HG+G A+R+
Sbjct: 265 SELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFS 324
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M G++P+ V + S+ AC H+GLV+EG +F M + VEP +HY C+VDLLGRA
Sbjct: 325 KMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRA 384
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G LEEA I IPI+ + ++WR+ LS C V ++ LG+ + LL+L
Sbjct: 385 GLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSH--------N 436
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D++ +SN+Y+ + W DV R ++ +K ++ PG SI L+ TH
Sbjct: 437 PGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTH 484
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 215/366 (58%), Gaps = 22/366 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T V L +C+ C+ +GR + V + N ++ T LI Y+ D+ ++F
Sbjct: 230 TMVCLLSACSTLCNYE---VGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIF 286
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D + ++ +WNA+I G C Q ++ A+ L+R M VKP + T+V VLS
Sbjct: 287 DGVSCKNLPSWNAIITG-CVQGGLLEE----AIDLYRHM--KAQSVKPNEITLVNVLSAC 339
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG LE G VH Y+ + + +V + TALVDMY+KCG +D+A LIF + EK+V
Sbjct: 340 AGLGALELGREVHLYLGRNGL--DLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVAL 397
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W AM G+A HG G +++ + M GV+PN VTF + +AC H+GLVEEG F +M
Sbjct: 398 WNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMA 457
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
K G+ P ++HY+C+VDLLGRAGHL+EAY + + I PD+I+W +LLSAC +H ++ L
Sbjct: 458 DKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELA 517
Query: 408 EKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
+K+ + ++ Q P + F + LSNIYAS+ RW DV VR+Q+K KR++ G
Sbjct: 518 DKISETIMASQDPNIGFC---------ILLSNIYASSGRWKDVARVRRQVKEKRIKKPSG 568
Query: 467 SSILQT 472
S ++
Sbjct: 569 CSWVEV 574
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/470 (29%), Positives = 221/470 (47%), Gaps = 61/470 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ T+ + I QIHAQ + + L PL LI K S FV P
Sbjct: 6 LRTATSLTQIHQIHAQTLIHGL---PLQTHLI----PKLIDLHSIDYARFVLDQTPSPTD 58
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +N+LIR PQ+S+ ++ + + +FT+ F L +C+ +L ++ G Q
Sbjct: 59 FSWNSLIRAYTVHGSPQNSLFLYLKML-RSSTKPSNFTFPFVLKACS---TLGSVLEGEQ 114
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQ 188
IH HV + GF ++ V +LI Y + S + +D M R +WN++I+GY Q
Sbjct: 115 IHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQ 174
Query: 189 SKKAKD-----------CAFNALV--------------LFRDMLVDVSGVKPTDTTMVCV 223
+KA+D + A++ LFR MLV V+P TMVC+
Sbjct: 175 VEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCL 234
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS S L E G + +++ +P N + + TAL+DMYSKCG ++ A IF + K
Sbjct: 235 LSACSTLCNYEVGRFLSVFIDVN-KIPLNTILV-TALIDMYSKCGDVEKAWRIFDGVSCK 292
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LH 341
N+ +W A+ TG G EAI L M+ VKPN +T ++ +AC G +E G +H
Sbjct: 293 NLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVH 352
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
L+ + G++ ++ + +VD+ + G +++A I + D LW +++ H
Sbjct: 353 LY---LGRNGLDLNVILATALVDMYAKCGKIDDAC-LIFVKTSEKDVALWNAMILGLAYH 408
Query: 402 GDVALGEKVGKILLQL-----QP-EVTFVDV--ACTSEDFVALSNIYASA 443
GD G + Q+ QP +VTF+ V AC V + S+
Sbjct: 409 GD---GRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSS 455
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/491 (32%), Positives = 252/491 (51%), Gaps = 63/491 (12%)
Query: 23 HIKQ---IHAQLITNALKSPPLYAQLIQLYCTK-KASPQSTKIVHFVFTHFDPPNLFLFN 78
HI Q IHAQLI N P + C+K A +++I F +TH PN++L+
Sbjct: 61 HINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRI--FQYTH--NPNVYLYT 116
Query: 79 TLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
LI +++ +++ + + +L D++ L +C S L GR++H
Sbjct: 117 ALIDGFVSSGNYLEAIQLYSRMLHESILP-DNYLMASILKACG---SQLALREGREVHSR 172
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP----------------------- 171
K GF N LV ++ Y ++ ++VF++MP
Sbjct: 173 ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAG 232
Query: 172 -------MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+ + W AMI+G+ + + AL FR M + V+P + T+VCVL
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGFVRNEETNR-----ALEAFRGMQGE--NVRPNEFTIVCVL 285
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S SQLG LE G VH YM K + E ++F+G AL++MYS+CG +D A +F M++++
Sbjct: 286 SACSQLGALEIGRWVHSYMRK--FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRD 343
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+T+ M +G++++GK +AI L M ++P VTF + AC H GLV+ G +F
Sbjct: 344 VITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFH 403
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + VEP I+HY C+VDLLGR G LEEAY+ I + + PD I+ +LLSAC +H ++
Sbjct: 404 SMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNL 463
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE+V K L S +V LS++YAS+ +W + VR +MK ++ E
Sbjct: 464 ELGEQVAKELEDRG--------QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKE 515
Query: 465 PGSSILQTTTH 475
PG S ++
Sbjct: 516 PGCSSIEVNNE 526
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/512 (31%), Positives = 258/512 (50%), Gaps = 66/512 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNAL------KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
++ T + + Q+HAQ T L SP + +++ T S ++H+ +
Sbjct: 34 IRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSSFSLLHYAVST 93
Query: 69 FDP---PNLFLFNTLIRCTPPQDSVLV---FAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
FD P+ F +N +IR S L F + + + D +Y FAL +CA L
Sbjct: 94 FDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKACAH---L 150
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA---------------SNKDISS----- 162
L L + +H V K GF+ ++ V +LIH Y+ S++D+ S
Sbjct: 151 RVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSYNALV 210
Query: 163 -----------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
+++FD MPMR S +W ++I GY A+ N + D+++ +
Sbjct: 211 DGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGY------AQGSYCNEAIGLFDLMMGLK 264
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
++P + +V LS +QLG LE G +H Y++K + D F+ T LVD Y+K GC+D
Sbjct: 265 -LEPDNIALVSALSACAQLGELEKGKQIHDYIKKN--RIQADSFLSTGLVDFYAKSGCID 321
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A+ +F +K+++TW AM G+A+HG + + M + G+KP+ ++F + C
Sbjct: 322 TAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGCS 381
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
H GLV+E LFD M+S +GV +KHY C+ DLL RAG ++EA G+P+ D +W
Sbjct: 382 HGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFVW 441
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
LL C +HG++ + E+ K +++L+PE V + L+N+YA+A+RW DV
Sbjct: 442 SGLLGGCRIHGNIEIAEQAAKQVMELKPEDGGV--------YSILANVYANADRWEDVVK 493
Query: 452 VRKQMKVKR-VETEPGSSILQ--TTTHYTLDG 480
+R+ M R V+ G S +Q TH L G
Sbjct: 494 IRRSMSSNRAVKKNAGRSSIQLGGLTHEFLAG 525
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 241/463 (52%), Gaps = 57/463 (12%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFLFNTL 80
IKQ+HA + TN++ LY L + K++ +V+ H LF+ +
Sbjct: 1097 QIKQLHALITTNSV----LYNNLTV----------ANKLL-YVYVHHKCLTDAYALFDEM 1141
Query: 81 IRCTPPQDSVLV---------------FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
+ P S+++ F + G+ D++T F + +C +L
Sbjct: 1142 PQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQP-DNYTLPFVIKACRDTVALD-- 1198
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+GR IH V K G + V L+ YA K I K +FD MP + TW MI GY
Sbjct: 1199 -MGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGY 1257
Query: 186 --CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
C +K++ LVLF D L + G P MV +++ ++LG + VH Y+
Sbjct: 1258 AECGNAKES-------LVLF-DHLRE-EGFVPDKIAMVSIVNACAKLGAMNKARFVHEYV 1308
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ + DV +GTA++DMY+KCG +D+A IF M KNV++W+AM HG+G +
Sbjct: 1309 NRNRFSL--DVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKK 1366
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A+ L M G+ PN +TF SL AC HAGLVE+GL L M +GV P IKH++C+V
Sbjct: 1367 ALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMV 1426
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLLGRAG L EA+ FI + ++ D LW SLL AC +H + L EK K LL+LQP+
Sbjct: 1427 DLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQ--- 1483
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
+++ LSNIYA+A +W DV +R M ++++ PG
Sbjct: 1484 -----NPGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPG 1521
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 154/313 (49%), Gaps = 29/313 (9%)
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL-VATTLIHFYASNKDISSGKKVFD 168
+ L +C C + +Q+H +T ++N L VA L++ Y +K ++ +FD
Sbjct: 1086 ISTLLNCKNICQI------KQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFD 1139
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+MP ++ +W+ MI G+ + F++++ + GV+P + T+ V+
Sbjct: 1140 EMPQKNPVSWSIMIGGFVKVGE-----FMQCYKTFKELIRN--GVQPDNYTLPFVIKACR 1192
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L+ G +H + K Y D F+ ALVDMY+KC +++A L+F M K+++TW
Sbjct: 1193 DTVALDMGRLIHCVVLK--YGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTW 1250
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNM 346
T M G A G E++ L D +R+ G P+ + S+ AC G + + +H + N
Sbjct: 1251 TVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVN- 1309
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
++++ ++ + + ++D+ + G ++ A + K + I W ++++A HG
Sbjct: 1310 RNRFSLDVILG--TAMIDMYAKCGDVDSAREIFDNMHHK-NVISWSAMIAAYGYHGQ--- 1363
Query: 407 GEKVGKILLQLQP 419
GK L+L P
Sbjct: 1364 ----GKKALELFP 1372
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 250/472 (52%), Gaps = 35/472 (7%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFT 67
LL L + T S +KQ+HAQ I P LY++++ +S + VF
Sbjct: 30 LLFLNSCTCMSQLKQLHAQTIRTTSSHHPNTFFLYSRILHF-----SSLHDLRYAFRVFH 84
Query: 68 HFDPPNLFLFNTLIRCTP-----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+ PN F++N LIR Q ++ ++ + +G + D T+ F L +CA +L
Sbjct: 85 QIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFAL 144
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S G QIH + K GF BV + +L+HFYA+ + K VFD+M RS +WN +I
Sbjct: 145 SE---GEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVI 201
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+ + + D A N LF +M +P T+ + + + +G L G H +
Sbjct: 202 DAFVRFGEF--DAALN---LFGEMQ---KFFEPDGYTIQSIANACAGMGSLSLGMWAHVF 253
Query: 243 MEKTFYMPE-NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K NDV + T+LVDMY KCG L+ AL +F RM +++V +W +M G + HG+
Sbjct: 254 LLKKXDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEV 313
Query: 302 NEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
A+ M R + PNA+TF + +AC H GLV EG FD M +++ ++P ++HY
Sbjct: 314 AAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYG 373
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA-CNVHGDVALGEKVGKILLQLQP 419
C+VDLL RAG ++EA + + +P++PD ++WRSLL A C + V L E++ +L+ +
Sbjct: 374 CLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMASRVLEAEG 433
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V S +V LS +YASA RW DV VRK M K V EPG S ++
Sbjct: 434 GV-------CSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIE 478
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 247/483 (51%), Gaps = 52/483 (10%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+KQ H +I L L C+ + + VFTH PN +L NT+IR
Sbjct: 31 LKQSHCYMIITGLNRDNLNVAKFIEACSNAGH---LRYAYSVFTHQPCPNTYLHNTMIRA 87
Query: 84 -----TPPQDSVLVFAYWVSKGLLTF-DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
P S+ + Y L D FT+ F L R +S +W GRQIH V
Sbjct: 88 LSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVR---VSDVWFGRQIHGQVVV 144
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY------------ 185
GF +V V T LI Y S + +K+FD+M ++ WNA++ GY
Sbjct: 145 FGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSL 204
Query: 186 ---------------CSQSKKAKDC-AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
C S AK A A+ +F+ ML++ V+P + T++ VLS +
Sbjct: 205 LEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME--NVEPDEVTLLAVLSACAD 262
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG LE G + Y++ V + A++DMY+K G + AL +F + E+NV+TWT
Sbjct: 263 LGSLELGERICSYVDHRGM--NRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWT 320
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+ G+A HG G EA+ + + M GV+PN VTF ++ +AC H G V+ G LF++M+SK
Sbjct: 321 TIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSK 380
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+ P+I+HY C++DLLGRAG L EA I +P K +A +W SLL+A NVH D+ LGE+
Sbjct: 381 YGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGER 440
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
L++L+P S +++ L+N+Y++ RW + +R MK V+ G S
Sbjct: 441 ALSELIKLEPN--------NSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESS 492
Query: 470 LQT 472
++
Sbjct: 493 IEV 495
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/465 (34%), Positives = 244/465 (52%), Gaps = 55/465 (11%)
Query: 15 LKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ A T + QIHAQ+ + N + + QLI C+ K+ + I F FD PN
Sbjct: 47 IHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSI----FRCFDHPN 102
Query: 74 LFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF------DDFTYVFALGSCARFCSLSTLWL 127
LF+FN LIR F VS +L D T F L S A +L + L
Sbjct: 103 LFVFNALIRGLAENSR---FEGSVSHFVLMLRLSIRPDRLTLPFVLKSVA---ALVDVGL 156
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR +H V K G F+ V +L+ Y ++ G ++FD+ P R+ A
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA----------- 205
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+++L+ +GV+P D T+V L +++G L+ G +H Y+
Sbjct: 206 ----------ESILLW-------NGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNG 248
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ IGTALVDMY+KCG + +A +F + K++LTW+ M G AIHG ++A++
Sbjct: 249 FQLNRG--IGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQC 306
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M+ G+ P+ V F ++ AC H+G V++GL+ F++M+ + +EP +KHY+ IVDLLG
Sbjct: 307 FVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLG 366
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+EA +FI +PI PD ++W +L AC H ++ + E + LLQL+P+
Sbjct: 367 RAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPK------- 419
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V LSN+YA+ RW DVE VR MK + VE +PG S ++
Sbjct: 420 -HPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEV 463
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/403 (34%), Positives = 235/403 (58%), Gaps = 31/403 (7%)
Query: 76 LFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
++NT+IR P+++++++ ++KG+ ++FT+ F L SCAR LS+L G ++
Sbjct: 1 MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR---LSSLEPGHEV 57
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H H+ K GF ++ V LIH Y+ +++ + +FD+ +R ++N MI GY ++
Sbjct: 58 HSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQP 117
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV-HGYMEKTFYMP 250
+AL LF +M + T+V VLS ++LG + G + H Y+E +
Sbjct: 118 E-----SALCLFGEM------QNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVF-- 164
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLL 308
+ + A++DMY+KCG +D+AL IF R+ + K + +M G+A HG G AI +
Sbjct: 165 NQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVF 224
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
+ G+KP+ VTF + AC H+GL+EEG LF++M + +G++P ++HY C+VDLLGR
Sbjct: 225 RELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGR 284
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
G LEEAY+ + +P + ++++WR+LLSAC HG+V +GE G+ LL+++ +
Sbjct: 285 YGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQ-------- 336
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V LSNI A A +W + VRK M+ + PG S ++
Sbjct: 337 HGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIE 379
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/481 (35%), Positives = 255/481 (53%), Gaps = 44/481 (9%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITN---ALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
H+ L L T S +KQIHAQ I N S LY++++ + + ++
Sbjct: 24 HQSRFLHLLTDCTDLSKLKQIHAQAIRNFSTHNSSLFLYSRILHV----------SSLID 73
Query: 64 F-----VFTHFDPPNLFLFNTLI-RCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFAL 113
F VF D PN F++NTLI C D ++ +F + +G + D T+ F L
Sbjct: 74 FDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPDKHTFPFLL 133
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA +LS GRQ H + K G +V V +LIH YAS +S KVF++MP+R
Sbjct: 134 KACAYVFALSE---GRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFEKMPLR 190
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
S +WN MI+ Y QS + NAL LF +M + +P TM ++S + +G L
Sbjct: 191 SLVSWNVMIDAYV-QSGLFE----NALKLFVEM---QNSFEPDGYTMQSIVSACAGIGAL 242
Query: 234 EFGACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
G H Y + K DV I ++LVDMYSKCG L A +F M + ++ +W +M
Sbjct: 243 SLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMI 302
Query: 293 TGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+A+HG+G A++ + + PN+VTF + +AC H G+V +G FD M + +
Sbjct: 303 LALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYK 362
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC-NVHGDVALGEKV 410
+EP ++HY C+VDLL R+G ++EA + + IKPDA++WRSLL AC + V L E+V
Sbjct: 363 IEPRLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEV 422
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+LQ + + +S +V LS +YASA +W DV +RK M V EPG S +
Sbjct: 423 AFKILQSEKTI-------SSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSI 475
Query: 471 Q 471
+
Sbjct: 476 E 476
>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/469 (33%), Positives = 249/469 (53%), Gaps = 40/469 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP-PN 73
L+ + +++IH+ +I N L+ P + +C + S +F HFD P+
Sbjct: 12 LQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTG-SLSHAQLLFDHFDSDPS 70
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+N LIR + P +S+L + + + D FT+ FAL SC R S+
Sbjct: 71 TSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL--- 127
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH V + GF+ + +VAT+L+ Y++N + KVFD+MP+R +WN MI
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMI------- 180
Query: 190 KKAKDCAFN-------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
C F+ AL +++ M GV T+V +LS + + L G +H
Sbjct: 181 -----CCFSHVGLHNQALSMYKRM--GNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRI 233
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
E+ VF+ AL+DMY+KCG L+NA+ +F+ MR+++VLTW +M G +HG G
Sbjct: 234 ACDI--RCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGV 291
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EAI M GV+PNA+TF L C H GLV+EG+ F+ M S++ + P++KHY C+
Sbjct: 292 EAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCM 351
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDL GRAG LE + I D +LWR+LL +C +H ++ LGE K L+QL+
Sbjct: 352 VDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE---- 407
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A + D+V +++IY++A S+RK ++ ++T PG S ++
Sbjct: 408 ----AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIE 452
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/414 (35%), Positives = 235/414 (56%), Gaps = 25/414 (6%)
Query: 62 VHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
V VF D + +N L+ + + P+ ++ ++ GL D FT L +C+
Sbjct: 263 VKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGL-DPDWFTIGSLLLACS 321
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R + +L G +IH + G + + +L+ Y + + +FD M RS +
Sbjct: 322 R---MKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS 378
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN MI GY SQ+ + A+ LFR ML D G++P + ++CV SQL L G
Sbjct: 379 WNVMIAGY-SQNGLPDE----AINLFRQMLSD--GIQPYEIAIMCVCGACSQLSALRLGK 431
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+H + K ++ E D+F+ ++++DMY+K GC+ + IF R+REK+V +W + G I
Sbjct: 432 ELHCFALKA-HLTE-DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGI 489
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG+G EA+ L + M G+KP+ TFT + AC HAGLVE+GL F+ M + +EP ++
Sbjct: 490 HGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLE 549
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY+C+VD+LGRAG +++A I +P PD+ +W SLLS+C +HG++ LGEKV LL+L
Sbjct: 550 HYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLEL 609
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+PE E++V +SN++A + +W DV VR +MK ++ + G S ++
Sbjct: 610 EPE--------KPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIE 655
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%)
Query: 127 LGRQIHVHVTKR-GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+GR++H V+ F + ++ T +I Y+ S + VFD++ ++ WNA+++ Y
Sbjct: 123 VGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 182
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+ +A+ +F + L+ V+ KP + T+ CV+ + L L G +HG K
Sbjct: 183 TRN-----ELFEDAMSIFSE-LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATK 236
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNAL-LIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ +DVF+G AL+ MY KCG ++ A+ +F M K V +W A+ G A + +A
Sbjct: 237 MDLV--SDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKA 294
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHI 356
+ L M D G+ P+ T SL AC + G +H F +++ V+P I
Sbjct: 295 LDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGF-ALRNGLAVDPFI 347
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
ND + T ++ MYS CG ++ ++F ++R KN+ W A+ + + +A+ + +
Sbjct: 139 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 198
Query: 312 RDCGV-KPNAVTFTSLFAACCHAGLVEEGL-HLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
KP+ T + AC AGL++ GL + M +K + + + ++ + G+
Sbjct: 199 ISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKC 256
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLL 395
G +EEA + + W +LL
Sbjct: 257 GLVEEAVKRVFDLMDTKTVSSWNALL 282
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/432 (36%), Positives = 235/432 (54%), Gaps = 58/432 (13%)
Query: 77 FNTLI----RCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+NTLI R P++++ +F V G + D+ T + A+ CA+ + L LG+++
Sbjct: 190 WNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQ---MGDLELGKRL 246
Query: 132 HVHVTKRGFMFNVLVATTLIHFYA---------------SNKDISS-------------- 162
H V +G V + ++ Y NK + S
Sbjct: 247 HEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMM 306
Query: 163 --GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ +FD+MP R WNA++ GY Q+K+ K+ A+ LF +M S V P + TM
Sbjct: 307 EDARMLFDEMPERDVFPWNALMAGYV-QNKQGKE----AIALFHEM--QESKVDPNEITM 359
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEK-TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
V +LS SQLG LE G VH Y+++ Y+ V +GT+LVDMY+KCG + A+ IF
Sbjct: 360 VNLLSACSQLGALEMGMWVHHYIDRHQLYL---SVALGTSLVDMYAKCGNIKKAICIFKE 416
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ +KN LTWTAM G+A HG +EAI M D G++P+ +TF + +ACCHAGLV+EG
Sbjct: 417 IPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEG 476
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F M K+ +E +KHYSC++DLLGRAGHL+EA + +P+ PDA++W +L AC
Sbjct: 477 RQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACR 536
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+HG++ LGEK L++L P + + +V L+N+YA A + VR M+
Sbjct: 537 MHGNITLGEKAAMKLVELDPSDSGI--------YVLLANMYAEANMRKKADKVRVMMRHL 588
Query: 460 RVETEPGSSILQ 471
VE PG S ++
Sbjct: 589 GVEKVPGCSCIE 600
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 168/369 (45%), Gaps = 54/369 (14%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T+ F L +CAR L G + HV K GF +V V +HF++ + + +
Sbjct: 120 DHLTFPFLLKACAR---LQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLAR 176
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++FD+ P R +WN +I GY + AL LF ++ D V+P + TM+ +
Sbjct: 177 RLFDESPARDVVSWNTLIGGYVRSGLPRE-----ALELFWRLVEDGKAVRPDEVTMIGAV 231
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +Q+G LE G +H +++ V + A++DMY KCG L+ A +F R+ K
Sbjct: 232 SGCAQMGDLELGKRLHEFVDSKGV--RCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKT 289
Query: 285 VLTWTAMATGMAIHG-------------------------------KGNEAIRLLDSMRD 313
V++WT M G A G +G EAI L M++
Sbjct: 290 VVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQE 349
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGL---HLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
V PN +T +L +AC G +E G+ H D + V + +VD+ + G
Sbjct: 350 SKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG----TSLVDMYAKCG 405
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQP-EVTFVDV- 426
++++A IP K +A+ W +++ HG D A+ I L LQP E+TF+ V
Sbjct: 406 NIKKAICIFKEIPDK-NALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 427 -ACTSEDFV 434
AC V
Sbjct: 465 SACCHAGLV 473
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 164/541 (30%), Positives = 270/541 (49%), Gaps = 95/541 (17%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIH----AQLITNALKSPPLYAQLIQLYCTKKASPQ 57
L P F L I S I ++H + + TNA++ L Q I + +
Sbjct: 30 LQPPSRPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFI----SASFALN 85
Query: 58 STKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S F FT + PN+F++N +I+ C P ++ + + + + + +T+ +
Sbjct: 86 SVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLV 145
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY------------------- 154
+C C++ LG+ +H H+ K+GF ++ V T L+ FY
Sbjct: 146 KACTFMCAVE---LGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCER 202
Query: 155 ------------ASNKDISSGKKVFDQMPMRSSATWNAMINGYC---------------- 186
A D+ S +K+F++MP R++ATWN MI+GY
Sbjct: 203 DAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMP 262
Query: 187 --------------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
SQ+K+ +D AL ++ +M ++ G+ P + TM V S + +G
Sbjct: 263 TKDIISWTTMITCYSQNKQYQD----ALAIYSEMRLN--GIIPDEVTMSTVASACAHIGA 316
Query: 233 LEFGACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
LE G +H Y M + + DV+IG+ALVDMY+KCG LD +LLIF ++ +KN+ W A+
Sbjct: 317 LELGKEIHHYVMSQGLNL---DVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAV 373
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G+A+HG +A+R+ M + PN VTF S+ +AC HAGLV+EG F +M +
Sbjct: 374 IEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYD 433
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ P I+HY C+VD+L ++G+L EA I + +P++I+W +LL+ C +HG+ + E
Sbjct: 434 IRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAV 493
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSSIL 470
+ L+ L+P S + L ++YA + W +V +R MK K VE + PGSS +
Sbjct: 494 EQLMILEP--------MNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWI 545
Query: 471 Q 471
+
Sbjct: 546 E 546
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 196/327 (59%), Gaps = 17/327 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T ++ YA + ++ + + +FD M R WN MI+GY + ALVLFR ML
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE-----ALVLFRRML 182
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ KP + T++ VLS QLG LE G VH Y+E + +V +GTALVDMYSKC
Sbjct: 183 K--AKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI--QFNVHVGTALVDMYSKC 238
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L++A L+F ++ +K+V+ W +M G A+HG EA++L SM G+ P +TF +
Sbjct: 239 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 298
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+AC H+G V EG +F+ MK ++G+EP I+HY C+V+LLGRAGH+E+AY + + I+PD
Sbjct: 299 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPD 358
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+LW +LL AC +HG +ALGEK+ ++L+ S ++ LSNIYA+ W
Sbjct: 359 PVLWGTLLGACRLHGKIALGEKIVELLVDQN--------LANSGTYILLSNIYAAVGNWD 410
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTT 474
V +R MK V+ EPG S ++
Sbjct: 411 GVARLRTMMKDSGVKKEPGCSSIEVNN 437
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MPE + TA++ Y+K G LD A ++F M E++ + W M G +G NEA+ L
Sbjct: 119 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 178
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M KPN VT S+ +AC G +E G + +++ G++ ++ + +VD+ +
Sbjct: 179 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENN-GIQFNVHVGTALVDMYSK 237
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G LE+A I K D + W S++ +HG
Sbjct: 238 CGSLEDARLVFDKIDDK-DVVAWNSMIVGYAMHG 270
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P +++++F + K ++ T + L +C + +L + GR +H ++ G FNV
Sbjct: 171 PNEALVLFRRML-KAKAKPNEVTVLSVLSACGQLGALES---GRWVHSYIENNGIQFNVH 226
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
V T L+ Y+ + + VFD++ + WN+MI GY + AL LF+
Sbjct: 227 VGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQE-----ALQLFKS 281
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M G+ PT+ T + +LS G + G + M K Y E + +V++
Sbjct: 282 MC--RMGLHPTNITFIGILSACGHSGWVTEGWDIFNKM-KDEYGIEPKIEHYGCMVNLLG 338
Query: 266 KCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGK---GNEAIRLL 308
+ G ++ A + M E + + W + +HGK G + + LL
Sbjct: 339 RAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 385
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y+ G LD ++ +F R + +V WTA+ G A+ G A +L D+M + + V+
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPE----KSLVSL 127
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIM 380
T++ G ++ LFD M+ + GV ++ ++D + G EA + ++
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGV-----CWNVMIDGYTQNGMPNEALVLFRRML 182
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKV 410
KP+ + S+LSAC G + G V
Sbjct: 183 KAKAKPNEVTVLSVLSACGQLGALESGRWV 212
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 264/481 (54%), Gaps = 53/481 (11%)
Query: 25 KQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
K++HA LIT+ L + +LI LY + +S +++ H P+ +L+NT+ R
Sbjct: 5 KRLHAHLITSGLHQQENHLRKLITLYTSSSSSLHHARLLFDAVYH---PSTYLYNTMFRV 61
Query: 83 --CTP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+P P ++L+ + G D +T+ F L +C+ +L+ L G+++H K G
Sbjct: 62 YAASPTPLHALLLHRHMFRHGPPP-DTYTFPFLLKACS---ALAHLLKGQELHCQALKFG 117
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ-SKKAKDCAFN 198
+V V +LIH Y SN + S ++VFD M R A+W ++ Y + S +A F+
Sbjct: 118 LGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFD 177
Query: 199 -------------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
AL LFR++ ++P+D+ ++ VL + LG L
Sbjct: 178 EMPERSVVSYSAMLAAYVRGNRFREALELFRELFS--VKIEPSDSCVMSVLCACANLGAL 235
Query: 234 EFGACVHGYM--EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+ G V+ ++ K Y+ D I TAL+DM+ KCG +++ALL+F +EK+V WTAM
Sbjct: 236 DVGRWVYSFVCHSKGDYV---DSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAM 292
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+G+A+HG G + I + M D G+KP+ VTF +L + C H+GLV EGL+ FD M+S +G
Sbjct: 293 LSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFG 352
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
VEP ++H+ C+VDLLGRAG +++A I +P +P+A +W +LL+AC V+ +V +GE
Sbjct: 353 VEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAA 412
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ L++ +P ++ L ++Y A RW +VE V+ +MK PG S+++
Sbjct: 413 QWLIKDEP--------WNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIE 464
Query: 472 T 472
Sbjct: 465 V 465
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 232/446 (52%), Gaps = 25/446 (5%)
Query: 23 HIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
HI+Q+HA ++ N L+ + +L+ Y KA + + + +
Sbjct: 18 HIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFA 77
Query: 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
+ F + G +T D++T F + +C + L +GR IH V K G +
Sbjct: 78 KAGDHAGCYATFRELLRCG-VTPDNYTLPFVIRTCR---DRTDLQIGRVIHDVVLKHGLL 133
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC-AFNAL 200
+ V +L+ YA + +++F++M + TW MI Y DC A+ +L
Sbjct: 134 SDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-------DCNAYESL 186
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
VLF M + GV P MV V++ ++LG + + Y+ + + DV +GTA+
Sbjct: 187 VLFDRMREE--GVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGF--SLDVILGTAM 242
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY+KCG +++A +F RM+EKNV++W+AM HG+G +AI L M C + PN
Sbjct: 243 IDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNR 302
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF SL AC HAGL+EEGL F++M + V P +KHY+C+VDLLGRAG L+EA I
Sbjct: 303 VTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIE 362
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ ++ D LW +LL AC +H + L EK LL+LQP+ +V LSNIY
Sbjct: 363 AMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQ--------NPGHYVLLSNIY 414
Query: 441 ASAERWPDVESVRKQMKVKRVETEPG 466
A A +W V R M ++++ PG
Sbjct: 415 AKAGKWEKVAKFRDMMTQRKLKKIPG 440
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/452 (34%), Positives = 244/452 (53%), Gaps = 29/452 (6%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HA++ + PL A +L+ LYC S H +F NLFL+N +IR
Sbjct: 21 KQLHARICQVGISFNPLLATKLVNLYCI----CNSLTNAHLLFDRISKRNLFLWNVMIRG 76
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
P + + Y + L D FT+ F L +C+ +LS + G++IH V + G
Sbjct: 77 YAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACS---ALSAMEEGKKIHKDVIRSGL 133
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+V V LI YA + S ++VFD++ R WN+M+ Y + + A +
Sbjct: 134 ESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRV 193
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+ F +G+KPT+ T V ++ S+ GLL G +HGY + + E++ + TAL
Sbjct: 194 MAF-------NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGF--ESNDKVKTAL 244
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY+K G ++ A +F + EK V++W AM TG A+HG NEA+ L M+ V P+
Sbjct: 245 MDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKG-KVLPDH 303
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF + AAC H GL+ EG F +M S + + P ++HY+C++DLLG G LEEAY IM
Sbjct: 304 ITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIM 363
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ ++PDA +W +LL +C +HG+V +GE + L++L+P+ ++V LSN+Y
Sbjct: 364 EMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPD--------DGGNYVILSNMY 415
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
A A +W V +R M K ++ S ++
Sbjct: 416 AQAGKWDGVARLRDLMMNKGLKKSIACSWIEV 447
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 163/335 (48%), Gaps = 26/335 (7%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q+H + + G FN L+AT L++ Y +++ +FD++ R+ WN MI GY
Sbjct: 20 GKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAW 79
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A + RD G+ P T VL S L +E G +H + ++
Sbjct: 80 NG--PYELAISLYYQMRDY-----GLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSG 132
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
E+DVF+G AL+DMY+KCGC+++A +F ++ E++V+ W +M + +G+ +E++ L
Sbjct: 133 L--ESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLAL 190
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M G+KP TF AA GL+ +G L + G E + K + ++D+
Sbjct: 191 CRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELH-GYSWRHGFESNDKVKTALMDMYA 249
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA-----LGEKVGKILLQLQPEVT 422
++G + A + + K + W ++++ +HG E GK+ L +T
Sbjct: 250 KSGSVNVARSLFELLEEKR-VVSWNAMITGYAMHGHANEALDLFKEMKGKV---LPDHIT 305
Query: 423 FVDV--ACT-----SEDFVALSNIYASAERWPDVE 450
FV V AC+ +E + ++ + WP V+
Sbjct: 306 FVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQ 340
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 202/368 (54%), Gaps = 20/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D++T F + +C L L +GR IH V K G + V L+ Y ++I +
Sbjct: 159 DNYTLPFVIRACR---DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDAR 215
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD+M R TW MI GY K A +LVLF M + GV P MV V+
Sbjct: 216 FLFDKMQERDLVTWTVMIGGYAECGK-----ANESLVLFEKMREE--GVVPDKVAMVTVV 268
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
++LG + + Y+++ + + DV +GTA++DMY+KCGC+++A IF RM EKN
Sbjct: 269 FACAKLGAMHKARIIDDYIQRKKF--QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN 326
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W+AM HG+G +A+ L M G+ P+ +T SL AC HAGLVEEGL F
Sbjct: 327 VISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFS 386
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + V +KHY+C+VDLLGRAG L+EA I + I+ D LW + L AC H DV
Sbjct: 387 SMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDV 446
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L EK LL+LQ + +V LSNIYA+A RW DV +R M +R++
Sbjct: 447 VLAEKAATSLLELQSQ--------NPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKT 498
Query: 465 PGSSILQT 472
PG + ++
Sbjct: 499 PGWTWIEV 506
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 200/368 (54%), Gaps = 20/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D++T F + +C L L +GR IH V K G + V L+ Y ++I +
Sbjct: 835 DNYTLPFVIRACR---DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDAR 891
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD+M R TW MI GY A +LVLF M + GV P MV V+
Sbjct: 892 FLFDKMXERDLVTWTVMIGGYAECGN-----ANESLVLFDKMREE--GVVPDKVAMVTVV 944
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
++LG + + Y+++ + + DV +GTA++DM++KCGC+++A IF RM EKN
Sbjct: 945 FACAKLGAMHKARTIDDYIQRKKF--QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN 1002
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W+AM HG+G +A+ L M G+ PN +T SL AC HAGLVEEGL F
Sbjct: 1003 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 1062
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M + V +KHY+C+VDLLGRAG L+EA I + + D LW + L AC H DV
Sbjct: 1063 XMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDV 1122
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L EK LL+LQP+ ++ LSNIYA+A RW DV +R M +R++
Sbjct: 1123 XLAEKAATSLLELQPQ--------NPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKI 1174
Query: 465 PGSSILQT 472
PG + ++
Sbjct: 1175 PGWTWIEV 1182
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 149/294 (50%), Gaps = 17/294 (5%)
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
Y+ AL +C + RQ+H + G + N++VA LI+FY+ + + +FD
Sbjct: 65 YISALVNCRNLTQV------RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD 118
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
M +R S +W+ M+ G+ K D N FR+++ G +P + T+ V+
Sbjct: 119 GMCVRDSVSWSVMVGGFA----KVGD-YINCFGTFRELI--RCGARPDNYTLPFVIRACR 171
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L L+ G +H + K + + D F+ ALVDMY KC +++A +F +M+E++++TW
Sbjct: 172 DLKNLQMGRLIHHIVYK--FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T M G A GK NE++ L + MR+ GV P+ V ++ AC G + + + D+
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQ 288
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + + + ++D+ + G +E A + K + I W ++++A HG
Sbjct: 289 RKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHG 341
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 140/274 (51%), Gaps = 11/274 (4%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
RQ+H + G + N++VA L+ FY+ + + +FD M +R S +W+ M+ G+
Sbjct: 755 RQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA-- 812
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
K D N FR+++ G +P + T+ V+ L L+ G +H + K +
Sbjct: 813 --KVGD-YMNCFGTFRELI--RCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK--F 865
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ D F+ ALVDMY KC +++A +F +M E++++TWT M G A G NE++ L
Sbjct: 866 GLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLF 925
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
D MR+ GV P+ V ++ AC G + + + D ++ K + + + ++D+ +
Sbjct: 926 DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK-KFQLDVILGTAMIDMHAK 984
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G +E A + K + I W ++++A HG
Sbjct: 985 CGCVESAREIFDRMEEK-NVISWSAMIAAYGYHG 1017
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/360 (37%), Positives = 206/360 (57%), Gaps = 20/360 (5%)
Query: 118 RFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS- 175
R C++S LG H + K GF +++++ T L+ FYA + + + +FD M R+S
Sbjct: 38 RSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSN 97
Query: 176 -ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
TWN MI+ Y + A+ +F+ M + VKPT+ TMV +LS + LG L+
Sbjct: 98 SVTWNTMISAYVQCGEFG-----TAISMFQQMQSE--NVKPTEVTMVSLLSACAHLGALD 150
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +HGY+ + DV +G AL+DMY KCG L+ A+ +F + KN+ W ++ G
Sbjct: 151 MGEWIHGYIRTKRL--KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVG 208
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ ++G+G EAI M G+KP+ VTF + + C H+GL+ G F M +G+EP
Sbjct: 209 LGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEP 268
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
++HY C+VDLLGRAG+L+EA I +P+KP++++ SLL AC +H D LGE+V + L
Sbjct: 269 GVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQL 328
Query: 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
L+L P C ++V LSN+YAS RW DV + RK M + V PG S ++
Sbjct: 329 LELDP--------CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNN 380
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 163/489 (33%), Positives = 254/489 (51%), Gaps = 48/489 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L T + + QIHA ++ + L Q++ + + + + VF
Sbjct: 13 LRHLHGRKTRTQLPQIHAHILRHHLHQS---NQILSHFISVCGALDKMGYANLVFHQTQN 69
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PNL LFN++I+ C P ++S+L+F+ ++G+ D+FT+ L SC+ C +
Sbjct: 70 PNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWP-DEFTFAPLLKSCSGICDNR---I 125
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ +H V GF + +I Y S + KKVFD+M R WN MI G+C
Sbjct: 126 GKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCK 185
Query: 188 ------------QSKKAKDCAFN--------------ALVLFRDMLVDVSGVKPTDTTMV 221
Q + ++N AL LFR+M G +P D T+V
Sbjct: 186 VGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMW--DHGFEPDDATVV 243
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+L V ++LG ++ G +H Y E + + + + +G +LVD Y KCG L+ A +F+ M
Sbjct: 244 TILPVCARLGAVDVGEWIHSYAESSRLL-RDFISVGNSLVDFYCKCGILETAWRVFNEMP 302
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+KNV++W AM +G+ +GKG L + M + GV+PN TF + + C HAGLVE G +
Sbjct: 303 QKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRN 362
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF +M +EP ++H+ C+VDLL R G +EEA + + +P++P+A+LW SLLSA
Sbjct: 363 LFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTI 422
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GDV E K L++L+P S ++V LSN+YA +W +VE VR MK K +
Sbjct: 423 GDVKHAECAVKELIELEP--------WNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNI 474
Query: 462 ETEPGSSIL 470
PG S++
Sbjct: 475 RKNPGQSMV 483
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 250/484 (51%), Gaps = 64/484 (13%)
Query: 26 QIHAQLITNALKSPPLYAQL-IQLYCTKKASPQSTKIVH--FVFTHFDPPNLFLFNTLIR 82
QIHA ++ + L P Y L ++L+ +A KI H +F P+LFLF I
Sbjct: 45 QIHAAILRHNLLIHPRYPVLNLKLH---RAYASHGKIRHSLALFHQTIDPDLFLFTAAIN 101
Query: 83 CTPP---QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+D + + + ++FT+ L SC+ G+ IH HV K G
Sbjct: 102 TASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS-------GKLIHTHVLKFG 154
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS--SAT-------------------- 177
+ VAT L+ YA D+ S +KVFD+MP RS S+T
Sbjct: 155 LGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFD 214
Query: 178 ---------WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
WN MI+GY + +AL+LF+ +L D KP + T+V LS S
Sbjct: 215 RMCERDIVSWNVMIDGYSQHGFPS-----DALMLFQKLLAD-GKPKPDEITVVAALSACS 268
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
Q+G LE G +H ++ + +V + TAL+DMYSKCG L+ A+L+F+ K+++ W
Sbjct: 269 QIGALETGRWIHVFVNSSRI--RLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAW 326
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
AM TG A+HG +A+RL D M+ G++P +TF AC HAGLV EG+ +F++M
Sbjct: 327 NAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMG 386
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
++G++P I+HY C+V LLGRAG L+ AY I + ++ D++LW S+L +C +HG+ LG
Sbjct: 387 QEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLG 446
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
+++ + L+ S +V LSNIYA + V VR MK K + EPG
Sbjct: 447 KEIAEYLIGQN--------ISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGI 498
Query: 468 SILQ 471
S ++
Sbjct: 499 STIE 502
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 170/521 (32%), Positives = 253/521 (48%), Gaps = 80/521 (15%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP--LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L+ T + I QIHA +I +L L L +L+ +S VF P
Sbjct: 10 LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFAC--SSANDLLYARSVFDEIPSP 67
Query: 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ F++NT+IR PQ+S+ +F + + D ++ + +C R G
Sbjct: 68 DTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGN---G 124
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV---------------------- 166
+++H V K G ++ V T LI YA DI + +
Sbjct: 125 QKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRV 184
Query: 167 ---------FDQMPMRSSATWNAMINGYCS-----QSKKAKD--CAFN------------ 198
FD+MP R +WN MI+G+ S +KK D C +
Sbjct: 185 GEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYA 244
Query: 199 -------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
AL LF +M ++ V P TMV VLS +G L G +H +E+ E
Sbjct: 245 KARQSNEALRLFHEM--QLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRI--E 300
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
D+ +GT+LVDMY+KCG +DN+L +F+ M ++V W+AM G+A HG G A+ M
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM 360
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+KPN VTF + +AC H GLV+EG F +M + V P I+HY C+VD+LGRAG
Sbjct: 361 ISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGR 420
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L+EA I +P PDAI+WR+LL AC ++ +V + E+ LL+L+P V
Sbjct: 421 LQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHV--------DG 472
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++V LSNIY+ A+ W V +VR+ MK ++ PGSS ++
Sbjct: 473 NYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEV 513
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 163/537 (30%), Positives = 273/537 (50%), Gaps = 92/537 (17%)
Query: 3 SLPGHRCFALLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKI 61
S P + L ++K +T + + + A +I TNA++ L Q I + + S
Sbjct: 131 SCPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFI----SASFALNSVHY 186
Query: 62 VHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
F FT + PN+F++N +I+ C P ++ + + + + + +T+ + +C
Sbjct: 187 PVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACT 246
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY----------------------- 154
C++ LG+ +H H+ K+GF ++ V T L+ FY
Sbjct: 247 FMCAVE---LGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFA 303
Query: 155 --------ASNKDISSGKKVFDQMPMRSSATWNAMINGYC-------------------- 186
A D+ S +K+F++MP R++ATWN MI+GY
Sbjct: 304 WTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDI 363
Query: 187 ----------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
SQ+K+ +D AL ++ +M ++ G+ P + TM V S + +G LE G
Sbjct: 364 ISWTTMITCYSQNKQYQD----ALAIYSEMRLN--GIIPDEVTMSTVASACAHIGALELG 417
Query: 237 ACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+H Y M + + DV+IG+ALVDMY+KCG LD +LLIF ++ +KN+ W A+ G+
Sbjct: 418 KEIHHYVMSQGLNL---DVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGL 474
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A+HG +A+R+ M + PN VTF S+ +AC HAGLV+EG F +M + + P
Sbjct: 475 AVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPD 534
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY C+VD+L ++G+L EA I + +P++I+W +LL+ C +HG+ + E + L+
Sbjct: 535 IRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLM 594
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSSILQ 471
L+P S + L ++YA + W +V +R MK K VE + PGSS ++
Sbjct: 595 ILEP--------MNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIE 643
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 172/541 (31%), Positives = 253/541 (46%), Gaps = 104/541 (19%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T H+KQ+HAQ+IT+ + P + P +F H P L+N+
Sbjct: 108 TLRHLKQVHAQIITH--HNSPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNS 165
Query: 80 LIRC----TPPQDSVLVFAYWVSKGLLTFDDFTY-------------------------- 109
LIR P +++ ++ + GL D TY
Sbjct: 166 LIRALSSSKTPLEALPLYHTMLQSGLKP-DHMTYPFVIKACNESSVTWFGLLVHTHVVKS 224
Query: 110 ---------------------------VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
+F L S S + + G HV + +F
Sbjct: 225 GFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVF 284
Query: 143 NVLVA------TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKA-- 192
+ +V T+I+ YA I K++FD+MP R+ +WN+M+ G+ C + A
Sbjct: 285 DRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFG 344
Query: 193 --------------------KDCA--FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
C AL LF M GVKPT+ T+V +LS + L
Sbjct: 345 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM--RAVGVKPTEATVVSLLSACAHL 402
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G L+ G +H Y+ E + +GTALVDMY+KCG + A +F+ M K+VL W
Sbjct: 403 GALDKGLHLHTYINDNRI--EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNT 460
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ GMAIHG EA +L M++ GV+PN +TF ++ +AC HAG+V+EG L D M S +
Sbjct: 461 IIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSY 520
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G+EP ++HY C++DLL RAG LEEA I +P++P+ +LL C +HG+ LGE V
Sbjct: 521 GIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMV 580
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
GK L+ LQP C S ++ LSNIYA+A++W D VR MKV + PG S++
Sbjct: 581 GKRLINLQP--------CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 632
Query: 471 Q 471
+
Sbjct: 633 E 633
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 162/487 (33%), Positives = 249/487 (51%), Gaps = 49/487 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T + +++IHA + + L Q++ + + S + +F P +
Sbjct: 16 LHGRETRTQLREIHAHFLRHGLNQ---LNQILSHFVSICGSLNKMAYANRIFKQTQNPTI 72
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
LFN +I+ P ++S +F+ ++G+ D++T L +C+ SL L LG+
Sbjct: 73 ILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWP-DEYTLAPLLKACS---SLGVLQLGKC 128
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS--- 187
+H V GF + +I Y+S + +KVFD+M R WN MI+G+C
Sbjct: 129 MHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGD 188
Query: 188 ---------QSKKAKDCAFN--------------ALVLFRDMLVDVSGVKPTDTTMVCVL 224
Q +K ++N AL LF DML G KP + T+V VL
Sbjct: 189 VDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLD--WGFKPDEATVVTVL 246
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ ++LG ++ G +H Y K+ + + V +G ALVD Y+K G + A +F M KN
Sbjct: 247 PICARLGSVDVGKWIHSYA-KSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKN 305
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W + +G+A++G G + LL+ M + GV+PN TF + + C HAGL E G L
Sbjct: 306 VISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLA 365
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLLSACNVHGD 403
+M +EP ++HY C+VDLLGR+G + EAY+ I +P P+A LW SLLSAC HGD
Sbjct: 366 SMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGD 425
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V L K L+ L+P S ++V LSN+YA ERW V +VR M+ K V+
Sbjct: 426 VELAHLAVKELIDLEP--------WNSGNYVLLSNMYAEEERWDKVANVRGMMREKNVKK 477
Query: 464 EPGSSIL 470
PG S++
Sbjct: 478 TPGQSVI 484
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 255/471 (54%), Gaps = 29/471 (6%)
Query: 9 CFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
C LL+ +TP+ + Q A L+ + L S PL + A +V +
Sbjct: 34 CLRLLERS--STPASLLQSFAFLLKSGLHSNPLVVTRLFAASASAAPALLEPLVSSLLGP 91
Query: 69 FDPPNLFLFNTLIR--CTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
P + FL NTLIR T P + F + + + + FT+ F L SCA
Sbjct: 92 SLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGS 151
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNA 180
+ G Q H K GF + V+ TLIH Y+ + + VF++MP S+ TW+A
Sbjct: 152 PDV--GLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSA 209
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY + +A+VLFR M VSGV+P + T++ VL+ ++ LG LE V
Sbjct: 210 MIGGYVRAGLSS-----DAVVLFRGM--QVSGVRPDEVTVIGVLAAAADLGALELTRWVG 262
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
++E+ V + AL+D +KCG +D A+ +F M E+ V++WT++ +A+ G+
Sbjct: 263 RFVEREGI--GKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGR 320
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA+ + + M+ GV P+ V F + AC HAG+V+EG FD+MK+++G+EP I+HY
Sbjct: 321 GKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYG 380
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VD+ GRAG +E+ F+ +P+KP+ I+WR+L++AC HG + LGE + + LL P
Sbjct: 381 CMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFP- 439
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++V LSN+YA +RW + +R++M + ++ PG S+++
Sbjct: 440 -------AHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVE 483
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 161/524 (30%), Positives = 257/524 (49%), Gaps = 82/524 (15%)
Query: 23 HIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
IKQ+HA ++ L P +LI + + T VF P+ F++NTLI
Sbjct: 23 QIKQVHALMVLRGFLSDPSALRELI--FASSVGVRGGTAHARLVFDRIPHPDRFMYNTLI 80
Query: 82 RCTP----PQDSVLVFAYWVSK-----GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
R P+D+V ++A G + D T+ F L +CA + T G Q+H
Sbjct: 81 RGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASET---GAQVH 137
Query: 133 VHVTKRG-----FMFNVLVA--------------------------TTLIHFYASNKDIS 161
HV K G F+ N L+ + +I +A DI
Sbjct: 138 AHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIG 197
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKA-----------KDC-AFNALV-------- 201
+ +++FD+ P++ +WN MI Y A +D ++NA++
Sbjct: 198 AARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGS 257
Query: 202 ------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
LF M G KP TM+ +LS + G ++ G +H ++ F
Sbjct: 258 HKQAMELFEQM--QAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTV 315
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+G AL+DMY+KCG + +AL +F M++KNV TW ++ G+A+HG EAI + M
Sbjct: 316 LGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGN 375
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
VKP+ +TF ++ AC H G+V++G F+ M+ ++ +EP++KHY C+VD+L RAG L+EA
Sbjct: 376 VKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEA 435
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
+ FI + I+P+ ++WR+LL AC +HG++ L E + LL+ + + S DFV
Sbjct: 436 FEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSD--------ASGDFVL 487
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLD 479
LSNIYAS W E++RK M V E G +++ ++ +D
Sbjct: 488 LSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVDGSSKDVID 531
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/472 (33%), Positives = 253/472 (53%), Gaps = 31/472 (6%)
Query: 9 CFALLKLK-AITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQ---STKIVH 63
C ALL+L A + + KQIHA+ + + S PL A+ + + +P + ++
Sbjct: 15 CVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLS 74
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+ H P + F NT++R V + L D TY + +CAR +L
Sbjct: 75 RLLPH-GPLDPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALR 133
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS--ATWNAM 181
G +H K GF+ V V +L+H Y + S KVFD+MP+R +WN+M
Sbjct: 134 E---GECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSM 190
Query: 182 INGYCSQSKKAKDCAFNALVLFRDML-VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+N + + + + L +F +ML VD + P T+V VL+ ++ G L G VH
Sbjct: 191 LNSFAANGRPNE-----VLTVFWEMLGVDFA---PDGFTIVSVLTACAEFGALALGRRVH 242
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHG 299
Y+EK + EN + AL+D+Y+KCG +++A IF M + V++WT++ G+A +G
Sbjct: 243 VYVEKVGLV-ENS-HVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANG 300
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G EA+ L M + P +T + AC H GLV++G FD MK +G+ P I+H
Sbjct: 301 FGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHL 360
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLLGRAG +EEAY++I+ +P++P+A++WR+LL +C +H + LG+ + L++L P
Sbjct: 361 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDP 420
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YA+ W DV +RK M RV PG S+++
Sbjct: 421 --------GHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVE 464
>gi|10086462|gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]
Length = 539
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 254/477 (53%), Gaps = 40/477 (8%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
R + ++ + S IKQ+ + +T +S L ++L++ S + +F
Sbjct: 3 RVYMETMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQ--IF 60
Query: 67 THFDPPNLFLFNTLIRC-TPPQDSVLVFAYWVS--------KGLLTFDDFTYVFALGSCA 117
+ P +N +IR L F+++ S + D T F L +CA
Sbjct: 61 RYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACA 120
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R S + Q+H + +RG + L+ TTL+ Y+ N D+ S K+FD+MP+R A+
Sbjct: 121 RALCSSAM---DQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVAS 177
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNA+I G S ++ A A+ L++ M + G++ ++ T+V L S LG ++ G
Sbjct: 178 WNALIAGLVSGNR-----ASEAMELYKRM--ETEGIRRSEVTVVAALGACSHLGDVKEGE 230
Query: 238 CV-HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGM 295
+ HGY ++V + A +DMYSKCG +D A +F + +K+V+TW M TG
Sbjct: 231 NIFHGY-------SNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGF 283
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A+HG+ + A+ + D + D G+KP+ V++ + AC HAGLVE GL +F+NM K GVE +
Sbjct: 284 AVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERN 342
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+KHY C+VDLL RAG L EA++ I + + PD +LW+SLL A ++ DV + E + +
Sbjct: 343 MKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIK 402
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ DFV LSN+YA+ RW DV VR M+ K+V+ PG S ++
Sbjct: 403 EMGVN--------NDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEA 451
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 247/463 (53%), Gaps = 27/463 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + + +IHA ++ N + P ++ + +C S S VF P
Sbjct: 12 LQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSG-SLAYAQLVFHRIHNPQT 70
Query: 75 FLFNTLIRC-----TPPQDSVLVF-AYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+N++IR +P Q +VF + +S D +T+ F L +C
Sbjct: 71 PAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC--- 127
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R++H + + G+ +V++ T LI YA N I + KVF++MP R +WN+MI+ YC
Sbjct: 128 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 187
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ AL ++ M +S V T+V +LS + +G L G +H + +
Sbjct: 188 GLHEE-----ALKMYDQM--RISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER-R 239
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ EN +F+G AL+DMY+KCG L +AL IF+ M +++V TW +M G +HG+G+EAI
Sbjct: 240 LVEN-IFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFF 298
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
SM GV+PN++TF L C H GLV+EG+ F M S++ ++P IKHY C+VDL GR
Sbjct: 299 GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGR 358
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EA I P + D +LWR+LL +C +H +V +GE + L+QL +
Sbjct: 359 AGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG--------SL 410
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D V LS IYA A+ V +RK ++ + ++T PG S ++
Sbjct: 411 GAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIE 453
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 260/474 (54%), Gaps = 32/474 (6%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
+L + T IK H+ I + L YA + +L P K H+ + FD
Sbjct: 15 ILASQRCNTVKQIKSTHSLFIIHGLHRNT-YA-ISKLLTAFLHLPNLNKHFHYASSIFDS 72
Query: 72 ---PNLFLFNTLIR-CTPPQDSVLVFAYWV-----SKGLLTFDDFTYVFALGSCARFCSL 122
PN F+++T+IR C+ L Y++ + +T T+ F + +C + C
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFF 132
Query: 123 STLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
S +G+QIH V K G F+ + V T ++ Y +K + +KVFD++P W+ +
Sbjct: 133 S---VGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVL 189
Query: 182 INGYCSQSKKAKDCAFNA--LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+NGY C + L +F++MLV G++P + ++ L+ +Q+G L G +
Sbjct: 190 MNGYVR-------CGLGSEGLEVFKEMLV--RGIEPDEFSVTTALTACAQVGALAQGKWI 240
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H +++K ++ E+DVF+GTALVDMY+KCGC++ A+ +F ++ +NV +W A+ G A +G
Sbjct: 241 HEFVKKKRWI-ESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYG 299
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+A LD + R+ G+KP++V + AAC H G +EEG + +NM++++G+ P +H
Sbjct: 300 YAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEH 359
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSCIVDL+ RAG L++A + I +P+KP A +W +LL+ C H +V LGE + LL L+
Sbjct: 360 YSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLE 419
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V V LSNIY S +R P+ VR ++ + + PG S+L+
Sbjct: 420 KG----NVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEV 469
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 247/463 (53%), Gaps = 27/463 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + + +IHA ++ N + P ++ + +C S S VF P
Sbjct: 30 LQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSG-SLAYAQLVFHRIHNPQT 88
Query: 75 FLFNTLIRC-----TPPQDSVLVF-AYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+N++IR +P Q +VF + +S D +T+ F L +C
Sbjct: 89 PAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC--- 145
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R++H + + G+ +V++ T LI YA N I + KVF++MP R +WN+MI+ YC
Sbjct: 146 REVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQT 205
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ AL ++ M +S V T+V +LS + +G L G +H + +
Sbjct: 206 GLHEE-----ALKMYDQM--RISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGER-R 257
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ EN +F+G AL+DMY+KCG L +AL IF+ M +++V TW +M G +HG+G+EAI
Sbjct: 258 LVEN-IFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFF 316
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
SM GV+PN++TF L C H GLV+EG+ F M S++ ++P IKHY C+VDL GR
Sbjct: 317 GSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGR 376
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EA I P + D +LWR+LL +C +H +V +GE + L+QL +
Sbjct: 377 AGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLG--------SL 428
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D V LS IYA A+ V +RK ++ + ++T PG S ++
Sbjct: 429 GAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIE 471
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 252/471 (53%), Gaps = 29/471 (6%)
Query: 9 CFALLKLKAITTPS--HIKQIHAQLITNA---LKSPPLYAQLIQLYCTKKASPQSTKIVH 63
C ALL+L + +PS KQ+HA+ + A S PL A+ + + +P V
Sbjct: 21 CVALLRLH-LASPSLATAKQLHARALRAAPGVTPSHPLLAKHLLFHLAALKAPPLRYAVA 79
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+ P+ F NT++R V + L D TY L +CAR +L
Sbjct: 80 VLSGLLPSPDPFSLNTVLRIFASSARPRVALALHRRHLAPPDTHTYPPLLQACARLLALR 139
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAM 181
G +H K G + V V +L+H Y + S +VFD++P R+ +WN++
Sbjct: 140 ---YGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSV 196
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+NG+ + + + L +FR+ML +V P T+V VL+ +++G+L G VH
Sbjct: 197 LNGFAANGRPNE-----VLTVFREML-EVE-FAPDGFTVVSVLTACAEIGVLALGRRVHV 249
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGK 300
++ K + + G AL+D+Y+KCG +D+A +F M + V++WT++ G+A++G
Sbjct: 250 FVAKVGLV--GNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGF 307
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A++L M + P +T + AC H GLV++G FD MK+++G+ P I+H
Sbjct: 308 GMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLG 367
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGRAG +EEA+N+I +P++P+A++WR+LL AC +H + +GE L++L P
Sbjct: 368 CMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPG 427
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YA RW DV +RK M V PG S+++
Sbjct: 428 --------HSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVE 470
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 236/435 (54%), Gaps = 56/435 (12%)
Query: 73 NLFLFNTLI-----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
+L +NTLI R P + L + ++ D+ T + A+ C + + L L
Sbjct: 190 DLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQ---MRDLEL 246
Query: 128 GRQIHVHVTKRGF-----MFNVLVA--------------------------TTLIHFYAS 156
GR++H V G + N L+ TT+I +A
Sbjct: 247 GRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAK 306
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+ +KVFD+MP R WNA++ GY Q K+ K+ AL LF +M + V P
Sbjct: 307 FGLMDDARKVFDEMPERDVFPWNALMTGYV-QCKQCKE----ALSLFHEM--QEASVVPD 359
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
+ TMV +L+ SQLG LE G VH Y+EK + V +GT+L+DMY+KCG ++ A+ I
Sbjct: 360 EITMVNLLTACSQLGALEMGMWVHRYIEKHRLV--FSVALGTSLIDMYAKCGNIEKAIHI 417
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F + EKN LTWTAM G+A HG NEAI +M + G KP+ +TF + +ACCHAGLV
Sbjct: 418 FKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLV 477
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
+EG F M++K+ +E +KHYSC++DLLGRAGHL+EA + +P++PDA++W ++
Sbjct: 478 KEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFF 537
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC + G+++LGEK L+++ P + + +V L+N+YA A + VR M
Sbjct: 538 ACRMQGNISLGEKAAMKLVEIDPSDSGI--------YVLLANMYAEANMRKKADKVRAMM 589
Query: 457 KVKRVETEPGSSILQ 471
+ VE PG S ++
Sbjct: 590 RHLGVEKVPGCSCIE 604
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 171/386 (44%), Gaps = 66/386 (17%)
Query: 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
RC P ++ + G D T+ F L +CAR L G HV + G
Sbjct: 107 RCLP------LYRALLRSGTARPDHLTFPFLLKACAR---LREWGYGDAALAHVLRLGLD 157
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+V V HF + + +++FD+ P+R +WN +I GY + A+ AL
Sbjct: 158 SDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAE-----ALE 212
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LF M+ + + V+P + TM+ +S Q+ LE G +HG+++ V + AL+
Sbjct: 213 LFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGV--SCTVRLMNALM 270
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG---------------------- 299
DMY KCG L+ A +F R+ + V++WT M G A G
Sbjct: 271 DMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNA 330
Query: 300 ---------KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL--HLFDNMKS 348
+ EA+ L M++ V P+ +T +L AC G +E G+ H +
Sbjct: 331 LMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRY----- 385
Query: 349 KWGVEPHIKHYSC-----IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+E H +S ++D+ + G++E+A + IP K +A+ W +++ HG
Sbjct: 386 ---IEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEK-NALTWTAMICGLANHGH 441
Query: 404 VALGEKVGKILLQL--QP-EVTFVDV 426
+ + +++L +P E+TF+ V
Sbjct: 442 ANEAIEHFRTMIELGQKPDEITFIGV 467
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 114/232 (49%), Gaps = 17/232 (7%)
Query: 65 VFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF ++F +N L ++C ++++ +F + + + + D+ T V L +C++
Sbjct: 316 VFDEMPERDVFPWNALMTGYVQCKQCKEALSLF-HEMQEASVVPDEITMVNLLTACSQ-- 372
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L +G +H ++ K +F+V + T+LI YA +I +F ++P +++ TW A
Sbjct: 373 -LGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTA 431
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI G + A A+ FR M+ G KP + T + VLS GL++ G
Sbjct: 432 MICGLANHGH-----ANEAIEHFRTMI--ELGQKPDEITFIGVLSACCHAGLVKEGREFF 484
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAM 291
ME +++ E + + ++D+ + G LD A + + M E + + W A+
Sbjct: 485 SLMETKYHL-ERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAI 535
>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 254/477 (53%), Gaps = 40/477 (8%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
R + ++ + S IKQ+ + +T +S L ++L++ S + +F
Sbjct: 3 RVYMETMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQ--IF 60
Query: 67 THFDPPNLFLFNTLIRC-TPPQDSVLVFAYWVS--------KGLLTFDDFTYVFALGSCA 117
+ P +N +IR L F+++ S + D T F L +CA
Sbjct: 61 RYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACA 120
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R S + Q+H + +RG + L+ TTL+ Y+ N D+ S K+FD+MP+R A+
Sbjct: 121 RALCSSAM---DQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVAS 177
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNA+I G S ++ A A+ L++ M + G++ ++ T+V L S LG ++ G
Sbjct: 178 WNALIAGLVSGNR-----ASEAMELYKRM--ETEGIRRSEVTVVAALGACSHLGDVKEGE 230
Query: 238 CV-HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGM 295
+ HGY ++V + A +DMYSKCG +D A +F + +K+V+TW M TG
Sbjct: 231 NIFHGY-------SNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGF 283
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A+HG+ + A+ + D + D G+KP+ V++ + AC HAGLVE GL +F+NM K GVE +
Sbjct: 284 AVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERN 342
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+KHY C+VDLL RAG L EA++ I + + PD +LW+SLL A ++ DV + E + +
Sbjct: 343 MKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIK 402
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ DFV LSN+YA+ RW DV VR M+ K+V+ PG S ++
Sbjct: 403 EMGVN--------NDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEA 451
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 162/494 (32%), Positives = 268/494 (54%), Gaps = 49/494 (9%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFV 65
RC +LL+ T S IKQ+H+ LI +A + P A ++I L+ +S + +
Sbjct: 11 QRCLSLLE--QCRTMSQIKQMHSHLIVSASRLDPFAAGKIISLFAV--SSNADISHAYKL 66
Query: 66 FTHFDPPNLFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
F F++NT+IR ++ ++ ++ + G L +++T+ F L +C
Sbjct: 67 FLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLP-NNYTFSFVLRACTDNSP 125
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
+ G H V K G+ V LIH YA+ + + +K+FD R TW A+
Sbjct: 126 V-----GLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTAL 180
Query: 182 INGYC------------SQSKKAKDCAFNALV-------LFRDML-----VDVSGVKPTD 217
INGY Q + + +++A++ +FR+ L + ++G++P
Sbjct: 181 INGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNH 240
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
+V L+ S LG L+ G +H Y+++ E D +GTALVDMY+KCGC++ A +F
Sbjct: 241 AGIVGALTACSYLGSLDHGRWIHAYVDRN--GTELDRVLGTALVDMYAKCGCIEIACSVF 298
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
+M +K+ +T++ +G+A HG+ +AI+L M+ V PN VTF + +AC GLV+
Sbjct: 299 EKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVD 358
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
EGL +F+ M +G+EP ++HY C+VDLLGRAG LEEA + +P++PD+ + +LL++
Sbjct: 359 EGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNS 418
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C VHGDV LG++ + L++ + V V LSN+YAS+ +W V VRK+M
Sbjct: 419 CRVHGDVELGKETVESLVERGLDHGGV--------HVLLSNMYASSNQWDWVVKVRKEMG 470
Query: 458 VKRVETEPGSSILQ 471
K+V+ PG S ++
Sbjct: 471 AKKVKKVPGCSSIE 484
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 251/485 (51%), Gaps = 73/485 (15%)
Query: 24 IKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQ+HAQ+I A ++ P A+L++ + + +F PN F +NTLIR
Sbjct: 4 LKQLHAQMIKTAQIRDPLAAAELLRFSAV--SDHRDLDYARKIFRSMHRPNCFSYNTLIR 61
Query: 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH------ 132
P D++LVF V + + FT+ +C R L GRQ+H
Sbjct: 62 ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLRE---GRQVHGLAVKF 118
Query: 133 ----------------------------------------VHVTKRGFMFNVLVATTLIH 152
+ KR +V++ +I
Sbjct: 119 GLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMID 178
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
Y ++ + +FD+MP RS +WN MI GY +QS K+ A+ +FR+M ++
Sbjct: 179 GYVRIGELEVARNLFDEMPQRSVVSWNVMIAGY-AQSGHFKE----AVEVFREM--QMAE 231
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V P T+V VL S+LG LE G VH Y + + +DV +G+AL+DMY+KCG ++
Sbjct: 232 VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRN-NIGVDDV-LGSALIDMYAKCGSIEK 289
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
AL +F + ++NV+TW+ + G+A+HG+ + + + M GV P+ VT+ L +AC H
Sbjct: 290 ALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSH 349
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
AGLV EG FD+M G+EP I+HY C+VDLLGRAG LEE+ I+ +PIKPD ++W+
Sbjct: 350 AGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWK 409
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452
+LL AC +HG+V +G++V + L++L P S +VALSNIYAS W V V
Sbjct: 410 ALLGACKMHGNVEMGKRVAEHLMELAPH--------DSGSYVALSNIYASLGNWEGVAKV 461
Query: 453 RKQMK 457
R MK
Sbjct: 462 RLMMK 466
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 148/412 (35%), Positives = 218/412 (52%), Gaps = 25/412 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F + N+ ++ +I + ++ +F +S G+L D T L +C+
Sbjct: 188 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLP-DKITLASLLYACS--- 243
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L +GR IH V K G + V L+ Y ++I + +FD+MP R TW
Sbjct: 244 DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTV 303
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY A +LVLF M + GV P MV V+ ++LG + +
Sbjct: 304 MIGGYAECGN-----ANESLVLFDKMREE--GVVPDKVAMVTVVFACAKLGAMHKARTID 356
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+++ + + DV +GTA++DM++KCGC+++A IF RM EKNV++W+AM HG+
Sbjct: 357 DYIQRKKF--QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 414
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A+ L M G+ PN +T SL AC HAGLVEEGL F M + V +KHY+
Sbjct: 415 GRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYT 474
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGRAG L+EA I + ++ D LW + L AC H DV L EK LL+LQP+
Sbjct: 475 CVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQ 534
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ LSNIYA+A RW DV R M +R++ PG + ++
Sbjct: 535 --------NPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEV 578
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 153/295 (51%), Gaps = 18/295 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D++T F + +C L L +GR IH V K G + V L+ Y ++I +
Sbjct: 29 DNYTLPFVIRACR---DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDAR 85
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD+M R TW MI GY K A +LVLF M + GV P MV V+
Sbjct: 86 FLFDKMQERDLVTWTVMIGGYAECGK-----ANESLVLFEKMREE--GVVPDKVAMVTVV 138
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
++LG + + Y+++ + + DV +GTA++DMY+KCGC+++A IF RM EKN
Sbjct: 139 FACAKLGAMHKARIIDDYIQRKKF--QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN 196
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W+AM HG+G +A+ L M G+ P+ +T SL AC ++ G L
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG-RLIH 255
Query: 345 NMKSKWGVEPHIKHYSC--IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++ K+G++ + H+ C +VD+ G+ +E+A +P + D + W ++
Sbjct: 256 HIVYKFGLD--LDHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 115/259 (44%), Gaps = 47/259 (18%)
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
N FR+++ G +P + T+ V+ L L+ G +H + K + + D F+
Sbjct: 12 INCFGTFRELIR--CGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK--FGLDLDHFV 67
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
ALVDMY KC +++A +F +M+E++++TWT M G A GK NE++ L + MR+ GV
Sbjct: 68 CAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGV 127
Query: 317 KPNAVTFTSLFAACCH-----------------------------------AGLVEEGLH 341
P+ V ++ AC G VE
Sbjct: 128 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 187
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSAC 398
+FD M+ E ++ +S ++ G G +A + ++ + PD I SLL AC
Sbjct: 188 IFDRME-----EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 242
Query: 399 NVHGDVALGEKVGKILLQL 417
+ ++ +G + I+ +
Sbjct: 243 SDLKNLQMGRLIHHIVYKF 261
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 214/391 (54%), Gaps = 37/391 (9%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ V L +C L LGR +H + G + + + L+ YA +
Sbjct: 367 DEVALVTVLSACVH---LEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEAL 423
Query: 165 KVFDQMPMRSSATWNAMINGYCSQS--KKAKD----------CAFNALV-------LFRD 205
+ F+Q+P +S+A+WN+M++G+C KA+D ++N +V LF +
Sbjct: 424 RTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNE 483
Query: 206 ML-----VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+ S VKP TT++ +LS +++G L G V+ Y+EK D +GTAL
Sbjct: 484 SFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGI--DAMLGTAL 541
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY KCGC++ A IF+++ EKNV WTAM A+ G+ EAI L M + GVKP+
Sbjct: 542 IDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDH 601
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF +L AAC H GLV+EG F+ ++S + + P I HY C+VDLLGR GHLEE FI
Sbjct: 602 VTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIE 661
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+PI+PD +W SL+ AC H +V L E+ K L+++ P + V LSNIY
Sbjct: 662 RMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPT--------NNGAHVLLSNIY 713
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A A RW DV VR ++ V +PG ++++
Sbjct: 714 ADAGRWDDVSKVRTKLHETGVPKQPGFTMIE 744
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 121/433 (27%), Positives = 199/433 (45%), Gaps = 58/433 (13%)
Query: 15 LKAITTPSHIKQIHAQLIT-NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
LK+ + IHA LIT N + P + +Q++ S + H + ++ P
Sbjct: 42 LKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFL----LSVNNLDCAHQILSYSHEPE 97
Query: 74 LFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++NTL+ + PQ+ + + + V++G+L D T+ F + +C C + LG
Sbjct: 98 SIIWNTLLENKLKEGCPQEVLECYYHMVTQGVL-LDISTFHFLIHAC---CKNFDVKLGS 153
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H + K GF N + L+ Y+ + ++F++M R +WN MI+ Y
Sbjct: 154 EVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYV--- 210
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
K AL LF +ML VSGV P + TMV ++S ++L LE G +H Y+
Sbjct: 211 --LKGMYREALDLFDEML--VSGVLPDEITMVSLVSTCAKLKDLEMGKRLH------LYI 260
Query: 250 PENDVFIGTA----LVDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNE 303
+N ++I + LVDMYSKCG +D A + SR E +V+ WT + +G K ++
Sbjct: 261 VDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDK 320
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A +L D M + + V++T++ + G E L LF M+ E I +V
Sbjct: 321 ARQLFDKMNE----RSLVSWTTMMSGYVQGGYYCESLELFQQMR----FENVIPDEVALV 372
Query: 364 DLLGRAGHLEE------AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
+L HLE+ + FI+ + D L +LL L K GK+ L
Sbjct: 373 TVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLD---------LYAKCGKLDEAL 423
Query: 418 QPEVTFVDVACTS 430
+ TF + C S
Sbjct: 424 R---TFEQLPCKS 433
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 195/449 (43%), Gaps = 94/449 (20%)
Query: 26 QIHAQLITNAL-KSPPLYAQLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
++H +++ ++ L L+ LY C K K V +F ++ +NT+I
Sbjct: 154 EVHGRILKCGFGRNKSLNNNLMGLYSKCGK------LKEVCQLFEKMTHRDVISWNTMIS 207
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK- 137
C ++++ +F + G+L D+ T V + +CA+ L L +G+++H+++
Sbjct: 208 CYVLKGMYREALDLFDEMLVSGVLP-DEITMVSLVSTCAK---LKDLEMGKRLHLYIVDN 263
Query: 138 ----RGFMFNVLVA----------------------------TTLIHFYASNKDISSGKK 165
RG + N LV TTL+ Y + I ++
Sbjct: 264 KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQ 323
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+M RS +W M++GY + +L LF+ M + V P + +V VLS
Sbjct: 324 LFDKMNERSLVSWTTMMSGYVQGGYYCE-----SLELFQQMRFE--NVIPDEVALVTVLS 376
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL---------- 275
L + G VH ++ Y D F+G AL+D+Y+KCG LD AL
Sbjct: 377 ACVHLEDFDLGRSVHAFI--VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSA 434
Query: 276 ---------------------IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
F+++ EK++++W M H NE+ + M+
Sbjct: 435 ASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSS 494
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLE 373
VKP+ T SL ++C G + G+ + + K++ G++ + + ++D+ G+ G +E
Sbjct: 495 NVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLG--TALIDMYGKCGCVE 552
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHG 402
AY I I+ + +W ++++A + G
Sbjct: 553 MAYEIFTQI-IEKNVFVWTAMMAAYAMEG 580
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 166/498 (33%), Positives = 257/498 (51%), Gaps = 67/498 (13%)
Query: 19 TTPSHIKQIHA-QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
+ P ++Q+HA L T P + ++L+ LY K + +F +L +
Sbjct: 27 SAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKIN--DLGYARSIFDRIQRRSLIHW 84
Query: 78 NTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+I+C D +++F V + L D+FT + CAR L + G+QIH
Sbjct: 85 NTIIKCYVENQFSHDGIVLFHELVHEYLP--DNFTLPCVIKGCAR---LGVVQEGKQIHG 139
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR-----------SSATWNAMI 182
K GF +V V +L++ Y+ +I +KVFD M + + +WNAMI
Sbjct: 140 LALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMI 199
Query: 183 NGYCSQSKKAKDCAFNALVLFRDM--------------------LVDVS---------GV 213
NGY K+ D +AL LF M +D G
Sbjct: 200 NGY----MKSGDFD-SALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGS 254
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+P+ T+V VLS S L +L G +H YMEK + E D +GT+L++MY+KCGC+++A
Sbjct: 255 RPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGF--ELDGILGTSLIEMYAKCGCIESA 312
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
L +F +++K V WTA+ G+ IHG N A+ L M G+KPNA+ F + AC HA
Sbjct: 313 LTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHA 372
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLV++G FD M +++ +EP ++HY C+VD+L RAGHLEEA N I +PI P+ ++W S
Sbjct: 373 GLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMS 432
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL HG + +GE + ++++ PE + C ++ LSN+YA++ W V VR
Sbjct: 433 LLGGSRNHGKIDIGEYAAQRVIEVAPET----IGC----YILLSNMYAASGMWEKVSHVR 484
Query: 454 KQMKVKRVETEPGSSILQ 471
+ M + +PG S ++
Sbjct: 485 EMMYKRGFRKDPGCSSVE 502
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 236/465 (50%), Gaps = 50/465 (10%)
Query: 23 HIKQIHAQLITN-ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++Q+HAQ+ TN A ++ + +L+ +Y + A + + LF+ +
Sbjct: 68 QVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQE---------------LFDGMS 112
Query: 82 RCTPPQDSVLVFAY----------WVSKGLLT----FDDFTYVFALGSCARFCSLSTLWL 127
+ P SV+V Y W+ + LL DD++ + +C L L
Sbjct: 113 KRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACR---DLKDLKC 169
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR IH K G + V TL+ YA K + ++F +M R ATW MI
Sbjct: 170 GRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAE 229
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+LV F M G+ P +V V+ ++LG + +H Y+ T
Sbjct: 230 SG-----VPVESLVFFDRM--RNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTG 282
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y DV +GTA++DMY+KCG +++A IF RM+ +NV+TW+AM HG+G +A+ L
Sbjct: 283 Y--SLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALEL 340
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M G+ PN +TF SL AC HAGL+EEG F +M ++GV P +KHY+C+VDLLG
Sbjct: 341 FPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLG 400
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+EA I G+P++ D +LW +LL AC +H + L E+V + LL+LQ +
Sbjct: 401 RAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQ------- 453
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V LSNIYA+A +W D+ R M + PG + ++
Sbjct: 454 -KPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEV 497
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 158/350 (45%), Gaps = 26/350 (7%)
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
+L +D + +L SC L+ RQ+H + G N+ VA L++ Y +
Sbjct: 48 VLHYDTKRFRSSLLSC------RNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGAL 101
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+++FD M R +W+ ++ GY F+ +FR++L SG D +
Sbjct: 102 EDAQELFDGMSKRHPYSWSVIVGGYAKVGN-----FFSCFWMFRELL--RSGAPLDDYSA 154
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V+ L L+ G +H K + F+ LVDMY++C +++A IF +M
Sbjct: 155 PVVIRACRDLKDLKCGRLIHCITLKCGL--DYGHFVCATLVDMYARCKVVEDAHQIFVKM 212
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--E 338
++++ TWT M +A G E++ D MR+ G+ P+ V ++ AC G + +
Sbjct: 213 WKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAK 272
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+H + N G + + ++D+ + G +E A + ++ + I W ++++A
Sbjct: 273 AIHAYINGT---GYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVR-NVITWSAMIAAY 328
Query: 399 NVHGDVALGEKVGKILLQ---LQPEVTFVDV--ACTSEDFVALSNIYASA 443
HG ++ ++L+ L +TFV + AC+ + + S+
Sbjct: 329 GYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSS 378
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 151/400 (37%), Positives = 219/400 (54%), Gaps = 53/400 (13%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS----- 156
L ++ V + +C R ++ W Q+H V K+GF + TT+IHFYA+
Sbjct: 529 LALNEILVVNLVSACGRLNAIGDGW---QLHGMVVKKGFDCYNFIQTTIIHFYAACGMMD 585
Query: 157 --------------------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
N+ + +K+FD MP R +W+ MI+GY +Q+
Sbjct: 586 LACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGY-AQTD 644
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+++ AL LF M+ SG+KP + TMV V S + LG L+ G H Y+ +P
Sbjct: 645 QSRI----ALELFHKMVA--SGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNE-SIP 697
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLL 308
ND + AL+DMY+KCG +++AL F+++R+K +V W A+ G+A HG + + +
Sbjct: 698 LND-NLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVF 756
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ +KPN +TF + +ACCHAGLVE G +F MKS + VEP IKHY C+VDLLGR
Sbjct: 757 SDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGR 816
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG LEEA I +P+K D ++W +LL+AC HGDV +GE+ + L L P
Sbjct: 817 AGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAESLAGLAPS-------- 868
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
V LSNIYA A RW DV VR+ ++ +R+E PG S
Sbjct: 869 HGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCS 908
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 103/434 (23%), Positives = 176/434 (40%), Gaps = 111/434 (25%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++++ VF S G++ +D T V + +C+ F + R IH K VLV
Sbjct: 383 REALEVFKDMRSDGVVP-NDLTLVNVIYACSHFGEILNC---RMIHAIAIKLFVEGLVLV 438
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-----------QSKKAKDC 195
+T L+ Y + +++FD+MP + +WN M+NGY + KD
Sbjct: 439 STNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDV 498
Query: 196 A---------------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
ALV++R ML SG+ + +V ++S +L + G +H
Sbjct: 499 ISWGTMIDGYILMNRLHEALVMYRAMLR--SGLALNEILVVNLVSACGRLNAIGDGWQLH 556
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLD-----------------NALL-------- 275
G + K + N FI T ++ Y+ CG +D NAL+
Sbjct: 557 GMVVKKGFDCYN--FIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRM 614
Query: 276 ------IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
IF M E++V +W+ M +G A + A+ L M G+KPN VT S+F+A
Sbjct: 615 VDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSA 674
Query: 330 CCHAGLVEEG-----------------------------------LHLFDNMKSK-WGVE 353
G ++EG L F+ ++ K + V
Sbjct: 675 IATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVS 734
Query: 354 PHIKHYSCIVDLLGRAGHLE---EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
P ++ I+ L GH + ++ + IKP+ I + +LSAC G V G ++
Sbjct: 735 P----WNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRI 790
Query: 411 GKIL---LQLQPEV 421
+I+ ++P++
Sbjct: 791 FRIMKSAYNVEPDI 804
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 117/287 (40%), Gaps = 59/287 (20%)
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
AL S ++CS S+ GRQ+H V K G N + +LI+ YA I + +FD
Sbjct: 273 LALVSALKYCSSSSQ--GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDAC 330
Query: 171 PMRSSATWNAMINGY--CSQSKKAK------------------------DCAFNALVLFR 204
P + + N M+ GY Q A+ +C AL +F+
Sbjct: 331 PTLNPISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFK 390
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---------------- 248
DM D GV P D T+V V+ S G + +H K F
Sbjct: 391 DMRSD--GVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCL 448
Query: 249 -------------MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
MPE ++ +++ Y+K G +D A +F R+ +K+V++W M G
Sbjct: 449 CSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGY 508
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+ + +EA+ + +M G+ N + +L +AC + +G L
Sbjct: 509 ILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQL 555
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
++ FI +L++MY+K G + +A L+F N ++ M G A G+ + A +L D M
Sbjct: 302 SNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIM 361
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
D G V++T++ E L +F +M+S GV P + +V+++ H
Sbjct: 362 PDKG----CVSYTTMIMGLVQNECFREALEVFKDMRSD-GVVP---NDLTLVNVIYACSH 413
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG--KILLQLQPEVTFV 424
E N M I + +L + N+ L VG + L PEV V
Sbjct: 414 FGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLV 468
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 230/419 (54%), Gaps = 34/419 (8%)
Query: 55 SPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALG 114
+P S+ + HF + N ++++L L A S D+ + A
Sbjct: 160 TPSSSPLWHFGYVR----NNLVYHSL---------ELFRAMIASDSASVVDEAAALVAFS 206
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPM 172
+ AR + + +H + K GF N V T++ YA ++D+ +KVFD M
Sbjct: 207 ASAR---VPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME- 262
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R +WN+MI Y A+ A+ L+ ML G+K + VL + G
Sbjct: 263 RDVVSWNSMIALYAQNGMSAE-----AIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGA 317
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
++ G +H + + E +V++GT++VDMYSKCG ++ A F +++EKN+L+W+AM
Sbjct: 318 IQTGKRIHNQVVRMGL--EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMI 375
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
TG +HG+G EA+ + M+ G++PN +TF S+ AAC HAGL++EG + ++ MK ++G+
Sbjct: 376 TGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGI 435
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
E ++HY C+VDLLGRAG L+EAY+ I + +KPDA +W +LLSAC +H +V L E K
Sbjct: 436 EAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVK 495
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L A S +V LSNIYA A W DVE +R +K +R+E PG S +
Sbjct: 496 RLFELD--------ASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFE 546
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 163/513 (31%), Positives = 254/513 (49%), Gaps = 79/513 (15%)
Query: 24 IKQIHAQLITNALKSP-PLYAQLIQLYCTK----KASPQSTKIVHFVFTHFDPPNLFLFN 78
+KQIHA +I N + L+ T A+P T H +F P+ F++N
Sbjct: 18 LKQIHALMIINGFNNNVNFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYN 77
Query: 79 TLIRCT---PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+IR + P + + + + D +T+ F L +C R ++T G +H V
Sbjct: 78 VMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNT---GSAVHGMV 134
Query: 136 TKRGFMFNVLVATTLIHF-------------------------------YASNKDISSGK 164
+ GF N +V TL+ F YA D+ +
Sbjct: 135 LRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVAR 194
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSK-----------KAKDC-AFNALV----------- 201
K+F++MP R +WN MI GY Q + KD ++NA++
Sbjct: 195 KLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQ 254
Query: 202 ---LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
LF +M +GV P + T++ +LS + LG LE G VH + + M + +G
Sbjct: 255 ALELFNEMCR--AGVFPDEVTLLSLLSACADLGDLENGKKVHAKVME-ISMGKLSTLLGN 311
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+DMY+KCG + +L +F + +K+V++W ++ GMA+HG G E++ L M+ + P
Sbjct: 312 ALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICP 371
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +TF + AC HAG ++EG FD M S++ +EP+I+H C+VD+LGRAG L+EA F
Sbjct: 372 NEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKF 431
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + I+P+AI+WR+LL+AC VHGDV L + + L ++ + S D+V +SN
Sbjct: 432 IDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKD--------HSGDYVLMSN 483
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+YAS W E VRK M V GSS ++
Sbjct: 484 LYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/413 (36%), Positives = 223/413 (53%), Gaps = 26/413 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L +N+L+ + +++V VF + D+ + V LG+C
Sbjct: 174 VFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGE-- 231
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LGR + V +RG N + + LI Y+ ++ S +++FD MP R TWNA
Sbjct: 232 -LGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
I+ Y A A+ LF M +GV P T+ VLS + +G L+ G +
Sbjct: 291 AISAYAQNG-----MADEAISLFHSM--KENGVDPNKVTLTAVLSACASIGALDLGKQMD 343
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y T ++D+F+ TAL+DMY+KCG L++A +F+ M KN +W AM + +A HGK
Sbjct: 344 EY--ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGK 401
Query: 301 GNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA+ L + M D G +PN +TF SL +AC HAGLV+EG LFD M + +G+ P I+H
Sbjct: 402 AKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEH 461
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VDLL RAGHL EA++ I +P KPD + +L SAC +V +GE+V ++LL+L
Sbjct: 462 YSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELD 521
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P S +++ S IY + W D +R M+ V PG S ++
Sbjct: 522 P--------SNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIE 566
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ND ++V MY +CG A +F + EK++++W ++ +G A G EA+ +
Sbjct: 149 DNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGR 208
Query: 311 MR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+R + G +P+ ++ S+ AC G +E G + + G++ + S ++ + +
Sbjct: 209 LREESGFEPDEMSLVSVLGACGELGDLELG-RWVEGFVVERGMKVNSYIGSALISMYSKC 267
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G L + G+P + D I W + +SA +G
Sbjct: 268 GELVSSRRIFDGMPSR-DFITWNAAISAYAQNG 299
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/401 (38%), Positives = 230/401 (57%), Gaps = 29/401 (7%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + ++ ++++ +F +S G++ D T V L + + L L GR +H ++
Sbjct: 295 LIDGFVQNGKHKEALTMFEEMLSDGVIP-DVITLVSVLST---YAQLGDLQQGRYLHNYI 350
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
++++ +LI+ YA D+++ + +F+ M R +W AM+ GY +
Sbjct: 351 KDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRT-- 408
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPENDV 254
AFN LF DM V V ++ +V +LS SQLG L+ G +H Y+ EK+ D+
Sbjct: 409 AFN---LFDDM--KVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSV---RTDM 460
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM--- 311
++ +ALVDMY+KCGC+D A IFSRMR K L W AM G+A G+G EA+ L + +
Sbjct: 461 WLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKL 520
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
RD KP+A+T + AC H G+V+EGLH F N+ G+ P +HY CIVDLLGRAG
Sbjct: 521 RD--PKPDAITLKVVLCACTHVGMVDEGLHYF-NLMLTLGIVPDNEHYGCIVDLLGRAGL 577
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L+EAYNFI +PI+P+ ++W SLL+AC VH + LG+ +G+ ++ L P DV
Sbjct: 578 LDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPN----DVGA--- 630
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
V +SN++A +W DVE VR M +RVE PG S +Q
Sbjct: 631 -HVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 18/342 (5%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L A + +++ ++H +L+ L S P A + S VF
Sbjct: 22 LAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKVFDRMAQ 81
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P ++N +IR C P D++ +F G+ + D++T S A F S
Sbjct: 82 PTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGV-SPDNYTMAAVAQSSAAFASWKGRAT 140
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY-- 185
G +H V + GF ++ V + LI+FY ++K + +KVF++M R +W MI+ +
Sbjct: 141 GDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQ 200
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
C Q N L +M + G KP T++ +LS Q+ ++ G V+ +++
Sbjct: 201 CGQWD-------NVLRSLDEMQSE--GTKPNKITIISLLSACGQVRAVDKGLWVYARVDE 251
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
Y E DV I AL+ MY KCGC+ +A F M +N +W + G +GK EA+
Sbjct: 252 --YGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEAL 309
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+ + M GV P+ +T S+ + G +++G +L + +K
Sbjct: 310 TMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIK 351
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 145/288 (50%), Gaps = 17/288 (5%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L +CA +L+ L GR + H+ + LV TL+ S D+ +KVFD+M
Sbjct: 25 LDACASRANLAELH-GRLVRAHLGSDPCVAGRLV--TLLASPVSRHDMPYARKVFDRMAQ 81
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
++ WN MI GY S +AL LFR M SGV P + TM V S+
Sbjct: 82 PTAIVWNCMIRGYNSCH-----APMDALELFRAM--RRSGVSPDNYTMAAVAQSSAAFAS 134
Query: 233 LE---FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
+ G VH +++ + +D+F+ + L++ Y +++A +F M E++V++WT
Sbjct: 135 WKGRATGDAVHALVQRIGF--ASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWT 192
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
M + A G+ + +R LD M+ G KPN +T SL +AC V++GL ++ + +
Sbjct: 193 LMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARV-DE 251
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+G+E + + ++ + + G + +A+ G+PI+ + W +L+
Sbjct: 252 YGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIR-NTKSWNTLIDG 298
>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 528
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/349 (40%), Positives = 207/349 (59%), Gaps = 18/349 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSATWNAMIN 183
L L R+ H V G +V+ LI YA D ++ ++ F +M P ++ +WN MI
Sbjct: 170 LGLARETHRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIA 229
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
C++S ++ AL FR+M SG V+P D T V VL + LG L+ G VH Y
Sbjct: 230 A-CARSGDTRE----ALSWFREM--QRSGCVRPDDATFVAVLGACADLGALDAGRWVHAY 282
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
M V +G AL+DMY+KCG +D A +F M ++V T+T+M +G+A+HG+G
Sbjct: 283 MMGRH---TKAVVVGNALLDMYAKCGAVDGAKEVFDAMPRRDVYTYTSMISGLAMHGRGQ 339
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EA+ LL MR GV+PNAVTF + +ACCHAGLVEEGL F+ + GV P I+HY C+
Sbjct: 340 EALALLADMRRAGVRPNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGIEHYGCV 399
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VD+LGRAG L+EA + +P +PDA++W SLLSAC HG VA E+V + + + ++
Sbjct: 400 VDMLGRAGRLDEAEELVARMPARPDALIWGSLLSACRAHGHVARAERVMRRMADVDGDLA 459
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V +SN+YAS R +RKQM+ R++ PG S+++
Sbjct: 460 ------DAGDYVLMSNMYASKGRHGKAVQLRKQMRRGRMDKVPGCSLIE 502
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 17/246 (6%)
Query: 73 NLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
N+ +NT+I R ++++ F G + DD T+V LG+CA L L G
Sbjct: 220 NVVSWNTMIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGACA---DLGALDAG 276
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R +H ++ R V+V L+ YA + K+VFD MP R T+ +MI+G
Sbjct: 277 RWVHAYMMGR-HTKAVVVGNALLDMYAKCGAVDGAKEVFDAMPRRDVYTYTSMISGLAMH 335
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ + AL L DM +GV+P T + VLS GL+E G + ++
Sbjct: 336 GRGQE-----ALALLADM--RRAGVRPNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLG 388
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRL 307
+ G +VDM + G LD A + +RM + + L W ++ + HG A R+
Sbjct: 389 VAPGIEHYGC-VVDMLGRAGRLDEAEELVARMPARPDALIWGSLLSACRAHGHVARAERV 447
Query: 308 LDSMRD 313
+ M D
Sbjct: 448 MRRMAD 453
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 249/486 (51%), Gaps = 55/486 (11%)
Query: 22 SHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+ +KQI A + N ++ + L L+Q+ S H +F P +FL+N L
Sbjct: 2 NRLKQIQAYTLRNGIEHTKQLIVSLLQI--------PSIPYAHKLFDFIPKPTVFLYNKL 53
Query: 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I+ P ++ +G + ++ ++ F +CA SLS+ GR +H H
Sbjct: 54 IQAYSSHGPHHQCFSLYTQMCLQGC-SPNEHSFTFLFSACA---SLSSHQQGRMLHTHFV 109
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ------ 188
K GF +V T L+ YA +S +K FD+M +R TWN+MI GY C
Sbjct: 110 KSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALE 169
Query: 189 -----------------SKKAKDCAF-NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
S A++ + AL +F M+ + + ++P + T+ VL + L
Sbjct: 170 LFRLMPARNVTSWTAMISGYAQNGQYAKALSMFL-MMEEETEMRPNEVTLASVLPACANL 228
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWT 289
G LE G + Y Y ++++ AL++MY++CG +D A +F + +N+ +W
Sbjct: 229 GALEVGERIEVYARGNGYF--KNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWN 286
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+M G+A+HG+ +EAI L M G P+ VTF + AC H G+V EG H F++M+
Sbjct: 287 SMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERD 346
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+ + P ++HY C+VDLLGRAG L EA++ I+ +P++PD+++W +LL AC+ HG V L EK
Sbjct: 347 FSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEK 406
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
L +L+P ++V LSNIYA+A RW V +RK MK ++ G S
Sbjct: 407 AAGALFELEPS--------NPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSF 458
Query: 470 LQTTTH 475
++ H
Sbjct: 459 IEEGGH 464
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 162/490 (33%), Positives = 248/490 (50%), Gaps = 51/490 (10%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
K P H++ IH I P A +L+++YC + K+ F PN+
Sbjct: 35 KNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKL----FRCTQNPNV 90
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+L+ +LI D++ +F V K +L D++ L +C +L + G++
Sbjct: 91 YLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLA-DNYAVTAMLKACVLQRALGS---GKE 146
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
+H V K G + +A L+ Y + +K+FD MP R MI C
Sbjct: 147 VHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGM 206
Query: 189 SKKA-----------------------KDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVL 224
++A ++ FN L +FR+M V GV+P + T VCVL
Sbjct: 207 VEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREM--QVKGVEPNEVTFVCVL 264
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG LE G +H YM K E + F+ AL++MYS+CG +D A +F +R K+
Sbjct: 265 SACAQLGALELGRWIHAYMRKCGV--EVNRFVAGALINMYSRCGDIDEAQALFDGVRVKD 322
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V T+ +M G+A+HGK EA+ L M V+PN +TF + AC H GLV+ G +F+
Sbjct: 323 VSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFE 382
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+ G+EP ++HY C+VD+LGR G LEEA++FI + ++ D + SLLSAC +H ++
Sbjct: 383 SMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNI 442
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GEKV K+L E +D S F+ LSN YAS RW VR++M+ + E
Sbjct: 443 GMGEKVAKLL----SEHYRID----SGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKE 494
Query: 465 PGSSILQTTT 474
PG S ++
Sbjct: 495 PGCSSIEVNN 504
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 252/476 (52%), Gaps = 48/476 (10%)
Query: 26 QIHAQLITNALKSPPLYAQL-IQLYCTKKASPQSTKIVH--FVFTHFDPPNLFLFNTLIR 82
QIHA ++ + L P Y L ++L+ +A KI H +F P+LFLF I
Sbjct: 47 QIHAAILRHNLLLHPRYPVLNLKLH---RAYASHGKIRHSLALFHQTIDPDLFLFTAAIN 103
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
T + + A+ + LL+ + F S + CS + G+ IH HV K G
Sbjct: 104 -TASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS---GKLIHTHVLKFGLGI 159
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDCAFN--- 198
+ VAT L+ YA D+ S +KVFD+MP RS + AMI Y Q +A F+
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC 219
Query: 199 ----------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
AL+LF+ +L + KP + T+V LS SQ+G LE G
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE-GKPKPDEITVVAALSACSQIGALETG 278
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H +++ + +V + T L+DMYSKCG L+ A+L+F+ K+++ W AM G A
Sbjct: 279 RWIHVFVKSSRI--RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYA 336
Query: 297 IHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG +A+RL + M+ G++P +TF AC HAGLV EG+ +F++M ++G++P
Sbjct: 337 MHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY C+V LLGRAG L+ AY I + + D++LW S+L +C +HGD LG+++ + L+
Sbjct: 397 IEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLI 456
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L + + + +V LSNIYAS + V VR MK K + EPG S ++
Sbjct: 457 GLNIKNSGI--------YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIE 504
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 204/343 (59%), Gaps = 18/343 (5%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+H + K GF N V T++ YA ++D+ +KVFD M R +WN+MI Y
Sbjct: 219 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 277
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
A+ A+ L+ ML G+K + VL + G ++ G +H + +
Sbjct: 278 GMSAE-----AIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGL 332
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E +V++GT++VDMYSKCG ++ A F +++EKN+L+W+AM TG +HG+G EA+ +
Sbjct: 333 --EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF 390
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ G++PN +TF S+ AAC HAGL++EG + ++ MK ++G+E ++HY C+VDLLGR
Sbjct: 391 TEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGR 450
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EAY+ I + +KPDA +W +LLSAC +H +V L E K L +L A
Sbjct: 451 AGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD--------AS 502
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V LSNIYA A W DVE +R +K +R+E PG S +
Sbjct: 503 NSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFE 545
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 149/313 (47%), Gaps = 26/313 (8%)
Query: 130 QIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
Q+H+ + G F + A+ L+H Y ++ FD++P + AM +GY
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ +++L LFR M+ S + + S S+++ A +H + K +
Sbjct: 174 -----NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 228
Query: 249 MPENDVFIGTALVDMYSKCGC--LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
E + + ++D Y+K G L+ A +F M E++V++W +M A +G EAI
Sbjct: 229 --ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIG 285
Query: 307 LLDSMRDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
L M + G+K NAV +++ AC HAG ++ G + N + G+E ++ + IVD
Sbjct: 286 LYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIH-NQVVRMGLEENVYVGTSIVD 344
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ-----LQP 419
+ + G +E A I K + + W ++++ +HG G++ +I + L+P
Sbjct: 345 MYSKCGRVEMASRAFRKIKEK-NILSWSAMITGYGMHGR---GQEALEIFTEMKRSGLRP 400
Query: 420 E-VTFVDV--ACT 429
+TF+ V AC+
Sbjct: 401 NYITFISVLAACS 413
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+CA ++ T G++IH V + G NV V T+++ Y+ + + F ++ ++
Sbjct: 310 ACAHAGAIQT---GKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 366
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+W+AMI GY + + AL +F +M SG++P T + VL+ S GLL+
Sbjct: 367 ILSWSAMITGYGMHGRGQE-----ALEIFTEM--KRSGLRPNYITFISVLAACSHAGLLD 419
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMAT 293
G + M++ F + E V +VD+ + GCLD A + M+ K + W A+ +
Sbjct: 420 EGRYWYNAMKQEFGI-EAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLS 478
Query: 294 GMAIH 298
IH
Sbjct: 479 ACRIH 483
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/413 (36%), Positives = 223/413 (53%), Gaps = 26/413 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L +N+L+ + +++V VF + D+ + V LG+C
Sbjct: 174 VFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGE-- 231
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LGR + V +RG N + + LI Y+ ++ S +++FD MP R TWNA
Sbjct: 232 -LGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
I+ Y A A+ LF M +GV P T+ VLS + +G L+ G +
Sbjct: 291 AISAYAQNG-----MADEAISLFHSM--KENGVDPNKVTLTAVLSACASIGALDLGKQMD 343
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y T ++D+F+ TAL+DMY+KCG L++A +F+ M KN +W AM + +A HGK
Sbjct: 344 EY--ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGK 401
Query: 301 GNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA+ L + M D G +PN +TF SL +AC HAGLV+EG LFD M + +G+ P I+H
Sbjct: 402 AKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEH 461
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VDLL RAGHL EA++ I +P KPD + +L SAC +V +GE+V ++LL+L
Sbjct: 462 YSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELD 521
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P S +++ S IY + W D +R M+ V PG S ++
Sbjct: 522 PS--------NSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIE 566
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ND ++V MY +CG A +F + EK++++W ++ +G A G EA+ +
Sbjct: 149 DNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGR 208
Query: 311 MR-DCGVKPNAVTFTSLFAACCHAGLVE-----EGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+R + G +P+ ++ S+ AC G +E EG + MK V +I S ++
Sbjct: 209 LREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMK----VNSYIG--SALIS 262
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + G L + G+P + D I W + +SA +G
Sbjct: 263 MYSKCGELVSSRRIFDGMPSR-DFITWNAAISAYAQNG 299
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 240/465 (51%), Gaps = 60/465 (12%)
Query: 42 YAQLIQLYCTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLIRC---------------TP 85
Y++LI+ C+ + + Q K VH +F P +F+ NTL+
Sbjct: 58 YSELIKC-CSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEM 116
Query: 86 PQDSVLVFAYWVSKGLLTFDD------------------FTYVFALGSCARFCSLSTLWL 127
P+ +V+ + +S +D FTY L +C +L
Sbjct: 117 PERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL----- 171
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
RQ+H + K G +V V + LI Y+ D+ + VFD+MP R WN++I G+
Sbjct: 172 -RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQ 230
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S + AL LF+ M +G T+ VL + L LLE G VH ++ K
Sbjct: 231 NSDGNE-----ALNLFKRM--KRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF- 282
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ D+ + AL+DMY KCG L++A FSRM EK+V++W+ M G+A +G +A+ L
Sbjct: 283 ---DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALEL 339
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+SM++ G +PN +T + AC HAGLVE+G + F +MK +GV+P +HY C++DLLG
Sbjct: 340 FESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLG 399
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+EA I + +PD++ WR+LL AC VH +V L K +++L+PE
Sbjct: 400 RAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPE------- 452
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+ ++ LSNIYA+ +RW DV VRK M + + PG S ++
Sbjct: 453 -DAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEV 496
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+ A+R +D+M GV +A+T++ L C G V+EG + +++ K G EP + +
Sbjct: 37 HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCK-GYEPKMFVVNT 95
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++++ + LEEA + +P + + + W +++SA
Sbjct: 96 LLNMYVKFNLLEEAEDLFDEMP-ERNVVSWTTMISA 130
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 245/478 (51%), Gaps = 27/478 (5%)
Query: 1 MLSLPGHRCFALLK-LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST 59
M+ L + A+L L+ + +K+I A +I N L++ P + I +C S S
Sbjct: 1 MMVLETSKANAILTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISG-SL 59
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+F H P +N++IR P ++ + + + D FT+ F L +
Sbjct: 60 PYAQHLFRHILNPQTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKA 119
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C R +L ++H + + G+ +V+V T L+ Y N + + VFD MP R
Sbjct: 120 CERIKALKKC---EEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDL 176
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WNAMI+ Y SQ+ ++ A R+ V V G T+V +LS S +G L
Sbjct: 177 VAWNAMISCY-SQAGYHQE-ALRVYDYMRNENVGVDGF-----TLVGLLSSCSHVGALNM 229
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +H + + +VF+G AL+DMY+KCG LD AL +F+ M ++ TW +M G
Sbjct: 230 GVKLHRIASEKGLL--RNVFVGNALIDMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGF 286
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG G+EAI + M + GV+PN++ F L C H GLVEEG+ F M SK+ V+P
Sbjct: 287 GVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPG 346
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
IKHY CIVD+ GRAG LE+A I P + D +LWR LLS+ +H +V +GE + L
Sbjct: 347 IKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLS 406
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
QL A + D V L+ IYA A V +RK +K + ++T PG S ++ +
Sbjct: 407 QLG--------AVNAGDCVLLATIYAGANDEQGVARMRKLIKKQGIKTTPGWSWIEVS 456
>gi|15239985|ref|NP_199192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75262420|sp|Q9FG85.1|PP415_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g43790
gi|10177948|dbj|BAB11307.1| unnamed protein product [Arabidopsis thaliana]
gi|332007627|gb|AED95010.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 460
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 250/482 (51%), Gaps = 46/482 (9%)
Query: 6 GHRCFALL-KLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIV 62
HRC L+ K K++ ++KQIHAQ+IT L + PL ++L+ L T S +
Sbjct: 9 NHRCLNLISKCKSL---QNLKQIHAQIITIGLSHHTYPL-SKLLHLSSTVCLSYALS--- 61
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSV----LVFAYW-----VSKGLLTFDDFTYVFAL 113
+ P++FL+NTLI + L F+ + + ++FTY
Sbjct: 62 --ILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTY---- 115
Query: 114 GSCARFCSLSTLWL--GRQIHVHVTK--RGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
S + W GR +H HV K + V L+ FYA+ + + +F++
Sbjct: 116 PSLFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFER 175
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+ ATWN ++ Y + + D L+LF M V+P + ++V ++ +
Sbjct: 176 IREPDLATWNTLLAAYANSEEIDSD--EEVLLLFMRM-----QVRPNELSLVALIKSCAN 228
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG G H Y+ K + F+GT+L+D+YSKCGCL A +F M +++V +
Sbjct: 229 LGEFVRGVWAHVYVLKNNLTL--NQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYN 286
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AM G+A+HG G E I L S+ G+ P++ TF +AC H+GLV+EGL +F++MK+
Sbjct: 287 AMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAV 346
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+EP ++HY C+VDLLGR+G LEEA I +P+KP+A LWRS L + HGD GE
Sbjct: 347 YGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGEI 406
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
K LL L+ E S ++V LSNIYA RW DVE R+ MK RV PG S
Sbjct: 407 ALKHLLGLEFE--------NSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGIST 458
Query: 470 LQ 471
L
Sbjct: 459 LN 460
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 159/458 (34%), Positives = 238/458 (51%), Gaps = 28/458 (6%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
I+ S +K+ HA++ L+ ++++ + S VF P FL+
Sbjct: 730 ISCFSCLKKTHAKIFAYGLQYD---SRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLW 786
Query: 78 NTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
N +IR S+ +++ + KGL D F + FAL SCA LS L G+ IH
Sbjct: 787 NVMIRGFATDGRFLSSLELYSKMMEKGLKP-DKFAFPFALKSCA---GLSDLQRGKVIHQ 842
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
H+ G ++ V L+ YA DI + + VFD+M +R +W +MI+GY ++
Sbjct: 843 HLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSE 902
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
F L+ SGV P +++ VL LG L G H Y+ +T + E D
Sbjct: 903 TLGFFDLM-------RSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGF--EFD 953
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+ + TA++DMYSKCG LD A +F K+++ W+AM IHG G +AI L D M
Sbjct: 954 ILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK 1013
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV+P+ VTFT + +AC H+GL+EEG F M ++ + + +Y+C+VDLLGRAG L
Sbjct: 1014 AGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLS 1073
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA + I +P++PDA +W SLL AC +H ++ L EK+ L L P +
Sbjct: 1074 EAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDP--------VHAGYH 1125
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYA+ RW +VE VRK M + G S+++
Sbjct: 1126 VLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVE 1163
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 248/470 (52%), Gaps = 37/470 (7%)
Query: 9 CFALLKLKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFT 67
C LL +KA + +H +I PL L+ LY A KI +F+
Sbjct: 216 CAQLLNVKAGSC------VHGLVIRREFDGDLPLVNSLLNLY----AKTGCEKIAANLFS 265
Query: 68 HFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
++ ++T+I C +++ +F + K + T V AL +CA +L
Sbjct: 266 KMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEP-NSVTVVSALQACAVSRNLE 324
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G++IH +GF + V+T LI Y +F ++P + +W A+++
Sbjct: 325 E---GKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLS 381
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY A+ ++ +FR+ML D G++P +V +L+ SS+LG+ + C+HGY+
Sbjct: 382 GYAQNGM-----AYKSMGVFRNMLSD--GIQPDAVAVVKILAASSELGIFQQALCLHGYV 434
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
++ + ++VF+G +L+++YSKCG L +A+ +F M ++V+ W++M IHG+G E
Sbjct: 435 VRSGF--NSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 492
Query: 304 AIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
A+ + D M ++ V+PN VTF S+ +AC HAGLVEEGL +FD M + + P +H+ +
Sbjct: 493 ALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIM 552
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGR G L +A + I +PI +W +LL AC +H ++ +GE K L L P
Sbjct: 553 VDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPS-- 610
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+ ++ LSNIYA +W +V +R ++K + ++ G S+++
Sbjct: 611 ------HAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEV 654
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 180/365 (49%), Gaps = 24/365 (6%)
Query: 43 AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVS 98
+ L++LY ++ K VF F P+ L+ +++ + P++++ +F+ V
Sbjct: 143 SALVELYSKCGQMGEALK----VFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198
Query: 99 KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158
+ D T V + +CA+ ++ G +H V +R F ++ + +L++ YA
Sbjct: 199 MDCVVLDPVTLVSVVSACAQLLNVKA---GSCVHGLVIRREFDGDLPLVNSLLNLYAKTG 255
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
+F +MP + +W+ MI Y + + A AL LF +M+ +P
Sbjct: 256 CEKIAANLFSKMPEKDVISWSTMIACYANN-----EAANEALNLFHEMI--EKRFEPNSV 308
Query: 219 TMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T+V L + LE G +H + K F E D + TAL+DMY KC C D A+ +F
Sbjct: 309 TVVSALQACAVSRNLEEGKKIHKIAVWKGF---ELDFSVSTALIDMYMKCSCPDEAVDLF 365
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
R+ +K+V++W A+ +G A +G +++ + +M G++P+AV + AA G+ +
Sbjct: 366 QRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQ 425
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ L L + + G ++ + +++L + G L +A G+ ++ D ++W S+++A
Sbjct: 426 QALCLHGYV-VRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAA 483
Query: 398 CNVHG 402
+HG
Sbjct: 484 YGIHG 488
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 17/280 (6%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
Q+H V K G + + AT L YA + + +KVFD+ P + WN+ + YC +
Sbjct: 22 QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + L LF +++ +G P + T+ L + L +LE G +HG+ +K +
Sbjct: 82 QWEE-----TLRLFH-LMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEI 135
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+D+F+G+ALV++YSKCG + AL +F + + + WT+M TG + EA+ L
Sbjct: 136 G-SDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFS 194
Query: 310 S--MRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDL 365
M DC V + VT S+ +AC V+ G +H + G P + + +++L
Sbjct: 195 QMVMMDC-VVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLV---NSLLNL 250
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
+ G + A N +P K D I W +++ AC + + A
Sbjct: 251 YAKTGCEKIAANLFSKMPEK-DVISWSTMI-ACYANNEAA 288
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/453 (33%), Positives = 242/453 (53%), Gaps = 31/453 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+++H++++ L+S L+ +Y A VF +L +NT+I
Sbjct: 181 RRVHSEVVVCGLESDIYVGNSLLAMY----AKFGDMGTARMVFDRMAERDLTSWNTMISG 236
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ + LVF GL D T + L +CA L + G+ IH + +
Sbjct: 237 YAKNADSGTAFLVFDLMGKAGLFA-DCTTLLGLLSACA---DLKAVKEGKVIHGYAVRNS 292
Query: 140 F-MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
+N +LI Y + + +++F+++ + + +WN+MI GY AF
Sbjct: 293 IGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGD-----AFE 347
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
+L LFR M +D SG P T + VL Q+ L +G +H Y+ K + + + +GT
Sbjct: 348 SLRLFRRMALDGSG--PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGF--DANTIVGT 403
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
ALVDMYSKCG L + +F M +K++++W+AM G +HG+G EAI +LD M+ V P
Sbjct: 404 ALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIP 463
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ FTS+ +AC HAGLV EG +F M+ ++ V+P + HYSC+VDLLGRAGHL+EAY
Sbjct: 464 DNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVI 523
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + IKP + +W +LL+A +H ++ L E + + + P+V ++ LSN
Sbjct: 524 IRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVV--------SSYICLSN 575
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
IYA+ +RW DVE VR ++ K ++ PG S ++
Sbjct: 576 IYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIE 608
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 189/404 (46%), Gaps = 29/404 (7%)
Query: 8 RCFALLKLKAITTPSHIKQ---IHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIV 62
+C ALL+ + T KQ +HA +I+ ++ Y +L Y Q+
Sbjct: 61 QCGALLQ--SFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQA---- 114
Query: 63 HFVFTHFDPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
+F N FL+N +IR P S++++ + G D+FTY F L +C
Sbjct: 115 EVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRA-DNFTYPFVLKACG- 172
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
L + +GR++H V G ++ V +L+ YA D+ + + VFD+M R +W
Sbjct: 173 --DLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSW 230
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N MI+GY + A ++F L+ +G+ TT++ +LS + L ++ G
Sbjct: 231 NTMISGYAKNADSG-----TAFLVFD--LMGKAGLFADCTTLLGLLSACADLKAVKEGKV 283
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+HGY + N F +L++MY C C+ +A +F R+R K+ ++W +M G A +
Sbjct: 284 IHGYAVRNSIGNYNKFFT-NSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARN 342
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G E++RL M G P+ VTF ++ AC + G+ + + K G + +
Sbjct: 343 GDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKK-GFDANTIV 401
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ +VD+ + G L + +P K + W ++++ +HG
Sbjct: 402 GTALVDMYSKCGSLACSRRVFDEMPDKS-LVSWSAMVAGYGLHG 444
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 157/485 (32%), Positives = 247/485 (50%), Gaps = 62/485 (12%)
Query: 23 HIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+KQIH + N + ++ L +L+++ + H V H P LFL+N LI
Sbjct: 3 QVKQIHGYTLRNGIDQTKILIEKLLEI--------PNLHYAHKVLHHSPKPTLFLYNKLI 54
Query: 82 RC--TPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ + PQ F+ + L +F + T+ F +C SLS+ LG+ +H H K
Sbjct: 55 QAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACT---SLSSPSLGQMLHTHFIK 111
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC----------- 186
GF ++ AT L+ Y + +K+FDQMP+R TWNAM+ G+
Sbjct: 112 SGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALEL 171
Query: 187 -------------------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
S+SKK + AL LF M + G+ P T+ +
Sbjct: 172 FRLMPSRNVVSWTTMISGYSRSKKYGE----ALGLFLRMEQE-KGMMPNAVTLASIFPAF 226
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVL 286
+ LG LE G V Y K + ++++ A+++MY+KCG +D A +F+ + +N+
Sbjct: 227 ANLGALEIGQRVEAYARKNGFF--KNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLC 284
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W +M G+A+HG+ + ++L D M G P+ VTF L AC H G+VE+G H+F +M
Sbjct: 285 SWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSM 344
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ + + P ++HY C+VDLLGRAG L EAY I +P+KPD+++W +LL AC+ H +V L
Sbjct: 345 TTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVEL 404
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
E + L L+P ++V LSNIYASA +W V +RK MK ++ G
Sbjct: 405 AEIAAESLFALEP--------WNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAG 456
Query: 467 SSILQ 471
S ++
Sbjct: 457 HSFIE 461
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/500 (32%), Positives = 247/500 (49%), Gaps = 86/500 (17%)
Query: 48 LYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR---------------------CTPP 86
+Y + A + H +F H P+ F++NT+IR C P
Sbjct: 17 IYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRP 76
Query: 87 QDSVLVFAY-------WVSKGL--------LTFDDFTYV-----FALGSCARFCSLSTLW 126
F WV G L F+ T+V + +C L+
Sbjct: 77 DKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALF 136
Query: 127 LG-----------------RQIHVHVTKRGF----MFNVLVATTLIHFYASNKDISSGKK 165
G R+ + V ++ F + +++ +I YA ++ S +K
Sbjct: 137 DGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARK 196
Query: 166 VFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+FD++P R TWNAMI GY C +++A L +F +M G P + TM+ +
Sbjct: 197 LFDEVPKRDVVTWNAMIAGYVLCGSNQQA-------LEMFEEM--RSVGELPDEVTMLSL 247
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS + LG L+ G +H + + + + V +G AL+DMY+KCG + AL +F MREK
Sbjct: 248 LSACTDLGDLDAGQRIHCCISEMGF-RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREK 306
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V TW ++ G+A HG ++I L MR ++P+ +TF + AC HAG VEEG F
Sbjct: 307 DVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYF 366
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D M+ ++ +EP+I+HY C+VDLLGRAG L EA++FI + I+P+AI+WR+LL AC +HG+
Sbjct: 367 DLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGN 426
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V LG + LL+++ + S D+V LSNIYAS W VE VRK M V
Sbjct: 427 VELGRRANMQLLKMRHD--------ESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRK 478
Query: 464 EPGSSILQTTT----HYTLD 479
E G S+++ H+ D
Sbjct: 479 EAGCSLIEGDNKALMHFLFD 498
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 162/490 (33%), Positives = 249/490 (50%), Gaps = 53/490 (10%)
Query: 6 GHRCFALLKLKAITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKI 61
H L L S +KQIHA + + L + LY++++ +S
Sbjct: 20 NHYNLLLQHLNECKDMSQLKQIHALSLRSTLPNHSTTLFLYSRILHF-----SSLHDLNY 74
Query: 62 VHFVFTHFDPPNLFLFNTLIR-CTPPQ------DSVLVFAYWVSKGLLTFDDFTYVFALG 114
+ VF D PN F++N LIR C Q +++L++ + + D+ T+ F L
Sbjct: 75 AYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFVLK 134
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+CA L L+ G+Q H H+ K GF +V + +LIHFYAS + S K VFD+MP RS
Sbjct: 135 ACAY---LFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRS 191
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDM--------LVDVSGVKPTDTTMVCVLSV 226
+WNAMI+ A VLF + +P T+ V++
Sbjct: 192 LVSWNAMID---------------AFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINA 236
Query: 227 SSQLGLLEFGACVHGYMEKT--FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L L G H ++ + + + V + +L+DMY KCG LD A IF M++ +
Sbjct: 237 CAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHD 296
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
V +W +M G A+HGKG A+ + M R PN++TF + +AC H +V EG F
Sbjct: 297 VTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYF 356
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL-SACNVHG 402
D M +++ +EP ++HY C+VD+L RAG ++EA + +P+KPD ++WRSLL S C +
Sbjct: 357 DMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNA 416
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
V L E + + +L+ + A +S +V LS +YASA RW DV VRK M +
Sbjct: 417 SVELSENIARQILESEE-------ADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGIL 469
Query: 463 TEPGSSILQT 472
EPG S+++
Sbjct: 470 KEPGCSLIEV 479
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 157/484 (32%), Positives = 248/484 (51%), Gaps = 48/484 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L + +H+ QIHA + + L Q++ + + AS +F+ PN+
Sbjct: 16 LHGHKSRTHLTQIHAHFLRHGLHQSN---QILAHFISVCASFNRIAYADRLFSQSHNPNI 72
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FLFN++I+ P S+L+F+ + ++ D +T+ L SCA C S LG+
Sbjct: 73 FLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVP-DQYTFAPLLKSCANLCEYS---LGQC 128
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS--- 187
+ V +RGF + ++ Y + + K+FD+M R WN MI G+C
Sbjct: 129 VISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGN 188
Query: 188 ---------QSKKAKDCAFN--------------ALVLFRDMLVDVSGVKPTDTTMVCVL 224
Q + ++N AL LF+ M + G KP + T+V +L
Sbjct: 189 VDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQM--EEHGFKPDEVTVVTML 246
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
V S+LG LE G +H Y + +G +L+D Y KCG ++ A IF +M K+
Sbjct: 247 PVCSRLGALEVGQRIHSYASSKGNLV-GITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKS 305
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W + G A++GKG AI L MR +KPN TF ++ AC H+GL+E+G LF
Sbjct: 306 VVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFS 365
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + ++P ++H+ C+VDLLGR G +EEA+ I +P++P+A LW ++L AC HG++
Sbjct: 366 SMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNL 425
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E K L+ L+P S ++V LSN+ A RW +VE+VR+ M+ K V+
Sbjct: 426 KLAEMAVKELISLEP--------WNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKA 477
Query: 465 PGSS 468
PG S
Sbjct: 478 PGQS 481
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 171/471 (36%), Positives = 249/471 (52%), Gaps = 38/471 (8%)
Query: 18 ITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
IT P +KQIHAQ + + P LY ++Q Y + P T VF HF PN
Sbjct: 33 ITMPQ-LKQIHAQTLRTVNSNHPNAIFLYTNILQHY-SSLTQPNLTYATR-VFHHFPNPN 89
Query: 74 LFLFNTLIRCTPPQDSV--LVFAYWVSKGLLTF-------DDFTYVFALGSCARFCSLST 124
F++NTLIR + A + K ++T D+ T+ L +CA SL
Sbjct: 90 SFMWNTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCE 149
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
G+Q+H HV K GF + + +L+HFYA+ + +K+F +M R+ +WN MI+
Sbjct: 150 ---GKQVHAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDS 206
Query: 185 YCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY- 242
Y AK F+ AL +F +M P TM V+S + LG L G VH Y
Sbjct: 207 Y------AKGGIFDTALRMFGEMQ---RVHDPDGYTMQSVISACAGLGALSLGLWVHAYI 257
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
++K +DV + T LVDMY K G L+ A +F M +++ W +M G+A+HG+
Sbjct: 258 LKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAK 317
Query: 303 EAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
A+ M + PN++TF + +AC H G+V+EG+ FD M ++ VEP ++HY C
Sbjct: 318 AALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGC 377
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA-CNVHGDVALGEKVGKILLQLQPE 420
+VDL RAG + EA N + + IKPDA++WRSLL A C + V L E++ K + + +
Sbjct: 378 LVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGS 437
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V C+S +V LS +YASA RW DV +RK M K V EPG SI++
Sbjct: 438 V------CSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIE 482
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 198/326 (60%), Gaps = 17/326 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
TLI YA ++ + +FD+MP R++ +W+AM+NGY Q+ ++ AL +F M
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV-QAGDGRE----ALRIFARM- 200
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
V+P DT +V VL+ +Q G LE G VHGY++ + + ++F GTALVDMYSKC
Sbjct: 201 -QAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKA--HGIKINLFFGTALVDMYSKC 257
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + A+ +F RM+ KNVL WT M G+A+HG+G+EA+ L M G++P+ + F +
Sbjct: 258 GEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVL 317
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC HAGLV++G LFD+M K+G++P I+HY C+VDLL R G L EA I +P++PD
Sbjct: 318 CACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPD 377
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W +L++ C H +V E V K + L+P+ S +V LSNIYA++ R
Sbjct: 378 ALIWGALMAGCRFHKNVEFAEYVAKHWILLEPD--------KSGAYVLLSNIYAASGRHA 429
Query: 448 DVESVRKQMKVKRVETEPGSSILQTT 473
+R M+ K V+ PG S ++
Sbjct: 430 SAREIRHLMREKGVDKTPGCSTVEVN 455
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ N ++ ++++ +FA ++ + DD V L +CA+ +L G+ +H ++
Sbjct: 180 MVNGYVQAGDGREALRIFARMQAEDVRP-DDTVLVGVLAACAQHGALEQ---GKWVHGYL 235
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
G N+ T L+ Y+ ++ VF++M ++ W MI G + ++
Sbjct: 236 KAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSE-- 293
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A++LF M + SG++P D + VL + GL++ G + M + + +
Sbjct: 294 ---AVMLFAQM--ESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEH 348
Query: 256 IGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
G +VD+ ++ G L A + +M E + L W A+ G H
Sbjct: 349 YGC-MVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFH 391
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 167/500 (33%), Positives = 258/500 (51%), Gaps = 59/500 (11%)
Query: 11 ALLKLKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
A+ L + TT I+QIHA+L + LK L Q ++ + + +
Sbjct: 17 AISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVK--AVALSDHTYLDYANQILDRS 74
Query: 70 DPPNLFLFNTLIRC---TP-PQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLST 124
D P LF N++IR +P P+ S ++ +S G L D++T F + +C L
Sbjct: 75 DKPTLFALNSMIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACT---GLGM 131
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------------------- 156
G Q+H +RGF + V T LI YA
Sbjct: 132 RETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTA 191
Query: 157 ---NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
D++ +K+F+ MP + WNAMI+GY +Q ++++ AL LF L+ + GV
Sbjct: 192 CARCGDVAFARKLFEGMPEKDPIAWNAMISGY-AQVGESRE----ALNLFH--LMQLEGV 244
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
K +M+ VLS +QLG L+ G H Y+E+ + V +GT LVD+Y+KCG +D A
Sbjct: 245 KVNGVSMISVLSACTQLGALDQGRWAHSYIERN--KIKITVRLGTTLVDLYAKCGDMDKA 302
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F M EKNV TW++ G+A++G G + ++L M+ GV PNAVTF S+ C
Sbjct: 303 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVV 362
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
G V+EG FD+M++++G+EP + HY C+VDL RAG LE+A + I +P+K A +W S
Sbjct: 363 GFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSS 422
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL A ++ ++ LG K +L+L+ +V LSNIYA ++ W +V VR
Sbjct: 423 LLHASRMYKNLELGVLASKKMLELE--------TSNHGAYVLLSNIYADSDDWDNVSHVR 474
Query: 454 KQMKVKRVETEPGSSILQTT 473
+ MK K V +PG S+++
Sbjct: 475 QSMKSKGVRKQPGCSVMEVN 494
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 183/341 (53%), Gaps = 17/341 (4%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH V K G + V V L++ Y D+ S K+F+ + +++ +WN MI +
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGL 718
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ A+ + + G+KP T + VL V +G++ +HG + F
Sbjct: 719 AEEGLAYFNMSRW-------VGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLI--MFCGF 769
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ I TAL+D+Y+K G L+++ +F + + + WTAM A HG G +AI+ +
Sbjct: 770 NANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFEL 829
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M G+ P+ VTFT L AC H+GLVEEG + F+ M ++ +EP + HYSC+VDL+GR+G
Sbjct: 830 MVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSG 889
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY I +P++P + +W +LL AC V+ D LG K K L +L+P
Sbjct: 890 LLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPR--------DG 941
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+++ LSNIY+++ W D +R MK K + G S ++
Sbjct: 942 RNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIE 982
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
VL R M +V G +P + T + ++S G E G C+HG + K+ + E V + AL
Sbjct: 622 VLSRMMRSEV-GFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEE--VKVVNAL 678
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+++Y K G L ++ +F + KN+++W M +G E + + R G+KP+
Sbjct: 679 MNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQ 738
Query: 321 VTFTSLFAACCHAGLVE--EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
TF ++ C G+V +G+H + G + + ++DL + G LE++
Sbjct: 739 ATFLAVLRVCEDIGVVRLSQGIH---GLIMFCGFNANTCITTALLDLYAKLGRLEDSSTV 795
Query: 379 IMGIPIKPDAILWRSLLSACNVHG 402
+ I PD++ W ++L+A HG
Sbjct: 796 FLEIT-SPDSMAWTAMLAAYATHG 818
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 123/298 (41%), Gaps = 34/298 (11%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVF--AYWVSKGLLTFDDFTYVFALGSCAR 118
+F NL +NT+I + ++ + F + WV L D T++ L C
Sbjct: 694 LFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVG---LKPDQATFLAVLRVCE- 749
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ + L + IH + GF N + T L+ YA + VF ++ S W
Sbjct: 750 --DIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAW 807
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
AM+ Y + +A+ F M+ G+ P T +L+ S GL+E G
Sbjct: 808 TAMLAAYATHGY-----GRDAIKHFELMV--HYGLSPDHVTFTHLLNACSHSGLVEEGRY 860
Query: 239 VHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMA 296
M K + + P D + + +VD+ + G L +A + M E + W A+
Sbjct: 861 YFETMSKRYRIEPRLDHY--SCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACR 918
Query: 297 IHGK---GNEAIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
++ G +A + L + RD N + +++++A +GL ++ + + MK K
Sbjct: 919 VYKDTQLGTKAAKRLFELEPRD---GRNYIMLSNIYSA---SGLWKDASRIRNLMKQK 970
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 240/445 (53%), Gaps = 46/445 (10%)
Query: 61 IVHFVFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
I VF L L+N ++RC + + + + + +T D T V A+ +C+
Sbjct: 102 IARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACS 161
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R LS LGR+IHV++ F FN+ VA L+ Y N + K+F+QMP R+ +
Sbjct: 162 RARDLS---LGRRIHVYMDNV-FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIIS 217
Query: 178 WNAMINGY--CSQSKKAK------------------------DCAFNALVLFRDMLVDVS 211
W +++GY Q KA+ C AL LFRDM +
Sbjct: 218 WTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDM--QMQ 275
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
V+P T+V +L+ + LG L+ G +H Y E+ + D +GTAL+DMYSKCG ++
Sbjct: 276 RVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKM--KIDAVLGTALIDMYSKCGHIE 333
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+L +F RM+ ++ WTA+ G+A +G+ A+ L M+ VKP+ VTF + +ACC
Sbjct: 334 KSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACC 393
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-L 390
H GLV+EG F M+ + +EP ++HYSC+V+LLGRAG L+EA I +PI DA+ L
Sbjct: 394 HGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDAMPL 453
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
+ +LL+AC HG+V + E++ K + + ++T V+ + +SN+YA+A RW DV
Sbjct: 454 FGALLTACKAHGNVEMSERLTKRICEQDSQITDVN--------LLMSNVYATASRWEDVI 505
Query: 451 SVRKQMKVKRVETEPGSSILQTTTH 475
VR +M V+ G S+++ +
Sbjct: 506 RVRGKMAHPTVKKTAGCSLIEVKGY 530
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 26/330 (7%)
Query: 74 LFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
L+ N LIR + S V+ Y + L D FTY F L + LS GR+
Sbjct: 14 LWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVG-VLKLSVE--GRK 70
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H K GF ++ ++L+ Y + +KVFD+MP R+ WN M+ Y +
Sbjct: 71 AHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGR 130
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
++A V + + + SGV P T+V ++ S+ L G +H YM+ F
Sbjct: 131 ------YSAAVALSEQM-ERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGF- 182
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
++ + AL+DMY+K CL+ A+ +F +M +N+++WT + +G + G+ ++A L +
Sbjct: 183 --NLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ 240
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLL 366
++ + + +T++ AC G EE L LF +M+ + VEP + +C + L
Sbjct: 241 CKE----KDLILWTAMINACVQHGCFEEALTLFRDMQMQ-RVEPDRFTVVTLLTCCAN-L 294
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
G E + + +K DA+L +L+
Sbjct: 295 GALDQGEWIHQYAEQRKMKIDAVLGTALID 324
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 40/184 (21%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D + G++L++MY+ G +D A +F M + ++ W M G+ + A+ L + M
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQME 142
Query: 313 DCGVKPNAVTFTSLFAACCHA----------------------------------GLVEE 338
GV P+ VT + AC A +EE
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEE 202
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ LF+ M ++ +I ++ +V G AG L++A + + D ILW ++++AC
Sbjct: 203 AVKLFEQMPAR-----NIISWTILVSGYGLAGQLDKA-RVLFNQCKEKDLILWTAMINAC 256
Query: 399 NVHG 402
HG
Sbjct: 257 VQHG 260
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 171/507 (33%), Positives = 252/507 (49%), Gaps = 71/507 (14%)
Query: 14 KLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYC-TKKASPQSTKIVHFVFTHFDPP 72
++ T + QIHA I + L A I +C T + H +F
Sbjct: 22 QINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 81
Query: 73 NLFLFNTLIRCTPPQD------SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
N F +NT+IR D ++ +F +S + + FT+ L +CA+ +
Sbjct: 82 NCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQ-- 139
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYA------------------------------- 155
G+QIH K GF + V + L+ Y
Sbjct: 140 -GKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRD 198
Query: 156 --------------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
D + + +FD+M RS +WN MI+GY SQ+ KD A+
Sbjct: 199 GEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY-SQNGFFKD----AVE 253
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
+FR+M ++P T+V VL S+LG LE G +H Y E + D +G+AL+
Sbjct: 254 VFREMKKG-EDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGI--RIDDVLGSALI 310
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMYSKCG ++ A+++F R+ +NV+TW+AM G AIHG+ +AI MR GV+P+ V
Sbjct: 311 DMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDV 370
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+ +L AC HAGLVEEG F M S G+EP I+HY C+VDLLGR G L+EA FI+
Sbjct: 371 AYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILN 430
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PIKPD ++W++LL AC +H +V +G++V IL+ + P S +VALSN+YA
Sbjct: 431 MPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPH--------DSGAYVALSNMYA 482
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSS 468
S W +V +R +MK + +PG S
Sbjct: 483 SQGNWSEVSEMRLRMKEMDIRKDPGCS 509
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 257/493 (52%), Gaps = 58/493 (11%)
Query: 26 QIHAQLITNALKS--PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
QI AQLITN S P L A + C A+ +++ F PN+F +N +I+
Sbjct: 29 QIQAQLITNPPLSLHPNLIAVKLIGACAANANLYHAQLI---FAQLPNPNVFSWNAIIKA 85
Query: 83 ---CTPPQDSVLVFAYWVS-KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
C + ++ F +S +++ Y + +CA L + G ++H V K
Sbjct: 86 HINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACA---GLEAIADGLKVHAVVIKS 142
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-----SQSKKAK 193
G N+ + T+L+ Y ++ +S +VFD+MP+R +WN M++GYC +++
Sbjct: 143 GLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVF 202
Query: 194 D-------CAFNALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
D ++NA++ +F +M V GV P D T+V VLS + +G
Sbjct: 203 DQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQ-KVGGVVPDDVTLVSVLSACAHVGA 261
Query: 233 LEFGACVH---GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L+FG + G+ + ++++G AL+DMY+KCG ++ A IF MRE++V++W+
Sbjct: 262 LDFGRWIDRFVGWRGRGL-----NLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWS 316
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
M G HG +EA M +CGVKPN VTF L +AC HAGLV++G+ LF M +
Sbjct: 317 TMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQE 376
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+ + P + HY C++DLL RAG L+EA + I +PI+P+ I+W +LL C +H D GE+
Sbjct: 377 YRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRRGER 436
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
V + LL+L E T +V ++ AS R D + +M+ K + +PG S
Sbjct: 437 VAQHLLELDSEYT--------GSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSK 488
Query: 470 LQTTTHYTLDGFR 482
++ H T+ F+
Sbjct: 489 IE--VHNTVHEFK 499
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/441 (34%), Positives = 233/441 (52%), Gaps = 50/441 (11%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR-- 118
VF ++ +N+LI +C +D + +F ++G+ D T + + +C R
Sbjct: 144 VFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKA-DKVTMIKVVSACTRLG 202
Query: 119 --------------FCSLSTLWLGRQIHVHVTKRGFM------------FNVLVATTLIH 152
+C ++LG + + +RG + N++ +I
Sbjct: 203 DYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIA 262
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
YA +DI S +K+FDQ+P + +W++MI+GY SQ+ D AL +FR M +
Sbjct: 263 AYAKGQDIVSARKIFDQIPKKDLISWSSMISGY-SQANHFSD----ALEIFRQM--QRAK 315
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
VKP + V+S + LG L+ G VH Y+ + + D + +L+DMY KCG
Sbjct: 316 VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNI--KADTIMENSLIDMYMKCGSAKE 373
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
AL +F M+EK+ L+W ++ G+A +G E++ L +M G +PN VTF + AC +
Sbjct: 374 ALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 433
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
A LVEEGL F++MK + +EP +KHY C+VDLLGRAG LE+A FI +PI PD ++WR
Sbjct: 434 AKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWR 493
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452
LL +CN HGDVA+ E V K L +L+P S ++ LSN YASA RW + +V
Sbjct: 494 ILLGSCNTHGDVAIAEIVTKKLNELEPS--------NSGNYTLLSNAYASAHRWSEAMNV 545
Query: 453 RKQMKVKRVETEPGSSILQTT 473
R+ M V PG S ++
Sbjct: 546 RQCMADTDVRKSPGCSAVEAA 566
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 113/411 (27%), Positives = 195/411 (47%), Gaps = 60/411 (14%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
IK++HA I + L + YA L P H VF + P FL+N LIR
Sbjct: 4 IKRLHAYYIVSGLYNCH-YAMSKVLRSYAILQPDLV-FAHKVFDQIEAPTTFLWNILIRG 61
Query: 84 TPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
D+ + F G + D+ T+ F L +CAR +L+ G Q+H H+TK G
Sbjct: 62 LAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNE---GEQMHNHITKLGL 118
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+ ++ V+ +LIH YA+ ++ + VFD+M ++ +WN++I GY SQ + KD L
Sbjct: 119 LSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY-SQCNRFKDI----L 173
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LF+ L+ GVK TM+ V+S ++LG + Y+E Y E DV++G L
Sbjct: 174 ALFK--LMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED--YCIEVDVYLGNTL 229
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLT-------------------------------WT 289
VD + + G L +A +F M+ +N++T W+
Sbjct: 230 VDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWS 289
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLF---D 344
+M +G + ++A+ + M+ VKP+A+ S+ ++C H G ++ G +H + +
Sbjct: 290 SMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRN 349
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
N+K+ +E + ++D+ + G +EA + K D + W S++
Sbjct: 350 NIKADTIME------NSLIDMYMKCGSAKEALQVFKEMKEK-DTLSWNSII 393
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 171/530 (32%), Positives = 259/530 (48%), Gaps = 100/530 (18%)
Query: 15 LKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ A T + QIHAQ+ + N + + QLI C+ K+ + I F FD PN
Sbjct: 47 IHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSI----FRCFDHPN 102
Query: 74 LFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF------DDFTYVFALGSCARFCSLSTLWL 127
LF+FN LIR F VS +L D T F L S A +L + L
Sbjct: 103 LFVFNALIRGLAENSR---FEGSVSHFVLMLRLSIRPDRLTLPFVLKSVA---ALVDVGL 156
Query: 128 GRQIH----------------------VHVTKRGF------------------MFNVLVA 147
GR +H V + + GF ++NVL+
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLIN 216
Query: 148 --------------------------TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
+LI+ + N D+ +++F QMP ++ +W M
Sbjct: 217 GCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTM 276
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
ING+ K AL +F ML + GV+P D T+V L +++G L+ G +H
Sbjct: 277 INGFSQNGDHEK-----ALSMFWRMLEE--GVRPNDLTVVSALLACTKIGALQVGERIHN 329
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y+ + IGTALVDMY+KCG + +A +F + K++LTW+ M G AIHG
Sbjct: 330 YLSSNGFQLNRG--IGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCF 387
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
++A++ M+ G+ P+ V F ++ AC H+G V++GL+ F++M+ + +EP +KHY+
Sbjct: 388 DQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTL 447
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
IVDLLGRAG L+EA +FI +PI PD ++W +L AC H ++ + E + LLQL+P+
Sbjct: 448 IVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPK- 506
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V LSN+YA+ RW DVE VR MK + VE +PG S ++
Sbjct: 507 -------HPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIE 549
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 244/453 (53%), Gaps = 31/453 (6%)
Query: 24 IKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
++Q HA L+ T +S L +L+ L C + + ++ F P+ FLFN+LI+
Sbjct: 26 LQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRL----FRSVSDPDSFLFNSLIK 81
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ D+V + + ++ +T+ + +CA LS L LG +H HV
Sbjct: 82 ASSNFGFSLDAVFFYRRMLHSRIVP-STYTFTSVIKACA---DLSLLRLGTIVHSHVFVS 137
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G+ N V L+ FYA + +KVFD+MP RS WN+MI+GY + A
Sbjct: 138 GYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGY-----EQNGLASE 192
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ +F M SG +P T V VLS SQLG L+ G +H + T +V + T
Sbjct: 193 AVEVFNKM--RESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGI--RMNVVLAT 248
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+LV+M+S+CG + A +F M E NV++WTAM +G +HG G EA+ + M+ CGV P
Sbjct: 249 SLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVP 308
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N VT+ ++ +AC HAGL+ EG +F +MK ++GV P ++H+ C+VD+ GR G L EAY F
Sbjct: 309 NRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQF 368
Query: 379 IMGIPIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
+ G+ + +W ++L AC +H + LG +V + L+ +PE +V LS
Sbjct: 369 VRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPE--------NPGHYVLLS 420
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
N+YA A R VESVR M + ++ + G S +
Sbjct: 421 NMYALAGRMDRVESVRNVMIQRGLKKQVGYSTI 453
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 167/523 (31%), Positives = 252/523 (48%), Gaps = 84/523 (16%)
Query: 15 LKAITTPSHIKQIHAQLIT-NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ A + ++QIH QL N S + Q I + +S S +F F+ N
Sbjct: 49 IHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFI----SSCSSLNSVDYAISIFQRFELKN 104
Query: 74 LFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+LFN LIR +S + F + K ++ D T+ F L S A +LS +GR
Sbjct: 105 SYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAA---ALSNGGVGRA 161
Query: 131 IHVHVTKRGFMFN-----------------------------------VLVATTLIHFYA 155
+H + K G F+ VL+ LIH Y
Sbjct: 162 LHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYC 221
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK--KAKDCAFN--------------- 198
D+ ++FD MP + + +WN++ING+ +AK+
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281
Query: 199 ---------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL F ML + G +P D T+V LS +++G L+ G +H Y+ +
Sbjct: 282 FSQNGDPEKALETFFCMLEE--GARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGF- 338
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ ++ IGTALVDMY+KCG +++A +F +EK +L W+ M G AIHG +A++ +
Sbjct: 339 -KLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFE 397
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M+ G KP++V F ++ AC H+G V EGL FDNM+ + +EP +KHY+ +VD+LGRA
Sbjct: 398 WMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRA 457
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G L+EA FI +PI PD ++W +L AC H +V + E K LLQL+P+
Sbjct: 458 GRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPK--------H 509
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V LSN YAS RW D E VR M+ +PG S ++
Sbjct: 510 PGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEV 552
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 240/445 (53%), Gaps = 46/445 (10%)
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPP---QDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
I VF L L+N ++RC + + + + + +T D T V A+ +C+
Sbjct: 102 IARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACS 161
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R LS LGR+IHV++ F FN+ VA L+ Y N + K+F+QMP R+ +
Sbjct: 162 RARDLS---LGRRIHVYMDNV-FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIIS 217
Query: 178 WNAMINGY--CSQSKKAK------------------------DCAFNALVLFRDMLVDVS 211
W +++GY Q KA+ C AL LFRDM +
Sbjct: 218 WTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDM--QMQ 275
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
V+P T+V +L+ + LG L+ G +H Y E+ + D +GTAL+DMYSKCG ++
Sbjct: 276 RVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKM--KIDAVLGTALIDMYSKCGHIE 333
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+L +F RM+ ++ WTA+ G+A +G+ A+ L M+ VKP+ VTF + +ACC
Sbjct: 334 KSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACC 393
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-L 390
H GLV+EG F M+ + +EP ++HYSC+V+LLGRAG L+EA I +PI DA+ L
Sbjct: 394 HGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLIGDVPINKDAMPL 453
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
+ +LL+AC HG+V + E++ K + + ++T V+ + +SN+YA+A RW DV
Sbjct: 454 FGALLTACKAHGNVEMSERLTKRICEQDSQITDVN--------LLMSNVYATASRWEDVI 505
Query: 451 SVRKQMKVKRVETEPGSSILQTTTH 475
VR +M V+ G S+++ +
Sbjct: 506 RVRGKMAHPTVKKNAGCSLIEVKGY 530
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 26/330 (7%)
Query: 74 LFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
L+ N LIR + S V+ Y + L D FTY F L + LS GR+
Sbjct: 14 LWECNVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVG-VLKLSVE--GRK 70
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H K GF ++ ++L+ Y + +KVFD+MP R+ WN M+ Y
Sbjct: 71 AHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIR--- 127
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
C + + + ++ SGV P T+V ++ S+ L G +H YM+ F
Sbjct: 128 ----CGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGF- 182
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
++ + AL+DMY+K CL+ A+ +F +M +N+++WT + +G + G+ ++A L +
Sbjct: 183 --NLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQ 240
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLL 366
++ + + +T++ AC G EE L LF +M+ + VEP + +C + L
Sbjct: 241 CKE----KDLILWTAMINACVQHGCFEEALTLFRDMQMQ-RVEPDRFTVVTLLTCCAN-L 294
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
G E + + +K DA+L +L+
Sbjct: 295 GALDQGEWIHQYAEQRKMKIDAVLGTALID 324
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D + G++L++MY+ G +D A +F M + ++ W M G + A+ L + M
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQME 142
Query: 313 DCGVKPNAVTFTSLFAACCHA----------------------------------GLVEE 338
GV P+ VT + AC A +EE
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEE 202
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ LF+ M ++ +I ++ +V G AG L++A + + D ILW ++++AC
Sbjct: 203 AVKLFEQMPAR-----NIISWTILVSGYGLAGQLDKA-RVLFNQCKEKDLILWTAMINAC 256
Query: 399 NVHG 402
HG
Sbjct: 257 VQHG 260
>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 222/388 (57%), Gaps = 19/388 (4%)
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN 143
+ P + ++ KGL D + F + R CSL G Q+H + G +
Sbjct: 3 SSPTEGFFMYQEMRKKGLRA-DPVSLSFVIRCYIRICSLIG---GEQVHARILSDGHQSD 58
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
L+ T L+ Y+ S KVFD+M R + WN +I+ Y ++++ +D LV+F
Sbjct: 59 SLLLTNLMDLYSLCDKGSEACKVFDEMRQRDTIAWNVLISCY-MRNRRTRD----VLVIF 113
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
ML G +P D T + +L + LG LEFG VHG++ + Y +N + +L+ M
Sbjct: 114 DGMLSGELGCEPDDVTCLLLLQACANLGALEFGEKVHGHIVERGY--DNATNLCNSLIAM 171
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
YS+ G LD A +F M KNV+TW+A+ +G+A++G G EAI + M GV P+ +TF
Sbjct: 172 YSQFGNLDKAFGVFKGMHNKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTF 231
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
T + +AC + GLV++G+ +F M ++G+ P+I HY C+VDLLGRAG L +AY IM +
Sbjct: 232 TGVLSACSNCGLVDKGMIIFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMR 291
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
+KPD+ +WR+LL AC +H +V LGE V + L++L+ + + D+V L N+Y+S
Sbjct: 292 VKPDSTIWRTLLGACRIHRNVILGEHVVEHLIELKAQ--------EAGDYVLLFNLYSSV 343
Query: 444 ERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ W V +RK MK K ++T P SS ++
Sbjct: 344 DNWKKVTELRKFMKEKGIQTTPASSSIE 371
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/398 (35%), Positives = 218/398 (54%), Gaps = 41/398 (10%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSG 163
+ T++ L +CA + S S++ G IH HV K G N V+V T LI YA + S
Sbjct: 90 NHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESA 149
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSK--------------------------KAKDCAF 197
+ FDQM +R+ +WN MI+GY K KD
Sbjct: 150 RLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHE 209
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFI 256
AL FR+M +SGV P T++ V++ + LG L G VH M + F N+V +
Sbjct: 210 EALECFREM--QLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDF---RNNVKV 264
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
+L+DMYS+CGC+D A +F RM ++ +++W ++ G A++G +EA+ +SM++ G
Sbjct: 265 SNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGF 324
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KP+ V++T AC HAGL+ EGL +F++MK + P I+HY C+VDL RAG LEEA
Sbjct: 325 KPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEAL 384
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
N + +P+KP+ ++ SLL+AC G++ L E V L++L + ++V L
Sbjct: 385 NVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELD--------SGGDSNYVLL 436
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
SNIYA+ +W VR++MK + ++ +PG S ++ +
Sbjct: 437 SNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDS 474
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 147/362 (40%), Gaps = 89/362 (24%)
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL---GLL 233
+W I YC K A + V R+ + ++P T + +LS + +
Sbjct: 58 SWTTSIADYCKSGHLVK--AASKFVQMRE-----AAIEPNHITFITLLSACAHYPSRSSI 110
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
FG +H ++ K + NDV +GTAL+DMY+KCG +++A L F +M +N+++W M
Sbjct: 111 SFGTAIHAHVRK-LGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMID 169
Query: 294 GMAIHGKGNEAIRLLD-------------------------------SMRDCGVKPNAVT 322
G +GK +A+++ D M+ GV P+ VT
Sbjct: 170 GYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVT 229
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
++ AAC + G + GL + + ++ ++K + ++D+ R G ++ A +
Sbjct: 230 VIAVIAACANLGTLGLGLWVHRLVMTQ-DFRNNVKVSNSLIDMYSRCGCIDLARQVFDRM 288
Query: 383 P----------------------------------IKPDAILWRSLLSACNVHGDVALGE 408
P KPD + + L AC+ G + G
Sbjct: 289 PQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGL 348
Query: 409 KV---GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
++ K + ++ P + E + L ++Y+ A R + +V K M +K E
Sbjct: 349 RIFEHMKRVRRILPRI---------EHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVIL 399
Query: 466 GS 467
GS
Sbjct: 400 GS 401
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 226/399 (56%), Gaps = 22/399 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L N +R +++ F S G+ D+ T V L + A L +W GR +H
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGV-EVDEVTIVSVLCAAAM---LRDVWFGRWVHGFY 230
Query: 136 TKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+ G +++V V + L+ Y+ KVF++MP R+ +W A+I GY Q + K+
Sbjct: 231 VESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYV-QCNRYKE 289
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
AL +F++M+++ G++P +T+ L+ +QLG L+ G +H Y++++ +
Sbjct: 290 ----ALKVFQEMIIE--GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSK- 342
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+GTALVDMYSKCGC+D ALL+F ++ K+V WTAM G+A+ G ++ L M
Sbjct: 343 -LGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRS 401
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
V+PN VTF + +AC H GLV+EGL LF M + +EP++ HY C+VDLLGRAG LEE
Sbjct: 402 RVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEE 461
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A FI +P++P +W +L S C +H LGE +G L++LQP S ++
Sbjct: 462 AIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPH--------HSGRYI 513
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
L+N+Y+ ++W +VR+ MK K V+ PG S ++
Sbjct: 514 LLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVN 552
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 212/429 (49%), Gaps = 39/429 (9%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T H+KQ + LIT+ L + I +++ + +F P +FL+NT
Sbjct: 20 TFDHLKQTTSILITSGLAHHTFFLSDIL-----RSATKDLGYTLLLFDRLATPYIFLWNT 74
Query: 80 LIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+IR + PQ ++ ++ + G++ D T+ L + ++ + + Q + H+
Sbjct: 75 IIRGFSASSQPQMVLVAYSRLRNHGVIP-DRHTFPLLLKAFSKLRNENPF----QFYAHI 129
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G F+ V +L+ +A + +++F + + +W A+ING C ++ +A +
Sbjct: 130 VKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING-CLRNGRAVE- 187
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN--- 252
AL F +M SGV+ + T+V VL ++ L + FG VHG FY+
Sbjct: 188 ---ALECFVEM--RSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHG-----FYVESGRVI 237
Query: 253 -DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV++G+ALVDMYSKCG D+A+ +F+ M +N+++W A+ G + EA+++ M
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEM 297
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAG 370
G++PN T TS AC G +++G L + + +SK G+ + + +VD+ + G
Sbjct: 298 IIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLG--TALVDMYSKCG 355
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV--ALGEKVGKILLQLQPE-VTFVDV- 426
++EA +P K D W ++++ + GD +L I ++QP VTF+ V
Sbjct: 356 CVDEALLVFEKLPAK-DVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVL 414
Query: 427 -ACTSEDFV 434
AC V
Sbjct: 415 SACAHGGLV 423
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 204/343 (59%), Gaps = 18/343 (5%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+H + K GF N V T++ YA ++D+ +KVFD M R +WN+MI Y
Sbjct: 74 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQN 132
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
A+ A+ L+ ML G+K + VL + G ++ G +H + +
Sbjct: 133 GMSAE-----AIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGL 187
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E +V++GT++VDMYSKCG ++ A F +++EKN+L+W+AM TG +HG+G EA+ +
Sbjct: 188 --EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF 245
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ G++PN +TF S+ AAC HAGL++EG + ++ MK ++G+E ++HY C+VDLLGR
Sbjct: 246 TEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGR 305
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EAY+ I + +KPDA +W +LLSAC +H +V L E K L +L A
Sbjct: 306 AGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD--------AS 357
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V LSNIYA A W DVE +R +K +R+E PG S +
Sbjct: 358 NSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFE 400
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+CA ++ T G+ IH V + G NV V T+++ Y+ + + F ++ ++
Sbjct: 165 ACAHAGAIQT---GKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 221
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+W+AMI GY + + AL +F +M SG++P T + VL+ S GLL+
Sbjct: 222 ILSWSAMITGYGMHGRGQE-----ALEIFTEM--KRSGLRPNYITFISVLAACSHAGLLD 274
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMAT 293
G + M++ F + G +VD+ + GCLD A + M+ K + W A+ +
Sbjct: 275 EGRYWYNAMKQEFGIEAGVEHYGC-MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLS 333
Query: 294 GMAIH 298
IH
Sbjct: 334 ACRIH 338
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 205/329 (62%), Gaps = 17/329 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N++ L+ +A ++++ +K+FD MP R +W +MI GY SQ+ + D A+ L
Sbjct: 282 NIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGY-SQASQFSD----AVKL 336
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F++M+ + VKP T+ VLS + LG L+ G VH Y+ + + + D+++G +L+D
Sbjct: 337 FQEMMA--AKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR--HGVQADIYVGNSLID 392
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG ++ AL +F RM++K+ ++WT++ +G+A++G N A+ L M GV+P T
Sbjct: 393 MYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGT 452
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + AC HAGLV +GL F++M+S G+ P +KHY C+VDLL R+G++++AY FI +
Sbjct: 453 FVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKM 512
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PI PD ++WR LLSAC +HG+V L E K LL+L P C S ++V LSN YA
Sbjct: 513 PIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDP--------CDSGNYVLLSNTYAG 564
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
+RW D +R+ M+ V+ GSS ++
Sbjct: 565 VDRWDDAMKMRELMEDSDVQKPSGSSSIE 593
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/414 (28%), Positives = 199/414 (48%), Gaps = 54/414 (13%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
K++HA LI L + P L + +I+ Y S + H VF + P L ++N +IR
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSL---SSTNLHKAHLVFNQIECPTLVVWNHMIRG 90
Query: 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P +++ ++ +G+ T ++ T +F +CAR + + GR+IHVH K G
Sbjct: 91 LSQSDHPVEAIHMYTRMHHQGI-TGNNLTLIFLFKACARVSDIVS---GRKIHVHALKLG 146
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F + V+ LIH YA + +K+FD M R +WN +I GY SQ K K+
Sbjct: 147 FESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGY-SQYNKYKEV---- 201
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L LF M + +K TMV ++ S LG EF + Y+++ E DV++G
Sbjct: 202 LRLFDAMT--AANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNL--EIDVYLGNT 257
Query: 260 LVDMYSKCGCLDNALLIFSRMREKN-------------------------------VLTW 288
L+DMY + + A +F RMRE+N V++W
Sbjct: 258 LIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISW 317
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T+M TG + + ++A++L M VKP+ VT S+ +AC H G ++ G + ++
Sbjct: 318 TSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIR- 376
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ GV+ I + ++D+ + G +E+A + K D++ W S++S V+G
Sbjct: 377 RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDK-DSVSWTSVISGLAVNG 429
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 244/461 (52%), Gaps = 40/461 (8%)
Query: 23 HIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++Q+HA LI T +S L +LI L C+ +A H +F P+ FLFN++I
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARA----IAYTHLLFLSVPLPDDFLFNSVI 79
Query: 82 RCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ T P V + +S + + ++T+ + SCA LS L +G+ +H H
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNV-SPSNYTFTSVIKSCA---DLSALRIGKGVHCHAVV 135
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + V L+ FY+ D+ ++VFD+MP +S WN++++G+ + D A
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGF--EQNGLADEAI 193
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN---DV 254
R+ SG +P T V +LS +Q G + G+ VH Y+ + E +V
Sbjct: 194 QVFYQMRE-----SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYI-----ISEGLDLNV 243
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD- 313
+GTAL+++YS+CG + A +F +M+E NV WTAM + HG G +A+ L + M D
Sbjct: 244 KLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDD 303
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
CG PN VTF ++ +AC HAGLVEEG ++ M + + P ++H+ C+VD+LGRAG L+
Sbjct: 304 CGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLD 363
Query: 374 EAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
EAY FI + A LW ++L AC +H + LG ++ K L+ L+P+
Sbjct: 364 EAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPD--------NP 415
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYA + + +V +R M + + G S+++
Sbjct: 416 GHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIE 456
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/398 (35%), Positives = 219/398 (55%), Gaps = 51/398 (12%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T + + SC++ L+ LG++ H ++ + G F + + L+ Y ++ + +
Sbjct: 258 NEITMIGMISSCSQVQDLN---LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTAR 314
Query: 165 KVFDQM-------------------------------PMRSSATWNAMINGYCSQSKKAK 193
+FD M P +S WNA+I+G C Q+K+ K
Sbjct: 315 VLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISG-CVQAKQGK 373
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
+ AL LF +M + ++P TMV LS SQLG L+ G +H Y+E+ + D
Sbjct: 374 E----ALALFHEM--QIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER--HKLSID 425
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V +GTALVDMY+KCG + AL +F + ++N LTWTA+ G+A+HG +A+ M
Sbjct: 426 VALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIH 485
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
G+ P+ +TF + +ACCH GLVEEG F M SK+ V P +KHYSC+VDLLGRAGHLE
Sbjct: 486 IGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLE 545
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA + +P+ DA + +L AC V+G+V +GE+ LL++ P+ S ++
Sbjct: 546 EAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQ--------DSGNY 597
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V L+++Y+ A+ W + S RK M K VE PG S+++
Sbjct: 598 VLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/479 (24%), Positives = 206/479 (43%), Gaps = 70/479 (14%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
RC +L++LK QI AQ+++ L A + +C S + ++
Sbjct: 65 ERCKSLVQLK---------QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY 115
Query: 67 THFDPPNLFLFNTLIRCTPPQDSV----LVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
N+F +N IR + +++ + G L D+ TY L C C
Sbjct: 116 -RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGC---CGQ 171
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
+ LG + HV K GF ++ V I S ++S VF++ +R TWN+MI
Sbjct: 172 YSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMI 231
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G C + + A A+ ++++M + V+P + TM+ ++S SQ+ L G H Y
Sbjct: 232 TG-CVK----RGLAIEAIKIYKEM--EAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCY 284
Query: 243 MEK---TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
+++ F +P + AL+DMY KCG L A ++F M +K +++WT M G A G
Sbjct: 285 IKEHGLEFTIP-----LTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFG 339
Query: 300 -------------------------------KGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+G EA+ L M+ ++P+ VT + +
Sbjct: 340 FLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLS 399
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC G ++ G+ + ++ + + + + +VD+ + G++ A IP + +
Sbjct: 400 ACSQLGALDVGIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNC 457
Query: 389 ILWRSLLSACNVHGDV--ALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIYAS 442
+ W +++ +HG+ AL I + + P E+TF+ V AC V Y S
Sbjct: 458 LTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFS 516
>gi|297791497|ref|XP_002863633.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309468|gb|EFH39892.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 460
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/483 (34%), Positives = 252/483 (52%), Gaps = 48/483 (9%)
Query: 6 GHRCFALL-KLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIV 62
HRC L+ K K++ ++KQIHAQ+IT L + PL ++L+ L T S +
Sbjct: 9 NHRCLNLIPKCKSL---QNLKQIHAQIITIGLSHHTYPL-SKLLHLSSTVCLSYALS--- 61
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSV----LVFAYW-----VSKGLLTFDDFTYVFAL 113
+ P++FL+NTLI + L F+ + + ++FTY
Sbjct: 62 --ILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTY---- 115
Query: 114 GSCARFCSLSTLWL--GRQIHVHVTK--RGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
S + T W GR +H HV K + V L+ FYA+ ++ + + ++
Sbjct: 116 PSLFKASGFETKWHRHGRALHAHVLKFIEPVNHDRFVQAALVGFYANCGELREARSLLER 175
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+ ATWN ++ Y + + D L LF M V+P + ++V ++ +
Sbjct: 176 IREPDLATWNTLLAAYANSEETESD--EEVLKLFVRM-----QVRPNELSLVALIKSCAN 228
Query: 230 LGLLEFGACVHGYM-EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
LG G H Y+ +K + + F+GT+L+D YSKCGCL A +F M E+++ +
Sbjct: 229 LGEFWGGVWAHVYLLKKNLTLNQ---FVGTSLIDFYSKCGCLSFARQVFDEMSERDISCF 285
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
AM G+A+HG G E I L +S+ G+ P+ TF +AC H+GLV+EGL +F +MK+
Sbjct: 286 NAMIRGLAVHGFGQEGIELYNSLISQGLVPDNATFVVTISACSHSGLVDEGLQIFHSMKT 345
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+G+EP ++HY C+VDLLGR+G LEEA I +P+KP+A LWRS L + +HGD+ GE
Sbjct: 346 VYGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPMKPNATLWRSFLGSAQIHGDLERGE 405
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
K LL L+ E S ++V LSNIYA RW DVE R+ MK RV PG S
Sbjct: 406 IALKQLLGLEFE--------NSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGIS 457
Query: 469 ILQ 471
+
Sbjct: 458 TIN 460
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/398 (35%), Positives = 219/398 (55%), Gaps = 51/398 (12%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T + + SC++ L+ LG++ H ++ + G F + + L+ Y ++ + +
Sbjct: 258 NEITMIGMISSCSQVQDLN---LGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTAR 314
Query: 165 KVFDQM-------------------------------PMRSSATWNAMINGYCSQSKKAK 193
+FD M P +S WNA+I+G C Q+K+ K
Sbjct: 315 VLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISG-CVQAKQGK 373
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
+ AL LF +M + ++P TMV LS SQLG L+ G +H Y+E+ + D
Sbjct: 374 E----ALALFHEM--QIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER--HKLSID 425
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V +GTALVDMY+KCG + AL +F + ++N LTWTA+ G+A+HG +A+ M
Sbjct: 426 VALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIH 485
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
G+ P+ +TF + +ACCH GLVEEG F M SK+ V P +KHYSC+VDLLGRAGHLE
Sbjct: 486 IGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLE 545
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA + +P+ DA + +L AC V+G+V +GE+ LL++ P+ S ++
Sbjct: 546 EAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQ--------DSGNY 597
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V L+++Y+ A+ W + S RK M K VE PG S+++
Sbjct: 598 VLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 116/479 (24%), Positives = 206/479 (43%), Gaps = 70/479 (14%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
RC +L++LK QI AQ+++ L A + +C S + ++
Sbjct: 65 ERCKSLVQLK---------QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILY 115
Query: 67 THFDPPNLFLFNTLIRCTPPQDSV----LVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
N+F +N IR + +++ + G L D+ TY L C C
Sbjct: 116 -RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGC---CGQ 171
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
+ LG + HV K GF ++ V I S ++S VF++ +R TWN+MI
Sbjct: 172 YSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMI 231
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G C + + A A+ ++++M + V+P + TM+ ++S SQ+ L G H Y
Sbjct: 232 TG-CVK----RGLAIEAIKIYKEM--EAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCY 284
Query: 243 MEK---TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
+++ F +P + AL+DMY KCG L A ++F M +K +++WT M G A G
Sbjct: 285 IKEHGLEFTIP-----LTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFG 339
Query: 300 -------------------------------KGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+G EA+ L M+ ++P+ VT + +
Sbjct: 340 FLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLS 399
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC G ++ G+ + ++ + + + + +VD+ + G++ A IP + +
Sbjct: 400 ACSQLGALDVGIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNC 457
Query: 389 ILWRSLLSACNVHGDV--ALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIYAS 442
+ W +++ +HG+ AL I + + P E+TF+ V AC V Y S
Sbjct: 458 LTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFS 516
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/483 (33%), Positives = 241/483 (49%), Gaps = 52/483 (10%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
IKQ+HA+LIT L P+ + + +P S H VF HF P+LFL+NT+I+
Sbjct: 16 QIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPIS--YAHMVFDHFPQPDLFLYNTIIK 73
Query: 83 C-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
T DS F + + L + +++ FA C S + G Q+ VH K
Sbjct: 74 VLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCG---SGVGVLEGEQVRVHAIK 130
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------- 190
G N+ V LI Y + + +KVFD P R +WN M++GY K
Sbjct: 131 LGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQL 190
Query: 191 ----KAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
KD AL +F +ML G+ P + T+ L+ + L
Sbjct: 191 FDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLA--KGMSPNEYTLASSLAACANLV 248
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS---RMREKNVLTW 288
L+ G +H Y++K + G L+DMY+KCG L+ A +F+ R++ K V W
Sbjct: 249 ALDQGRWMHVYIKKNNIQMNERLLAG--LIDMYAKCGELEFASKLFNSNPRLKRK-VWPW 305
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
AM G A+HGK EAI + + M+ V PN VTF +L AC H VEEG + F++M S
Sbjct: 306 NAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMAS 365
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ V+P ++HY C+VDLLGRAG L+EA I + + PD +W +LLSAC +H D +GE
Sbjct: 366 HYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGE 425
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+VGKI+ +L P + C V L+NIY+ W + ++R+++ + PG S
Sbjct: 426 RVGKIVKELDPN----HLGC----HVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCS 477
Query: 469 ILQ 471
++
Sbjct: 478 SIE 480
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 214/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D TYV L + L L LG+++H + K GF N++V+ TL+ YA ++
Sbjct: 415 DSVTYVMLLSMSTQ---LGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 471
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVF+ M R TWN +I C S+ DC ++ R + GV P TM+ +L
Sbjct: 472 KVFENMKARDIITWNTII-ASCVHSE---DCNLGLRMISR---MRTEGVTPDMATMLSIL 524
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
V S L G +HG + K E+DV +G L++MYSKCG L N+ +F M+ K+
Sbjct: 525 PVCSLLAAKRQGKEIHGCIFKLGL--ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKD 582
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWTA+ + ++G+G +A+R M G+ P+ V F ++ AC H+GLVEEGL+ F
Sbjct: 583 VVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFH 642
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MK + +EP I+HY+C+VDLL R+ L++A +FI+ +P+KPD+ +W +LLSAC + GD
Sbjct: 643 RMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDT 702
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ E+V + +++L P+ T +V +SNIYA+ +W V S+RK +K + ++ +
Sbjct: 703 EIAERVSERIIELNPDDTGY--------YVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 754
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 755 PGCSWME 761
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 197/417 (47%), Gaps = 26/417 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L + T + + ++H+ +IT L ++ A+LI Y + P S+ VF P N
Sbjct: 23 LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSS---FSVFRLASPSN 78
Query: 74 -LFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++L+N++IR L + L D +T+ + +CA L + +
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA---GLLDFEMAK 135
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH V GF ++ + LI Y D+ +KVF++MP+R +WN++I+GY +
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ A FR++ GV P TM VL LG +E G +HG +EK
Sbjct: 196 YWNE--ALEIYYRFRNL-----GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI- 247
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ DV + L+ MY K L + IF +M ++ ++W M G + G E+I+L
Sbjct: 248 -KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 306
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M + KP+ +T TS+ AC H G +E G ++ D M + G E + ++++ +
Sbjct: 307 EMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKC 364
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL-LQLQPE-VTFV 424
G+L + G+ K D++ W S+++ +G K+ K++ ++P+ VT+V
Sbjct: 365 GNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYV 420
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 145/283 (51%), Gaps = 14/283 (4%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L G+ +H ++ G+ + + LI+ YA ++ + ++VF M + S +WN+M
Sbjct: 329 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 388
Query: 182 INGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
IN Y ++ +F+ A+ LF+ M DV KP T V +LS+S+QLG L G +H
Sbjct: 389 INVYI------QNGSFDEAMKLFKMMKTDV---KPDSVTYVMLLSMSTQLGDLHLGKELH 439
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ K + +++ + LVDMY+KCG + ++L +F M+ ++++TW +
Sbjct: 440 CDLAKMGF--NSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSED 497
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
N +R++ MR GV P+ T S+ C +G + + K G+E + +
Sbjct: 498 CNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVPVGN 556
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++++ + G L ++ + K D + W +L+SAC ++G+
Sbjct: 557 VLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE 598
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 239/447 (53%), Gaps = 55/447 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSV---LVFAYWVSKGLLTFDDFTYVFALGSCA-RFC 120
+F + N F++NT++R +S L+ + K + D++TY + +CA R
Sbjct: 85 IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 144
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
G++IH HV K GF +V V TLI+ YA ++ +K+FD+ P+ S +WN+
Sbjct: 145 EFG----GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 200
Query: 181 MINGYCSQSKKAKDCA----FN-------------------------ALVLFRDMLVDVS 211
++ GY + + FN ALV+F +M + +
Sbjct: 201 ILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM--NAN 258
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV----DMYSKC 267
G++ + +V VLS + L +++ G +HG + + E+ V + AL+ DMY KC
Sbjct: 259 GMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI--ESYVNLQNALIHMYSDMYMKC 316
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
GC++NAL +F+ M EK V +W A+ G+A++G ++ + M++ GV PN +TF +
Sbjct: 317 GCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVL 376
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLV+EG F +M K G+EP++KHY C+VDLLGRAG L EA I +P+ PD
Sbjct: 377 GACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPD 436
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-VALSNIYASAERW 446
W +LL AC HGD +GE+VG+ L++LQP+ + F V LSNI+AS W
Sbjct: 437 VATWGALLGACKKHGDTEMGERVGRKLIELQPD---------HDGFHVLLSNIFASKGDW 487
Query: 447 PDVESVRKQMKVKRVETEPGSSILQTT 473
DV VR MK + V PG S+++
Sbjct: 488 EDVLEVRGMMKQQGVVKTPGCSLIEAN 514
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 140/305 (45%), Gaps = 53/305 (17%)
Query: 139 GFMFNVLVATTLIHFYASNK--DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
GF+ + A+ L+ F + + ++FD++ + WN M+ Y + K
Sbjct: 56 GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEK--- 112
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC-VHGYMEKTFYMPENDVF 255
AL+L++ M+ + V P + T V+ + + LLEFG +H ++ K + ++DV+
Sbjct: 113 --ALLLYKLMVKN--NVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKVGF--DSDVY 165
Query: 256 IGTALVDMYSKCG-------------CLD----NALL-----------------IFSRMR 281
+ L++MY+ CG LD N++L +F+ M
Sbjct: 166 VQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMD 225
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
EK++++W+A+ +G +G EA+ + M G++ + V S+ +AC H +V+ G
Sbjct: 226 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-K 284
Query: 342 LFDNMKSKWGVEPHIKHYSCIV----DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + + G+E ++ + ++ D+ + G +E A G+ K + W +L+
Sbjct: 285 MIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSS-WNALIIG 343
Query: 398 CNVHG 402
V+G
Sbjct: 344 LAVNG 348
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
LD +L IF R+ N W M +A+ L M V P+ T+ + A
Sbjct: 79 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C L+E G + K G + + + ++++ G++ +A P+ D++
Sbjct: 139 CA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV-LDSV 196
Query: 390 LWRSLLSACNVHGDVA 405
W S+L+ GD+
Sbjct: 197 SWNSILAGYVKKGDMG 212
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 225/428 (52%), Gaps = 50/428 (11%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L N + + ++ V+ S+G+ DD T + + SC+ L+ G++ + +V
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKP-DDVTMIGLVSSCSMLGDLNR---GKEFYEYV 283
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-------- 187
+ G + + L+ ++ DI +++FD + R+ +W MI+GY
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 188 ----------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
Q+K+ +D AL LF++M S KP + TM+ LS
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQD----ALALFQEM--QTSNTKPDEITMIHCLS 397
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
SQLG L+ G +H Y+EK Y +V +GT+LVDMY+KCG + AL +F ++ +N
Sbjct: 398 ACSQLGALDVGIWIHRYIEK--YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNS 455
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
LT+TA+ G+A+HG + AI + M D G+ P+ +TF L +ACCH G+++ G F
Sbjct: 456 LTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQ 515
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
MKS++ + P +KHYS +VDLLGRAG LEEA + +P++ DA +W +LL C +HG+V
Sbjct: 516 MKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVE 575
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
LGEK K LL+L P + + +V L +Y A W D + R+ M + VE P
Sbjct: 576 LGEKAAKKLLELDPSDSGI--------YVLLDGMYGEANMWEDAKRARRMMNERGVEKIP 627
Query: 466 GSSILQTT 473
G S ++
Sbjct: 628 GCSSIEVN 635
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 196/423 (46%), Gaps = 58/423 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS---PQSTKIVHFVFTHFDPPNLFLFNT 79
H+KQI AQ+I N L P + + +C S S KI+ + + PN+F +N
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGI----ENPNIFSWNV 123
Query: 80 LIR----CTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCA--RFCSLSTLWLGRQI 131
IR P++S L++ + G D FTY CA R SL + LG
Sbjct: 124 TIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG--- 180
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
HV K V IH +AS D+ + +KVFD+ P+R +WN +INGY KK
Sbjct: 181 --HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGY----KK 234
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME------- 244
+ A A+ +++ L++ GVKP D TM+ ++S S LG L G + Y++
Sbjct: 235 IGE-AEKAIYVYK--LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291
Query: 245 ---------------------KTFYMPENDVFIG-TALVDMYSKCGCLDNALLIFSRMRE 282
+ F E + T ++ Y++CG LD + +F M E
Sbjct: 292 IPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEE 351
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+V+ W AM G +G +A+ L M+ KP+ +T +AC G ++ G+ +
Sbjct: 352 KDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWI 411
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++ K+ + ++ + +VD+ + G++ EA + GI + +++ + +++ +HG
Sbjct: 412 HRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHG 469
Query: 403 DVA 405
D +
Sbjct: 470 DAS 472
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 156/509 (30%), Positives = 256/509 (50%), Gaps = 68/509 (13%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNAL-----KSPPLYAQLIQLYC----TKKASPQS--- 58
A+ ++ + + Q+HA IT L S L ++ + T ASP +
Sbjct: 18 AITVIRQCKSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAA 77
Query: 59 -TKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
T VF P+ F +NT+IR + P ++++F + + + D T+ F L
Sbjct: 78 LTGYALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVR-MRRLSVPPDTHTFPFCL 136
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK--------------- 158
+C+ +LS L + +H K GF ++ V TLIH Y+ NK
Sbjct: 137 KACSLLPALS---LAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLK 193
Query: 159 ----------------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
D +++FD+MP+R + +W ++ GY ++ D +A+ L
Sbjct: 194 DVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYA----QSGDLCMDAIQL 249
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F ML+ S V+P + +V LS +QLG LE G +H Y+++ +P N F+ T LVD
Sbjct: 250 FNRMLI--STVRPDNIALVSALSACAQLGELEQGKSIHVYIKQN-RIPIN-AFLSTGLVD 305
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
+Y+KCGC++ A IF +KN+ TW A+ G+ +HG+G+ ++ M + G+KP+ V+
Sbjct: 306 LYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVS 365
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + C HAGLV E + F M+ + V +KHY C+ DLLGRAG + EA I +
Sbjct: 366 FLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERM 425
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+ D +W +L C +HG+V + EK + ++ L PE V + +++IYA+
Sbjct: 426 PMGGDVFVWGGVLGGCRIHGNVEIAEKAAENVMALNPEDDGV--------YSIMADIYAN 477
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
A RW DV +R+ M ++V+ PG S++Q
Sbjct: 478 AGRWEDVARIRRLMHSRQVKKNPGCSLVQ 506
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 215/368 (58%), Gaps = 20/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ FT+ L +CA ++ L LG QIH HV K G +V V+ L+ YA + +
Sbjct: 137 NQFTFASVLQACA---TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 193
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++F + P R+ TWN +I G+ K AL LF +ML V+ T+ T L
Sbjct: 194 ELFAESPHRNDVTWNTVIVGHVQLGDGEK-----ALRLFLNMLE--YRVQATEVTYSSAL 246
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L LE G +H KT + + D+ + AL+DMY+KCG + +A L+F M +++
Sbjct: 247 RACASLAALEPGLQIHSLTVKTTF--DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQD 304
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W AM +G ++HG G EA+R+ D M++ VKP+ +TF + +AC +AGL+++G F
Sbjct: 305 EVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFT 364
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M G+EP I+HY+C+V LLGR GHL++A I IP +P ++WR+LL AC +H D+
Sbjct: 365 SMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDI 424
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG + +L+++P+ V LSN+YA+A+RW +V SVRK MK K V+ E
Sbjct: 425 ELGRISAQRVLEMEPQ--------DKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKE 476
Query: 465 PGSSILQT 472
PG S +++
Sbjct: 477 PGLSWIES 484
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 164/345 (47%), Gaps = 26/345 (7%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
F+ Y AL C + S G+ +H + KRG ++ L++ Y + +
Sbjct: 36 FNSHAYANALQDCIQKDEPSR---GKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
K+FD+MP R++ ++ +I GY + A+ LF + +V P T V
Sbjct: 93 SKLFDEMPERNTISFVTLIQGYAESVR-----FLEAIELFVRLHREVL---PNQFTFASV 144
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + + L G +H ++ K +DVF+ AL+D+Y+KCG ++N++ +F+ +
Sbjct: 145 LQACATMEGLNLGNQIHCHVIKIGL--HSDVFVSNALMDVYAKCGRMENSMELFAESPHR 202
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N +TW + G G G +A+RL +M + V+ VT++S AC +E GL +
Sbjct: 203 NDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIH 262
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++ K + I + ++D+ + G +++A + + K D + W +++S ++HG
Sbjct: 263 -SLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMHG- 319
Query: 404 VALGEKVGKILLQLQP------EVTFVDV--ACTSEDFVALSNIY 440
LG + +I ++Q ++TFV V AC + + Y
Sbjct: 320 --LGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAY 362
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 253/467 (54%), Gaps = 44/467 (9%)
Query: 25 KQIHAQLITNAL-KSPPLYAQ-LIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+Q+H I + L S P A L+ +Y C++ + F PN + +
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKA------FDEIPSPNPVIITAM 162
Query: 81 ----IRCTPPQDSVLVFAYWVSKGLLT-FDDFTYVFALGSCARF--CSLSTLWLGRQIHV 133
+R S+ +F ++ G T D+ + A + AR C +++ +H
Sbjct: 163 ASGYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITS-----SLHA 217
Query: 134 HVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
V K G + V T++ YA +D+ + +KVFD M + +WN+MI Y
Sbjct: 218 LVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMS 276
Query: 192 AKDCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
A +AL L+R ML +VSG +K T+ +L + G ++ G C+H + +
Sbjct: 277 A-----DALGLYRKML-NVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGL-- 328
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E +V++GT++VDMYSKCG ++ A F +++EKN+L+W+AM TG +HG G EA+ + +
Sbjct: 329 EENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNE 388
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M G PN +TF S+ AAC HAGL+++G + ++ MK ++G+EP ++HY C+VDLLGRAG
Sbjct: 389 MCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAG 448
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L+EAY I + +KPDA +W +LLSAC +H +V L E K L +L A
Sbjct: 449 CLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELD--------ATNC 500
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG-SSI-LQTTTH 475
+V LSNIYA A W DVE +R +K + +E PG SS+ L+ TH
Sbjct: 501 GYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTH 547
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 225/411 (54%), Gaps = 34/411 (8%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L N + + ++ V+ S+G+ DD T + + SCA L+ G++ + +V
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKP-DDVTMIGLVSSCAMLGDLNR---GKEFYEYV 208
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT-------------WNAMI 182
G + +A L+ ++ DI +++FD + R+ + WNAMI
Sbjct: 209 KANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMI 268
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G Q+K+++D AL LF++M S P + TM+ LS SQLG L+ G +H Y
Sbjct: 269 GGSV-QAKRSQD----ALALFQEM--QTSNTDPDEITMIHCLSACSQLGALDVGIWIHRY 321
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+EK + +V +GT+LVDMY+KCG + AL +F ++ +N LT+TA+ G+A+HG +
Sbjct: 322 IEK--HSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDAS 379
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
AI + M D G+ P+ +TF L +ACCH G+++ G F MKS++ + P +KHYS +
Sbjct: 380 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 439
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLLGRAG LEEA + +P++ DA +W +LL C +HG+V LGEK K LL+L P +
Sbjct: 440 VDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDS 499
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+ +V L +Y A W D + R+ M + VE PG S ++
Sbjct: 500 GI--------YVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 542
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 167/362 (46%), Gaps = 37/362 (10%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCA- 117
+ + PN F +N IR P+D+VL + + +G D FTY CA
Sbjct: 34 ILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCAD 93
Query: 118 -RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
R SL + LG HV K V IH +AS ++ + +KVFD+ P+R
Sbjct: 94 LRLNSLGHMILG-----HVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLV 148
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+WN +INGY + K A+ +++ M + GVKP D TM+ ++S + LG L G
Sbjct: 149 SWNCLINGYKKIGEGEK-----AIEVYKVM--ESEGVKPDDVTMIGLVSSCAMLGDLNRG 201
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR-------------MREK 283
+ Y++ + + AL+DM+SKCG + A IF M EK
Sbjct: 202 KEFYEYVKANGL--RMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEK 259
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+ W AM G + +A+ L M+ P+ +T +AC G ++ G+ +
Sbjct: 260 DVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIH 319
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++ K + ++ + +VD+ + G++ EA GI + +++ + +++ +HGD
Sbjct: 320 RYIE-KHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTR-NSLTYTAIIGGLALHGD 377
Query: 404 VA 405
+
Sbjct: 378 AS 379
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 11/240 (4%)
Query: 139 GFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
G + + ++ LI F A ++ ++ K+ + ++ +WN I G+ S+S+ KD
Sbjct: 5 GLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGF-SESENPKD-- 61
Query: 197 FNALVLFRDMLV-DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A++ ++ ML +P T + V + L L G + G++ K E
Sbjct: 62 --AVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRL--ELVSH 117
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ A + M++ CG ++NA +F +++++W + G G+G +AI + M G
Sbjct: 118 VHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEG 177
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
VKP+ VT L ++C G + G ++ +K+ G+ I + ++D+ + G + EA
Sbjct: 178 VKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKAN-GLRMTIPLANALMDMFSKCGDIHEA 236
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 156/474 (32%), Positives = 251/474 (52%), Gaps = 32/474 (6%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKI 61
+P F L K+ S KQIH S YAQ L+ +Y + K
Sbjct: 85 IPDRYTFPSL-FKSCRNSSEGKQIHCHSTKLGFASDT-YAQNTLMNMYSNCGCLVSARK- 141
Query: 62 VHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
VF + + + T+I + P ++V +F + + ++ T V L +CA
Sbjct: 142 ---VFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA 198
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R L+ + ++IH ++ + GF +V++ T L+ Y + + +FD+ ++ +
Sbjct: 199 RARDLAMV---KRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFS 255
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN MING+ S + AL+LFR+M G+K TM +L + LG LE G
Sbjct: 256 WNIMINGHVEDSNYEE-----ALLLFREM--QTKGIKGDKVTMASLLLACTHLGALELGK 308
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+H Y++K + DV +GTALVDMY+KCG ++ A+ +F M EK+V+TWTA+ G+A+
Sbjct: 309 WLHAYIKKQRI--DVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAM 366
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
G+ A++ D M GVKP+A+TF + AAC HAG V+EG+ F++M +G++P I+
Sbjct: 367 CGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIE 426
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY +VD+LGRAG + EA I +P+ PD + LL AC +HG++ E+ K LL++
Sbjct: 427 HYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEI 486
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P S +V LSNIY S+++W + + R+ M + + PG S ++
Sbjct: 487 DP--------YHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIE 532
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 203/423 (47%), Gaps = 29/423 (6%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
S +KQIHAQ++ L P A I +C+ + S S + VF+ P + N++I
Sbjct: 2 SQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESG-SLQYARLVFSQIPNPTSYTCNSII 60
Query: 82 R-CTPP---QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R CT Q+++L + + +GL+ D +T+ SC G+QIH H TK
Sbjct: 61 RGCTDKNLHQEALLFYQEMMVQGLIP-DRYTFPSLFKSCRNSSE------GKQIHCHSTK 113
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + TL++ Y++ + S +KVFD+M ++ +W MI + +
Sbjct: 114 LGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQP------ 167
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
N V D ++ VKP + T+V VL+ ++ L +H Y+++ + V +
Sbjct: 168 NEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGF--GRHVVLN 225
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T L+D+Y KCGC+ A +F + +EKN+ +W M G EA+ L M+ G+K
Sbjct: 226 TVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIK 285
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
+ VT SL AC H G +E G L +K K ++ + + +VD+ + G +E A
Sbjct: 286 GDKVTMASLLLACTHLGALELGKWLHAYIK-KQRIDVDVALGTALVDMYAKCGSIETAIQ 344
Query: 378 FIMGIPIKPDAILWRSL---LSACNVHGDVALGEKVGKILLQLQPE-VTFVDV--ACTSE 431
+P K D + W +L L+ C + AL + ++P+ +TFV V AC+
Sbjct: 345 VFHEMPEK-DVMTWTALILGLAMCG-QAENALQYFDEMHIKGVKPDAITFVGVLAACSHA 402
Query: 432 DFV 434
FV
Sbjct: 403 GFV 405
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 210/370 (56%), Gaps = 21/370 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT L +CA SL G+ +H ++ + N+ V L+ YA +
Sbjct: 98 DIFTITTVLHACACNGSLEN---GKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDAN 154
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF +MP++ +WN MI GY S + AL LF DM++++ KP TT+ C+L
Sbjct: 155 SVFLEMPVKDIISWNTMIGGYSKNSLPNE-----ALSLFGDMVLEM---KPDGTTLACIL 206
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L L+ G VHG++ + + + V ALVDMY KCG A L+F + K+
Sbjct: 207 PACASLASLDRGKEVHGHILRNGFFSDQQV--ANALVDMYVKCGVPVLARLLFDMIPTKD 264
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++TWT M G +HG GN AI + MR G++P+ V+F S+ AC H+GL++EG F+
Sbjct: 265 LITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFN 324
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ + V+P ++HY+CIVDLL R+G L AY FI +PI+PDA +W +LLS C +H DV
Sbjct: 325 VMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDV 384
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L EKV + + +L+PE T +V L+N YA AE+W +V+ +R+++ + ++
Sbjct: 385 KLAEKVAEHVFELEPENTGY--------YVLLANTYAEAEKWEEVKKLRQKIGRRGLKKN 436
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 437 PGCSWIEVKS 446
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 15/293 (5%)
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
V L +CA +S LGR +H K + TL+ YA + VFD
Sbjct: 2 VSILQACANCGDVS---LGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDL 58
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
M +R+ TW ++I Y + + A+ LF +M D GV P T+ VL +
Sbjct: 59 MSVRTVVTWTSLIAAYAREGLSDE-----AIRLFHEM--DREGVSPDIFTITTVLHACAC 111
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
G LE G VH Y+ + ++++F+ AL+DMY+KCG +++A +F M K++++W
Sbjct: 112 NGSLENGKDVHNYIRENDM--QSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWN 169
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
M G + + NEA+ L M +KP+ T + AC ++ G + ++
Sbjct: 170 TMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRN 228
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G + + +VD+ + G A IP K D I W +++ +HG
Sbjct: 229 -GFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMHG 279
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV +L + G + G VHG K + F T L+DMY+KCG LD A+L+F
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKT-TFCNT-LLDMYAKCGVLDGAILVFDL 58
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M + V+TWT++ A G +EAIRL M GV P+ T T++ AC G +E G
Sbjct: 59 MSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENG 118
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--A 397
+ + ++ ++ +I + ++D+ + G +E+A + + +P+K D I W +++ +
Sbjct: 119 KDVHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGGYS 176
Query: 398 CNVHGDVALGEKVGKILLQLQPEVT 422
N + AL G ++L+++P+ T
Sbjct: 177 KNSLPNEAL-SLFGDMVLEMKPDGT 200
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 226/429 (52%), Gaps = 56/429 (13%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+ N +RC ++ F + G L D+ T + + + A+ L L LGR++H
Sbjct: 227 IINGYVRCGLADEA---FDLYYKMGELNVMPDEVTMIGVVSASAQ---LENLALGRKLHQ 280
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGK----------------------------- 164
+ + G V +A L+ Y K+I + K
Sbjct: 281 SIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLES 340
Query: 165 --KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
++F++MP + WNA+I G+ Q+K++K+ AL LF +M S V P T+V
Sbjct: 341 AVRLFNEMPEKDVVLWNALIGGFV-QAKRSKE----ALALFHEM--QASSVAPDKITVVN 393
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
LS SQLG L+ G +H Y++K + +V +GTALVDMY+KCG + A+ +F M
Sbjct: 394 CLSACSQLGALDVGIWMHHYVDK--HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+N LTWTA+ G+A+HG+ + AI M G+ P+ +TF + +ACCH GLV++G
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDY 511
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F M SK+G+ P +KHYSC+VDLLGRAG LEEA I +P +PDA++W +L +HG
Sbjct: 512 FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+V +GE+ LL+L P + +V L+N+Y A W VRK M+ + VE
Sbjct: 572 NVHMGERAASKLLELDPHDGGI--------YVLLANMYGDANMWEQARKVRKMMEERGVE 623
Query: 463 TEPGSSILQ 471
PG S ++
Sbjct: 624 KTPGCSSIE 632
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 65/456 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+A T+ + +K+IHAQ+I+ L S + +C + ++ + + N+
Sbjct: 61 LEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAI-SEWRNLDYCDKILNNAANLNV 119
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +N IR P ++VL++ + KG D++TY CA F SLS W +
Sbjct: 120 FSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF-SLS--WTANE 176
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
I HV + GF ++ V +IH S ++ + +K+FD+ +R +WN++INGY C
Sbjct: 177 ILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGL 236
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ +A D + L V P + TM+ V+S S+QL L G +H +E+
Sbjct: 237 ADEAFDLYYKMGEL---------NVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE--- 284
Query: 249 MPEN-DVFIGTALVDMYSKC-------------------------------GCLDNALLI 276
M N V + AL+DMY KC G L++A+ +
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F+ M EK+V+ W A+ G + EA+ L M+ V P+ +T + +AC G +
Sbjct: 345 FNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404
Query: 337 EEGL---HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
+ G+ H D K + ++ + +VD+ + G++++A +P + +++ W +
Sbjct: 405 DVGIWMHHYVD----KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTA 459
Query: 394 LLSACNVHGD--VALGEKVGKILLQLQP-EVTFVDV 426
++ +HG A+ I + L P E+TF+ V
Sbjct: 460 IICGLALHGQPHAAISYFSEMISIGLVPDEITFIGV 495
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 226/429 (52%), Gaps = 56/429 (13%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+ N +RC ++ F + G L D+ T + + + A+ L L LGR++H
Sbjct: 227 IINGYVRCGLADEA---FDLYYKMGELNVMPDEVTMIGVVSASAQ---LENLALGRKLHQ 280
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGK----------------------------- 164
+ + G V +A L+ Y K+I + K
Sbjct: 281 SIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLES 340
Query: 165 --KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
++F++MP + WNA+I G+ Q+K++K+ AL LF +M S V P T+V
Sbjct: 341 AVRLFNEMPEKDVVLWNALIGGFV-QAKRSKE----ALALFHEM--QASSVAPDKITVVN 393
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
LS SQLG L+ G +H Y++K + +V +GTALVDMY+KCG + A+ +F M
Sbjct: 394 CLSACSQLGALDVGIWMHHYVDK--HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPG 451
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+N LTWTA+ G+A+HG+ + AI M G+ P+ +TF + +ACCH GLV++G
Sbjct: 452 RNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDY 511
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F M SK+G+ P +KHYSC+VDLLGRAG LEEA I +P +PDA++W +L +HG
Sbjct: 512 FYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHG 571
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+V +GE+ LL+L P + +V L+N+Y A W VRK M+ + VE
Sbjct: 572 NVHMGERAASKLLELDPHDGGI--------YVLLANMYGDANMWEQARKVRKMMEERGVE 623
Query: 463 TEPGSSILQ 471
PG S ++
Sbjct: 624 KTPGCSSIE 632
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/456 (26%), Positives = 210/456 (46%), Gaps = 65/456 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+A T+ + +K+IHAQ+I+ L S + +C + ++ + + N
Sbjct: 61 LEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAI-SEWRNLDYCDKILNNAANLNX 119
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +N IR P ++VL++ + KG D++TY CA F SLS W +
Sbjct: 120 FSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF-SLS--WTANE 176
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
I HV + GF ++ V +IH S ++ + +K+FD+ +R +WN++INGY C
Sbjct: 177 ILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGL 236
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ +A D + L V P + TM+ V+S S+QL L G +H +E+
Sbjct: 237 ADEAFDLYYKMGEL---------NVMPDEVTMIGVVSASAQLENLALGRKLHQSIEE--- 284
Query: 249 MPEN-DVFIGTALVDMYSKC-------------------------------GCLDNALLI 276
M N V + AL+DMY KC G L++A+ +
Sbjct: 285 MGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRL 344
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F+ M EK+V+ W A+ G + EA+ L M+ V P+ +T + +AC G +
Sbjct: 345 FNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGAL 404
Query: 337 EEGL---HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
+ G+ H D K + ++ + +VD+ + G++++A +P + +++ W +
Sbjct: 405 DVGIWMHHYVD----KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGR-NSLTWTA 459
Query: 394 LLSACNVHGD--VALGEKVGKILLQLQP-EVTFVDV 426
++ +HG A+ I + L P E+TF+ V
Sbjct: 460 IICGLALHGQPHAAISYFSEMISIGLVPDEITFIGV 495
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 157/482 (32%), Positives = 250/482 (51%), Gaps = 49/482 (10%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
H+ QIH ++ AL L+ CT S + +F++ P+L L+NT I+
Sbjct: 39 HLYQIHGFMLHRALDQDNLFLSQFIDACT---SLGLSSYAFSIFSNKTHPDLRLYNTAIK 95
Query: 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P +++ ++ GL D ++ L + + LS + +GRQIH
Sbjct: 96 ALSKTSSPINAIWLYTRIRIDGLRP-DSYSIPSVLKAVVK---LSAVEVGRQIHTQTVSS 151
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDCAF 197
+V VAT+LI Y+S +S +K+FD + + A WNAM+ GY + K+ F
Sbjct: 152 ALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVF 211
Query: 198 N-------------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
N A+ LFR M + V+P + M+ VLS + LG
Sbjct: 212 NEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKM--QLEEVEPDEIAMLAVLSACADLGA 269
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
LE G +H Y+EK + V + AL+DMY+K G + AL +F M++K+V+TW+ +
Sbjct: 270 LELGEWIHNYIEK--HGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVI 327
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
+A+HG G EAI + M V+PN VTF ++ +AC H G+V+ G + FD M+S + +
Sbjct: 328 AALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKI 387
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
EP I+HY C++DLL RAG+L+EA + +P + +A++W SLL+A N H D L + K
Sbjct: 388 EPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALK 447
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
L +L+P S ++V LSN YA+ +W + +VRK M+ V+ PG S+++
Sbjct: 448 HLAKLEP--------GNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEI 499
Query: 473 TT 474
Sbjct: 500 NN 501
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 248/466 (53%), Gaps = 31/466 (6%)
Query: 9 CFALLKLK-AITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQ---STKIVH 63
C ALL+L A + + KQIHA+ + + S PL A+ + + +P + ++
Sbjct: 15 CVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVAVLS 74
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+ H P + F NT++R V + L D TY L +CAR +L
Sbjct: 75 RLLPH-GPLDPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLLQACARLLALR 133
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS--ATWNAM 181
G +H K GF+ V V +L+H Y + S KVFD+MP+R +WN+M
Sbjct: 134 E---GECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSM 190
Query: 182 INGYCSQSKKAKDCAFNALVLFRDML-VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+N + + + + L +F +ML VD + P T+V VL+ ++ G L G VH
Sbjct: 191 LNSFAANGRPNE-----VLTVFWEMLGVDFA---PDGFTIVSVLTACAEFGALALGRRVH 242
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHG 299
Y+EK + EN + AL+D+Y+KCG +++A IF M + V++WT++ G+A +G
Sbjct: 243 VYVEKVGLV-ENS-HVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANG 300
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G EA+ L M + P +T + AC H GLV++G FD MK +G+ P I+H
Sbjct: 301 FGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHL 360
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLLGRAG +EEAY++I+ +P++P+A++WR+LL +C +H + LG+ + L++L P
Sbjct: 361 GCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDP 420
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
S D+V LSN+YA+ W DV +RK M RV P
Sbjct: 421 --------GHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNP 458
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 151/401 (37%), Positives = 231/401 (57%), Gaps = 24/401 (5%)
Query: 77 FNTLIR-CT---PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+NT+IR C+ PQ +L++ +G+ D + F + SC R L G Q+H
Sbjct: 5 YNTMIRACSMSDSPQKGLLLYRDMRRRGIAA-DPLSSSFVVKSCIRL-XGLYLLGGVQVH 62
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
++ K G ++ L+ T ++ Y+ + KVFD+MP R + WN MI+ C ++ +
Sbjct: 63 CNIFKYGHQWDTLLLTAVMDLYSXCQRGGDACKVFDEMPPRDTVAWNVMIS-CCIRNNRT 121
Query: 193 KDCAFNALVLFRDMLVDVS-GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
+D AL LF D+L + S +P D T + +L + L LEFG +HGYM + Y
Sbjct: 122 RD----ALSLF-DVLQNSSYKCEPDDVTCLLLLQACAHLYALEFGERIHGYMMEHGY--G 174
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ + AL+ MYS+CGCLD A +F KNV++W+AM +G+A++G G EAI + M
Sbjct: 175 GALNLSNALISMYSRCGCLDKAXEVFKGTGNKNVVSWSAMISGLAMNGYGREAIESFEEM 234
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEG-LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
G++P+ T T + +AC ++G+V+EG + FD M ++GV P++ HY C+VDLLG AG
Sbjct: 235 LRIGIRPDDQTLTGVLSACSYSGMVDEGMMSFFDRMSREFGVTPNVHHYGCMVDLLGHAG 294
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++A IM + KPD+ WR+LL AC +HG V LGE+V L++L+ + +
Sbjct: 295 LLDKAXQLIMSMVEKPDSTTWRTLLGACRIHGHVTLGERVIGHLIELKAQ--------EA 346
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D V L NIY+SA W V VRK MK K ++T PG S ++
Sbjct: 347 GDHVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIE 387
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 152/441 (34%), Positives = 233/441 (52%), Gaps = 50/441 (11%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR-- 118
VF ++ +N+LI +C +D + +F ++G+ D T + + +C R
Sbjct: 609 VFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKA-DKVTMIKVVSACTRLG 667
Query: 119 --------------FCSLSTLWLGRQIHVHVTKRGFM------------FNVLVATTLIH 152
+C ++LG + + +RG + N++ +I
Sbjct: 668 DYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIA 727
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
YA +DI S +K+FDQ+P + +W++MI+GY SQ+ D AL +FR M +
Sbjct: 728 AYAKGQDIVSARKIFDQIPKKDLISWSSMISGY-SQANHFSD----ALEIFRQM--QRAK 780
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
VKP + V+S + LG L+ G VH Y+ + + D + +L+DMY KCG
Sbjct: 781 VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNI--KADTIMENSLIDMYMKCGSAKE 838
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
AL +F M+EK+ L+W ++ G+A +G E++ L +M G +PN VTF + AC +
Sbjct: 839 ALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACAN 898
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
A LVEEGL F++MK + +EP +KHY C+VDLLGRAG LE+A FI +PI PD ++WR
Sbjct: 899 AKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWR 958
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452
LL +CN HGDVA+ E V K L +L+P S ++ LSN YASA RW + +V
Sbjct: 959 ILLGSCNTHGDVAIAEIVTKKLNELEPS--------NSGNYTLLSNAYASAHRWSEAMNV 1010
Query: 453 RKQMKVKRVETEPGSSILQTT 473
R+ M V PG S ++
Sbjct: 1011 RQCMADTDVRKSPGCSAVEAA 1031
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/464 (31%), Positives = 234/464 (50%), Gaps = 76/464 (16%)
Query: 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDS 89
+L+ L+ QL+Q++ S I H VF P L PQD+
Sbjct: 23 RLVALLLEHQDRRRQLLQIH--------SQLIAHQVFDRRPTPWHALLKAYSHGPHPQDA 74
Query: 90 VLVF--AYWVSKGLLTFDDFTYVFALGSCA-----RFCSLSTLWLGRQIHVHVTKRGFMF 142
+ +F A W + D + + FAL +CA R C Q+H V ++GF F
Sbjct: 75 LQLFRHARWHAAD----DTYAFTFALKACAGLGWPRCCM--------QLHGLVVRKGFEF 122
Query: 143 NVLVATTLIHFY-------------------------------ASNKDISSGKKVFDQMP 171
V T L++ Y A ++ + +F++MP
Sbjct: 123 QTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMP 182
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
R+ +W+ MI+GY + + A+ LFR M+ + G+ P++ T++ V+ S +G
Sbjct: 183 CRNVVSWSGMIDGYTRACRPVE-----AVALFRRMMAE--GISPSEITVLAVVPALSNVG 235
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTA 290
+ G +HGY EK + DV +G +L+D+Y+K G + N+L +F M ++ N+++WT+
Sbjct: 236 KILIGEALHGYCEKEGLVW--DVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTS 293
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ +G A+HG +A+ L MR G++PN +TF S+ AC H GLVE+G+ F +M ++
Sbjct: 294 IISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEY 353
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
+ P +KH+ CI+D+LGRAG L EA I P++ +A +WR+LL C+ +G+V +GE+
Sbjct: 354 NINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERT 413
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
K +L L+ E DFV LSN+ R+ D E VRK
Sbjct: 414 MKKILALEREF--------GGDFVVLSNMLTELRRFSDAEIVRK 449
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 192/412 (46%), Gaps = 50/412 (12%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
I IK++HA I + L + YA L P H VF + P FL+
Sbjct: 463 IVRMEAIKRLHAYYIVSGLYNCH-YAMSKVLRSYAILQPDLV-FAHKVFDQIEAPTTFLW 520
Query: 78 NTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
N LIR D+ + F G + D+ T+ F L +CAR +L+ G Q+H H
Sbjct: 521 NILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNE---GEQMHNH 577
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+TK G + ++ V+ +LIH YA+ ++ + VFD+M ++ +WN++I GY SQ + KD
Sbjct: 578 ITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY-SQCNRFKD 636
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
L LF+ L+ GVK TM+ V+S ++LG + Y+E Y E DV
Sbjct: 637 I----LALFK--LMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED--YCIEVDV 688
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLT--------------------------- 287
++G LVD + + G L +A +F M+ +N++T
Sbjct: 689 YLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKK 748
Query: 288 ----WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
W++M +G + ++A+ + M+ VKP+A+ S+ ++C H G ++ G +
Sbjct: 749 DLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVH 808
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+ ++ ++ + ++D+ + G +EA + K D + W S++
Sbjct: 809 EYVRRN-NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEK-DTLSWNSII 858
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 255/464 (54%), Gaps = 28/464 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA----QLIQLYCTKKASPQSTKIVHFVFTHFD 70
LK ++ +H+ +IHAQ++ + L++ + ++ L ++ S + + H F
Sbjct: 37 LKHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSAT 96
Query: 71 PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
P F+ PQ+++ +F +G+ ++ T+ F L +CA +L+TL G+Q
Sbjct: 97 MPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRP-NNLTFPFLLKACA---TLATLQEGKQ 152
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H K G +V V TLI+FY S K +S +KVFD+M R+ +WNA+I C ++
Sbjct: 153 FHAIAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVITA-CVENF 211
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
C A+ F M G +P +TTMV +LS ++LG L G VH + +
Sbjct: 212 ----CFDEAIDYFLKM--GNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVL 265
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+V +GTA VDMY+K G + A +F+ +++K+V TW+AM G+A HG NEAI L +
Sbjct: 266 --NVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTN 323
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M + PN VTF + AC HAGLV++ H F+ M+ +G++P + HY +VD+LGRAG
Sbjct: 324 MTSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDVLGRAG 383
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSAC---NVHGDVALGEKVGKILLQLQPEVTFVDVA 427
++EAY IM +P++PD I+WR+LLSAC +V+G + E+ K LL+L+P+
Sbjct: 384 QVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPK------- 436
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ V ++N +A W R+ MK + ++ G S ++
Sbjct: 437 -RGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIE 479
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 247/465 (53%), Gaps = 34/465 (7%)
Query: 15 LKAITTPSHIK---QIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L A ++PS +K QI +I S + L+ +Y A S K H VF
Sbjct: 420 LGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMY----AKCGSLKDAHRVFEKIS 475
Query: 71 PPNLFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
N+ +N +I + ++ F + +G+ + T+ L C S +L
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCK---SSDSLE 531
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LG+ +H + K G ++ V+ L+ + + D+ S K +F+ MP R +WN +I G+
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
K AF+ + ++ SG+KP T +L+ + L G +H + +
Sbjct: 592 QHGKN--QVAFDYFKMMQE-----SGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ + DV +GT L+ MY+KCG +++A +F ++ +KNV +WT+M TG A HG+G EA+
Sbjct: 645 AF--DCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALE 702
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M+ GVKP+ +TF +AC HAGL+EEGLH F +MK ++ +EP ++HY C+VDL
Sbjct: 703 LFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLF 761
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG L EA FI+ + ++PD+ +W +LL AC VH +V L EK + L+L P V
Sbjct: 762 GRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGV-- 819
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
FV LSNIYA+A W +V +RK M + V +PG S ++
Sbjct: 820 ------FVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 191/395 (48%), Gaps = 50/395 (12%)
Query: 42 YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVF---- 93
Y+ L+QL K +I + + P++F++NTLI +C + +F
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMR 172
Query: 94 -----------AYWVSKGL---------------LTFDDFTYVFALGSCARFCSLSTLWL 127
+V GL + D T+V L +CA ++
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK--- 229
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR+++ + K G+ ++ V T LI+ + DI KVFD +P R TW +MI G
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLAR 289
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + C LF+ M + GV+P V +L + LE G VH M++
Sbjct: 290 HGRFKQACN-----LFQRM--EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ + ++++GTA++ MY+KCG +++AL +F ++ +NV++WTAM G A HG+ +EA
Sbjct: 343 W--DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLF 400
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLL 366
+ M + G++PN VTF S+ AC ++ G + D+ +++ +G + ++ + ++ +
Sbjct: 401 FNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR--TALLSMY 458
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ G L++A+ I K + + W ++++A H
Sbjct: 459 AKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L C +F +L G +I+ H+ K G ++ + TLI+ YA + S K++F
Sbjct: 112 TYSALLQLCIKFKNLGD---GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIF 168
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D M + +WN ++ GY + A L M+ D VKP T V +L+
Sbjct: 169 DDMREKDVYSWNLLLGGYVQHGLYEE-----AFKLHEQMVQD--SVKPDKRTFVSMLNAC 221
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ ++ G ++ + K + + D+F+GTAL++M+ KCG + +A +F + ++++T
Sbjct: 222 ADARNVDKGRELYNLILKAGW--DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WT+M TG+A HG+ +A L M + GV+P+ V F SL AC H +E+G + MK
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339
Query: 348 S-KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
W E ++ + I+ + + G +E+A + + + + W ++++ HG +
Sbjct: 340 EVGWDTEIYVG--TAILSMYTKCGSMEDALE-VFDLVKGRNVVSWTAMIAGFAQHGRI 394
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 35/236 (14%)
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
VD S ++ T +L + + L G ++ +++K+ P D+F+ L++MY+KC
Sbjct: 101 VDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQP--DIFMWNTLINMYAKC 158
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G +A IF MREK+V +W + G HG EA +L + M VKP+ TF S+
Sbjct: 159 GNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSML 218
Query: 328 AACCHAGLVEEGLHLFD-NMKSKWG---------VEPHIK-------------------- 357
AC A V++G L++ +K+ W + HIK
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGEKV 410
++ ++ L R G ++A N + ++PD + + SLL ACN + G+KV
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 160/509 (31%), Positives = 252/509 (49%), Gaps = 59/509 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +H+KQ+ LI++ +A + +C + ++F + PN+
Sbjct: 50 LEKCSNLNHLKQLQGFLISHGHSQTQFFAFKLVRFCNLTLADLC--YARYIFDNLTSPNV 107
Query: 75 FLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+ +I P+ + L++ V +G + ++F Y L SC + +
Sbjct: 108 FLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNAT---KM 164
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYAS-NKDISSGKKVFDQMPMRSSATWNAMINGYCS-- 187
+H V K GF +V T ++ Y+ + DI S +++FD+M R+ +W AMI+GY
Sbjct: 165 VHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYARLG 224
Query: 188 ---------QSKKAKDC-AFNALV--------------LFRDM-LVDVSGV------KPT 216
+S +D A+NAL+ LF+ M L+ + G KP
Sbjct: 225 NFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPN 284
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
TT+ LS G+L G +HGY+ KT+ P D FI AL+DMY KCG L A +
Sbjct: 285 KTTLGSALSACGHTGMLHLGKWIHGYVFKTY--PGQDSFISNALLDMYGKCGNLKVARRV 342
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAG 334
F + KN+ +W ++ +A+HG AI L + CG VKPN VTF + AC H G
Sbjct: 343 FDMITLKNLTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNACTHGG 402
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LVE+G F+ M+ + +EP I+H+ C++DLLGRAG EEA + G+ I+PD ++W SL
Sbjct: 403 LVEKGYSYFEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEVVWGSL 462
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L+AC +HG L E K L+++ P+ + L+NIYA +W +V VR+
Sbjct: 463 LNACKIHGRSDLAEYSVKKLIEMDPK--------NGGYRIMLANIYAEFGKWDEVRKVRR 514
Query: 455 QMKVKRVETEPGSSILQTTTH----YTLD 479
+K K PG S ++ Y+ D
Sbjct: 515 LLKEKNAYKTPGCSWIEVDNQVYQFYSFD 543
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 248/466 (53%), Gaps = 44/466 (9%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPL--------YAQLIQLYCTKKASPQSTKIVHFVFTHF 69
I+ +K++H I + + L YA+ L C ++ VF
Sbjct: 249 ISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAER-----------VFYSM 297
Query: 70 DPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
+ + +N LI + P+ ++ ++ GL+ D FT L + A L +L
Sbjct: 298 ETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVP-DWFTIGSLLLASAH---LKSL 353
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
G+++H V + G + + +L+ Y + SS + +FD M +SS +WNAMI+GY
Sbjct: 354 RYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGY 413
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
SQ+ +D AL+LFR ++ D G +P+D +V VL SQ L G H Y K
Sbjct: 414 -SQNGLPED----ALILFRKLVSD--GFQPSDIAVVSVLGACSQQSALRLGKETHCYALK 466
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
M DVF+ + +DMY+K GC+ + +F ++ K++ +W A+ +HG G E+I
Sbjct: 467 ALLME--DVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESI 524
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L + MR G P+ TF + C HAGLVEEGL F+ M++ G+EP ++HY+C++D+
Sbjct: 525 ELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDM 584
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG L++A + +P +PD+ +W SLLS C G++ +G+ V + LL+L+P+
Sbjct: 585 LGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPK----- 639
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
E++V+LSN+YA + RW DV VR+ +K ++ + G S ++
Sbjct: 640 ---NVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIE 682
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 124/244 (50%), Gaps = 11/244 (4%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D++ +F ++ D+FT+ + +C SL LG IH V K G + +V V
Sbjct: 13 DAIDMFVKLITDTEFNADNFTFPCVIKACTG--SLDR-GLGEVIHGMVIKMGLLLDVFVG 69
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI Y + + KVF MP+R+ +WN++I+G+ S++ +KDC F+ LV +M+
Sbjct: 70 NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGF-SENGFSKDC-FDMLV---EMM 124
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
G+ P T+V VL V ++ ++ G +HG K DV + +LVDMYSKC
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGL--SEDVRVNNSLVDMYSKC 182
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPNAVTFTSL 326
G L A ++F + KN ++W M G+ G EA L M+ ++ N VT ++
Sbjct: 183 GYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNI 242
Query: 327 FAAC 330
AC
Sbjct: 243 LPAC 246
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 162/340 (47%), Gaps = 41/340 (12%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ ++ T + L +C L +L +++H + + GF ++ LVA + YA +
Sbjct: 232 IEVNEVTVLNILPACLEISQLRSL---KELHGYSIRHGFQYDELVANGFVAAYAKCGMLI 288
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
++VF M ++ +WNA+I G C+Q+ + AL L+ M SG+ P T+
Sbjct: 289 CAERVFYSMETKTVNSWNALIGG-CAQNGDPR----KALNLYIQMTY--SGLVPDWFTIG 341
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+L S+ L L +G VHG++ + + E D FIG +L+ +Y CG +A L+F M
Sbjct: 342 SLLLASAHLKSLRYGKEVHGFVLR--HGLEIDSFIGISLLSLYIHCGESSSARLLFDGME 399
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
EK+ ++W AM +G + +G +A+ L + G +P+ + S+ AC +
Sbjct: 400 EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSAL----- 454
Query: 342 LFDNMKSKWGVEPHIKHYSCI-----------VDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
+ G E H + +D+ ++G ++E+ + G+ K D
Sbjct: 455 -------RLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNK-DLAS 506
Query: 391 WRSLLSACNVHGD----VALGEKVGKILLQLQPEVTFVDV 426
W ++++A VHGD + L E++ K+ Q+ TF+ +
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKV-GQMPDGFTFIGI 545
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 122/274 (44%), Gaps = 18/274 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD------SVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF + NL +N++I +LV +GLL D T V L CAR
Sbjct: 88 VFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP-DIATLVTVLPVCAR 146
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ +G +IH K G +V V +L+ Y+ ++ + +FD+ +++ +W
Sbjct: 147 EVDVQ---MGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSW 203
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N MI G C+ K F A LFR+M + ++ + T++ +L ++ L
Sbjct: 204 NTMIGGLCT-----KGYIFEAFNLFREMQMQ-EDIEVNEVTVLNILPACLEISQLRSLKE 257
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+HGY + + + D + V Y+KCG L A +F M K V +W A+ G A +
Sbjct: 258 LHGYSIRHGF--QYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQN 315
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
G +A+ L M G+ P+ T SL A H
Sbjct: 316 GDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAH 349
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 7/207 (3%)
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+A+ +F ++ D + T CV+ + G +HG + K + DVF+G
Sbjct: 13 DAIDMFVKLITDTE-FNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLL--DVFVG 69
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR--DCG 315
AL+ MY K G +D A+ +F M +N+++W ++ +G + +G + +L M + G
Sbjct: 70 NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+ P+ T ++ C V+ G+ + + K G+ ++ + +VD+ + G+L EA
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIH-GLAVKLGLSEDVRVNNSLVDMYSKCGYLTEA 188
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + +A+ W +++ G
Sbjct: 189 -QMLFDKNNRKNAVSWNTMIGGLCTKG 214
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 151/440 (34%), Positives = 232/440 (52%), Gaps = 48/440 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F D ++ ++ LI ++++++F + G+ D+ V L +CA
Sbjct: 260 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGM-RLDEVVVVSVLSACAH-- 316
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
LS + G+ IH V + G V + LIH Y+ + +I +K+F+ +WN+
Sbjct: 317 -LSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNS 375
Query: 181 MING--YCSQSKKAK------------------------DCAFNALVLFRDMLVDVSGVK 214
MI+G C +KA+ DC L LF +M + ++
Sbjct: 376 MISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEM--QLGQIR 433
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P +T +V V+S + L L+ G VH Y+ K + +V +GT L+DMY KCGC++NAL
Sbjct: 434 PDETILVSVISACTHLAALDQGKWVHAYIRKNGL--KVNVILGTTLLDMYMKCGCVENAL 491
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F+ M EK V +W A+ G+A++G ++ + M++ GV PN +TF + AC H G
Sbjct: 492 EVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMG 551
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV+EG F +M K G+EP++KHY C+VDLLGRAG L EA I +P+ PD W +L
Sbjct: 552 LVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGAL 611
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-VALSNIYASAERWPDVESVR 453
L AC HGD +GE+VG+ L++LQP+ + F V LSNI+AS W DV VR
Sbjct: 612 LGACKKHGDTEMGERVGRKLIELQPD---------HDGFHVLLSNIFASKGDWEDVLEVR 662
Query: 454 KQMKVKRVETEPGSSILQTT 473
MK + V PG S+++
Sbjct: 663 GMMKQQGVVKTPGCSLIEAN 682
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 160/364 (43%), Gaps = 62/364 (17%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSV---LVFAYWVSKGLLTFDDFTYVFALGSCA-RFC 120
+F + N F++NT++R +S L+ + K + D++TY + +CA R
Sbjct: 97 IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 156
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
G++IH HV K GF +V V TLI+ YA ++ +K+FD+ P+ S +WN+
Sbjct: 157 EFG----GKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 212
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++ GY + DV K L F
Sbjct: 213 ILAGYVKKG-------------------DVEEAK------------------LIFDQ--- 232
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
MP+ ++ +++ + K G + A +F+ M EK++++W+A+ +G +G
Sbjct: 233 --------MPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGM 284
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EA+ + M G++ + V S+ +AC H +V+ G + + + G+E ++ +
Sbjct: 285 YEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQN 343
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
++ + +G + +A G D I W S++S C G V EK + L + PE
Sbjct: 344 ALIHMYSGSGEIMDAQKLFNG-SHNLDQISWNSMISGCMKCGSV---EK-ARALFDVMPE 398
Query: 421 VTFV 424
V
Sbjct: 399 KDIV 402
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 9/177 (5%)
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
LD +L IF R+ N W M +A+ L M V P+ T+ + A
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C L+E G + K G + + + ++++ G++ +A P+ D++
Sbjct: 151 CA-VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV-LDSV 208
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
W S+L+ GDV + K++ P+ V ++ V L + E W
Sbjct: 209 SWNSILAGYVKKGDV----EEAKLIFDQMPQRNIV---ASNSMIVLLGKMGQVMEAW 258
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 244/462 (52%), Gaps = 48/462 (10%)
Query: 24 IKQIHA----------QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+K+IH +L+ NA + YA+ L C ++ VF +
Sbjct: 420 LKEIHGYAFRHGFLKDELVANAFVAA--YAKCSSLDCAER-----------VFCGMEGKT 466
Query: 74 LFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ +N LI P S+ +F + G+ D FT L +CAR L L G+
Sbjct: 467 VSSWNALIGAHAQNGFPGKSLDLFLVMMDSGM-DPDRFTIGSLLLACAR---LKFLRCGK 522
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH + + G + + +L+ Y + GK +FD+M +S WN MI G+ S
Sbjct: 523 EIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGF---S 579
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ C AL FR ML G+KP + + VL SQ+ L G VH + K ++
Sbjct: 580 QNELPC--EALDTFRQMLS--GGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKA-HL 634
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E D F+ AL+DMY+KCGC++ + IF R+ EK+ W + G IHG G +AI L +
Sbjct: 635 SE-DAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFE 693
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M++ G +P++ TF + AC HAGLV EGL M++ +GV+P ++HY+C+VD+LGRA
Sbjct: 694 LMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRA 753
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G L EA + +P +PD+ +W SLLS+C +GD+ +GE+V K LL+L+P
Sbjct: 754 GQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPN--------K 805
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+E++V LSN+YA +W +V VR++MK + + G S ++
Sbjct: 806 AENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIE 847
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 191/406 (47%), Gaps = 34/406 (8%)
Query: 56 PQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
P+S+ H T P L + L D++ + G ++ D + A+G
Sbjct: 42 PKSSLTSH---TKTHSPILQRLHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKE-AIGI 97
Query: 116 CARFCSL-STLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMR 173
R C + +GR++H V+ + N V+++T +I Y++ S + VFD +
Sbjct: 98 LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+NA+++GY S++ +D A+ LF ++L + + P + T+ CV + + +
Sbjct: 158 DLFLYNALLSGY-SRNALFRD----AISLFLELL-SATDLAPDNFTLPCVAKACAGVADV 211
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
E G VH K +D F+G AL+ MY KCG +++A+ +F MR +N+++W ++
Sbjct: 212 ELGEAVHALALKAGGF--SDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMY 269
Query: 294 GMAIHGKGNEAI----RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+ +G E RLL S + G+ P+ T ++ AC G V G+ + + K
Sbjct: 270 ACSENGGFGECCGVFKRLLISEEE-GLVPDVATMVTVIPACAAVGEVRMGM-VVHGLAFK 327
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
G+ + + +VD+ + G+L EA + + + + W +++ + GD
Sbjct: 328 LGITEEVTVNNSLVDMYSKCGYLGEA-RALFDMNGGKNVVSWNTIIWGYSKEGDF---RG 383
Query: 410 VGKILLQLQ-------PEVTFVDV--ACTSE-DFVALSNIYASAER 445
V ++L ++Q EVT ++V AC+ E ++L I+ A R
Sbjct: 384 VFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFR 429
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 158/502 (31%), Positives = 247/502 (49%), Gaps = 67/502 (13%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L+ T +KQIH Q+I N L +L+ Y T + H VF + P+
Sbjct: 25 LQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNA----HKVFERIENPS 80
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++N +IR P V ++ V + ++FTY F +G CAR L G
Sbjct: 81 TTVWNQMIRGHSQSETPHKLVELYNRMV-EAEAEPNEFTYSFLIGGCARSRLLRE---GE 136
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYA---------------------------------- 155
Q+H V G+ NV V T+L++ YA
Sbjct: 137 QVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYV 196
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
D+ +++FD+MP R+ +W MI G C+Q + K AL LF +M +GVK
Sbjct: 197 RCGDVDGARRIFDEMPERNVVSWTTMIAG-CAQIGRCK----QALHLFHEM--RRAGVKL 249
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI--GTALVDMYSKCGCLDNA 273
+V LS ++LG L+ G +H Y+++ + + + +L+ MY+ CG +D A
Sbjct: 250 DQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKA 309
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV---KPNAVTFTSLFAAC 330
+F M++++ ++WT+M TG A G EA+ + M+ G +P+ +TF + AC
Sbjct: 310 YKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCAC 369
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
HAG V++G H F+ M KWG+ P I+HY C+VDLL RAG L+EA+ I +P+KP+ +
Sbjct: 370 SHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAV 429
Query: 391 WRSLLSACNVHGDVALGEKVG-KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
W +LL C +H + L V K+ L+L+P+ + V LSN+YA+A+RW DV
Sbjct: 430 WGALLGGCRIHKNAELASHVAQKLALELKPDQ-------AAGYLVLLSNVYATAKRWQDV 482
Query: 450 ESVRKQMKVKRVETEPGSSILQ 471
VR++M V G S +Q
Sbjct: 483 ALVRQKMVEIGVRKPAGRSWVQ 504
>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Brachypodium distachyon]
Length = 884
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 228/401 (56%), Gaps = 23/401 (5%)
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
P+ F N+++RC D++ + + T F+L + C TL RQ+
Sbjct: 378 PSTFCCNSILRCLSESDALSFL-----RRMRTLGRRGNAFSLAILLKPCR--TLSHARQL 430
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H +V G + + L+AT+L+ YA +KVFD+M M+ + WN +I Y +++K+
Sbjct: 431 HANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDEMVMKDTVAWNVLITCY-ARNKR 489
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
KD L LF +M S VKP + T + +L + LG L+FG + Y + Y E
Sbjct: 490 TKD----TLWLFDEMRRGESEVKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCE 545
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ + +++ MY++CGC++ A +F +K+V+TW+AM G+A +G G +AI + M
Sbjct: 546 --LKVRNSVITMYTRCGCVEKAYQVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEM 603
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV P+ TFT + +AC H+GLV+EG FD M+ ++ + P+++HY CIVDL+GRAG
Sbjct: 604 SRSGVVPDGQTFTGVLSACSHSGLVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGL 663
Query: 372 LEEAYNFIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L+EAY ++ + + PDA +WR+LL AC +HG V LGEKV L++L+ A +
Sbjct: 664 LDEAYELVVKEMKVAPDATIWRTLLGACRIHGHVDLGEKVISHLIELK--------AQQA 715
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V L N YA+A W V VRK M+ ++T PG + ++
Sbjct: 716 GDYVLLLNTYAAAGDWEKVAEVRKLMRENEIQTTPGCTTVE 756
>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 168/485 (34%), Positives = 244/485 (50%), Gaps = 61/485 (12%)
Query: 24 IKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+KQIHAQ +T L PL +L+ Y K +P+ + V F + P+ + +LI
Sbjct: 19 LKQIHAQALTQGLLFIEQPLACKLVNRY-AKLGNPRDAQKV---FGYIQDPDRVTYTSLI 74
Query: 82 R----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
P + VF+ V++GL D + V AL +C + L G+ +H + +
Sbjct: 75 NLYLSTQLPIKAFSVFSKLVNEGLRP-DSHSVVGALSACGKKQDLLN---GKLVHGMIFR 130
Query: 138 RGFMFNVLVATTLIHFYASN---------------KDISS----------------GKKV 166
N +V LI Y N KD+SS ++V
Sbjct: 131 FQLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRV 190
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+MP R+ W AMI GY + L +FR M + +PT T V VLS
Sbjct: 191 FDEMPWRNDVAWTAMITGYVRGGMPIR-----GLEMFRQMKAEGEN-QPTVITAVAVLSG 244
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ LG + G VHGY+ K + V + AL+DMYSK GC+++A+ IF R+ +K+V
Sbjct: 245 CADLGAHDHGQAVHGYISKVNL--DKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKDVF 302
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+WT M + + HGKGN A+ + M + GV PN VTF + + C H+GL+ E LF+ M
Sbjct: 303 SWTTMISAHSSHGKGNHALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGM 362
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+G EP I+HY C+VDLL RAG LEEA I +P+ PDA++WRSLLSAC ++ L
Sbjct: 363 IQCYGFEPKIEHYGCMVDLLCRAGLLEEAKELIDNMPMDPDAVIWRSLLSACMNQRNLGL 422
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
E GK +++L+P V +V LSNIY A R D +RK M ++V +P
Sbjct: 423 AEIAGKKIIELEPHDDGV--------YVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPA 474
Query: 467 SSILQ 471
S ++
Sbjct: 475 CSYIE 479
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 247/471 (52%), Gaps = 47/471 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFT 67
LL L + T S +KQ+HAQ I P LY++++ +S + VF
Sbjct: 30 LLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHF-----SSLHDLRYAFRVFH 84
Query: 68 HFDPPNLFLFNTLIRCTP-----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+ PN F++N LIR Q ++ ++ + +G + D T+ F L +CA +L
Sbjct: 85 QIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFAL 144
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S G QIH + K GF +V + +L+HFYA+ + K VFD+M RS +WN +I
Sbjct: 145 SE---GEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVI 201
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+ + + D A N LF +M +P T+ + + + +G L G
Sbjct: 202 DAFVRFGEF--DAALN---LFGEMQ---KFFEPDGYTIQSIANACAGMGSLSLGIV---- 249
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
NDV + T+LVDMY KCG L+ AL +F RM +++V +W +M G + HG+
Sbjct: 250 ---------NDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVA 300
Query: 303 EAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
A+ M R + PNA+TF + +AC H GLV EG FD M +++ ++P ++HY C
Sbjct: 301 AALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGC 360
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA-CNVHGDVALGEKVGKILLQLQPE 420
+VDLL RAG ++EA + + +P++PD ++WRSLL A C + V L E++ + +L+ +
Sbjct: 361 LVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGG 420
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V S +V LS +YASA RW DV VRK M K V EPG S ++
Sbjct: 421 V-------CSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIE 464
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 156/471 (33%), Positives = 244/471 (51%), Gaps = 46/471 (9%)
Query: 24 IKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
++QIHAQ+I TN L ++LI +C+ VF+ PN F+F LI+
Sbjct: 22 LRQIHAQMIKTNLLNHQFTVSRLIA-FCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIK 80
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFD---DFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ P +S++++A +S L + +F+ L +C + + GRQ+H V
Sbjct: 81 GFSDTSNPVESLILYARMLS--CLNYSSGVEFSIPSVLKACGKLLAFDE---GRQVHGQV 135
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K F+ V +++ Y +I ++VFD+MP R +WN+MI GY KA +
Sbjct: 136 LKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYL----KAGEI 191
Query: 196 AFNALVLFRDM----LVDVS-------------GVKPTDTTMVCVLSVSSQLGLLEFGAC 238
A LF +M LV + G++P +V VLS + LG +E G
Sbjct: 192 EL-ASELFDEMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKW 250
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAI 297
+H Y+ + + FIG+AL+DMYSKCG ++NA +F + +N+ W +M +G+AI
Sbjct: 251 LHAYVSMN-KIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAI 309
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG EA+ + M ++PN +TF L + C H GLVEEG F++M K+ + P I+
Sbjct: 310 HGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQ 369
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C++DL GRAG LE+A I +P + D + W+++LSA HG + +G+ ++L
Sbjct: 370 HYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIEL 429
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
P+ S +V LSNIYA A RW DV +R M+ + V+ G S
Sbjct: 430 APD--------DSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 472
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 225/399 (56%), Gaps = 22/399 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L N +R +++ F S G+ D+ T V L + A L +W GR +H
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGV-EVDEVTVVSVLCAAAM---LRDVWFGRWVHGFY 230
Query: 136 TKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+ G +++V V + L+ Y+ KVF++MP R+ +W A+I GY Q + K+
Sbjct: 231 VESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYV-QCNRYKE 289
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
AL +F++M+++ G++P +T+ L+ +QLG L+ G +H Y++++ +
Sbjct: 290 ----ALKVFQEMIIE--GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSK- 342
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+GTALVDMYSKCGC+D ALL+F ++ K+V WTAM G+A+ G ++ L M
Sbjct: 343 -LGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRS 401
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
V+PN VTF + +AC H GLV+EGL LF M + +EP++ HY C+VDLLGRAG LEE
Sbjct: 402 RVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEE 461
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A FI +P++P +W +L S C +H LGE +G L++LQP S ++
Sbjct: 462 AIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPH--------HSGRYI 513
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
L+N+Y+ ++W +VR+ MK K V+ P S ++
Sbjct: 514 LLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVN 552
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 211/429 (49%), Gaps = 39/429 (9%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T H+ Q + LIT+ L + L +++ + +F P +FL+NT
Sbjct: 20 TFDHLNQTTSILITSGLAHHTFF-----LSDLLRSATKDLGYTLLLFDRLATPYIFLWNT 74
Query: 80 LIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
++R + PQ ++ ++ + G++ D T+ L + ++ + + Q + H+
Sbjct: 75 IVRSFSASSQPQMVLVAYSRLRNHGVIP-DRHTFPLLLKAFSKLRNENPF----QFYAHI 129
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G F+ V +L+ +A + +++F + + +W A+ING C ++ +A +
Sbjct: 130 VKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING-CLRNGRAVE- 187
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN--- 252
AL F +M SGV+ + T+V VL ++ L + FG VHG FY+
Sbjct: 188 ---ALECFVEM--RSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHG-----FYVESGRVI 237
Query: 253 -DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV++G+ALVDMYSKCG D+A+ +F+ M +N+++W A+ G + EA+++ M
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEM 297
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAG 370
G++PN T TS AC G +++G L + + +SK G+ + + +VD+ + G
Sbjct: 298 IIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLG--TALVDMYSKCG 355
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV--ALGEKVGKILLQLQPE-VTFVDV- 426
++EA +P K D W ++++ + GD +L I ++QP VTF+ V
Sbjct: 356 CVDEALLVFEKLPAK-DVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVL 414
Query: 427 -ACTSEDFV 434
AC V
Sbjct: 415 SACAHGGLV 423
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 239/432 (55%), Gaps = 30/432 (6%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKG 100
L+ +Y +K S K+V F ++ + ++I R ++V +F +G
Sbjct: 337 LLDMY-SKCGDLDSAKVV---FREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEG 392
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
+ + D +T L CAR L G+++H + + F++ V+ L+ YA +
Sbjct: 393 I-SPDVYTVTAVLNCCARNRLLDE---GKRVHEWIKENDMGFDIFVSNALMDMYAKCGSM 448
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTT 219
+ VF +M ++ +WN +I GY +K+C N AL LF +LV+ P + T
Sbjct: 449 REAELVFSEMRVKDIISWNTVIGGY------SKNCYANEALSLFNLLLVE-KRFSPDERT 501
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ CVL + L + G +HGY+ + Y +D + +LVDMY+KCG L A L+F
Sbjct: 502 VACVLPACASLSAFDKGREIHGYIMRNGYF--SDRHVANSLVDMYAKCGALLLARLLFDD 559
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ K++++WT M G +HG G EAI L + MR G++P+ ++F SL AC H+GLV+EG
Sbjct: 560 ITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEG 619
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F+ M+ + +EP ++HY+CIVD+L R G+L +AY FI +PI PDA +W +LL C
Sbjct: 620 WRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCR 679
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H DV L E+V + + +L+PE T +V ++NIYA AE+W +V+ +RK++ +
Sbjct: 680 IHHDVKLAERVAEKVFELEPENTGY--------YVLMANIYAEAEKWEEVKRLRKRIGQR 731
Query: 460 RVETEPGSSILQ 471
+ PG S ++
Sbjct: 732 GLRKNPGCSWIE 743
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 165/325 (50%), Gaps = 21/325 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR--FCSLSTLWLGRQIHV 133
L N L + S+ +F +S G+ D +T+ SC F SL ++ G Q+H
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTF-----SCVSKSFSSLRSVNGGEQLHG 219
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
++ K GF V +L+ FY N + S +KVFD+M R +WN++INGY S K
Sbjct: 220 YILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
L +F ML SG++ T+V V + + L+ G VH + K + E D
Sbjct: 280 -----GLSVFVQMLF--SGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRE-D 331
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F T L+DMYSKCG LD+A ++F M ++V+++T+M G A G EA++L + M +
Sbjct: 332 RFCNT-LLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK-SKWGVEPHIKHYSCIVDLLGRAGHL 372
G+ P+ T T++ C L++EG + + +K + G + + + ++D+ + G +
Sbjct: 391 EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSM 448
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSA 397
EA + +K D I W +++
Sbjct: 449 REAELVFSEMRVK-DIISWNTVIGG 472
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 131/267 (49%), Gaps = 17/267 (6%)
Query: 113 LGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
L S + C+ S +L G+++ + GF+ + + + L Y + D+ +VFDQ+
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVK 156
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+ + WN ++N + AK F+ + LF+ M+ SGV+ T CV S L
Sbjct: 157 IEKALFWNILMN------ELAKSGDFSGSIGLFKKMM--SSGVEMDSYTFSCVSKSFSSL 208
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
+ G +HGY+ K+ + N V G +LV Y K +D+A +F M E++V++W +
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSV--GNSLVAFYLKNHRVDSARKVFDEMTERDVISWNS 266
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKS 348
+ G +G + + + M G++ + T S+FA C + L+ G +H F +K+
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCF-GVKA 325
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+ E + + ++D+ + G L+ A
Sbjct: 326 CFSRED--RFCNTLLDMYSKCGDLDSA 350
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 10/223 (4%)
Query: 207 LVDVSGVKPTDTTMVC-VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
L+ VSG D +C VL + + L+ G V ++ ++ +++ +G+ L MY+
Sbjct: 83 LLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSN--LGSKLALMYT 140
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
CG L A +F +++ + L W + +A G + +I L M GV+ ++ TF+
Sbjct: 141 NCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSC 200
Query: 326 LFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ + V G L +KS +G + + S + L H ++ +
Sbjct: 201 VSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN-SLVAFYL--KNHRVDSARKVFDEMT 257
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
+ D I W S+++ +G L EK + +Q+ +D+A
Sbjct: 258 ERDVISWNSIINGYVSNG---LAEKGLSVFVQMLFSGIEIDLA 297
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 169/525 (32%), Positives = 254/525 (48%), Gaps = 80/525 (15%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP-- 72
L+ T + +KQ+H Q+ N L P + + ASP+S F F
Sbjct: 32 LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91
Query: 73 ---NLFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
LF+ N+LIR ++++L++ + G+ T + +T+ F L C + +
Sbjct: 92 SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGV-TPNHYTFPFVLSGCTKIAAFCE- 149
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
G Q+H V K G +V + LIHFYA + G KVF+ M R+ +W ++I GY
Sbjct: 150 --GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207
Query: 186 -------------------------------CSQSKKAK----DCAFNALVLFRDMLVDV 210
C AK +C LVL+ +L +
Sbjct: 208 ARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 267
Query: 211 S------------------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
+ G +P TM+ +S S+QL L +G HGY T Y+ +N
Sbjct: 268 ARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHT-YIEKN 326
Query: 253 ----DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
D+ + TALVDM+++CG +A+ +F++M E++V WTA MA+ G G A L
Sbjct: 327 GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLF 386
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
+ M GVKP+ V F + AC H G VE+GLH+F M+ G+ P I+HY C+VDLLGR
Sbjct: 387 NQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDH-GISPQIEHYGCMVDLLGR 445
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L EA++ I +P++P+ ++W SLL+AC VH +V + + + +L P+ V
Sbjct: 446 AGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGV---- 501
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
V LSNIYASA +W DV VR ++ K V PGSS +Q
Sbjct: 502 ----HVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVN 542
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 131/304 (43%), Gaps = 33/304 (10%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF---YASNKDIS 161
D T L R C TL +Q+H +TK G T L++ AS + +
Sbjct: 20 DPMTKDSCLNESLRCCK--TLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLD 77
Query: 162 SGKKVFD--QMPMRSSATW---NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+K F+ + +RS N++I GY S A++L+ MLV GV P
Sbjct: 78 YARKAFELFKEDVRSDDALFMLNSLIRGYSSAG-----LGREAILLYVRMLV--LGVTPN 130
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T VLS +++ G VHG + K E DVFI L+ Y++CG +D+ +
Sbjct: 131 HYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGL--EEDVFIQNCLIHFYAECGHMDHGHKV 188
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F M E+NV++WT++ G A + EA+ L M N V +L G +
Sbjct: 189 FEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEML------NKVMVNALVDMYMKCGAI 242
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRS 393
+ LFD V+ ++ Y+ I+ R G EA + ++ +PD + S
Sbjct: 243 DAAKRLFDEC-----VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLS 297
Query: 394 LLSA 397
+SA
Sbjct: 298 AISA 301
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 161/487 (33%), Positives = 255/487 (52%), Gaps = 57/487 (11%)
Query: 26 QIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
Q+HA L++ + S +Y + LI +Y + S VF+ NL +N+LI C
Sbjct: 168 QVHA-LVSKSRYSTDVYMGSALIDMY----SKCGSVACAEEVFSGMIERNLVTWNSLITC 222
Query: 84 ----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P +++ VF + GL D+ T + +CA C+L G QIH V K
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEP-DEVTLASVVSACASLCALKE---GLQIHARVVKTN 278
Query: 140 -FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC------------ 186
F ++++ L+ YA ++ ++VFD+M +R+ + +M++GY
Sbjct: 279 KFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMF 338
Query: 187 SQSKKAKDCAFNALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
S+ + ++NAL+ LFR L+ + PT T +LS + L
Sbjct: 339 SKMTQRNVVSWNALIAGYTQNGENEEALRLFR--LLKRESIWPTHYTFGNLLSACANLAD 396
Query: 233 LEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L G H ++ K + E+D+F+G +L+DMY KCG +++ +F +M+E++ ++W
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 456
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
A+ G A +G G EA+++ M CG KP+ VT + AC HAGLVEEG H F +M+
Sbjct: 457 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE 516
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
G+ P HY+C+VDLLGRAG L EA N I +P+ PDA++W SLL+AC VHG++ +G+
Sbjct: 517 H-GLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGK 575
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+ LL++ P S +V LSN+YA RW DV VRK M+ + V +PG S
Sbjct: 576 HAAEKLLEIDP--------WNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCS 627
Query: 469 ILQTTTH 475
++ +
Sbjct: 628 WIEVESR 634
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 26/281 (9%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN----- 183
R +H + F + + LI Y + +K+FD+MP R++ TWN++I+
Sbjct: 35 RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94
Query: 184 GYCSQSKK-------AKDCAFNALV-------LFRDMLVDVSGVKPTD-----TTMVCVL 224
G+ ++ + C++N++V F + L + D + L
Sbjct: 95 GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + L L G VH + K+ Y DV++G+AL+DMYSKCG + A +FS M E+N
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRY--STDVYMGSALIDMYSKCGSVACAEEVFSGMIERN 212
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++TW ++ T +G +EA+ + M D G++P+ VT S+ +AC ++EGL +
Sbjct: 213 LVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHA 272
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ + + +VD+ + + EA + I+
Sbjct: 273 RVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 158/320 (49%), Gaps = 33/320 (10%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
+++++ AL +CA L L +G Q+H V+K + +V + + LI Y+ ++
Sbjct: 145 LNEYSFGSALSACA---GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACA 201
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
++VF M R+ TWN++I Y Q+ A + AL +F M+ SG++P + T+ V
Sbjct: 202 EEVFSGMIERNLVTWNSLITCY-EQNGPASE----ALEVFVRMMD--SGLEPDEVTLASV 254
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S + L L+ G +H + KT +D+ +G ALVDMY+KC ++ A +F RM +
Sbjct: 255 VSACASLCALKEGLQIHARVVKTNKF-RDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV++ T+M +G A A + M + N V++ +L A G EE L LF
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKM----TQRNVVSWNALIAGYTQNGENEEALRLF 369
Query: 344 DNMKSKWGVEPHIKHYS-------C--IVD-LLGRAGH---LEEAYNFIMGIPIKPDAIL 390
+K + + P HY+ C + D LLGR H L++ + F G + D +
Sbjct: 370 RLLKRE-SIWP--THYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSG--AESDIFV 424
Query: 391 WRSLLSACNVHGDVALGEKV 410
SL+ G + G +V
Sbjct: 425 GNSLIDMYMKCGSIEDGSRV 444
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 236/446 (52%), Gaps = 49/446 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF N+ +N+LI C P +++ VF + + + D+ T + +CA
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML-ESRVEPDEVTLASVISACA--- 264
Query: 121 SLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
SLS + +G+++H V K + N ++++ + YA I + +FD MP+R+
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324
Query: 180 AMINGYC-SQSKKAKDCAF-------------------------NALVLFRDMLVDVSGV 213
+MI+GY + S KA F AL LF L+ V
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF--CLLKRESV 382
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGC 269
PT + +L + L L G H ++ K + E+D+F+G +L+DMY KCGC
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ L+F +M E++ ++W AM G A +G GNEA+ L M + G KP+ +T + +A
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C HAG VEEG H F +M +GV P HY+C+VDLLGRAG LEEA + I +P++PD++
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W SLL+AC VH ++ LG+ V + LL+++P S +V LSN+YA +W DV
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPS--------NSGPYVLLSNMYAELGKWEDV 614
Query: 450 ESVRKQMKVKRVETEPGSSILQTTTH 475
+VRK M+ + V +PG S ++ H
Sbjct: 615 MNVRKSMRKEGVTKQPGCSWIKIQGH 640
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 29/309 (9%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L SC + LS +++ R +H V K GF + + LI Y+ + G++VFD+MP
Sbjct: 26 LDSCIK-SKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQ 83
Query: 173 RSSATWNAMINGYCS-----------QSKKAKD-CAFNALV------------LFRDMLV 208
R+ TWN+++ G +S +D C +N++V L ++
Sbjct: 84 RNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMM 143
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
G + + VLS S L + G VH + K+ ++ +DV+IG+ALVDMYSKCG
Sbjct: 144 HKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFL--SDVYIGSALVDMYSKCG 201
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+++A +F M ++NV++W ++ T +G EA+ + M + V+P+ VT S+ +
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC ++ G + + + I + VD+ + ++EA +PI+ +
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NV 320
Query: 389 ILWRSLLSA 397
I S++S
Sbjct: 321 IAETSMISG 329
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 162/490 (33%), Positives = 257/490 (52%), Gaps = 65/490 (13%)
Query: 21 PSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
P H + + L+ N P Y L QL+ + ++ + H H + +L LFN L
Sbjct: 30 PKHPQHFLSLLLNNP---SPHYHFLQQLH----SQIITSSLFHHYPFHNNLTSLLLFNNL 82
Query: 81 IRCTP----PQDSVLVFAYWVSK--GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
IR P +S+ F + ++ L+ D FT F +CA +L T G +H
Sbjct: 83 IRSYSLSLFPHESLKFFTHTLNNLTHSLSLDSFTLTFLAHACA---NLDTTHFGFHLHCI 139
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA-------------- 180
V K GF +V V T L+H Y++ + +VF +MP R++ TWN
Sbjct: 140 VCKMGFENHVFVQTGLLHMYSNWGFLVDAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFA 199
Query: 181 -----------------MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+I+GY +K K AL LFR M ++V G++P + T++ V
Sbjct: 200 RSVFDRMVVRSVVSWTLVIDGYTRMNKPLK-----ALALFRKM-IEVDGIEPNEVTLLTV 253
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE- 282
+ LG ++ VHGY+EK + D+ I AL+D+Y+KCGC+++A +FS M +
Sbjct: 254 FPAIAHLGNVKMCESVHGYVEKRGFNAV-DIRIVNALIDLYAKCGCIESASGLFSEMPDW 312
Query: 283 -KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+N ++W ++ +G A G EA+ + M GV+PN V F S+ +AC H+GLVEEGL
Sbjct: 313 RRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRPNHVAFLSILSACSHSGLVEEGLE 372
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK-PDAILWRSLLSACNV 400
F M + +G+ P IKHY C++D+LGRAG L EA + +P + + ++WR+LL AC+V
Sbjct: 373 FFGKMVNDYGLVPDIKHYGCVIDMLGRAGRLGEAEKVALEVPHEAANDVIWRTLLGACSV 432
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
H +V +G++V K +L+++ D+V +SNI+AS R+ DVE +R+ + +
Sbjct: 433 HDNVEIGKRVTKKILEME--------KGHGGDYVLMSNIFASVGRFKDVERLREMIDKRN 484
Query: 461 VETEPGSSIL 470
V PG SI+
Sbjct: 485 VFKLPGYSIV 494
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 217/377 (57%), Gaps = 25/377 (6%)
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNVLVATTLIHFYA 155
VS +LT + A+ C C GR +H ++ +RG+ + +++ ++ YA
Sbjct: 267 VSPDVLTL--LSLASAIAQCGDICG------GRSVHCYMVRRGWDVGDIIAGNAIVDMYA 318
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
I + +++FD MP+R + +WN +I GY A A+ ++ D + G+KP
Sbjct: 319 KLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNG-----LASEAIHVY-DHMQKHEGLKP 372
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T V VL S LG L+ G +H KT DV++GT ++D+Y+KCG LD A+L
Sbjct: 373 IQGTFVSVLPAYSHLGALQQGTRMHALSIKTGL--NLDVYVGTCVIDLYAKCGKLDEAML 430
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F + ++ W A+ +G+ +HG G +A+ L M+ G+ P+ VTF SL AAC HAGL
Sbjct: 431 LFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGL 490
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++G + F+ M++ +G++P KHY+C+VD+ GRAG L++A++FI +PIKPD+ +W +LL
Sbjct: 491 VDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALL 550
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
AC +HG+V +G+ + L +L P+ +V +SN+YA +W V+ VR
Sbjct: 551 GACRIHGNVEMGKVASQNLFELDPKNVGY--------YVLMSNMYAKVGKWDGVDEVRSL 602
Query: 456 MKVKRVETEPGSSILQT 472
++ + ++ PG S ++
Sbjct: 603 VRRQNLQKTPGWSSIEV 619
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 188/435 (43%), Gaps = 36/435 (8%)
Query: 15 LKAITTPSHIKQIHA------QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
L+A P Q+HA L +A S L ++ + A ++ H
Sbjct: 78 LRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPA 137
Query: 69 FDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
++ + + L R ++V +F V +G+ D T L C L L
Sbjct: 138 WNA----MLSGLCRNARAAEAVGLFGRMVMEGV-AGDAVTVSSVLPMCVL---LGDRALA 189
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+H++ K G + V +I Y + +KVFD M R TWN++I+G+
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ A A RD SGV P T++ + S +Q G + G VH YM + +
Sbjct: 250 GQVAS--AVEMFCGMRD-----SGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGW 302
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
D+ G A+VDMY+K ++ A +F M ++ ++W + TG +G +EAI +
Sbjct: 303 -DVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVY 361
Query: 309 DSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
D M + G+KP TF S+ A H G +++G + + K G+ + +C++DL
Sbjct: 362 DHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMH-ALSIKTGLNLDVYVGTCVIDLYA 420
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------V 421
+ G L+EA P + W +++S VHG G K + Q+Q E V
Sbjct: 421 KCGKLDEAMLLFEQTPRRSTGP-WNAVISGVGVHGH---GAKALSLFSQMQQEGISPDHV 476
Query: 422 TFVDV--ACTSEDFV 434
TFV + AC+ V
Sbjct: 477 TFVSLLAACSHAGLV 491
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 214/387 (55%), Gaps = 22/387 (5%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P ++ F+ ++KG + DD T + AL +CAR C + +G+ H + GF N
Sbjct: 177 PNKALQAFS-QMAKGQVMLDDVTLLNALVACARTCMMK---VGKLCHALLVTNGFEINCY 232
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
+ ++LI YA + +++FD MP R++ W +MI+GY +Q ++K+ A+ LFRD
Sbjct: 233 MGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGY-TQLGQSKE----AIKLFRD 287
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M ++GVK D T+ V+S Q+G L+ G VH Y + + D+ + +L+DMYS
Sbjct: 288 M--QIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCD--IHGLGKDISVKNSLIDMYS 343
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFT 324
KCG + A IF M +++ +WT + G A +G EA+ L M + GV PN +TF
Sbjct: 344 KCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFL 403
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ +C H GLVE+G F M S +G+ P I+HY C+VDLLGRA L EA FI +PI
Sbjct: 404 GVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPI 463
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
PDA++WRSLL AC G+V L E V + + L+P D V LS +YA+
Sbjct: 464 APDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGD--------VLLSTVYATTS 515
Query: 445 RWPDVESVRKQMKVKRVETEPGSSILQ 471
RW D VR + R +PG S ++
Sbjct: 516 RWVDANKVRTGIYSGRKTKQPGCSFIE 542
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 181/368 (49%), Gaps = 42/368 (11%)
Query: 100 GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
G + D+++ AL + AR + ++ +G Q+H K G + V TLI+ Y+S
Sbjct: 87 GYMPIDNYSLSAALSTAAR---MPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSY 143
Query: 160 ISSGKKVFDQMPMRSSAT--WNAMINGYCSQSKKAKDC-AFNALVLFRDMLVDVSGVKPT 216
S+ + V D P +S T WN +I GY K AF+ + + ML DV
Sbjct: 144 PSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDV------ 197
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T++ L ++ +++ G H + + E + ++G++L+ MY+KCG +++A I
Sbjct: 198 --TLLNALVACARTCMMKVGKLCHALLVTNGF--EINCYMGSSLISMYAKCGQVEDARRI 253
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F M ++N + WT+M +G G+ EAI+L M+ GVK + T +++ ++C G +
Sbjct: 254 FDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGAL 313
Query: 337 EEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
+ G +H + ++ G+ I + ++D+ + G +++AY+ G+ +K D W +
Sbjct: 314 DLGRYVHAYCDIH---GLGKDISVKNSLIDMYSKCGDIKKAYDIFCGM-VKRDNFSWTVI 369
Query: 395 L---SACNVHGDV----ALGEKVGKILLQLQPEVTFVDV--ACTSEDFVA--------LS 437
+ +A + G+ A E+ G ++ E+TF+ V +C+ V +S
Sbjct: 370 IMGFAANGLSGEALDLFAQMEEEGGVMPN---EITFLGVLTSCSHGGLVEQGYRHFHRMS 426
Query: 438 NIYASAER 445
+IY A R
Sbjct: 427 SIYGIAPR 434
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/470 (34%), Positives = 237/470 (50%), Gaps = 67/470 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ +P ++Q+HAQ+I L + L C S + + F P
Sbjct: 68 LRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQI-FKCVEKQKPET 126
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++N+ ++ P D++++F Y + + + D FT L +C LS GR
Sbjct: 127 FVWNSCLKALAEGDSPIDAIMLF-YRLRQYDVCPDTFTCSSVLRACLNLLDLSN---GRI 182
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H V K GF +W +MI GY Q
Sbjct: 183 LHGVVEKVGF-----------------------------------RSWTSMIAGYV-QCG 206
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
KAK+ A+ LF M + +GVK + T+V VL+ + LG L+ G +H Y + +
Sbjct: 207 KAKE----AIHLFAKM--EEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF-- 258
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ +V I L+DMY KCGCL+ A +F M E+ V++W+AM G+A+HG+ EA+RL
Sbjct: 259 KRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSD 318
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M G++PN VTF L AC H GL+ EG F +M +G+ P I+HY C+VDLL RAG
Sbjct: 319 MSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAG 378
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L EA+ FI+ +P+KP+ ++W +LL AC VH +V + E+ K LL+L P
Sbjct: 379 LLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDP--------LND 430
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDG 480
+V LSNIYA A RW D VRK MK ++V+ PG S + T+DG
Sbjct: 431 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSI------TVDG 474
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 214/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D TYV L + L L LG+++H + K GF N++V+ TL+ YA ++
Sbjct: 474 DSVTYVMLLSMSTQ---LGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSL 530
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVF+ M R TWN +I C S+ DC ++ R + GV P TM+ +L
Sbjct: 531 KVFENMKARDIITWNTII-ASCVHSE---DCNLGLRMISR---MRTEGVTPDMATMLSIL 583
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
V S L G +HG + K E+DV +G L++MYSKCG L N+ +F M+ K+
Sbjct: 584 PVCSLLAAKRQGKEIHGCIFKLGL--ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKD 641
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWTA+ + ++G+G +A+R M G+ P+ V F ++ AC H+GLVEEGL+ F
Sbjct: 642 VVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFH 701
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MK + +EP I+HY+C+VDLL R+ L++A +FI+ +P+KPD+ +W +LLSAC + GD
Sbjct: 702 RMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDT 761
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ ++V + +++L P+ T +V +SN+YA+ +W V S+RK +K + ++ +
Sbjct: 762 EIAQRVSERIIELNPDDTGY--------YVLVSNVYAALGKWDQVRSIRKSIKARGLKKD 813
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 814 PGCSWME 820
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/417 (26%), Positives = 196/417 (47%), Gaps = 26/417 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L + T + + ++H+ +IT L ++ A+LI Y + P S+ VF P N
Sbjct: 82 LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSS---FSVFRLASPSN 137
Query: 74 -LFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++ +N++IR L + L D +T+ + +CA L + +
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA---GLLDFEMAK 194
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH V GF ++ + LI Y D+ +KVF++MP+R +WN++I+GY +
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ A FR++ GV P TM VL LG +E G +HG +EK
Sbjct: 255 YWNE--ALEIYYRFRNL-----GVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI- 306
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ DV + L+ MY K L + IF +M ++ ++W M G + G E+I+L
Sbjct: 307 -KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 365
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M + KP+ +T TS+ AC H G +E G ++ D M + G E + ++++ +
Sbjct: 366 EMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKC 423
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL-LQLQPE-VTFV 424
G+L + G+ K D++ W S+++ +G K+ K++ ++P+ VT+V
Sbjct: 424 GNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYV 479
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 145/283 (51%), Gaps = 14/283 (4%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L G+ +H ++ G+ + + LI+ YA ++ + ++VF M + S +WN+M
Sbjct: 388 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 447
Query: 182 INGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
IN Y ++ +F+ A+ LF+ M DV KP T V +LS+S+QLG L G +H
Sbjct: 448 INVY------IQNGSFDEAMKLFKMMKTDV---KPDSVTYVMLLSMSTQLGDLXLGKELH 498
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ K + +++ + LVDMY+KCG + ++L +F M+ ++++TW +
Sbjct: 499 CDLAKMGF--NSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSED 556
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
N +R++ MR GV P+ T S+ C +G + + K G+E + +
Sbjct: 557 CNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI-FKLGLESDVPVGN 615
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++++ + G L ++ + K D + W +L+SAC ++G+
Sbjct: 616 VLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE 657
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 219/389 (56%), Gaps = 20/389 (5%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++ L W+ + + D+FTY L +CA + +L+ G +IH + K + V
Sbjct: 458 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNC---GMEIHNRIIKSRLGLDSFV 514
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
LI Y+ + +K+ D++ ++ +WNA+I+G+ Q + + A F M
Sbjct: 515 GIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE-----AQKTFSKM 569
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
L GV P + T +L + L +E G +H + K ++D +I + LVDMYSK
Sbjct: 570 LE--MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKEL--QSDAYISSTLVDMYSK 625
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG + + LIF + ++ +TW AM G A HG G EA+++ + M+ VKPN TF ++
Sbjct: 626 CGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAV 685
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC H GLVE+GLH F +M S +G++P ++HYSC+VD++GR+G + +A I G+P +
Sbjct: 686 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEA 745
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
DA++WR+LLS C +HG+V + EK +LQL+PE S +V LSNIYA+A W
Sbjct: 746 DAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPE--------DSAAYVLLSNIYANAGMW 797
Query: 447 PDVESVRKQMKVKRVETEPGSSILQTTTH 475
+V +RK M+ ++ EPG S ++ +
Sbjct: 798 NEVTKLRKMMRFNGLKKEPGCSWIEIKSE 826
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 16/301 (5%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
FD T+ L SC+ SL G QIH K GF +V+ + L+ YA K +
Sbjct: 172 FDRTTFAVVLKSCS---SLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCS 228
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+ F MP ++ +W+A+I G C Q+ + L LF++M +GV + +T V
Sbjct: 229 IQFFHSMPEKNWVSWSAIIAG-CVQNDDLR----GGLELFKEM--QKAGVGVSQSTFASV 281
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+ L L G+ +HG+ KT + DV IGTA +DMY KC L +A +F+ +
Sbjct: 282 FRSCAGLSALRLGSQLHGHALKTDF--GTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNH 339
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N+ ++ A+ G A KG EA+ + ++ G+ + V+ + F AC EGL +
Sbjct: 340 NLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVH 399
Query: 344 D-NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+MKS + +I + I+D+ G+ G L EA + + DA+ W ++++A +G
Sbjct: 400 GLSMKSL--CQSNICVANAILDMYGKCGALVEAC-LVFEEMVSRDAVSWNAIIAAHEQNG 456
Query: 403 D 403
+
Sbjct: 457 N 457
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 151/312 (48%), Gaps = 18/312 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ SCA LS L LG Q+H H K F +V++ T + Y ++S +K+F
Sbjct: 277 TFASVFRSCA---GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ +P + ++NA+I GY K AL +FR L+ SG+ + ++
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDK-----GIEALGMFR--LLQKSGLGLDEVSLSGAFRAC 386
Query: 228 SQL-GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ + G LE G VHG K+ + ++++ + A++DMY KCG L A L+F M ++ +
Sbjct: 387 AVIKGDLE-GLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAV 443
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN- 345
+W A+ +G + + L M G++P+ T+ S+ AC + G+ + +
Sbjct: 444 SWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI 503
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
+KS+ G++ + ++D+ + G +E+A + + + W +++S ++
Sbjct: 504 IKSRLGLDSFVG--IALIDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSE 560
Query: 406 LGEKVGKILLQL 417
+K +L++
Sbjct: 561 EAQKTFSKMLEM 572
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 124/281 (44%), Gaps = 29/281 (10%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q H + F V V LI Y D+ KVFD MP R + +WNAM+ GY
Sbjct: 61 GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120
Query: 188 Q-----SKKAKDC-------AFNALVLF------RDMLVDV------SGVKPTDTTMVCV 223
+ ++K D ++N+L+ ++DV G TT V
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L S L G +HG K + + DV G+AL+DMY+KC LD ++ F M EK
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGF--DCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N ++W+A+ G + + L M+ GV + TF S+F +C + G L
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLH 298
Query: 344 DN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ +K+ +G + I + +D+ + +L +A +P
Sbjct: 299 GHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQKLFNSLP 337
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 23/227 (10%)
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
KPT C++ + + LEF V M P+ D A++ Y+ G + A
Sbjct: 74 KPTVFVTNCLIQMYIKCSDLEFAFKVFDGM------PQRDTVSWNAMLFGYAGRGDIGVA 127
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-- 331
+F M E++V++W ++ +G +G + I + M G + TF + +C
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSL 187
Query: 332 --HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
H G ++ +H + K G + + S ++D+ + L+ + F +P K + +
Sbjct: 188 EDHGGGIQ--IH---GLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK-NWV 241
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
W ++++ C + D+ G L+L E+ V + F ++
Sbjct: 242 SWSAIIAGCVQNDDLRGG-------LELFKEMQKAGVGVSQSTFASV 281
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 244/460 (53%), Gaps = 38/460 (8%)
Query: 24 IKQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTK--IVHFVFTHFDP-----PNL 74
I +I A L+T+ L +S L+ LI+ + + PQ+ H + P P+L
Sbjct: 36 IARIQAALVTSGLLRRSAELHDALIRAHASS-GRPQAALPLYAHLIRAGLFPTPHTLPSL 94
Query: 75 FLFNTLIRCTPPQD--SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
L P ++ V A+ V GL F L + LGR
Sbjct: 95 LKSLALSPAVPGARRLALAVHAHAVRLGLAGF--------LLVNNALIRVHAGLLGRLAD 146
Query: 133 VHVTKR-GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H+ R + TLI +A ++ + +FD+MP R++ +W+AM+NGY Q+
Sbjct: 147 AHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYV-QAGD 205
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
++ AL +F M GV+P DT +V VL+ +QLG LE G VHGY++
Sbjct: 206 GRE----ALGVFSQM--QAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNI--R 257
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
VF+GTALVDMY+KCG + + +F M++KNVL WT M G+A+HG+G++++ L M
Sbjct: 258 MTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQM 317
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GVKP+ + F AC H GLV++G LF++M + +G++P I+HY C+VDLL R G
Sbjct: 318 ESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGL 377
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L EA + + +P+KPDA++W +L++ C H +V L E V K ++L+P+ S
Sbjct: 378 LSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPD--------KSG 429
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V L NIY+++ R +R M+ K VE PG S ++
Sbjct: 430 AYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVE 469
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 252/465 (54%), Gaps = 30/465 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + P+ + Q A L+ + L + PL + A +V + P +
Sbjct: 49 LERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLVPSVPIDA 108
Query: 75 FLFNTLIRC---TPPQDSVLVFAYWVSKGLLTF---DDFTYVFALGSCARFCSLSTLWLG 128
FL NTLIR +P + L A + L + + FT+ F L +CA F + G
Sbjct: 109 FLANTLIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACAAFPGV-----G 163
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q H K GF + V+ TLIH Y+ + + + VFD+M S+ TW+AMI GY
Sbjct: 164 VQAHAAALKFGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTWSAMIGGYV 223
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ +A+ LFR+M SGV+P + TM+ VL+ ++ LG LE V ++EK
Sbjct: 224 RSGLSS-----DAVGLFREM--QASGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKE 276
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
V + AL+D +KCG LD A+ +F M+E+ +++WT++ +A+ G+G EA+
Sbjct: 277 GI--GKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVIDALAMEGRGKEAVA 334
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ + M+ GV+P+ V F + AC HAG+V+EG F++M+ +G++P I+HY C+VD+
Sbjct: 335 VFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMF 394
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG +E A F+ +P+KP+ I+WR+L++AC HG + LGE + + LL P
Sbjct: 395 GRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLELGETITRNLLNEYP------- 447
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++V LSN+YA RW + +R++M + ++ PG S+++
Sbjct: 448 -AHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVE 491
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 245/442 (55%), Gaps = 49/442 (11%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF ++ +N LI +C +D+V VF + L ++ T V L +C
Sbjct: 189 VFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSAC---I 245
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L L LG++IH +V ++ F + + L+ Y +S +++F+ MP+++ W +
Sbjct: 246 ALKMLELGKEIHRYVREQ-LGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTS 304
Query: 181 MINGY--CSQSKKAKD--------------------CAFN----ALVLFRDMLVDVSGVK 214
M++GY C Q +A++ FN A+ LFR+M + V
Sbjct: 305 MVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREM--QIKRVS 362
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P T+V +L+ +QLG LE G +HGY+++ M D +GTAL++MY+KCG ++ +L
Sbjct: 363 PDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMI--DAVVGTALIEMYAKCGFIEKSL 420
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
IF+ ++EK+ +WT++ G+A++GK ++A+ L M GVKP+ +TF + +AC H G
Sbjct: 421 EIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGG 480
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI---LW 391
LVEEG F +M + + +EP ++HY C++DLLGRAG L+EA I P + + L+
Sbjct: 481 LVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLY 540
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
+LLSAC HG+V +GE+V K L+ ++ + S L+NIYASA+RW DV
Sbjct: 541 GALLSACRTHGNVEMGERVAKRLVGIE--------SGDSSVHTLLANIYASADRWEDVTK 592
Query: 452 VRKQMKVKRVETEPGSSILQTT 473
VR++MK V+ PG S ++
Sbjct: 593 VRRKMKDLGVKKVPGCSSVEVN 614
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 117/459 (25%), Positives = 208/459 (45%), Gaps = 64/459 (13%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + H+KQI Q++ + CT S + +F + D P L
Sbjct: 39 LKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTD-PSIGNLHYAERIFNYIDIPGL 97
Query: 75 FLFNTLIRCTPPQDS----VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F++N +I+ S VL+F +GL + D+FTY F + L + G +
Sbjct: 98 FIYNLVIKAFTKNGSFRKAVLLFRQLREEGL-SPDNFTYPFVFKAIG---CLGEVREGEK 153
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
++ V K G F+ V +L+ YA + + ++VF++MP R +WN +I+GY C +
Sbjct: 154 VYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRR 213
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ A D +FR M S ++P + T+V LS L +LE G +H Y+ +
Sbjct: 214 YEDAVD-------VFRRMQ-QQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLG 265
Query: 249 MPENDVFIGTALVDMYSKCG------------------C-------------LDNALLIF 277
+ IG ALVDMY KCG C LD A +F
Sbjct: 266 FT---IKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELF 322
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
R ++V+ WTAM G + ++A+ L M+ V P+ T +L C G +E
Sbjct: 323 ERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLE 382
Query: 338 EG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+G +H + + ++K ++ + + ++++ + G +E++ G+ K D W S++
Sbjct: 383 QGKWIHGYID-ENKIMIDAVVG--TALIEMYAKCGFIEKSLEIFNGLKEK-DTASWTSII 438
Query: 396 SACNVHGDVALGEKVGKILLQ--LQP-EVTFVDV--ACT 429
++G + ++ ++Q ++P ++TF+ V AC+
Sbjct: 439 CGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACS 477
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 219/389 (56%), Gaps = 20/389 (5%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++ L W+ + + D+FTY L +CA + +L+ G +IH + K + V
Sbjct: 395 EEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNC---GMEIHNRIIKSRMGLDSFV 451
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
LI Y+ + +K+ D++ ++ +WNA+I+G+ Q + + A F M
Sbjct: 452 GIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEE-----AQKTFSKM 506
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
L GV P + T +L + L +E G +H + K ++D +I + LVDMYSK
Sbjct: 507 LE--MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKEL--QSDAYISSTLVDMYSK 562
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG + + LIF + ++ +TW AM G A HG G EA+++ + M+ VKPN TF ++
Sbjct: 563 CGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAV 622
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC H GLVE+GLH F +M S +G++P ++HYSC+VD++GR+G + +A I G+P +
Sbjct: 623 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEA 682
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
DA++WR+LLS C +HG+V + EK +LQL+PE S +V LSNIYA+A W
Sbjct: 683 DAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPE--------DSAAYVLLSNIYANAGMW 734
Query: 447 PDVESVRKQMKVKRVETEPGSSILQTTTH 475
+V +RK M+ ++ EPG S ++ +
Sbjct: 735 NEVTKLRKMMRFNGLKKEPGCSWIEIKSE 763
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 160/360 (44%), Gaps = 22/360 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
+F NL +N +I D L + K L D+ + A +CA
Sbjct: 269 LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACA---V 325
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
+ G Q+H K N+ VA ++ Y + VF++M R + +WNA+
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 385
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I + + K L LF ML SG++P + T VL + L G +H
Sbjct: 386 IAAHEQNGNEEK-----TLSLFVWML--QSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 438
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K+ D F+G AL+DMYSKCG ++ A + R+ E+ V++W A+ +G ++ +
Sbjct: 439 RIIKSRMGL--DSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQS 496
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYS 360
EA + M + GV P+ T+ ++ C + VE G + +K + + +I S
Sbjct: 497 EEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS--S 554
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+VD+ + G++++ + I D + W +++ HG LGE+ KI +Q E
Sbjct: 555 TLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVCGYAQHG---LGEEALKIFEYMQLE 610
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 140/291 (48%), Gaps = 16/291 (5%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISS-GKKVFDQMPMRSSATWNAMINGYCSQ 188
Q+H H K F +V++ T + Y ++S ++F+ +P + ++NA+I GY
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL-GLLEFGACVHGYMEKTF 247
K AL +FR L+ SG+ + ++ + + G LE G VHG K+
Sbjct: 292 DK-----GIEALGMFR--LLQKSGLGLDEVSLSGAXRACAVIKGDLE-GLQVHGLSMKS- 342
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ ++++ + A++DMY KCG L A L+F M ++ ++W A+ +G + + L
Sbjct: 343 -LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSL 401
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLL 366
M G++P+ T+ S+ AC + G+ + + +KS+ G++ + ++D+
Sbjct: 402 FVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVG--IALIDMY 459
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
+ G +E+A + + + W +++S ++ +K +L++
Sbjct: 460 SKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 509
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 133/340 (39%), Gaps = 70/340 (20%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q H + F V V LI Y D+ KVFD MP R + +WNAM+ GY
Sbjct: 61 GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120
Query: 188 QSK-KAKDCAFNAL-------VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+ F+A+ V D + G TT VL S L G +
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 180
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN-----ALLIFSRMREK----------- 283
HG K + + DV G+AL+DMY+KC C+ N L +F M++
Sbjct: 181 HGLAVKMGF--DCDVVTGSALLDMYAKC-CVQNDDLRGGLELFKEMQKAGVGALQLHGHA 237
Query: 284 ---------------------------------------NVLTWTAMATGMAIHGKGNEA 304
N+ ++ A+ G A KG EA
Sbjct: 238 LKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEA 297
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD-NMKSKWGVEPHIKHYSCIV 363
+ + ++ G+ + V+ + AC EGL + +MKS + +I + I+
Sbjct: 298 LGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSL--CQSNICVANAIL 355
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D+ G+ G L EA + + DA+ W ++++A +G+
Sbjct: 356 DMYGKCGALVEAC-LVFEEMVSRDAVSWNAIIAAHEQNGN 394
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 172/500 (34%), Positives = 253/500 (50%), Gaps = 72/500 (14%)
Query: 24 IKQIHAQLITNALKSPPLYAQ------LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
IK IH T+ LKSP L+ + LY ++ S + VF P L ++
Sbjct: 35 IKIIH----THILKSPILHTRDQYYLFTRLLYFCSFSNYASFNYANNVFHMIKYPELRVY 90
Query: 78 NTLIR---CTPPQD-------SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
N +IR C D +++++ ++KG++ ++ T+ F + C+R T+
Sbjct: 91 NIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVP-NNLTFPFLVKGCSRLQYGGTV-- 147
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G IH HV K GF+ +V V +LI + + + +KVFD+M +R +WN+M+ GY
Sbjct: 148 GEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLR 207
Query: 188 QSKKAKDCAFNALVLFRDM--------------LVD----------------VSG---VK 214
+ AL LFR M LV +SG VK
Sbjct: 208 NGEVEM-----ALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVK 262
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P T+ VLS + LG ++ G VH Y+ K E DV IGTALV+MY KCG + A+
Sbjct: 263 PDKITIASVLSACALLGSIDHGKWVHAYLRKNDI--ECDVVIGTALVNMYGKCGDVQQAI 320
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
IF+ M EK+ WTAM + A+HG G +A M GVKPN VTF L +AC H+G
Sbjct: 321 EIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSG 380
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LVE+G FD MK + +EP I HY+C+VD+L RA +EA I +P+KPD +W +L
Sbjct: 381 LVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGAL 440
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L C +HG++ LGEKV L+ L+P ++ L +IY A ++ + +R
Sbjct: 441 LGGCQMHGNIKLGEKVAHYLIDLEPH--------NHAFYINLCDIYVKAGKYDAAKRIRN 492
Query: 455 QMKVKRVETE-PGSSILQTT 473
MK + +ET+ PG SI++
Sbjct: 493 SMKERGIETKIPGCSIIEIN 512
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/538 (29%), Positives = 273/538 (50%), Gaps = 90/538 (16%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTK 60
L P H A+ L+ P + Q+H LI T+ +K + +L+ + AS +
Sbjct: 28 LRKPDH---AISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSF----ASFDNLG 80
Query: 61 IVHFVFTHFD----PPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTF-DDFTYVF 111
+++ FD P N F++ T+I+ P+++ ++ + + +DFT+ +
Sbjct: 81 SLNYAQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTY 140
Query: 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--------------- 156
+C++F + ++ G+Q H + K F F V +L+ FY
Sbjct: 141 VFSACSKF---NGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKI 197
Query: 157 -----------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK-DCAFN 198
+ D+ +++FD+MP R +W M+ GY ++ C F+
Sbjct: 198 EGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFD 257
Query: 199 -------------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
AL LF++M V+ VK + + +LS ++LG L
Sbjct: 258 EMPKRNLVSWSALIKGYIQIGCYSKALELFKEM--QVAKVKMDEVIVTTLLSACARLGAL 315
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+ G +H Y++K + + D + TAL+DMYSKCG +D A +F +K V W++M
Sbjct: 316 DQGRWLHMYIDK--HGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIG 373
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G+A+H G +AI L M +CG++P+ +T+ ++ AAC H+GLV+ GL +F+ M +
Sbjct: 374 GLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPK 433
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P ++HY CIVDLLGRAG L +A+ + +P+K D +WR+LLSAC +H +V LGE+VG+I
Sbjct: 434 PRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRI 493
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L++++P+ ++V SN+YA+ RW +R++MKV+ ++ PG S ++
Sbjct: 494 LIKMEPQ--------NDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIE 543
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/464 (33%), Positives = 254/464 (54%), Gaps = 28/464 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA----QLIQLYCTKKASPQSTKIVHFVFTHFD 70
L ++ +H+ +IHAQ++ + L++ + ++ L ++ S + + H F
Sbjct: 37 LNHCSSTNHLFEIHAQILVSGLQNDSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSAT 96
Query: 71 PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
P F+ PQ+++ +F +G+ ++ T+ F L +CA +L+TL G+Q
Sbjct: 97 MPWNFIIRGYSSSDSPQEAISLFGEMRRRGVRP-NNLTFPFLLKACA---TLATLQEGKQ 152
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H K G +V V TLI+FY S K +S +KVFD+M R+ +WNA+I C ++
Sbjct: 153 FHAIAIKCGLDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITA-CVENF 211
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
C A+ F M G +P +TTMV +LS ++LG L G VH + +
Sbjct: 212 ----CFDEAIDYFLKM--GNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVL 265
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+V +GTA VDMY+K G + A +F+ +++K+V TW+AM G+A HG NEAI L +
Sbjct: 266 --NVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTN 323
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M + PN VTF + AC HAGLV++ H F+ M+ +G++P + HY +VD+LGRAG
Sbjct: 324 MMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLMERVYGIKPMMIHYGSMVDVLGRAG 383
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSAC---NVHGDVALGEKVGKILLQLQPEVTFVDVA 427
++EAY IM +P++PD I+WR+LLSAC +V+G + E+ K LL+L+P+
Sbjct: 384 QVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGAEVAEEARKRLLELEPK------- 436
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ V ++N +A W R+ MK + ++ G S ++
Sbjct: 437 -RGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIE 479
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 170/489 (34%), Positives = 253/489 (51%), Gaps = 60/489 (12%)
Query: 26 QIHAQLITNALKSPPLY--AQLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
QIH LI + S +Y + L+ +Y C AS Q F D N+ +N+LI
Sbjct: 172 QIHG-LIAKSRYSLDVYMGSALVDMYSKCRVVASAQRA------FDDMDVRNIVSWNSLI 224
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
C P ++ VF ++ G+ D+ T +CA SLS + G QIH V K
Sbjct: 225 TCYEQNGPAGKALEVFVRMMNCGIEP-DEITLASVASACA---SLSAIREGLQIHARVMK 280
Query: 138 RGFMFNVLV-ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDC 195
N LV L+ YA + ++ + VFD+MP+R + +M++GY S KA
Sbjct: 281 HDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARL 340
Query: 196 AF-----------NALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
F NAL+ LF +L+ + PT T +L+ + L
Sbjct: 341 MFSNMMERNVVSWNALIAGYTQNGENEEAVRLF--LLLKRESIWPTHYTFGNLLNACANL 398
Query: 231 GLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
L+ G H ++ K + ++D+F+G +L+DMY KCG +++ L+F RM E++ +
Sbjct: 399 ADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNV 458
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W AM G A +G G EA+ + M G +P+ VT + +AC HAGLVEEG F +M
Sbjct: 459 SWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSM 518
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ G+ P HY+C+VDLLGRAG L+EA N I +P++PDA++W SLL+AC VHG++ L
Sbjct: 519 TIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITL 578
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
G+ V + LL++ P S +V LSN+YA RW DV VRKQM+ V +PG
Sbjct: 579 GKYVAERLLEIDP--------LNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPG 630
Query: 467 SSILQTTTH 475
S + +H
Sbjct: 631 CSWISIQSH 639
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 104/456 (22%), Positives = 189/456 (41%), Gaps = 91/456 (19%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN----- 78
+ +HA++I S + +L+ +Y + K VF H N F +N
Sbjct: 39 RLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARK----VFDHMQQRNTFSWNAVLGA 94
Query: 79 -----------TLIRCTPPQD------------------SVLVFAYWVSKGLLTFDDFTY 109
L +C P +D L F + +++++
Sbjct: 95 LTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSF 154
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
AL +CA LS +G QIH + K + +V + + L+ Y+ + ++S ++ FD
Sbjct: 155 GSALSACAGLMDLS---IGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDD 211
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
M +R+ +WN++I Y K AL +F M+ G++P + T+ V S +
Sbjct: 212 MDVRNIVSWNSLITCYEQNGPAGK-----ALEVFVRMM--NCGIEPDEITLASVASACAS 264
Query: 230 LGLLEFGACVHG-YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--------- 279
L + G +H M+ Y ND+ +G ALVDMY+KC ++ A L+F R
Sbjct: 265 LSAIREGLQIHARVMKHDKY--RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSE 322
Query: 280 ----------------------MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
M E+NV++W A+ G +G+ EA+RL ++ +
Sbjct: 323 TSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIW 382
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-----KWGVEPHIKHYSCIVDLLGRAGHL 372
P TF +L AC + ++ G ++ K G + I + ++D+ + G +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442
Query: 373 EEAYNFIMGIPIKPDAILWRSLL--SACNVHGDVAL 406
E+ + ++ D + W +++ A N +G AL
Sbjct: 443 EDG-RLVFERMLERDNVSWNAMIVGYAQNGYGTEAL 477
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 147/323 (45%), Gaps = 31/323 (9%)
Query: 100 GLLTF-DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158
G L+F D + L +C + +++ R +H + K F + + L+ Y
Sbjct: 12 GDLSFLDSSPFAKLLDTCVKS---KSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCG 68
Query: 159 DISSGKKVFDQMPMRSSATWNAMIN-----GYCSQS-------KKAKDCAFNALV----- 201
+ +KVFD M R++ +WNA++ G ++ + C++NA+V
Sbjct: 69 FLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQ 128
Query: 202 --LFRDMLVDVSGVKPTDTTMV-----CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
F + L V + D + LS + L L G +HG + K+ Y DV
Sbjct: 129 RDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSL--DV 186
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
++G+ALVDMYSKC + +A F M +N+++W ++ T +G +A+ + M +C
Sbjct: 187 YMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G++P+ +T S+ +AC + EGL + + + + +VD+ + + E
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNE 306
Query: 375 AYNFIMGIPIKPDAILWRSLLSA 397
A +P++ D + S++S
Sbjct: 307 ARLVFDRMPLR-DVVSETSMVSG 328
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 59/274 (21%)
Query: 235 FGACVHGYME---KTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
+G C G++E K F +M + + F A++ +K G LD AL +F M E++ +W A
Sbjct: 64 YGKC--GFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNA 121
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE--GLHLFDNM-K 347
M +G A + EA+R + M N +F S +AC AGL++ G+ + + K
Sbjct: 122 MVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSAC--AGLMDLSIGVQIHGLIAK 179
Query: 348 SKWGVEPHIKHYSCIVDLL----------------------------------GRAGHLE 373
S++ ++ ++ S +VD+ G AG
Sbjct: 180 SRYSLDVYMG--SALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKAL 237
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
E + +M I+PD I S+ SAC + G LQ+ V D D
Sbjct: 238 EVFVRMMNCGIEPDEITLASVASACASLSAIREG-------LQIHARVMKHDK--YRNDL 288
Query: 434 V---ALSNIYASAERWPDVESVRKQMKVKRVETE 464
V AL ++YA R + V +M ++ V +E
Sbjct: 289 VLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSE 322
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/372 (37%), Positives = 208/372 (55%), Gaps = 20/372 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+T ++ T L +C +L T G+ +H +R N++V L+ Y + +
Sbjct: 212 VTPNEVTLASVLVACG---NLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLD 268
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
++VFD + R +W MI+G Q K+ + AL +F M +SGVKP +
Sbjct: 269 LARRVFDMLLARDIVSWTVMISGLV-QCKRPSE----ALEVFNAM--QISGVKPDKVVLS 321
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
VLS + LG LE G VH Y+E+ E DV +GT++VDMY KCGCLD A+ IF M
Sbjct: 322 TVLSACASLGALESGRWVHEYIERKGI--EWDVHVGTSVVDMYVKCGCLDTAVSIFQEMP 379
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
KNV +W A+ G A+HG+G EA+ D M G+ PN VTF ++ ACCH+GLV+EG
Sbjct: 380 LKNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQ 439
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF+ M + + P HY C+VDLLGRAG ++EAY+ I +P++P W +LLSAC H
Sbjct: 440 LFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAH 499
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G + +++ + +L+ + +V LSN+YA ++RW DV R M K +
Sbjct: 500 GRMDFSQQILMHIHELESSGNGI--------YVLLSNMYAVSDRWADVGKARGFMNEKGM 551
Query: 462 ETEPGSSILQTT 473
+ EPGSS+++
Sbjct: 552 QKEPGSSVIEVN 563
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 148/298 (49%), Gaps = 16/298 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D +T AL +CAR L G Q H K GF+ V V L+ FY + +
Sbjct: 116 DGYTLPAALKACARLGG--GLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDAR 173
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVFD+M R +W A+++ + AL + +M V P + T+ VL
Sbjct: 174 KVFDEMAERDVVSWTALLSAFTRGGM-----FMEALGVLAEM-----DVTPNEVTLASVL 223
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
LG G VHG+ + E ++ +G AL+DMY KC LD A +F + ++
Sbjct: 224 VACGNLGTARAGKAVHGWYFRR--EKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARD 281
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+++WT M +G+ + +EA+ + ++M+ GVKP+ V +++ +AC G +E G + +
Sbjct: 282 IVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHE 341
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++ K G+E + + +VD+ + G L+ A + +P+K + W +L++ +HG
Sbjct: 342 YIERK-GIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLK-NVSSWNALINGFALHG 397
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/474 (32%), Positives = 256/474 (54%), Gaps = 26/474 (5%)
Query: 5 PGHRCFALLKLKAITTPSHI--KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKI 61
P + LL L S + +++H L+ N P A +LI +Y + + K
Sbjct: 68 PAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARK- 126
Query: 62 VHFVFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC-A 117
VF ++++N L R + VL ++ + D FTY + L +C A
Sbjct: 127 ---VFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVA 183
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
C +S L GR+IH H+ + G+ V + TTL+ YA +S+ VF+QMP+++ +
Sbjct: 184 SECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVS 243
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
W+AMI Y K AF AL LFR+++++ + P TMV VL + L LE G
Sbjct: 244 WSAMIACYAKNGK-----AFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGR 298
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HGY+ + ++ + + +ALV MY++CG L+ +F +M +++V++W ++ + +
Sbjct: 299 LIHGYILRKGL--DSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGV 356
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG G +AI + + M GV+P+ ++F S+ AC HAGLV+EG LF++M G+ P ++
Sbjct: 357 HGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVE 416
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY+C+VDLLGRA LEEA I + I+P +W SLL +C +H +V L E+ L L
Sbjct: 417 HYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDL 476
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+P + ++V L++IYA A W V+ V+K ++ + ++ PG S ++
Sbjct: 477 EP--------TNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIE 522
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ A+ CA ++ + G QIH + G+ +V + L++ YA I
Sbjct: 445 DNIGLASAISGCA---GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
F+++ + TWN +++G+ +QS ++ AL +F M +D SGVK T V L
Sbjct: 502 SSFEEIEHKDEITWNGLVSGF-AQSGLHEE----ALKVF--MRMDQSGVKHNVFTFVSAL 554
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S S+ L ++ G +H + KT + E +V G AL+ +Y KCG ++A + FS M E+N
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEV--GNALISLYGKCGSFEDAKMEFSEMSERN 612
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W + T + HG+G EA+ L D M+ G+KPN VTF + AAC H GLVEEGL F
Sbjct: 613 EVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFK 672
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M ++G+ P HY+C++D+ GRAG L+ A FI +PI DA++WR+LLSAC VH ++
Sbjct: 673 SMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNI 732
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GE K LL+L+P S +V LSN YA E+W + + VRK M+ + V E
Sbjct: 733 EVGEFAAKHLLELEPH--------DSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKE 784
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 785 PGRSWIE 791
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 22/364 (6%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S ++ VF + FNTLI +C + ++ +F GL + D T L
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL-SPDCVTISSLL 251
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA SL L G Q+H ++ K G + ++ +L+ Y D+ + +F+
Sbjct: 252 AACA---SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ WN M+ + + AK + LF M +G++P T C+L + +
Sbjct: 309 NVVLWNLMLVAFGQINDLAK-----SFELFCQM--QAAGIRPNQFTYPCILRTCTCTREI 361
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+ G +H KT + E+D+++ L+DMYSK G L+ A + ++EK+V++WT+M
Sbjct: 362 DLGEQIHSLSVKTGF--ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIA 419
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G H +A+ M+ CG+ P+ + S + C + +GL + + G
Sbjct: 420 GYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-GYS 478
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
+ ++ +V+L R G + EA++ I K D I W L+S G L E+ K+
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLVSGFAQSG---LHEEALKV 534
Query: 414 LLQL 417
+++
Sbjct: 535 FMRM 538
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH RG +V LI Y+ N + ++VF+++ R + +W AM++GY
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL L+R M +GV PT + VLS ++ L G +H K +
Sbjct: 123 -----LGEEALGLYRQM--HRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFC 175
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E +F+G A++ +Y +CG A +F M ++ +T+ + +G A G G A+ + +
Sbjct: 176 SE--IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M+ G+ P+ VT +SL AAC G +++G L + K G+ ++DL +
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYL-FKAGISSDYIMEGSLLDLYVKC 292
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
G +E A I + + +LW +L A D+A
Sbjct: 293 GDVETAL-VIFNSSDRTNVVLWNLMLVAFGQINDLA 327
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 16/294 (5%)
Query: 111 FALGSCARFCSLSTLWL-GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ L S C+ + L+ GR IH K GF + V +I Y ++VF
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203
Query: 170 MPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
MP R + T+N +I+G+ C + +AL +F +M SG+ P T+ +L+
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGE-------HALEIFEEM--QFSGLSPDCVTISSLLAAC 254
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG L+ G +H Y+ K +D + +L+D+Y KCG ++ AL+IF+ NV+
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGI--SSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W M ++ L M+ G++PN T+ + C ++ G + ++
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH-SLS 371
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
K G E + ++D+ + G LE+A ++ + + D + W S+++ H
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAGYVQH 424
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 166/503 (33%), Positives = 254/503 (50%), Gaps = 69/503 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPPNLFLFNTL 80
+KQI AQ+I A+ + P A CT SP +++ VF PN F++N +
Sbjct: 3 QLKQIQAQMIKTAIITEPKLATKFLTLCT---SPHVGDLLYAQRVFNGITSPNTFMWNAI 59
Query: 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
IR P+ + L + +S + + +T+ F L +C ++ Q+H V
Sbjct: 60 IRAYSNSDEPELAFLSYQQMLSSSV-PHNSYTFPFLLRACRNLLAMGE---ALQVHGLVI 115
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K GF +V L+H YA +I +++FD +P R + +WN MI+GY K+ D
Sbjct: 116 KLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYI----KSGDVK 171
Query: 197 FNALVLFRDM--------------LVDV---------------SGVKPTDTTMVCVLSVS 227
A +F DM LV+ +G + + +L+
Sbjct: 172 -TAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTAC 230
Query: 228 SQLGLLEFGACVHGYMEKTFYMPEN----DVFIGTALVDMYSKCGCLDNALLIFSRMR-- 281
+ LG L+ G +H FY+ N D IG ALV+MY KCG ++ AL +F +++
Sbjct: 231 ANLGALDQGRWLH------FYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGN 284
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+K+V WTAM G AIHG+G EA+ + MR G++PN++TFT++ AC + GLVEEG
Sbjct: 285 QKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKE 344
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF +MK + V P I+HY C+VDLLGR+G L+EA I +P+KP A++W +LL AC +H
Sbjct: 345 LFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIH 404
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
D LG +VG L+++ + S ++ L+ I A+ +W + VR +MK V
Sbjct: 405 RDFLLGSQVGAHLVEVDSD--------HSGRYIQLATILAAEGKWKEAAEVRLKMKSLGV 456
Query: 462 ETEPGSS--ILQTTTHYTLDGFR 482
PG S L H L G +
Sbjct: 457 PISPGKSSVTLNGIVHEFLAGHQ 479
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/482 (31%), Positives = 243/482 (50%), Gaps = 46/482 (9%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ IKQ HA+++ L + + + +S + ++ P +F N +I
Sbjct: 45 TQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMI 104
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
RC P+ S+ ++++ + + T F L +C+ ++ G Q+ HV K
Sbjct: 105 RCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIRE---GAQVQTHVIK 161
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSSATWNAMINGYC-----SQSKK 191
GF+ +V V LIH Y + + S K+VFD++P R +WN+MI G+ S ++K
Sbjct: 162 LGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQK 221
Query: 192 ------AKD----------CAFN-----ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
KD C N AL F+++ ++P + +V +L+ ++QL
Sbjct: 222 LFVEMPEKDVISWGTIISGCVQNGELEKALDYFKEL--GEQKLRPNEAILVSLLAAAAQL 279
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G LE+G +H + + P +GTALVDMY+KCGC+D + +F RM EK+ +W
Sbjct: 280 GTLEYGKRIHS-IANSLRFPMT-ASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNV 337
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
M G+A HG G EA+ L + G P VTF + AC AGLV EG H F M +
Sbjct: 338 MICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTY 397
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G+EP ++HY C+VDLL RAG + +A I +P PD +LW S+L +C VHG + LGE++
Sbjct: 398 GIEPEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEI 457
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
G L+Q+ P + +V L+ I+A +W DV VR+ M + G S++
Sbjct: 458 GNKLIQMDP--------THNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLI 509
Query: 471 QT 472
+
Sbjct: 510 EA 511
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 215/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT L +CAR SLS G++IH + + GF + + +L+ Y I K
Sbjct: 501 DLFTIASLLSACARLKSLSC---GKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAK 557
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
FD M ++ WN MING+ SQ+ + F+AL +F ML S + P + +++ L
Sbjct: 558 LFFDNMEEKNLVCWNTMINGF-SQN----EFPFDALDMFHQMLS--SKIWPDEISIIGAL 610
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
SQ+ L G +H + K+ ++ E+ F+ +L+DMY+KCGC++ + IF R+ K
Sbjct: 611 GACSQVSALRLGKELHCFAVKS-HLTEHS-FVTCSLIDMYAKCGCMEQSQNIFDRVHLKG 668
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW + TG IHG G +AI L SM++ G +P++VTF +L AC HAGLV EGL
Sbjct: 669 EVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLG 728
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+S +G++P ++HY+C+VD+LGRAG L EA + +P KPD+ +W SLLS+C + D+
Sbjct: 729 QMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDL 788
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GEKV LL+L P+ +E++V +SN YA +W +V +R++MK ++ +
Sbjct: 789 DIGEKVANKLLELGPD--------KAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKD 840
Query: 465 PGSSILQ 471
G S ++
Sbjct: 841 AGCSWIE 847
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 172/399 (43%), Gaps = 64/399 (16%)
Query: 64 FVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARF 119
VF NLFL+N L+ R + +D+V VF +S D+FT + +C
Sbjct: 150 LVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACV-- 207
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+ + LG +H K + +V V LI Y + S KVFD+MP R+ +WN
Sbjct: 208 -GVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWN 266
Query: 180 AMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+++ NG +S LF+ +L G+ P TMV V+ + ++ G +
Sbjct: 267 SVMYACLENGVFEESYG----------LFKGLLNGDEGLMPDVATMVTVIPLCARQGEVR 316
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G HG K E + + ++L+DMYSKCG L A ++F EKNV++W +M G
Sbjct: 317 LGMVFHGLALKLGLCGE--LKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGG 373
Query: 295 MAIHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAAC-----------CHAGLVEEGLHL 342
+ A LL M+ + VK N VT ++ C H + G
Sbjct: 374 YSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQ 433
Query: 343 FDNMKSKWGVEPHIK----HYS----CIVD---------LLGRAGHLEEA--------YN 377
D + + V + K HY+ C ++ L+G GH++ Y
Sbjct: 434 SDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIG--GHVQNGFPRKALDLYL 491
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
+ G ++PD SLLSAC ++ G+++ +L+
Sbjct: 492 LMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLR 530
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 161/344 (46%), Gaps = 39/344 (11%)
Query: 127 LGRQIHVHV-TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+GR+IH + T F +V++ T L+ Y+ VF+ ++ WNA+++GY
Sbjct: 111 IGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGY 170
Query: 186 CSQSKKAKDCAFNALVLFRDM------LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
S LFRD ++ ++ P + T+ CV+ + + G V
Sbjct: 171 LRNS------------LFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG+ KT + +DVF+G AL+ MY K G +++A+ +F +M ++N+++W ++ +G
Sbjct: 219 HGFALKTKVL--SDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276
Query: 300 KGNEAIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
E+ L + D G+ P+ T ++ C G V G+ +F + K G+ +K
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELK 335
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
S ++D+ + G+L EA ++ + + I W S++ + D ++L ++
Sbjct: 336 VNSSLLDMYSKCGYLCEAR--VLFDTNEKNVISWNSMIGGYSKDRDF---RGAFELLRKM 390
Query: 418 Q-------PEVTFVDV--ACTSE-DFVALSNIYASAERWPDVES 451
Q EVT ++V C E F+ L I+ A R ++S
Sbjct: 391 QMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQS 434
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ A+ CA ++ + G QIH + G+ +V + L++ YA I
Sbjct: 445 DNIGLASAISGCA---GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
F+++ + TWN +++G+ +QS ++ AL +F M +D SGVK T V L
Sbjct: 502 SSFEEIEHKDEITWNGLVSGF-AQSGLHEE----ALKVF--MRMDQSGVKHNVFTFVSAL 554
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S S+ L ++ G +H + KT + E +V G AL+ +Y KCG ++A + FS M E+N
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEV--GNALISLYGKCGSFEDAKMEFSEMSERN 612
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W + T + HG+G EA+ L D M+ G+KPN VTF + AAC H GLVEEGL F
Sbjct: 613 EVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFK 672
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M ++G+ P HY+C++D+ GRAG L+ A FI +PI DA++WR+LLSAC VH ++
Sbjct: 673 SMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNI 732
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GE K LL+L+P S +V LSN YA E+W + + VRK M+ + V E
Sbjct: 733 EVGEFAAKHLLELEPH--------DSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKE 784
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 785 PGRSWIE 791
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 22/364 (6%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S ++ VF + FNTLI +C + ++ +F GL + D T L
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL-SPDCVTISSLL 251
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA SL L G Q+H ++ K G + ++ +L+ Y D+ + +F+
Sbjct: 252 AACA---SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ WN M+ + + AK + LF M +G++P T C+L + +
Sbjct: 309 NVVLWNLMLVAFGQINDLAK-----SFELFCQM--QAAGIRPNQFTYPCILRTCTCTREI 361
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+ G +H KT + E+D+++ L+DMYSK G L+ A + ++EK+V++WT+M
Sbjct: 362 DLGEQIHSLSVKTGF--ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIA 419
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G H +A+ M+ CG+ P+ + S + C + +GL + + G
Sbjct: 420 GYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-GYS 478
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
+ ++ +V+L R G + EA++ I K D I W L+S G L E+ K+
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEIEHK-DEITWNGLVSGFAQSG---LHEEALKV 534
Query: 414 LLQL 417
+++
Sbjct: 535 FMRM 538
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH RG +V LI Y+ N + ++VF+++ R + +W AM++GY
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL L+R M +GV PT + VLS ++ L G +H K +
Sbjct: 123 -----LGEEALGLYRQM--HRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFC 175
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E +F+G A++ +Y +CG A +F M ++ +T+ + +G A G G A+ + +
Sbjct: 176 SE--IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M+ G+ P+ VT +SL AAC G +++G L + K G+ ++DL +
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYL-FKAGISSDYIMEGSLLDLYVKC 292
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
G +E A I + + +LW +L A D+A
Sbjct: 293 GDVETAL-VIFNSSDRTNVVLWNLMLVAFGQINDLA 327
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 16/294 (5%)
Query: 111 FALGSCARFCSLSTLWL-GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ L S C+ + L+ GR IH K GF + V +I Y ++VF
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203
Query: 170 MPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
MP R + T+N +I+G+ C + +AL +F +M SG+ P T+ +L+
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGE-------HALEIFEEM--QFSGLSPDCVTISSLLAAC 254
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG L+ G +H Y+ K +D + +L+D+Y KCG ++ AL+IF+ NV+
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGI--SSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W M ++ L M+ G++PN T+ + C ++ G + ++
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH-SLS 371
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
K G E + ++D+ + G LE+A ++ + + D + W S+++ H
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAGYVQH 424
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 212/385 (55%), Gaps = 21/385 (5%)
Query: 100 GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
G + D V L +C+R S + +H + KRGF ++ V TL+ YA +
Sbjct: 255 GEVCVDPIAMVSVLSACSRVSEKS---ITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGE 311
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+ ++VFD M R +WN++I Y + ++ +F M+ D + T
Sbjct: 312 LGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE-----SMEIFHRMVKD-GEINYNAVT 365
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ VL + G G C+H + K E++VF+GT+++DMY KCG ++ A F R
Sbjct: 366 LSAVLLACAHSGSQRLGKCIHDQVIKMGL--ESNVFVGTSIIDMYCKCGKVEMARKAFDR 423
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
MREKNV +W+AM G +HG EA+ + M GVKPN +TF S+ AAC HAGL+EEG
Sbjct: 424 MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
H F M ++ VEP ++HY C+VDLLGRAG+L+EA++ I G+ ++PD ++W +LL AC
Sbjct: 484 WHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACR 543
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H +V LGE + L +L P+ +V LSNIYA A RW DVE +R MK
Sbjct: 544 MHKNVDLGEISARKLFELDPK--------NCGYYVLLSNIYADAGRWEDVERMRILMKNS 595
Query: 460 RVETEPGSSI--LQTTTHYTLDGFR 482
+ PG S+ ++ H L G R
Sbjct: 596 GLVKPPGFSLVDIKGRVHVFLVGDR 620
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 172/348 (49%), Gaps = 28/348 (8%)
Query: 68 HFDPPNLFLFNTLI-RCTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLST 124
+ D N+F +N++I DSV + S L+ + T+ A+ SC+ L +
Sbjct: 111 YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 170
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
GRQ H GF ++ V++ L+ Y+ ++ + +FD++ R+ +W +MI G
Sbjct: 171 ---GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 227
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT------TMVCVLSVSSQLGLLEFGAC 238
Y D A AL+LF++ LV+ SG + MV VLS S++
Sbjct: 228 YVQN-----DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG 282
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VHG++ K + E D+ + L+D Y+KCG L + +F M E++V++W ++ A +
Sbjct: 283 VHGFLIKRGF--EGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQN 340
Query: 299 GKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
G E++ + M +D + NAVT +++ AC H+G G + D + K G+E ++
Sbjct: 341 GMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQV-IKMGLESNVF 399
Query: 358 HYSCIVDLLGRAGHLE---EAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ I+D+ + G +E +A++ + +K W ++++ +HG
Sbjct: 400 VGTSIIDMYCKCGKVEMARKAFDRMREKNVKS----WSAMVAGYGMHG 443
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 197/329 (59%), Gaps = 16/329 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V T++++ YA D+ S ++ FDQ P +++ W+AMI GY SQ+ K K+ +L L
Sbjct: 423 DVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGY-SQNNKPKE----SLKL 477
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M+ GV P + T+V VLS QL L G +H Y +P + V + A+VD
Sbjct: 478 FHEMME--RGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLS-VTLENAIVD 534
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY+KCG +D A +FS M E+N+++W M G A +G+ +AI + D MR+ G +PN +T
Sbjct: 535 MYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNIT 594
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F SL AC H GL+ EG FDNM+ K+G++P HY+C+VDLLGR G LEEAY I +
Sbjct: 595 FVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANM 654
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P W +LL+AC +HG+V L LL+L PE + + +V L+N A+
Sbjct: 655 PMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGI--------YVLLANTCAN 706
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
+W DV VR MK K V+ PG S+++
Sbjct: 707 DRKWSDVRRVRSLMKDKGVKKIPGYSLIE 735
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 181/364 (49%), Gaps = 24/364 (6%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
LL +++ +T +KQI A++ + + + +C A H +F +
Sbjct: 161 LLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCAL-AHSGDLHYAHTIFNRVEQ 219
Query: 72 PNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLL--TFDDFTYVFALGSCARFCSLSTLWLG 128
PN F++NT+IR + + F+++V L D ++VFAL +C +F T++ G
Sbjct: 220 PNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQF---ETVFEG 276
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
++ V K GF +LV LIHFYA + + ++VFD+ + TW MI+GY
Sbjct: 277 ESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYA-- 334
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
A DC+ A+ +F ML +S V+P + T++ V+S S +G LE G VH +E+
Sbjct: 335 ---AHDCSEEAMEVFELML--LSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNM 389
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ + AL+DMY KC CL +A +F RM K+V +WT+M G A G A R
Sbjct: 390 --RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFF 447
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
D + NAV ++++ A +E L LF M + GV P I+H +V +L
Sbjct: 448 DQT----PRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMER-GVVP-IEH--TLVSVLSA 499
Query: 369 AGHL 372
G L
Sbjct: 500 CGQL 503
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 131/286 (45%), Gaps = 13/286 (4%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF--YASNKDISSGKKVFDQMPMRSSATW 178
S ST+ +QI +T G + + + +I F A + D+ +F+++ ++ W
Sbjct: 166 SCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFNRVEQPNTFMW 225
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N MI GY Q+ + AF+ V + V++ + V L Q + G
Sbjct: 226 NTMIRGY--QNARKPIFAFSFFVYMFQLRVEMDS-----RSFVFALKACQQFETVFEGES 278
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
V+ + K + + ++ + L+ Y++ G L NA +F +K+V+TWT M G A H
Sbjct: 279 VYCVVWKMGF--DCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAH 336
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA+ + + M V+PN VT ++ +AC G +E G + + ++ K + +
Sbjct: 337 DCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEK-NMRCSLSL 395
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
++ ++D+ + L +A + K D W S+++ GD+
Sbjct: 396 HNALLDMYVKCDCLVDARELFDRMATK-DVYSWTSMVNGYAKCGDL 440
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH-VTKRGFMFNV 144
P++S+ +F + +G++ + T V L +C + L+ L LG IH + V + +V
Sbjct: 471 PKESLKLFHEMMERGVVPIEH-TLVSVLSACGQ---LTCLNLGDWIHQYFVVGKIIPLSV 526
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
+ ++ YA I + +VF MP R+ +WN MI GY + + + A N R
Sbjct: 527 TLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQ--AINVFDQMR 584
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDM 263
+M G +P + T V +L+ S GL+ G ME+ + + PE + +VD+
Sbjct: 585 NM-----GFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHY--ACMVDL 637
Query: 264 YSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGK 300
+ G L+ A + + M + W A+ +HG
Sbjct: 638 LGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGN 675
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 202/351 (57%), Gaps = 19/351 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSATWNAMIN 183
L L R++H V + G +V+ L+ YA D ++ + F M P ++ TWN MI+
Sbjct: 180 LVLAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMIS 239
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVD---VSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+ + + AL LFR+ML S P D T V VL ++LG L+ G VH
Sbjct: 240 AHARAGELQE-----ALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVH 294
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+ +T V +G AL+DMY+KCG ++ A +F M ++V T+T+M +G+A+HG+
Sbjct: 295 AYIVRTGRDAAAGV-VGNALIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGR 353
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA+ L MR V+PN VTF + +ACCHAG +E+GL FD M GV P I+HY
Sbjct: 354 GEEALALFGDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYG 413
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VD+LGRAG L+EA + +PI+PDAI+W SLL+AC HG V E+V + + + + +
Sbjct: 414 CVVDMLGRAGRLDEAEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAEDEDD 473
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V +SN+YA R VR+QM+ +V+ PG S+++
Sbjct: 474 ---------AGDYVLMSNMYAQEGRHGKAVQVRRQMRRGKVDKVPGCSLIE 515
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 233/431 (54%), Gaps = 56/431 (12%)
Query: 77 FNTLI----RCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+NTLI R P++++ +F G + D+ T + A+ CA+ + L LG+++
Sbjct: 190 WNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQ---MGDLELGKRL 246
Query: 132 HVHVTKRGFMFNVLVATTLIHFYA---------------SNKD----------------I 160
H V +G V + ++ Y SN+ +
Sbjct: 247 HEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMM 306
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ +FD+MP R WNA++ GY Q+K+ K+ A+ LF +M S V P + TM
Sbjct: 307 EDARMLFDEMPERDVFPWNALMAGYV-QNKQGKE----AIALFHEM--QKSKVDPNEITM 359
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V +LS SQLG LE G VH Y+++ + V +GT+LVDMY+KCG + A+ +F+ +
Sbjct: 360 VNLLSACSQLGALEMGMWVHHYIDR--HKLHLSVALGTSLVDMYAKCGNIKKAICVFNEI 417
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+N LTWT+M G+A HG +EAI M D G++P+ +TF + +ACCHAGLVE G
Sbjct: 418 PVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGR 477
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
F M +K+ +E +KHYSC++DLLGRAGHL+EA + +P+ PDA++W +L AC +
Sbjct: 478 QFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRM 537
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HG++ LGEK L++L P + + +V L+N+YA A + VR M+
Sbjct: 538 HGNITLGEKAAMKLVELDPSDSGI--------YVLLANMYAEANMRKKADKVRVMMRHLG 589
Query: 461 VETEPGSSILQ 471
VE PG S ++
Sbjct: 590 VEKVPGCSCIE 600
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 127/486 (26%), Positives = 210/486 (43%), Gaps = 71/486 (14%)
Query: 5 PGHRCFALLKLKAITTPSH--IKQIHAQLITNALKSP----PLYAQLIQLYC-TKKASPQ 57
P R LL A+ PS + ++HA + + L S P +L+ + + ASP+
Sbjct: 3 PPSRLLVLLHAGAVHPPSFRVLLKLHAHHLVSGLLSSHSTSPFIDRLVAAFAHSDPASPR 62
Query: 58 STKIVHFVFTHFDPP--NLFLFNTLIRCT---PPQDSV-----LVFAYWVSKGLLTFDDF 107
+ P + F +N R P Q V ++ + G D
Sbjct: 63 PLLHALAILASLPSPPDSAFPYNAAFRALSLCPHQHLVDRHCLPLYRALLHSGSARPDHL 122
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ F + +CAR S G + HV K GF +V V +HF++ ++ +++F
Sbjct: 123 TFPFLIKACARLQYRS---YGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLF 179
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D+ P+R +WN +I GY + AL LF + D + V+P + T++ +S
Sbjct: 180 DESPVRDVVSWNTLIGGYVRSGLPRE-----ALELFWRLAEDGNAVRPDEVTVIGAVSGC 234
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL----------------- 270
+Q+G LE G +H +++ V + A++DMY KCG L
Sbjct: 235 AQMGDLELGKRLHEFVDNKGV--RCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVS 292
Query: 271 --------------DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
++A ++F M E++V W A+ G + +G EAI L M+ V
Sbjct: 293 WTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKV 352
Query: 317 KPNAVTFTSLFAACCHAGLVEEGL---HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
PN +T +L +AC G +E G+ H D K V + +VD+ + G+++
Sbjct: 353 DPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVAL----GTSLVDMYAKCGNIK 408
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQP-EVTFVDV--AC 428
+A IP++ +A+ W S++ HG D A+ I L LQP E+TF+ V AC
Sbjct: 409 KAICVFNEIPVQ-NALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSAC 467
Query: 429 TSEDFV 434
V
Sbjct: 468 CHAGLV 473
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 254/493 (51%), Gaps = 49/493 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L L++ + + IKQ HA LIT L P+ A + L +S S H +F
Sbjct: 19 LFSLESCKSMNQIKQTHAHLITTGLILHPITANKL-LKVLIASSFGSLSYAHQLFDQIPK 77
Query: 72 PNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P++F++NT+I+ T +S+ +F V + +T+VF +C L L
Sbjct: 78 PDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGN--GLGVL- 134
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
G QI VH K G N+ V +I YA+ + ++VFD + +WN MI GY
Sbjct: 135 EGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYV 194
Query: 187 SQSK--KAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTM 220
+ +AK+ C AL LF +ML +G P + T+
Sbjct: 195 GSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQ--TGPPPNEFTL 252
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
L+ + L L+ G +H Y++K+ + N+ + + L+DMY+KCG +D A +F
Sbjct: 253 ASALAACANLVALDQGRWIHVYIDKS-EIKMNERLLAS-LLDMYAKCGEIDFAAKVFHDE 310
Query: 281 R--EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
+ V W AM G A+HGK EAI L + M+ V PN VTF +L AC H LVEE
Sbjct: 311 YGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEE 370
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G F +M S +G+EP I+HY C+VDLLGR+G L+EA + +P+ PDA +W +LL AC
Sbjct: 371 GRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGAC 430
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+H D+ G+++GKI+ +L + + C V L+N+Y+++ +W + ++VR++++V
Sbjct: 431 RIHKDIERGQRIGKIIKELDSD----HIGC----HVLLANLYSASGQWDEAKAVRQKIEV 482
Query: 459 KRVETEPGSSILQ 471
+ PG S ++
Sbjct: 483 SGRKKTPGCSSIE 495
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 156/465 (33%), Positives = 246/465 (52%), Gaps = 34/465 (7%)
Query: 15 LKAITTPSHIK---QIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L A ++PS +K QI +I S + L+ +Y A S K H VF
Sbjct: 420 LGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMY----AKCGSLKDAHRVFEKIS 475
Query: 71 PPNLFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
N+ +N +I + ++ F + +G+ + T+ L C S +L
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKP-NSSTFTSILNVCK---SSDSLE 531
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LG+ +H + K G ++ V+ L+ + + D+ S K +F+ MP R +WN +I G+
Sbjct: 532 LGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
K AF+ + ++ SG+KP T +L+ + L G +H + +
Sbjct: 592 QHGKN--QVAFDYFKMMQE-----SGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ + DV +GT L+ MY+KCG +++A +F ++ +KNV +WT+M G A HG+G EA+
Sbjct: 645 AF--DCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALE 702
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M+ GVKP+ +TF +AC HAGL+EEGLH F +MK ++ +EP ++HY C+VDL
Sbjct: 703 LFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLF 761
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG L EA FI+ + ++PD+ +W +LL AC VH +V L EK + L+L P V
Sbjct: 762 GRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGV-- 819
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
FV LSNIYA+A W +V +RK M + V +PG S ++
Sbjct: 820 ------FVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIE 858
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 160/298 (53%), Gaps = 16/298 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T+V L +CA ++ GR+++ + K G+ ++ V T LI+ + DI
Sbjct: 210 DKRTFVSMLNACADARNVDK---GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDAT 266
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVFD +P R TW +MI G + + C LF+ M + GV+P V +L
Sbjct: 267 KVFDNLPTRDLVTWTSMITGLARHGRFKQACN-----LFQRM--EEEGVQPDKVAFVSLL 319
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LE G VH M++ + + ++++GTA++ MY+KCG +++AL +F ++ +N
Sbjct: 320 RACNHPEALEQGKKVHARMKEVGW--DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN 377
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++WTAM G A HG+ +EA + M + G++PN VTF S+ AC ++ G + D
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQD 437
Query: 345 N-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ +++ +G + ++ + ++ + + G L++A+ I K + + W ++++A H
Sbjct: 438 HIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L C +F +L G +I+ H+ K G ++ + TLI+ YA + S K++F
Sbjct: 112 TYSALLQLCIKFKNLGD---GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIF 168
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D M + +WN ++ GY + A L M+ D VKP T V +L+
Sbjct: 169 DDMREKDVYSWNLLLGGYVQHGLYEE-----AFKLHEQMVQD--SVKPDKRTFVSMLNAC 221
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ ++ G ++ + K + + D+F+GTAL++M+ KCG + +A +F + ++++T
Sbjct: 222 ADARNVDKGRELYNLILKAGW--DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WT+M TG+A HG+ +A L M + GV+P+ V F SL AC H +E+G + MK
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339
Query: 348 S-KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
W E ++ + I+ + + G +E+A + + + + W ++++ HG +
Sbjct: 340 EVGWDTEIYVG--TAILSMYTKCGSMEDALE-VFDLVKGRNVVSWTAMIAGFAQHGRI 394
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 35/236 (14%)
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
VD S ++ T +L + + L G ++ +++K+ P D+F+ L++MY+KC
Sbjct: 101 VDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQP--DIFMRNTLINMYAKC 158
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G +A IF MREK+V +W + G HG EA +L + M VKP+ TF S+
Sbjct: 159 GNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSML 218
Query: 328 AACCHAGLVEEGLHLFD-NMKSKWG---------VEPHIK-------------------- 357
AC A V++G L++ +K+ W + HIK
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGEKV 410
++ ++ L R G ++A N + ++PD + + SLL ACN + G+KV
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV 334
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 165/443 (37%), Positives = 228/443 (51%), Gaps = 32/443 (7%)
Query: 39 PPLYAQLIQLYCTKKASPQSTKIVHFVFTHF-DPPNLFLFNTLIR----CTPPQDS---- 89
P L +L+ L A P VF P + +NTL+R + P S
Sbjct: 57 PALVTRLLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAA 116
Query: 90 -VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT 148
V VF + +G+ D +T+V L +CA + GRQ H K G + V
Sbjct: 117 AVRVFVRMLEEGVAP-DTYTFVSLLKACA---AARAGEEGRQAHALAVKLGAADHDYVRP 172
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
TLI+ YA D + + +F ++NAMI S+ + ALVLFR+M
Sbjct: 173 TLINMYAECGDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGE-----ALVLFREM-- 225
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
G+KPT T++ VLS + LG LE G VH Y+ K + V + TAL+DMY+KCG
Sbjct: 226 QGKGLKPTSVTVISVLSACALLGALELGRWVHDYVRKIGL--GSLVKVSTALIDMYAKCG 283
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
L++A+ +F M K+ W+ M A HG G EAI L + M+ G+KP+ +TF +
Sbjct: 284 SLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLY 343
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC H+GLV EGL FD+MK G+ P IKHY C+ DLL R+G LE AY FI +PI P
Sbjct: 344 ACSHSGLVSEGLQYFDDMKDH-GIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP 402
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
ILWR+LLSAC HGD LG++V + +L+L D+V SN+ A+ W +
Sbjct: 403 ILWRTLLSACGGHGDFELGKRVFERILKLDDS--------HGGDYVIFSNLCANTGYWEE 454
Query: 449 VESVRKQMKVKRVETEPGSSILQ 471
+ VRK M K V PG S ++
Sbjct: 455 MNMVRKLMSEKGVVKVPGCSSIE 477
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 201/355 (56%), Gaps = 38/355 (10%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKA-------- 192
+V+ T+I+ YA I K++FD+MP R+ +WN+M++G+ C ++A
Sbjct: 96 DVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMP 155
Query: 193 --------------KDCA--FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
C AL LF M GVKPT+ T+V +LS + LG L+ G
Sbjct: 156 CRDVVSWNSMLACYAQCGKPNEALALFDQM--RAVGVKPTEATVVSLLSACAHLGALDKG 213
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H Y+ E + +GTALVDMY+KCG + A +F+ M K+VL W + GMA
Sbjct: 214 LHLHTYINDNRI--EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 271
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
IHG EA +L M++ V+PN +TF ++ +AC HAG+V+EG L D M S +G+EP +
Sbjct: 272 IHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKV 331
Query: 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
+HY C++DLL RAG LEEA I +P++P+ +LL C +HG+ LGE VGK L+
Sbjct: 332 EHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 391
Query: 417 LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LQP C S ++ LSNIYA+A++W D VR MKV + PG S+++
Sbjct: 392 LQP--------CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 438
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 27/333 (8%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
TY F + +C S W G +H HV K GF + + +LIH YA+ KD+ + K++
Sbjct: 1 MTYPFVIKACNES---SVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQL 57
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
F R +WNAMI+GY K + +V R + DV V +
Sbjct: 58 FSLCSDRDVVSWNAMIDGYV----KRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKI 113
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
L + MPE ++ +++ + KCG ++ A +FS M ++V+
Sbjct: 114 DEAKRLFD-------------EMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVV 160
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W +M A GK NEA+ L D MR GVKP T SL +AC H G +++GLHL +
Sbjct: 161 SWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 220
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+E + + +VD+ + G + A + K D + W ++++ +HG V
Sbjct: 221 NDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESK-DVLAWNTIIAGMAIHGHVKE 278
Query: 407 GEKVGKILLQ--LQP-EVTFVDV--ACTSEDFV 434
+++ K + + ++P ++TFV + AC+ V
Sbjct: 279 AQQLFKEMKEASVEPNDITFVAMLSACSHAGMV 311
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 227/407 (55%), Gaps = 34/407 (8%)
Query: 71 PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA---RFCSLSTLWL 127
P + + L C ++ L F + +L D T + A SCA + S + + +
Sbjct: 8 PDQVIIATVLSTCAHTRN--LRFGKAIHSYMLVSD--TLIDAQVSCALMNMYASCADMEM 63
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
+++ V+++ ++++TT+++ YA N + +F+ MP + +W+AMI GY
Sbjct: 64 AEKLYNRVSEK----EIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAE 119
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
SK AL LF DM SGVKP + TM+ V+S + +G LE C+H ++E
Sbjct: 120 SSKP-----MEALNLFHDM--QRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHS 172
Query: 248 Y---MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+P IG AL+DM+SKCG L AL +F+ M +KNV+TWT++ T A+HG G A
Sbjct: 173 MCKILP-----IGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSA 227
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ L ++M+ G++PN VTF L ACCHAGLVEEG LF M ++ +EP +HY C+VD
Sbjct: 228 LTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVD 287
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LLGRA L +A + I + ++P+ ++W SLL+AC +HGD+ LG K +L+L P
Sbjct: 288 LLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGA 347
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYA W DV+ VR M+V+ + G S ++
Sbjct: 348 Q--------VLLSNIYAEYGNWNDVKEVRGVMEVQGTWKKKGCSWME 386
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 35/224 (15%)
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM--------------------------- 243
S V P + VLS + L FG +H YM
Sbjct: 4 SRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEM 63
Query: 244 -EKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
EK + + E ++ + T +V Y+K G ++ A IF+ M K+V++W+AM G A K
Sbjct: 64 AEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKP 123
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHY 359
EA+ L M+ GVKP+ +T S+ +AC + G +E+ +H F S + P
Sbjct: 124 MEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILP---IG 180
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ ++D+ + G L A + +P K + + W S+++A +HGD
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQK-NVVTWTSIITASAMHGD 223
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 259/496 (52%), Gaps = 67/496 (13%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+Q H+++++ L L A +LI Y + S VF N+FL+N+LI
Sbjct: 43 RQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHS----RLVFDSLQHKNVFLWNSLING 98
Query: 84 TPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKR 138
++ +F S +L DDFT L + ++ S L L+ G+ IH +
Sbjct: 99 YAKNRLYNEAFQLFNQMCSSDVLP-DDFT----LSTLSKVSSELGALFSGKSIHGKSIRI 153
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN------------------- 179
GF+ + +VA +++ Y + +KVFD+M +R+S +WN
Sbjct: 154 GFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVF 213
Query: 180 ------------AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
AMINGY + AL LFRDM V + G++P ++V VL
Sbjct: 214 DRMKCRNVFSWTAMINGYVENGDSDE-----ALSLFRDMQV-IDGIEPNRVSLVSVLPAC 267
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVL 286
S L G +HG+ + N+V + AL+DMYSKCG LD+A +F K+ +
Sbjct: 268 SSFSGLLSGRQIHGFAVRKEL--NNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAI 325
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W++M +G +HGKG EAI L D M G++P+ +T + +AC +GLV EGL+++ ++
Sbjct: 326 SWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSV 385
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ +G+EP ++ ++CIVD+LGRAG L+ A +FI +P++P +W +L+S +HGD+ +
Sbjct: 386 INDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEM 445
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
E + L+QL+PE ++V++SN+YAS+ RW V VR+ MK KR+ PG
Sbjct: 446 QELAYRFLIQLEPE--------NPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPG 497
Query: 467 SS--ILQTTTH--YTL 478
S + TH YTL
Sbjct: 498 CSWISINNKTHCFYTL 513
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 165/360 (45%), Gaps = 54/360 (15%)
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
+L L RQ H + G N L+AT LI YA + + VFD + ++ WN++IN
Sbjct: 38 SLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97
Query: 184 GYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
GY AK+ +N A LF M S V P D T+ + VSS+LG L G +HG
Sbjct: 98 GY------AKNRLYNEAFQLFNQMC--SSDVLPDDFTLSTLSKVSSELGALFSGKSIHGK 149
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLD-----------------NALL---------- 275
+ ++ +D + +++ MY KCG + N L+
Sbjct: 150 SIRIGFV--SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLV 207
Query: 276 ----IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAAC 330
+F RM+ +NV +WTAM G +G +EA+ L M+ G++PN V+ S+ AC
Sbjct: 208 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPAC 267
Query: 331 CH-AGLVE-EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
+GL+ +H F K + + + ++D+ + G L+ A + DA
Sbjct: 268 SSFSGLLSGRQIHGFAVRKE---LNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDA 324
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQ--LQPE-VTFVDV--ACTSEDFVALS-NIYAS 442
I W S++S +HG + +LQ ++P+ +T V + AC+ V NIY+S
Sbjct: 325 ISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSS 384
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/497 (31%), Positives = 245/497 (49%), Gaps = 67/497 (13%)
Query: 20 TPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T +KQIH Q+I N L +L+ Y T + H VF + P+ ++N
Sbjct: 46 TIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNA----HKVFERIENPSTTVWN 101
Query: 79 TLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+IR P V ++ V + ++FTY F +G CAR L G Q+H
Sbjct: 102 QMIRGHSQSETPHKLVELYNRMV-EAEAEPNEFTYSFLIGGCARSXLLRE---GEQVHGR 157
Query: 135 VTKRGFMFNVLVATTLIHFYA----------------------------------SNKDI 160
V G+ NV V T+L++ YA D+
Sbjct: 158 VVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDV 217
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+++FD+MP R+ +W MI G C+Q + K AL LF +M +GVK +
Sbjct: 218 DGARRIFDEMPERNVVSWTTMIAG-CAQIGRCK----QALHLFHEM--RRAGVKLDQVAL 270
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI--GTALVDMYSKCGCLDNALLIFS 278
V LS ++LG L+ G +H Y+++ + + + +L+ MY+ CG +D A +F
Sbjct: 271 VAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFI 330
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV---KPNAVTFTSLFAACCHAGL 335
M++++ ++WT+M TG A G EA+ + M+ G +P+ +TF + AC HAG
Sbjct: 331 GMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGF 390
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++G H F+ M KWG+ P I+HY C+VDLL RAG L+EA+ +P+KP+ +W +LL
Sbjct: 391 VDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALL 450
Query: 396 SACNVHGDVALGEKVG-KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
C +H + L V K++L+L+P+ + V LSN+YA+A+RW DV VR+
Sbjct: 451 GGCRIHKNAELASHVAQKLVLELKPDQ-------AAGYLVLLSNVYATAKRWQDVALVRQ 503
Query: 455 QMKVKRVETEPGSSILQ 471
+M V G S +Q
Sbjct: 504 KMVEIGVRKPAGRSWVQ 520
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 203/347 (58%), Gaps = 17/347 (4%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L L IH + K F+ + V+T L Y+ +I S +K+FD+ P +S +WNAMI+G
Sbjct: 335 LMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y +Q+ +D A+ LFR+M S P T+ C+LS +QLG L G VH +
Sbjct: 395 Y-TQNGLTED----AISLFREM--QNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
T + E+ +++ TAL+ MY+KCG + A +F M +KN +TW M +G +HG G EA
Sbjct: 448 STDF--ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEA 505
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ + M + G+ P VTF + AC HAGLV+EG +F++M ++G EP +KHY+C+VD
Sbjct: 506 LTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVD 565
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
+LGRAGHL+ A FI +PI+P +W +LL AC +H D L V + L +L P+
Sbjct: 566 ILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPD---- 621
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V V LSNI+++ +P +VR+ K +++ PG ++++
Sbjct: 622 NVGY----HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 146/327 (44%), Gaps = 20/327 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
K T+ SH+ Q HAQ++ + ++ L +L Q A + I F P+
Sbjct: 27 FKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDI----FLSVQRPD 82
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+FLFN L+R P S+ VFA+ L + TY FA+ + + F G
Sbjct: 83 VFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA---GC 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH G +L+ + ++ Y + +KVFD+MP + + WN MI+GY
Sbjct: 140 VIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY---- 195
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + ++ +FRD L++ S + TT++ +L ++L L G +H KT
Sbjct: 196 -RKNEMYVESIQVFRD-LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ ++ T + +YSKCG + A +F R +++ + AM G +G+ ++ L
Sbjct: 254 SHD--YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLV 336
+ G K + T SL H L+
Sbjct: 312 ELMLSGAKLKSSTLVSLVPVSGHLMLI 338
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L +CA+ +LS LG+ +H V F ++ V+T LI YA I+ +++FD MP
Sbjct: 427 LSACAQLGALS---LGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPK 483
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
++ TWN MI+GY + AL +F +ML SG+ PT T +CVL S GL
Sbjct: 484 KNEVTWNTMISGYGLHGHGQE-----ALTIFSEML--NSGIAPTPVTFLCVLYACSHAGL 536
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAM 291
++ G + M Y E V +VD+ + G L AL M + W +
Sbjct: 537 VKEGDEIFNSMIHR-YGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETL 595
Query: 292 ATGMAIHGKGNEA 304
IH N A
Sbjct: 596 LGACRIHKDTNLA 608
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 252/486 (51%), Gaps = 60/486 (12%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+K+IHA L T + + L+ + + + + + + P F +NTLIR
Sbjct: 29 LKRIHALLFTLGISQDETIKSKLLLF-SALSPARDLDYSYKLILNVPNPTTFNWNTLIRA 87
Query: 84 ----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P S+ VF + G+ + D TY F + + ++ + LG +HVH+ K G
Sbjct: 88 FSNTKNPNPSITVFIKMLQNGV-SPDYLTYPFLVKATSKLLNQE---LGMAVHVHIVKSG 143
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAF 197
+ + +LIH YAS +DI+S +KVFD+MP ++ TWNAM++GY C A++ F
Sbjct: 144 HEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMARE-VF 202
Query: 198 N-------------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
N A+ LF M D G + T+V L + LG
Sbjct: 203 NLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFD--GPMANEVTLVSALCACAHLGA 260
Query: 233 LEFGACVHGYMEKTFYMPEND----VFIGTALVDMYSKCGCLDNALLIFS--RMREKNVL 286
LE G +H Y+ EN+ + + T+LVDMY+KCG + AL +F ++E +VL
Sbjct: 261 LEHGRMMHRYI------VENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVL 314
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
W A+ G+A HG EA+ L M+ G+ P+ +T+ L + C H GLVEE + FD +
Sbjct: 315 IWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCL 374
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ K G+ P ++HY+C+VD L RAG + EAY F+ +P++P + + +LLS C HG + +
Sbjct: 375 R-KHGMIPKVEHYACMVDALSRAGQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDI 433
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
+ VG+ L++L P +V LSNIYA+ +RW D +++R+ M+ K V+ PG
Sbjct: 434 AKVVGRRLVELDPN--------HDGRYVGLSNIYAADKRWDDAKNIREAMERKGVKKSPG 485
Query: 467 SSILQT 472
S ++
Sbjct: 486 FSFIEV 491
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 253/492 (51%), Gaps = 73/492 (14%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKS--PPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
++ L+ +KQ+HAQ + + L P +L++ Y T +++ F+ F
Sbjct: 17 IISLRTCHDFQEVKQLHAQFVVSGLLGYHPLCARRLLEAYVTMSQ-------IYYAFSIF 69
Query: 70 D---PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
+ P++F++NT+IR LT D+FTY F L +C+ L +
Sbjct: 70 ERIPSPDVFVYNTMIRG------------------LTMDNFTYTFVLKACSH---LKAPF 108
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
G+Q+H + K G + + + ++LIH Y ++ I ++V + ++ NAMI+GY
Sbjct: 109 EGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYL 168
Query: 187 SQSK-----------KAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTM 220
++ + AKD A AL LF+DM+V S + P + +
Sbjct: 169 TEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMMV--SHILPNEAAL 226
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V +LS QLG L G +H Y++KT + + TAL+DMY+K G ++ +F +M
Sbjct: 227 VSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTK--LTTALIDMYAKSGSIECGYGLFQKM 284
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
++V+TW M + AIHG ++ +L D M G++PN V F ++ +AC HAG VEEG
Sbjct: 285 ARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGR 344
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
F M+ +G++P I+HY C+VDLLGRAG L +A I+ +P +P++I+W SLL AC
Sbjct: 345 QYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQLILSMPKQPNSIIWGSLLGACRT 404
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI-YASAERWPDVESVRKQMKVK 459
H D+ G + L++L+P TS D L+ + +A+A + +RK + K
Sbjct: 405 HNDLKRGTWAFENLMELEP---------TSGDRHKLAGLMFANAGEKEEAAKIRKMIHEK 455
Query: 460 RVETEPGSSILQ 471
+ T GSS ++
Sbjct: 456 EMVTTCGSSFIE 467
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 152/491 (30%), Positives = 247/491 (50%), Gaps = 73/491 (14%)
Query: 22 SHIKQIHAQLITNALKSPP-LYAQLIQL-----YCTKKASPQSTKIVHFVFTHFDPPNLF 75
+ +KQIHA + N L L +L+QL CT +F P+++
Sbjct: 2 NQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACT-------------LFDQIPKPSVY 48
Query: 76 LFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
L+N I+ P L++ S+G + + +++ F +CA SL ++ G+ +
Sbjct: 49 LYNKFIQTFSSIGHPHRCWLLYCQMCSQGC-SPNQYSFTFLFPACA---SLFNVYPGQML 104
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H H K GF ++ T L+ YA + S +++FD+MP+R TWN++I GY
Sbjct: 105 HSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHM 164
Query: 192 AKDCAFNALVLFRDM------------------------------LVDVSGVKPTDTTMV 221
AL LF M L + G KP + ++
Sbjct: 165 EA-----ALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIA 219
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM- 280
VL SQLG L+ G + Y + + ++ A+++++++CG ++ A +F +
Sbjct: 220 SVLPACSQLGALDIGKRIEAYARNNGFF--KNAYVSNAVLELHARCGNIEEAQQVFDEIG 277
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
++N+ +W M G+A+HG+ +A++L D M ++P+ VTF L AC H G+V EG
Sbjct: 278 SKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGR 337
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
LF++M+SK+ V P ++HY C+VDLLGRAG L+EAYN I +P+ PD+++W +LL AC+
Sbjct: 338 QLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSF 397
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HG+V LGE + L +L+P ++V LSNIYA A W V +RK MK
Sbjct: 398 HGNVELGEVAAESLFKLEP--------WNPGNYVILSNIYALAGDWSGVARLRKMMKGGH 449
Query: 461 VETEPGSSILQ 471
+ G S ++
Sbjct: 450 ITKRAGYSYIE 460
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 245/487 (50%), Gaps = 63/487 (12%)
Query: 22 SHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+ +KQIHA + N L L +L+QL A +F P+++L+N
Sbjct: 2 NQLKQIHAYSLRNGLDHTKFLIEKLLQLPDLPYACT--------LFDQIPKPSVYLYNKF 53
Query: 81 IRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I+ P L++ S+G + + +++ F +CA SL ++ G+ +H H
Sbjct: 54 IQTFSSIGHPHRCWLLYCQMCSQGC-SPNQYSFTFLFPACA---SLFNVYPGQMLHSHFC 109
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K GF ++ T L+ YA + S +++FD+MP+R TWN++I GY
Sbjct: 110 KSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEA--- 166
Query: 197 FNALVLFRDM------------------------------LVDVSGVKPTDTTMVCVLSV 226
AL LF M L + G KP + ++ VL
Sbjct: 167 --ALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPA 224
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NV 285
SQLG L+ G + Y + + ++ A+++++++CG ++ A +F + K N+
Sbjct: 225 CSQLGALDIGKRIEAYARNNGFF--KNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNL 282
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+W M G+A+HG+ +A++L D M ++P+ VTF L AC H G+V EG LF++
Sbjct: 283 CSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFES 342
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M+SK+ V P ++HY C+VDLLGRAG L+EAYN I +P+ PD+++W +LL AC+ HG+V
Sbjct: 343 MESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVE 402
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
LGE + L +L+P ++V LSNIYA A W V +RK MK +
Sbjct: 403 LGEVAAESLFKLEP--------WNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRA 454
Query: 466 GSSILQT 472
G S ++
Sbjct: 455 GYSYIEV 461
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 211/397 (53%), Gaps = 55/397 (13%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT F L +C + LS + G+ IH K GF N+ + +++ Y ++
Sbjct: 9 DTFTCSFVLKACLK---LSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65
Query: 165 KVFDQMPMRSSATWN-------------------------------AMINGY--CSQSKK 191
+F++MP R + TWN +MI+G+ C + +
Sbjct: 66 LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
A D LF M ++ V+P + T+V VL+ + LG L+ G VH Y K+ + +
Sbjct: 126 AID-------LF--MKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGF--K 174
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+V + L+DMY KCGCL+NA +F M E+ V++W+AM G+A+HG+ EA+ L M
Sbjct: 175 RNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEM 234
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GVKPN VTF L AC H GL++EG F +M + +GV P I+HY C+VDL RAG
Sbjct: 235 IKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGL 294
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
LEEA+ FI+ +PIKP+ ++W +LL C VH ++ L E+ K L +L P
Sbjct: 295 LEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDP--------LNDG 346
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+V +SNIYA AERW D VRK MK + V+ G S
Sbjct: 347 YYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWS 383
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 18/241 (7%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ + ++C P +++ +F + + ++ T V L +CA L L LGR +H +
Sbjct: 113 MISGFVQCGKPNEAIDLFMKLEDEAVRP-NEVTVVSVLAACA---DLGDLDLGRIVHEYS 168
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
TK GF NV V TLI Y + + ++VF +M R+ +W+AMI G +
Sbjct: 169 TKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQ----- 223
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF-YMPENDV 254
A AL LF +M+ GVKP T + +L S +GL++ G M + +P+ +
Sbjct: 224 AEEALCLFSEMI--KLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEH 281
Query: 255 FIGTALVDMYSKCGCLDNA-LLIFSRMREKNVLTWTAMATGMAIHGK---GNEAIRLLDS 310
+ +VD++S+ G L+ A I S + N + W A+ G +H EAI+ L
Sbjct: 282 Y--GCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSE 339
Query: 311 M 311
+
Sbjct: 340 L 340
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 126/328 (38%), Positives = 207/328 (63%), Gaps = 16/328 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ ++ YAS +S +K+FD M R++ATW++M+ G QS ++ AL +
Sbjct: 174 NVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLV-QSDHCEE----ALRV 228
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F DM+ GV P ++ +V V+S +QL LE G VH Y+++ + V + TA+VD
Sbjct: 229 FSDMVA--RGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELH-GSMSVILATAIVD 285
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCGC+ NA+ +F+ M +N+ +W +M TG+A++G+ +A+ L M+ GV+PN +T
Sbjct: 286 MYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDIT 345
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L AC H+GLV+EG LF+ M + +G++P +HY +VDLLGRAG ++EA +F+ +
Sbjct: 346 FIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNM 405
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P LW +L ACN+HG+V LGE++ K L++L+P ++ LSNIY +
Sbjct: 406 PVEPHPGLWGALAGACNIHGEVELGEEIAKKLIELEPR--------HGSRYILLSNIYGT 457
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSIL 470
+ RW D+ +VR+ +K ++V G++++
Sbjct: 458 SSRWEDMATVRRLIKERKVSKGTGNAVV 485
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++N S A D A +A LF D DV+ V T TTMV G
Sbjct: 113 IVNAAVSAYFTAADVA-SAERLFSDTSKDVADVV-TWTTMVA-------------GHARA 157
Query: 241 GYMEKTFY----MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
G +E+ + MPE +V A++ Y+ G L A +F M +N TW++M TG+
Sbjct: 158 GDVERARWFFDAMPERNVVSWNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLV 217
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
EA+R+ M GV PN S+ +AC +E G+ + +K + +
Sbjct: 218 QSDHCEEALRVFSDMVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSV 277
Query: 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD--VALGEKVGKIL 414
+ IVD+ G+ G + A +P++ + W S+++ ++G AL +
Sbjct: 278 ILATAIVDMYGKCGCIHNAIRVFAAMPVR-NIYSWNSMITGLAMNGREMQALSLFWKMQM 336
Query: 415 LQLQP-EVTFVDV--ACTSEDFV 434
+QP ++TF+ + AC+ V
Sbjct: 337 AGVQPNDITFIGLLGACSHSGLV 359
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 212/387 (54%), Gaps = 19/387 (4%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+ L F + + + ++ T V L +CA+ SL LG + + G N+ +
Sbjct: 246 EEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE---LGNWVRSWIEDHGLGSNLRLV 302
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI Y+ D+ + +F+ + + +WN MI GY + + AL LFR M
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE-----ALALFRKM- 356
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
S V+P D T V +L + LG L+ G +H Y++K F N + T+L+DMY+KC
Sbjct: 357 -QQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTN-TSLWTSLIDMYAKC 414
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A +F+ M+ K++ +W AM +G+A+HG N A+ L MRD G +P+ +TF +
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL 474
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+AC HAGLVE G F +M + + P ++HY C++DLLGRAG +EA + + +KPD
Sbjct: 475 SACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPD 534
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W SLL AC VHG+V LGE K L +L+PE +V LSNIYA+A RW
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPE--------NPGAYVLLSNIYATAGRWD 586
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTT 474
DV +R ++ K ++ PG S ++ +
Sbjct: 587 DVARIRTKLNDKGMKKVPGCSSIEVDS 613
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 224/455 (49%), Gaps = 57/455 (12%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNTLI 81
++KQIH+Q+I L + + +C SP + +F + PN F++NT+I
Sbjct: 47 NLKQIHSQIIKTGLHNTQFALSKLIEFCA--ISPFGNLSYALLLFESIEQPNQFIWNTMI 104
Query: 82 RCTPPQDS-VLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R S V ++V L + + +T+ F L SCA+ + G+QIH HV K
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE---GKQIHGHVLKL 161
Query: 139 GFMFNVLVATTLIHFYASNKDIS-------------------------------SGKKVF 167
G + V T+LI+ YA N ++ +++F
Sbjct: 162 GLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLF 221
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+++P+R + +WNAMI GY +QS + ++ AL F++M + V P ++TMV VLS
Sbjct: 222 EEIPVRDAVSWNAMIAGY-AQSGRFEE----ALAFFQEM--KRANVAPNESTMVTVLSAC 274
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+Q G LE G V ++E + +++ + AL+DMYSKCG LD A +F + EK++++
Sbjct: 275 AQSGSLELGNWVRSWIED--HGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W M G + EA+ L M+ V+PN VTF S+ AC + G ++ G + +
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVAL 406
K+ + ++ ++D+ + G++E A G +KP ++ W +++S +HG +
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLGSWNAMISGLAMHGHANM 450
Query: 407 GEKVGKILLQ--LQP-EVTFVDV--ACTSEDFVAL 436
++ + + +P ++TFV V AC+ V L
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVEL 485
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 58/322 (18%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQM 170
L +C F +L +QIH + K G + LI F A + ++S +F+ +
Sbjct: 39 LSTCKSFQNL------KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+ WN MI G S F +L + GV+P T +L +++
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRML-------LCGVEPNSYTFPFLLKSCAKV 145
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---------------------- 268
G + G +HG++ K E+D F+ T+L++MY++ G
Sbjct: 146 GATQEGKQIHGHVLKLGL--ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTA 203
Query: 269 ---------CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
CLD+A +F + ++ ++W AM G A G+ EA+ M+ V PN
Sbjct: 204 LITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPN 263
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW----GVEPHIKHYSCIVDLLGRAGHLEEA 375
T ++ +AC +G +E G N W G+ +++ + ++D+ + G L++A
Sbjct: 264 ESTMVTVLSACAQSGSLELG-----NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318
Query: 376 YNFIMGIPIKPDAILWRSLLSA 397
+ GI + D I W ++
Sbjct: 319 RDLFEGI-CEKDIISWNVMIGG 339
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 248/472 (52%), Gaps = 30/472 (6%)
Query: 9 CFALLKLKAITTPS--HIKQIHAQLITNA---LKSPPLYAQLIQLYCTKKASPQSTKIVH 63
C ALL+L + +PS KQIHA+ + A L P L L+ + +A P
Sbjct: 18 CVALLRLH-LPSPSVAAAKQIHARALRAAGVPLSHPLLAKHLLFHLASLRAGPPPLLYAV 76
Query: 64 FVFTHFDP-PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
V + P P+ F NT++R + + L D TY L +C R +L
Sbjct: 77 TVLSCLLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAPPDTHTYPPLLQACTRLLAL 136
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNA 180
G +H K G + V V +L+H Y + S +VFD++P+ R+ +WN+
Sbjct: 137 RE---GESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNS 193
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++NG+ + + + L +FR+ L + + P T+V VL+ +++G L G VH
Sbjct: 194 VMNGFAANGRPNE-----VLTIFRETLE--ADLMPDGFTIVSVLTACAEIGALTLGRRVH 246
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHG 299
+ K + + +G AL+D+Y+KCG +++A +F M + V++WT++ G+A +G
Sbjct: 247 VFASKVGLV--GNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNG 304
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G +A+ L M + P +T + AC H GLV++G F+ M+ K+G+ P I+H
Sbjct: 305 FGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHL 364
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLLGRAG +EEA+N+I +P++P+A++WR+LL AC +H + LGE L++L P
Sbjct: 365 GCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDP 424
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YA+ RW D +RK M V PG S+++
Sbjct: 425 --------GHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVE 468
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 217/368 (58%), Gaps = 22/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ L L G+ +H + + G N+ V ++ Y DI S +
Sbjct: 10 DEVTMVSLVPACAQ---LGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCV 223
+VF+++ + +W +M++G AK F +L LFR M + ++P + T+V V
Sbjct: 67 EVFNRIREKDVLSWTSMLSGL------AKSGYFQESLALFRKM--QLHKIEPDEITLVGV 118
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS +Q G L+ G +H ++K + D+ + TALVDMY+KCG +D AL +F RMR +
Sbjct: 119 LSACAQTGALDQGKYIHLLIDK--FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 176
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV TW AM G+A+HG G +AI L D M + P+ VTF +L AC HAGLV+EGL +F
Sbjct: 177 NVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMF 236
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
MK+K+ +EP ++HY C+VDLL RA +++A FI +PIK +++LW +LL AC G
Sbjct: 237 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 296
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
L EK+ + +++L+P+ +C +V LSN+YA +W +RKQMK K +E
Sbjct: 297 FDLAEKIXRRVIELEPD------SCGR--YVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 348
Query: 464 EPGSSILQ 471
PG S ++
Sbjct: 349 TPGCSWIE 356
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 123/231 (53%), Gaps = 17/231 (7%)
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
+ + ++P + TMV ++ +QLG LE G +H Y K + EN + + A++DMY K
Sbjct: 1 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSY-SKELGLDEN-LSVNNAILDMYCK 58
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
C +++A +F+R+REK+VL+WT+M +G+A G E++ L M+ ++P+ +T +
Sbjct: 59 CDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGV 118
Query: 327 FAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+AC G +++G +HL + K+ + + + +VD+ + G ++ A + +
Sbjct: 119 LSACAQTGALDQGKYIHL---LIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRV 175
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ------PEVTFVDVACT 429
+ + W +++ +HG GE + Q++ +VTF+ + C
Sbjct: 176 R-NVFTWNAMIGGLAMHGH---GEDAISLFDQMEXDKLMPDDVTFIALLCA 222
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 200/329 (60%), Gaps = 16/329 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T ++ YA+ + +++FD +P + WNAMI+GY K + AL L
Sbjct: 184 HVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNE-----ALQL 238
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR ML S +P + T+V VLS +QLG +E G +H Y++ + + N V + TALVD
Sbjct: 239 FRRMLR--SSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLN-VRVATALVD 295
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG L++A+ +F + K+++ W AM G A+HG +A+ + +RD G+ P +T
Sbjct: 296 MYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDIT 355
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L AC H+GLVEEG F +M+ ++G++P I+HY C+VDLLGRAG +EEA++ + +
Sbjct: 356 FIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSL 415
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
I PDA++W SLL+AC +H ++ALG+++ L+ + S ++ LSNIYA+
Sbjct: 416 TITPDAVMWVSLLAACRLHKNMALGQRIADFLV--------ANGLANSGMYILLSNIYAA 467
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
+W +V VR MK ++ EPG S ++
Sbjct: 468 VGKWEEVARVRSMMKASGIQKEPGCSAIE 496
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 59/372 (15%)
Query: 100 GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
G LT D + A S AR S ++H V ++G + VA L YA++
Sbjct: 20 GALTADRAASLLAACSTARRAS--------ELHAAVVRKGLDSDRAVAFRLQRAYAASGR 71
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+ + + ++ + + I+ + S+ L L DML + G+ PT T
Sbjct: 72 LDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLH-----LPGLALLSDMLSE--GLLPTAHT 124
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEK--------------TFY---------------MP 250
+ L L L G +H Y K + Y MP
Sbjct: 125 LSASLPACRGLSL---GRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMP 181
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ V TA++ Y+ G LD+A +F + K+ + W AM G HGK NEA++L
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M +P+ VT + +A G VE G L +K+ V+ +++ + +VD+ + G
Sbjct: 242 MLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCG 301
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFV 424
LE+A GI K D ++W ++++ +HGD K ++ +QL+ + +TF+
Sbjct: 302 SLEDAVAVFHGIGNK-DIVVWNAMINGYAMHGD---SRKALEMFVQLRDQGLWPTDITFI 357
Query: 425 DV--ACTSEDFV 434
+ AC+ V
Sbjct: 358 GLLNACSHSGLV 369
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 253/476 (53%), Gaps = 34/476 (7%)
Query: 4 LPGHRCFALLKLKAITTPSHI---KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQST 59
+P + +L L A P+ + ++IH++++ + + LI +Y A S
Sbjct: 443 MPNKITYVIL-LNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMY----ARCGSI 497
Query: 60 KIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
K +F ++ + +I + +++ VF GL + TY L +
Sbjct: 498 KDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKP-NRVTYTSILNA 556
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C+ S + L GR+IH V + G + VA TL++ Y+ + ++VFD+M R
Sbjct: 557 CS---SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+NAMI GY A + AL LF D L + G+KP T + +L+ + G LE+
Sbjct: 614 VAYNAMIGGYA-----AHNLGKEALKLF-DRLQE-EGLKPDKVTYINMLNACANSGSLEW 666
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+H + K Y+ +D +G ALV Y+KCG +ALL+F +M ++NV++W A+ G
Sbjct: 667 AKEIHSLVLKDGYL--SDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGC 724
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A HG+G + ++L + M+ G+KP+ VTF SL +AC HAGL+EEG F +M +G+ P
Sbjct: 725 AQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPT 784
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY C+VDLLGRAG L+E I +P + + +W +LL AC +HG+V + E+ + L
Sbjct: 785 IEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSL 844
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L P+ V +VALS++YA+A W +RK M+ + V EPG S ++
Sbjct: 845 KLDPDNAAV--------YVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIE 892
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 171/357 (47%), Gaps = 28/357 (7%)
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
C + + +F +G++ + TY+ L + F + L G+ +H H+ G
Sbjct: 323 CGHSEIAFEIFQKMQQEGVVP-NRITYINVLNA---FSGPAALKWGKTVHSHILNAGHES 378
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
++ V T L+ YA ++VF+++ R WN MI G + A +
Sbjct: 379 DLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEE-----ASEI 433
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
+ M + G+ P T V +L+ L +G +H + K +M D+ + AL+
Sbjct: 434 YHQMQRE--GMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF--DISVQNALIS 489
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY++CG + +A L+F++M K++++WTAM G+A G G EA+ + M+ G+KPN VT
Sbjct: 490 MYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVT 549
Query: 323 FTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+TS+ AC ++ G + +++ + H+ + +V++ G +++A +
Sbjct: 550 YTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVA--NTLVNMYSMCGSVKDARQ-VFD 606
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTS 430
+ D + + +++ H LG++ K+ +LQ E VT++++ AC +
Sbjct: 607 RMTQRDIVAYNAMIGGYAAHN---LGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 660
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 135/305 (44%), Gaps = 16/305 (5%)
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM--PMRSS 175
R + L GR++H H+ + + + LI+ Y I ++V++++ R+
Sbjct: 150 RCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTV 209
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNAM+ GY + AL L R+M G+ T + +LS LE
Sbjct: 210 HSWNAMVVGYVQYGYIEE-----ALKLLREM--QQHGLALGRATTMRLLSSCKSPSALEC 262
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +H K + DV + +++MY+KCG + A +F +M K+V++WT + G
Sbjct: 263 GREIHVEAMKARLLF--DVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGY 320
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A G A + M+ GV PN +T+ ++ A ++ G + ++ + G E
Sbjct: 321 ADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNA-GHESD 379
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+ + +V + + G ++ + + D I W +++ G+ E+ +I
Sbjct: 380 LAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGN---WEEASEIYH 435
Query: 416 QLQPE 420
Q+Q E
Sbjct: 436 QMQRE 440
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 160/474 (33%), Positives = 238/474 (50%), Gaps = 49/474 (10%)
Query: 25 KQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K+IHA ++ N +++ + + L+ +YC + + VF H + L+N +I
Sbjct: 317 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR----VFDHILGRRIELWNAMIS 372
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R + ++++F + L + T + +C + S IH + K
Sbjct: 373 GYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN---KESIHGYAVKL 429
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF + V L+ Y+ + + +FD M +R +WN MI GY + + N
Sbjct: 430 GFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYS-----N 484
Query: 199 ALVLFRDM---------------LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
ALVL +M KP T++ VL + L + G +H Y
Sbjct: 485 ALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYA 544
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ M +D+ +G+ALVDMY+KCGCL+ + +F+ M KNV+TW + +HGKG E
Sbjct: 545 IRN--MLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEE 602
Query: 304 AIRLLDSM-----RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
A+ L +M R KPN VTF ++FAAC H+GL+ EGL+LF MK GVEP H
Sbjct: 603 ALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDH 662
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVALGEKVGKILLQL 417
Y+C+VDLLGRAG LEEAY + +P + D + W SLL AC +H +V LGE K LL L
Sbjct: 663 YACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHL 722
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+P V + +V LSNIY+SA W VRK M+ V+ EPG S ++
Sbjct: 723 EPNV--------ASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 768
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 24/303 (7%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG----FMFNVLVATTLIHFYASN 157
+ FT V +C+ + L LG+Q+H + + G F N L+A YA
Sbjct: 190 MELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMA-----MYAKL 244
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+ K +F+ R +WN MI+ + SQS + + AL FR M+++ GV+
Sbjct: 245 GRVDDSKALFESFVDRDMVSWNTMISSF-SQSDRFSE----ALAFFRLMVLE--GVELDG 297
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T+ VL S L L+ G +H Y+ + + EN F+G+ALVDMY C +++ +F
Sbjct: 298 VTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS-FVGSALVDMYCNCRQVESGRRVF 356
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRL-LDSMRDCGVKPNAVTFTSLFAAC--CHAG 334
+ + + W AM +G A +G +A+ L ++ ++ G+ PN T S+ AC C A
Sbjct: 357 DHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAF 416
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
+E +H + K G + + ++D+ R G ++ + + ++ D + W ++
Sbjct: 417 SNKESIHGY---AVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWNTM 472
Query: 395 LSA 397
++
Sbjct: 473 ITG 475
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 139/305 (45%), Gaps = 24/305 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNVLVATTLIHFYASNKDISSG 163
D+F + L + + L T G QIH K G+ +V VA TL++ Y I
Sbjct: 91 DNFAFPAVLKAVSGLQDLKT---GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDV 147
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
KVFD++ R +WN+ I C K + AL FR M ++ ++ + T+V V
Sbjct: 148 CKVFDRITDRDQVSWNSFIAALCRFEKWEQ-----ALEAFRAMQME--NMELSSFTLVSV 200
Query: 224 LSVSSQLGL---LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
S LG+ L G +HGY + + + F AL+ MY+K G +D++ +F
Sbjct: 201 ALACSNLGVMHGLRLGKQLHGY---SLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESF 257
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
++++++W M + + + +EA+ M GV+ + VT S+ AC H ++ G
Sbjct: 258 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 317
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSA 397
+ + + + S +VD+ +E ++ I+G I+ LW +++S
Sbjct: 318 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIE----LWNAMISG 373
Query: 398 CNVHG 402
+G
Sbjct: 374 YARNG 378
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 9/172 (5%)
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
P RS+A+W + +S+ + A+ + +M V SG +P + VL S L
Sbjct: 53 PSRSTASWVDAL-----RSRTRSNDFREAISTYIEMTV--SGARPDNFAFPAVLKAVSGL 105
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
L+ G +H K F + V + LV+MY KCG + + +F R+ +++ ++W +
Sbjct: 106 QDLKTGEQIHAAAVK-FGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNS 164
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+ K +A+ +M+ ++ ++ T S+ AC + G++ GL L
Sbjct: 165 FIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVM-HGLRL 215
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 241/460 (52%), Gaps = 29/460 (6%)
Query: 20 TPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T ++K+ HAQ++ + P + A+LI Y + K VF + P++F N
Sbjct: 32 TTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARK----VFDNLSEPDVFCCN 87
Query: 79 TLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+I+ P +++ V+ +G+ T + +TY F L +C + GR IH H
Sbjct: 88 VVIKVYANADPFGEALKVYDAMRWRGI-TPNYYTYPFVLKACGAEGASKK---GRVIHGH 143
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K G ++ V L+ FYA +D+ +KVFD++P R +WN+MI+GY
Sbjct: 144 AVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGY---- 199
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
+A++LF DML D S P T V VL +Q + G +H Y+ KT D
Sbjct: 200 -VDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKT--RMGLDS 256
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+GT L+ +YS CG + A IF R+ +++V+ W+A+ HG EA+ L +
Sbjct: 257 AVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFRQLVGA 316
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G++P+ V F L +AC HAGL+E+G HLF+ M++ +GV HY+CIVDLLGRAG LE+
Sbjct: 317 GLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMET-YGVAKSEAHYACIVDLLGRAGDLEK 375
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A FI +PI+P ++ +LL AC +H ++ L E + L L P+ + +V
Sbjct: 376 AVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPD--------NAGRYV 427
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
L+ +Y AERW D VRK +K K ++ G S ++ +
Sbjct: 428 ILAQMYEDAERWQDAARVRKVVKDKEIKKPIGYSSVELES 467
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 253/464 (54%), Gaps = 33/464 (7%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K +H Q++ L S LY + L+ +Y A+ K F+F N ++ ++I
Sbjct: 99 KVLHGQVVKYMLHSD-LYIETTLLNMY----AACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P +++L++ G + D+ T + +CA L L +G ++H H+ +
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGF-SPDEVTMATLVSACA---ELKDLGVGMKLHSHIREM 209
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
++ + L++ YA D+ + ++VFDQ+ + W+A+I GY ++ +
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTE----- 264
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL LFR+ + S ++P + T++ V+S +QLG LE G VH Y+ +T + V +
Sbjct: 265 ALQLFRE-VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRT--QKGHSVSLNN 321
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L+DM+SKCG +D A IF M K++++W +M G+A+HG G EA+ M+ ++P
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQP 381
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ +TF + AC HAGLV+EG LF +++ +GV +HY C+VDLL RAG L EA F
Sbjct: 382 DEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREF 441
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +P++PD +W S+L AC V+ ++ LGE+ + LL+L+P V ++ LSN
Sbjct: 442 IRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGV--------YILLSN 493
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSS--ILQTTTHYTLDG 480
IYA + W +V+ VR+ M K ++ PG S ++ H L G
Sbjct: 494 IYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAG 537
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF H ++ +N+++R P+ ++ + + + D FT+ L CA
Sbjct: 34 VFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+G+ +H V K ++ + TTL++ YA+ D+ S + +F++M R+ W +
Sbjct: 94 EFK---VGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+GY C AL+L++ M D G P + TM ++S ++L L G +H
Sbjct: 151 MISGYMKNH-----CPNEALLLYKKMEED--GFSPDEVTMATLVSACAELKDLGVGMKLH 203
Query: 241 GYMEKTFYMPENDVFI----GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
++ E D+ I G+ALV+MY+KCG L A +F ++ +K+V W+A+ G
Sbjct: 204 SHIR------EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYV 257
Query: 297 IHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEP 354
+ + EA++L + ++PN VT ++ +AC G +E G + D + +++ G
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG-EKVGKI 413
+ + ++D+ + G ++ A + K D I W S+++ +HG LG E + +
Sbjct: 318 SLN--NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALHG---LGREALAQF 371
Query: 414 LL----QLQP-EVTFVDV--ACTSEDFV 434
L LQP E+TF+ V AC+ V
Sbjct: 372 HLMQTTDLQPDEITFIGVLTACSHAGLV 399
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 147/414 (35%), Positives = 226/414 (54%), Gaps = 28/414 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPP---QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
VF N+ + T+I D L F + + + + FTY L +C +
Sbjct: 22 VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFN 81
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L RQ+H + K G +V V + LI Y+ ++ + +VFD+M W+++
Sbjct: 82 L------RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSI 135
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I G+ S + AL LF+ M +G TT+ VL + L LLE G VH
Sbjct: 136 IAGFAQNSDGDE-----ALRLFKRM--KRAGFLAQQTTLTSVLRACTGLALLELGRQVHV 188
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
++ K + D+ + AL+DMY KCG L++A +F RM EK+V++W+ M G+A +G
Sbjct: 189 HVLKY----DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYS 244
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
EA++L +SM+ G+KPN VT + AC HAGLVEEGL+ F +MK +G++P +HY C
Sbjct: 245 KEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGC 304
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
++DLLGRAG L EA + I + +PDA+ WR+LL+AC VH +V + K +L+L P+
Sbjct: 305 MIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQ- 363
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
+ +V LSNIYA+ +RW DV VR+ M + ++ EPG S ++ +
Sbjct: 364 -------DAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQ 410
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 128/271 (47%), Gaps = 37/271 (13%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F+ N+L I+ Y + + VFD+MP R+ +W MI+ Y + K D A
Sbjct: 1 FLINIL-----INMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAY--SAAKLNDKALEF 53
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL-GLLEFGACVHGYMEKTFYMPENDVFIGT 258
LVL ML + GV+P T VL L L + C+ ++DVF+ +
Sbjct: 54 LVL---MLRE--GVRPNMFTYSSVLRACDGLFNLRQLHCCI------IKIGLDSDVFVRS 102
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+D+YS+ G L+NAL +F M +++ W+++ G A + G+EA+RL M+ G
Sbjct: 103 ALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLA 162
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY-------SCIVDLLGRAGH 371
T TS+ AC L+E G V H+ Y + ++D+ + G
Sbjct: 163 QQTTLTSVLRACTGLALLELGRQ----------VHVHVLKYDQDLILNNALLDMYCKCGS 212
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
LE+A N + ++ D I W ++++ +G
Sbjct: 213 LEDA-NAVFVRMVEKDVISWSTMIAGLAQNG 242
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
F+ L++MY K G L +A +F +M ++NV++WT M + + ++A+ L M
Sbjct: 1 FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGH 371
GV+PN T++S+ AC +GL + K G++ + S ++D+ R G
Sbjct: 61 GVRPNMFTYSSVLRAC-------DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGE 113
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALG-----EKVGKILLQLQPEVTFV 424
LE A + + D ++W S+++ A N GD AL ++ G L Q +T V
Sbjct: 114 LENALR-VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAG--FLAQQTTLTSV 170
Query: 425 DVACTS 430
ACT
Sbjct: 171 LRACTG 176
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 248/463 (53%), Gaps = 35/463 (7%)
Query: 24 IKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
++Q HA L+ T +S L +L+ L C + + ++ F P+ FLFN+LI+
Sbjct: 26 LQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRL----FRSVSDPDSFLFNSLIK 81
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ D+VL + + ++ +T+ + +CA LS L +G +H HV
Sbjct: 82 ASSKFGFSLDAVLFYRRMLLSRIVP-STYTFTSVIKACA---DLSLLCIGTLVHSHVFVS 137
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G+ + V LI FYA + +KVFD+MP RS WN+MI+GY + A
Sbjct: 138 GYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGY-----EQNGLANE 192
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ +F M S V+P T V VLS SQLG L+FG +H + + +V + T
Sbjct: 193 AVEVFNKM--RESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITM--NVVLAT 248
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+LV+M+S+CG + A +F M E NV+ WTAM +G +HG G EA+ + M+ GV P
Sbjct: 249 SLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVP 308
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N+VTF ++ +AC HAGL++EG +F +MK ++GV P ++H+ C+VD+ GR G L EAY F
Sbjct: 309 NSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQF 368
Query: 379 IMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
+ G + D + +W ++L AC +H + LG +V + L+ +PE +V
Sbjct: 369 VKG--LNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPE--------NPGHYVL 418
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
LSN+YA A R VESVR M + ++ + G S + L
Sbjct: 419 LSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYL 461
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 209/367 (56%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ A+ CA ++ + G QIH + G+ +V + L++ YA I
Sbjct: 445 DNIGLASAISGCA---GINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
F++M ++ T N +++G+ +QS ++ AL +F M +D SGVK T V L
Sbjct: 502 SSFEEMELKDGITGNGLVSGF-AQSGLHEE----ALKVF--MRMDQSGVKHNVFTFVSAL 554
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S S+ L ++ G +H + KT + E +V G AL+ +Y KCG ++A + FS M E+N
Sbjct: 555 SASANLAEIKQGKQIHARVIKTGHSFETEV--GNALISLYGKCGSFEDAKMEFSEMSERN 612
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W + T + HG+G EA+ L D M+ G+KPN VTF + AAC H GLVEEGL F
Sbjct: 613 EVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFK 672
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M ++G+ P HY+C++D+ GRAG L+ A FI +PI DA++WR+LLSAC VH ++
Sbjct: 673 SMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNI 732
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GE K LL+L+P S +V LSN YA E+W + + VRK M+ + V E
Sbjct: 733 EVGEFAAKHLLELEPH--------DSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKE 784
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 785 PGRSWIE 791
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 166/364 (45%), Gaps = 22/364 (6%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S ++ VF + FNTLI +C + ++ +F GL + D T L
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGL-SPDCVTISSLL 251
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA SL L G Q+H ++ K G + ++ +L+ Y D+ + +F+
Sbjct: 252 AACA---SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ WN M+ + + AK + LF M +G++P T C+L + +
Sbjct: 309 NVVLWNLMLVAFGQINDLAK-----SFELFCQM--QAAGIRPNQFTYPCILRTCTCTREI 361
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+ G +H KT + E+D+++ L+DMYSK G L+ A + ++EK+V++WT+M
Sbjct: 362 DLGEQIHSLSVKTGF--ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIA 419
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G H +A+ M+ CG+ P+ + S + C + +GL + + G
Sbjct: 420 GYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVS-GYS 478
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
+ ++ +V+L R G + EA++ + +K D I L+S G L E+ K+
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEMELK-DGITGNGLVSGFAQSG---LHEEALKV 534
Query: 414 LLQL 417
+++
Sbjct: 535 FMRM 538
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH RG +V LI Y+ N + ++VF+++ R + +W AM++GY
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL L+R M +GV PT + VLS ++ L G +H K +
Sbjct: 123 -----LGEEALGLYRQM--HRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFC 175
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E +F+G A++ +Y +CG A +F M ++ +T+ + +G A G G A+ + +
Sbjct: 176 SE--IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFE 233
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M+ G+ P+ VT +SL AAC G +++G L + K G+ ++DL +
Sbjct: 234 EMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYL-FKAGISSDYIMEGSLLDLYVKC 292
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
G +E A I + + +LW +L A D+A
Sbjct: 293 GDVETAL-VIFNSSDRTNVVLWNLMLVAFGQINDLA 327
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 136/294 (46%), Gaps = 16/294 (5%)
Query: 111 FALGSCARFCSLSTLWL-GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ L S C+ + L+ GR IH K GF + V +I Y ++VF
Sbjct: 144 YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCD 203
Query: 170 MPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
MP R + T+N +I+G+ C + +AL +F +M SG+ P T+ +L+
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGE-------HALEIFEEM--QFSGLSPDCVTISSLLAAC 254
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG L+ G +H Y+ K +D + +L+D+Y KCG ++ AL+IF+ NV+
Sbjct: 255 ASLGDLQKGTQLHSYLFKAGI--SSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W M ++ L M+ G++PN T+ + C ++ G + ++
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH-SLS 371
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
K G E + ++D+ + G LE+A ++ + + D + W S+++ H
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSWTSMIAGYVQH 424
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 227/443 (51%), Gaps = 32/443 (7%)
Query: 39 PPLYAQLIQLYCTKKASPQSTKIVHFVFTHF-DPPNLFLFNTLIR---------CTPPQD 88
P L +L+ L A P VF P + +NTL+R +
Sbjct: 57 PALVTRLLTLCTGPGAGPAHLAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAA 116
Query: 89 SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT 148
+V VF + +G+ D +T+V L +CA + GRQ H K G + V
Sbjct: 117 AVRVFVRMLEEGVAP-DTYTFVSLLKACA---AARAGEHGRQAHAVAVKLGAAGHDYVRP 172
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
TLI+ YA D + + F + ++NAMI S+ + ALVLFR+M
Sbjct: 173 TLINMYAECGDARAARVTFGRADGDCVVSYNAMIAAAVRSSRPGE-----ALVLFREM-- 225
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
G+ PT T++ VLS + LG L+ G +H Y+ K + V + TALVDMY+KCG
Sbjct: 226 QAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGL--GSLVKVSTALVDMYAKCG 283
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
L++A+ +F M ++ W+ M A HG G EAI L + M+ G+KP+ +TF L
Sbjct: 284 SLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLY 343
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC H+GLV EGL FD+MK G+ P IKHY C+ DLL R+G LE AY FI +PI P
Sbjct: 344 ACSHSGLVSEGLRYFDDMKDH-GIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP 402
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
ILWR+LLSAC HGDV LG++V + +L+L D+V SN+ A+ W +
Sbjct: 403 ILWRTLLSACGGHGDVELGKRVFERILELDDS--------HGGDYVIFSNLCANTGYWEE 454
Query: 449 VESVRKQMKVKRVETEPGSSILQ 471
+ VRK M K V PG S ++
Sbjct: 455 MNRVRKLMSDKGVVKVPGCSSIE 477
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 245/460 (53%), Gaps = 37/460 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ H Q +S + LI +Y T + K VF N+ + ++IR
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK----VFDEIPKRNIVSWTSMIRG 151
Query: 84 TPPQ----DSVLVFAYWV-----SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
D+V +F + + D V + +C+R ++ L IH
Sbjct: 152 YDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSR---VAAKGLTESIHSF 208
Query: 135 VTKRGFMFNVLVATTLIHFYASNKD--ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
V KRGF V V TL+ YA + ++ +K+FDQ+ + ++N++++ Y +QS +
Sbjct: 209 VIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY-AQSGMS 267
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-E 251
+ A +FR L+ V T+ VL S G L G C+H ++ M E
Sbjct: 268 NE----AFDVFR-RLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIH---DQVIRMGLE 319
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+DV +GT+++DMY KCG ++ A L F RM+ KNV +WTAM G +HG +A+ L +M
Sbjct: 320 DDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAM 379
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
D GV+PN +TF S+ AAC HAGL + G H F+ MK ++GVEP ++HY C+VDLLGRAG
Sbjct: 380 IDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L++AY+ I + ++PD+I+W SLL+AC +H +V L E L +L P C
Sbjct: 440 LQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPS------NCGY- 492
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ LS+IYA + RW DVE VR MK + + PG S+L+
Sbjct: 493 -YMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLE 531
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A FCS+S L +H + N+ TTL + Y D+ S
Sbjct: 8 ALFCSVSRL-------LHTERHTERQNL---TTLFNRYVDKTDVFS-------------- 43
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WN++I A+ A A R + + PT ++ C + S L L+
Sbjct: 44 -WNSVIADLARSGDSAE--ALRAFSSMRKL-----SLYPTRSSFPCAIKACSSL--LDIF 93
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+ + + + ++D+F+ +AL+ MYS CG L++A +F + ++N+++WT+M G
Sbjct: 94 SGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153
Query: 297 IHGKGNEAIRLLDSM------RDCGVKPNAVTFTSLFAACCH--AGLVEEGLHLF 343
++G +A+ L + D + +++ S+ +AC A + E +H F
Sbjct: 154 LNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSF 208
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 258/494 (52%), Gaps = 55/494 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LKA TT S ++Q+HA++I L +I + T S + VF P+
Sbjct: 80 LKACTTTSTLEQVHARIIRKGLHQDHF---IISQFLTLCNSLSNFSYTTSVFNGVSSPST 136
Query: 75 FLFNTLIRCTPPQDSV-LVFAYWV--SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
L+NT I+ SV L + ++ + D FTY + +C++ C + G
Sbjct: 137 VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE---GVAF 193
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS---- 187
H + G +V V T+LI Y +I +KVFD+M R+ +W AMI GY S
Sbjct: 194 HGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDL 253
Query: 188 -QSKKAKD-------CAFNALV--------------LFRDM----------LVDVSG-VK 214
+++K D ++NA++ +F +M +SG VK
Sbjct: 254 VEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVK 313
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P + MV ++S SQ+G LE V Y+ K+ + + + AL+DM +KCG +D A
Sbjct: 314 PDEFIMVSLMSACSQMGSLELAKWVDDYVRKS-SIDVHRAHVIAALIDMNAKCGSMDRAT 372
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M +++++++ +M G++IHG G +A+ L M + G+ P+ V FT + AC AG
Sbjct: 373 KLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAG 432
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV+EG + F++MK+ + + P HY+C+VDLLGRAG L+EAY + +P++P A W +L
Sbjct: 433 LVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGAL 492
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC +H D+ LGE V L +L+P+ + ++V LSNIYA+AE+W DV +R
Sbjct: 493 LGACKLHCDIELGEVVADQLFELEPQ--------NAGNYVLLSNIYAAAEQWLDVSLLRN 544
Query: 455 QMKVKRVETEPGSS 468
+M+ + + PG S
Sbjct: 545 KMRERGIRKIPGCS 558
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 136/316 (43%), Gaps = 42/316 (13%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLG-------RQIHVHVTKRGFMFNVLVATTLIHFY 154
LTF D Y+ L S S+STL Q+H + ++G + + + +
Sbjct: 58 LTFPD--YLPTLRSFDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLC 115
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
S + S VF+ + S+ WN I GY + + LF M S
Sbjct: 116 NSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSL-----TVSLFIRM--KRSDAV 168
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P T ++ S++ ++ G HG + DVF+ T+L+D+Y KCG + A
Sbjct: 169 PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGV--GGDVFVMTSLIDLYGKCGEILCAR 226
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M E+NV++WTAM G A EA +L D M + NAV++ ++ + G
Sbjct: 227 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE----KNAVSWNAIISGYVKCG 282
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
+ +FD M PH D++ A++ ++ +KPD + SL
Sbjct: 283 DLRSARKMFDEM-------PHRNR-----DVV--------AWSALISGNVKPDEFIMVSL 322
Query: 395 LSACNVHGDVALGEKV 410
+SAC+ G + L + V
Sbjct: 323 MSACSQMGSLELAKWV 338
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 210/364 (57%), Gaps = 20/364 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T L CA+ L L +G +I + N++V+T ++ Y + G+
Sbjct: 227 NEITLATVLSICAK---LGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGR 283
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD M R TW+AMI GY + + AL LF +M + +KP D T+V VL
Sbjct: 284 LVFDHMARRDVVTWSAMIAGYAQNGRSNE-----ALELFENM--KSAQIKPNDVTLVSVL 336
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG +E G + Y+E + ++V++ +AL+ MYSKCG + A IF ++ +++
Sbjct: 337 SACAQLGSVETGERIGSYVESRGLI--SNVYVASALLGMYSKCGNIIKARQIFDKLPQRD 394
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW +M G+AI+G +AI L + M++ VKPN +TF L AC HAG VE GL F
Sbjct: 395 NVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFR 454
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+S + P+I+H++CIVDL R+G L +AY FI + ++P+ ++W +LLSA +H +V
Sbjct: 455 SMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNV 514
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E GK LL+L+P+ S ++V LSNIYASA RW + VRK MK KRV+
Sbjct: 515 ELAELAGKKLLELEPD--------NSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKA 566
Query: 465 PGSS 468
S
Sbjct: 567 AAYS 570
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 183/368 (49%), Gaps = 54/368 (14%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS---- 162
FT SCA SL + +G+Q+H V + GF +V LI+FYA D+ S
Sbjct: 97 FTIPPIFKSCA---SLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELI 153
Query: 163 ---------------------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+++FD+M RS +WNAMI+ Y K
Sbjct: 154 FDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHK-- 211
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
++F+ M ++ +P + T+ VLS+ ++LG LE G + + +++
Sbjct: 212 ---GWIIFQRMQDEM--CEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNL--GSNMI 264
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ TA+++MY KCG +D+ L+F M ++V+TW+AM G A +G+ NEA+ L ++M+
Sbjct: 265 VSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQ 324
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KPN VT S+ +AC G VE G + ++S+ G+ ++ S ++ + + G++ +A
Sbjct: 325 IKPNDVTLVSVLSACAQLGSVETGERIGSYVESR-GLISNVYVASALLGMYSKCGNIIKA 383
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHG----DVALGEKVGKILLQLQP-EVTFVDV--AC 428
+P + D + W S++ ++G +AL ++ +I +++P +TFV + AC
Sbjct: 384 RQIFDKLP-QRDNVTWNSMIMGLAINGFAEDAIALYNRMKEI--EVKPNNITFVGLMTAC 440
Query: 429 TSEDFVAL 436
T V L
Sbjct: 441 THAGHVEL 448
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 206/365 (56%), Gaps = 21/365 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T V L +CAR L T G+ IH V +R F N+++ ++ Y N K +F
Sbjct: 205 TLVSVLAACARNGDLCT---GKGIH-GVIERRFKVNLVLGNAMLDMYVKNGCFYEAKNIF 260
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D++P R +W MI G QS K +L LF ++ G+ P + VLS
Sbjct: 261 DELPTRDIVSWTIMITGLV-QSDHPK----QSLELFS--MMRTLGISPDAIILTSVLSAC 313
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG L+FG VH Y+ + + D+ IGTA+VDMY+KCGC++ AL IF M ++N T
Sbjct: 314 ASLGTLDFGTWVHEYINQRGI--KWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFT 371
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W A+ G+A+HG +EA+ L + M GVKPN +TF ++ ACCH GLV+EG FDNM
Sbjct: 372 WNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMS 431
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+ + P ++HY C++DL RAG LEEA +P+KPD ++W LL+AC G++ L
Sbjct: 432 KLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELS 491
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
++ +L+L + + V FV LSNI A +RW +V +R+ MK + V PGS
Sbjct: 492 HRIQDYILELDHDDSGV--------FVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGS 543
Query: 468 SILQT 472
S+++
Sbjct: 544 SVIEV 548
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 202/418 (48%), Gaps = 45/418 (10%)
Query: 25 KQIHAQLITNAL--------KSPPLYAQLIQL--YCTKKASPQSTKIVHFVFTHFDPPNL 74
+QIHAQL+T+ L K +A ++ Y +T++ F F
Sbjct: 22 RQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTRLGSFPFNS------ 75
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
L N + PQ +V V+ V G + D FT+ L +C+ F GRQ+H
Sbjct: 76 -LINGYVGGEFPQMAVSVYRRMVRDGFVP-DMFTFPVLLKACSNFSGSRE---GRQVHGV 130
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
V K G + + V +LI Y + D S KVFD+M +R +WN++I+G+ KA
Sbjct: 131 VVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGF----MKAGH 186
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
V FR V+P+ TT+V VL+ ++ G L G +HG +E+ F + ++
Sbjct: 187 FDEAISVFFR------MDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKV---NL 237
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+G A++DMY K GC A IF + +++++WT M TG+ +++ L MR
Sbjct: 238 VLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTL 297
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKS-KWGVEPHIKHYSCIVDLLGRAGH 371
G+ P+A+ TS+ +AC G ++ G +H + N + KW + HI + IVD+ + G
Sbjct: 298 GISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDI--HIG--TAIVDMYAKCGC 353
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV--ALGEKVGKILLQLQP-EVTFVDV 426
+E A + + + W +LL +HG V AL I+ ++P E+TF+ +
Sbjct: 354 IEMALKIFYSMS-QRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAI 410
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 247/489 (50%), Gaps = 48/489 (9%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF 75
K T+ +++IHAQLI L + A + +CT A + VFT PNLF
Sbjct: 4 KNCTSMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAG--DINYAYLVFTQIRNPNLF 61
Query: 76 LFNTLIR----CTPPQDSVLVFAYWVSKGLLTF-DDFTYVFALGSCARFCSLSTLWLGRQ 130
++NT+IR + P +++ +F + T TY + A+ L G Q
Sbjct: 62 VWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQ---LGLAHEGAQ 118
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
+H V K G + + T+++ Y + + +++FD TWN MI G C +
Sbjct: 119 LHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGE 178
Query: 189 SKKA------------------------KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ K F A+ LF M + G+KP++ TMV +L
Sbjct: 179 IDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEE--GIKPSEFTMVSLL 236
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ + LG L G +H Y+ K + N + I TA++DMYSKCG +D AL +F +K
Sbjct: 237 NACACLGALRQGEWIHDYIVKNNF-ALNSIVI-TAIIDMYSKCGSIDKALQVFKSAPKKG 294
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ W ++ G+A+ G+GNEA+RL + +KP+ V+F + AC HAG+V+ F
Sbjct: 295 LSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFL 354
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M + +EP IKHYSC+VD+LGRAG LEEA I +P+ PDAI+W SLLS+C +G++
Sbjct: 355 LMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNI 414
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ ++ K + +L P S F+ LSN+YA+ + + R +K K+++ E
Sbjct: 415 EMAKQAAKRVNELDPN--------ESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKE 466
Query: 465 PGSSILQTT 473
PG S+++
Sbjct: 467 PGCSLIEVN 475
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 153/465 (32%), Positives = 254/465 (54%), Gaps = 27/465 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + P+ + Q A L+ + L + PL + A +V + P +
Sbjct: 34 LERSSAPAAVLQSLAFLLKSGLHANPLVLTRLFASSAAAAPALLEPLVAALLRPSVPIDA 93
Query: 75 FLFNTLIRC---TP-PQDSVLVFAYW--VSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
FL NTLIR +P P + A++ + + + + FT+ F L +CA + G
Sbjct: 94 FLVNTLIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGV--G 151
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
Q H K GF + V+ TLIH Y+ + + + VFD+M S TW+AMI GY
Sbjct: 152 LQAHAAALKFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTWSAMIGGYV 211
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ +A+ LFR+M SGV+P + T++ VL+ ++ LG LE V ++E+
Sbjct: 212 RGGLSS-----DAVGLFREM--QASGVRPDEVTVIGVLAAAADLGALELARWVGRFVERE 264
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
V + AL+D +KCG +D A+ +F M E+ V++WT++ +A+ G+G EA+
Sbjct: 265 GI--GKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALAMEGRGKEAVA 322
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ ++M+ GV+P+ V F + AC HAG+V+EG FD+MK ++G++P I+HY C+VD+
Sbjct: 323 VFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMF 382
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG +E A FI +P+KP+ I+WR+L++AC HG + LGE + + LL P
Sbjct: 383 GRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEYP------- 435
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++V LSN+YA +RW + +R++M + ++ PG S+++
Sbjct: 436 -AHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVE 479
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 155/459 (33%), Positives = 234/459 (50%), Gaps = 29/459 (6%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLF 75
++T S Q+HAQ + S + LI +Y K +VH V + PN
Sbjct: 113 SLTALSQGLQVHAQSLKLGCVSVSFVSNALISMY-MKCGLCTDALLVHNVMS---EPNAV 168
Query: 76 LFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+N LI P+ + F KG D FT+ LG C S W G Q+
Sbjct: 169 SYNALIAGFVENQQPEKGIEAFKVMRQKGFAP-DRFTFSGLLGICT---SYDDFWRGMQL 224
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H + K + + +I Y+ I +KVF + + +WN ++ C
Sbjct: 225 HCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDH 284
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
+ AL +FRDML DV VKP D T VL+ + L + G +HG++ +T
Sbjct: 285 ER-----ALRVFRDML-DVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRT--RQY 336
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV + ALV+MY+KCG + N+ +F R ++N+++W + HG G A+ + M
Sbjct: 337 QDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKM 396
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ G+ P++VTF L AC HAGLVEEG F++M+ +G+ P+I+H+SC++DLLGRAG
Sbjct: 397 KTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGR 456
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L+EA ++ +P D I+ SLLSAC +HGD+ +GE + LL+LQP T+
Sbjct: 457 LQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEHLATQLLKLQP--------VTTS 508
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+V LSN+YAS E W V K +K ++ EPG S++
Sbjct: 509 PYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLI 547
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 133/288 (46%), Gaps = 15/288 (5%)
Query: 112 ALGSCARFCSLSTLWL-GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
A+GS C+ +L G +H K G + +++V+ +I+ Y+ ++ +++FD+M
Sbjct: 5 AIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEM 64
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
R+ +W+A+I+GY + AL LF M + P + V+S + L
Sbjct: 65 SDRNLVSWSAIISGYDQTGQ-----PLLALNLFSQMR-----IVPNEYVFASVISACASL 114
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
L G VH K + + F+ AL+ MY KCG +ALL+ + M E N +++ A
Sbjct: 115 TALSQGLQVHAQSLKLGCVSVS--FVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNA 172
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ G + + + I MR G P+ TF+ L C G+ L M K
Sbjct: 173 LIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQM-IKL 231
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+E + I+ + + +EEA + G+ + D I W +L++AC
Sbjct: 232 NLEDSAFIGNVIITMYSKFNLIEEAEK-VFGLIKEKDLISWNTLVTAC 278
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 216/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T+V L + F L+ + GR IH V K GF +++ +L+ YA ++
Sbjct: 421 DSVTFVLLL---SIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLL 477
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVF M +WN +I + S DC + +M + G+ P + T++ +L
Sbjct: 478 KVFSYMSAHDIISWNTVI----ASSVHFDDCTV-GFQMINEMRTE--GLMPDEATVLGIL 530
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ S L + G +HGY+ K+ + E++V IG AL++MYSKCG L+N + +F M+EK+
Sbjct: 531 PMCSLLAVRRQGKEIHGYIFKSGF--ESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKD 588
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWTA+ + ++G+G +A++ M GV P++V F + AC H+G+V+EGL FD
Sbjct: 589 VVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFD 648
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MK+ + +EP ++HY+C+VDLL R+G L +A FI+ +P+KPDA LW +LLSAC G+
Sbjct: 649 RMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNT 708
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ ++V K +L+L + T +V +SNIYA+ +W V++VR MK K ++ E
Sbjct: 709 NIAQRVSKKILELNSDDTGY--------YVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760
Query: 465 PGSSILQ 471
PGSS ++
Sbjct: 761 PGSSWIE 767
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 197/422 (46%), Gaps = 27/422 (6%)
Query: 11 ALLK-LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTH 68
+LLK L + ++ +H+ +IT+ L +++ +LI Y K S VF
Sbjct: 24 SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVS----VFRS 79
Query: 69 FDPPN-LFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
P N ++L+N++IR L + + + L D FT+ + SCAR L
Sbjct: 80 ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLE- 138
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
LG +H H + GF ++ + LI Y+ D+ + + VF++M R S +WN++I+G
Sbjct: 139 --LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
YCS + A + FR ++G+ P TM VL L ++ G VHG +E
Sbjct: 197 YCSNG--FWEDALDMYHKFR-----MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIE 249
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
K DV IG L+ MY K L A +FS+M K+ +TW M G A G+ +
Sbjct: 250 KIGI--AGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
++L M D G P+ ++ TS AC +G ++ G + + G E + ++D
Sbjct: 308 VKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILID 365
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL-LQLQPE-VT 422
+ + G L A K D++ W SL++ G G + K++ ++ +P+ VT
Sbjct: 366 MYAKCGDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVT 424
Query: 423 FV 424
FV
Sbjct: 425 FV 426
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 146/295 (49%), Gaps = 13/295 (4%)
Query: 110 VFALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
+ ++ S R C S L +G+ +H ++ GF + + LI YA D+ + ++VFD
Sbjct: 322 MLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFD 381
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ S TWN++INGY +QS K+ L F+ M ++ KP T V +LS+ S
Sbjct: 382 TTKCKDSVTWNSLINGY-TQSGYYKE----GLESFKMMKMER---KPDSVTFVLLLSIFS 433
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
QL + G +H + K + E ++ IG +L+D+Y+KCG +D+ L +FS M ++++W
Sbjct: 434 QLADINQGRGIHCDVIKFGF--EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+ ++++ MR G+ P+ T + C + +G + +
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYI-F 550
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
K G E ++ + ++++ + G LE + K D + W +L+SA ++G+
Sbjct: 551 KSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK-DVVTWTALISAFGMYGE 604
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 226/411 (54%), Gaps = 24/411 (5%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF ++ + ++I R ++V +F +G+ + D +T L CAR+
Sbjct: 202 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYR 260
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L G+++H + + F++ V+ L+ YA + + VF +M ++ +WN
Sbjct: 261 LLDE---GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 317
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I GY +K+C N + ++L++ P + T+ CVL + L + G +H
Sbjct: 318 IIGGY------SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 371
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+ + Y +D + +LVDMY+KCG L A ++F + K++++WT M G +HG
Sbjct: 372 GYIMRNGYF--SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 429
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EAI L + MR G++ + ++F SL AC H+GLV+EG F+ M+ + +EP ++HY+
Sbjct: 430 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 489
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVD+L R G L +AY FI +PI PDA +W +LL C +H DV L EKV + + +L+PE
Sbjct: 490 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 549
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
T +V ++NIYA AE+W V+ +RK++ + + PG S ++
Sbjct: 550 NTGY--------YVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 592
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 21/325 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR--FCSLSTLWLGRQIHV 133
L N L + S+ +F +S G+ D +T+ SC F SL ++ G Q+H
Sbjct: 15 LMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTF-----SCVSKSFSSLRSVHGGEQLHG 68
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ K GF V +L+ FY N+ + S +KVFD+M R +WN++INGY S K
Sbjct: 69 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 128
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
L +F MLV SG++ T+V V + + L+ G VH K + E D
Sbjct: 129 -----GLSVFVQMLV--SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE-D 180
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F T L+DMYSKCG LD+A +F M +++V+++T+M G A G EA++L + M +
Sbjct: 181 RFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK-SKWGVEPHIKHYSCIVDLLGRAGHL 372
G+ P+ T T++ C L++EG + + +K + G + + + ++D+ + G +
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSM 297
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSA 397
+EA + +K D I W +++
Sbjct: 298 QEAELVFSEMRVK-DIISWNTIIGG 321
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 227/416 (54%), Gaps = 38/416 (9%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSL 122
+F F P++ +N +I + S G L+ F + G+ R +L
Sbjct: 278 LFREFRKPDIVAYNAMIHG------------YTSNGETELSLSLFKELMLSGARLRSSTL 325
Query: 123 STL-------WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
+L L IH + K F+ + V+T L Y+ +I S +K+FD+ P +S
Sbjct: 326 VSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNAMI+GY +Q+ +D A+ LFR+M S P T+ C+LS +QLG L
Sbjct: 386 PSWNAMISGY-TQNGLTED----AISLFREM--QKSEFSPNPVTITCILSACAQLGALSL 438
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH + T + E+ +++ TAL+ MY+KCG + A +F M +KN +TW M +G
Sbjct: 439 GKWVHDLVRSTDF--ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGY 496
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG+G EA+ + M + G+ P VTF + AC HAGLV+EG +F++M ++G EP
Sbjct: 497 GLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPS 556
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+KHY+C+VD+LGRAGHL+ A FI + I+P + +W +LL AC +H D L V + L
Sbjct: 557 VKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLF 616
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L P+ +V V LSNI+++ +P +VR+ K +++ PG ++++
Sbjct: 617 ELDPD----NVGY----HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 20/327 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
K T+ SH+ Q HAQ+I + ++ L +L Q + + + +F P+
Sbjct: 27 FKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQ----RLSDLGAIYYARDIFLSVQRPD 82
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+FLFN L+R P S+ VFA+ L + TY FA+ + + F GR
Sbjct: 83 VFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA---GR 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH G +L+ + ++ Y + +KVFD+MP + + WN MI+GY
Sbjct: 140 VIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY---- 195
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + ++ +FRD L++ S + TT++ +L ++L L G +H KT
Sbjct: 196 -RKNEMYVESIQVFRD-LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ ++ T + +YSKCG + +F R+ +++ + AM G +G+ ++ L
Sbjct: 254 SHD--YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLV 336
+ G + + T SL H L+
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLI 338
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 226/411 (54%), Gaps = 24/411 (5%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF ++ + ++I R ++V +F +G+ + D +T L CAR+
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYR 411
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L G+++H + + F++ V+ L+ YA + + VF +M ++ +WN
Sbjct: 412 LLDE---GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 468
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I GY +K+C N + ++L++ P + T+ CVL + L + G +H
Sbjct: 469 IIGGY------SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 522
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+ + Y +D + +LVDMY+KCG L A ++F + K++++WT M G +HG
Sbjct: 523 GYIMRNGYF--SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EAI L + MR G++ + ++F SL AC H+GLV+EG F+ M+ + +EP ++HY+
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVD+L R G L +AY FI +PI PDA +W +LL C +H DV L EKV + + +L+PE
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
T +V ++NIYA AE+W V+ +RK++ + + PG S ++
Sbjct: 701 NTGY--------YVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 21/325 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR--FCSLSTLWLGRQIHV 133
L N L + S+ +F +S G+ D +T+ SC F SL ++ G Q+H
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTF-----SCVSKSFSSLRSVHGGEQLHG 219
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ K GF V +L+ FY N+ + S +KVFD+M R +WN++INGY S K
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
L +F MLV SG++ T+V V + + L+ G VH K + E D
Sbjct: 280 -----GLSVFVQMLV--SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE-D 331
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F T L+DMYSKCG LD+A +F M +++V+++T+M G A G EA++L + M +
Sbjct: 332 RFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK-SKWGVEPHIKHYSCIVDLLGRAGHL 372
G+ P+ T T++ C L++EG + + +K + G + + + ++D+ + G +
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSM 448
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSA 397
+EA + +K D I W +++
Sbjct: 449 QEAELVFSEMRVK-DIISWNTIIGG 472
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 12/229 (5%)
Query: 113 LGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
L S + C+ S +L G+++ + GF+ + + + L Y + D+ +VFD++
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+ + WN ++N + AK F+ + LF+ M+ SGV+ T CV S L
Sbjct: 157 IEKALFWNILMN------ELAKSGDFSGSIGLFKKMM--SSGVEMDSYTFSCVSKSFSSL 208
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
+ G +HG++ K+ + N V G +LV Y K +D+A +F M E++V++W +
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSV--GNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 266
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ G +G + + + M G++ + T S+FA C + L+ G
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 18/227 (7%)
Query: 207 LVDVSGVKPTDTTMVC-VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
L+ VSG D +C VL + + L+ G V ++ ++ +++ +G+ L MY+
Sbjct: 83 LLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSN--LGSKLSLMYT 140
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
CG L A +F ++ + L W + +A G + +I L M GV+ ++ TF+
Sbjct: 141 NCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSC 200
Query: 326 LFAA-----CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+ + H G E LH F +KS +G + + +V + ++ A +
Sbjct: 201 VSKSFSSLRSVHGG---EQLHGF-ILKSGFGERNSVGN--SLVAFYLKNQRVDSARK-VF 253
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
+ D I W S+++ +G L EK + +Q+ +D+A
Sbjct: 254 DEMTERDVISWNSIINGYVSNG---LAEKGLSVFVQMLVSGIEIDLA 297
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 160/527 (30%), Positives = 260/527 (49%), Gaps = 90/527 (17%)
Query: 12 LLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L L++ + +K+IHAQLI T +K + + ++ Y S ++ +VF +
Sbjct: 31 LSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAV---SARNIDYAFWVFVGIN 87
Query: 71 PPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+ + + T+IR P+ ++ + +G+ + FT++F L + S
Sbjct: 88 YPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGV-ELNKFTFLFVLKAYGLRPSYQE-- 144
Query: 127 LGRQIHVHVTKRGFMF-------------------------------NVLVATTLIHFYA 155
GR +H + K GF + NV+ T+I
Sbjct: 145 -GRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCF 203
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCS---------------------------- 187
D +++F +MP R+ +WNA++ GY
Sbjct: 204 GCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISA 263
Query: 188 --QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
Q+ +A + AL LF++M++ +GV + +LS +Q+G L+ G +H YM++
Sbjct: 264 YVQNGRAAE----ALELFKEMML--AGVSADSIIITSILSACAQIGALDMGRWIHAYMKR 317
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ NDVF+ TALVDMY+KCGC+D A +F+ M KN+ +W AM +G+AIHG G A+
Sbjct: 318 S--KLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAAL 375
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L M GV PN +TF ++ +AC H G VEEG F+ M ++ + P ++HY C+VD+
Sbjct: 376 ELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDI 435
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
L R G + EA I +P++P+ ++W +LL+AC VHG +GE V + +L E D
Sbjct: 436 LCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSE----D 491
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSSILQ 471
C +V LSNI+A+ +W +VE RK MK VE + PG S ++
Sbjct: 492 GGC----YVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIE 534
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/482 (32%), Positives = 262/482 (54%), Gaps = 46/482 (9%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
+ IKQ+HA+++ N L +S + A+LI+ TK P + +F + PN FL+N L
Sbjct: 60 TQIKQVHARILLNGLDQSCYVLAKLIRTL-TKLNIPVDPYPLS-IFNQVNYPNPFLYNAL 117
Query: 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH-V 135
IR ++S ++ +G++ FT+ +C + + LGRQIH +
Sbjct: 118 IRGYLIEERLKESTEFYSLMRKEGVVPV-SFTFTALFKACG---AKMDVGLGRQIHGQTI 173
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-SQSKKAKD 194
GF ++ V ++I Y + G+KVFD+MP R +W +I+ Y S + ++
Sbjct: 174 LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAG 233
Query: 195 CAFNALVLFRDML---VDVS---------------------GVKPTDTTMVCVLSVSSQL 230
F+ L + +DM+ V VS GV+ + T++ V+S +QL
Sbjct: 234 ELFDGLPV-KDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQL 292
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G ++ + EK+ + ++ V +G+AL+DMYSKCG + +A +F M+E+NV ++++
Sbjct: 293 GAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSS 352
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
M G A+HG+ ++A++L D M +KPN VTF + AC HAG+VE+G +F+ M+ +
Sbjct: 353 MILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCY 412
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G++P HY+C+VDLLGRAG L+EA+ + +PI+P +W +LL AC +H +
Sbjct: 413 GIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIA 472
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
L +L+P C +++ L+NIYAS RW DV +VRK M+ + + P S +
Sbjct: 473 ANHLFELEP-------YCIG-NYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWI 524
Query: 471 QT 472
++
Sbjct: 525 ES 526
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 224/414 (54%), Gaps = 44/414 (10%)
Query: 89 SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW-LGRQIHVHVTKRGFMFNVLVA 147
++ VF V+ G+ D+ ALG+C S + G+ IH V G + +V V+
Sbjct: 95 AIAVFGDMVADGVFP-DNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVS 153
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--------- 198
T LI Y + ++ ++VFD MP RS+ TWNAM++ Y K D A+
Sbjct: 154 TELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKV--DTAYEMFLAMPRRD 211
Query: 199 -------------------ALVLFRDMLVDVS-GVKPTDTTMVCVLSVSSQLGLLEFGAC 238
AL LFR M+ S V P TM +L + G LE G
Sbjct: 212 VVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIW 271
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAI 297
VH Y+E+ +D ++ L+DMY KCG +DNAL +F + R+K++ +WT + G+A+
Sbjct: 272 VHAYIERNRM--NDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAM 329
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG+ +A+R+ D M+D G+ P+ VT + AC H GLV+EGL F +M++K+ + P I+
Sbjct: 330 HGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIE 389
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C++DLLGR G L+EAY+ I +P+ P+ ++W + LSAC VHG++ LG+ + L +L
Sbjct: 390 HYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRL 449
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P+ + V LS++YA A+ W + R++M +V+ PG S ++
Sbjct: 450 DPDDPW--------GRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIE 495
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 129/312 (41%), Gaps = 51/312 (16%)
Query: 131 IHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH + K G + + T L+ YA+ +++FD+MP + AM + +
Sbjct: 31 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASG 90
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG----LLEFGACVHGYMEK 245
+ A+ A+ +F DM+ D GV P + + L G G +H +
Sbjct: 91 QAAQ-----AIAVFGDMVAD--GVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVT 143
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ +P DVF+ T L+ +Y + G L + +F M ++ +TW AM A HGK + A
Sbjct: 144 SGIVP--DVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 201
Query: 306 RLLDSM--RD--------------------------------CGVKPNAVTFTSLFAACC 331
+ +M RD C V PN T +++ AC
Sbjct: 202 EMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 261
Query: 332 HAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
AG +E G+ + + +++ + ++ C++D+ + G ++ A P K D
Sbjct: 262 GAGCLETGIWVHAYIERNRMNDDGYLDR--CLIDMYCKCGSIDNALQVFEKAPRKKDLFS 319
Query: 391 WRSLLSACNVHG 402
W +++ +HG
Sbjct: 320 WTTVICGLAMHG 331
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL L + + V G + +++ C+L + GLL GA ++P T
Sbjct: 10 ALRLIKSLSPAVHGAHLSASSIHCLLL---KAGLLHVGA----------HLP-------T 49
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+ Y+ G D+A +F M E+ ++ TAMA G+ +AI + M GV P
Sbjct: 50 ALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFP 109
Query: 319 NAVTFTSLFAACCHAG---LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+ V AC AG + + G+ P + + ++ + G +G L +
Sbjct: 110 DNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVS 169
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+P + I W ++L HG V
Sbjct: 170 RRVFDDMPSR-STITWNAMLHQYARHGKV 197
>gi|357464871|ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491765|gb|AES72968.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 554
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 241/451 (53%), Gaps = 31/451 (6%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF-DPPNLFLFNTLIR 82
+ ++HA LI P + L C+ P + + V PP+ F +NT+I+
Sbjct: 4 VYKLHATLIKTGQHQNPHSLRPFFLTCSN--YPAAARYAATVLLRLPTPPDPFSYNTIIK 61
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
P ++ +F++ + + + FD FT+ L S ++ K GF
Sbjct: 62 HVSPTGAISLFSH-MHRNSVPFDHFTFPLILKHHHHHLLHSLIF----------KLGFDT 110
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N+ V LI+ Y S + K+FD+M R +W+ +I+ + A+ AL +
Sbjct: 111 NIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAE-----ALSV 165
Query: 203 FRDMLVDVSGVKP--TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
F+ M + ++ M+ V+S S LG++E G VH ++ + + V +GTAL
Sbjct: 166 FQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMT--VPLGTAL 223
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
++MYS+CG +D ++ +F M E+NV+TWTA+ G+A+HG+ EA+++ M++ G+KP+
Sbjct: 224 INMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDG 283
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
F + AC H GLVE+G +F++M+ ++G++P ++HY C+VDLLGRAG + EA++F+
Sbjct: 284 ALFIGVLVACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVE 343
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P+KP++++WR+LL AC H + L EK + +++L P D+V LSN Y
Sbjct: 344 EMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDP--------YHDGDYVLLSNAY 395
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
W +R MK R+ EPG S +
Sbjct: 396 GRVGNWGGKAGLRNSMKQNRIVKEPGLSFVH 426
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 246/487 (50%), Gaps = 56/487 (11%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+K+IHA ++ +L + C T+ + +F PN FL+N +IR
Sbjct: 4 LKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGE---TEYANLLFKRVADPNAFLYNAMIRA 60
Query: 84 TPPQDSVLVFAYWVSKGLLTF---------DDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+ V + A V K +L D FT+ F + CA L LG+Q+H H
Sbjct: 61 YK-HNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCA---GLMCYNLGKQVHGH 116
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQSKKA 192
K G N ++ +L+ Y + +VF++M R + +WN +I+G+ Q ++A
Sbjct: 117 AFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRA 176
Query: 193 K------------------------DCAFNALVLFRDM-LVDVSGVKPTDTTMVCVLSVS 227
+ C AL FR M +VD+ + + ++V VL
Sbjct: 177 RAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDI---ELDEISLVSVLPAC 233
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+QLG LE G +H Y +K ++ D+ + AL+++Y+K G +D +F +M E++V++
Sbjct: 234 AQLGALELGKWIHIYADKAGFL--RDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVIS 291
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W+ M G+A HG+ EAI L M+ V+PN +TF L +AC HAGL+ EGL F++M+
Sbjct: 292 WSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESME 351
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+EP ++HY C+V+LLG +G L++A I +P+KPD+ +W L S+C HG++ +
Sbjct: 352 RDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIV 411
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
+ LL+L+P+ T +++ LSN+YA +W V +RK M K + PG
Sbjct: 412 AIAMEHLLELEPDDT--------GNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGC 463
Query: 468 SILQTTT 474
S ++
Sbjct: 464 SSIEVDN 470
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 163/478 (34%), Positives = 249/478 (52%), Gaps = 60/478 (12%)
Query: 27 IHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTP 85
+H +I +L S + LI Y S + + H VFT+ ++ +N +I
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFY----GSSGAPDLAHRVFTNMPGKDVVSWNAMINAFA 250
Query: 86 ----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
P ++L+F K + + T V L +CA+ L GR I ++ GF
Sbjct: 251 LGGLPDKALLLFQEMEMKDVKP-NVITMVSVLSACAKKIDLE---FGRWICSYIENNGFT 306
Query: 142 FNVLVATTLIHFYA---------------SNKDISS----------------GKKVFDQM 170
++++ ++ Y S KDI S +FD M
Sbjct: 307 EHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAM 366
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
P + +A WNA+I+ Y Q+ K + AL LF +M + KP + T++C L S+QL
Sbjct: 367 PHKWTAAWNALISAY-EQNGKPRV----ALSLFHEMQLS-KDAKPDEVTLICALCASAQL 420
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G ++FG +H Y++K + + + T+L+DMY+KCG L+ A+ +F + K+V W+A
Sbjct: 421 GAIDFGHWIHVYIKK--HDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSA 478
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
M +A++G+G A+ L SM + +KPNAVTFT++ AC HAGLV EG LF+ M+ +
Sbjct: 479 MIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLY 538
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G+ P I+HY C+VD+ GRAG LE+A +FI +PI P A +W +LL AC+ HG+V L E
Sbjct: 539 GIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELA 598
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+ LL+L+P C FV LSNIYA A W V ++RK M+ V+ EP S
Sbjct: 599 YQNLLELEP--------CNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCS 648
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 194/337 (57%), Gaps = 22/337 (6%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKK-----VFDQMPMRSSATWNAMINGYCSQSKKAKD 194
F V V ++ + N + GK+ +F +MP R +WN+M+ Y K +
Sbjct: 139 FCNEVGVDKGVLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE- 197
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
AL LF M GVKPT+ T+V +LS + LG L+ G +H Y+ E +
Sbjct: 198 ----ALALFDQM--RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRI--EVNS 249
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+GTALVDMY+KCG + A +F+ M K+VL W + GMAIHG EA RL M++
Sbjct: 250 IVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEA 309
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
GV+PN +TF ++ +AC HAG+V+EG L D M S +G+EP ++HY C++DLL RAG LEE
Sbjct: 310 GVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEE 369
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I +P++P+ +LL C +HG+ LGE VGK L+ LQP C S ++
Sbjct: 370 AMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQP--------CHSGRYI 421
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA+A++W D VR MKV + PG S+++
Sbjct: 422 LLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIE 458
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 13/219 (5%)
Query: 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
+C P +++ +F + G+ + T V L +CA +L G +H ++
Sbjct: 191 QCGKPNEALALFDQMRAVGVKP-TEATVVSLLSACAHLGALDK---GLHLHTYINDNRIE 246
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
N +V T L+ YA IS +VF+ M + WN +I G + A
Sbjct: 247 VNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKE-----AQR 301
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LF++M +GV+P D T V +LS S G+++ G + M ++ + E V ++
Sbjct: 302 LFKEM--KEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGI-EPKVEHYGCVI 358
Query: 262 DMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHG 299
D+ ++ G L+ A+ + M E N A+ G IHG
Sbjct: 359 DLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHG 397
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 243/470 (51%), Gaps = 67/470 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L + SH+KQIHAQ++ + +H PN
Sbjct: 21 LNQSNSISHVKQIHAQIL---------------------------RTIH-------TPNS 46
Query: 75 FLFNTLIRCTPP-----QDSVLVFAYWVSK--GLLTFDDFTYVFALGSCARFCSLSTLWL 127
F +N LI+ Q ++L++ +++ L D TY F L +CA L +L+
Sbjct: 47 FTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKACAY---LFSLFE 103
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSATWNAMINGYC 186
G+Q+H HV K GF + + +LIHFYAS + + +KVFD+M R+ +WN MI+ Y
Sbjct: 104 GKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYA 163
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
K D L++F +M+ +P TM V+ LG L G VH ++ K
Sbjct: 164 ----KVGDYDI-VLIMFCEMM---KVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKK 215
Query: 247 FYMPEN---DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+N DV + T LVDMY KCG L+ A +F M ++V +W ++ G A+HGK
Sbjct: 216 --CDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKA 273
Query: 304 AIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
A+ M + PN++TF + +AC H+G+V+EGL F+ M ++ VEP + HY C+
Sbjct: 274 ALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCL 333
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC-NVHGDVALGEKVGKILLQLQPEV 421
VDL RAGH++EA N + +PIKPDA++WRSLL AC H V L E++ K + + V
Sbjct: 334 VDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSV 393
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
C +V LS +YASA RW DV +RK M K V +PG S+++
Sbjct: 394 ------CGGA-YVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIE 436
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 255/497 (51%), Gaps = 58/497 (11%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S IKQ+HA +I N L + + +LI++ TK P + + VF + PN FL+ +
Sbjct: 56 SQIKQVHAHIIRNGLSQCSYVLTKLIRML-TKVDVPMGSYPL-LVFGQVNYPNPFLWTAM 113
Query: 81 IRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV- 135
IR Q +S + G+ FT+ +C ++ LG+Q+H
Sbjct: 114 IRGYALQGLLSESTNFYTRMRRDGVGPV-SFTFSALFKACGAALNMD---LGKQVHAQTI 169
Query: 136 -------------------TKRGFM------------FNVLVATTLIHFYASNKDISSGK 164
K GF+ +V+ T LI YA D+ S
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD +P++ W AM+ GY +Q+ + K+ AL F+ M DV G++ + T+ V+
Sbjct: 230 GLFDDLPLKDMVAWTAMVTGY-AQNGRPKE----ALEYFQKM-QDV-GMETDEVTLAGVI 282
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG ++ + E++ + P +V +G+AL+DMYSKCG D A +F M+E+N
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V ++++M G A+HG+ + A++L M ++PN VTF + +AC HAGLVE+G LF
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ +GV P HY+C+VDLLGRAG LEEA + + +P++P+ +W +LL AC +HG+
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNP 462
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ + L +L+P +++ LSNIYASA RW +V +RK ++ K +
Sbjct: 463 DIAQIAANELFKLEPNGI--------GNYILLSNIYASAGRWEEVSKLRKVIREKGFKKN 514
Query: 465 PGSSILQTTTHYTLDGF 481
PG S + D F
Sbjct: 515 PGCSWFEGKNGEIHDFF 531
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 210/367 (57%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FTY L +C+ +L++ G +IH + K G + V LI Y I K
Sbjct: 478 DQFTYGSVLKACSSQQALNS---GMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAK 534
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ D++ ++ +WNA+I G+ + K ++D A F +ML VKP + T VL
Sbjct: 535 KIHDRIEQQTMVSWNAIIAGF-TLLKHSED----AHSFFYEMLK--MSVKPDNFTYAIVL 587
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L + G +HG + K +DV+I + LVDMYSKCG + ++ L+F + K+
Sbjct: 588 DACANLASVGLGKQIHGQIIKLEL--HSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKD 645
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW AM G A HG G EA+ + M+ V+PN TF S+ AC H G +++GLH F+
Sbjct: 646 FVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFN 705
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M +++G+EP I+HYSC++D++GR+G + EA I +P + DA++WR+LLS C +HG++
Sbjct: 706 AMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNI 765
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ EK +LQL+PE + AC + LSNIYA A W V +RK M+ +++ E
Sbjct: 766 EIAEKATNAILQLEPEDS---SAC-----ILLSNIYADAGMWGKVSEMRKMMRYNKLKKE 817
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 818 PGCSWIE 824
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 164/333 (49%), Gaps = 19/333 (5%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
FD T+ L +C+ L LG Q+H + + GF +V+ + L+ YA K +
Sbjct: 174 FDQTTFAVVLKACS---VLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDS 230
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
K+F ++P+++ W+A+I G C Q+ D L LF++M G+ + + V
Sbjct: 231 LKIFSEIPVKNWVCWSAIIAG-CVQN----DEHILGLELFKEM--QKVGIGVSQSIYASV 283
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+ L L+ G +H + K + +D+ +GTA +DMY+KCG L +A IF+ + +
Sbjct: 284 FRSCAGLSALKVGTQLHAHALKCDF--GSDITVGTATLDMYAKCGSLADAQRIFNSLPKH 341
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++ + A+ G + KG EA++ + G+ N ++ + F+AC +G L
Sbjct: 342 SLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLH 401
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG- 402
++ K + +I + I+D+ G+ L EA + + DA+ W ++++A +G
Sbjct: 402 -SLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGN 459
Query: 403 -DVALGEKVGKILLQLQP-EVTFVDV--ACTSE 431
+ L + L+++P + T+ V AC+S+
Sbjct: 460 EEETLNLFASMLRLRMEPDQFTYGSVLKACSSQ 492
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 159/362 (43%), Gaps = 61/362 (16%)
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
Y SCA LS L +G Q+H H K F ++ V T + YA ++ +++F+
Sbjct: 280 YASVFRSCA---GLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFN 336
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+P S +NA+I G C +++K F AL F+ +L SG+ + ++ S +
Sbjct: 337 SLPKHSLQCYNAIIVG-CVRNEKG----FEALQFFQLLLK--SGLGFNEISLSGAFSACA 389
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+ G +H K+ +++ + +++DMY KC L A +F M ++ ++W
Sbjct: 390 SIKGDLDGRQLHSLSVKS--TLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSW 447
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC------------------ 330
A+ +G E + L SM ++P+ T+ S+ AC
Sbjct: 448 NAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK 507
Query: 331 -----------------CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
C G++EE + D ++ + V ++ I+ H E
Sbjct: 508 SGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVS-----WNAIIAGFTLLKHSE 562
Query: 374 EAYNF---IMGIPIKPDAILWRSLLSACNVHGDVALGEKV-GKIL-LQLQPEV----TFV 424
+A++F ++ + +KPD + +L AC V LG+++ G+I+ L+L +V T V
Sbjct: 563 DAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLV 622
Query: 425 DV 426
D+
Sbjct: 623 DM 624
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 35/303 (11%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ + C+ + SL G+Q H + GF+ +V ++ L+ Y ++ KVF
Sbjct: 45 TFSHIIQECSDYNSLKP---GKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVF 101
Query: 168 DQMPMRSSATWNAMINGYCSQSKKA------KDCAFNALVLFRDML------------VD 209
++M R ++N MI+GY + D +V + ML +D
Sbjct: 102 EKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSID 161
Query: 210 V-------SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-FYMPENDVFIGTALV 261
V V TT VL S L G VHG + + FY DV G+AL+
Sbjct: 162 VFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFY---KDVVTGSALL 218
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KC LD++L IFS + KN + W+A+ G + + + L M+ G+ +
Sbjct: 219 DMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278
Query: 322 TFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+ S+F +C ++ G L + +K +G + + + +D+ + G L +A
Sbjct: 279 IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVG--TATLDMYAKCGSLADAQRIFN 336
Query: 381 GIP 383
+P
Sbjct: 337 SLP 339
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 123/279 (44%), Gaps = 20/279 (7%)
Query: 26 QIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI--- 81
+IH ++I + L LI +YC K + K +H + + +N +I
Sbjct: 500 EIHNRIIKSGLGLDSFVGGALIDMYC-KCGMIEEAKKIH---DRIEQQTMVSWNAIIAGF 555
Query: 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
+ F Y + K + D+FTY L +CA +L+++ LG+QIH + K
Sbjct: 556 TLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACA---NLASVGLGKQIHGQIIKLELH 612
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+V + +TL+ Y+ ++ VF++ P + TWNAMI GY + AL
Sbjct: 613 SDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEE-----ALG 667
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
F M ++ V+P T V +L + +G ++ G M T Y E + + ++
Sbjct: 668 YFERMQLE--NVRPNHATFVSILRACAHMGFIDKGLHYFNAM-LTEYGLEPQIEHYSCMI 724
Query: 262 DMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHG 299
D+ + G + AL + M E + + W + + IHG
Sbjct: 725 DIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHG 763
>gi|297820424|ref|XP_002878095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323933|gb|EFH54354.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 651
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 249/463 (53%), Gaps = 28/463 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP-P 72
L+ + + +++IH+ +I N L P ++ L++ +C + S +F FD P
Sbjct: 12 LQGCNSMNKLRKIHSHVIINGLHHHPSIFNHLLR-FCAVSVNG-SLSYAQLLFDRFDSDP 69
Query: 73 NLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF----DDFTYVFALGSCARFCSLSTLWLG 128
+ +N LIR S L + ++ LL+ D FT+ FAL +C R +
Sbjct: 70 STSAWNYLIRGFSISSSPLYTILYYNRMLLSSVSRPDIFTFSFALKACERIRLIPKCL-- 127
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
++H V + GF+ + +V+T L+ Y++N + KVFD+MP+R +WNAMI+ C
Sbjct: 128 -ELHGSVIRSGFLADAIVSTNLVRCYSANGSVEIASKVFDEMPVRDLVSWNAMIS--CFS 184
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
AF+ ++ M + GV T+V +LS + + L G +H
Sbjct: 185 HAGLHHQAFS---MYSRMANE--GVCVDAYTIVALLSSCAHVSALNMGVMLHRI--ACDI 237
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E+ VF+ AL+DMY+KCG L+NA+ +F MR+++VLTW +M G +HG G EAI
Sbjct: 238 RCESSVFVCNALIDMYAKCGSLENAVGVFKGMRKRDVLTWNSMIIGYGVHGHGVEAISFF 297
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M GV+PNAVTF L C H GLV+EG+ F+ M S++ + P++KHY C+VDL GR
Sbjct: 298 RKMVASGVRPNAVTFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLFGR 357
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG LE+A I D +LWR+LL +C +H ++ LGE K L+QL+ A
Sbjct: 358 AGQLEKALEMIHTSSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE--------AF 409
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ D+V +++IY++A S+RK ++ + T PG S ++
Sbjct: 410 NAGDYVLMTSIYSAANDAQGFASMRKLIRSHDLRTIPGWSWIE 452
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 216/394 (54%), Gaps = 41/394 (10%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T+ F +CA F SL G+ IH H K GF F+V T L+ YA + +
Sbjct: 9 NELTFTFLFPACASFYSLLH---GKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLAR 65
Query: 165 KVFDQMPMRSSATWNAMINGYCSQ-------------------------SKKAKDCAF-N 198
+VFD+M +R TWN++I GY S +++ +
Sbjct: 66 QVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTK 125
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL +F M D V+P + T+ V S ++LG LE G + Y M ++++
Sbjct: 126 ALEMFLKMEKDKE-VRPNEVTIASVFSACAKLGALEVGERIESYARDNGLM--KNLYVSN 182
Query: 259 ALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
L++MY++CG +D A +F+ + + +N+ +W +M G+A+HG+ NEA++L D M G++
Sbjct: 183 TLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIE 242
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ VTF L AC H GLV +G LF +M++ + + P ++HY C+VDLLGRAG L+EAY+
Sbjct: 243 PDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYD 302
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
+ +P+KPD+++W +LL AC+ H +V E + L Q++P ++V L
Sbjct: 303 LVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEP--------WNPGNYVILC 354
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYASA+RW V +RK MK ++ G S+++
Sbjct: 355 NIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIE 388
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 220/414 (53%), Gaps = 23/414 (5%)
Query: 61 IVHFVFTHFDP--PNLFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGS 115
+ H + THF P F +N +IR ++ L +S+ ++ D +T L +
Sbjct: 79 LAHIIRTHFLELYPAPFQWNNIIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIPIVLKA 138
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C GRQ+H + G N + I Y+ + + KVF+Q R
Sbjct: 139 ---VCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKVFEQNRFRKL 195
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNA+I G SQ +AK+ A+ +F +M G +P + TMV V S LG L+
Sbjct: 196 GSWNAIIGG-LSQGGRAKE----AVTMFMEM--RKCGFEPDEVTMVSVTSACGSLGHLDL 248
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+H + + +D +LVDMY KCG +D A +FSRM E NV +WT+M G
Sbjct: 249 ALQLHKCVYQAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGY 308
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A+HG+ +A+ MR+ GV+PN VTF + +AC H G V+EG + FD M + +G+ P
Sbjct: 309 AMHGQLYDALECFRCMREAGVRPNHVTFIGVLSACVHGGAVQEGKYYFDMMTTAYGLVPR 368
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
++HY C+VDLLGRAG LEEA + +P+K + I+W L+ AC +G+V +GE V + LL
Sbjct: 369 MQHYGCMVDLLGRAGLLEEARKMVERMPMKANVIVWGCLMGACEKYGNVKMGEWVAEHLL 428
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+L+P V FV LSNIYAS W +VE VR MK ++++ P S+
Sbjct: 429 ELEPWNDGV--------FVVLSNIYASRGLWREVERVRGVMKERKLDKVPAYSL 474
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 214/387 (55%), Gaps = 23/387 (5%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P ++ F+ ++KG + DD T + AL +CAR C + +G+ H + GF N
Sbjct: 177 PNKALQAFS-QMAKGQVMLDDVTLLNALVACARTCMMK---VGKLCHALLVTNGFEINCY 232
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
+ ++LI YA + +++FD MP R++ W +MI+GY +Q ++K+ A+ LFRD
Sbjct: 233 MGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGY-TQLGQSKE----AIKLFRD 287
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M ++GVK D T+ V+S Q+G L+ G VH Y + + D+ + +L+DMYS
Sbjct: 288 M--QIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCD--IHGLGKDISVKNSLIDMYS 343
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFT 324
KCG + A IF M +++ +WT + G A +G EA+ L M + GV PN +TF
Sbjct: 344 KCGDIKKAYDIFCGMVKRDNFSWTVI-MGFAANGLSGEALDLFAQMEEEGGVMPNEITFL 402
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ +C H GLVE+G F M S +G+ P I+HY C+VDLLGRA L EA FI +PI
Sbjct: 403 GVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPI 462
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
PDA++WRSLL AC G+V L E V + + L+P D V LS +YA+
Sbjct: 463 APDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGD--------VLLSTVYATTS 514
Query: 445 RWPDVESVRKQMKVKRVETEPGSSILQ 471
RW D VR + R +PG S ++
Sbjct: 515 RWVDANKVRTGIYSGRKTKQPGCSFIE 541
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 181/367 (49%), Gaps = 41/367 (11%)
Query: 100 GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
G + D+++ AL + AR + ++ +G Q+H K G + V TLI+ Y+S
Sbjct: 87 GYMPIDNYSLSAALSTAAR---MPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSY 143
Query: 160 ISSGKKVFDQMPMRSSAT--WNAMINGYCSQSKKAKDC-AFNALVLFRDMLVDVSGVKPT 216
S+ + V D P +S T WN +I GY K AF+ + + ML DV
Sbjct: 144 PSTARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDV------ 197
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T++ L ++ +++ G H + + E + ++G++L+ MY+KCG +++A I
Sbjct: 198 --TLLNALVACARTCMMKVGKLCHALLVTNGF--EINCYMGSSLISMYAKCGQVEDARRI 253
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F M ++N + WT+M +G G+ EAI+L M+ GVK + T +++ ++C G +
Sbjct: 254 FDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGAL 313
Query: 337 EEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
+ G +H + ++ G+ I + ++D+ + G +++AY+ G+ +K D W +
Sbjct: 314 DLGRYVHAYCDIH---GLGKDISVKNSLIDMYSKCGDIKKAYDIFCGM-VKRDNFSWTVI 369
Query: 395 L--SACNVHGDV----ALGEKVGKILLQLQPEVTFVDV--ACTSEDFVA--------LSN 438
+ +A + G+ A E+ G ++ E+TF+ V +C+ V +S+
Sbjct: 370 MGFAANGLSGEALDLFAQMEEEGGVMPN---EITFLGVLTSCSHGGLVEQGYRHFHRMSS 426
Query: 439 IYASAER 445
IY A R
Sbjct: 427 IYGIAPR 433
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 216/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T+V L + F L+ + GR IH V K GF +++ +L+ YA ++
Sbjct: 421 DSVTFVLLL---SIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLL 477
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVF M +WN +I + S DC + +M + G+ P + T++ +L
Sbjct: 478 KVFSYMSAHDIISWNTVI----ASSVHFDDCTV-GFQMINEMRTE--GLMPDEATVLGIL 530
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ S L + G +HGY+ K+ + E++V IG AL++MYSKCG L+N + +F M+EK+
Sbjct: 531 PMCSLLAVRRQGKEIHGYIFKSGF--ESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKD 588
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V+TWTA+ + ++G+G +A++ M GV P++V F + AC H+G+V+EGL FD
Sbjct: 589 VVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFD 648
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MK+ + +EP ++HY+C+VDLL R+G L +A FI+ +P+KPDA LW +LLSAC G+
Sbjct: 649 RMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNT 708
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ ++V K +L+L + T +V +SNIYA+ +W V++VR MK K ++ E
Sbjct: 709 NIAQRVSKKILELNSDDTGY--------YVLVSNIYATLGKWDQVKTVRNSMKTKGLKKE 760
Query: 465 PGSSILQ 471
PGSS ++
Sbjct: 761 PGSSWIE 767
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 119/422 (28%), Positives = 197/422 (46%), Gaps = 27/422 (6%)
Query: 11 ALLK-LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTH 68
+LLK L + ++ +H+ +IT+ L +++ +LI Y K S VF
Sbjct: 24 SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVS----VFRS 79
Query: 69 FDPPN-LFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
P N ++L+N++IR L + + + L D FT+ + SCAR L
Sbjct: 80 ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLE- 138
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
LG +H H + GF ++ + LI Y+ D+ + + VF++M R S +WN++I+G
Sbjct: 139 --LGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
YCS + A + FR ++G+ P TM VL L ++ G VHG +E
Sbjct: 197 YCSNG--FWEDALDMYHKFR-----MTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIE 249
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
K DV IG L+ MY K L A +FS+M K+ +TW M G A G+ +
Sbjct: 250 KIGI--AGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEAS 307
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
++L M D G P+ ++ TS AC +G ++ G + + G E + ++D
Sbjct: 308 VKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNILID 365
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL-LQLQPE-VT 422
+ + G L A K D++ W SL++ G G + K++ ++ +P+ VT
Sbjct: 366 MYAKCGDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVT 424
Query: 423 FV 424
FV
Sbjct: 425 FV 426
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 146/295 (49%), Gaps = 13/295 (4%)
Query: 110 VFALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
+ ++ S R C S L +G+ +H ++ GF + + LI YA D+ + ++VFD
Sbjct: 322 MLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFD 381
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ S TWN++INGY +QS K+ L F+ M ++ KP T V +LS+ S
Sbjct: 382 TTKCKDSVTWNSLINGY-TQSGYYKE----GLESFKMMKMER---KPDSVTFVLLLSIFS 433
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
QL + G +H + K + E ++ IG +L+D+Y+KCG +D+ L +FS M ++++W
Sbjct: 434 QLADINQGRGIHCDVIKFGF--EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISW 491
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+ ++++ MR G+ P+ T + C + +G + +
Sbjct: 492 NTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYI-F 550
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
K G E ++ + ++++ + G LE + K D + W +L+SA ++G+
Sbjct: 551 KSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK-DVVTWTALISAFGMYGE 604
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 244/458 (53%), Gaps = 40/458 (8%)
Query: 25 KQIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+++HA +I + PP+Y +LI LY + + + V N+ + +I
Sbjct: 30 QRVHAHMIKTCYE-PPVYLRTRLIVLYNKCRCLGDARR----VLDEMPERNVVSWTAMIS 84
Query: 83 CTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ +++ +F + G ++FT+ L SC S S LGRQIH V K
Sbjct: 85 GYSQRGYASEALHLFVEMLMSGTAP-NEFTFATVLTSCT---SSSGFQLGRQIHSLVIKT 140
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
F ++ V ++L+ YA I ++VFD +P R + A+I+GY +
Sbjct: 141 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE----- 195
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT---FYMPENDVF 255
AL LFR + + G++ T VL+ S L L+ G VH ++ + FY V
Sbjct: 196 ALDLFRRLQRE--GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY-----VV 248
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ +L+DMYSKCG L + IF M E+ V++W AM G + HG G EA+ L M++
Sbjct: 249 LQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEEN 308
Query: 316 -VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLE 373
VKP++VTF ++ + C H G+ + GL +F M K G EP I+HY C+VDL GRAG +E
Sbjct: 309 KVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVE 368
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA+ FI +P +P A +W SLL AC VH +V +GE V + LL+++ E + ++
Sbjct: 369 EAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESE--------NAGNY 420
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSN+YASA RW DV +VR+ MK K V EPG S ++
Sbjct: 421 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 458
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 146/283 (51%), Gaps = 13/283 (4%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S + + G+++H H+ K + V + T LI Y + + ++V D+MP R+ +W A
Sbjct: 22 SQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTA 81
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+GY + A AL LF +ML +SG P + T VL+ + + G +H
Sbjct: 82 MISGYSQ-----RGYASEALHLFVEML--MSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ KT + E+ +F+G++L+DMY+K G + A +F + E++V++ TA+ +G A G
Sbjct: 135 SLVIKTSF--ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHY 359
EA+ L ++ G++ N VT+ S+ A ++ G + + +++K + ++
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK--LPFYVVLQ 250
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ ++D+ + G L + +P + I W ++L + HG
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERT-VISWNAMLVGYSKHG 292
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 8/214 (3%)
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
SQ + E G VH +M KT Y P V++ T L+ +Y+KC CL +A + M E+NV++
Sbjct: 22 SQTAIRE-GQRVHAHMIKTCYEP--PVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVS 78
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WTAM +G + G +EA+ L M G PN TF ++ +C + + G + ++
Sbjct: 79 WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH-SLV 137
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
K E HI S ++D+ +AG + EA G+P + D + +++S + + L
Sbjct: 138 IKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER-DVVSCTAIISG---YAQLGLD 193
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
E+ + +LQ E + + ALS + A
Sbjct: 194 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 227
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 20/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
B+ T L CA+ L L +G +I + N++V+T ++ Y + G+
Sbjct: 5 BEITLATVLSICAK---LGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGR 61
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD M R W+AMI GY + + AL LF M + +KP D T+V VL
Sbjct: 62 LVFDHMARRDVVXWSAMIAGYAQNGRSNE-----ALELFEXM--KSAQIKPNDVTLVSVL 114
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG +E G + Y+E + ++V++ +AL+ MYSKCG + A IF ++ +++
Sbjct: 115 SACAQLGSVETGERIGSYVESRGLI--SNVYVASALLGMYSKCGNIIKARQIFDKLPQRD 172
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW +M G+AI+G +AI L + M++ VKPN +TF L AC HAG VE GL F
Sbjct: 173 NVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFR 232
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+S + P+I+H++CIVDL R+G L +AY FI + ++P+ ++W +LLSA +H +V
Sbjct: 233 SMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNV 292
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E GK LL+L+P+ S ++V LSNIYASA RW + VRK MK KRV+
Sbjct: 293 ELAELAGKKLLELEPD--------NSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKA 344
Query: 465 PGSSILQT 472
S ++
Sbjct: 345 AAYSWVEV 352
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 127/230 (55%), Gaps = 13/230 (5%)
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+P + T+ VLS+ ++LG LE G + + +++ + TA+++MY KCG +D+
Sbjct: 3 EPBEITLATVLSICAKLGDLEMGLRIKKLXDNKNL--GSNMIVSTAMLEMYVKCGAVDDG 60
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
L+F M ++V+ W+AM G A +G+ NEA+ L + M+ +KPN VT S+ +AC
Sbjct: 61 RLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQL 120
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
G VE G + ++S+ G+ ++ S ++ + + G++ +A +P + D + W S
Sbjct: 121 GSVETGERIGSYVESR-GLISNVYVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNS 178
Query: 394 LLSACNVHG----DVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVAL 436
++ ++G +AL ++ +I +++P +TFV + ACT V L
Sbjct: 179 MIMGLAINGFAEDAIALYNRMKEI--EVKPNNITFVGLLTACTHAGHVEL 226
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 223/425 (52%), Gaps = 81/425 (19%)
Query: 111 FALGSCARFCSL-STLWLGRQIHVHVTKRGFMFNVLVATTLIHFY--------------- 154
F S + CSL S L G +H H+ K GF +V V T L+ FY
Sbjct: 11 FTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFDE 70
Query: 155 ----------------ASNKDISSGKKVFDQMPMRSSATWNAMINGYC------------ 186
A D+SS +++FD+MP+R++A+WNAMI+GY
Sbjct: 71 MSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLF 130
Query: 187 ------------------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
SQ+K+ ++ AL +F +M +G+ P + TM ++S +
Sbjct: 131 SQMPNRDIISWTTMIACYSQNKQFRE----ALAVFNEM--QTNGIDPDEVTMATIISACA 184
Query: 229 QLGLLEFGACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LG L+ G +H Y ME F + DV+IG+AL+DMY+KCG LD +L++F ++R+KN+
Sbjct: 185 HLGALDLGKEIHLYAMEMGFDL---DVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFC 241
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W ++ G+A+HG EA+ + M+ +KPN VTF S+ AC HAGLVEEG F +M
Sbjct: 242 WNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMS 301
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+ + P I+HY C+VDLLG+AG LE+A + + ++P++++W +LL C +H ++ +
Sbjct: 302 RDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIA 361
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE-TEPG 466
+ L+P S + L N+YA RW +V ++R MK VE T PG
Sbjct: 362 QVAVNESKVLEPN--------NSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPG 413
Query: 467 SSILQ 471
SS ++
Sbjct: 414 SSWIE 418
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 14/201 (6%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V PT T ++ S + L FG VHG++ K Y ++ VF+ TALVD Y G +
Sbjct: 6 VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWK--YGFDSHVFVQTALVDFYGNAGKIVE 63
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F M E++V WT M + A G + A +L D M N ++ ++
Sbjct: 64 ARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMP----VRNTASWNAMIDGYSR 119
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAI 389
VE LF M ++ I ++ ++ + EA +N + I PD +
Sbjct: 120 LRNVESAELLFSQMPNR-----DIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEV 174
Query: 390 LWRSLLSACNVHGDVALGEKV 410
+++SAC G + LG+++
Sbjct: 175 TMATIISACAHLGALDLGKEI 195
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/414 (34%), Positives = 224/414 (54%), Gaps = 44/414 (10%)
Query: 89 SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW-LGRQIHVHVTKRGFMFNVLVA 147
++ VF V+ G+ D+ ALG+C S + G+ IH V G + +V V+
Sbjct: 95 AIAVFGDMVADGVFP-DNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVS 153
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--------- 198
T LI Y + ++ ++VFD MP RS+ TWNAM++ Y K D A+
Sbjct: 154 TELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKV--DTAYEMFLAMPRRD 211
Query: 199 -------------------ALVLFRDMLVDVS-GVKPTDTTMVCVLSVSSQLGLLEFGAC 238
AL LFR M+ S V P TM +L + G LE G
Sbjct: 212 VVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIW 271
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAI 297
VH Y+E+ +D ++ L+DMY KCG +DNAL +F + R+K++ +WT + G+A+
Sbjct: 272 VHAYIERNRM--NDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVICGLAM 329
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG+ +A+R+ D M+D G+ P+ VT + AC H GLV+EGL F +M++K+ + P I+
Sbjct: 330 HGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIE 389
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C++DLLGR G L+EAY+ I +P+ P+ ++W + LSAC VHG++ LG+ + L +L
Sbjct: 390 HYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRL 449
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P+ + V LS++YA A+ W + R++M +V+ PG S ++
Sbjct: 450 DPDDPW--------GRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIE 495
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 129/312 (41%), Gaps = 51/312 (16%)
Query: 131 IHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH + K G + + T L+ YA+ +++FD+MP + AM + +
Sbjct: 31 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASG 90
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG----LLEFGACVHGYMEK 245
+ A+ A+ +F DM+ D GV P + + L G G +H +
Sbjct: 91 QAAQ-----AIAVFGDMVAD--GVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVT 143
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ +P DVF+ T L+ +Y + G L + +F M ++ +TW AM A HGK + A
Sbjct: 144 SGIVP--DVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 201
Query: 306 RLLDSM--RD--------------------------------CGVKPNAVTFTSLFAACC 331
+ +M RD C V PN T +++ AC
Sbjct: 202 EMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 261
Query: 332 HAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
AG +E G+ + + +++ + ++ C++D+ + G ++ A P K D
Sbjct: 262 GAGCLETGIWVHAYIERNRMNDDGYLDR--CLIDMYCKCGSIDNALQVFEKAPRKKDLFS 319
Query: 391 WRSLLSACNVHG 402
W +++ +HG
Sbjct: 320 WTTVICGLAMHG 331
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL L + + V G + +++ C+L + GLL GA ++P T
Sbjct: 10 ALRLIKSLSPAVHGAHLSASSIHCLLL---KAGLLHVGA----------HLP-------T 49
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+ Y+ G D+A +F M E+ ++ TAMA G+ +AI + M GV P
Sbjct: 50 ALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFP 109
Query: 319 NAVTFTSLFAACCHAG---LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+ V AC AG + + G+ P + + ++ + G +G L +
Sbjct: 110 DNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVS 169
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+P + I W ++L HG V
Sbjct: 170 RRVFDDMPSR-STITWNAMLHQYARHGKV 197
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 158/514 (30%), Positives = 259/514 (50%), Gaps = 84/514 (16%)
Query: 24 IKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQIHA ++ N L S + +LI Y + P + K H +F P++ + N ++R
Sbjct: 28 LKQIHASMVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFDEIPKPDVSICNHVLR 85
Query: 83 CT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P+ +V ++ +G+ + D +T+ F L +C++ S G H V +
Sbjct: 86 GSAQSMKPEKTVSLYTEMEKRGV-SPDRYTFTFVLKACSKLEWRSN---GFAFHGKVVRH 141
Query: 139 GFMFNVLVATTLIHF-------------------------------YASNKDISSGKKVF 167
GF+ N V LI F YA I ++F
Sbjct: 142 GFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLF 201
Query: 168 DQMPMRSSATWNAMING--YCSQSKKAKD----------------------CAF--NALV 201
D+MP + WN MI G C + A++ C + AL
Sbjct: 202 DEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALG 261
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT--- 258
+F++M +G P T++ +LS + LG LE G +H Y+ +T + + +++GT
Sbjct: 262 IFKEM--RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS-IYVGTPIW 318
Query: 259 -ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
AL+DMY+KCG +D A+ +F ++++++ TW + G+A+H +I + + M+ V
Sbjct: 319 NALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVW 377
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN VTF + AC H+G V+EG F M+ + +EP+IKHY C+VD+LGRAG LEEA+
Sbjct: 378 PNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFM 437
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
F+ + I+P+AI+WR+LL AC ++G+V LG+ + LL ++ + S D+V LS
Sbjct: 438 FVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--------ESGDYVLLS 489
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYAS +W V+ VRK RV+ G S+++
Sbjct: 490 NIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/436 (35%), Positives = 239/436 (54%), Gaps = 53/436 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF D +L +N+LI C Q VL + + +T D T V + +C+ C
Sbjct: 214 VFDKMDDRDLVSWNSLI-CGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLC 272
Query: 121 -------------------------SLSTLWLGRQIHVHVTKRGF----MFNVLVATTLI 151
SL ++ GR+ V + +R F N++ ++
Sbjct: 273 EDGVVDSMVKYIEDKHVDIDVYLGNSLIDMY-GRRGLVDLARRVFDRMQEKNIVSWNAML 331
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
YA+ D+ + KK+F++MP+R+ +W MI+G C+Q+ + D AL LF++M+ +
Sbjct: 332 TGYATAGDLVAAKKLFNEMPIRNVISWTCMISG-CAQANQCSD----ALKLFQEMMD--A 384
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
VKP + T+ VLS S LGLL+ G VH YM + + ++DV++G AL+DMY KCG +D
Sbjct: 385 NVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCR--HDIKSDVYVGNALIDMYCKCGVVD 442
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
AL +F M++K+ ++WT+M G+A++G + L M G++P +F + AC
Sbjct: 443 KALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACT 502
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
HAGLV++GL F++M+ +G+ P +KHY C+VDLL R+G L+ AY FI +P+ PD +LW
Sbjct: 503 HAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLW 562
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
R LLSAC +H ++ L E LL+L P S ++V LSN YA ++RW D
Sbjct: 563 RILLSACKLHRNLVLAEIATSKLLELDPS--------NSGNYVLLSNTYAGSDRWDDASR 614
Query: 452 VRKQMKVKRVETEPGS 467
+R M V V+ +P S
Sbjct: 615 MRDLMVVGDVQ-KPSS 629
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 199/420 (47%), Gaps = 63/420 (15%)
Query: 24 IKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
IK+ HA LI T+ K+P + +I+ Y ++ +F F P L +FN LIR
Sbjct: 73 IKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKA---NFAFIQIGQPTLLIFNYLIR 129
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
P +++++++ + + D+ T+++ +C+R + + G+ HV V K
Sbjct: 130 GLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSR---VKDVLHGQVFHVQVLKL 186
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF + + +LI Y ++ +KVFD+M R +WN++I GY SQ + K+
Sbjct: 187 GFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGY-SQCNRFKE---- 241
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN-----D 253
L LF L+ + V TMV V+ S L C G ++ E+ D
Sbjct: 242 VLDLFN--LMREANVTADSVTMVKVILACSYL-------CEDGVVDSMVKYIEDKHVDID 292
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKN----------------------------- 284
V++G +L+DMY + G +D A +F RM+EKN
Sbjct: 293 VYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPI 352
Query: 285 --VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
V++WT M +G A + ++A++L M D VKP+ +T +S+ +AC H GL++ G +
Sbjct: 353 RNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTV 412
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ M + ++ + + ++D+ + G +++A + K D++ W S++ V+G
Sbjct: 413 HEYM-CRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMK-KKDSVSWTSMILGLAVNG 470
>gi|449436789|ref|XP_004136175.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 240/457 (52%), Gaps = 29/457 (6%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
+P HI QI AQLI L S PL A C S + FTH P++F+ N+
Sbjct: 24 SPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFLF---FTHIPKPHVFICNS 80
Query: 80 LIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
LIR P + ++ + +++ ++ +++T+ F L S A F L G+ +H HV
Sbjct: 81 LIRAFSHSKIPHTPLFLYTH-MNRNSISPNNYTFPFVLKSLADFKDLVG---GQSVHTHV 136
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ V TL+ YAS + KKVFD+M +W +I GY +
Sbjct: 137 VKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGY-----RVSFM 191
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
+AL++F M +GV P T+V L+ + G +E G +H +++ + E DV
Sbjct: 192 LDDALIVFEQM--QYAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRW--EVDVV 247
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+GTAL+DMY KCG + AL +F M+EKNV TW G+A G EAI M + G
Sbjct: 248 LGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEAIAWFKRMDEEG 307
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
V+ + VT ++ +AC H+GLV G +F ++ ++G P IKHYSC+VD+L R G +EE
Sbjct: 308 VEADDVTLVAVLSACSHSGLVNSGRQIFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEE 367
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I +P + +W SLL+ HG + + E + L++++PE +V
Sbjct: 368 ACVMIKDMPFEATRSMWGSLLTGSRAHGSLEVSEIAARRLVEMEPE--------NGGYYV 419
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA +W +VE VR+ MK + ++ + GSS ++
Sbjct: 420 VLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSSSVE 456
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 218/368 (59%), Gaps = 22/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ L L G+ +H + + G N+ V ++ Y DI S +
Sbjct: 212 DEVTMVSLVPACAQ---LGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQ 268
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCV 223
+VF+++ + +W +M++G AK F AL LF+ M ++ ++ + T+V V
Sbjct: 269 EVFNRIREKDVLSWTSMLSGL------AKSGYFQEALALFQKM--QLNKIELDEITLVGV 320
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS +Q G L+ G +H ++K + D+ + TALVDMY+KCG +D AL +F RMR +
Sbjct: 321 LSACAQTGALDQGKYIHLLIDK--FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV TW A+ G+A+HG G +AI L D M + P+ VTF +L AC HAGLV+EGL +F
Sbjct: 379 NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF 438
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
MK+K+ +EP ++HY C+VDLL RA +++A FI +PIK +++LW +LL AC G
Sbjct: 439 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 498
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
L EK+G+ +++L+P+ +C +V LSN+YA +W +RKQMK K +E
Sbjct: 499 FDLAEKIGRRVIELEPD------SCGR--YVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 550
Query: 464 EPGSSILQ 471
PG S ++
Sbjct: 551 TPGCSWIE 558
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 222/442 (50%), Gaps = 38/442 (8%)
Query: 5 PGHRCFALLKLKAI----TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQST 59
P +C L+ + + T+ S KQ HA L+ T+ L +P ++LI +
Sbjct: 4 PSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSG--DL 61
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+FT P+ F+ NT+IR P ++V ++ + V +G+ D++TY F L +
Sbjct: 62 NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGV-PVDNYTYPFVLAA 120
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
CAR L + LGR+ H V K GF ++ V LI FY + VFD+ +R
Sbjct: 121 CAR---LGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
TWN MIN + ++ K AF+ L D + + ++P + TMV ++ +QLG LE
Sbjct: 178 VTWNIMINAHLNKGLSEK--AFDLL----DEMTKLDNLRPDEVTMVSLVPACAQLGNLER 231
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +H Y K + EN + + A++DMY KC +++A +F+R+REK+VL+WT+M +G+
Sbjct: 232 GKFLHSY-SKELGLDEN-LRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGL 289
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVE 353
A G EA+ L M+ ++ + +T + +AC G +++G +HL + K+ +
Sbjct: 290 AKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHL---LIDKFEIN 346
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
+ + +VD+ + G ++ A + ++ + W +L+ +HG GE +
Sbjct: 347 CDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGH---GEDAISL 402
Query: 414 LLQLQ------PEVTFVDVACT 429
Q++ +VTF+ + C
Sbjct: 403 FDQMEHDKLMPDDVTFIALLCA 424
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 222/405 (54%), Gaps = 25/405 (6%)
Query: 71 PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
P + F NT++R V + L D TY + +CAR +L G
Sbjct: 769 PLDPFPLNTVLRIAAGSPRPRVALELHRRRLALPDTHTYPPLIQACARLLALRE---GEC 825
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS--ATWNAMINGYCSQ 188
+H K GF+ V V +L+H Y + S KVFD+MP+R +WN+M+N + +
Sbjct: 826 LHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAAN 885
Query: 189 SKKAKDCAFNALVLFRDML-VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + L +F +ML VD + P T+V VL+ ++ G L G VH Y+EK
Sbjct: 886 GRPNE-----VLTVFWEMLGVDFA---PDGFTIVSVLTACAEFGALALGRRVHVYVEKVG 937
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIR 306
+ EN + AL+D+Y+KCG +++A IF M + V++WT++ G+A +G G EA+
Sbjct: 938 LV-ENS-HVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 995
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M + P +T + AC H GLV++G FD MK +G+ P I+H C+VDLL
Sbjct: 996 LFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLL 1055
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG +EEAY++I+ +P++P+A++WR+LL +C +H + LG+ + L++L P
Sbjct: 1056 GRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDP------- 1108
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S D+V LSN+YA+ W DV +RK M RV PG S+++
Sbjct: 1109 -GHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVE 1152
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 225/400 (56%), Gaps = 23/400 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVH 134
+ + LI+ ++ + +F G L D+FT LGS R C+ L + G+Q+H +
Sbjct: 60 MVSGLIQFEFNENGLFLFREMHELGFLP-DEFT----LGSVLRGCAGLRASYAGKQVHAY 114
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
V K G+ FN++V ++L H Y + + G+KV M +R+ WN +I G A++
Sbjct: 115 VLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAG------NAQN 168
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
F ++ +M+ +SG++P T+V V+S S++L L G +H E + V
Sbjct: 169 GHFEGVLDLYNMM-KMSGLRPDKITLVSVISSSAELATLFQGQQIHA--EAIKAGANSAV 225
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+ ++L+ MYSKCGCL++++ + + W++M HG+G EA+ L + M
Sbjct: 226 AVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQE 285
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G+ N VTF SL AC H GL E+G+ F M K+G++P ++HY+C+VDLLGR+G L+E
Sbjct: 286 GLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDE 345
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I +P++ D ++W++LLSAC +H + + + + +L+L P+ S +V
Sbjct: 346 AEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQ--------DSATYV 397
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
LSNI+ASA+RW DV VR M+ + V+ EPG S L+
Sbjct: 398 LLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKN 437
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 142/297 (47%), Gaps = 22/297 (7%)
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
M N++ LI+ + + D+ S KVFD+M R+ ATWNAM++G N L
Sbjct: 20 MRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNE-----NGL 74
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFR+M G P + T+ VL + L G VH Y+ K Y E ++ +G++L
Sbjct: 75 FLFREM--HELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY--EFNLVVGSSL 130
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY K G L + MR +NV+ W + G A +G + L + M+ G++P+
Sbjct: 131 AHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDK 190
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+T S+ ++ + +G + K G + S ++ + + G LE++ ++
Sbjct: 191 ITLVSVISSSAELATLFQGQQIHAE-AIKAGANSAVAVLSSLISMYSKCGCLEDSMKALL 249
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACT 429
PD++LW S+++A HG GE+ + Q++ E VTF+ + AC+
Sbjct: 250 DCE-HPDSVLWSSMIAAYGFHGR---GEEAVHLFEQMEQEGLGGNDVTFLSLLYACS 302
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP ++ L++ + + G LD+A+ +F M E+NV TW AM +G+ + L
Sbjct: 18 MPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLF 77
Query: 309 DSMRDCGVKPNAVTFTSLFAACC--HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
M + G P+ T S+ C A + +H + K+G E ++ S + +
Sbjct: 78 REMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAY---VLKYGYEFNLVVGSSLAHMY 134
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQPE-VTF 423
++G L E I + I+ + + W +L++ A N H + L + L+P+ +T
Sbjct: 135 MKSGSLGEGEKVIKAMRIR-NVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITL 193
Query: 424 VDVACTSEDFVAL---SNIYASA 443
V V +S + L I+A A
Sbjct: 194 VSVISSSAELATLFQGQQIHAEA 216
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 212/395 (53%), Gaps = 50/395 (12%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV L +C + + LG Q+H V G + ++ V L+ YA D+ S K+F
Sbjct: 146 TYVSVLSACGK--GTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLF 203
Query: 168 D-------------------------------QMPMRSSATWNAMINGYCSQSKKAKDCA 196
D +MP R + +W AMI+GY Q+ + ++
Sbjct: 204 DGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYV-QAARFRE-- 260
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL +FR+M S V + TMV V++ +QLG LE G V YM + + D F+
Sbjct: 261 --ALEMFREM--QCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI--KMDAFV 314
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
G AL+DMYSKCG ++ AL +F M ++ TWTA+ G+A++G G EAI + M
Sbjct: 315 GNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSE 374
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ VTF + AC HAGLV++G F +M+ + + P++ HY CI+DL GRAG + EA
Sbjct: 375 TPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEAL 434
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+ I +P+ P++ +W +LL+AC VHG+ +GE V + LLQ+ PE + V + L
Sbjct: 435 DAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTV--------YTLL 486
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SNIYA RW DV +R + K ++ EPG S+++
Sbjct: 487 SNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIE 521
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 173/385 (44%), Gaps = 52/385 (13%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+D+V +A +++G + D +T+ L + AR S + + R +H HV K G N V
Sbjct: 25 EDAVAGYARMLARGAMP-DAYTFPPLLKAVARGSSAAPV---RAVHAHVVKFGMGRNAHV 80
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
AT+L+ YA+ D ++ + + + + WNA+I+G+ + + C F DM
Sbjct: 81 ATSLVTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCS-----FVDM 135
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQ-LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
+G PT T V VLS + G + G VHG + + +P D+ + ALVDMY+
Sbjct: 136 AR--AGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLP--DLRVENALVDMYA 191
Query: 266 KC-------------------------------GCLDNALLIFSRMREKNVLTWTAMATG 294
+C G +D A +F RM E++ ++WTAM G
Sbjct: 192 ECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDG 251
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ EA+ + M+ V + T S+ AC G +E G + M S+ G++
Sbjct: 252 YVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYM-SRQGIKM 310
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL--SACNVHGDVALGEKVGK 412
+ ++D+ + G +E A + + + D W +++ A N +G+ A+
Sbjct: 311 DAFVGNALIDMYSKCGSIERALDVFKDMHHR-DKFTWTAIILGLAVNGYGEEAIEMFHRM 369
Query: 413 ILLQLQP-EVTFVDV--ACTSEDFV 434
I + P EVTF+ V ACT V
Sbjct: 370 IGVSETPDEVTFIGVLTACTHAGLV 394
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/430 (33%), Positives = 224/430 (52%), Gaps = 45/430 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F + N+ ++ +I + ++ +F +S G+L D T L +C
Sbjct: 316 IFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLP-DKITLASLLYACINCR 374
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L+ + RQ+H + G + N++VA L+HFY+ + + +FD M +R S +W+
Sbjct: 375 NLTQV---RQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSV 431
Query: 181 MINGYCSQSKKAKDC------------------------AFNALVLFRDMLVDVSGVKPT 216
M+ G+ ++ +C A +LVLF M + GV P
Sbjct: 432 MVGGF-AKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREE--GVVPD 488
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
MV V+ ++LG + + Y+++ + + DV +GTA++DM++KCGC+++A I
Sbjct: 489 KVAMVTVVFACAKLGAMHKARTIDDYIQRKKF--QLDVILGTAMIDMHAKCGCVESAREI 546
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F RM EKNV++W+AM HG+G +A+ L M G+ PN +T SL AC HAGLV
Sbjct: 547 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLV 606
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
EEGL F M + V +KHY+C+VDLLGRAG L+EA I + ++ D LW + L
Sbjct: 607 EEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLG 666
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC H DV L EK LL+LQP+ ++ LSNIYA+A RW DV R M
Sbjct: 667 ACRTHKDVVLAEKAATSLLELQPQ--------NPGHYILLSNIYANAGRWEDVAKTRDLM 718
Query: 457 KVKRVETEPG 466
+R++ PG
Sbjct: 719 SQRRLKKIPG 728
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
L+ Y ++I + +FD+M R TW MI GY K A +LVLF M
Sbjct: 198 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK-----ANESLVLFEKMRE 252
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
+ GV P MV V+ ++LG + + Y+++ + + DV +GTA++DMY+KCG
Sbjct: 253 E--GVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF--QLDVILGTAMIDMYAKCG 308
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
C+++A IF RM EKNV++W+AM HG+G +A+ L M G+ P+ +T SL
Sbjct: 309 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 368
Query: 329 AC 330
AC
Sbjct: 369 AC 370
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 139/294 (47%), Gaps = 38/294 (12%)
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
Y+ AL +C + RQ+H + G + N++VA LI+FY+ + + +FD
Sbjct: 84 YISALVNCRNLTQV------RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFD 137
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
M +R S +W+ M+ G+ K D N FR+++ G +P + T+ V+
Sbjct: 138 GMCVRDSVSWSVMVGGFA----KVGD-YINCFGTFRELIR--CGARPDNYTLPFVIRACR 190
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L L+ ALVDMY KC +++A +F +M+E++++TW
Sbjct: 191 DLKNLQM-----------------------ALVDMYVKCREIEDARFLFDKMQERDLVTW 227
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T M G A GK NE++ L + MR+ GV P+ V ++ AC G + + + D+
Sbjct: 228 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RIIDDYIQ 286
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + + + ++D+ + G +E A + K + I W ++++A HG
Sbjct: 287 RKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHG 339
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 165/380 (43%), Gaps = 63/380 (16%)
Query: 63 HFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
F+F +L + +I C +S+++F +G++ D V + +CA+
Sbjct: 213 RFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP-DKVAMVTVVFACAK 271
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
L + R I ++ ++ F +V++ T +I YA + S +++FD+M ++ +W
Sbjct: 272 ---LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 328
Query: 179 NAMIN--GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS------SQL 230
+AMI GY Q +KA D LFR ML SG+ P T+ +L +Q+
Sbjct: 329 SAMIAAYGYHGQGRKALD-------LFRMML--SSGMLPDKITLASLLYACINCRNLTQV 379
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
+ A VHG ++ ++ + LV YS LD+A +F M ++ ++W+
Sbjct: 380 RQVHAQASVHGMLQ--------NLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSV 431
Query: 291 MATGMA----------------------------IHGKGNEAIRLLDSMRDCGVKPNAVT 322
M G A G NE++ L D MR+ GV P+ V
Sbjct: 432 MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVA 491
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
++ AC G + + + D ++ K + + + ++D+ + G +E A +
Sbjct: 492 MVTVVFACAKLGAMHKARTIDDYIQRK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRM 550
Query: 383 PIKPDAILWRSLLSACNVHG 402
K + I W ++++A HG
Sbjct: 551 EEK-NVISWSAMIAAYGYHG 569
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/450 (34%), Positives = 231/450 (51%), Gaps = 53/450 (11%)
Query: 68 HFDPPNLFLFNTLI-RCTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCARFCSLST 124
+ D N+F +N++I DSV + S L+ + T+ A+ SC+ L +
Sbjct: 35 YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 94
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
GRQ H GF ++ V++ L+ Y+ ++ + +FD++ R+ +W +MI G
Sbjct: 95 ---GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 151
Query: 185 YCSQSKKAKDCAFNALVLFRDM------------------------------LVDVSGVK 214
Y D A AL +F M +V +
Sbjct: 152 YVQN-----DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN 206
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
T+ VL + G G C+H + K E++VF+GT+++DMY KCG ++ A
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGL--ESNVFVGTSIIDMYCKCGKVEMAR 264
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
F RMREKNV +W+AM G +HG EA+ + M GVKPN +TF S+ AAC HAG
Sbjct: 265 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
L+EEG H F M ++ VEP ++HY C+VDLLGRAG+L+EA++ I G+ ++PD ++W +L
Sbjct: 325 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGAL 384
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC +H +V LGE + L +L P+ C +V LSNIYA A RW DVE +R
Sbjct: 385 LGACRMHKNVDLGEISARKLFELDPK------NCGY--YVLLSNIYADAGRWEDVERMRI 436
Query: 455 QMKVKRVETEPGSSI--LQTTTHYTLDGFR 482
MK + PG S+ ++ H L G R
Sbjct: 437 LMKNSGLVKPPGFSLVDIKGRVHVFLVGDR 466
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 244/458 (53%), Gaps = 40/458 (8%)
Query: 25 KQIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+++HA +I + PP+Y +LI LY + + + V N+ + +I
Sbjct: 497 QRVHAHMIKTCYE-PPVYLRTRLIVLYNKCRCLGDARR----VLDEMPERNVVSWTAMIS 551
Query: 83 CTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ +++ +F + G ++FT+ L SC S S LGRQIH V K
Sbjct: 552 GYSQRGYASEALHLFVEMLMSGTAP-NEFTFATVLTSCT---SSSGFQLGRQIHSLVIKT 607
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
F ++ V ++L+ YA I ++VFD +P R + A+I+GY +
Sbjct: 608 SFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE----- 662
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT---FYMPENDVF 255
AL LFR + + G++ T VL+ S L L+ G VH ++ + FY V
Sbjct: 663 ALDLFRRLQRE--GMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY-----VV 715
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ +L+DMYSKCG L + IF M E+ V++W AM G + HG G EA+ L M++
Sbjct: 716 LQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEEN 775
Query: 316 -VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLE 373
VKP++VTF ++ + C H G+ + GL +F M K G EP I+HY C+VDL GRAG +E
Sbjct: 776 KVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVE 835
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA+ FI +P +P A +W SLL AC VH +V +GE V + LL+++ E + ++
Sbjct: 836 EAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESE--------NAGNY 887
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSN+YASA RW DV +VR+ MK K V EPG S ++
Sbjct: 888 VILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIE 925
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 153/294 (52%), Gaps = 16/294 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H H+ K + V + T LI Y + + ++V D+MP R+ +W AMI+GY S
Sbjct: 496 GQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGY-S 554
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
Q A + AL LF +ML +SG P + T VL+ + + G +H + KT
Sbjct: 555 QRGYASE----ALHLFVEML--MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 608
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E+ +F+G++L+DMY+K G + A +F + E++V++ TA+ +G A G EA+ L
Sbjct: 609 F--ESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDL 666
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLL 366
++ G++ N VT+ S+ A ++ G + + +++K + ++ + ++D+
Sbjct: 667 FRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK--LPFYVVLQNSLIDMY 724
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+ G L + +P + I W ++L + HG LG + ++ ++ E
Sbjct: 725 SKCGSLTYSRRIFDSMPERT-VISWNAMLVGYSKHG---LGREAVELFKLMKEE 774
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 8/214 (3%)
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
SQ + E G VH +M KT Y P V++ T L+ +Y+KC CL +A + M E+NV++
Sbjct: 489 SQTAIRE-GQRVHAHMIKTCYEPP--VYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVS 545
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WTAM +G + G +EA+ L M G PN TF ++ +C + + G + ++
Sbjct: 546 WTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH-SLV 604
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
K E HI S ++D+ +AG + EA G+P + D + +++S + + L
Sbjct: 605 IKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPER-DVVSCTAIISG---YAQLGLD 660
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
E+ + +LQ E + + ALS + A
Sbjct: 661 EEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 694
>gi|449498539|ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 464
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 240/457 (52%), Gaps = 29/457 (6%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
+P HI QI AQLI L S PL A C S + FTH P++F+ N+
Sbjct: 24 SPLHIPQIQAQLILQNLHSHPLIAHHFINTCHHLHLLGSAFLF---FTHIPKPHVFICNS 80
Query: 80 LIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
LIR P + ++ + +++ ++ +++T+ F L S A F L G+ +H HV
Sbjct: 81 LIRAFSHSKIPHTPLFLYTH-MNRNSISPNNYTFPFVLKSLADFKDLVG---GQSVHTHV 136
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ V TL+ YAS + KKVFD+M +W +I GY +
Sbjct: 137 VKSGHASDLYVQNTLMDVYASCGKMGLCKKVFDEMLHTDVVSWTILIMGY-----RVSFM 191
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
+AL++F M +GV P T+V L+ + G +E G +H +++ + E DV
Sbjct: 192 LDDALIVFEQM--QYAGVDPNRVTIVNALAACASFGAIEMGVWIHEFVKTKRW--EVDVV 247
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+GTAL+DMY KCG + AL +F M+EKNV TW G+A G EAI M + G
Sbjct: 248 LGTALIDMYGKCGRIKEALAVFQAMKEKNVYTWNVFINGLASAKCGEEAIAWFKRMDEEG 307
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
V+ + VT ++ +AC H+GLV G +F ++ ++G P IKHYSC+VD+L R G +EE
Sbjct: 308 VEADDVTLVAVLSACSHSGLVNSGRQIFWSLIHGRFGFSPGIKHYSCMVDILARNGCIEE 367
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I +P + +W SLL+ HG + + E + L++++PE +V
Sbjct: 368 ACVMINDMPFEATRSMWGSLLTGSRAHGSLEVSEIAARKLVEMEPE--------NGGYYV 419
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA +W +VE VR+ MK + ++ + GSS ++
Sbjct: 420 VLSNIYAEMGKWSEVEKVREIMKERGLKKDLGSSSVE 456
>gi|297818474|ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322958|gb|EFH53379.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 399
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/375 (36%), Positives = 219/375 (58%), Gaps = 21/375 (5%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKK 165
T+ F + +C + C S +G+QIH V K G F+ + V T ++ Y +K + K
Sbjct: 12 LTFYFLIVACFKACLFS---VGKQIHCWVVKNGVFLSDGHVQTGILRIYVEDKVLLDAHK 68
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA--LVLFRDMLVDVSGVKPTDTTMVCV 223
VFD++P W+ ++NGY C + L +FR+MLV GV+P + ++
Sbjct: 69 VFDEIPKPDVVKWDVLMNGYVR-------CGLGSEGLEVFREMLV--RGVEPDEFSVTTA 119
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L+ +Q+G L G +H +++K ++ E+DVF+GTALVDMY+KCGC++ A+ +F ++ +
Sbjct: 120 LTACAQVGALAQGKWIHEFVKKKRWI-ESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRR 178
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
NV +W A+ G A +G +A+ LD M R+ G+KP++V + AAC H G ++EG +
Sbjct: 179 NVFSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAM 238
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
NM++++G+ P +HYSCIVDL+ RAG L++A + I +P+KP A +W +LL+ C H
Sbjct: 239 LGNMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHK 298
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+V LGE K LL L+ + A V LSNIY S +R P+ VR ++ + +
Sbjct: 299 NVELGELAVKNLLDLEKGNAEEEEAA----LVQLSNIYFSVQRNPEASKVRGMIEQRGIR 354
Query: 463 TEPGSSILQTTTHYT 477
PG S+L+ + T
Sbjct: 355 KTPGWSVLEVDGNVT 369
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 234/456 (51%), Gaps = 32/456 (7%)
Query: 25 KQIHAQLITNAL---KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
K +HA ++ N PL LI +Y ++ VF ++ + +I
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMY----VKCENLAYARRVFDGLSKASIISWTAMI 300
Query: 82 ----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
C + V +F + +G+ ++ T + + C + L LG+ +H +
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFP-NEITMLSLVKECG---TAGALELGKLLHAFTLR 356
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF ++++AT I Y D+ S + VFD + W+AMI+ Y +C
Sbjct: 357 NGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQN-----NCID 411
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A +F M G++P + TMV +L + ++ G LE G +H Y++K + D+ +
Sbjct: 412 EAFDIFVHMTG--CGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGI--KGDMILK 467
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T+ VDMY+ CG +D A +F+ ++++ W AM +G A+HG G A+ L + M GV
Sbjct: 468 TSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVT 527
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN +TF AC H+GL++EG LF M ++G P ++HY C+VDLLGRAG L+EA+
Sbjct: 528 PNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHE 587
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I +P++P+ ++ S L+AC +H ++ LGE K L L+P + + V +S
Sbjct: 588 LIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYN--------VLMS 639
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
NIYASA RW DV +R+ MK + + EPG S ++
Sbjct: 640 NIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVN 675
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 19/326 (5%)
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLT-FDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
FL + I+ P D+ ++AY +G T D+F L +C C + + LG+++H
Sbjct: 94 FLITSYIKNNCPADAAKIYAYM--RGTDTEVDNFVIPSVLKAC---CLIPSFLLGQEVHG 148
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
V K GF +V V LI Y+ ++ + +FD++ + +W+ MI Y
Sbjct: 149 FVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSY-----DRS 203
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL L RDM V VKP++ M+ + V ++L L+ G +H Y+ + ++
Sbjct: 204 GLLDEALDLLRDM--HVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSG 261
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
V + TAL+DMY KC L A +F + + ++++WTAM NE +RL M
Sbjct: 262 VPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG 321
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
G+ PN +T SL C AG +E G LH F + G + + +D+ G+ G
Sbjct: 322 EGMFPNEITMLSLVKECGTAGALELGKLLHAF---TLRNGFTLSLVLATAFIDMYGKCGD 378
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSA 397
+ A + K D ++W +++S+
Sbjct: 379 VRSARSVFDSFKSK-DLMMWSAMISS 403
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/526 (31%), Positives = 254/526 (48%), Gaps = 85/526 (16%)
Query: 23 HIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++QIHAQ+I TN L ++LI +C+ VF+ PN F+F LI
Sbjct: 21 ELRQIHAQMIKTNLLNHQFTVSRLIA-FCSLSGVSGGLDYASSVFSRIQHPNSFIFFALI 79
Query: 82 R----CTPPQDSVLVFAYWVSKGLLTFD---DFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+ + P +S++++A +S L + +F+ L +C + + GRQ+H
Sbjct: 80 KGFSDTSNPVESLILYARMLS--CLNYSSGVEFSIPSVLKACGKLLAFDE---GRQVHGQ 134
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN--------------- 179
V K F+ V +++ Y +I ++VFD+MP R +WN
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194
Query: 180 ----------------AMINGY-----CSQSKKA------KD---------------CAF 197
AMI+GY C ++K KD C
Sbjct: 195 SELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPM 254
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LFR+ML G++P +V VLS + LG +E G +H Y+ + + FIG
Sbjct: 255 KALDLFREMLS--LGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMN-KIELSSGFIG 311
Query: 258 TALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
+AL+DMYSKCG ++NA +F + +N+ W +M +G+AIHG EA+ + M +
Sbjct: 312 SALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDI 371
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
+PN +TF L + C H GLVEEG F++M K+ + P I+HY C++DL GRAG LE+A
Sbjct: 372 EPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDAL 431
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I +P + D + W+++LSA HG + +G+ ++L P+ S +V L
Sbjct: 432 GVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPD--------DSSSYVLL 483
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPG--SSILQTTTHYTLDG 480
SNIYA A RW DV +R M+ + V+ G S ++ H L G
Sbjct: 484 SNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXG 529
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/419 (34%), Positives = 228/419 (54%), Gaps = 29/419 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRC-------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+F P F +N+LIR P D+VLV+ + G + FT FAL +C+
Sbjct: 80 LFDQIPEPTAFCYNSLIRALSSAAGVAPAADTVLVYRRMLRAGSPLPNSFTLAFALKACS 139
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSA 176
+L GRQ+H +RG + V T L++ YA ++++ + VFD M ++ A
Sbjct: 140 VVPALGE---GRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 196
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
W+AMI GY AL LFR+M + V P + TMV V+S ++ G L+ G
Sbjct: 197 AWSAMIGGYSRVG-----MVNEALGLFREM--QAADVNPDEVTMVSVISACAKAGALDLG 249
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
VH ++++ D+ + TAL+DMY+KCG ++ A +F M E++ W+AM G+A
Sbjct: 250 RWVHAFIDRKGITV--DLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLA 307
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
IHG A++L M + V+PN VTF + +AC H+GLV EG + M+ + G++P +
Sbjct: 308 IHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIKPSM 366
Query: 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
++Y C+VDL R+ L+EAY+F+ G+ I P++++WR+LL A + + K LL+
Sbjct: 367 ENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLE 426
Query: 417 LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
L+P C E++V LSN+YAS +W V +RK+MK V G S ++ +
Sbjct: 427 LEP--------CNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGY 477
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 244/456 (53%), Gaps = 30/456 (6%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP-NLFLFNTLIRC- 83
Q+H Q++ + +L +++ SP + +P N + +NTL+R
Sbjct: 11 QVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAF 70
Query: 84 ------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW-LGRQIHVHVT 136
TPP ++ +F S D+FT+ F L C+R S L LG+Q+H +T
Sbjct: 71 SQTPLPTPPFHALSLFLSMPSPP----DNFTFPFLLKCCSR----SKLPPLGKQLHALLT 122
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K GF ++ + L+H Y+ D+ + +FD+MP R +W +MI G + D
Sbjct: 123 KLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDVVSWTSMIGGLVNH-----DLP 177
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
A+ LF ML GV+ + T++ VL + G L G VH +E+ + +
Sbjct: 178 VEAINLFERMLQ--CGVEVNEATVISVLRACADSGALSMGRKVHANLEEWGIEIHSKSNV 235
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
TALVDMY+K GC+ +A +F + ++V WTAM +G+A HG +AI + M GV
Sbjct: 236 STALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGV 295
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KP+ T T++ AC +AGL+ EG LF +++ ++G++P I+H+ C+VDLL RAG L+EA
Sbjct: 296 KPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAE 355
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+F+ +PI+PD +LWR+L+ AC VHGD E++ K L++Q A S ++
Sbjct: 356 DFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMK-HLEIQDM-----RADDSGSYILA 409
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
SN+YAS +W + VR+ M K + PG+S ++
Sbjct: 410 SNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEV 445
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 234/455 (51%), Gaps = 37/455 (8%)
Query: 26 QIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPN-------LFLF 77
Q HA ++ L S P LI Y S+ + F FD +
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGY-------SSSGLFDFASRLFDGAEDKDVVTWTAMI 176
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ +R ++++ F G+ ++ T V L + + + + GR +H +
Sbjct: 177 DGFVRNGSASEAMVYFVEMKKTGVAA-NEMTVVSVLKAAGK---VEDVRFGRSVHGLYLE 232
Query: 138 RGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
G + +V + ++L+ Y +KVFD+MP R+ TW A+I GY QS+ C
Sbjct: 233 TGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV-QSR----CF 287
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
+++F +ML S V P + T+ VLS + +G L G VH YM K E +
Sbjct: 288 DKGMLVFEEMLK--SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN--SIEINTTA 343
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
GT L+D+Y KCGCL+ A+L+F R+ EKNV TWTAM G A HG +A L +M V
Sbjct: 344 GTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
PN VTF ++ +AC H GLVEEG LF +MK ++ +EP HY+C+VDL GR G LEEA
Sbjct: 404 SPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAK 463
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I +P++P ++W +L +C +H D LG+ +++LQP S + L
Sbjct: 464 ALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS--------HSGRYTLL 515
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+N+Y+ ++ W +V VRKQMK ++V PG S ++
Sbjct: 516 ANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIE 550
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 187/327 (57%), Gaps = 17/327 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T +I YA I + +FD + R + WN MI+GY + L+LFR ML
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNE-----GLLLFRQML 64
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ V+P + T++ VLS Q G LE G VH Y+E +V +GT+L+DMYSKC
Sbjct: 65 N--AKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGI--NVRVGTSLIDMYSKC 120
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L++A L+F R+ K+V+ W +M G A+HG +A+RL M G +P +TF +
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC HAGLV EG F +MK ++G+EP ++HY C+V+LLGRAG+LEEAY + + I D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+LW +LL AC +HG++ALGE++ + L+ S +V LSNIYA+A W
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQN--------LANSGTYVLLSNIYAAAGNWE 292
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTT 474
V VR MK E EPG S ++
Sbjct: 293 GVARVRTLMKESGFEKEPGCSSIEVNN 319
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 99/192 (51%), Gaps = 7/192 (3%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MPE + TA++ Y+K G +D A ++F + E++ + W M G A HG NE + L
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M + V+PN VT ++ +AC G +E G + +++ G+ +++ + ++D+ +
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENN-GIGINVRVGTSLIDMYSK 119
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK--ILLQLQP-EVTFVD 425
G LE+A I K D + W S++ +HG ++ K ++ QP ++TF+
Sbjct: 120 CGSLEDARLVFERISNK-DVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIG 178
Query: 426 V--ACTSEDFVA 435
V AC+ V+
Sbjct: 179 VLNACSHAGLVS 190
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P + +L+F ++ + ++ T + L +C + +L T GR +H ++ G NV
Sbjct: 53 PNEGLLLFRQMLNAKVRP-NEVTVLAVLSACGQTGALET---GRWVHSYIENNGIGINVR 108
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
V T+LI Y+ + + VF+++ + WN+M+ GY + +AL LF++
Sbjct: 109 VGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHG-----FSQDALRLFKE 163
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M + G +PTD T + VL+ S GL+ G Y K Y E V +V++
Sbjct: 164 MC--MIGYQPTDITFIGVLNACSHAGLVSEGWKFF-YSMKDEYGIEPKVEHYGCMVNLLG 220
Query: 266 KCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGK 300
+ G L+ A + M +++ + W + +HG
Sbjct: 221 RAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGN 256
>gi|356567046|ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Glycine max]
Length = 505
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 243/476 (51%), Gaps = 40/476 (8%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
+C +LL + + ++QI AQ+ + L + +C+ S FV
Sbjct: 17 QQCLSLLN--SCRSMDQLRQIQAQVHVSGLYQDTRVLSELVYFCSLSPSKNLRHARSFVH 74
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF----DDFTYVFALGSCARFCSL 122
H P+ +N LIR DS L A+WV + + + T+ F L SCA
Sbjct: 75 -HAATPSPISWNILIRGYAASDSPLE-AFWVFRKMRERGAMPNKLTFPFLLKSCA---VA 129
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S L+ G+Q+H K G +V V LI+FY K I +KVF +MP R+ +WN+++
Sbjct: 130 SALFEGKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMPERTVVSWNSVM 189
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
C +S D + F M G +P +T+MV +LS ++LG L G VH
Sbjct: 190 TA-CVESLWLGD----GIGYFFRMWG--CGFEPDETSMVLLLSACAELGYLSLGRWVHSQ 242
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ V +GTALVDMY K G L A +F RM +NV TW+AM G+A HG G
Sbjct: 243 L--VLRGMVLSVQLGTALVDMYGKSGALGYARDVFERMENRNVWTWSAMILGLAQHGFGE 300
Query: 303 EAIRLLDSM-------RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
EA+ L M RD ++PN VT+ + AC HAG+V+EG F +M+ G++P
Sbjct: 301 EALELFAIMNNNNNDNRD--IRPNYVTYLGVLCACSHAGMVDEGYQYFHDMECVHGIKPL 358
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC---NVHGDVALGEKVGK 412
+ HY +VD+LGRAG LEEAY FI +PI+PD ++WR+LLSAC +VH +GE+V K
Sbjct: 359 MTHYGAMVDVLGRAGRLEEAYEFIQSMPIEPDPVVWRTLLSACTVHDVHDHTGIGERVSK 418
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
LL +P + V ++N+YA W + +VR+ M+ ++ G S
Sbjct: 419 KLLLKEPR--------RGGNLVIVANMYAEVGMWEEAANVRRVMRDGGMKKVAGES 466
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 252/464 (54%), Gaps = 33/464 (7%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K +H Q++ L S LY + L+ +Y A+ K F+F N ++ ++I
Sbjct: 99 KVLHGQVVKYMLHSD-LYIETTLLNMY----AACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P +++L++ G + D+ T + +CA L L +G ++H H+ +
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGF-SPDEVTMATLVSACA---ELKDLGVGMKLHSHIREM 209
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
++ + L++ YA D+ + ++VFD++ + W+A+I GY ++ +
Sbjct: 210 DMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTE----- 264
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL LFR+ + S ++P + T++ V+S +QLG LE G VH Y+ +T + V +
Sbjct: 265 ALQLFRE-VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRT--QKGHSVSLNN 321
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L+DM+SKCG +D A IF M K++++W +M G A+HG G EA+ M+ ++P
Sbjct: 322 SLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQP 381
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ +TF + AC HAGLV+EG LF +++ +GV +HY C+VDLL RAG L EA F
Sbjct: 382 DEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREF 441
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +P++PD +W S+L AC V+ ++ LGE+ + LL+L+P V ++ LSN
Sbjct: 442 IRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGV--------YILLSN 493
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSS--ILQTTTHYTLDG 480
IYA + W +V+ VR+ M K ++ PG S ++ H L G
Sbjct: 494 IYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAG 537
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 190/388 (48%), Gaps = 40/388 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF H ++ +N+++R P+ ++ + + + D FT+ L CA
Sbjct: 34 VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+G+ +H V K ++ + TTL++ YA+ D+ S + +F++M R+ W +
Sbjct: 94 EFK---VGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+GY C AL+L++ M D G P + TM ++S ++L L G +H
Sbjct: 151 MISGYMKNH-----CPNEALLLYKKMEED--GFSPDEVTMATLVSACAELKDLGVGMKLH 203
Query: 241 GYMEKTFYMPENDVFI----GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
++ E D+ I G+ALV+MY+KCG L A +F ++ +K+V W+A+ G
Sbjct: 204 SHIR------EMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYV 257
Query: 297 IHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEP 354
+ + EA++L + ++PN VT ++ +AC G +E G + D + +++ G
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG-EKVGKI 413
+ + ++D+ + G ++ A + K D I W S+++ +HG LG E + +
Sbjct: 318 SLN--NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALHG---LGREALAQF 371
Query: 414 LL----QLQP-EVTFVDV--ACTSEDFV 434
L LQP E+TF+ V AC+ V
Sbjct: 372 RLMQTTDLQPDEITFIGVLTACSHAGLV 399
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 196/331 (59%), Gaps = 16/331 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+++ TT+I YA D + ++VFD MP WNA+I+ Y Q+ K K+ AL +
Sbjct: 297 DIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSY-QQNGKPKE----ALAI 351
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR++ ++ KP + T+ L+ +QLG ++ G +H Y++K + + I T+L+D
Sbjct: 352 FRELQLN-KNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGI--KLNFHITTSLID 408
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKCG L+ AL +F + ++V W+AM G+A+HG G AI L M++ VKPNAVT
Sbjct: 409 MYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVT 468
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FT+L AC H+GLV+EG F+ M+ +GV P KHY+C+VD+LGRAG LEEA I +
Sbjct: 469 FTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKM 528
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PI P A +W +LL AC ++G+V L E LL+ +V LSNIYA
Sbjct: 529 PIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSN--------NHGAYVLLSNIYAK 580
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
A +W V +R+ MKV +E EPG S ++
Sbjct: 581 AGKWDCVSRLRQHMKVSGLEKEPGCSSIEVN 611
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/450 (27%), Positives = 214/450 (47%), Gaps = 62/450 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
H+KQ+HA ++ L P A + C +SP S VF PNL+ +NTLIR
Sbjct: 45 HLKQLHAHMLRTGLFFDPPSATKLFTACAL-SSPSSLDYACKVFDQIPRPNLYTWNTLIR 103
Query: 83 C---TP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+P P +LVF + + + +T+ F + + +S+L G+ IH V K
Sbjct: 104 AFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATE---VSSLLAGQAIHGMVMKA 160
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
F ++ ++ +LIHFY+S D+ S VF ++ + +WN+MI+G+ +
Sbjct: 161 SFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEE----- 215
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL LF+ M ++ +P TMV VLS ++ LEFG Y+E+ + ++ +
Sbjct: 216 ALQLFKRMKME--NARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGI--DINLILSN 271
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR------ 312
A++DMY KCG L++A +F +M EK++++WT M G A G + A R+ D M
Sbjct: 272 AMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITA 331
Query: 313 --------------------------DCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD 344
+ KPN VT S AAC G ++ G +H++
Sbjct: 332 WNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVY- 390
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD- 403
K G++ + + ++D+ + GHLE+A + + D +W ++++ +HG
Sbjct: 391 --IKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMHGHG 447
Query: 404 ---VALGEKVGKILLQLQPE-VTFVDVACT 429
+ L K+ + +++P VTF ++ C
Sbjct: 448 RAAIDLFSKMQET--KVKPNAVTFTNLLCA 475
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 14/216 (6%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P++++ +F ++ T L +CA+ L + LG IHV++ K+G N
Sbjct: 345 PKEALAIFRELQLNKNTKPNEVTLASTLAACAQ---LGAMDLGGWIHVYIKKQGIKLNFH 401
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
+ T+LI Y+ + +VF + R W+AMI G A+ LF
Sbjct: 402 ITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRA-----AIDLFSK 456
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMY 264
M + VKP T +L S GL++ G M + +P + + +VD+
Sbjct: 457 M--QETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHY--ACMVDIL 512
Query: 265 SKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHG 299
+ GCL+ A+ + +M + W A+ I+G
Sbjct: 513 GRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYG 548
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/413 (35%), Positives = 230/413 (55%), Gaps = 28/413 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF FD ++ +N LI Q DS VF V + ++ T + + +C
Sbjct: 162 VFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESK 221
Query: 121 SLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+L LGR IH ++ K + V + LI+ Y + +K+FD++P +++ WN
Sbjct: 222 NLK---LGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWN 278
Query: 180 AMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
++I GYC + N ++ L R+M +S +KP T+ VLS +Q+G G
Sbjct: 279 SLICGYCQIG------SLNEVIELLREM--HLSNLKPDRFTVSGVLSACAQMGAFNLGNW 330
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VH + EK DVFIGTAL+DMY+KCG + A +F +M E+NV TW A+ +G A H
Sbjct: 331 VHRFAEKKGIW---DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASH 387
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ AI L MR+ G +P+++TF ++ AC H+GLVE G FD M + + P ++H
Sbjct: 388 GQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEH 447
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C+VDLLGRAG L+EA I + ++P+ ++W +LLSAC++HG++ +GE +++L
Sbjct: 448 YGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLN 507
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A +V L+N+YASA+R+ V++VR+ M K + G S+++
Sbjct: 508 --------AMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIE 552
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/439 (24%), Positives = 200/439 (45%), Gaps = 51/439 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
++ T +KQIHA+ I ++L + + ++I + + +T+ VF P+
Sbjct: 13 IETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQ----VFNQTQEPD 68
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
F++N +IR P ++ ++ + + D +TY F +CA ++ G+
Sbjct: 69 GFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEK---GK 125
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H + + G+ + + ++L++FY +I + ++VFD+ + WNA+I GY Q
Sbjct: 126 EVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQG 185
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
++ +F++M V+V V+P + TM+ ++ + L+ G +HGYM K +
Sbjct: 186 -----MVLDSFGVFKEM-VEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVL 239
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E V + AL+++Y KCG LD A +F + EKN + W ++ G G NE I LL
Sbjct: 240 REG-VKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLR 298
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGV--------------- 352
M +KP+ T + + +AC G G +H F K W V
Sbjct: 299 EMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGF 358
Query: 353 ------------EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAILWRSLLSA 397
E ++ ++ I+ G E A + +PD+I + ++L A
Sbjct: 359 IGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHA 418
Query: 398 CNVHGDVALGEKVGKILLQ 416
C G V G++ ++LQ
Sbjct: 419 CAHSGLVENGKQYFDLMLQ 437
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 157/472 (33%), Positives = 241/472 (51%), Gaps = 41/472 (8%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
L RCF + +IT+ + + A L++N + L Q+Y H
Sbjct: 6 LTWRRCFCSVPQHSITSGNDPVTVIATLLSNTTR----IRDLNQIY------------AH 49
Query: 64 FVFTHF--DPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+ T F P F +N +IR PQ+++ ++ + G+L D +T L + +
Sbjct: 50 ILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLP-DRYTLPIVLKAVS 108
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ ++ LG+Q+H + K G N + I+ Y D S KVFD+ +
Sbjct: 109 QSFAIQ---LGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGS 165
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNA+I+G SQ A D A+V+F DM G +P TMV V+S +G L
Sbjct: 166 WNALISG-LSQGGLAMD----AIVVFVDM--KRHGFEPDGITMVSVMSACGSIGDLYLAL 218
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+H Y+ + + + +L+DMY KCG +D A +F+ M ++NV +WT+M G A+
Sbjct: 219 QLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAM 278
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG EA+ MR+ GVKPN VTF + +AC H G V+EG FD MK+ +G+ P ++
Sbjct: 279 HGHAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQ 338
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C+VDLLGRAG ++A + +P+KP++++W L+ AC HG+V + E V + L L
Sbjct: 339 HYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQAL 398
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+P V +V LSNIYA+ W +VE +R MK R+ P SI
Sbjct: 399 EPWNEGV--------YVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPAYSI 442
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 233/446 (52%), Gaps = 49/446 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF N+ +N+LI C P +++ VF + + + D+ T + +CA
Sbjct: 209 VFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVML-ESWVEPDEVTLASVISACA--- 264
Query: 121 SLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
SLS + +G+++H V K + N ++++ + YA I + +FD MP+R+
Sbjct: 265 SLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324
Query: 180 AMINGYC-SQSKKAKDCAF-------------------------NALVLFRDMLVDVSGV 213
+M++GY + S KA F AL LF L+ V
Sbjct: 325 SMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF--CLLKRESV 382
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGC 269
PT T +L + L L G H ++ K + E+D+F+G +L+DMY KCGC
Sbjct: 383 CPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ L+F +M E++ ++W AM G A +G GNEA+ L M D G KP+ +T + +A
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSA 502
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C HAG VEEG H F +M +GV P HY+C+VDLLGRAG LEEA + I +P++PD++
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSV 562
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W SLL+AC VH ++ LG+ V + L +++ S +V LSN+YA +W D
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLFEVETS--------NSGPYVLLSNMYAELGKWGDA 614
Query: 450 ESVRKQMKVKRVETEPGSSILQTTTH 475
+VRK M+ + V +PG S ++ H
Sbjct: 615 MNVRKLMRKEGVTKQPGCSWIKIPGH 640
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 135/281 (48%), Gaps = 26/281 (9%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS- 187
R +H V K GF V + LI YA + G+++FD+MP R+ TWN+++ G
Sbjct: 40 RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99
Query: 188 ----------QSKKAKD-CAFNALV------------LFRDMLVDVSGVKPTDTTMVCVL 224
+S +D C +N++V L+ ++ G + T L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S S L + G +H + K+ + +DV+IG+ALVDMYSKCG +++A +F M ++N
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCL--SDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRN 217
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W ++ T +G EA+++ M + V+P+ VT S+ +AC ++ G +
Sbjct: 218 VVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHA 277
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ + I + VD+ + ++EA +PI+
Sbjct: 278 RVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 169/363 (46%), Gaps = 54/363 (14%)
Query: 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
RC ++++ FA +G + +++T+ L +C+ L+ + G QIH + K +
Sbjct: 132 RC---EEALYYFAMMHKEGFV-LNEYTFASGLSACS---GLNDMNRGVQIHSLIAKSPCL 184
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+V + + L+ Y+ +++ ++VFD+M R+ +WN++I Y + A AL
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCY-----EQNGPAVEALK 239
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
+F+ ML S V+P + T+ V+S + L ++ G VH + K + ND+ + A V
Sbjct: 240 VFQVMLE--SWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKL-RNDIILSNAFV 296
Query: 262 DMYSKCGCLDN-------------------------------ALLIFSRMREKNVLTWTA 290
DMY+KC + A L+F++M E+NV++W A
Sbjct: 297 DMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNA 356
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----HAGLVEEGLHLFDN 345
+ G +G+ EA+ L ++ V P TF ++ AC H G+ L
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHG 416
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGD 403
K + G E I + ++D+ + G +EE Y + ++ D + W +++ A N +G+
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGY-LVFRKMMERDCVSWNAMIIGFAQNGYGN 475
Query: 404 VAL 406
AL
Sbjct: 476 EAL 478
>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 565
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 212/360 (58%), Gaps = 19/360 (5%)
Query: 111 FALGSC-ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ LGS + L ++ +G+QIH + K G +++V ++L H Y N + G+ V
Sbjct: 92 YTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRS 151
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP+R+ WN +I G C L L++ ++ +SG +P T V VLS S
Sbjct: 152 MPVRNLVAWNTLIMGNAQNG-----CPETVLYLYK--MMKISGCRPNKITFVTVLSSCSD 204
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L + G +H E + V + ++L+ MYSKCGCL +A FS +++ + W+
Sbjct: 205 LAIRGQGQQIHA--EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 262
Query: 290 AMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+M + HG+G+EAI+L +SM + ++ N V F +L AC H+GL ++GL LFD M
Sbjct: 263 SMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVE 322
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+G +P +KHY+C+VDLLGRAG L++A I +PIKPD ++W++LLSACN+H + + +
Sbjct: 323 KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQ 382
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KV K +L++ P D AC +V L+N++ASA+RW DV VRK M+ K V+ E G S
Sbjct: 383 KVFKEILEIDPN----DSAC----YVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 434
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 11/260 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N + + LI+ Y D+ S +KVFD+MP R TWNAMI G + L L
Sbjct: 24 NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEE-----GLSL 78
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M G P + T+ V S S+ L + G +HGY K Y E D+ + ++L
Sbjct: 79 FREM--HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIK--YGLELDLVVNSSLAH 134
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY + G L + ++ M +N++ W + G A +G + L M+ G +PN +T
Sbjct: 135 MYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKIT 194
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F ++ ++C + +G + K G + S ++ + + G L +A
Sbjct: 195 FVTVLSSCSDLAIRGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSER 253
Query: 383 PIKPDAILWRSLLSACNVHG 402
D ++W S++SA HG
Sbjct: 254 E-DEDEVMWSSMISAYGFHG 272
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S+ S+LG L ++ M K +M N L++ Y + G L +A +F M ++
Sbjct: 1 MSMYSKLGDLPSAVALYERMRKKNFMSSN------ILINGYVRAGDLVSARKVFDEMPDR 54
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+ TW AM G+ E + L M G P+ T S+F+ V G +
Sbjct: 55 KLTTWNAMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIH 114
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
K+G+E + S + + R G L++ I +P++ + + W +L+
Sbjct: 115 -GYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 164
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 160/490 (32%), Positives = 247/490 (50%), Gaps = 48/490 (9%)
Query: 1 MLSLPGH-RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST 59
+ SLPG + A L L+A+ H + + + + L+ LYC A P +
Sbjct: 58 LTSLPGALKSCAALGLRALGASLHALALRSGAFADRFAA----NALLNLYCKLPAPPSHS 113
Query: 60 ----------KIVHFVFTHFDPPNLFLFNTLI-RCTPP----QDSVLVFAYW---VSKGL 101
+ V VF ++ +NTL+ C + LV W
Sbjct: 114 PEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDS 173
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
T +FA G+ R G ++H T+ GF +V V ++LI YA+
Sbjct: 174 FTLSSVLPIFAEGADVR--------RGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTD 225
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
KVFD +P+R + WN+M+ G C+Q+ + AL LFR ML SG+KP T
Sbjct: 226 YSVKVFDNLPVRDAILWNSMLAG-CAQNGSVDE----ALGLFRRMLH--SGIKPMPVTFS 278
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
++ L L G +H Y+ + + + +VFI ++L+DMY KCG + A IF R++
Sbjct: 279 SLIPACGNLASLLLGKQLHAYVIRGGF--DGNVFISSSLIDMYCKCGNVSIARRIFDRIQ 336
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
++++WTAM G A+HG EA+ L D M +KPN +TF ++ AC HAGLV++G
Sbjct: 337 SPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWK 396
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F++M +G+ P ++H++ + D LGR G LEEAYNFI G+ IKP A +W +LL AC VH
Sbjct: 397 YFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVH 456
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ L E+V K + L+P + + LSN Y+S+ RW + +RK M+ K +
Sbjct: 457 KNTVLAEEVAKKIFDLEPR--------SMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGM 508
Query: 462 ETEPGSSILQ 471
+ EP S ++
Sbjct: 509 QKEPACSWIE 518
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 159/481 (33%), Positives = 251/481 (52%), Gaps = 44/481 (9%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIV 62
P +C LL+ A ++ ++ IHA I + L +P + LI ++P S
Sbjct: 17 PLTKCIYLLQFCA-SSKHKLRXIHAFSIRHGVLLNNPDMGKHLI-FTIVSLSAPMSYAYN 74
Query: 63 HF---------VFTHFDPPNLFLFNTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYV 110
F VFT PN+F +NT+ R D+ L F + + D TY
Sbjct: 75 VFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYP 134
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
F L + ++ ++ G IH + GF V V +L+H YA+ D S VF+ M
Sbjct: 135 FLLKAISKSLNVRE---GEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELM 191
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
R ++ING+ + ++ AL LFR+M GV+P T+V +LS S++L
Sbjct: 192 RDRDLVAXISVINGFALNGRPSE-----ALTLFREM--SAEGVEPDGFTVVSLLSASAEL 244
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G LE G VH Y+ K + EN + +L+D+Y+KC + E+N ++WT+
Sbjct: 245 GALELGRRVHVYLLKVG-LRENS-HVTNSLLDLYAKCDAIWEX--------ERNAVSWTS 294
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ G+A++G G EA+ L M G+ P+ +TF + AC H G+++EG F MK ++
Sbjct: 295 LIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEF 354
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G+ P I+HY C+VDLL RAG +++AY +I +P++P+A+ WR+LL AC +HG + LGE
Sbjct: 355 GIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETA 414
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
LL+L+P+ S D+V LSN+Y S RW DV+ +R+ M V+ G S++
Sbjct: 415 RSHLLKLEPK--------HSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLV 466
Query: 471 Q 471
+
Sbjct: 467 E 467
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 225/418 (53%), Gaps = 25/418 (5%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S + VF N+ +NT+I + +++ F + +G+ + T V +
Sbjct: 293 SVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGV----EPTNVSMM 348
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
G+ +L L GR +H + ++ F+V V +LI Y+ K + VF + +
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ TWNAMI GY C AL LF +M +KP T+V V++ + L +
Sbjct: 409 TVVTWNAMILGYAQNG-----CVNEALNLFCEM--QSHDIKPDSFTLVSVITALADLSVT 461
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+HG +T + + +VF+ TAL+D ++KCG + A +F M+E++V+TW AM
Sbjct: 462 RQAKWIHGLAIRT--LMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMID 519
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G +G G EA+ L + M++ VKPN +TF S+ AAC H+GLVEEG++ F++MK +G+E
Sbjct: 520 GYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLE 579
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P + HY +VDLLGRAG L++A+ FI +P+KP + ++L AC +H +V LGEK
Sbjct: 580 PTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADE 639
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L L P+ V L+N+YASA W V VR M+ K ++ PG S+++
Sbjct: 640 LFDLDPD--------DGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVE 689
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 18/343 (5%)
Query: 4 LPGH--RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTK 60
+P H R + + L+ T+ + QI +I N + L+ +LI L+C + ++ +
Sbjct: 38 IPSHVYRHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAAR 97
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLL-TFDDFTYVFALGSCARF 119
+ V D + + + +D+V + ++ DFTY+ L
Sbjct: 98 VFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSG---- 153
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
L GR+IH V GF N+ T +++ YA + I K+F++MP R +WN
Sbjct: 154 -ENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWN 212
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ GY + A ++ ++ +G KP T+V VL + L L G +
Sbjct: 213 TVVAGYAQNGFARR--AVQVVLQMQE-----AGQKPDSITLVSVLPAVADLKALRIGRSI 265
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HGY + + E V + TA++D Y KCG + +A L+F M +NV++W M G A +G
Sbjct: 266 HGYAFRAGF--EYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG 323
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+ EA M D GV+P V+ AC + G +E G ++
Sbjct: 324 ESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYV 366
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 254/497 (51%), Gaps = 58/497 (11%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S IKQ+HA +I N L + + +LI++ TK P + + VF + PN FL+ +
Sbjct: 56 SQIKQVHAHIIRNGLSQCSYVLTKLIRML-TKVDVPMGSYPL-LVFGQVNYPNPFLWTAM 113
Query: 81 IRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV- 135
IR Q +S + G+ FT+ +C ++ LG+Q+H
Sbjct: 114 IRGYALQGLLSESTNFYTRMRRDGVGPV-SFTFSALFKACGAALNMD---LGKQVHAQTI 169
Query: 136 -------------------TKRGFM------------FNVLVATTLIHFYASNKDISSGK 164
K GF+ +V+ T LI YA D+ S
Sbjct: 170 LIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESAS 229
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD +P + W AM+ GY +Q+ + K+ AL F+ M DV G++ + T+ V+
Sbjct: 230 GLFDDLPSKDMVAWTAMVTGY-AQNGRPKE----ALEYFQKM-QDV-GMETDEVTLAGVI 282
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG ++ + E++ + P +V +G+AL+DMYSKCG D A +F M+E+N
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V ++++M G A+HG+ + A++L M ++PN VTF + +AC HAGLVE+G LF
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ +GV P HY+C+VDLLGRAG LEEA + + +P++P+ +W +LL AC +HG+
Sbjct: 403 KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNP 462
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ + L +L+P +++ LSNIYASA RW +V +RK ++ K +
Sbjct: 463 DIAQIAANELFKLEPNGI--------GNYILLSNIYASAGRWEEVSKLRKVIREKGFKKN 514
Query: 465 PGSSILQTTTHYTLDGF 481
PG S + D F
Sbjct: 515 PGCSWFEGKNGEIHDFF 531
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 206/340 (60%), Gaps = 19/340 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ T++ YA + +K+FD+MP R++ATW +MI G D AL +
Sbjct: 169 NVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQS-----DHCEEALRV 223
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F DM+ SGV P + +V +S +QL +E G VHGY E+ + V + TA+VD
Sbjct: 224 FSDMVA--SGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAV-LATAIVD 280
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG + +A+ +F+ M +N+ +W +M G+A++G +A+ L M+ GV+PN +T
Sbjct: 281 MYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDIT 340
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L +AC H+GLV+EG LF M + +G++P +HY +VDLLGR+GH+ EA +F+ +
Sbjct: 341 FIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSM 400
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P LW +L AC +HG+V LGE+V K L++L+P+ ++ LSNIYA+
Sbjct: 401 PVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQ--------HGSRYILLSNIYAT 452
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSIL---QTTTHYTLD 479
+ RW D+ +VR+ +K ++V G++I+ ++ Y +D
Sbjct: 453 SNRWDDMANVRRILKDRKVPKGTGNAIVGNDSQSSGYEID 492
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MPE +V ++ Y++ G L A +F RM +N TW +M TG+ EA+R+
Sbjct: 165 MPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVF 224
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M GV PN S +AC +E G + + + + IVD+ G+
Sbjct: 225 SDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGK 284
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G + +A +P++ + W S+++ ++G
Sbjct: 285 CGSIRDAVRVFAAMPVR-NIYSWNSMIAGLAMNG 317
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 229/412 (55%), Gaps = 23/412 (5%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
+F +L ++N LI + V +Y + + + + T V L C+ S
Sbjct: 136 IFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCS---S 192
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L G+ +H +VTK F+V V LI Y+ I +VF MPMR+ +W ++
Sbjct: 193 LRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSL 252
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
INGY +C AL F+ M + ++P + T++ V+ + S+L E G +
Sbjct: 253 INGYSDN-----NCPNEALGFFKQM--EAENIRPDEITVLGVVCMCSKLRSFELGEWISQ 305
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y+ K + E+ I AL+DM++KCG ++ A IF M EK +++WT M G+A+HG G
Sbjct: 306 YVVKIGLLKESPA-IANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHG 364
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
A+ M+ G KP+++ F SL +AC HAGLV+EG F +M++ + + P ++HY C
Sbjct: 365 LSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGC 424
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VD+L RAG ++EA+ F+ +PIKPD I+WR+LL AC+ G+++L +V L +L P+
Sbjct: 425 MVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPK- 483
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV-ETEPGSSILQT 472
SED+V LSN++AS W +V VRK+M + V + +PG S ++
Sbjct: 484 -------KSEDYVLLSNLFASNAEWDNVGEVRKEMGDRGVTKQDPGCSFIEA 528
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/421 (28%), Positives = 193/421 (45%), Gaps = 63/421 (14%)
Query: 31 LITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----TP 85
+ITN L +P L ++L+ + + P +T + + D + + +NT+IR
Sbjct: 1 MITNGHLHNPTLASKLVVSFASITL-PGTTSVARRIADQIDGLDTYTWNTIIRGYLEGND 59
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P++++LV+ + KGL D +T VF + +C + G QIH + K GF F V+
Sbjct: 60 PEEAILVYNHVRKKGL-KVDTYTLVFVIKACGL---RPVILEGEQIHGQIFKLGFEFEVI 115
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
+ T L++ Y + +++FD+MP R WNA+I Y +C + + D
Sbjct: 116 IQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAH-----GNCPYKVREVSYD 170
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M+ S VKP T V +LSV S L L G VHGY+ K E DVF+ AL+ +YS
Sbjct: 171 MV--RSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLI--EFDVFVHNALIVVYS 226
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG + +A+ +F M +NV++WT++ G + + NEA+ M ++P+ +T
Sbjct: 227 KCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLG 286
Query: 326 LFAACC----------------------------------HA--GLVEEGLHLFDNMKSK 349
+ C HA G + +FD M+ K
Sbjct: 287 VVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEK 346
Query: 350 WGVEPHIKHYSCIVDLLGRAGH-LEEAYNF--IMGIPIKPDAILWRSLLSACNVHGDVAL 406
I ++ ++ L GH L F + KPD++++ SLLSAC+ G V
Sbjct: 347 -----TIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDE 401
Query: 407 G 407
G
Sbjct: 402 G 402
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 223/411 (54%), Gaps = 26/411 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF D + + ++I R ++ +F S+G++ D + L +CA
Sbjct: 410 VFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVP-DVYAVTSILNACAING 468
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L + G+ +H ++ + N V+ L YA + VF M + +WN
Sbjct: 469 NLKS---GKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNT 525
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY S AL LF +M + KP TT+ C+L + L L+ G +H
Sbjct: 526 MIGGYTKNS-----LPNEALTLFAEMQRES---KPDGTTVACILPACASLAALDKGREIH 577
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY + Y D ++ A+VDMY KCG L A +F + K++++WT M G +HG
Sbjct: 578 GYALRNGY--SEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGY 635
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G+EAI + MR G++P+ V+F S+ AC H+GL++EG +F+ MK + +EP+++HY+
Sbjct: 636 GSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYA 695
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLL R G+L +A+ FI +PIKPDA +W +LL C +H DV L EKV + + +L+PE
Sbjct: 696 CMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPE 755
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
T +V L+NIYA AE+W +V+ +RK++ + ++ PG S ++
Sbjct: 756 NTGY--------YVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIE 798
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 166/339 (48%), Gaps = 18/339 (5%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF +FL+N +I +S+ +F + G+ + +T+ L C
Sbjct: 205 RMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKP-NSYTFSSIL-KC-- 260
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F +++ + GRQ+H + K GF V +LI FY + + +K+FD++ R +W
Sbjct: 261 FAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISW 320
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+MI+GY + + +F MLV GV TMV V + +G L G
Sbjct: 321 NSMISGYVKNGLDDR-----GIEIFIKMLV--FGVDIDLATMVNVFVACANIGTLLLGKV 373
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H Y K + + +V L+DMYSKCG L++A+ +F RM EK V++WT+M TG
Sbjct: 374 LHSYSIKAATL-DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVRE 432
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G + AI+L D M+ GV P+ TS+ AC G ++ G + D ++ +E +
Sbjct: 433 GLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN-NLETNSFV 491
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + D+ + G +++A++ + K D I W +++
Sbjct: 492 SNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGG 529
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 155/393 (39%), Gaps = 53/393 (13%)
Query: 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162
FD Y L CA S+ GR++ + G M + ++ L+ Y D+
Sbjct: 147 NFDLGAYCSILQLCAERKSIRD---GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKE 203
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
G+ VFD++ WN MI+ Y + ++ LF+ ML G+KP T
Sbjct: 204 GRMVFDKLSESKIFLWNLMISEYSGSGNYGE-----SINLFKQML--ELGIKPNSYTFSS 256
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+L + + +E G VHG + K + N V +L+ Y + A +F + +
Sbjct: 257 ILKCFAAVARVEEGRQVHGLICKLGFNSYNTVV--NSLISFYFVGRKVRCAQKLFDELTD 314
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++V++W +M +G +G + I + M GV + T ++F AC + G + G L
Sbjct: 315 RDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVL 374
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA--------------------------- 375
++ ++ + ++D+ + G L A
Sbjct: 375 HSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGL 434
Query: 376 -------YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
++ + + PD S+L+AC ++G++ K GKI+ E +
Sbjct: 435 SDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNL----KSGKIVHDYIRENNLETNSF 490
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
S AL+++YA D V MK K V
Sbjct: 491 VSN---ALTDMYAKCGSMKDAHDVFSHMKKKDV 520
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 121/280 (43%), Gaps = 23/280 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K +H + N L++ + L +Y A S K H VF+H ++ +NT+I
Sbjct: 474 KIVHDYIRENNLETNSFVSNALTDMY----AKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ + P +++ +FA + D T L +CA SL+ L GR+IH + + G
Sbjct: 530 YTKNSLPNEALTLFAEMQRES--KPDGTTVACILPACA---SLAALDKGREIHGYALRNG 584
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ + V ++ Y + + +FD +P + +W MI GY ++ A N
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE--AINT 642
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
R ++G++P + + + +L S GLL+ G + M+K + N
Sbjct: 643 FNQMR-----MTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHY-AC 696
Query: 260 LVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIH 298
+VD+ ++ G L A M K + W A+ G IH
Sbjct: 697 MVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIH 736
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 208/367 (56%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
DD+T+ + +CA L G ++H V K G + V + +I Y + +
Sbjct: 472 DDYTFGSVVKACA---GKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAE 528
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ +++ R++ +WN++I+G+ S+ + NAL F ML GV P + T VL
Sbjct: 529 KIHERLEERTTVSWNSIISGFSSEKQGE-----NALSYFSRMLQ--VGVIPDNFTYATVL 581
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ + L +E G +HG + K +DV+I + +VDMYSKCG + ++ ++F + +++
Sbjct: 582 DICANLATVELGKQIHGQILKL--QLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRD 639
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW+AM A HG G +AI+L + M+ VKPN F S+ AC H G V++GLH F
Sbjct: 640 YVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFR 699
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+S +G++P ++HYSC+VDLLGR+G + EA I +P + D ++WR+LL C + G+V
Sbjct: 700 EMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNV 759
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ EK LLQL P+ S +V LSN+YA A W +V +R MK +++ E
Sbjct: 760 EVAEKAANSLLQLDPQ--------DSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKE 811
Query: 465 PGSSILQ 471
PG S +Q
Sbjct: 812 PGCSWIQ 818
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 146/318 (45%), Gaps = 16/318 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T+ L +C + LG Q+H + GF +V+ T L+ Y++ K +
Sbjct: 169 DYATFAVVLKACT---GIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAF 225
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F +MP R+S W+A+I GY + + L L++ ML + GV + T
Sbjct: 226 NIFCEMPERNSVCWSAVIAGYVRNDRFTE-----GLKLYKVMLDEGMGV--SQATFASAF 278
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L E G +H Y KT + +N +GTA +DMY+KC + +A +F+
Sbjct: 279 RSCAGLSAFELGTQLHAYALKTNFGYDN--IVGTATLDMYAKCDRMVDARKVFNTFPNPT 336
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ A+ G A + EA+ + S++ + + ++ + AC EG+ L
Sbjct: 337 RQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLH- 395
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA--CNVHG 402
+ K G++ +I + I+D+ + G L EA + IK DA+ W ++++A N H
Sbjct: 396 GLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAAHEQNEHV 454
Query: 403 DVALGEKVGKILLQLQPE 420
+ L V + ++P+
Sbjct: 455 EETLALFVSMLRSTMEPD 472
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 157/363 (43%), Gaps = 61/363 (16%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ A SCA LS LG Q+H + K F ++ +V T + YA + +KVF
Sbjct: 273 TFASAFRSCA---GLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVF 329
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM---LVDVSGVKPTDTTMVCVL 224
+ P + + NA+I GY Q D AL +FR + +D + + C
Sbjct: 330 NTFPNPTRQSHNALIVGYARQ-----DQVLEALEIFRSLQKSYLDFDEISLSGALTAC-- 382
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S+ G LE G +HG K + ++ + ++DMY+KCG L A LIF M K+
Sbjct: 383 --SAIKGYLE-GIQLHGLAVKCGL--DFNICVANTILDMYAKCGALMEACLIFDDMEIKD 437
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W A+ + E + L SM ++P+ TF S+ AC + G+ +
Sbjct: 438 AVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHG 497
Query: 345 N-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---------------------------- 375
+KS G++ + S I+D+ + G L EA
Sbjct: 498 RVIKSGMGLDWFVG--SAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQG 555
Query: 376 ------YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV-GKIL-LQLQPEV----TF 423
++ ++ + + PD + ++L C V LG+++ G+IL LQL +V T
Sbjct: 556 ENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTI 615
Query: 424 VDV 426
VD+
Sbjct: 616 VDM 618
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q H +T GF+ V V+ L+ FY +++ VFD+MP R +WN MI GY
Sbjct: 57 GKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAG 116
Query: 188 -----------QSKKAKDC-AFNALV--------------LFRDMLVDVSGVKPTDTTMV 221
S +D ++N+++ +F M + ++ T
Sbjct: 117 VGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKM--RLLEIQHDYATFA 174
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
VL + + G VH + + ++DV GTALVDMYS C LD+A IF M
Sbjct: 175 VVLKACTGIEDYGLGLQVHCLAIQMGF--DSDVVTGTALVDMYSTCKKLDHAFNIFCEMP 232
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
E+N + W+A+ G + + E ++L M D G+ + TF S F +C E G
Sbjct: 233 ERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQ 292
Query: 342 L 342
L
Sbjct: 293 L 293
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP+ DV ++ Y+ G ++ A +F M E++V++W +M + +G ++I +
Sbjct: 99 MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL-FDNMKSKWGVEPHIKHYSCIVDLLG 367
MR ++ + TF + AC G+ + GL L + + G + + + +VD+
Sbjct: 159 TKMRLLEIQHDYATFAVVLKAC--TGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYS 216
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
L+ A+N +P + +++ W ++++ + G K+ K++L
Sbjct: 217 TCKKLDHAFNIFCEMP-ERNSVCWSAVIAGYVRNDRFTEGLKLYKVML 263
>gi|357487485|ref|XP_003614030.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515365|gb|AES96988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 165/480 (34%), Positives = 249/480 (51%), Gaps = 63/480 (13%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCT---KKASPQSTKIVHFVFTHFD 70
L ++ + + + Q+ AQ+ N+L + + +QL+ + K S + HF +
Sbjct: 17 LNSLHSITKLHQLQAQIHLNSLHNDTHILSQLVYFFSLSPFKNLSHARKLVFHFS----N 72
Query: 71 PPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+ +N LIR P +S+ VF G+ + TY F SCA L
Sbjct: 73 NPSPISWNILIRGYASSDSPIESIWVFKKMRENGVKP-NKLTYPFIFKSCAMALVLCE-- 129
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
G+Q+H + K G +V V +I+FY K I +KVFD+M +R+ +WN+++ C
Sbjct: 130 -GKQVHADLVKFGLDSDVYVCNNMINFYGCCKKIVYARKVFDEMCVRTIVSWNSVMTA-C 187
Query: 187 SQSK----------KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
++ K +DCAF +P +T+MV +LSV ++LG L G
Sbjct: 188 VENVWLSDGIGYFFKMRDCAF----------------EPDETSMVLLLSVCAELGYLSLG 231
Query: 237 ACVHGYM-EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
VH + K + V +GTALVDMY K G L A ++F RM ++NV TW+AM G+
Sbjct: 232 RWVHSQLILKGMVL---SVHLGTALVDMYGKSGALGYARVVFERMEKRNVWTWSAMIMGL 288
Query: 296 AIHGKGNEAIRLLDSMRD---CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
A HG EA+ L D M D + PN VT+ + AC HAG+V+EG F +M+ G+
Sbjct: 289 AQHGFAEEALVLFDMMNDKKSNNISPNYVTYLGVLCACSHAGMVDEGFRYFRDMEFVHGI 348
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV----ALGE 408
+P + HY +VD+LGRAGHL EAY FI +P PD I+WR+LLSAC VH DV +G+
Sbjct: 349 KPMMVHYGAMVDVLGRAGHLGEAYRFIQSMPFAPDPIVWRTLLSACTVH-DVCDRTGIGD 407
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KV K LL+++P+ + V ++N+YA W +VR+ M+ ++ G S
Sbjct: 408 KVRKRLLEMEPK--------RGGNLVIVANMYAEVGNWEKAANVRRVMRDGGLKKMAGES 459
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 258/512 (50%), Gaps = 84/512 (16%)
Query: 26 QIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCT 84
QIHA ++ N L S + +LI Y + P + K H +F P++ + N ++R +
Sbjct: 30 QIHAFMVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFEEIPKPDVSICNHVLRGS 87
Query: 85 ----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
P+ +V ++ +G+ + D +T+ F L +C++ S G IH V + GF
Sbjct: 88 AQSLKPEKTVALYTEMEKRGV-SPDRYTFTFVLKACSKLEWRSN---GFAIHGKVVRHGF 143
Query: 141 MFNVLVATTLIHF-------------------------------YASNKDISSGKKVFDQ 169
+ N V LI F YA I ++FD+
Sbjct: 144 LLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDE 203
Query: 170 MPMRSSATWNAMING--YCSQSKKAKD----------------------CAF--NALVLF 203
MP + WN MI G C + A++ C + AL +F
Sbjct: 204 MPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIF 263
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT----A 259
++M +G P T++ +LS + LG LE G +H Y+ +T + + +++GT A
Sbjct: 264 KEM--RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS-IYVGTPIWNA 320
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMY+KCG +D A+ +F M+++++ TW + G+A+H ++ + + M+ V PN
Sbjct: 321 LIDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPN 379
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF + AC H+G V+EG F M+ + +EP+IKHY C+VD+LGRAG LEEA+ F+
Sbjct: 380 EVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFV 439
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ I+P+AI+WR+LL AC ++G+V LG+ + LL ++ + S D+V LSNI
Sbjct: 440 ESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--------ESGDYVLLSNI 491
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YAS +W V+ VRK RV+ G S+++
Sbjct: 492 YASTGQWDGVQKVRKMFDDTRVKKPTGISLIE 523
>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
Length = 847
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 29/392 (7%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+ +VL F +GL+ D + L + L WL + IH VTK GF V V
Sbjct: 354 EAAVLSFRDMKREGLVGADQHVFCSVLSASG---GLKDGWLSKSIHCCVTKAGFELEVAV 410
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWN-----AMINGYCSQSKKAKDCAFNALV 201
LI YA + D+ S +V P WN +MI+GY DC ALV
Sbjct: 411 RNALIDMYAKSMDVESASRVLKIDP----GGWNVVSGTSMIDGYIET-----DCVEEALV 461
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
++ ++ GV+P + T ++ + LLE GA +H + KT + D F+G+ LV
Sbjct: 462 IYVEL--RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI--RDSFVGSTLV 517
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY KCG + ++ +F+ + + + W A+ A HG G EAI+ D M G++PN +
Sbjct: 518 DMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHI 577
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
F SL AC HAGLV+EGL F +MK G+EP +HYSCI+D GRAG L+EAY FI
Sbjct: 578 AFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE 637
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PIKP+A W SLL AC + G LGE + L++L+P T + V+LS IYA
Sbjct: 638 MPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGI--------HVSLSGIYA 689
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S +W DV++VRK M+ R++ PG S + +
Sbjct: 690 SLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 721
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 20/267 (7%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMP 171
L SC R L GR +H + G + +A LI Y+ D++S ++F MP
Sbjct: 177 LQSCGRAGDLRR---GRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMP 233
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
R++ +W +++G SQ+ D + R +GV PT + ++ LG
Sbjct: 234 RRNAVSWTTLVSGL-SQNLMHADALAAFAAMRR------AGVAPTRFALSSAARAAAALG 286
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
F + ++F+ + L DMYSKCG L A +F +M +K+ + WTAM
Sbjct: 287 APLRARSCTASASVGF---DTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 343
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAAC--CHAGLVEEGLHLFDNMKS 348
G A +G A+ M+ G V + F S+ +A G + + +H +
Sbjct: 344 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHC---CVT 400
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEA 375
K G E + + ++D+ ++ +E A
Sbjct: 401 KAGFELEVAVRNALIDMYAKSMDVESA 427
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
F+ L+ MYS C L +AL +F+ M +N ++WT + +G++ + +A+ +MR
Sbjct: 57 FLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRA 116
Query: 315 GVKPNAVTFTSLF-----------AACCHAG 334
GV P + + + F A+ CH+G
Sbjct: 117 GVAPTRLIYETKFHNTLGPKHTLAASHCHSG 147
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 235/444 (52%), Gaps = 23/444 (5%)
Query: 26 QIHAQ-LITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCT 84
Q+HAQ L+ L + L + LY A ++ + VF P++ +N L+ +
Sbjct: 27 QVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQ----VFDGMSFPSMHAYNVLLAAS 82
Query: 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV 144
PP +V + + ++ GL D ++ L +CA L + LG H + G + NV
Sbjct: 83 PPGTAVELISRLLASGLRP-DRYSIPAVLRACA---ELRDMLLGAVFHGLALRLGLLANV 138
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
+V+ L+ YA ++ +VFD+MP R + WN M+ GY + + L LFR
Sbjct: 139 VVSGALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYARAGRSEE-----TLELFR 193
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
++ + + VL+V + G L G +HG M + F ++D+ +G ALVDMY
Sbjct: 194 KAQIESVDMARDLRAVPNVLNVCANEGQLMKGREIHGRMVRCFAF-DSDIAVGNALVDMY 252
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
+KCG +D A +F+ M+ +NV++W+ + + +HG G EA+R+ + M GVKPN +TF
Sbjct: 253 AKCGQVDGAQAVFASMKVRNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFI 312
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
S+ ++C H+GLV +G +F++M VEP HY+C+VDLLGRAG +EEA I +P+
Sbjct: 313 SILSSCSHSGLVSDGRRIFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPM 372
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+P A LW +LLSAC H +V +GE L +L+ + ++V L IY +
Sbjct: 373 EPGASLWGALLSACATHNNVDVGEVAAYKLFELEEG--------NASNYVTLCGIYDAIG 424
Query: 445 RWPDVESVRKQMKVKRVETEPGSS 468
R V +R +M+ + PG S
Sbjct: 425 RSDSVSGIRSRMRELGMVKTPGCS 448
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 144/335 (42%), Gaps = 40/335 (11%)
Query: 118 RFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
R C+ S L G Q+H G + N + T + Y+ + ++VFD M S
Sbjct: 14 RRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVFDGMSFPSMH 73
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+N ++ A A+ L +L SG++P ++ VL ++L + G
Sbjct: 74 AYNVLL---------AASPPGTAVELISRLL--ASGLRPDRYSIPAVLRACAELRDMLLG 122
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
A H +V + AL+DMY+K G L +A +F M E++ + W M TG A
Sbjct: 123 AVFH--GLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPERDAVVWNCMVTGYA 180
Query: 297 IHGKGNEAIRL--------LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
G+ E + L +D RD PN + C + G + +G + M
Sbjct: 181 RAGRSEETLELFRKAQIESVDMARDLRAVPNVLNV------CANEGQLMKGREIHGRMVR 234
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ + I + +VD+ + G ++ A + ++ + + W +L+S VHG +G+
Sbjct: 235 CFAFDSDIAVGNALVDMYAKCGQVDGAQAVFASMKVR-NVMSWSTLISCYGVHG---MGK 290
Query: 409 KVGKILLQL-----QPE-VTFVDV--ACTSEDFVA 435
+ +I ++ +P +TF+ + +C+ V+
Sbjct: 291 EALRIYEEMVSRGVKPNCITFISILSSCSHSGLVS 325
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 218/383 (56%), Gaps = 22/383 (5%)
Query: 89 SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT 148
SV +F +G+ + D FT L +CA C+ L G+ +H ++ + ++ V+
Sbjct: 336 SVRLFHEMEKEGI-SPDIFTITTILHACA--CT-GLLENGKDVHNYIKENKMQSDLFVSN 391
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
L+ YA + VF +M ++ +WN MI GY S + AL LF +M
Sbjct: 392 ALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE-----ALNLFVEMQY 446
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
+ KP TM C+L + L LE G +HG++ + + D + ALVDMY KCG
Sbjct: 447 NS---KPNSITMACILPACASLAALERGQEIHGHILRNGFSL--DRHVANALVDMYLKCG 501
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
L A L+F + EK++++WT M G +HG G+EAI + MR+ G++P+ V+F S+
Sbjct: 502 ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILY 561
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC H+GL++EG F+ M++ +EP +HY+CIVDLL RAG+L +AY FI +PI+PDA
Sbjct: 562 ACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDA 621
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
+W +LL C ++ DV L EKV + + +L+PE T +V L+NIYA AE+W +
Sbjct: 622 TIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGY--------YVLLANIYAEAEKWEE 673
Query: 449 VESVRKQMKVKRVETEPGSSILQ 471
V+ +R+++ + + PG S ++
Sbjct: 674 VKKLRERIGRRGLRKNPGCSWIE 696
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 153/299 (51%), Gaps = 17/299 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T V + C+ + L LGR +H + K F + + L+ Y+ + +++S
Sbjct: 250 DLATMVSVVAGCS---NTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAI 306
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VF+ M RS +W +MI GY + + ++ LF +M + G+ P T+ +L
Sbjct: 307 QVFETMGERSVVSWTSMIAGYAREG-----LSDMSVRLFHEM--EKEGISPDIFTITTIL 359
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ GLLE G VH Y+++ ++D+F+ AL+DMY+KCG + +A +FS M+ K+
Sbjct: 360 HACACTGLLENGKDVHNYIKENKM--QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKD 417
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+++W M G + + NEA+ L M+ KPN++T + AC +E G +
Sbjct: 418 IVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMACILPACASLAALERGQEIHG 476
Query: 345 N-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ +++ + ++ H+ + +VD+ + G L A IP K D + W +++ +HG
Sbjct: 477 HILRNGFSLDRHVAN--ALVDMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMHG 532
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 128/240 (53%), Gaps = 11/240 (4%)
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+ + S +K+FD++ R +WN+MI+GY S K L LF ML+ G+
Sbjct: 199 RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEK-----GLDLFEQMLL--LGINTDL 251
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
TMV V++ S G+L G +HGY K + E + + L+DMYSK G L++A+ +F
Sbjct: 252 ATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKE--LTLNNCLLDMYSKSGNLNSAIQVF 309
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M E++V++WT+M G A G + ++RL M G+ P+ T T++ AC GL+E
Sbjct: 310 ETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLE 369
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G + + +K ++ + + ++D+ + G + +A++ + +K D + W +++
Sbjct: 370 NGKDVHNYIKEN-KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGG 427
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T VL + + L ++ G +H ++ E D +G+ LV MY CG L IF
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDV--EVDGVLGSKLVFMYVTCGDLREGRRIFD 160
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK--------------PNAVTFT 324
++ + V W + G A G E++ L MR+ G++ + +++
Sbjct: 161 KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWN 220
Query: 325 SLFAACCHAGLVEEGLHLFDNM 346
S+ + GL E+GL LF+ M
Sbjct: 221 SMISGYVSNGLSEKGLDLFEQM 242
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 170/554 (30%), Positives = 264/554 (47%), Gaps = 113/554 (20%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFD 70
L L T +HIK++HAQ+I L + A +LI + + + VF
Sbjct: 27 LQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAF----SLCHQMNLAVNVFNQIQ 82
Query: 71 PPNLFLFNTLIRC-TPPQDSVLVFAYW--VSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PN+ L+NTLIR S+ FA + + K L D+FTY F L +C L T+
Sbjct: 83 DPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTV-- 140
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYAS------------------------------- 156
+ IH HV K GF ++ V +LI Y+
Sbjct: 141 -QMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGL 199
Query: 157 --NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN---------------- 198
D+ +K+FD+M R + +WN +++GY + ++ AFN
Sbjct: 200 VKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQ--AFNLFEKMPERNVVSWSTM 257
Query: 199 ------------ALVLFRDM--------LVDVSG---------------------VKPTD 217
A +LF M + +SG +KP D
Sbjct: 258 VSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDD 317
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T++ +L+ ++ GLL G VH ++K + V + ALVDMY+KCG +D AL IF
Sbjct: 318 GTLISILAACAESGLLVLGKKVHASIKKIRI--KCSVNVSNALVDMYAKCGRVDKALSIF 375
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
+ M +++++W M G+A+HG G +AI+L M+ G KP+ VT ++ AC HAG V+
Sbjct: 376 NEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVD 435
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+GL F++M+ G+ PHI+HY C++DLLGR G LEEA+ + +P++P+ ++W +LL A
Sbjct: 436 QGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGA 495
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C VH V L EKV L+ L+ ++ LSNI+A+A W V ++R QMK
Sbjct: 496 CRVHNAVPLAEKVLDRLITLE--------QSDPGNYSMLSNIFAAAGDWNSVANMRLQMK 547
Query: 458 VKRVETEPGSSILQ 471
V+ G+S ++
Sbjct: 548 STGVQKPSGASSIE 561
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/414 (34%), Positives = 223/414 (53%), Gaps = 44/414 (10%)
Query: 89 SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW-LGRQIHVHVTKRGFMFNVLVA 147
++ VF V+ G+ D+ ALG+C S + G++IH + G +V V+
Sbjct: 96 AIAVFGDMVADGVFP-DNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVS 154
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--------- 198
T LI Y ++ ++VFD MP RS+ TWNAM++ Y K D A+
Sbjct: 155 TELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKV--DTAYELFLAMPRRD 212
Query: 199 -------------------ALVLFRDMLVDVS-GVKPTDTTMVCVLSVSSQLGLLEFGAC 238
AL LFR M+ S V P TM +L + G LE G
Sbjct: 213 VVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIW 272
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAI 297
VH Y+E+ +D ++ L+DMY KCG +DNAL +F + R++++ +WT + G+A+
Sbjct: 273 VHAYIERNRM--NDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAM 330
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG+ +A+R+ D M+D G+ P+ VT + AC H GLV+EGL F +M++K+ + P I+
Sbjct: 331 HGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIE 390
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C++DLLGR G L+EAY+ I +P+ P+ ++W + LSAC VHG++ LG+ + L +L
Sbjct: 391 HYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRL 450
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P+ + V LS++YA A+ W + R++M +V+ PG S ++
Sbjct: 451 DPDDPW--------GRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIE 496
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 129/312 (41%), Gaps = 51/312 (16%)
Query: 131 IHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH + K G + + T L+ YA+ +++FD+MP + AM + +
Sbjct: 32 IHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASG 91
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG----LLEFGACVHGYMEK 245
+ A+ A+ +F DM+ D GV P + + L G G +H +
Sbjct: 92 QAAQ-----AIAVFGDMVAD--GVFPDNVALAVALGACHGAGSWTARRNPGKKIHALIVT 144
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ P DVF+ T L+ +Y +CG L + +F M ++ +TW AM A HGK + A
Sbjct: 145 SGIEP--DVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 202
Query: 306 RLLDSM--RD--------------------------------CGVKPNAVTFTSLFAACC 331
L +M RD C V PN T +++ AC
Sbjct: 203 ELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 262
Query: 332 HAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
AG +E G+ + + +++ + ++ C++D+ + G ++ A P K D
Sbjct: 263 GAGCLETGIWVHAYIERNRMNDDGYLDR--CLIDMYCKCGSIDNALQVFEKAPRKRDLFS 320
Query: 391 WRSLLSACNVHG 402
W +++ +HG
Sbjct: 321 WTTVICGLAMHG 332
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 259/494 (52%), Gaps = 56/494 (11%)
Query: 13 LKLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L+ + ++ IK + ++ L+ S L +Q+I+ T KA+ Q I F+ T
Sbjct: 22 LQFLSFSSFLQIKSLSPSAASDPLRCSSSFLISQVIKYATTHKATQQ---IRSFIITSGL 78
Query: 71 PPN-----LFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
N + L NTL+ C P + F + ++D F Y F L SCA L +
Sbjct: 79 LLNATANFILLCNTLLHCYPLYQPLRQFP----RIPPSYDTFAYSFLLHSCA---DLELI 131
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
G Q+H K GF +V V T ++ YA++ + KVFD+MP RSS TWN +I G
Sbjct: 132 GPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLDAMKVFDEMPDRSSVTWNVLITGL 191
Query: 186 C--SQSKKAKDC----------AFNALV--------------LFRDMLVDVSGVKPTDTT 219
+ K+A+D ++ A++ LF M+ G++P + T
Sbjct: 192 VKFGELKRARDVFDQMPMRTVVSWTAIIDGYTRLNRHEEAAGLFWRMVAHF-GMEPNEVT 250
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
++ + S LG L+ VH Y EK + +DV I +L+D Y+KCGC+++A +F
Sbjct: 251 LLTIFPAISNLGALKLCQSVHAYAEKKGF-KVSDVRIANSLIDCYAKCGCINSASKVFEE 309
Query: 280 MRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M KN+++WT++ +G +HG G EA+ + M G +PN VTF S+ +AC H GLVE
Sbjct: 310 MSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEKEGHEPNRVTFLSIVSACSHGGLVE 369
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK-PDAILWRSLLS 396
EGL F+ M +++ ++P I HY ++D+LGRAG +EEA + IP + ++WR+LL
Sbjct: 370 EGLEFFEKMVAEYQIKPDIMHYGSLIDMLGRAGRIEEAEKIALEIPKEIASVVIWRTLLG 429
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC+ HG+V++ E+V + +L ++ D+V +SNI+A+A ++ D E R+ M
Sbjct: 430 ACSFHGNVSMAERVTQRILNME--------GAYGGDYVLMSNIFAAAGKYGDAERWRRLM 481
Query: 457 KVKRVETEPGSSIL 470
+ PG S++
Sbjct: 482 DSSKFSKIPGQSLV 495
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 241/465 (51%), Gaps = 29/465 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T ++K+ HAQ++ + P + A+LI Y + K VF + P+
Sbjct: 27 LNLCKTTDNVKKAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARK----VFDNLSEPD 82
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+F N +I+ P +++ V +G+ T + +TY F L +C + GR
Sbjct: 83 VFCCNVVIKVYANADPFGEALKVHDAMRWRGI-TPNYYTYPFVLKACGAEGASKK---GR 138
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH H K G ++ V L+ FYA +D+ +KVFD++P R +WN+M++GY
Sbjct: 139 VIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNG 198
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+A++LF DML D S P T V VL +Q + G +H Y+ KT
Sbjct: 199 Y-----VDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKT--R 251
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
D +GT L+ +YS CG + A IF R+ +++V+ W+A+ HG EA+ L
Sbjct: 252 MGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEALALFR 311
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+ G++P+ V F L +AC HAGL+E+G HLF+ M++ +GV HY+CIVDLLGRA
Sbjct: 312 QLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMET-YGVAKSEAHYACIVDLLGRA 370
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G LE+A FI +PI+P ++ +LL AC +H ++ L E + L L P+
Sbjct: 371 GDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNMELAELAAEKLFVLDPD--------N 422
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+ +V L+ +Y AERW D VRK +K K ++ G S ++ +
Sbjct: 423 AGRYVILAQMYEDAERWLDAARVRKVVKDKEIKKPIGYSSVELES 467
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 193/346 (55%), Gaps = 18/346 (5%)
Query: 127 LGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
GR IH + G + +V + ++L+ Y +KVFD+MP R+ TW A+I GY
Sbjct: 222 FGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGY 281
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
C + +F +ML S V P + T+ VLS + +G L G VH Y+ K
Sbjct: 282 VQGR-----CFEKGMFVFEEMLK--SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIK 334
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
E + +GT L+D Y+KCGCL+ A+L+F R+REKNV TWTAM G A HG A+
Sbjct: 335 N--SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAV 392
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L +M V PN VTF + +AC H GLVEEG LF +MK ++ +EP HY+C+VDL
Sbjct: 393 DLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDL 452
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
GR G LEEA I +P++P +W +L +C +H D LG+ +++LQP
Sbjct: 453 FGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPS----- 507
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S + L+N+Y+ ++ W DV VRKQMK ++V PG S ++
Sbjct: 508 ---HSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIE 550
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 138/280 (49%), Gaps = 24/280 (8%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
Q H H+ K GF ++ V +LI Y++ G +VFD + +W AMI+G+
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRN- 182
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
D + A+ F +M SGV + T+V VL + + + FG +HG FY+
Sbjct: 183 ----DSSLEAMTYFVEM--KRSGVAANEMTVVSVLKATRKAEDVRFGRSIHG-----FYL 231
Query: 250 PEN----DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE-A 304
DVFIG++LVDMY KCGC D+A +F M +NV+TWTA+ G + G+ E
Sbjct: 232 EAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGY-VQGRCFEKG 290
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCI 362
+ + + M V PN T +S+ +AC H G + G +H + K +E + + +
Sbjct: 291 MFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY---VIKNSIEINTTVGTTL 347
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+D + G LEEA + + + W ++++ HG
Sbjct: 348 IDFYAKCGCLEEAI-LVFERLREKNVYTWTAMINGFAAHG 386
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 98 SKGLLTFDDF----------TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
KG+ F++ T L +CA + L GR++H +V K N V
Sbjct: 288 EKGMFVFEEMLKSDVAPNEKTLSSVLSACAH---VGALHRGRRVHCYVIKNSIEINTTVG 344
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
TTLI FYA + VF+++ ++ TW AMING+ A A A+ LF ML
Sbjct: 345 TTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFA-----AHGYAIGAVDLFHTML 399
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDMYSK 266
S V P + T + VLS + GL+E G + M++ F + P+ D + +VD++ +
Sbjct: 400 --SSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHY--ACMVDLFGR 455
Query: 267 CGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
G L+ A + RM E W A+ IH
Sbjct: 456 KGLLEEAKALIERMPMEPTNAVWGALFGSCLIH 488
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 210/370 (56%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V L +CA+ S+ LGRQ+H + GF N+ + LI Y+ ++ +
Sbjct: 234 DESTMVTVLSACAQSGSIE---LGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETAC 290
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F + + +WN +I GY + + AL+LF+DML SG KP D TM+ +L
Sbjct: 291 GLFQGLSNKDVISWNTLIGGYTHMNLYKE-----ALLLFQDMLR--SGEKPNDVTMLSIL 343
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F M ++
Sbjct: 344 SACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRS 403
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ N A + MR G++P+ +TF L +AC H+G+++ G H+F
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 463
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DL G +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 464 SMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNV 523
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE +V LSNIYA+AERW +V R + K ++
Sbjct: 524 ELGESYAQNLIKIEPE--------NPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKV 575
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 576 PGCSSIEIDS 585
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 217/512 (42%), Gaps = 92/512 (17%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T ++ IHAQ+I L + + C VF P L
Sbjct: 9 LHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXL 68
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
++NT+ R + P ++ ++ VS GLL + +T+ F L SCA+ + G+Q
Sbjct: 69 LIWNTMFRGHALSSDPVSALKLYVCMVSLGLLP-NSYTFPFLLKSCAKSXAFKE---GQQ 124
Query: 131 IHVHVTKRGFMFNVLVATTLIHFY-------------------------------ASNKD 159
+H V K GF ++ + T+LI Y AS
Sbjct: 125 LHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGX 184
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
I S K+FD++P++ +WNA I+GY + AL LF+ M+ + V+P ++T
Sbjct: 185 IESAHKMFDEIPVKDVVSWNAXISGYAETGNYKE-----ALELFKKMM--KTNVRPDEST 237
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV VLS +Q G +E G VH ++ + ++ I AL+D+YSKCG L+ A +F
Sbjct: 238 MVTVLSACAQSGSIELGRQVHSWINDHGF--GXNLKIVNALIDLYSKCGELETACGLFQG 295
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ K+V++W + G EA+ L M G KPN VT S+ +AC H G ++ G
Sbjct: 296 LSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIG 355
Query: 340 --LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN---------------FIMGI 382
+H++ + + K GV + ++D+ + G +E A I G
Sbjct: 356 RWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414
Query: 383 P-------------------IKPDAILWRSLLSACNVHGDVALGEKV-------GKILLQ 416
I+PD I + LLSAC+ G + LG + K++ +
Sbjct: 415 AMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPK 474
Query: 417 LQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
L+ +D+ S F + + E PD
Sbjct: 475 LEHYGCMIDLXGHSGLFKEAEKMINTMEMEPD 506
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 243/501 (48%), Gaps = 76/501 (15%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ I+Q HA ++ L A + + P++ H + PN F N++I
Sbjct: 53 TEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVI 112
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + P+ ++ VF + G + D +++ F L +CA FC GRQIH K
Sbjct: 113 RAYANSSTPEVALTVFREML-LGPVFPDKYSFTFVLKACAAFCGFEE---GRQIHGLFIK 168
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA----------------- 180
G + +V V TL++ Y + +KV D+MP+R + +WN+
Sbjct: 169 SGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARAL 228
Query: 181 --------------MINGYCSQS--KKAKDC----------AFNALV------------- 201
MI+GY + K+AK+ ++NA+V
Sbjct: 229 FDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVL 288
Query: 202 -LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+F ML D S KP T+V VLS + LG L G VH Y++K + E + F+ TAL
Sbjct: 289 EVFNKMLDD-STEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDK--HGIEIEGFLATAL 345
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMYSKCG +D AL +F +++V TW ++ + +++HG G +A+ + M G KPN
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF + +AC H G++++ LF+ M S + VEP I+HY C+VDLLGR G +EEA +
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVN 465
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
IP +IL SLL AC G + E++ LL+L S + +SN+Y
Sbjct: 466 EIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR--------DSSGYAQMSNLY 517
Query: 441 ASAERWPDVESVRKQMKVKRV 461
AS RW V R+ M+ +RV
Sbjct: 518 ASDGRWEKVIDGRRNMRAERV 538
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 241/455 (52%), Gaps = 28/455 (6%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T + + Q+HA + +L P + L + + P + H + T P LF +NT
Sbjct: 12 TLTQLLQLHALFLKTSLDHHPFFISQFLLQSSTISLPFAASFFHSLPTL---PPLFAWNT 68
Query: 80 LIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
LIR TP L + L D+FTY F L +CAR SL LG +H
Sbjct: 69 LIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLP---LGGTLHSLTL 125
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K GF + V L++ YA + S + VFD+M R +W+++I Y A +
Sbjct: 126 KTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYV-----ASNSP 180
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
+A +FR+M + +P T+V +LS ++ L G +H Y+ E DV +
Sbjct: 181 LDAFYVFREM--GMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGI--EMDVAL 236
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
GTAL +MY+KCG +D ALL+F+ M +KN+ + T M + +A HG+ + I L M D G+
Sbjct: 237 GTALFEMYAKCGEIDKALLVFNSMGDKNLQSCTIMISALADHGREKDVISLFTQMEDGGL 296
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
+ ++++F + +AC H GLV+EG FD M +G++P ++HY C+VDLLGRAG ++EAY
Sbjct: 297 RLDSLSFAVILSACSHMGLVDEGKMYFDRMVRVYGIKPSVEHYGCMVDLLGRAGFIQEAY 356
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+ I G+P++P+ ++ RS L AC HG V + L +L+ E+ ++V
Sbjct: 357 DIIKGMPMEPNDVILRSFLGACRNHGWVPSLDD--DFLSELESEL--------GANYVLT 406
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+N++++ W D +R MK+K ++ PG S ++
Sbjct: 407 ANVFSTCASWKDANDLRVAMKLKGLKKVPGCSWVE 441
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 229/417 (54%), Gaps = 27/417 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVL-----VFAYWVSKGLLTFDDFTYVFALGSCARF 119
+F P F +N+LIR P + V+ + G + FT FAL +CA
Sbjct: 80 LFDQIPDPTAFCYNSLIRALPAAGAAPAPALAVYRLMLRAGSPRPNTFTLAFALKACA-- 137
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSATW 178
++ GRQ+H ++G + V T L++ YA + ++ + VFD M P +S W
Sbjct: 138 -AVPAPGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAW 196
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
+AMINGY AL LFR+M GV+P + TMV V+S ++ G L+ G
Sbjct: 197 SAMINGYSRVG-----MVTEALGLFREM--QAVGVEPDEVTMVGVISACAKAGALDLGKW 249
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VH Y+++ D+ + TAL+DMY+KCG ++ A +F M EK+ W+AM G AIH
Sbjct: 250 VHAYIDRKGITV--DLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIH 307
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G +A+ L M + V+PN VTF + +AC H+GLV++G + M++ G++P +++
Sbjct: 308 GLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDGRRYWSIMQN-LGIKPSMEN 366
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C++DLL R+G L++AY+F++ +PI P++I+WR+LL AC + + E K LL+L+
Sbjct: 367 YGCMIDLLCRSGLLDDAYSFVIDMPISPNSIIWRTLLVACKSSNRIDIAESASKRLLELE 426
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
P E++V LSN+ AS +W V +RK+MK V G S ++ +
Sbjct: 427 PH--------NPENYVLLSNLCASNSQWDRVSYLRKKMKDSNVTAVAGCSSIEINGY 475
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/463 (32%), Positives = 252/463 (54%), Gaps = 53/463 (11%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKG 100
LI +Y A T ++ +F ++ +N +I +C +D++ VF +
Sbjct: 178 LIDMY----AQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEES 233
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
L D+ T V L +C +L L LG++IH H + F ++ L+ Y +
Sbjct: 234 GLMPDEATVVSTLSACT---ALKRLELGKKIH-HYVRDNVKFTPIIGNALLDMYCKCGCL 289
Query: 161 SSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKD--------------------CAFN 198
S + VF++MP ++ W M++GY C + ++A++ FN
Sbjct: 290 SIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFN 349
Query: 199 ----ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
A+ LFR+M + VKP +V +L+ +Q G +E G +H ++++ +P D
Sbjct: 350 RFDEAVALFREM--QIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDEN-RIP-IDA 405
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+GTAL++MY+KCG ++ AL IF +R K+ +WT++ G+A++GK ++A+ L M+
Sbjct: 406 VVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQA 465
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
GV+P+ +TF + +AC H GLVEEG F++M+ ++ ++P ++HY C+VDLLGRAG L E
Sbjct: 466 GVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRAGLLNE 525
Query: 375 AYNFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
A I IP + AI L+ SLLSAC ++G+V +GE+V K L++ + + S
Sbjct: 526 AEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFE--------SSDSS 577
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
L+NIYA A+RW DV VR++MK V+ PG S ++ +
Sbjct: 578 VHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDS 620
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 211/458 (46%), Gaps = 62/458 (13%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK+ + +H+KQIHAQ+ L + + +CT + + +F + P L
Sbjct: 44 LKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNG-NLNYAEKMFKYIRYPCL 102
Query: 75 FLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
++N +I+ + ++++F+ GL D+FTY F + +S +
Sbjct: 103 LIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWP-DNFTYPFVFKAIGYLGEVSK---AEK 158
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+ VTK G F+ V +LI YA K +FD+MP R +WN MI+GY + +
Sbjct: 159 LRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYV-KCR 217
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF-YM 249
+ +D A N ++ SG+ P + T+V LS + L LE G +H Y+ +
Sbjct: 218 RFED-AINVFCRMQEE----SGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFT 272
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA------------- 296
P IG AL+DMY KCGCL A +F M KNV+ WT M +G A
Sbjct: 273 P----IIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFE 328
Query: 297 -------------IHG-----KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
I+G + +EA+ L M+ VKP+ SL C G +E+
Sbjct: 329 GSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQ 388
Query: 339 G--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
G +H F + +++ ++ + + ++++ + G +E+A G+ +K D W S++
Sbjct: 389 GKWIHEFID-ENRIPIDAVVG--TALIEMYAKCGFIEKALEIFYGLRVK-DTASWTSIIC 444
Query: 397 ACNVHGDVALGEKVGKILLQ--LQP-EVTFVDV--ACT 429
++G + ++ + Q ++P ++TF+ V AC+
Sbjct: 445 GLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACS 482
>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 698
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 29/392 (7%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+ +VL F +GL+ D + L + L WL + IH VTK GF V V
Sbjct: 205 EAAVLSFRDMKREGLVGADQHVFCSVLSASG---GLKDGWLSKSIHCCVTKAGFELEVAV 261
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWN-----AMINGYCSQSKKAKDCAFNALV 201
LI YA + D+ S +V P WN +MI+GY DC ALV
Sbjct: 262 RNALIDMYAKSMDVESASRVLKIDP----GGWNVVSGTSMIDGYIET-----DCVEEALV 312
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
++ ++ GV+P + T ++ + LLE GA +H + KT + D F+G+ LV
Sbjct: 313 IYVEL--RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI--RDSFVGSTLV 368
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY KCG + ++ +F+ + + + W A+ A HG G EAI+ D M G++PN +
Sbjct: 369 DMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHI 428
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
F SL AC HAGLV+EGL F +MK G+EP +HYSCI+D GRAG L+EAY FI
Sbjct: 429 AFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE 488
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PIKP+A W SLL AC + G LGE + L++L+P T + V+LS IYA
Sbjct: 489 MPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGI--------HVSLSGIYA 540
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S +W DV++VRK M+ R++ PG S + +
Sbjct: 541 SLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 572
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 122/267 (45%), Gaps = 19/267 (7%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMP 171
L SC R L GR +H + G + +A LI Y+ D++S ++F MP
Sbjct: 27 LQSCGRAGDLRR---GRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMP 83
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
R++ +W +++G SQ+ D + R +GV PT + ++ LG
Sbjct: 84 RRNAVSWTTLVSGL-SQNLMHADALAAFAAMRR------AGVAPTRFALSSAARAAAALG 136
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
GA +H + + + ++F+ + L DMYSKCG L A +F +M +K+ + WTAM
Sbjct: 137 APLPGAQLHCVGVRLGF--DTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 194
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAAC--CHAGLVEEGLHLFDNMKS 348
G A +G A+ M+ G V + F S+ +A G + + +H +
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHC---CVT 251
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEA 375
K G E + + ++D+ ++ +E A
Sbjct: 252 KAGFELEVAVRNALIDMYAKSMDVESA 278
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 260/499 (52%), Gaps = 70/499 (14%)
Query: 9 CFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---V 65
C A+ LK I H + A L +AL L +++ SP +H+ +
Sbjct: 251 CLAMQALKLI----HARAFRANLHNHALV-------LAKIFRFAAVSPNGC--LHYADRL 297
Query: 66 FTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARF-C 120
F+ PN F +NTLIR + P SV +F + + + D FT+ F L +R
Sbjct: 298 FSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQ-MRRNCVDPDGFTFTFLLKGRSRMRI 356
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK---------------------- 158
L + +IH V K GF F++ V LIH YA+
Sbjct: 357 DLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSG 416
Query: 159 ---------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
++ ++VFD+MP R +W M++GY +Q+K++++ AL LFR+M D
Sbjct: 417 LVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGY-AQAKRSRE----ALELFREMR-D 470
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
V GV+P + MV V+S + LG LE G VH Y+++ + V + AL+DMY+KCGC
Sbjct: 471 V-GVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWM--VSLCNALIDMYAKCGC 527
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
+D A +F+ M K+++TW +M + A HG +A R+ M G++P+ VTF +L A
Sbjct: 528 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTA 587
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
H G V++G LF++M+ +GVE ++HY C+VD+LGRAG LEEAY I + + + +
Sbjct: 588 YTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDV 647
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W +LL+AC ++GDV +GE+V K L++L+P+ ++ L +IY +A R +
Sbjct: 648 VWGALLAACRIYGDVEMGERVLKKLIELKPD--------EGGYYILLRDIYVAAGRRAEA 699
Query: 450 ESVRKQMKVKRVETEPGSS 468
+R+ M V + G S
Sbjct: 700 IELRRAMDVNGAKKTLGCS 718
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 225/412 (54%), Gaps = 19/412 (4%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
H+VF +L +N++I Q + A + G++ V L S A +
Sbjct: 223 HWVFGGMALRDLVTWNSIISANE-QGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQ 281
Query: 123 STLWLG-RQIHVHVTKRGF-MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
LG + +H +V +RG+ + +++ ++ YA I + +KVFD +P R +WN
Sbjct: 282 CGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNT 341
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I GY A A+ ++ DM + G+KP T V VL S LG L+ G +H
Sbjct: 342 LITGYMQNG-----LANEAIRIYNDMH-NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMH 395
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
KT DV++ T L+D+Y+KCG L A+ +F M ++ W A+ G+ +HG
Sbjct: 396 ALSIKTGL--NLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGH 453
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A+ L M+ +KP+ VTF SL AAC HAGLV++G FD M++ +G+ P KHY+
Sbjct: 454 GAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYT 513
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VD+LGRAG L+EA+ FI +PIKPD+ +W +LL AC +HG+V +G+ + L +L PE
Sbjct: 514 CMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPE 573
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V +SN+YA +W V++VR ++ + ++ PG S ++
Sbjct: 574 NVGY--------YVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEV 617
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 15/271 (5%)
Query: 130 QIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
Q+H + G + NV + +L+H Y ++ +VFD+MP R WNAM++G C
Sbjct: 87 QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
++ A +A+ L M+ + GV T+ VL + LG +H Y K +
Sbjct: 147 TRAA-----DAVTLLGRMVGE--GVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVK--H 197
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
++F+ AL+D+Y K G L A +F M ++++TW ++ + GK A+ L
Sbjct: 198 GLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELF 257
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAG--LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
M + GV P+ +T SL +A G L + +H + + W V I + +VD+
Sbjct: 258 HGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRG-WDVGDIIAG-NAMVDMY 315
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ ++ A +P + D + W +L++
Sbjct: 316 AKMSKIDAAQKVFDNLPDR-DVVSWNTLITG 345
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 246/471 (52%), Gaps = 36/471 (7%)
Query: 10 FALLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
FAL A++ P Q H Q+ + P + LI +YC + K+ +
Sbjct: 45 FALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFE---EN 101
Query: 69 FDPPNLFL-FNTLI-------RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
F L + +N L+ +C+ D+VL+F +G+ + T + + +C
Sbjct: 102 FHSRKLTVCYNALVSGYVSNSKCS---DAVLLFRQMNEEGV-PVNSVTLLGLIPACV--- 154
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L LG +H K GF +V V I Y ++ +K+FD+MP++ +WNA
Sbjct: 155 SPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNA 214
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
M++GY A N L L+R+M D++GV P T+V VLS + LG G V
Sbjct: 215 MVSGYAQNG-----LATNVLELYRNM--DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 267
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
M+ + + ++ F+ AL++MY++CG L A +F M E+ +++WTA+ G +HG
Sbjct: 268 FKMQASGFT--SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 325
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G A++L M G++P+ F + +AC HAGL ++GL F MK + +EP +HYS
Sbjct: 326 GEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYS 385
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGRAG L+EA I +PIKPD +W +LL AC +H +V L E + +++L+PE
Sbjct: 386 CMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPE 445
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V LSNIY++A V +R MK K+++ +PG S ++
Sbjct: 446 NIGY--------YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVE 488
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 173/365 (47%), Gaps = 26/365 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ FT+ FAL SCA +LS LG Q H +TK G +F V T LI Y + + +
Sbjct: 39 NAFTFPFALKSCA---ALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNAR 95
Query: 165 KVFDQ--MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
KVF++ + + +NA+++GY S SK C+ +A++LFR M + GV T++
Sbjct: 96 KVFEENFHSRKLTVCYNALVSGYVSNSK----CS-DAVLLFRQM--NEEGVPVNSVTLLG 148
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
++ LE G+ +H K Y ++DV + + MY KCG ++ A +F M
Sbjct: 149 LIPACVSPINLELGSSLHCSTLK--YGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPV 206
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K +++W AM +G A +G + L +M GV P+ VT + ++C + G G +
Sbjct: 207 KGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEV 266
Query: 343 -FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F S + P + + ++++ R G+L +A G+P + + W +++ +H
Sbjct: 267 EFKMQASGFTSNPFLN--NALINMYARCGNLTKAQAVFDGMPER-TLVSWTAIIGGYGMH 323
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G G+I +QL E+ + FV + + + A K MK +
Sbjct: 324 GH-------GEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK-RNY 375
Query: 462 ETEPG 466
+ EPG
Sbjct: 376 QLEPG 380
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 242/465 (52%), Gaps = 34/465 (7%)
Query: 15 LKAITTPSHIKQ---IHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L A + PS +KQ IH ++I + + L+ +Y A S VF
Sbjct: 414 LGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMY----AKCGSLMDARNVFERIS 469
Query: 71 PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
N+ +N +I ++V F + +G+ D T+ L C S L
Sbjct: 470 KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKP-DSSTFTSILNVCK---SPDALE 525
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LG+ + + + GF ++ + L+ + + D+ S +F+ MP R +WN +I G+
Sbjct: 526 LGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFV 585
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ AF+ + ++ SGVKP T +L+ + L G +H + +
Sbjct: 586 QHGEN--QFAFDYFKMMQE-----SGVKPDQITFTGLLNACASPEALTEGRRLHALITEA 638
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ DV +GT L+ MY+KCG +D+A L+F + +KNV +WT+M TG A HG+G EA+
Sbjct: 639 AL--DCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALE 696
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M+ GVKP+ +TF +AC HAGL++EGLH F++MK + +EP ++HY C+VDL
Sbjct: 697 LFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLF 755
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG L EA FI + +KPD+ LW +LL AC VH DV L EKV + L+L P V
Sbjct: 756 GRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGV-- 813
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V LSNIYA+A W +V +RK M + V +PG S ++
Sbjct: 814 ------YVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIE 852
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 200/431 (46%), Gaps = 62/431 (14%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
LS G A+L L ++ +P HI QIH Q Y+ L+QL K +I
Sbjct: 79 LSKAGQLSEAMLVLLSVDSP-HI-QIHRQT----------YSSLLQLCIKHKNLGDGERI 126
Query: 62 VHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTF------------- 104
+ + P++F++N LI +C + +F K + ++
Sbjct: 127 HNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186
Query: 105 -----------------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D +T+V+ L +CA ++ G ++ + G+ ++ V
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDK---GGELFSLILNAGWDTDLFVG 243
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T LI+ + + KVF+ +P R TW +MI G + + C LF+ M
Sbjct: 244 TALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACN-----LFQVM- 297
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ GV+P V +L + LE G VH M++ + ++++GTAL+ MY+KC
Sbjct: 298 -EEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGL--DTEIYVGTALLSMYTKC 354
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G +++AL +F+ ++ +NV++WTAM G A HG+ EA + M + G++PN VTF S+
Sbjct: 355 GSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSIL 414
Query: 328 AACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC +++G + D +K+ + + ++ + ++ + + G L +A N I K
Sbjct: 415 GACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLSMYAKCGSLMDARNVFERIS-KQ 471
Query: 387 DAILWRSLLSA 397
+ + W ++++A
Sbjct: 472 NVVAWNAMITA 482
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 154/298 (51%), Gaps = 20/298 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L C + +L G +IH H+ ++ + LI YA + +S K++F
Sbjct: 106 TYSSLLQLCIKHKNLGD---GERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIF 162
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D+MP + +WN ++ GY + + A L M+ D GVKP T V +L+
Sbjct: 163 DEMPDKDVYSWNLLLGGYVQHRRYEE-----AFRLHEQMVQD--GVKPDKYTFVYMLNAC 215
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ ++ G + + + + D+F+GTAL++M+ KCG +D+AL +F+ + ++++T
Sbjct: 216 ADAKNVDKGGELFSLILNAGW--DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLIT 273
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WT+M TG+A H + +A L M + GV+P+ V F SL AC H +E+G + MK
Sbjct: 274 WTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK 333
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G++ I + ++ + + G +E+A +N + G + + W ++++ HG
Sbjct: 334 -EVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKG----RNVVSWTAMIAGFAQHG 386
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 9/220 (4%)
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
N + ++ KA + LVL VD ++ T +L + + L G +H +
Sbjct: 73 NAFLNRLSKAGQLSEAMLVLLS---VDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNH 129
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
++ + P D+F+ L+ MY+KCG ++A IF M +K+V +W + G H +
Sbjct: 130 IKFSKIQP--DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYE 187
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD-NMKSKWGVEPHIKHYSC 361
EA RL + M GVKP+ TF + AC A V++G LF + + W + + +
Sbjct: 188 EAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVG--TA 245
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
++++ + G +++A +P + D I W S+++ H
Sbjct: 246 LINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITGLARH 284
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 203/337 (60%), Gaps = 19/337 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T+IH YA N ++ ++VF+ M R + +W++M++ Y ++ +++KD AL L+R+M
Sbjct: 141 NTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAY-TKGRRSKD----ALELWREM- 194
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ V P TTMV VLS S +G L GA VH ++E E DV +GTAL+DMY+KC
Sbjct: 195 -RAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGV--ELDVKLGTALIDMYAKC 251
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++N++ +F M K+VLTW++M G+A HG G++A+ L M G++PN VTF +
Sbjct: 252 GDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVL 311
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+C H GLV +G F +M GV P ++HY C+VDLLGR+GH+EEA I +P +PD
Sbjct: 312 ISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPD 371
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++WR+LL AC ++ +V + E+ L L P +V LSNIYA A W
Sbjct: 372 AVIWRALLGACRIYKNVEVAEEAMAKLRVLDPH--------ADGHYVLLSNIYAQANSWE 423
Query: 448 DVESVRKQMKVKRVETEPGSSIL--QTTTHYTLDGFR 482
V +R+ ++ +R++ PG S + Q T H + G R
Sbjct: 424 GVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDR 460
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 56/319 (17%)
Query: 131 IHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+H K GF ++ V T L+ YA + FD+ P R N M+ Y ++
Sbjct: 61 LHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRG 120
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ A+ A +F G++ D ++ + +HGY
Sbjct: 121 EVAE-----ARRVF-------DGMRERD--------------MVSWNTMIHGY------- 147
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ G +D A +F+ M +++ +W++M + + +A+ L
Sbjct: 148 ---------------AVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWR 192
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
MR V P+ T S+ +AC G + G + ++S GVE +K + ++D+ +
Sbjct: 193 EMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESN-GVELDVKLGTALIDMYAKC 251
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVH--GDVALGEKVGKILLQLQP-EVTFVDV 426
G +E + +P+K D + W S++ H G AL + LQP EVTF+ V
Sbjct: 252 GDIENSVRVFHSMPVK-DVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGV 310
Query: 427 --ACTSEDFVALSNIYASA 443
+CT V+ Y S+
Sbjct: 311 LISCTHLGLVSDGKKYFSS 329
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 29/238 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRC-TPPQDSVLVFAYW--VSKGLLTFDDFTYVFALGSCARFCS 121
VF D + F +++++ T + S W + + D T V L +C+
Sbjct: 159 VFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACS---D 215
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
+ L +G ++H V G +V + T LI YA DI + +VF MP++ TW++M
Sbjct: 216 MGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSM 275
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG----- 236
I G + +AL LF ML + G++P + T + VL + LGL+ G
Sbjct: 276 IIGLANHG-----FGHDALSLFSRMLSE--GLQPNEVTFIGVLISCTHLGLVSDGKKYFS 328
Query: 237 --ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAM 291
+ VHG K + +VD+ + G ++ A + M E + + W A+
Sbjct: 329 SMSVVHGVTPKVQHY--------GCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRAL 378
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 251 bits (641), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/362 (36%), Positives = 208/362 (57%), Gaps = 18/362 (4%)
Query: 111 FALGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
F LGS R C+ L +L G+++H + K GF + +V ++L H Y + +S G+K+
Sbjct: 195 FTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKS 254
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP+R+ WN +I G K C L + ++ ++G +P T V VLS S+
Sbjct: 255 MPIRTVVAWNTLIAG-----KAQNGCPEEVLNQYN--MMKMAGFRPDKITFVSVLSACSE 307
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L L G +H + K + + + ++L+ MYS+ GCL++++ F +V+ W+
Sbjct: 308 LATLGQGQQIHAEVIKA--GASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWS 365
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+M HG+G EA+ L M D ++ N VTF SL AC H+GL E+G FD M K
Sbjct: 366 SMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKK 425
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+ ++P I+HY+C+VDLLGRAG LEEA I +P++PD I+W++LL+AC +H + + E+
Sbjct: 426 YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAER 485
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+ + +++L P +D A +V LSNI+ASA W +V +RK M+ + V EPG S
Sbjct: 486 ISEEIIKLDP----LDAA----SYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISW 537
Query: 470 LQ 471
L+
Sbjct: 538 LE 539
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 26/297 (8%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--AL 200
NV+ LI+ Y D+ S +K+FD+M R+ ATWNAMI G FN AL
Sbjct: 127 NVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLT-------QFEFNKQAL 179
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LF++M G P + T+ VL + L L G VH + K + E +G++L
Sbjct: 180 SLFKEMY--GLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGF--ELSSVVGSSL 235
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY K G L + + M + V+ W + G A +G E + + M+ G +P+
Sbjct: 236 AHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDK 295
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF S+ +AC + +G + + K G + S ++ + R+G LE++ +
Sbjct: 296 ITFVSVLSACSELATLGQGQQIHAEV-IKAGASSVLAVVSSLISMYSRSGCLEDSIKAFV 354
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP------EVTFVDV--ACT 429
D +LW S+++A HG GE+ ++ Q++ EVTF+ + AC+
Sbjct: 355 DRE-NFDVVLWSSMIAAYGFHGR---GEEALELFHQMEDLKMEANEVTFLSLLYACS 407
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 33/195 (16%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP +V L++ Y + G L++A +F M E+N+ TW AM G+ +A+ L
Sbjct: 123 MPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 182
Query: 309 DSMRDCGVKPNAVTFTSLFAACC-----------HAGLVEEGL-----------HLFDNM 346
M G P+ T S+ C HA L++ G H++
Sbjct: 183 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 242
Query: 347 KSKWGVEPHIKH--------YSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLL 395
S E IK ++ ++ + G EE YN + +PD I + S+L
Sbjct: 243 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 302
Query: 396 SACNVHGDVALGEKV 410
SAC+ + G+++
Sbjct: 303 SACSELATLGQGQQI 317
>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
Length = 617
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 29/392 (7%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+ +VL F +GL+ D + L + L WL + IH VTK GF V V
Sbjct: 124 EAAVLSFRDMKREGLVGADQHVFCSVLSASG---GLKDGWLSKSIHCCVTKAGFELEVAV 180
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWN-----AMINGYCSQSKKAKDCAFNALV 201
LI YA + D+ S +V P WN +MI+GY DC ALV
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDP----GGWNVVSGTSMIDGYIET-----DCVEEALV 231
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
++ ++ GV+P + T ++ + LLE GA +H + KT + D F+G+ LV
Sbjct: 232 IYVEL--RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLI--RDSFVGSTLV 287
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY KCG + ++ +F+ + + + W A+ A HG G EAI+ D M G++PN +
Sbjct: 288 DMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHI 347
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
F SL AC HAGLV+EGL F +MK G+EP +HYSCI+D GRAG L+EAY FI
Sbjct: 348 AFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISE 407
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PIKP+A W SLL AC + G LGE + L++L+P T + V+LS IYA
Sbjct: 408 MPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGI--------HVSLSGIYA 459
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S +W DV++VRK M+ R++ PG S + +
Sbjct: 460 SLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSN 491
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 132/277 (47%), Gaps = 17/277 (6%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
Q+H + GF + VA+ L Y+ +S +VFDQMP + + W AMI+GY
Sbjct: 62 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGY---- 117
Query: 190 KKAKDCAFNALVL-FRDMLVDVSGVKPTDTTMVC-VLSVSSQLGLLEFGACVHGYMEKTF 247
AK+ + A VL FRDM + G+ D + C VLS S L +H + K
Sbjct: 118 --AKNGSLEAAVLSFRDMKRE--GLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAG 173
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFS-RMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ E +V + AL+DMY+K +++A + NV++ T+M G EA+
Sbjct: 174 F--ELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALV 231
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDL 365
+ +R GV+PN TF+S+ C L+E+G L +K+ + + S +VD+
Sbjct: 232 IYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG--STLVDM 289
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G+ G + + I + D I W ++++ HG
Sbjct: 290 YGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFAQHG 325
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 261/495 (52%), Gaps = 45/495 (9%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
+ +LL K +T S +KQI + L +T LK P A++I L+ A S +F
Sbjct: 12 KTISLLDQKGLTI-SQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARS-SLFYAERLF 69
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFD----DFTYVFALGSCARFCSL 122
+ F++NT+++ ++ V A+ + K +L + +FT+ F + +C +
Sbjct: 70 LCLQNKSTFIWNTMMQAFVEKNEA-VRAFSLYKHMLESNYLPNNFTFSFVIRAC---IDV 125
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
L +G H V K G+ V LIH YA+ + + +FD R TW +I
Sbjct: 126 FNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLI 185
Query: 183 NGYCSQSK------------KAKDCAFNALV-------LFRDML-----VDVSGVKPTDT 218
+GY + + + ++ AL+ F++ L + VSG +
Sbjct: 186 SGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRA 245
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
++V L+ + LG L+ G +H Y+++ + D +GTAL+DMY+KCGC++ A +F
Sbjct: 246 SIVGALTACAFLGALDQGRWIHAYVKR--HHMSLDRMLGTALIDMYAKCGCIEMACSVFD 303
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M +++V +T + +G+A H K AI L + M+D GV PN VTF + AC G+V+E
Sbjct: 304 EMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDE 363
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
GL +F++M +++ +EP I+HY C+VDLLGRAG +EEA + +P++PD+ +LL AC
Sbjct: 364 GLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDAC 423
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
VHGDV LGE++ L+Q + V V LSN+YASA++W D +RK+M+
Sbjct: 424 RVHGDVQLGEEMVDSLVQRCLDHGGV--------HVLLSNMYASADKWEDASKIRKKMED 475
Query: 459 KRVETEPGSSILQTT 473
K + PG S ++
Sbjct: 476 KNIRKLPGCSSIEVN 490
>gi|449527613|ref|XP_004170804.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like, partial [Cucumis sativus]
Length = 315
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/318 (41%), Positives = 193/318 (60%), Gaps = 22/318 (6%)
Query: 164 KKVFDQMPMRSSATWNAMINGYC-SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+K+FD++P + TWNAMI GY S+ K F+A+ RD+ G +P D TM+
Sbjct: 3 RKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAM---RDL-----GQRPDDVTMLS 54
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPEND--VFIGTALVDMYSKCGCLDNALLIFSRM 280
+LS S+ LG LE G +H F M D V + AL+DMY+KCG + NAL +F M
Sbjct: 55 ILSASADLGDLEIGKKIH---RSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGM 111
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
R+K+ +W ++ G+A+HG E+I L M +KPN +TF ++ AC HAG V EG
Sbjct: 112 RKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGR 171
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
F+ MK+ + +EP+IKHY C+VD+LGRAG L EA++FI + I+P+AI+WR+LL AC V
Sbjct: 172 MYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRV 231
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HGDV LG + + LL+++ + S D+V LSNIYAS W V+ VRK M
Sbjct: 232 HGDVELGRRANEQLLKMRKD--------ESGDYVLLSNIYASQGEWDGVQKVRKLMDDGG 283
Query: 461 VETEPGSSILQTTTHYTL 478
V+ + G S++ + + +
Sbjct: 284 VKKKVGHSLIDSDNSFLM 301
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 23/260 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR--GFMFNVLVATTLIHFYASNKDISS 162
DD T + L + A L L +G++IH + G + +VL++ LI YA I +
Sbjct: 48 DDVTMLSILSASA---DLGDLEIGKKIHRSIFDMCCGDL-SVLLSNALIDMYAKCGSIGN 103
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+VF M + +++WN++I G A ++ LF++ML +KP + T V
Sbjct: 104 ALEVFQGMRKKDTSSWNSIIGGLALHGH-----AEESINLFQEML--RLKMKPNEITFVA 156
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR- 281
VL S G + G M+ F + N G +VD+ + G L A M
Sbjct: 157 VLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYG-CMVDILGRAGLLIEAFDFIDTMEI 215
Query: 282 EKNVLTWTAMATGMAIHGK---GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
E N + W + +HG G A L MR + V ++++A+ V++
Sbjct: 216 EPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRK-DESGDYVLLSNIYASQGEWDGVQK 274
Query: 339 GLHLFDNMKSKWGVEPHIKH 358
L D+ GV+ + H
Sbjct: 275 VRKLMDD----GGVKKKVGH 290
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 164/484 (33%), Positives = 254/484 (52%), Gaps = 58/484 (11%)
Query: 26 QIHAQLI-TNALKSPPLYAQLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
QIH+ + +N L + + L+ +Y C + QS VF + +N+LI
Sbjct: 172 QIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQS------VFDEMTVRSRVSWNSLIT 225
Query: 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK- 137
C P +++ +F + G+ D+ T + +CA ++S + G+QIH V K
Sbjct: 226 CYEQNGPVDEALKIFVEMIKCGVEP-DEVTLASVVSACA---TISAIKEGQQIHARVVKC 281
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------- 190
F ++++ L+ YA I+ + +FD MP+RS + +M++GY SK
Sbjct: 282 DEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYM 341
Query: 191 ----KAKD----------CAFN-----ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
KD C N AL+LFR L+ V PT T +L+ + L
Sbjct: 342 FSNMMVKDVITWNALIAGCTQNGENEEALILFR--LLKRESVWPTHYTFGNLLNACANLA 399
Query: 232 LLEFGACVHGYMEKTF----YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
L+ G H ++ K Y ++DVF+G +L+DMY KCG ++N +F M EK+ ++
Sbjct: 400 DLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVS 459
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W AM G A +G GN+A+ + M + G P+ VT + AC HAGL++EG + F +M
Sbjct: 460 WNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMT 519
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
++ G+ P HY+C+VDLLGRAG+LEEA N I + ++PDAI+W SLL+AC VH ++ LG
Sbjct: 520 AQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLG 579
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
E V K LL++ PE S +V LSN+YA W +V VRK M+ + V +PG
Sbjct: 580 EYVVKKLLEVDPE--------NSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGC 631
Query: 468 SILQ 471
S ++
Sbjct: 632 SWIE 635
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 169/342 (49%), Gaps = 34/342 (9%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
++++ FA G L +++++ AL +CA L L LG QIH V + ++ +V +
Sbjct: 134 EALVYFAQMHGHGFLV-NEYSFGSALSACA---GLQDLKLGSQIHSLVYRSNYLSDVYMG 189
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+ L+ Y+ + + VFD+M +RS +WN++I C + D AL +F +M+
Sbjct: 190 SALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLIT--CYEQNGPVD---EALKIFVEMI 244
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
GV+P + T+ V+S + + ++ G +H + K ND+ +G AL+DMY+KC
Sbjct: 245 --KCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEF-RNDLILGNALLDMYAKC 301
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
++ A +IF M ++V++ T+M +G A K A + +M + + +T+ +L
Sbjct: 302 NRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNM----MVKDVITWNALI 357
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS-------C--IVDL-LGRAGH---LEE 374
A C G EE L LF +K + V P HY+ C + DL LGR H L+
Sbjct: 358 AGCTQNGENEEALILFRLLKRE-SVWP--THYTFGNLLNACANLADLQLGRQAHSHVLKH 414
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
+ F G D + SL+ G V G +V + +L+
Sbjct: 415 GFRFQYGED--SDVFVGNSLIDMYMKCGSVENGCRVFQHMLE 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 152/357 (42%), Gaps = 59/357 (16%)
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
LL D + L CAR S ++H + K F + LI Y +
Sbjct: 14 LLFLDSSPFSKLLNQCARSRSARDT---SRVHACIIKSPFASETFIQNRLIDVYGKCGCV 70
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYC------------SQSKKAKDCAFNALV------- 201
+K+FD+M R+ +WN++I + + + C++N+++
Sbjct: 71 DVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHG 130
Query: 202 LFRDMLVDVS-----GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
F + LV + G + + LS + L L+ G+ +H + ++ Y+ +DV++
Sbjct: 131 RFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYL--SDVYM 188
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
G+ALVDMYSKCG ++ A +F M ++ ++W ++ T +G +EA+++ M CGV
Sbjct: 189 GSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGV 248
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
+P+ VT S+ +AC ++EG + + + + ++D+ + + EA
Sbjct: 249 EPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEAR 308
Query: 377 NFIMGIPIK------------------------------PDAILWRSLLSACNVHGD 403
+PI+ D I W +L++ C +G+
Sbjct: 309 IIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGE 365
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
M E ++F +++ ++K G LD+A+ IF +M + + +W +M +G HG+ +EA+
Sbjct: 80 MLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYF 139
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDL 365
M G N +F S +AC AGL + L L + S + + S +VD+
Sbjct: 140 AQMHGHGFLVNEYSFGSALSAC--AGL--QDLKLGSQIHSLVYRSNYLSDVYMGSALVDM 195
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQP-EVT 422
+ G +E A + + ++ + W SL++ +G D AL V I ++P EVT
Sbjct: 196 YSKCGRVEYAQSVFDEMTVRS-RVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVT 254
Query: 423 FVDV--ACTS 430
V AC +
Sbjct: 255 LASVVSACAT 264
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 235/477 (49%), Gaps = 84/477 (17%)
Query: 64 FVFTHFDPPNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+T + PN+F++N +I+ V +V +Y F S + C L
Sbjct: 35 LAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFP--SLIKACGL 92
Query: 123 -STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK----------------------- 158
S L +H HV + GF +V V T+L+ FY+S
Sbjct: 93 VSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTM 152
Query: 159 --------DISSGKKVFDQMPMRSSATWNAMINGYC------------------------ 186
D+SS ++FD MP R+ ATWN +I+GY
Sbjct: 153 VSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWT 212
Query: 187 ------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
SQ+K+ ++ AL +F +M G+ P + TM V+S + LG L+ G +H
Sbjct: 213 TMINCYSQNKRFRE----ALGVFNEMAKH--GISPDEVTMATVISACAHLGALDLGKEIH 266
Query: 241 GY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
Y M+ F + DV+IG+AL+DMY+KCG LD +LL+F ++REKN+ W ++ G+A+HG
Sbjct: 267 YYIMQHGFNL---DVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHG 323
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
EA+ + D M +KPN VTF S+ +AC HAGL+EEG F +M + P ++HY
Sbjct: 324 YAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHY 383
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLL +AG LEEA I + ++P+A++W +LLS C +H ++ + + L+ L+P
Sbjct: 384 GCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEP 443
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSSILQTTTH 475
S + L N+ A RW + +R MK + VE PGSS ++ +
Sbjct: 444 --------GNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQ 492
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 17/250 (6%)
Query: 54 ASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTY 109
A + + +F ++ + T+I C ++++ VF G+ + D+ T
Sbjct: 188 ARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGI-SPDEVTM 246
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ +CA +L LG++IH ++ + GF +V + + LI YA + +F +
Sbjct: 247 ATVISACAHLGALD---LGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFK 303
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+ ++ WN++I G A AL +F M + +KP T V VLS +
Sbjct: 304 LREKNLFCWNSVIEGLAVHG-----YAEEALAMFDKM--EREKIKPNGVTFVSVLSACNH 356
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTW 288
GL+E G M + +P G +VD+ SK G L+ AL + M+ E N + W
Sbjct: 357 AGLIEEGRKRFASMTRDHSIPPGVEHYG-CMVDLLSKAGLLEEALQLIRTMKLEPNAVIW 415
Query: 289 TAMATGMAIH 298
A+ +G +H
Sbjct: 416 GALLSGCKLH 425
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
D ++ + S +D A+L +++M NV + AM G + +A+ L M
Sbjct: 12 QDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQM 71
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK-W--GVEPHIKHYSCIVDLLGR 368
V P + TF SL AC GLV + L + + W G + H+ + +VD
Sbjct: 72 LRANVSPTSYTFPSLIKAC---GLVSQ-LRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSS 127
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
G +EE+ +P + D W +++S GD++
Sbjct: 128 MGRIEESVRVFDEMPER-DVFAWTTMVSGLVRVGDMS 163
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 200/332 (60%), Gaps = 15/332 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ ++ YA ++ + +FD MP R++ATW+ MI+G + + AL L
Sbjct: 176 NVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGR-----CWEALGL 230
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F DM V SG+ P + +V V+S +Q+ LE GA VH Y E+ V + +A++D
Sbjct: 231 FGDM-VHSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQEL-QGAMSVVLASAIID 288
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG + +A+ +F+ M +N+ +W AM TG+A++G +A+ LL M+ GV+PN +T
Sbjct: 289 MYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLAMNGGERQALSLLWKMQMVGVQPNDIT 348
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L +AC H+GLV EG LFD+M +G++P +HY +VDL+GR+G + EA F+ +
Sbjct: 349 FIGLLSACTHSGLVNEGRRLFDSMIEDFGIQPFPQHYGLMVDLIGRSGRVMEALYFVKSM 408
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P LW +L SAC +HG V LGE+V K L++L+P ++ LSN+Y S
Sbjct: 409 PVEPHPGLWGALASACKMHGKVELGEEVAKKLIELEPR--------HGSRYILLSNLYGS 460
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
RW D+ SVRK +K ++V G++++ T+
Sbjct: 461 VNRWDDMASVRKILKRRKVPKGTGNAVVGMTS 492
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 150/372 (40%), Gaps = 68/372 (18%)
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST---LWLGRQIHVH 134
N+L+R P + + + L D + F+L +CAR ++ L + +H
Sbjct: 44 NSLLRVAPCSSACALILRLLLLHRLRPDHISLSFSLHACARVVPTTSRYPLTVTGLLHSL 103
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+ G +V VA + Y + D++S +
Sbjct: 104 ALRLGHARDVYVANAAVSSYFAASDVASADR----------------------------- 134
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY--MPEN 252
LF ++ DV+ V T TTMV + + LG + F+ M E
Sbjct: 135 -------LFAEVSTDVADVV-TWTTMVTGHASAGGLG-----------RARHFFDAMSER 175
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL-DSM 311
+V A++ Y++ G L A +F M +N TW+ M +G+ + G+ EA+ L D +
Sbjct: 176 NVVSWNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGRCWEALGLFGDMV 235
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
G+ PN S+ +AC +E G + + + + S I+D+ G+ G
Sbjct: 236 HSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQELQGAMSVVLASAIIDMYGKCGG 295
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL------QLQP-EVTFV 424
+ A +P++ + W ++++ ++G GE+ LL +QP ++TF+
Sbjct: 296 IHSAIRVFAAMPMR-NIYSWNAMITGLAMNG----GERQALSLLWKMQMVGVQPNDITFI 350
Query: 425 DV--ACTSEDFV 434
+ ACT V
Sbjct: 351 GLLSACTHSGLV 362
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 210/395 (53%), Gaps = 50/395 (12%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV L +C + + LG Q+H V G + ++ V L+ YA D+ S KVF
Sbjct: 124 TYVSVLSACGK--GTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVF 181
Query: 168 D-------------------------------QMPMRSSATWNAMINGYCSQSKKAKDCA 196
D +MP R + +W AMI+GY ++ +
Sbjct: 182 DGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFRE--- 238
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL +FR+M S V + TMV V++ +QLG LE G V YM + + D F+
Sbjct: 239 --ALEMFREM--QYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGI--KMDAFV 292
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
G AL+DMYSKCG ++ AL +F M ++ TWTA+ G+A++G EAI + M
Sbjct: 293 GNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSE 352
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ VTF + AC HAGLV++G F +M + + P++ HY CI+DLLGRAG + EA
Sbjct: 353 TPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEAL 412
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
+ I +P+ P++ +W +LL+AC VHG+ +GE V + LL+L PE + V ++ L
Sbjct: 413 DTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMV--------YILL 464
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SNIYA RW DV +R + K ++ EPG S+++
Sbjct: 465 SNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIE 499
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 170/387 (43%), Gaps = 54/387 (13%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVL 145
+D+V +A +++G D +T+ L + AR S + R +H HV + G N
Sbjct: 1 EDAVAGYARMLARGGRP-DAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAH 59
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
VA++L+ Y + D ++ + + + + WNA+I+G+ + + C F D
Sbjct: 60 VASSLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGRFGESCGS-----FVD 112
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLE--FGACVHGYMEKTFYMPENDVFIGTALVDM 263
M +G PT T V VLS + G + G VHG + + +P D+ + ALVDM
Sbjct: 113 MAR--AGAAPTPVTYVSVLSACGK-GTRDVLLGMQVHGRVVGSGVLP--DLRVENALVDM 167
Query: 264 YSKC-------------------------------GCLDNALLIFSRMREKNVLTWTAMA 292
Y++C G +D A +F RM E++ ++WTAM
Sbjct: 168 YAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMI 227
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G + EA+ + M+ V + T S+ AC G +E G + M S+ G+
Sbjct: 228 DGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYM-SRQGI 286
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
+ + ++D+ + G +E A + G+ + D W +++ V+G ++
Sbjct: 287 KMDAFVGNALIDMYSKCGSIERALDVFKGMHHR-DKFTWTAIILGLAVNGYEEEAIEMFH 345
Query: 413 ILLQLQP---EVTFVDV--ACTSEDFV 434
++++ EVTF+ V ACT V
Sbjct: 346 RMIRVSETPDEVTFIGVLTACTHAGLV 372
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 162/500 (32%), Positives = 253/500 (50%), Gaps = 59/500 (11%)
Query: 11 ALLKLKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
A+ L + T ++QIHA+L + LK L ++ + + + +
Sbjct: 9 AIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVAL--SDHKYLDYANQILDRS 66
Query: 70 DPPNLFLFNTLIRC---TP-PQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLST 124
+ P LF N++IR +P P+ S + +S G L D++T F + +C L
Sbjct: 67 EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT---GLRM 123
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------------------- 156
G Q+H +RGF + V T LI YA
Sbjct: 124 RETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTA 183
Query: 157 ---NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
D+ +K+F+ MP R WNAMI+GY +Q ++++ AL +F L+ + GV
Sbjct: 184 CARCGDVVFARKLFEGMPERDPIAWNAMISGY-AQVGESRE----ALNVFH--LMQLEGV 236
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
K M+ VLS +QLG L+ G H Y+E+ + V + T LVD+Y+KCG ++ A
Sbjct: 237 KVNGVAMISVLSACTQLGALDQGRWAHSYIERN--KIKITVRLATTLVDLYAKCGDMEKA 294
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F M EKNV TW++ G+A++G G + + L M+ GV PNAVTF S+ C
Sbjct: 295 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVV 354
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
G V+EG FD+M++++G+EP ++HY C+VDL RAG LE+A + I +P+KP A +W S
Sbjct: 355 GFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSS 414
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL A ++ ++ LG K +L+L+ +V LSNIYA + W +V VR
Sbjct: 415 LLHASRMYKNLELGVLASKKMLELE--------TANHGAYVLLSNIYADSNDWDNVSHVR 466
Query: 454 KQMKVKRVETEPGSSILQTT 473
+ MK K V +PG S+++
Sbjct: 467 QSMKSKGVRKQPGCSVMEVN 486
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 251 bits (640), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 235/452 (51%), Gaps = 33/452 (7%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTP 85
QIHA I L S + + ++ + V H+D L + TLI+
Sbjct: 159 QIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWD---LISWTTLIQAYS 215
Query: 86 ----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
P +++ F + T D T V L +C++ L LG++I ++ F
Sbjct: 216 KMGYPSEAIAAFF----RMNCTADRMTLVVVLSACSQ---LGDFTLGKKILAYMDHHLFD 268
Query: 142 F--NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+V + L+ Y +++F MP+++ +WN+MI+G Q + A
Sbjct: 269 VHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKE-----A 323
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L +FR M G+KP T+V VL+ + LG LE G VH Y++K + D ++ A
Sbjct: 324 LHMFRRM--QTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHM--KADGYVANA 379
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMY+KCG +D A ++F M+ K+V ++TAM G A+HGK + A+ + M GV+P+
Sbjct: 380 LVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPD 439
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VT + +AC HAGL+EEG F +M + ++P +HY C+VDLLGRAG + EA F
Sbjct: 440 HVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFT 499
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+PI PDA +W SLL AC +H V LGE V + L++++PE ++ +SNI
Sbjct: 500 NKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEPE--------RDGAYILMSNI 551
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
Y+SA RW D RK MK ++ PG S ++
Sbjct: 552 YSSANRWRDALKWRKAMKQNNIKKTPGCSSIE 583
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/447 (27%), Positives = 202/447 (45%), Gaps = 44/447 (9%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS--PQSTKIVHF 64
H LL L + + IKQIHA +I +I L CTK S Q +
Sbjct: 25 HEFPQLLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISL-CTKITSLLQQDVHLADS 83
Query: 65 V-----------FTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
+ F H +P +++FN +I+ ++ + + + +L + L
Sbjct: 84 IQNLWYASSLANFCHQNP--VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTL 141
Query: 114 GSCARFCSLSTLWL-GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+ CS S ++ QIH H K G N+ V TL+ FYA + I + +KVFDQ P
Sbjct: 142 PYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPH 201
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
+W +I Y ++ A FR T+V VLS SQLG
Sbjct: 202 WDLISWTTLIQAYSKMGYPSEAIA----AFFR------MNCTADRMTLVVVLSACSQLGD 251
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
G + YM+ + +DVF+G AL+DMY KCG A +F M KN+++W +M
Sbjct: 252 FTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMI 311
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLF---DNMK 347
+G+A G EA+ + M+ G+KP++VT + +C + G +E G +H + ++MK
Sbjct: 312 SGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMK 371
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVA 405
+ V + +VD+ + G +++A+ + K D + +++ +HG D A
Sbjct: 372 ADGYVA------NALVDMYAKCGSIDQAFMVFQAMKCK-DVYSYTAMIVGFAMHGKADRA 424
Query: 406 LGEKVGKILLQLQPE-VTFVDV--ACT 429
L + ++P+ VT V V AC+
Sbjct: 425 LAIFSEMPRMGVRPDHVTLVGVLSACS 451
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 138/418 (33%), Positives = 228/418 (54%), Gaps = 25/418 (5%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S + +F D + +N++ ++ P+ ++ VF + +G+ T + AL
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI-DPTGVTIMEAL 356
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA L L G+ +H V + ++ V +LI Y+ K + +F+ + R
Sbjct: 357 HACA---DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ +WNAMI GY + ++ AL F +M G+KP TMV V+ ++L +
Sbjct: 414 THVSWNAMILGYAQNGRVSE-----ALNCFSEM--KSLGMKPDSFTMVSVIPALAELSVT 466
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+HG + ++ + ++F+ TALVDMYSKCG + A +F + +++V+TW AM
Sbjct: 467 RHAKWIHGLIIRSCL--DKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMID 524
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G HG G A+ L D M+ V+PN +T+ S+ +AC H+GLV+EGL F +MK +G+E
Sbjct: 525 GYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P + HY +VDLLGRAG ++EA++FI +PI P ++ ++L AC +H ++ +GEK K
Sbjct: 585 PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKK 644
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P+ V L+NIYAS +W V VRK M+ K ++ PG S+++
Sbjct: 645 LFELNPD--------EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 26/344 (7%)
Query: 4 LPGH--RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTK 60
+P H + A + L+ T+ + QI +I N L + L+ +L+ L+ + ++ +
Sbjct: 43 IPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAAR 102
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDD-----FTYVFALGS 115
VF D L++T+++ S+ ++ + + +DD + + + L
Sbjct: 103 ----VFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCR--MRYDDVKPVVYNFTYLLKV 156
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C L G++IH + F NV T +++ YA + I K+FD+MP R
Sbjct: 157 CGDNADLKR---GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WN +I G+ SQ+ AK A ++ +D G +P T+V VL ++ +GLL
Sbjct: 214 VSWNTIIAGF-SQNGFAKK-ALELVLRMQD-----EGQRPDSITLVTVLPAAADVGLLMV 266
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +HGY + + V I TAL DMYSKCG ++ A LIF M +K V++W +M G
Sbjct: 267 GKSIHGYAIRAGFAKL--VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+G+ +AI + + M + G+ P VT AC G +E G
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 246/482 (51%), Gaps = 56/482 (11%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPPNLFLFNTL 80
+K+ HAQ++T L + + +C+ P + H +F P + + NT+
Sbjct: 20 QLKEAHAQVLTCGLGTDSFALSRLLAFCSH---PLHGSLPHAWKLFQQIQHPTICICNTM 76
Query: 81 IRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I+ + +++ +++ + GL D++T + L +CA L + LG H
Sbjct: 77 IKAFVLKGKLINTIQIYSQMLENGLYP-DNYTLPYVLKACA---GLQSCHLGESAHGQSV 132
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS--------- 187
K GF F++ V TLI Y+S ++ + + +FD+MP ++ +W MI+GY
Sbjct: 133 KLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARM 192
Query: 188 --QSKKAKD---------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
KD C L +FR L+ +G++P + +V +L + L
Sbjct: 193 LFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFR--LMQSTGLEPDEAILVSILCACAHL 250
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G +E G VH Y+++ + V + T L+DMY+KCG LD A +F M +++ + W A
Sbjct: 251 GAMEIGVWVHRYLDQLGH--PLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNA 308
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
M +GMA++G G+ A+RL M GVKP+ +TF ++F AC ++G+ E + L ++M + +
Sbjct: 309 MISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVY 368
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK----PDAILWRSLLSACNVHGDVAL 406
+EP +HY CIVDLLGRAG L+EA I+ +P AI WR+LLSAC HG +
Sbjct: 369 NMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEV 428
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
E + L L+ S +V LSN+YA+A + V +RK M+ + V+ PG
Sbjct: 429 AEDAAQRLFHLEHH---------SGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPG 479
Query: 467 SS 468
S
Sbjct: 480 CS 481
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 220/395 (55%), Gaps = 51/395 (12%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA------------ 155
T V L +C++ L T G+++H +V N+++ +I YA
Sbjct: 221 TLVLVLSACSKLKDLRT---GKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 277
Query: 156 ---SNKDISS----------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
+N+DI S + FD+MP + +W AMI+GY +S + K+
Sbjct: 278 RSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYI-RSNRFKE-- 334
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL LFR+M + VKP + TMV VL+ + LG LE G + Y+++ +ND+F+
Sbjct: 335 --ALELFRNM--QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRN--KIKNDLFV 388
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
AL+DMY KCG +D A IF M +++ TWTAM G+A++G G +A+ + +M +
Sbjct: 389 RNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASI 448
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ +T+ + +AC H GLV++G F M S+ G+EP+I HY C+VDLL RAG L+EAY
Sbjct: 449 LPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAY 508
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I +PIK ++I+W +LL+ C V+ + + E V K +L+L+P+ V +V L
Sbjct: 509 EVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV--------YVLL 560
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYA+ +RW D+ +R+ M K ++ PG S+++
Sbjct: 561 CNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIE 595
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 126/479 (26%), Positives = 211/479 (44%), Gaps = 58/479 (12%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
S P H +LL+ + ++Q+H Q I L + P+ + +C +
Sbjct: 14 FSPPTHPLISLLE--TCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYG-DFQY 70
Query: 62 VHFVFTHFDPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+F PNLF++NT+IR PQ V ++ + +G+ D +T+ F
Sbjct: 71 ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP-DRYTFPFLFKGFT 129
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R +L GRQ+H HV K G +NV V T L+ Y + + + VFD P T
Sbjct: 130 RDIALE---YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVIT 186
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN +I+ Y K + + LF ++++ V PT T+V VLS S+L L G
Sbjct: 187 WNMIISAYNKVGKFEE-----SRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 239
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI--------------------- 276
VH Y++ E+++ + A++DMY+ CG +D+AL I
Sbjct: 240 KVHSYVKNC--KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTN 297
Query: 277 ----------FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
F +M EK+ ++WTAM G + EA+ L +M+ VKP+ T S+
Sbjct: 298 LGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSV 357
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC H G +E G + ++ + + ++D+ + G +++A + + +
Sbjct: 358 LTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QR 415
Query: 387 DAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIY 440
D W +++ A N HG+ AL + + P E+T++ V ACT V Y
Sbjct: 416 DKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 474
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 28/352 (7%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQMPMRSSATWNAMINGYC 186
+Q+H K+G N ++ ++ F +++ D +++FD++P + WN MI GY
Sbjct: 35 QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 94
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
D + L+ +ML GVKP T + ++ LE+G +HG++ K
Sbjct: 95 RL-----DFPQLGVSLYLEMLR--RGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLK- 146
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ + +VF+ TALV MY CG LD A +F + +V+TW + + GK E+ R
Sbjct: 147 -HGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRR 205
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M D V P VT + +AC + G + +K+ VE ++ + ++D+
Sbjct: 206 LFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESNLVLENAMIDMY 264
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE-KVGKILLQLQPEVTFVD 425
G ++ A + + D I W +++S G LGE V + PE +V
Sbjct: 265 ADCGEMDSALGIFRSMNNR-DIISWTTIVS-----GFTNLGEIDVARNYFDKMPEKDYV- 317
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS--SILQTTTH 475
+ A+ + Y + R+ + + + M+ V+ + + S+L H
Sbjct: 318 ------SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAH 363
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 159/467 (34%), Positives = 249/467 (53%), Gaps = 38/467 (8%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCT-KKASPQSTKIVHFVFT 67
FALL + P+H++ +HA+L+ +L + L ++L+ +Y K SP S VF
Sbjct: 15 FALLH--SSPNPTHLRHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSLS----VFL 68
Query: 68 HFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
H N++ +N +I R P S+ +F + F+ VF L R C+ S
Sbjct: 69 HMPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQ-----MRHFNQPPDVFTLPLVLRACAAS 123
Query: 124 -TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
++ LG +H + G ++ VA+ L+ Y + + + +FD+MP R + W AM+
Sbjct: 124 GSVKLGVSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAML 183
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
GY + AL +FR M+ +GV M+ +L QLG L+ G VHG+
Sbjct: 184 AGYAQHEEP-----MLALSVFRQMVS--AGVALDGVVMISLLLACGQLGWLKHGKSVHGW 236
Query: 243 M-EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ + + N +G ALV Y KC L + +F +M E++V++W+++ G + G
Sbjct: 237 ITRRCLALGLN---LGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSGNV 293
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+ A+ L D MR GVKPN VTF +AC H G+VE F+ MK ++GV P +KHY+C
Sbjct: 294 DIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYFEMMK-EYGVAPELKHYAC 352
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VD LGRAG LE+A FI +P++ D + +LL C VHG+ +GE+V K L+ L+PE
Sbjct: 353 MVDCLGRAGMLEDAERFIEEMPVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPE- 411
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+ ++V L+NIYA A R+ D E VR+ MK +++ PG S
Sbjct: 412 -------KASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVPGCS 451
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 238/457 (52%), Gaps = 35/457 (7%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP-NLFLFNTLIRC- 83
Q+HAQ I + + +L+ SP + + +P N + +NT+IR
Sbjct: 6 QLHAQFIKSQNQR-----NFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAY 60
Query: 84 ----TPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
P S+ +F + D FTY FAL SC R L +Q+H +
Sbjct: 61 SHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGR---LKLTQQAKQLHGFI 117
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K GF F++ + LIH Y+ ++ ++VFD+M R +W +MI G+ +
Sbjct: 118 NKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHH-----L 172
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPENDV 254
A+ LF+ ML GV + T++ VL + G L G VHG + EK N
Sbjct: 173 TVEAIQLFQRMLE--VGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKAN-- 228
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+ TAL+ MYSKCGCL++A +F + +++V WTAM G+A HG EAI L M C
Sbjct: 229 -VCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETC 287
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
VKP+ T + +A +AGLV EG F++++ ++ ++P+IKH+ C+VDLL + G LEE
Sbjct: 288 NVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEE 347
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A +FI +P+KPDA++WR+L+ AC VH D E++ K L+LQ A S ++
Sbjct: 348 AEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMK-HLELQGM-----SAHDSGSYI 401
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SN+YAS +W D VR+ M K + PGSS ++
Sbjct: 402 LASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIE 438
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 220/395 (55%), Gaps = 51/395 (12%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA------------ 155
T V L +C++ L T G+++H +V N+++ +I YA
Sbjct: 242 TLVLVLSACSKLKDLRT---GKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIF 298
Query: 156 ---SNKDISS----------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
+N+DI S + FD+MP + +W AMI+GY +S + K+
Sbjct: 299 RSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYI-RSNRFKE-- 355
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL LFR+M + VKP + TMV VL+ + LG LE G + Y+++ +ND+F+
Sbjct: 356 --ALELFRNM--QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRN--KIKNDLFV 409
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
AL+DMY KCG +D A IF M +++ TWTAM G+A++G G +A+ + +M +
Sbjct: 410 RNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASI 469
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ +T+ + +AC H GLV++G F M S+ G+EP+I HY C+VDLL RAG L+EAY
Sbjct: 470 LPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAY 529
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I +PIK ++I+W +LL+ C V+ + + E V K +L+L+P+ V +V L
Sbjct: 530 EVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV--------YVLL 581
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYA+ +RW D+ +R+ M K ++ PG S+++
Sbjct: 582 CNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIE 616
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 126/479 (26%), Positives = 211/479 (44%), Gaps = 58/479 (12%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
S P H +LL+ + ++Q+H Q I L + P+ + +C +
Sbjct: 35 FSPPTHPLISLLE--TCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEY-GDFQY 91
Query: 62 VHFVFTHFDPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+F PNLF++NT+IR PQ V ++ + +G+ D +T+ F
Sbjct: 92 ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKP-DRYTFPFLFKGFT 150
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R +L GRQ+H HV K G +NV V T L+ Y + + + VFD P T
Sbjct: 151 RDIALE---YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVIT 207
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN +I+ Y K + + LF ++++ V PT T+V VLS S+L L G
Sbjct: 208 WNMIISAYNKVGKFEE-----SRRLF--LVMEDKQVLPTTVTLVLVLSACSKLKDLRTGK 260
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI--------------------- 276
VH Y++ E+++ + A++DMY+ CG +D+AL I
Sbjct: 261 KVHSYVKNC--KVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTN 318
Query: 277 ----------FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
F +M EK+ ++WTAM G + EA+ L +M+ VKP+ T S+
Sbjct: 319 LGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSV 378
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC H G +E G + ++ + + ++D+ + G +++A + + +
Sbjct: 379 LTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR- 436
Query: 387 DAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIY 440
D W +++ A N HG+ AL + + P E+T++ V ACT V Y
Sbjct: 437 DKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 28/352 (7%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQMPMRSSATWNAMINGYC 186
+Q+H K+G N ++ ++ F +++ D +++FD++P + WN MI GY
Sbjct: 56 QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 115
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
D + L+ +ML GVKP T + ++ LE+G +HG++ K
Sbjct: 116 RL-----DFPQLGVSLYLEMLR--RGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLK- 167
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ + +VF+ TALV MY CG LD A +F + +V+TW + + GK E+ R
Sbjct: 168 -HGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRR 226
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M D V P VT + +AC + G + +K+ VE ++ + ++D+
Sbjct: 227 LFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKN-CKVESNLVLENAMIDMY 285
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE-KVGKILLQLQPEVTFVD 425
G ++ A + + D I W +++S G LGE V + PE +V
Sbjct: 286 ADCGEMDSALGIFRSMNNR-DIISWTTIVS-----GFTNLGEIDVARNYFDKMPEKDYV- 338
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS--SILQTTTH 475
+ A+ + Y + R+ + + + M+ V+ + + S+L H
Sbjct: 339 ------SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAH 384
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 165/489 (33%), Positives = 254/489 (51%), Gaps = 60/489 (12%)
Query: 26 QIHAQLITNALKSPPLY--AQLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
QIHA LI+ + +Y + L+ +Y C A Q F N+ +N+LI
Sbjct: 172 QIHA-LISKSRYLLDVYMGSALVDMYSKCGVVACAQRA------FDGMAVRNIVSWNSLI 224
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
C P ++ VF + G+ D+ T + +CA S S + G QIH V K
Sbjct: 225 TCYEQNGPAGKALEVFVMMMDNGVEP-DEITLASVVSACA---SWSAIREGLQIHARVVK 280
Query: 138 RGFMFNVLV-ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-SQSKKAKDC 195
R N LV L+ YA + ++ + VFD+MP+R+ + +M+ GY + S KA
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARL 340
Query: 196 AF-----------NALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
F NAL+ LF +L+ + PT T +L+ + L
Sbjct: 341 MFSNMMEKNVVSWNALIAGYTQNGENEEAVRLF--LLLKRESIWPTHYTFGNLLNACANL 398
Query: 231 GLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
L+ G H + K + E+D+F+G +L+DMY KCG +++ L+F RM E++V+
Sbjct: 399 ADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVV 458
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W AM G A +G G A+ + M G KP+ VT + +AC HAGLVEEG F +M
Sbjct: 459 SWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSM 518
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+++ G+ P H++C+VDLLGRAG L+EA + I +P++PD ++W SLL+AC VHG++ L
Sbjct: 519 RTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIEL 578
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
G+ V + L+++ P S +V LSN+YA RW DV VRKQM+ + V +PG
Sbjct: 579 GKYVAEKLMEIDP--------LNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPG 630
Query: 467 SSILQTTTH 475
S ++ +
Sbjct: 631 CSWIEIQSR 639
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 184/426 (43%), Gaps = 58/426 (13%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
VF P+ +N ++ D L F + +++++ AL +CA
Sbjct: 107 VFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACA---G 163
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L+ L +G QIH ++K ++ +V + + L+ Y+ ++ ++ FD M +R+ +WN++
Sbjct: 164 LTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSL 223
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I Y K A V+ D +GV+P + T+ V+S + + G +H
Sbjct: 224 ITCYEQNGPAGK--ALEVFVMMMD-----NGVEPDEITLASVVSACASWSAIREGLQIHA 276
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR---------------------- 279
+ K ND+ +G ALVDMY+KC ++ A L+F R
Sbjct: 277 RVVKRDKY-RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASV 335
Query: 280 ---------MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
M EKNV++W A+ G +G+ EA+RL ++ + P TF +L AC
Sbjct: 336 KAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395
Query: 331 CHAGLVEEGLHLFDNMKSK--W---GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ ++ G + W G E I + ++D+ + G +E+ + ++
Sbjct: 396 ANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGC-LVFERMVE 454
Query: 386 PDAILWRSLL--SACNVHGDVALGEKVGKILLQLQP--EVTFVDV--ACTSEDFVALSNI 439
D + W +++ A N +G AL E K+L+ Q VT + V AC+ V
Sbjct: 455 RDVVSWNAMIVGYAQNGYGTNAL-EIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRR 513
Query: 440 YASAER 445
Y + R
Sbjct: 514 YFHSMR 519
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 30/311 (9%)
Query: 100 GLLTF-DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158
G L F D + L SC R S R+IH + K F + + L+ Y
Sbjct: 12 GELCFLDSSPFAKLLDSCVRSKSGID---ARRIHARIIKTQFSSEIFIQNRLVDAYGKCG 68
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSK------------KAKDCAFNALV----- 201
+KVFD+MP R++ ++NA+++ K + C++NA+V
Sbjct: 69 YFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQ 128
Query: 202 --LFRDML---VDVSGVK--PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
F + L VD+ + + LS + L L G +H + K+ Y+ DV
Sbjct: 129 HDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLL--DV 186
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
++G+ALVDMYSKCG + A F M +N+++W ++ T +G +A+ + M D
Sbjct: 187 YMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDN 246
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
GV+P+ +T S+ +AC + EGL + + + + + +VD+ + + E
Sbjct: 247 GVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNE 306
Query: 375 AYNFIMGIPIK 385
A +P++
Sbjct: 307 ARLVFDRMPLR 317
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 53/271 (19%)
Query: 235 FGACVHGYME---KTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
+G C GY E K F MP+ + F A++ + +K G LD A +F M E + +W A
Sbjct: 64 YGKC--GYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNA 121
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----------HAGLVEEG 339
M +G A H + EA+R M N +F S +AC HA L+ +
Sbjct: 122 MVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHA-LISKS 180
Query: 340 LHLFD--------NMKSKWGVEP------------HIKHYSCIV---DLLGRAGHLEEAY 376
+L D +M SK GV +I ++ ++ + G AG E +
Sbjct: 181 RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF 240
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV-- 434
+M ++PD I S++SAC + G LQ+ V D D V
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREG-------LQIHARVVKRDK--YRNDLVLG 291
Query: 435 -ALSNIYASAERWPDVESVRKQMKVKRVETE 464
AL ++YA R + V +M ++ V +E
Sbjct: 292 NALVDMYAKCRRVNEARLVFDRMPLRNVVSE 322
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/461 (31%), Positives = 239/461 (51%), Gaps = 26/461 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +++IHA +I + L A + +C S S +F + P
Sbjct: 11 LQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSG-SLAYAQLLFHQMECPQT 69
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+N++IR + P D+++ + V D FT+ F L +C R + ++
Sbjct: 70 EAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKC---KE 126
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H V + G+ +V+V T L+ Y++ + ++VFD+MP R WNAMI+ + Q
Sbjct: 127 VHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGL 186
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ A R VD+ G T+V ++S + LG L G +H + +
Sbjct: 187 HQE--ALQTYNQMRSENVDIDGF-----TLVGLISSCAHLGALNIGVQMHRFARENGL-- 237
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ +++G AL+DMY+KCG LD A+LIF RM+ K++ TW +M G +HG+G+EAI
Sbjct: 238 DQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQ 297
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M + ++PN VTF L C H GLV+EG+ F+ M SK+ ++P +KHY C+VDL GRAG
Sbjct: 298 MLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAG 357
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++A I+ D++LWR LL +C +H +V +GE L +L A ++
Sbjct: 358 KLDKALE-IVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELG--------ATSA 408
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D + L+ IYA + V +RK +K + +T PG S ++
Sbjct: 409 GDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIE 449
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/440 (34%), Positives = 236/440 (53%), Gaps = 28/440 (6%)
Query: 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-----TPPQDSVLV 92
+P + +L+ +C S S VF P +N++IR +P Q +V
Sbjct: 429 NPSISEKLLN-FCAVSVSG-SLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIV 486
Query: 93 F-AYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
F + +S D +T+ F L +C R++H + + G+ +V++ T LI
Sbjct: 487 FYNHMLSASHARPDTYTFSFLLKACEEAKEEGKC---REVHGFIIRFGYDQDVVLCTNLI 543
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
YA N I + KVF++MP R +WN+MI+ YC + AL ++ M +S
Sbjct: 544 RSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEE-----ALKMYDQM--RIS 596
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
V T+V +LS + +G L G +H + + + ++F+G AL+DMY+KCG L
Sbjct: 597 NVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLV--ENIFVGNALIDMYAKCGSLA 654
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+AL IF+ M +++V TW +M G +HG+G+EAI SM GV+PN++TF L C
Sbjct: 655 SALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCS 714
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
H GLV+EG+ F M S++ ++P IKHY C+VDL GRAG L+EA I P + D +LW
Sbjct: 715 HQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLW 774
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
R+LL +C +H +V +GE + L+QL + + D V LS IYA A+ V
Sbjct: 775 RTLLGSCKIHRNVEIGEMAMRNLVQLG--------SLGAGDCVLLSGIYAEAKDLQGVAR 826
Query: 452 VRKQMKVKRVETEPGSSILQ 471
+RK ++ + ++T PG S ++
Sbjct: 827 MRKLIQSRGIKTTPGWSWIE 846
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 246/454 (54%), Gaps = 30/454 (6%)
Query: 27 IHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-- 83
+H +L+ + L + P L +LI +YC + + K VF +F++N + R
Sbjct: 96 VHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACK----VFDETREKTIFVWNAIFRALA 151
Query: 84 --TPPQDSVLVFAY--WVSKGLLTFDDFTYVFALGSCA-RFCSLSTLWLGRQIHVHVTKR 138
+ +D ++++ W+ + + FTY + L +C S+ L G++IH H+ +
Sbjct: 152 MASRGEDLLVLYGQMNWIG---IPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRH 208
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G+ +V V TTL+ YA +S VF MP ++ +W+AMI Y K
Sbjct: 209 GYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMK----- 263
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL LF+ M+++ P TMV VL + L LE G VH Y+ + ++ + +
Sbjct: 264 ALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGL--DSTLPVLN 321
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
L+ MY +CG + +F M++++V++W ++ + +HG G +AI++ ++M + GV P
Sbjct: 322 TLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSP 381
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ +TF ++ AC HAGLVEE LF++M +K+ + P ++HY+C+VD+LGRA L+EA
Sbjct: 382 SYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIEL 441
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + KP +W SLL +C +H +V L E+ +L +L+P+ + ++V LS+
Sbjct: 442 IQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPK--------NAGNYVLLSH 493
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
IYA + W DV VRKQ++ + ++ P S ++
Sbjct: 494 IYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEV 527
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 35/337 (10%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ + SC SLS G +H + G + +AT LI+ Y + KVF
Sbjct: 76 TFELLINSCIEQNSLSD---GVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVF 132
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS-- 225
D+ ++ WNA+ S+ + LVL+ M + G+ T VL
Sbjct: 133 DETREKTIFVWNAIFRALAMASRGE-----DLLVLYGQM--NWIGIPSNRFTYTYVLKAC 185
Query: 226 VSSQLGL--LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
V S+L + L G +H ++ + Y E V + T L+D+Y++ G + A +F M +K
Sbjct: 186 VVSELSICPLRKGKEIHAHILRHGY--EGHVHVMTTLLDVYARFGYVSYASSVFGAMPDK 243
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
N+++W+AM A + +A+ L M C PN +T S+ AC +E G
Sbjct: 244 NIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHG-K 302
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL---EEAYNFIMGIPIKPDAILWRSLLSAC 398
L + G++ + + ++ + GR G + + ++++ K D I W SL+S
Sbjct: 303 LVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMK----KRDVISWNSLISIY 358
Query: 399 NVHGDVALGEKVGKILLQL-----QPE-VTFVDVACT 429
+HG LG+K +I + P +TF+ V C
Sbjct: 359 GMHG---LGKKAIQIFENMINRGVSPSYITFITVLCA 392
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 194/337 (57%), Gaps = 19/337 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T+IH YA D+ +++FD R + +W++MI+ Y C+ AL L+R+M
Sbjct: 151 NTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGR-----CSKEALELWREM- 204
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
V+GV P +MV VLS S +G L GA VH ++E E D+ +GTALVDMY+KC
Sbjct: 205 -RVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRV--EVDMKLGTALVDMYAKC 261
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++N+L +F M K+VLTW++M G+A HG G++A+ L M G++PN +TF +
Sbjct: 262 GDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVL 321
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLV +G F +M GV P ++HY C+VDLLGRAGH+EEA I + KPD
Sbjct: 322 IACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPD 381
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
I+WR+LL AC +H +V + E+ L L P +V LSNIYA A W
Sbjct: 382 PIIWRTLLGACRIHKNVEIAEEAMAKLKVLDP--------LADGHYVLLSNIYAQANSWE 433
Query: 448 DVESVRKQMKVKRVETEPGSSIL--QTTTHYTLDGFR 482
V +RK ++ + ++ PG S + + T H + G R
Sbjct: 434 GVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDR 470
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 66/342 (19%)
Query: 127 LGRQIHVHVTKRGFMF-NVLVATTLIHFYASNK--DISSGKKVFDQMPMRSSATWNAMIN 183
LG +H + GF ++ V T L+ YA +I+ + FD+ P R N M+
Sbjct: 65 LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
Y ++ + A+ A +F M S L+ + +HGY
Sbjct: 125 AYVARGEVAE-----ARKVFDGM---------------------SGRDLVSWNTMIHGYA 158
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ ++F GT R+++ +W++M + A E
Sbjct: 159 VRGDVGMAREIFDGT----------------------RDRDAFSWSSMISAYAKGRCSKE 196
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A+ L MR GV P+ ++ S+ +AC G + G + ++S VE +K + +V
Sbjct: 197 ALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESN-RVEVDMKLGTALV 255
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ-----LQ 418
D+ + G +E + +P+K D + W S++ HG LG + + LQ
Sbjct: 256 DMYAKCGDIENSLKVFHAMPVK-DVLTWSSMIIGLANHG---LGHDALSLFSEMISQGLQ 311
Query: 419 P-EVTFVDV--ACTSEDFVALSNIYASAERWPDVESVRKQMK 457
P E+TF+ V ACT V Y S+ DV V +M+
Sbjct: 312 PNEITFIGVLIACTHVGLVNDGKKYFSS--MSDVHGVVPRME 351
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D + V L +C+ ++ L +G ++H V ++ + T L+ YA DI +
Sbjct: 212 DCISMVSVLSACS---AMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSL 268
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVF MP++ TW++MI G + +AL LF +M+ G++P + T + VL
Sbjct: 269 KVFHAMPVKDVLTWSSMIIGLANHG-----LGHDALSLFSEMI--SQGLQPNEITFIGVL 321
Query: 225 SVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNAL-LIFSRMRE 282
+ +GL+ G M +P + + +VD+ + G ++ A+ LI S +
Sbjct: 322 IACTHVGLVNDGKKYFSSMSDVHGVVPRMEHY--GCMVDLLGRAGHVEEAMELIRSMTFK 379
Query: 283 KNVLTWTAMATGMAIH 298
+ + W + IH
Sbjct: 380 PDPIIWRTLLGACRIH 395
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/491 (33%), Positives = 252/491 (51%), Gaps = 57/491 (11%)
Query: 19 TTPSHIKQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
TT +H++Q H ++ +AL + ++ I + S I F F H P +F++
Sbjct: 24 TTLTHLQQTHTFILKHALFQNDINLSRFIHKTASLNYPSYSYSI--FTFNHNRPFPIFVY 81
Query: 78 NTLIRCTPPQDSVLVFAYW--VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
N +I ++ L + + V + L+FD ++ + L S L+ LG+QIH
Sbjct: 82 NNIIYALYSSNAKLAVSIFRSVRRLGLSFDSYSLPYVLKSVV---CLNDFGLGKQIHCVG 138
Query: 136 TKRGFMFNVLVATTLIHFYASNK-----------------------------DISSGKKV 166
G NV V ++LI Y+ D+S+ +K+
Sbjct: 139 VVTGLDKNVSVCSSLIQMYSCYDVCSARKLFDEFGGNGCVLNAMIVAYVKVGDVSNARKL 198
Query: 167 FDQMPMRSSA--TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
FD M R +W AMI+GY +Q+ + A+ LFR M + VKP + ++ VL
Sbjct: 199 FDSMLERDKDVFSWTAMISGY-TQAHNPNE----AIKLFRRM--QLENVKPDEIAILAVL 251
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + LG L G +H Y+EK + V + +L+DMY+K G + AL +F M+ K
Sbjct: 252 SACADLGALHLGEWIHNYIEK--HKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKT 309
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++TWT M G+A+HG G EA+R+ M ++ VKPN VTF ++ +AC H GLVE G F
Sbjct: 310 IITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYF 369
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+M+S++G+EP I+HY C++DLLGRAGHL+EA ++ +P + +A +W SLL+A GD
Sbjct: 370 TSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGD 429
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
L E+ + L L+P C ++ LSN YAS RW + VRK M+ VE
Sbjct: 430 AELAEEALRHLTVLEPG------HCG--NYSLLSNTYASLGRWNESRMVRKVMQDAGVEK 481
Query: 464 EPGSSILQTTT 474
PG S ++
Sbjct: 482 VPGVSFIEVNN 492
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 214/396 (54%), Gaps = 43/396 (10%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ V AL +CA ++ +G+ IH K G + + LI+ Y+ DI +
Sbjct: 240 DEVVAVSALSACANLLVVN---MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVAR 296
Query: 165 KVFDQMPMRSSATWNAMINGY--CSQSKKAK------------------------DCAFN 198
K+FD+ + +WN+MI+GY C+ AK D
Sbjct: 297 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 356
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
L LF++M +SG KP +TT+V V+S ++L LE G VH Y+++ +V +GT
Sbjct: 357 TLALFQEM--QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI--NVILGT 412
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
L+DMY KCGC++ AL +F M EK + TW A+ G+A++G ++ + +M+ C V P
Sbjct: 413 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 472
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +TF + AC H GLV+EG H F +M ++P++KHY C+VDLLGRAG L+EA
Sbjct: 473 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 532
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-VALS 437
+ +P+ PD W +LL AC HGD +G +VG+ L++LQP+ + F V LS
Sbjct: 533 LNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPD---------HDGFHVLLS 583
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
NIYAS +W DV +R M RV PG S+++
Sbjct: 584 NIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 619
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 101/442 (22%), Positives = 180/442 (40%), Gaps = 108/442 (24%)
Query: 63 HFVFTHFD----------PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLT----FDDFT 108
HF F H D N F++N +IR +S FA+ + K +L+ D++T
Sbjct: 22 HFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPH-FAFTLYKSMLSNYLGADNYT 80
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
Y + +C+ + W +Q+H HV K GF +V V TLI+ ++ +++ +VF+
Sbjct: 81 YPLLIQACS---IRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFN 137
Query: 169 QMPMRSSATWNAMINGYCS------------QSKKAKDCAFNALV--------------L 202
+ + S +WN+++ GY Q + A N+++ L
Sbjct: 138 ESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKL 197
Query: 203 FRDML-----------------------------VDVSGVKPTDTTMVCVLSVSSQLGLL 233
F +ML + GV + V LS + L ++
Sbjct: 198 FDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVV 257
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG------------------------- 268
G +H K E+ + + AL+ MYSKCG
Sbjct: 258 NMGKLIHSLSLKI--GTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMIS 315
Query: 269 ------CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
+DNA IF M EK+V++W++M +G A + +E + L M+ G KP+ T
Sbjct: 316 GYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 375
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
S+ +AC +E+G + +K G+ ++ + ++D+ + G +E A G+
Sbjct: 376 LVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM 434
Query: 383 PIKPDAILWRSLLSACNVHGDV 404
I+ W +L+ ++G V
Sbjct: 435 -IEKGISTWNALILGLAMNGLV 455
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 254/493 (51%), Gaps = 55/493 (11%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S + +IH LIT L + P +Q + + +S F+ DPPN + +N +
Sbjct: 22 SELYKIHTLLITLGLSEEEPFVSQTLS-FSALSSSGDVDYAYKFLSKLSDPPN-YGWNFV 79
Query: 81 IR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
IR P+ S+ V+ + GLL D TY F + S +R LS LG +H V
Sbjct: 80 IRGFSNSRNPEKSISVYIQMLRFGLLP-DHMTYPFLMKSSSR---LSNRKLGGSLHCSVV 135
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------ 190
K G +++ + TLIH Y S +D +S +K+FD+MP ++ TWN++++ Y
Sbjct: 136 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARL 195
Query: 191 -------------------KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
K +N + D ++ + K + TMV V+ + LG
Sbjct: 196 VFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLG 255
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWT 289
L G VH Y+ ++P V + T+L+DMY+KCG + +A +F R ++E + L W
Sbjct: 256 ALNRGKTVHRYILDV-HLPLT-VILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWN 313
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
A+ G+A HG E+++L MR+ + P+ +TF L AAC H GLV+E H F ++K
Sbjct: 314 AIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES 373
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
G EP +HY+C+VD+L RAG +++A++FI +PIKP + +LL+ C HG++ L E
Sbjct: 374 -GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAET 432
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
VGK L++LQP +V L+N+YA +++ S+R+ M+ K V+ G SI
Sbjct: 433 VGKKLIELQPH--------NDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSI 484
Query: 470 LQTTTHYTLDGFR 482
L LDG R
Sbjct: 485 LD------LDGTR 491
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 213/362 (58%), Gaps = 19/362 (5%)
Query: 113 LGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
L S CS S L LG+ IH ++ + ++ V ++LI Y +I S + VF MP
Sbjct: 503 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
+ +WN MI+GY ALV+F DM +GVKP T VL SQL
Sbjct: 563 KTNVVSWNVMISGYVKVGS-----YLEALVIFTDM--RKAGVKPDAITFTSVLPACSQLA 615
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+LE G +H ++ ++ + N+V +G AL+DMY+KCG +D AL IF+++ E++ ++WT+M
Sbjct: 616 VLEKGKEIHNFIIES-KLEINEVVMG-ALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 673
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
HG+ EA++L + M+ KP+ VTF ++ +AC HAGLV+EG + F+ M +++G
Sbjct: 674 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 733
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLLSACNVHGDVALGEKV 410
+P ++HYSC++DLLGR G L EAY + P I+ D L +L SAC++H + LGE++
Sbjct: 734 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQI 793
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
G++L++ P+ ++ LSN+YAS ++W +V VR ++K ++ PG S +
Sbjct: 794 GRLLIEKDPD--------DPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWI 845
Query: 471 QT 472
+
Sbjct: 846 EV 847
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 215/462 (46%), Gaps = 59/462 (12%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIV 62
L +RC A + + K IH ++++ L++ L LI LY + QS K+V
Sbjct: 194 LARNRCLARVTAGSALEELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLF-QSAKLV 252
Query: 63 HFVFTHFDPPNLFLFNTLIR-CTPPQDSVLVFAYWVSKGLLTF-----DDFTYVFALGSC 116
+P ++ L+N L+ CT ++ + + V LL F D FTY L +C
Sbjct: 253 FQTIE--NPLDITLWNGLMAACT--KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC 308
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
+ L + G+ +H HV K GF +V+V ++ + YA K+FD+MP R A
Sbjct: 309 S---GLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVA 365
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+WN +I+ Y + K AL LF +M VSG KP T+ V+S ++L LE G
Sbjct: 366 SWNNVISCYYQDGQPEK-----ALELFEEM--KVSGFKPDSVTLTTVISSCARLLDLERG 418
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H + ++ + D F+ +ALVDMY KCGCL+ A +F +++ KNV++W +M G +
Sbjct: 419 KEIHMELVRSGFAL--DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 476
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
+ G I L M + G++P T +S+ AC + ++ G + VE I
Sbjct: 477 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEADI 535
Query: 357 KHYSCIVDLLGRAGHLEEAYNFIMGIP--------------------------------- 383
S ++DL + G++ A N +P
Sbjct: 536 FVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKA 595
Query: 384 -IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
+KPDAI + S+L AC+ + G+++ +++ + E+ V
Sbjct: 596 GVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 637
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 252/481 (52%), Gaps = 56/481 (11%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
A T +H++ L++ LK QL+Q++ S + H VF P L
Sbjct: 19 ATATAAHVQS----LVSLLLKHQAKRRQLLQIH--------SQLVAHQVFDRRPTPWHAL 66
Query: 77 FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
PQ+++ +F + + D + ++F+L +CA L+ W G Q+H V
Sbjct: 67 LKAYSHGPFPQEALNLFRD--AHRNMADDTYAFMFSLRACA---GLAWPWTGAQLHGLVI 121
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------ 190
++GF F+ V T+LI+ Y + + FD+MP+++ +WN MI G+ + +
Sbjct: 122 RKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAGRGEIEYARL 181
Query: 191 -------------------KAKDC-AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+ C + A+ L R M+ + G+ PT+ T++ V+ S +
Sbjct: 182 LFERMPSRNVVSWTGLIDGYTRSCHSVEAVALLRRMMAE--GISPTEITVLAVVPAISDI 239
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWT 289
G + G +HGY EK + D+ +G +L+D+Y+K G + ++L +F M +N+++WT
Sbjct: 240 GRILMGETLHGYCEKNGLVL--DIRVGNSLIDLYAKIGSIQSSLKVFHGMLNRRNLVSWT 297
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
++ +G A+HG EA+ L MR G++PN VTF S+ AC H GLVE+G+ F +M +
Sbjct: 298 SIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYE 357
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+ + P IKH+ CI+D+LGRAG L EA I G+P++ ++I+WR+LL+ C+ +G+V +G++
Sbjct: 358 YNINPEIKHFGCIIDMLGRAGRLCEAEQVIGGLPMEVNSIVWRTLLACCSKYGEVEMGKR 417
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
K +L + E + DFV +SN+ R+ D E RK + + PG ++
Sbjct: 418 AMKKILHTERE--------SGGDFVVVSNMLTELGRFSDAERSRKLLDERNAVKVPGLAL 469
Query: 470 L 470
+
Sbjct: 470 V 470
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 203/335 (60%), Gaps = 19/335 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N + T+I Y+ + D+ + VF+QMP+R A+W+AM+ GY + + L L
Sbjct: 5 NTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGE-----WHSGLAL 59
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF--GACVHGYMEKTFYMPENDVFIGTAL 260
FR+M+V+ G++P T+ VLS +++G L G +HG+ K + E V +GT L
Sbjct: 60 FREMVVN-EGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGW--ELSVDLGTVL 116
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY+KCG L +A +F M+EKNV +WTA+ G A HG G EA+ + + M+D GVKPN
Sbjct: 117 VDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNE 176
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TFT + +AC AGLVEEG F+ ++ ++G+EP I+H+ C+VDL G+AG LEEAY I
Sbjct: 177 MTFTGILSACAQAGLVEEGRKYFNKIE-EYGLEPRIQHFGCMVDLFGKAGLLEEAYEIIN 235
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKV-GKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ ++P+ +LW S LS+C VH L E+V ++L ++PE + +SN+
Sbjct: 236 SMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPE-------NDGGVYTLISNL 288
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+ ++W D E VRK M ++V GSS +++ +
Sbjct: 289 FVLNDKWDDAERVRKLMVNQKVRKARGSSFIRSGS 323
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 13/224 (5%)
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
V++GL D T L CAR SL L +GR IH K G+ +V + T L+ YA
Sbjct: 65 VNEGLRP-DKVTLGSVLSGCARMGSLGLL-VGRSIHGFTAKNGWELSVDLGTVLVDMYAK 122
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+ S +VFD M ++ A+W A+I G +Q K+ A + L +DM GVKP
Sbjct: 123 CGFLKSAFRVFDLMQEKNVASWTALICG-SAQHGYGKE-ALSMFELMQDM-----GVKPN 175
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
+ T +LS +Q GL+E G +E+ P F +VD++ K G L+ A I
Sbjct: 176 EMTFTGILSACAQAGLVEEGRKYFNKIEEYGLEPRIQHF--GCMVDLFGKAGLLEEAYEI 233
Query: 277 FSRMR-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
+ M+ E NV+ W++ + +H + A R+ + + VKP
Sbjct: 234 INSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRT-VKPE 276
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP + ++ YSK G + A L+F +M +++ +W+AM G G+ + + L
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 309 DSM-RDCGVKPNAVTFTSLFAACCHAG----LVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
M + G++P+ VT S+ + C G LV +H F +K G E + + +V
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGF---TAKNGWELSVDLGTVLV 117
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
D+ + G L+ A+ + + + + W +L+ HG
Sbjct: 118 DMYAKCGFLKSAFR-VFDLMQEKNVASWTALICGSAQHG 155
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 204/363 (56%), Gaps = 19/363 (5%)
Query: 110 VFALGSCAR-FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
VFA+ S F +L G+ +H + + G + VA L+ Y + +++ + VFD
Sbjct: 612 VFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFD 671
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ + +WN +I GY + A + LF DML+ KP TM C+L +
Sbjct: 672 HVTNKDIISWNTLIGGY-----SRNNFANESFSLFSDMLLQF---KPNTVTMTCILPAVA 723
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+ LE G +H Y + ++ D + ALVDMY KCG L A ++F R+ +KN+++W
Sbjct: 724 SISSLERGREIHAYALRRGFL--EDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISW 781
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T M G +HG G +A+ L + MR GV+P+ +F+++ ACCH+GL EG F+ M+
Sbjct: 782 TIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRK 841
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
++ +EP +KHY+CIVDLL G+L+EA+ FI +PI+PD+ +W SLL C +H DV L E
Sbjct: 842 EYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAE 901
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KV + +L+PE T +V L+NIYA AERW V+ ++ ++ + + G S
Sbjct: 902 KVADRVFKLEPENTGY--------YVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCS 953
Query: 469 ILQ 471
++
Sbjct: 954 WIE 956
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 130/286 (45%), Gaps = 25/286 (8%)
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
SCAR G H ++ K GF V LI FYA + I + VFD+MP +
Sbjct: 424 SCARD--------GLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQD 475
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+ +WN++I+G S ++ A+ LF M + G + TT++ VL ++
Sbjct: 476 TISWNSVISGCTSNGLNSE-----AIELFVRMWMQ--GHELDSTTLLSVLPACARSHYWF 528
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G VHGY KT + E + AL+DMYS C + IF M +KNV++WTAM T
Sbjct: 529 VGRVVHGYSVKTGLIGETS--LANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITS 586
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWG 351
G ++ LL M G+KP+ TS+ H +E L ++ + G
Sbjct: 587 YTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL----HGFAGDESLKQGKSVHGYAIRNG 642
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+E + + ++++ ++EEA + D I W +L+
Sbjct: 643 MEKLLPVANALMEMYVNCRNMEEA-RLVFDHVTNKDIISWNTLIGG 687
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 131/303 (43%), Gaps = 29/303 (9%)
Query: 115 SCARFC--SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
SC C SL ++ G IH + K G VA LI Y+ + +VFD M
Sbjct: 202 SCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHA 261
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R + +WN+ I+GY S + A+ LF M + G + + T++ VL ++LG
Sbjct: 262 RDAISWNSTISGYFSNGWHDR-----AVDLFSKMWSE--GTEISSVTVLSVLPACAELGF 314
Query: 233 LEFGACVHGYMEKTFYMPE-------NDVFIGTALVDMYSKCGCLDNALLIFSRMREK-N 284
G VHGY K+ + + D +G+ LV MY KCG + +A +F M K N
Sbjct: 315 ELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGN 374
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA-----ACCHAGLVEEG 339
V W + G A + E++ L + M + G+ P+ + L +C GLV G
Sbjct: 375 VHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHG 434
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+ K G + ++ ++ ++ A +P D I W S++S C
Sbjct: 435 YLV------KLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMP-HQDTISWNSVISGCT 487
Query: 400 VHG 402
+G
Sbjct: 488 SNG 490
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 28/289 (9%)
Query: 124 TLWLGRQIHVHV-TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS--ATWNA 180
+L R+ H V G + ++ L+ Y D+ + VFD+MP R + W +
Sbjct: 109 SLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTS 168
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+++ Y KA D + LFR M GV P + CVL + LG + G +H
Sbjct: 169 LMSAYA----KAGDFQ-EGVSLFRQM--QCCGVSPDAHAVSCVLKCIASLGSITEGEVIH 221
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G +EK + AL+ +YS+CGC+++A+ +F M ++ ++W + +G +G
Sbjct: 222 GLLEKLGL--GEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGW 279
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG--LVEEGLHLFDNMKSK--WGVEPHI 356
+ A+ L M G + ++VT S+ AC G LV + +H + +MKS W +E
Sbjct: 280 HDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGY-SMKSGLLWDLE--- 335
Query: 357 KHYSCIVDLLG--------RAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
S I + LG + G + A +P K + +W ++
Sbjct: 336 SVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGG 384
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 127 LGRQIHVHVTKRGFMFNV---------LVATTLIHFYASNKDISSGKKVFDQMPMRSSA- 176
+G+ +H + K G ++++ + + L+ Y D+ S ++VFD MP + +
Sbjct: 317 VGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVH 376
Query: 177 TWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WN ++ GY AK F +L+LF M G+ P + + C+L + L
Sbjct: 377 VWNLIMGGY------AKAAEFEESLLLFEQM--HELGITPDEHALSCLLKCITCLSCARD 428
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G HGY+ K + + V AL+ Y+K +DNA+L+F RM ++ ++W ++ +G
Sbjct: 429 GLVAHGYLVKLGFGTQCAVC--NALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+G +EAI L M G + ++ T S+ AC +
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARS 524
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 223/401 (55%), Gaps = 27/401 (6%)
Query: 65 VFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F P FL+NT+ ++ P +V V+ G+ D FT+ F + +CA
Sbjct: 91 LFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRP-DPFTFPFVIKACAE-- 147
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L+ LW G +H HV K G F V T L+ Y ++ + +F M R WNA
Sbjct: 148 -LAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNA 206
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I C Q+ + AL FR+M ++G+KP T+V LS LG LE G ++
Sbjct: 207 LI-AVCVQTGFSS----KALQSFREM--GMAGIKPDSVTIVSALSACGHLGCLETGEEIY 259
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ + ++++ + A +DM +KCG +D A+ +F M ++NV++W+ + G A++G+
Sbjct: 260 EFAREEGI--DSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGE 317
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM--KSKWGVEPHIKH 358
+A+ L M++ GV+PN VTF ++ +AC H G V EG F+ M ++P +H
Sbjct: 318 SEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEH 377
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y+C+VDLLGR+GHLEEAYNFI +PI+ D +W +LL AC +H ++ LG+ V +L +L
Sbjct: 378 YACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELA 437
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
PE+ + V LSN+YA+A RW VE VR++MK K
Sbjct: 438 PEI--------ASYHVLLSNMYAAAGRWHCVEKVRQRMKKK 470
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/472 (33%), Positives = 240/472 (50%), Gaps = 41/472 (8%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
L RCF + +IT+ + + A L++N + L Q+Y H
Sbjct: 6 LTWRRCFCSVPQHSITSGNDPVTVIATLLSNTTR----IRDLNQIY------------AH 49
Query: 64 FVFTHF--DPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+ T F P F +N +IR PQ+++ ++ + G+L D +T L + +
Sbjct: 50 ILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSMLRAGVLP-DRYTLPIVLKAVS 108
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ ++ LG+Q+H + K G N + I+ Y D S KVFD+ +
Sbjct: 109 QSFAIQ---LGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGS 165
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNA+I+G SQ A D A+V+F DM G +P TMV V+ +G L
Sbjct: 166 WNALISG-LSQGGLAMD----AIVVFVDM--KRHGFEPDGITMVSVMCACGSIGDLYLAL 218
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+H Y+ + + + +L+DMY KCG +D A +F+ M ++NV +WT+M G A+
Sbjct: 219 QLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAM 278
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG EA+ MR+ GVKPN VTF + +AC H G V+EG FD MK+ +G+ P ++
Sbjct: 279 HGHAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQ 338
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C+VDLLGRAG ++A + +P+KP++++W L+ AC HG+V + E V + L L
Sbjct: 339 HYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMAEWVAENLQAL 398
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+P V +V LSNIYA+ W +VE +R MK R+ P SI
Sbjct: 399 EPWNEGV--------YVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPAYSI 442
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 261/512 (50%), Gaps = 73/512 (14%)
Query: 7 HRCFALLKLKAI--------TTPSHIKQIHAQ-LITNALKSPPLYAQLIQLYCTKKAS-- 55
+C +L L +I + +H+KQIHA L+T+ + ++++ +
Sbjct: 7 QQCKPILALASILASIAENCQSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDL 66
Query: 56 PQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVF 111
P + ++ F PN F +NT+IR + P V +F + + + D+FT+ F
Sbjct: 67 PYAQRL----FDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQ-MRQNHVDPDEFTFNF 121
Query: 112 ALGSCARFCSL----STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA------------ 155
+ + +R + STL +IH V K GF ++ V LI+ YA
Sbjct: 122 LIKARSRVHKVHNFPSTLECD-EIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVF 180
Query: 156 -------------------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
++ ++VFD MP + +W AM++GY +C+
Sbjct: 181 NETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGY-----SKANCS 235
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
AL LF +M +G++P + T+V V+S + LG +E G VH Y+ + + V +
Sbjct: 236 REALELFWEM--SDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWM--VSL 291
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
AL++MY+KCGC+D A +F+ M+ K+++TW +M + A HG +A L M + G+
Sbjct: 292 CNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGI 351
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ +TF +L A H GLV+EG LF M+ +G+E I+HY CIVD+LGRAG LEEAY
Sbjct: 352 APDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAY 411
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I+ +PI + I+W +LL+AC ++GDV +GE+V K LL+L+P+ ++ L
Sbjct: 412 ELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLELKPD--------EGGYYILL 463
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+IY ++ R + +R+ M+ PG S
Sbjct: 464 RDIYVASGRTAEANHIRQAMQESGAMKNPGYS 495
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 204/372 (54%), Gaps = 19/372 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+ L F + + + ++ T V L +CA+ SL LG + + G N+ +
Sbjct: 246 EEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE---LGNWVRSWIEDHGLGSNLRLV 302
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI Y+ D+ + +F+ + + +WN MI GY + + AL LFR M
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE-----ALALFRKM- 356
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
S V+P D T V +L + LG L+ G +H Y++K F N + T+L+DMY+KC
Sbjct: 357 -QQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTN-TSLWTSLIDMYAKC 414
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A +F+ M+ K++ +W AM +G+A+HG N A+ L MRD G +P+ +TF +
Sbjct: 415 GNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVL 474
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+AC HAGLVE G F +M + + P ++HY C++DLLGRAG +EA + + +KPD
Sbjct: 475 SACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPD 534
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W SLL AC VHG+V LGE K L +L+PE +V LSNIYA+A RW
Sbjct: 535 GAIWGSLLGACRVHGNVELGEFAAKHLFELEPE--------NPGAYVLLSNIYATAGRWD 586
Query: 448 DVESVRKQMKVK 459
DV +R ++ K
Sbjct: 587 DVARIRTKLNDK 598
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 224/455 (49%), Gaps = 57/455 (12%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNTLI 81
++KQIH+Q+I L + + +C SP + +F + PN F++NT+I
Sbjct: 47 NLKQIHSQIIKTGLHNTQFALSKLIEFCA--ISPFGNLSYALLLFESIEQPNQFIWNTMI 104
Query: 82 RCTPPQDS-VLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R S V ++V L + + +T+ F L SCA+ + G+QIH HV K
Sbjct: 105 RGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE---GKQIHGHVLKL 161
Query: 139 GFMFNVLVATTLIHFYASNKDIS-------------------------------SGKKVF 167
G + V T+LI+ YA N ++ +++F
Sbjct: 162 GLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLF 221
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+++P+R + +WNAMI GY +QS + ++ AL F++M + V P ++TMV VLS
Sbjct: 222 EEIPVRDAVSWNAMIAGY-AQSGRFEE----ALAFFQEM--KRANVAPNESTMVTVLSAC 274
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+Q G LE G V ++E + +++ + AL+DMYSKCG LD A +F + EK++++
Sbjct: 275 AQSGSLELGNWVRSWIED--HGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W M G + EA+ L M+ V+PN VTF S+ AC + G ++ G + +
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVAL 406
K+ + ++ ++D+ + G++E A G +KP ++ W +++S +HG +
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG--MKPKSLGSWNAMISGLAMHGHANM 450
Query: 407 GEKVGKILLQ--LQP-EVTFVDV--ACTSEDFVAL 436
++ + + +P ++TFV V AC+ V L
Sbjct: 451 ALELFRQMRDEGFEPDDITFVGVLSACSHAGLVEL 485
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 58/322 (18%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQM 170
L +C F +L +QIH + K G + LI F A + ++S +F+ +
Sbjct: 39 LSTCKSFQNL------KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+ WN MI G S F +L + GV+P T +L +++
Sbjct: 93 EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRML-------LCGVEPNSYTFPFLLKSCAKV 145
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---------------------- 268
G + G +HG++ K E+D F+ T+L++MY++ G
Sbjct: 146 GATQEGKQIHGHVLKLGL--ESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTA 203
Query: 269 ---------CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
CLD+A +F + ++ ++W AM G A G+ EA+ M+ V PN
Sbjct: 204 LITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPN 263
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW----GVEPHIKHYSCIVDLLGRAGHLEEA 375
T ++ +AC +G +E G N W G+ +++ + ++D+ + G L++A
Sbjct: 264 ESTMVTVLSACAQSGSLELG-----NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318
Query: 376 YNFIMGIPIKPDAILWRSLLSA 397
+ GI + D I W ++
Sbjct: 319 RDLFEGI-CEKDIISWNVMIGG 339
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 25/377 (6%)
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNVLVATTLIHFYA 155
VS +LT A G R + +H +V +RG+ + +++ ++ YA
Sbjct: 266 VSPDVLTLVSLASAIAQGGDGRSA--------KSLHCYVMRRGWDVDDIIAGNAIVDMYA 317
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+I + +++FD MP++ S +WN +I GY ++ N V + G+K
Sbjct: 318 KLSNIEAAQRMFDSMPVQDSVSWNTLITGYM------QNGLANEAVERYGHMQKHEGLKA 371
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T V VL S LG L+ G +H K DV++GT L+D+Y+KCG L A+L
Sbjct: 372 IQGTFVSVLPAYSHLGALQQGMRMHALSIKIGL--NVDVYVGTCLIDLYAKCGKLAEAML 429
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F +M ++ W A+ +G+ +HG G EA+ L M+ G+KP+ VTF SL AAC HAGL
Sbjct: 430 LFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGL 489
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++G FD M+ + + P KHY+C+ D+LGRAG L+EA+NFI +PIKPD+ +W +LL
Sbjct: 490 VDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALL 549
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
AC +HG+V +G+ + L +L PE +V +SN+YA +W V+ VR
Sbjct: 550 GACRIHGNVEMGKVASQNLFELDPENVGY--------YVLMSNMYAKVGKWDGVDEVRSL 601
Query: 456 MKVKRVETEPGSSILQT 472
++ + ++ PG S ++
Sbjct: 602 VRRQNLQKTPGWSSIEV 618
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 136/271 (50%), Gaps = 15/271 (5%)
Query: 130 QIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
Q+H + G + +V + +L+H Y IS KVFD+M R WNAM++G C
Sbjct: 88 QLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRN 147
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
++ A+ A+ LF M+ + GV T+ VL + LG +H Y K +
Sbjct: 148 ARAAE-----AVGLFGRMVGE--GVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVK--H 198
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ ++F+ AL+D+Y K G L+ A +F M ++++TW ++ +G G+ A+++
Sbjct: 199 GLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMF 258
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHA--GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
MR GV P+ +T SL +A G + LH + M+ W V+ I + IVD+
Sbjct: 259 QGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCY-VMRRGWDVDDIIAG-NAIVDMY 316
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ ++E A +P++ D++ W +L++
Sbjct: 317 AKLSNIEAAQRMFDSMPVQ-DSVSWNTLITG 346
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
VF +LV Y + G + A +F M E++V W AM +G+ + + EA+ L M
Sbjct: 103 VFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVG 162
Query: 314 CGVKPNAVTFTSLFAACCHAG--LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV + VT +S+ C G ++ +H++ K G++ + + ++D+ G+ G
Sbjct: 163 EGVAGDTVTVSSVLPMCVLLGDQVLALVMHVY---AVKHGLDKELFVCNALIDVYGKLGM 219
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
LEEA G+ + D + W S++S C G A K+
Sbjct: 220 LEEAQCVFHGMECR-DLVTWNSIISGCEQRGQTAAALKM 257
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 233/426 (54%), Gaps = 36/426 (8%)
Query: 45 LIQLYCTKKASPQSTKIVHFV-FTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLT 103
++ YC + ++ + H + + P + + L C ++ L F + +L
Sbjct: 141 MLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRN--LRFGKAIHSYMLV 198
Query: 104 FDDFTYVFALGSCA---RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
D T + A SCA + S + + + +++ V+++ ++++TT+++ YA N +
Sbjct: 199 SD--TLIDAQVSCALMNMYASCADMEMAEKLYNRVSEK----EIVLSTTMVYGYAKNGKV 252
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+F+ MP + +W+AMI GY SK AL LF DM SGVKP + TM
Sbjct: 253 EIAHSIFNGMPAKDVVSWSAMIAGYAESSKP-----MEALNLFHDM--QRSGVKPDEITM 305
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGCLDNALLIF 277
+ V+S + +G LE C+H ++E +P IG AL+DM+SKCG L AL +F
Sbjct: 306 LSVISACANVGALEKARCIHSFVENHSMCKILP-----IGNALIDMFSKCGSLTLALDVF 360
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
+ M +KNV+TWT++ T A+HG G A+ L ++M+ G++PN VTF L ACCHAGLVE
Sbjct: 361 NAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVE 420
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
EG LF M ++ +EP +HY C+VDLLGRA L +A + I + ++P+ ++W SLL+A
Sbjct: 421 EGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAA 480
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV-ESVRKQM 456
C +HGD+ LG K +L+L P V LSNIYA W DV E + K+
Sbjct: 481 CRMHGDLELGTFAAKKILELDPNHGGAQ--------VLLSNIYAEYGNWNDVKEGLSKKD 532
Query: 457 KVKRVE 462
K+ E
Sbjct: 533 YEKKKE 538
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 143/319 (44%), Gaps = 48/319 (15%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNV------LVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
L + R + G F V V T L+ YA+ + ++VFD MP R
Sbjct: 76 LRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGMPDRDL 135
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
W M++ YC Q++ ++ AL+LF M S V P + VLS + L F
Sbjct: 136 VAWGVMLDCYC-QARNYEE----ALLLFHSM--KRSRVVPDQVIIATVLSTCAHTRNLRF 188
Query: 236 GACVHGYM----------------------------EKTF-YMPENDVFIGTALVDMYSK 266
G +H YM EK + + E ++ + T +V Y+K
Sbjct: 189 GKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAK 248
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
G ++ A IF+ M K+V++W+AM G A K EA+ L M+ GVKP+ +T S+
Sbjct: 249 NGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSV 308
Query: 327 FAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+AC + G +E+ +H F S + P + ++D+ + G L A + +P
Sbjct: 309 ISACANVGALEKARCIHSFVENHSMCKILP---IGNALIDMFSKCGSLTLALDVFNAMPQ 365
Query: 385 KPDAILWRSLLSACNVHGD 403
K + + W S+++A +HGD
Sbjct: 366 K-NVVTWTSIITASAMHGD 383
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 205/346 (59%), Gaps = 21/346 (6%)
Query: 128 GRQIHVHVTKR----GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
GR++H ++ K G +V + LI Y+ + + G++VFD+M R+ +W AMIN
Sbjct: 248 GRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMIN 307
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY + AL LFRDM V + G++P ++V VL S L G +HG+
Sbjct: 308 GYVENGDSDE-----ALSLFRDMQV-IDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFA 361
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGN 302
+ N+V + AL+DMYSKCG LD+A +F K+ ++W++M +G +HGKG
Sbjct: 362 VRKEL--NNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQ 419
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EAI L D M G++P+ +T + +AC +GLV EGL+++ ++ + +G+EP ++ ++CI
Sbjct: 420 EAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACI 479
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VD+LGRAG L+ A +FI +P++P +W +L+S +HGD+ + E + L+QL+PE
Sbjct: 480 VDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPE-- 537
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
++V++SN+YAS+ RW V VR+ MK KR+ PG S
Sbjct: 538 ------NPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCS 577
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 207/436 (47%), Gaps = 34/436 (7%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+Q H+++++ L L A +LI Y + S VF N+FL+N+LI
Sbjct: 43 RQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHS----RLVFDSLQHKNVFLWNSLING 98
Query: 84 TPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKR 138
++ +F S +L DDFT L + ++ S L L+ G+ IH +
Sbjct: 99 YAKNRLYNEAFQLFNQMCSSDVLP-DDFT----LSTLSKVSSELGALFSGKSIHGKSIRI 153
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF+ + +VA +++ Y + +KVFD+M +R+S +WN +I GY + +C F
Sbjct: 154 GFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAV----SGNCNFR 209
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSV-SSQLGLLEFGACVHGYMEKTFYM--PENDVF 255
+ + V+P T+ +L + G ++G +H Y+ K + ++DV
Sbjct: 210 EETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVH 269
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC- 314
+G L+DMYS+ + +F RM+ +NV +WTAM G +G +EA+ L M+
Sbjct: 270 LGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVID 329
Query: 315 GVKPNAVTFTSLFAACCH-AGLVE-EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
G++PN V+ S+ AC +GL+ +H F K + + + ++D+ + G L
Sbjct: 330 GIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKE---LNNEVSLCNALIDMYSKCGSL 386
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--LQPE-VTFVDV--A 427
+ A + DAI W S++S +HG + +LQ ++P+ +T V + A
Sbjct: 387 DSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSA 446
Query: 428 CTSEDFVALS-NIYAS 442
C+ V NIY+S
Sbjct: 447 CSRSGLVNEGLNIYSS 462
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 29/238 (12%)
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
+L L RQ H + G N L+AT LI YA + + VFD + ++ WN++IN
Sbjct: 38 SLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97
Query: 184 GYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
GY AK+ +N A LF M S V P D T+ + VSS+LG L G +HG
Sbjct: 98 GY------AKNRLYNEAFQLFNQMC--SSDVLPDDFTLSTLSKVSSELGALFSGKSIHGK 149
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ ++ +D + +++ MY KCG + + +F M +N +W + G A+ G N
Sbjct: 150 SIRIGFV--SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCN 207
Query: 303 ---EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW--GVEPH 355
E + M+ V+P+A T +SL C D K KW G E H
Sbjct: 208 FREETWEFVKQMQMDEVRPDAYTISSLLPLC-------------DGDKGKWDYGRELH 252
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 222/411 (54%), Gaps = 26/411 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F D P+L +N +I + +V +F ++ G + T V G +
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNSSTLV---GLIPVYL 326
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L L R I K G + V+T L Y ++ +++FD+ P +S A+WNA
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+GY + A+ LF++M+ +S P T+ +LS +QLG L G VH
Sbjct: 387 MISGYTQNGLTDR-----AISLFQEMMPQLS---PNPVTVTSILSACAQLGALSIGKWVH 438
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G ++ E++V++ TALVDMY+KCG + A +F M +KNV+TW AM TG +HG
Sbjct: 439 GLIKSERL--ESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA++L M G+ P VTF S+ AC H+GLV EG +F +M + +G +P +HY+
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VD+LGRAG L A FI +P++P +W +LL AC +H + + K L QL PE
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V +V LSNIY++ +P SVR+ +K +++ PG ++++
Sbjct: 617 ----NVGY----YVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIE 659
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 109/432 (25%), Positives = 189/432 (43%), Gaps = 25/432 (5%)
Query: 3 SLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIV 62
++ G R F L L TT S + QI AQLI + + I K + V
Sbjct: 10 AIRGQRFFLTL-LNNATTLSQLLQIQAQLILHGIHYD---LSSITKLTHKFFDLGAVAHV 65
Query: 63 HFVFTHFDPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
+F P+LFLFN LIR P+ S+ ++ + K L D+FTY FA+ + +R
Sbjct: 66 RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASR 125
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
L +G +H H G N+ V + ++ Y +KVFD MP R + W
Sbjct: 126 ---LEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N MI+G+ S +++ +F DML DV G+ TT+ VL+ ++L G
Sbjct: 183 NTMISGFSRNSYFE-----DSIRVFVDML-DV-GLSFDSTTLATVLTAVAELQEYRLGMG 235
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ K +DV++ T L+ +YSKCG ++F ++ + +++++ AM +G +
Sbjct: 236 IQCLASKKGL--HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+ A+ L + G + N+ T L ++ L N+ K G+
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLS-RLIQNLSLKIGIILQPSV 352
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ + + R ++ A P K A W +++S +G L ++ + ++
Sbjct: 353 STALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMISGYTQNG---LTDRAISLFQEMM 408
Query: 419 PEVTFVDVACTS 430
P+++ V TS
Sbjct: 409 PQLSPNPVTVTS 420
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 222/411 (54%), Gaps = 26/411 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F D P+L +N +I + +V +F ++ G + T V G +
Sbjct: 271 LFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNSSTLV---GLIPVYL 326
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L L R I K G + V+T L Y ++ +++FD+ P +S A+WNA
Sbjct: 327 PFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNA 386
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+GY + A+ LF++M+ +S P T+ +LS +QLG L G VH
Sbjct: 387 MISGYTQNGLTDR-----AISLFQEMMPQLS---PNPVTVTSILSACAQLGALSIGKWVH 438
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G ++ E++V++ TALVDMY+KCG + A +F M +KNV+TW AM TG +HG
Sbjct: 439 GLIKSERL--ESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGH 496
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA++L M G+ P VTF S+ AC H+GLV EG +F +M + +G +P +HY+
Sbjct: 497 GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYA 556
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VD+LGRAG L A FI +P++P +W +LL AC +H + + K L QL PE
Sbjct: 557 CMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPE 616
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V +V LSNIY++ +P SVR+ +K +++ PG ++++
Sbjct: 617 ----NVGY----YVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIE 659
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 188/432 (43%), Gaps = 25/432 (5%)
Query: 3 SLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIV 62
++ G R F L L TT S + QI AQLI + + I K + V
Sbjct: 10 AIRGQRFFLTL-LNNATTLSQLLQIQAQLILHGIHYD---LSSITKLTHKFFDLGAVAHV 65
Query: 63 HFVFTHFDPPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
+F P+LFLFN LIR P+ S+ ++ + L D+FTY FA+ + +R
Sbjct: 66 RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASR 125
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
L +G +H H G N+ V + ++ Y +KVFD MP R + W
Sbjct: 126 ---LEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLW 182
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N MI+G+ S +++ +F DML DV G+ TT+ VL+ ++L G
Sbjct: 183 NTMISGFSRNSYFE-----DSIRVFVDML-DV-GLSFDSTTLATVLTAVAELQEYRLGMG 235
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ K +DV++ T L+ +YSKCG ++F ++ + +++++ AM +G +
Sbjct: 236 IQCLASKKGL--HSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFN 293
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+ A+ L + G + N+ T L ++ L N+ K G+
Sbjct: 294 HETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLS-RLIQNLSLKIGIILQPSV 352
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ + + R ++ A P K A W +++S +G L ++ + ++
Sbjct: 353 STALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMISGYTQNG---LTDRAISLFQEMM 408
Query: 419 PEVTFVDVACTS 430
P+++ V TS
Sbjct: 409 PQLSPNPVTVTS 420
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 197/352 (55%), Gaps = 25/352 (7%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA-TWN 179
+ L LGR+ H V +R +V+ L+ YA D ++ + F +MP++ + +WN
Sbjct: 165 QIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWN 224
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
M++ + + + AL LF++M + V+P D T V L +QLG L+ G +
Sbjct: 225 TMMSAFARAGELEE-----ALALFQEM--QAAAVRPDDATFVAALGACAQLGALDTGRWL 277
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H YM + + D +G AL+DMY+KCG +D A +F M ++V T+T+M G+A+HG
Sbjct: 278 HAYMGRMGH--SADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHG 335
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+G +A+ L M+ GV PN VT + ACCHAGLVEEGL + M EP I+HY
Sbjct: 336 RGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMP-----EPRIEHY 390
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VD+LGRAG L++A I +P+ DA++W SLL+AC HGDV E+V ++
Sbjct: 391 GCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVERAERV------MRR 444
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V D D+V +SN YAS R + VR QM+ ++ PG S+++
Sbjct: 445 RVADADAG----DYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIE 492
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 236/449 (52%), Gaps = 67/449 (14%)
Query: 68 HFDPPNL--FLFNTLIRCT-------PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
H PN+ F++N LIR + P L + + D T+ F L S
Sbjct: 16 HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQS--- 72
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------NKDISS- 162
++T GRQ+H + G + V T+LI+ Y+S D+ S
Sbjct: 73 ---INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSW 129
Query: 163 ---------------GKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRD 205
+K+FDQMP ++ +W+ MI+GY C + K A L LFR
Sbjct: 130 NAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAA-------LSLFRS 182
Query: 206 M-LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
+ ++ S ++P + TM VLS ++LG L+ G VH Y++KT + DV +GT+L+DMY
Sbjct: 183 LQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGM--KIDVVLGTSLIDMY 240
Query: 265 SKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
+KCG ++ A IF + EK+V+ W+AM T ++HG E + L M + GV+PNAVTF
Sbjct: 241 AKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTF 300
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
++ AC H GLV EG F M +++GV P I+HY C+VDL RAG +E+A+N + +P
Sbjct: 301 VAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMP 360
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
++PD ++W +LL+ +HGDV E LL+L P S +V LSN+YA
Sbjct: 361 MEPDVMIWGALLNGARIHGDVETCEIAITKLLELDP--------ANSSAYVLLSNVYAKL 412
Query: 444 ERWPDVESVRKQMKVKRVETEPGSSILQT 472
RW +V +R M+V+ ++ PG S+++
Sbjct: 413 GRWREVRHLRDLMEVRGIKKLPGCSLVEV 441
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/367 (38%), Positives = 211/367 (57%), Gaps = 23/367 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV AL S R LS LG+ IH + KR + ++ LI Y + +S VF
Sbjct: 206 TYVCALVSSGRVGCLS---LGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVF 262
Query: 168 DQMPMRSSATWNAMING--YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
++ + +WN+MI+G +C +S +A + LF M+ SG+KP + VLS
Sbjct: 263 GELQKKDKVSWNSMISGLVHCERSNEA-------IELF-SMMQTSSGIKPDGHILTSVLS 314
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LG +++G VH Y+ + D IGTA+VDMY+KCG ++ AL IF+ +R KNV
Sbjct: 315 ACASLGAVDYGRWVHEYVLSAGI--KWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNV 372
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
TW A+ G+AIHG G+E++R + M G KPN VTF ++ ACCH GLV+EG F
Sbjct: 373 FTWNALLGGLAIHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHK 432
Query: 346 MKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MK++ + + P ++HY C++DL RAG L+EA I +P+KPD + ++LSAC G +
Sbjct: 433 MKTREYNLSPKLEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSRGTL 492
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
++ K +L E+ F D S +V LSNI+A+ RW DV +R+ MKVK +
Sbjct: 493 M---ELPKEILDSFLEMEFED----SGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKV 545
Query: 465 PGSSILQ 471
PGSS ++
Sbjct: 546 PGSSSIE 552
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 197/388 (50%), Gaps = 34/388 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKA--SPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQI QLI+ + L+ + + K A + S+ I+H + + F +NTL+
Sbjct: 23 KQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSIRSVLSS---FSYNTLLS 79
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
C P+ ++ V+ +VS G + D FT+ +C +F S + G+QIH VTK
Sbjct: 80 SYAVCDKPRMTIFVYRVFVSNGF-SPDMFTFPPVFKACGKF---SGIREGKQIHGTVTKM 135
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF ++ V +L+HFY + + KVFDQMP+R +W +I G+ +++ K+
Sbjct: 136 GFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGF-TRTGLYKE---- 190
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL F M V+P T VC L S ++G L G +HG + K + + G
Sbjct: 191 ALDTFSKM-----DVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLET--GN 243
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVK 317
AL+DMY KC L +A+ +F +++K+ ++W +M +G+ + NEAI L M+ G+K
Sbjct: 244 ALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIK 303
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEE 374
P+ TS+ +AC G V+ G + + + S KW + HI + IVD+ + G++E
Sbjct: 304 PDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKW--DTHIG--TAIVDMYAKCGYIET 359
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHG 402
A GI + + W +LL +HG
Sbjct: 360 ALKIFNGIR-RKNVFTWNALLGGLAIHG 386
>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 721
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 199/354 (56%), Gaps = 18/354 (5%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA---SNKDISSGKKVFDQMPMRSSAT 177
SL L GRQ H + K GF N V + LI FY+ +S +KVF ++
Sbjct: 252 SLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVL 311
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN MI+GY + +++ A+ FR M G +P D + VCV S S L G
Sbjct: 312 WNTMISGYSMNEEHSEE----AVKSFRQM--QRIGHRPDDCSFVCVTSACSNLSSPSQGK 365
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HG K+ +P N + + AL+ +Y K G L +A +F RM E N +++ M G A
Sbjct: 366 QIHGLAIKS-NIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQ 424
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG G EA+RL M D G+ PN +TF ++ +AC H G V+EG F+ MK + +EP +
Sbjct: 425 HGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAE 484
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HYSC++DLLGRAG LEEA FI +P KP ++ W +LL AC H ++AL E+ K L+ +
Sbjct: 485 HYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVM 544
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
QP +A T +V L+N+YA A +W ++ SVRK M+ KR+ +PG S ++
Sbjct: 545 QP------LAATP--YVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIE 590
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 45/293 (15%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV ++ YA + I +++FD+ P + ++N +I+GY + A+VL
Sbjct: 73 NVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVA-----AMVL 127
Query: 203 F---RDMLVDVSGVKPTDTTMVCVLSVS--SQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
F R++ +V G + C V QL Y +
Sbjct: 128 FKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSS-----------VN 176
Query: 258 TALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
A V YSK G L A+ +F M ++ ++W +M H +G +A+ L M G
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236
Query: 317 KPNAVTFTSLFAACC-----------HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
K + T S+ A H L++ G H ++ S I YS
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGL-----IDFYS---KC 288
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
GR G + ++ I + PD +LW +++S +++ + + E+ K Q+Q
Sbjct: 289 GGRDG-MSDSEKVFQEI-LSPDLVLWNTMISGYSMNEEHS--EEAVKSFRQMQ 337
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 73/200 (36%), Gaps = 41/200 (20%)
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS---- 310
++ V++YSKCGCL A F E NV ++ + A K + A +L D
Sbjct: 44 YLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQP 103
Query: 311 ---------------------------MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
MR+ G + + T + L AACC + + LH F
Sbjct: 104 DTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCF 163
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
G + + + V + G L EA + G+ D + W S++ A H
Sbjct: 164 ---AVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQH-- 218
Query: 404 VALGEKVGKILLQLQPEVTF 423
K G L L E+ F
Sbjct: 219 -----KEGAKALALYKEMIF 233
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 214/396 (54%), Gaps = 43/396 (10%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ V AL +CA ++ +G+ IH K G + + LI+ Y+ DI +
Sbjct: 375 DEVVAVSALSACANLLVVN---MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVAR 431
Query: 165 KVFDQMPMRSSATWNAMINGY--CSQSKKAK------------------------DCAFN 198
K+FD+ + +WN+MI+GY C+ AK D
Sbjct: 432 KLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDE 491
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
L LF++M +SG KP +TT+V V+S ++L LE G VH Y+++ +V +GT
Sbjct: 492 TLALFQEM--QMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI--NVILGT 547
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
L+DMY KCGC++ AL +F M EK + TW A+ G+A++G ++ + +M+ C V P
Sbjct: 548 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 607
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +TF + AC H GLV+EG H F +M ++P++KHY C+VDLLGRAG L+EA
Sbjct: 608 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 667
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-VALS 437
+ +P+ PD W +LL AC HGD +G +VG+ L++LQP+ + F V LS
Sbjct: 668 LNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPD---------HDGFHVLLS 718
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
NIYAS +W DV +R M RV PG S+++
Sbjct: 719 NIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 754
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 176/423 (41%), Gaps = 61/423 (14%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH--FVFTHFDPPNLFL 76
+P ++ +++N L + L+ C+ + S K VH + FD ++++
Sbjct: 192 NSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS-DVYV 250
Query: 77 FNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLI C + D+ VF D ++ L A + + + + I+
Sbjct: 251 RNTLINCFSVCSNMTDACRVF-----NESSVLDSVSWNSIL---AGYIEIGNVEEAKHIY 302
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ +R +++ + ++I + + K+FD+M + TW+A+I C Q +
Sbjct: 303 HQMPER----SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIA--CFQQNEM 356
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
+ A V + GV + V LS + L ++ G +H K E+
Sbjct: 357 YEEAIRTFVGMHKI-----GVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG--TES 409
Query: 253 DVFIGTALVDMYSKCG-------------------------------CLDNALLIFSRMR 281
+ + AL+ MYSKCG +DNA IF M
Sbjct: 410 YINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMP 469
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
EK+V++W++M +G A + +E + L M+ G KP+ T S+ +AC +E+G
Sbjct: 470 EKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKW 529
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ +K G+ ++ + ++D+ + G +E A G+ I+ W +L+ ++
Sbjct: 530 VHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILGLAMN 587
Query: 402 GDV 404
G V
Sbjct: 588 GLV 590
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/496 (30%), Positives = 257/496 (51%), Gaps = 49/496 (9%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQL-YCTKKASPQSTKIVHFVFTHF- 69
LL+ + + +I AQ+I + + P + +I + + +S + + +F HF
Sbjct: 28 LLRCATQLSMRQLFEIQAQIIASPI--PSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFL 85
Query: 70 DPPNLFLFNTLIRCTPPQDSV-LVFAYWVSKGLL----TFDDFTYVFALGSCARFCSLST 124
PN+F +N L++ ++ +Y+ ++ +L D++T+ L +CA L+
Sbjct: 86 SFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA---GLAQ 142
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
+ G+++H VTK G N+ V +L+ Y +K+FD+M +R +WN +I+G
Sbjct: 143 VLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISG 202
Query: 185 YCSQ-------------------------SKKAKDCAF-NALVLFRDMLVDVSGVKPTDT 218
YC S A++ + +A+ LFR M + G+ P D
Sbjct: 203 YCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHE-GGLAPNDV 261
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+V VLS + LG L+ G +H ++ + E +F+G AL DMY+KCGC+ A +F
Sbjct: 262 TLVSVLSACAHLGALDLGKWIHRFIRRN--KIEVGLFLGNALADMYAKCGCVLEAKGVFH 319
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M E++V++W+ + G+A++G NEA M + G++PN ++F L AC HAGLV++
Sbjct: 320 EMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDK 379
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
GL FD M +G+ P I+HY C+VDLL RAG L++A + I +P++P+ I+W +LL C
Sbjct: 380 GLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGC 439
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
++ D GE+V +L+L S V L+N+YAS R D S R +M+
Sbjct: 440 RIYKDAERGERVVWRILELDSN--------HSGSLVYLANVYASMGRLDDAASCRLRMRD 491
Query: 459 KRVETEPGSSILQTTT 474
+ PG S ++
Sbjct: 492 NKSMKTPGCSWIEINN 507
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 239/461 (51%), Gaps = 26/461 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +++IHA +I + L A + +C S S +F + P
Sbjct: 11 LQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSG-SLAYAQLLFHQMECPQT 69
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+N++IR + P D+++ + V D FT+ F L +C R + ++
Sbjct: 70 EAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKC---KE 126
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H V + G+ +V+V T L+ Y++ + ++VFD+MP R WNAMI+ + Q
Sbjct: 127 VHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQQGL 186
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ A R VDV G T+V ++S + LG L G +H + +
Sbjct: 187 HQE--ALQTYNQMRSENVDVDGF-----TLVGLISSCAHLGALNIGVQMHRFARENGL-- 237
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ +++G AL+DMY+KCG LD A+LIF RM+ K++ TW +M G +HG+G+EAI
Sbjct: 238 DQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQ 297
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M + ++PN VTF L C H GLV+EG+ F+ M SK+ ++P +KHY C+VDL GRAG
Sbjct: 298 MLEARIQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAG 357
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++A I+ D++LWR LL +C +H +V +GE L +L A ++
Sbjct: 358 KLDKALE-IVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELG--------ATSA 408
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D + L+ IYA + V +RK +K + +T PG S ++
Sbjct: 409 GDCILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIE 449
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 205/340 (60%), Gaps = 19/340 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ T++ YA + +K+FD+MP R++ATW +MI G D AL +
Sbjct: 169 NVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQS-----DHCEEALRV 223
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F DM+ GV P + +V +S +QL +E G VHGY E+ + V + TA+VD
Sbjct: 224 FSDMVA--CGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAV-LATAIVD 280
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG + +A+ +F+ M +N+ +W +M G+A++G +A+ L M+ GV+PN +T
Sbjct: 281 MYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLAMNGSERQALSLFWKMQLAGVRPNDIT 340
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L +AC H+GLV+EG LF M + +G++P +HY +VDLLGR+GH+ EA +F+ +
Sbjct: 341 FIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSM 400
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P LW +L AC +HG+V LGE+V K L++L+P+ ++ LSNIYA+
Sbjct: 401 PVEPHPGLWGALAGACKIHGEVELGEEVAKKLIELEPQ--------HGSRYILLSNIYAT 452
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSIL---QTTTHYTLD 479
+ RW D+ +VR+ +K ++V G++I+ ++ Y +D
Sbjct: 453 SNRWDDMANVRRILKDRKVPKGTGNAIVGNDSQSSGYEID 492
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 1/154 (0%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MPE +V ++ Y++ G L A +F RM +N TW +M TG+ EA+R+
Sbjct: 165 MPEKNVVSWNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVF 224
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M CGV PN S +AC +E G + + + + IVD+ G+
Sbjct: 225 SDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGK 284
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G + +A +P++ + W S+++ ++G
Sbjct: 285 CGSIRDAVRVFAAMPVR-NIYSWNSMIAGLAMNG 317
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/458 (31%), Positives = 244/458 (53%), Gaps = 35/458 (7%)
Query: 24 IKQIHAQLITNALKSPP-LYAQLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
IK IHAQ+I + P L A+L+ Y C + + K VF ++F++NT+
Sbjct: 23 IKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARK----VFDCLPDRDVFVWNTI 78
Query: 81 IR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I+ P +++ ++ Y G+ + +T+ F L +C ++ G+ IH HV
Sbjct: 79 IQGYANLGPFMEALNIYEYMRCSGVAA-NRYTFPFVLKACG---AMKDGKKGQAIHGHVV 134
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K G ++ V L+ FYA +I + ++VFD + + TWN+MI+GY CA
Sbjct: 135 KHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAING-----CA 189
Query: 197 FNALVLFRDMLVDVSG---VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
+ALVLF +ML V G P T+V +L +Q ++ G +H Y+ K+ E D
Sbjct: 190 DDALVLFHNML-QVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGI--ELD 246
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+G+ L+ MY+ CG L++A +F R+ +KN++ W A+ +HG +EA+++ + D
Sbjct: 247 AALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLID 306
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
G+ P+ V F L +A HAG+V EG+ LF+ M +GVE +HY+ +VD+LGRAG L
Sbjct: 307 SGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKM-GDYGVEKSSEHYASVVDILGRAGFLH 365
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
EA F+ +P++P ++ +LL AC +H ++ L E++ + L L P+ + +
Sbjct: 366 EAVEFVKNMPVQPGKDVYGALLGACRIHNNIELAEEIAEKLFVLDPD--------NAGRY 417
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ L +Y A +W + +RK +K K + G S ++
Sbjct: 418 IILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIE 455
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 211/360 (58%), Gaps = 18/360 (5%)
Query: 113 LGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
LGS R C+ L+ L GR++H ++ K G + ++L+ TL+ YA I + FD+M
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMN 374
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
+ S +++A+++G C Q+ A AL +FR ++ +SG+ P TTM+ VL S L
Sbjct: 375 PKDSVSFSAIVSG-CVQNGNAA----VALSIFR--MMQLSGIDPDLTTMLGVLPACSHLA 427
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
L+ G C HGY+ + D I AL+DMYSKCG + A +F+RM ++++W AM
Sbjct: 428 ALQHGFCSHGYLIVRGF--ATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G IHG G EA+ L + G+KP+ +TF L ++C H+GLV EG FD M +
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ P ++H C+VD+LGRAG ++EA++FI +P +PD +W +LLSAC +H ++ LGE+V
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVS 605
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
K + L PE T +FV LSNIY++A RW D +R K ++ PG S ++
Sbjct: 606 KKIQSLGPEST--------GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 657
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 194/425 (45%), Gaps = 32/425 (7%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
H A ++ K++T I Q + +NA S + +L +LY S + +F
Sbjct: 13 HLLEACIQSKSLTEAKKIHQHFLKNTSNADSS--VLHKLTRLY----LSCNQVVLARRLF 66
Query: 67 THFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
P++ L+N +IR P D + + + + + +TY F L +C+ ++
Sbjct: 67 DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G +IH H G +V V T L+ FYA + +++F M R WNAMI
Sbjct: 127 D---GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
G CS D A+ L M + G+ P +T+V VL + L G +HGY
Sbjct: 184 G-CSLYGLCDD----AVQLI--MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYC 236
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ + +N V +GT L+DMY+KC CL A IF M +N ++W+AM G E
Sbjct: 237 VRRSF--DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKE 294
Query: 304 AIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHY 359
A+ L D M +D + P VT S+ AC + G LH + K G I
Sbjct: 295 ALELFDQMILKD-AMDPTPVTLGSVLRACAKLTDLSRGRKLHCY---IIKLGSVLDILLG 350
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI--LLQL 417
+ ++ + + G +++A F + K D++ + +++S C +G+ A+ + ++ L +
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDEMNPK-DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409
Query: 418 QPEVT 422
P++T
Sbjct: 410 DPDLT 414
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 14/233 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
Y+ L +C + SL+ ++IH H K + V L Y S + +++F
Sbjct: 10 NYLHLLEACIQSKSLTE---AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
D++P S WN +I Y A + F+ A+ L+ ML GV+P T VL
Sbjct: 67 DEIPNPSVILWNQIIRAY------AWNGPFDGAIDLYHSMLH--LGVRPNKYTYPFVLKA 118
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S L +E G +H + K F + E+DVF+ TALVD Y+KCG L A +FS M ++V+
Sbjct: 119 CSGLLAIEDGVEIHSH-AKMFGL-ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
W AM G +++G ++A++L+ M++ G+ PN+ T + A + G
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 255/532 (47%), Gaps = 81/532 (15%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
LL +++ T+ +KQI A + AL S + +C S H +F+
Sbjct: 54 LLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINH-AHLLFSQLQN 112
Query: 72 PNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PN +++NT+IR Q L F V KG+ D ++VFAL +C +F +
Sbjct: 113 PNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGV-EMDCRSFVFALKACEQFLGVLE--- 168
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYA---------------SNKDISS---------- 162
G+ +H V K GF++ +LV L+HFY S +D+ S
Sbjct: 169 GKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSK 228
Query: 163 ------GKKVFDQMPMRSSATWNAM----INGYCSQSK------------KAKDC--AFN 198
K+FD M M N + + CSQ K ++ + N
Sbjct: 229 HKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLN 288
Query: 199 ALVLFRDMLV------------DVSGVK--PTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
+ DM V D G P + T+ CVL V QLG L+ G +H
Sbjct: 289 LMNAILDMYVKCGCLDSAREIFDTMGAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYV 348
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ Y E V + AL+DMY+KCG + A +F+ M E+N+++W +M T A HG +A
Sbjct: 349 RMRY-NEISVILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQA 407
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ + + M G KP+ +T + +AC H GLV EG F NMK K+G+EP +HY+C++D
Sbjct: 408 LSVFERMISGGFKPDDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMID 467
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LLGR G LE+AY I +P++P A W +L+ AC +HG+V + + LL+L PE + +
Sbjct: 468 LLGRVGLLEDAYELITKMPMEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGI 527
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476
+V L+NI AS RW DV+ R+ M+ +RV+ PG SI++ +
Sbjct: 528 --------YVLLANICASGRRWGDVKMARRMMRERRVKKIPGRSIVEVEGQF 571
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 241/481 (50%), Gaps = 42/481 (8%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T SH++Q ++T L + L+ + AS + + VF P++F +N
Sbjct: 41 TNLSHLQQTQGFMLTRGLDQDDI---LLARFIYTSASLGLSSYAYSVFISNHRPSIFFYN 97
Query: 79 TLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+I + + + + LL +Y F A C LS + +G+QIH
Sbjct: 98 NVIWALSSSNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVC-LSAVHVGKQIHCQAIVS 156
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-----SQSKKAK 193
G + V T+L+ Y+S +SS +K+FD + + WNAM+ GY S ++
Sbjct: 157 GLDSHPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLF 216
Query: 194 DC-----------------------AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+C A+ LFR ML+ V+P + ++ VLS + L
Sbjct: 217 ECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQ--NVQPDEIAILAVLSACADL 274
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G L+ G +H Y+EK V + +L+DMY+K G + A +F M+ K ++TWT
Sbjct: 275 GALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTT 334
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ +G+A+HG G EA+ + M VKPN VT ++ +AC H GLVE G ++F +M+SK+
Sbjct: 335 VISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKY 394
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
G+EP I+HY C++DLLGRAG+L+EA + +P + +A +W SLLSA N +GD AL +
Sbjct: 395 GIEPKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEA 454
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ L L+P ++ LSN YA+ W + VRK M+ E PG S +
Sbjct: 455 LRHLSVLEPH--------NCGNYSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFV 506
Query: 471 Q 471
+
Sbjct: 507 E 507
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 200/341 (58%), Gaps = 20/341 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+++ YASN D+ + +++F++MP R+ +WNA+I GY C L
Sbjct: 178 DVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNG-----CFSEVLSA 232
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F+ MLVD + V P D T+V VLS ++LG L+ G VH Y E Y + +V++ AL+D
Sbjct: 233 FKRMLVDGT-VVPNDATLVNVLSACARLGALDLGKWVHVYAESHGY--KGNVYVRNALMD 289
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY+KCG ++ AL +F M K++++W + G+A+HG G +A+ L M+ G P+ +T
Sbjct: 290 MYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGIT 349
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + AC H GLVE+G F +M + + P I+HY CIVDLLGRAG L A +FI +
Sbjct: 350 FIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKM 409
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PI+ DA++W +LL AC V+ +V L E + L++ +P+ ++V LSNIY
Sbjct: 410 PIEADAVIWAALLGACRVYKNVELAELALEKLIEFEPK--------NPANYVMLSNIYGD 461
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTTTH----YTLD 479
RW DV ++ M+ + PG S+++ + Y+LD
Sbjct: 462 FGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVEFYSLD 502
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+ + KVFDQ+P +++ WNAM GY SQ++ KD +VLFR M V P T
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGY-SQNESHKD----VIVLFRQM--KGLDVMPNCFT 53
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+L ++ L+ G VH ++ K+ + + F+ T L+DMY+ G + A +F
Sbjct: 54 FPVILKSCVKINALKEGEEVHCFVIKSGFRA--NPFVATTLIDMYASGGAIHAAYRVFGE 111
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E+NV+ WTAM G A RL D + + V + ++ + A V
Sbjct: 112 MIERNVIAWTAMINGYITCCDLVTARRLF----DLAPERDIVLWNTMISGYIEAKDVIRA 167
Query: 340 LHLFDNMKSK 349
LFD M +K
Sbjct: 168 RELFDKMPNK 177
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 16/232 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F N+F +N LI R + + F + G + +D T V L +CAR
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACAR-- 258
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LG+ +HV+ G+ NV V L+ YA + + VF M + +WN
Sbjct: 259 -LGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNT 317
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I G A +AL LF M ++G P T + +L + +GL+E G
Sbjct: 318 IIGGLAVHGHGA-----DALNLFSHM--KIAGENPDGITFIGILCACTHMGLVEDGFSYF 370
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAM 291
M + + G +VD+ + G L +A+ +M E + + W A+
Sbjct: 371 KSMTDDYSIVPRIEHYG-CIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAAL 421
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 209/370 (56%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ TYV L +CA S+ LGRQ+H V GF N+ + LI Y+ ++ +
Sbjct: 195 DESTYVTVLSACAHSGSIE---LGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETAC 251
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F + + +WN +I GY + + AL+LF++ML SG P D TM+ VL
Sbjct: 252 GLFQGLSYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGETPNDVTMLSVL 304
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ M K+
Sbjct: 305 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 364
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ + + L MR G++P+ +TF L +AC H+G+++ G H+F
Sbjct: 365 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFR 424
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 425 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 484
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E + L++++PE ++ LSNIYASA RW DV +R + K ++
Sbjct: 485 ELAESFAQNLIKIEPE--------NPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKV 536
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 537 PGCSSIEVDS 546
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 123/423 (29%), Positives = 194/423 (45%), Gaps = 85/423 (20%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF PN ++NT+IR + P S+ ++ VS GLL + +T+ F L SCA+
Sbjct: 20 VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLP-NSYTFPFLLKSCAKS- 77
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF--------------------------- 153
T G+QIH V K GF ++ V T+LI
Sbjct: 78 --KTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTA 135
Query: 154 ----YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
YAS DI S +K+FD++P++ +WNAMI+GY C AL LF +M+
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETG-----CYKEALELFEEMM-- 188
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
V+P ++T V VLS + G +E G VH +++ + ++++ I AL+D+YSKCG
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGF--DSNLKIVNALIDLYSKCGE 246
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ A +F + K+V++W + G EA+ L M G PN VT S+ A
Sbjct: 247 VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPA 306
Query: 330 CCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN---------- 377
C H G ++ G +H++ + + K GV + ++D+ + G +E A+
Sbjct: 307 CAHLGAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSL 365
Query: 378 -----FIMG-------------------IPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
I G I I+PD I + LLSAC+ G + LG + +
Sbjct: 366 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 425
Query: 414 LLQ 416
+ Q
Sbjct: 426 MTQ 428
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F ++E N L W M G A+ ++ L M G+ PN+ TF L +C
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
+ EG + + K G + + ++ ++ + + LE+AY + D + +
Sbjct: 77 SKTFTEGQQIHGQVL-KLGFDLDLYVHTSLISMYVQNWRLEDAYK-VFDRSSHRDVVSYT 134
Query: 393 SLLSACNVHGDVALGEKV 410
+L++ GD+ +K+
Sbjct: 135 ALITGYASRGDIRSAQKL 152
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 212/376 (56%), Gaps = 20/376 (5%)
Query: 101 LLTFDDFTYVFA--LGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157
L+ DD + A L + R C+ L+ L G +H + K GF+ +++V TL+ YA
Sbjct: 314 LMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKC 373
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
I+ + F++M +R + ++ A+I+GY + L +F +M +SG+ P
Sbjct: 374 GIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEE-----GLRMFLEM--QLSGINPEK 426
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T+ VL + L L +G+C H Y + D I AL+DMY+KCG +D A +F
Sbjct: 427 ATLASVLPACAHLAGLHYGSCSHCYAIICGFTA--DTMICNALIDMYAKCGKIDTARKVF 484
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
RM ++ +++W M IHG G EA+ L D+M+ G+KP+ VTF L +AC H+GLV
Sbjct: 485 DRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVA 544
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
EG + F+ M +G+ P ++HY+C+VDLL RAG +E ++FI +P++PD +W +LLSA
Sbjct: 545 EGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSA 604
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C V+ +V LGE V K + +L PE T +FV LSN+Y++ RW D VR K
Sbjct: 605 CRVYKNVELGEGVSKKIQKLGPEST--------GNFVLLSNMYSAVGRWDDAAQVRFTQK 656
Query: 458 VKRVETEPGSSILQTT 473
+ E PG S ++ +
Sbjct: 657 EQGFEKSPGCSWIEIS 672
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 46/345 (13%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSSATWN 179
+++L G++IH +RGF+ +V+V T ++ Y + I +++FD M + ++ TW+
Sbjct: 232 QVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWS 291
Query: 180 AMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
AM+ Y C ++A + F L++ +D ++ +S V T+ V+ V + L L G
Sbjct: 292 AMVGAYVVCDFMREALE-LFCQLLMLKDDVIVLSAV-----TLATVIRVCANLTDLSTGT 345
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
C+H Y K+ ++ D+ +G L+ MY+KCG ++ A+ F+ M ++ +++TA+ +G
Sbjct: 346 CLHCYAIKSGFVL--DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQ 403
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
+G E +R+ M+ G+ P T S+ AC H GLH +G H
Sbjct: 404 NGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLA----GLH--------YGSCSHCY 451
Query: 358 HYSC-----------IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
C ++D+ + G ++ A + K + W +++ A +HG +
Sbjct: 452 AIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMH-KRGIVSWNTMIIAYGIHG---I 507
Query: 407 GEKVGKILLQLQPE------VTFVDV--ACTSEDFVALSNIYASA 443
G + + +Q E VTF+ + AC+ VA + +A
Sbjct: 508 GLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNA 552
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 134/284 (47%), Gaps = 21/284 (7%)
Query: 124 TLWLGRQIHVHVTK---RGFMFNV----LVATTLIHFYASNKDISSGKKVFDQMPMR--S 174
+L+ G+ IH H+ K R N+ + L+ Y + ++ + VFD+MP R +
Sbjct: 24 SLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKN 83
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
WN +I Y + A+ L+ ML G+ P T VL S L
Sbjct: 84 VVLWNLLIRAYAWNGPYEE-----AIDLYYKMLG--YGITPNRFTFPFVLKACSALKEAS 136
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +H +++ E++V++ TALVD Y+KCGCLD+A +F +M +++V+ W +M +G
Sbjct: 137 EGREIHCDIKRL--RLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194
Query: 295 MAIH-GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
++H G +E RLL M++ V PN+ T + A + G + + G
Sbjct: 195 FSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKEI-HGFCVRRGFV 252
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + I+D+ G+ ++ A + I + + W +++ A
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 213/362 (58%), Gaps = 19/362 (5%)
Query: 113 LGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
L S CS S L LG+ IH ++ + ++ V ++LI Y +I S + VF MP
Sbjct: 311 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
+ +WN MI+GY ALV+F DM +GVKP T VL SQL
Sbjct: 371 KTNVVSWNVMISGYVKVGS-----YLEALVIFTDM--RKAGVKPDAITFTSVLPACSQLA 423
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+LE G +H ++ ++ + N+V +G AL+DMY+KCG +D AL IF+++ E++ ++WT+M
Sbjct: 424 VLEKGKEIHNFIIES-KLEINEVVMG-ALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 481
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
HG+ EA++L + M+ KP+ VTF ++ +AC HAGLV+EG + F+ M +++G
Sbjct: 482 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 541
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLLSACNVHGDVALGEKV 410
+P ++HYSC++DLLGR G L EAY + P I+ D L +L SAC++H + LGE++
Sbjct: 542 FKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQI 601
Query: 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
G++L++ P+ ++ LSN+YAS ++W +V VR ++K ++ PG S +
Sbjct: 602 GRLLIEKDPD--------DPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWI 653
Query: 471 QT 472
+
Sbjct: 654 EV 655
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 128/454 (28%), Positives = 215/454 (47%), Gaps = 62/454 (13%)
Query: 15 LKAITTPSHIKQ---IHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
LK ++KQ IH ++++ L++ L LI LY + QS K+V +
Sbjct: 10 LKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLF-QSAKLVFQTIE--N 66
Query: 71 PPNLFLFNTLIR-CTPPQDSVLVFAYWVSKGLLTF-----DDFTYVFALGSCARFCSLST 124
P ++ L+N L+ CT ++ + + V LL F D FTY L +C+ L
Sbjct: 67 PLDITLWNGLMAACT--KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS---GLGR 121
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
+ G+ +H HV K GF +V+V ++ + YA K+FD+MP R A+WN +I+
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + K AL LF +M VSG KP T+ V+S ++L LE G +H +
Sbjct: 182 YYQDGQPEK-----ALELFEEM--KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELV 234
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
++ + D F+ +ALVDMY KCGCL+ A +F +++ KNV++W +M G ++ G
Sbjct: 235 RSGFAL--DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSC 292
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
I L M + G++P T +S+ AC + ++ G + + + VE I S ++D
Sbjct: 293 IELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYI-IRNRVEADIFVNSSLID 351
Query: 365 LLGRAGHLEEAYNFIMGIP----------------------------------IKPDAIL 390
L + G++ A N +P +KPDAI
Sbjct: 352 LYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAIT 411
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
+ S+L AC+ + G+++ +++ + E+ V
Sbjct: 412 FTSVLPACSQLAVLEKGKEIHNFIIESKLEINEV 445
>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 500
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/444 (32%), Positives = 235/444 (52%), Gaps = 23/444 (5%)
Query: 26 QIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCT 84
Q+H Q I L L L+ LYC A P + K VF P++ +N L+ +
Sbjct: 27 QLHVQAIVRGHLPQATLETDLVLLYCRCAALPCARK----VFDAMPSPSMHAYNILLAAS 82
Query: 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV 144
PP+ ++ + + ++ G D + AL +CA L LG +H + GF+ NV
Sbjct: 83 PPRAALELLSGLIAAGFRP-DRYAVPAALRACA---ELQDPLLGAVLHGFAVQFGFLGNV 138
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
+V++ L+ YA + + + +VFD+MP + S WN M+ Y A+ L +FR
Sbjct: 139 VVSSALLDMYAKSGLLDNAARVFDEMPEKDSVVWNCMVTAYARAGMAAE-----TLEIFR 193
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
V+V + ++ VL+ + G L G +HG M + ++DV IG AL+DMY
Sbjct: 194 RAQVEVVNMARDLRSVPSVLNACGKEGELMKGREIHGRMVRCLAF-DSDVPIGNALIDMY 252
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
+KCG +D + +F+ M E+NV++W+ + + +HGKG EA+R+ M VKPN +TF
Sbjct: 253 AKCGHVDASRAVFAGMLERNVVSWSTLISCYGVHGKGKEALRIYKEMLSQRVKPNGITFM 312
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
S+ ++C H+GLV +G +F++M GVEP +HY+ +VD+LGRAG +EEA I +P+
Sbjct: 313 SVLSSCSHSGLVTDGRMIFESMSKVHGVEPTAEHYASMVDILGRAGAIEEAVGLIRKMPM 372
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
P A W ++LSAC H +V +GE L +L+ + + ++V L IY +
Sbjct: 373 GPCASAWGAVLSACATHNNVDVGEIAAYRLFELEED--------NASNYVTLCGIYDAVG 424
Query: 445 RWPDVESVRKQMKVKRVETEPGSS 468
+ V +R +M+ + PG S
Sbjct: 425 QLDGVAGLRSRMRELGMVKTPGCS 448
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 234/463 (50%), Gaps = 38/463 (8%)
Query: 25 KQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K++HA + N ++ + + L+ +YC K ++ +F + L+N +I
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDR----KIGLWNAMIT 373
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ ++++L+F L + T + +C R + S IH V KR
Sbjct: 374 GYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK---KEAIHGFVVKR 430
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + V L+ Y+ I K++F +M R TWN +I GY + +
Sbjct: 431 GLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHE-----D 485
Query: 199 ALVLFRDMLV---------DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL++ M + +KP T++ +L + L L G +H Y K
Sbjct: 486 ALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA 545
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
DV +G+ALVDMY+KCGCL + +F ++ +NV+TW + +HG +AI +L
Sbjct: 546 --TDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLR 603
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M GVKPN VTF S+FAAC H+G+V EGL +F NMK +GVEP HY+C+VDLLGRA
Sbjct: 604 MMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRA 663
Query: 370 GHLEEAYNFIMGIPIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
G ++EAY I IP D A W SLL AC +H ++ +GE + L+QL+P V
Sbjct: 664 GRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNV------- 716
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V L+NIY+SA W VR+ MK + V EPG S ++
Sbjct: 717 -ASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIE 758
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 170/387 (43%), Gaps = 37/387 (9%)
Query: 25 KQIHAQL--ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQIHA + + S + L+ LY +K V+ VF N +N+LI
Sbjct: 113 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGA--VYKVFDRISERNQVSWNSLI- 167
Query: 83 CTPPQDSVLVFAYW-----VSKGLLTFD----DFTYVFALGSCARFCSLSTLWLGRQIHV 133
S+ F W + +L D FT V +C+ F L +G+Q+H
Sbjct: 168 -----SSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHA 222
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ ++G + N + TL+ Y ++S K + R TWN +++ C +
Sbjct: 223 YGLRKGEL-NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQ--- 278
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL R+M+++ GV+P T+ VL S L +L G +H Y K + EN
Sbjct: 279 --FLEALEYLREMVLE--GVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F+G+ALVDMY C + + +F M ++ + W AM TG A + EA+ L M +
Sbjct: 335 -FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEE 393
Query: 314 -CGVKPNAVTFTSLFAACCHAGLV--EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
G+ N+ T + AC +G +E +H F K G++ + ++D+ R G
Sbjct: 394 SAGLLANSTTMAGVVPACVRSGAFSKKEAIHGF---VVKRGLDRDRFVQNALMDMYSRLG 450
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSA 397
++ A I G D + W ++++
Sbjct: 451 KIDIAKR-IFGKMEDRDLVTWNTIITG 476
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 131/271 (48%), Gaps = 18/271 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + +R +++VL + + G+ D+F + L + A L + LG+QIH HV
Sbjct: 64 LLRSKVRSNLLREAVLTYIDMIVLGIKP-DNFAFPALLKAVA---DLQDMDLGKQIHAHV 119
Query: 136 TKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K G+ + V VA TL++ Y D + KVFD++ R+ +WN++I+ CS K
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM- 178
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE---FGACVHGYMEKTFYMPE 251
AL FR ML + V+P+ T+V V S + E G VH Y E
Sbjct: 179 ----ALEAFRCMLDE--DVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAY---GLRKGE 229
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ FI LV MY K G L ++ ++ ++++TW + + + + + EA+ L M
Sbjct: 230 LNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREM 289
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
GV+P+ T +S+ AC H ++ G L
Sbjct: 290 VLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 7/212 (3%)
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+SK + A++ + DM+V G+KP + +L + L ++ G +H ++ K
Sbjct: 66 RSKVRSNLLREAVLTYIDMIV--LGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFG 123
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y ++ V + LV++Y KCG +F R+ E+N ++W ++ + + K A+
Sbjct: 124 YGVDS-VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA 182
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY--SCIVDL 365
M D V+P++ T S+ AC + + EGL + + + + + + + +V +
Sbjct: 183 FRCMLDEDVEPSSFTLVSVALACSNFPM-PEGLLMGKQVHAYGLRKGELNSFIINTLVAM 241
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G+ G L + ++G D + W ++LS+
Sbjct: 242 YGKMGKLASS-KVLLGSFEGRDLVTWNTVLSS 272
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 205/341 (60%), Gaps = 21/341 (6%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ +I +A N + K+F MP + +WNAMI GY SQ+ +A+ NAL L
Sbjct: 321 NVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY-SQNGQAE----NALKL 375
Query: 203 FRDM-LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
F M +VD+ KP T VL + L +LE G H + ++ + ++DV +G LV
Sbjct: 376 FGQMQMVDM---KPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGF--QSDVLVGNTLV 430
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
MY+KCG +++A +F RMR+++ + +AM G AI+G E++ L + M+ G+KP+ V
Sbjct: 431 GMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRV 490
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + +ACCHAGLV+EG FD M + + P ++HY C++DLLGRAG +EA + I
Sbjct: 491 TFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINK 550
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PIKPDA +W SLLSAC H ++ LGEKV + L+ L P+ +V LSNIYA
Sbjct: 551 MPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQ--------NPAPYVLLSNIYA 602
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSS--ILQTTTHYTLDG 480
+A RW D+ SVR +MK ++V+ + G S +++ H L G
Sbjct: 603 AAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 152/319 (47%), Gaps = 32/319 (10%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKV 166
TY L C SL L +H H+ + F ++ + L+ Y + ++V
Sbjct: 66 TYDSLLQGCLNAKSLPDAKL---LHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRV 122
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+MP+++ +W AMI Y + AL F +M DV G++P T +L
Sbjct: 123 FDEMPVKNVVSWTAMIAAYARHEHGQE-----ALGFFYEMQ-DV-GIQPNHFTFASILPA 175
Query: 227 SSQLGLL-EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ L +L EF H + K + E++VF+G LVDMY+K GC++ A +F +M +++V
Sbjct: 176 CTDLEVLGEF----HDEIVKGGF--ESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDV 229
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++W AM G +G +A++L + K + +T+ ++ A G VE + LF+
Sbjct: 230 VSWNAMIAGYVQNGLIEDALKLFQEIP----KRDVITWNTMMAGYAQCGDVENAVELFEK 285
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M E ++ ++ ++ + G ++EA+ +P + + I W +++S +G V
Sbjct: 286 MP-----EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPER-NVISWNAVISGFAQNGQVE 339
Query: 406 LGEKVGKILLQLQPEVTFV 424
K L + PE V
Sbjct: 340 EALK----LFKTMPECNVV 354
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 112/519 (21%), Positives = 207/519 (39%), Gaps = 73/519 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L A + P K +HA +I + L +L+ +Y + ++ + VF
Sbjct: 75 LNAKSLPD-AKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARR----VFDEMPVK 129
Query: 73 NLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
N+ + +I + L F Y + + + FT+ L +C L
Sbjct: 130 NVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLG------ 183
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+ H + K GF NV V L+ YA I +++FD+MP R +WNAMI GY
Sbjct: 184 EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNG 243
Query: 190 ------KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
K ++ ++ + M+ + + + + Q L+ + + GY+
Sbjct: 244 LIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ-NLVSWNTMIAGYV 302
Query: 244 E--------KTFY-MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
+ K F MPE +V A++ +++ G ++ AL +F M E NV++W AM G
Sbjct: 303 QNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAG 362
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ +G+ A++L M+ +KPN TF + AC ++E+G + + + G +
Sbjct: 363 YSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHE-VVIRSGFQS 421
Query: 355 HIKHYSCIVDLLGRAGHLEEAYN---------------FIMGIPI--------------- 384
+ + +V + + G +E+A I+G I
Sbjct: 422 DVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQ 481
Query: 385 ----KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
KPD + + +LSAC G V G + I+ + F + E + + ++
Sbjct: 482 FTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTR------FYHITPAMEHYGCMIDLL 535
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLD 479
A + + + +M +K GS + TH +D
Sbjct: 536 GRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNID 574
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 13/219 (5%)
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
+ ++ C Q + + AL + +DM+ + G+ P +T +L L
Sbjct: 33 DGLVKSLCKQGRLRE-----ALHILQDMVEN--GIWPHSSTYDSLLQGCLNAKSLPDAKL 85
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H +M +T + + D+ +G LV +Y K G L A +F M KNV++WTAM A H
Sbjct: 86 LHAHMIQTQFECQ-DISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARH 144
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EA+ M+D G++PN TF S+ AC ++ E F + K G E ++
Sbjct: 145 EHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE----FHDEIVKGGFESNVFV 200
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ +VD+ + G +E A +P + D + W ++++
Sbjct: 201 GNGLVDMYAKRGCIEFARELFDKMP-QRDVVSWNAMIAG 238
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 241/461 (52%), Gaps = 39/461 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ H Q +S + LI +Y T + K VF N+ + ++IR
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK----VFDEIPKRNIVSWTSMIRG 151
Query: 84 TPPQDSVLVFAYWVSKGLLT----------FDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+ L A + K LL D V + +C+R + L IH
Sbjct: 152 YDLNGNALD-AVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR---VPAKGLTESIHS 207
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKD--ISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
V KRGF V V TL+ YA + ++ +K+FDQ+ + ++N++++ Y +QS
Sbjct: 208 FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY-AQSGM 266
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP- 250
+ + A +FR LV V T+ VL S G L G C+H ++ M
Sbjct: 267 SNE----AFEVFR-RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH---DQVIRMGL 318
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E+DV +GT+++DMY KCG ++ A F RM+ KNV +WTAM G +HG +A+ L +
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M D GV+PN +TF S+ AAC HAGL EG F+ MK ++GVEP ++HY C+VDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY+ I + +KPD+I+W SLL+AC +H +V L E L +L +
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELD--------SSNC 490
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ LS+IYA A RW DVE VR MK + + PG S+L+
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLE 531
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A FCS+S L +H + N+ TTL + Y D+ S
Sbjct: 8 ALFCSVSRL-------LHTERHTERQNL---TTLFNRYVDKTDVFS-------------- 43
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WN++I A+ AL+ F M + PT ++ C + S L + G
Sbjct: 44 -WNSVIADLARSGDSAE-----ALLAFSSM--RKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
H + + ++D+F+ +AL+ MYS CG L++A +F + ++N+++WT+M G
Sbjct: 96 KQTH--QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153
Query: 297 IHGKGNEAIRLLDSM------RDCGVKPNAVTFTSLFAACCH--AGLVEEGLHLF 343
++G +A+ L + D + +++ S+ +AC A + E +H F
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 160/502 (31%), Positives = 250/502 (49%), Gaps = 61/502 (12%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
RC LL+ +H+KQ HAQ+ T L + + +C+ T VF
Sbjct: 7 RCLVLLE--KCKNVNHLKQAHAQVFTTGLDTNTFALSRLLAFCSHPYQGSLTYACR-VFE 63
Query: 68 HFDPPNLFLFNTLIRCTPPQDSVL----VFAYWVSKGLLTFDDFTYVFALGSCA--RFCS 121
P L + NT+I+ + VF + GL D++T + L +CA R CS
Sbjct: 64 RIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGP-DNYTIPYVLKACAALRDCS 122
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L G+ +H + +K G +F++ V +L+ Y+ D+ + + VFD+MP S+ +W+ M
Sbjct: 123 L-----GKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWSVM 177
Query: 182 INGYCS-----------QSKKAKD---------------CAFNALVLFRDMLVDVSGVKP 215
I+GY KD C L LFR L+ ++ V P
Sbjct: 178 ISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFR--LLQLTHVVP 235
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
++ V +LS + LG L+ G +H Y+ KT + + + T+L+DMY+KCG L+ A
Sbjct: 236 DESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLS---IRLSTSLLDMYAKCGNLELAK 292
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M E++++ W AM +G+A+HG G A+++ M G+KP+ +TF ++F AC ++G
Sbjct: 293 RLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVFTACSYSG 352
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI-----KPDAI 389
+ EGL L D M S + +EP +HY C+VDLL RAG EA I I + +
Sbjct: 353 MAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETL 412
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
WR+ LSAC HG L E+ K LL+L+ S +V LSN+YA++ + D
Sbjct: 413 AWRAFLSACCNHGQAQLAERAAKRLLRLENH---------SGVYVLLSNLYAASGKHSDA 463
Query: 450 ESVRKQMKVKRVETEPGSSILQ 471
VR M+ K V+ PG S ++
Sbjct: 464 RRVRNMMRNKGVDKAPGCSSVE 485
>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 207/366 (56%), Gaps = 18/366 (4%)
Query: 111 FALGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
FALGS R C+ L L GRQ+H +V K GF FN++V ++L H Y + G+++
Sbjct: 185 FALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRA 244
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP ++ WN +I G +A++ + VL + ++ ++G +P T V V+S S+
Sbjct: 245 MPSQNVVAWNTLIAG------RAQN-GYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSE 297
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L L G +H + K V + ++L+ MYS+CGCL+ +L +F +V+ W+
Sbjct: 298 LATLGQGQQIHAEVIKA--GASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWS 355
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+M HG+G EAI L + M ++ N VTF SL AC H GL E+G+ FD M K
Sbjct: 356 SMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEK 415
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+GV+P ++HY+C+VDLLGR G +EEA I +P+K D I W++LLSAC +H + +
Sbjct: 416 YGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARR 475
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+ + + +L P +V LSNI+AS +RW DV VRK M+ ++++ EPG S
Sbjct: 476 ISEEVFRLDPRDPV--------PYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISW 527
Query: 470 LQTTTH 475
L+
Sbjct: 528 LEVKNQ 533
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 17/277 (6%)
Query: 130 QIHVHVTKRGFM--FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
Q+ +T G M N++ LI+ Y + D + +K+FD+MP R+ ATWNAM+ G
Sbjct: 102 QLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLI- 160
Query: 188 QSKKAKDCAFN--ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
FN L LF M + G P + + VL + L L G VHGY+ K
Sbjct: 161 ------QFEFNEEGLGLFSRM--NELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRK 212
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ E ++ + ++L MY KCG L + M +NV+ W + G A +G E +
Sbjct: 213 CGF--EFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVL 270
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ M+ G +P+ +TF S+ ++C + +G + + K G + S ++ +
Sbjct: 271 DQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEV-IKAGASLIVSVISSLISM 329
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
R G LE + + D + W S+++A HG
Sbjct: 330 YSRCGCLEYSLKVFLECE-NGDVVCWSSMIAAYGFHG 365
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 36/219 (16%)
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFS-------------------------------RM 280
+D FI L+++YSKCG LD A+ +F M
Sbjct: 85 SDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEM 144
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
E+NV TW AM G+ E + L M + G P+ S+ C + G
Sbjct: 145 PERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGR 204
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--AC 398
+ ++ K G E ++ S + + + G L E I +P + + + W +L++ A
Sbjct: 205 QVHGYVR-KCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQ-NVVAWNTLIAGRAQ 262
Query: 399 NVHGDVALGEKVGKILLQLQPE-VTFVDVACTSEDFVAL 436
N + + L + + +P+ +TFV V + + L
Sbjct: 263 NGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATL 301
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 242/470 (51%), Gaps = 47/470 (10%)
Query: 42 YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGL 101
Y+ + T ++S ++ VF P P +++ +F + ++
Sbjct: 417 YSSTAPVPATARSSTPPSRTALKVFDQSPAPWRAFLKAYSHGPFPLEALHLFKH--ARQH 474
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
L D F + F L +CA L G Q+H V ++GF F+ V T LI+ Y ++ +
Sbjct: 475 LADDTFVFTFVLKACA---GLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLV 531
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSK-------------------------KAKDCA 196
+KVFD+MP+++ +WN MI G+ + + C
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591
Query: 197 F-NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
+ AL L R M+ G+ P++ T++ V+ S LG + G ++GY EK M +D
Sbjct: 592 YAEALTLLRHMMA--GGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIM--SDAR 647
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+G +L+D+Y+K G + N+L +F M ++ N+++WT++ +G A+HG EA+ L MR
Sbjct: 648 VGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRA 707
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G+KPN +TF S+ AC H GLVE+GL F +M ++ ++P IKH+ CI+D+LGRAG L E
Sbjct: 708 GIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 767
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I G+P++ + +WR LL C+ +G+VA+GE+ K++ L+ E + DF
Sbjct: 768 AEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERE--------SGGDFA 819
Query: 435 ALSNIYASAERWPDVESVRK---QMKVKRVETEPGSSILQTTTHYTLDGF 481
LSN+ R+ D E RK Q K+ +++ ++ + H + G
Sbjct: 820 VLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGL 869
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 192/336 (57%), Gaps = 21/336 (6%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+C + L ++ + + N + +I YA ++ S KK+FDQ+P + +W
Sbjct: 1086 YCRIGQLQSAEKVFSQMKDK----NTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISW 1141
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
++MI Y SQ+ D +L LFR M + VKP + VLS + LG L+ G
Sbjct: 1142 SSMICAY-SQASHFSD----SLELFRQM--QRAKVKPDAVVIASVLSACAHLGALDLGKW 1194
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H Y+ + + D + +L+DM++KCGC+ AL +F+ M EK+ L+W ++ G+A +
Sbjct: 1195 IHDYVRRNNI--KADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANN 1252
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G +EA+ + SM G +PN VTF + AC + LVEEGL F+ MKS +EP +KH
Sbjct: 1253 GFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKH 1312
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C+VD+L RAG LE+A +FI +P+ PD ++WR LL AC HG+VA+ E K L +L
Sbjct: 1313 YGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELD 1372
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
P S D + LSNIYASA+RW D +VR+
Sbjct: 1373 P--------GNSADSMLLSNIYASADRWSDAMNVRR 1400
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/475 (27%), Positives = 224/475 (47%), Gaps = 61/475 (12%)
Query: 24 IKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+K++HA L+ + L + +++I+LY ++ S H VF + P FL+NTL+R
Sbjct: 857 VKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSA---HKVFKQIESPTTFLWNTLLR 913
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
P+D+++ + KG+ D+ T+ F L +CA+ C+ G Q+H HV K
Sbjct: 914 GLAQSDAPKDAIVFYKKAQEKGMKP-DNLTFPFVLKACAKTCAPKE---GEQMHNHVIKL 969
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF+ ++ V+ +LI+ YA+ ++ + VF++M ++ +WN++I GY SQ + K+
Sbjct: 970 GFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGY-SQHNRLKE---- 1024
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
L LF+ L+ V+ TMV V+S + LG C+ Y+E E DV++G
Sbjct: 1025 VLTLFK--LMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHI--EVDVYLGN 1080
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD--------- 309
L+D Y + G L +A +FS+M++KN +T AM T A G A ++ D
Sbjct: 1081 TLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLIS 1140
Query: 310 ----------------------SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
M+ VKP+AV S+ +AC H G ++ G + D ++
Sbjct: 1141 WSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVR 1200
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
++ + ++D+ + G ++EA + K D + W S++ +G
Sbjct: 1201 RN-NIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEK-DTLSWNSIILGLANNGFEDEA 1258
Query: 408 EKVGKILLQLQP---EVTFVDV--ACTSEDFVALSNIYASAERWPDVESVRKQMK 457
+ +L P EVTF+ V AC + V ER V ++ QMK
Sbjct: 1259 LDIFHSMLTEGPRPNEVTFLGVLIACANRQLV--EEGLDHFERMKSVHNLEPQMK 1311
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L +CA +L LG+ IH +V + + ++ +LI +A + +VF M
Sbjct: 1180 LSACAHLGALD---LGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEE 1236
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
+ + +WN++I G + + + AL +F ML + G +P + T + VL + L
Sbjct: 1237 KDTLSWNSIILGLANNGFEDE-----ALDIFHSMLTE--GPRPNEVTFLGVLIACANRQL 1289
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAM 291
+E G H K+ + E + +VD+ S+ G L+ A+ S M + + W +
Sbjct: 1290 VEEG-LDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRIL 1348
Query: 292 ATGMAIHGK---GNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
HG A + L + D G +++ ++++A+
Sbjct: 1349 LGACRTHGNVAVAEMATKKLSEL-DPGNSADSMLLSNIYAS 1388
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 231/437 (52%), Gaps = 45/437 (10%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VFT ++ +N++I + P ++ +F S+ + T V L +CA+
Sbjct: 188 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA-SHVTMVGVLSACAK-- 244
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L GRQ+ ++ + N+ +A ++ Y I K++FD M + + TW
Sbjct: 245 -IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 303
Query: 181 MINGYC-SQSKKAKDCAFN-------------------------ALVLFRDMLVDVSGVK 214
M++GY S+ +A N AL++F ++ + +K
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQ-KNMK 362
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
T+V LS +Q+G LE G +H Y++K + + + +AL+ MYSKCG L+ +
Sbjct: 363 LNQITLVSTLSACAQVGALELGRWIHSYIKK--HGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F+ + +++V W+AM G+A+HG GNEA+ + M++ VKPN VTFT++F AC H G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV+E LF M+S +G+ P KHY+CIVD+LGR+G+LE+A FI +PI P +W +L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC +H ++ L E LL+L+P V LSNIYA +W +V +RK
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPR--------NDGAHVLLSNIYAKLGKWENVSELRK 592
Query: 455 QMKVKRVETEPGSSILQ 471
M+V ++ EPG S ++
Sbjct: 593 HMRVTGLKKEPGCSSIE 609
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 131/465 (28%), Positives = 206/465 (44%), Gaps = 71/465 (15%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVF 66
RC +L +LK Q H +I S P A +L+ S S + VF
Sbjct: 39 RCVSLRQLK---------QTHGHMIRTGTFSDPYSAS--KLFAMAALSSFASLEYARKVF 87
Query: 67 THFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
PN F +NTLIR P S+ F VS+ + +T+ F + + A SL
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S LG+ +H K +V VA +LIH Y S D+ S KVF + + +WN+MI
Sbjct: 148 S---LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMI 204
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
NG+ + K AL LF+ M + VK + TMV VLS +++ LEFG V Y
Sbjct: 205 NGFVQKGSPDK-----ALELFKKM--ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI----- 297
+E+ ++ + A++DMY+KCG +++A +F M EK+ +TWT M G AI
Sbjct: 258 IEENRV--NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315
Query: 298 --------------------------HGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAAC 330
+GK NEA+ + ++ +K N +T S +AC
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
G +E G + +K K G+ + S ++ + + G LE++ + K D +
Sbjct: 376 AQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFV 433
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDVACT 429
W +++ +HG G + + ++Q VTF +V C
Sbjct: 434 WSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 201/354 (56%), Gaps = 17/354 (4%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L+ G +H H K G +V V TLI Y+ D+ S + +F+ M ++ +W MI+
Sbjct: 273 LFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISA 332
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + ++ A+ LF M + +G KP T++ ++S Q G LE G + Y
Sbjct: 333 YAEKGYMSE-----AMTLFNAM--EAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSI 385
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+++V + AL+DMY+KCG ++A +F M + V++WT M T A++G +A
Sbjct: 386 NNGL--KDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDA 443
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ L M + G+KPN +TF ++ AC H GLVE GL F+ M K+G+ P I HYSC+VD
Sbjct: 444 LELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVD 503
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LLGR GHL EA I +P +PD+ +W +LLSAC +HG + +G+ V + L +L+P+V
Sbjct: 504 LLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAV- 562
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V ++NIYASAE W V ++R+ MK +V PG SI+Q T+
Sbjct: 563 -------PYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTI 609
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 156/374 (41%), Gaps = 62/374 (16%)
Query: 77 FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
F L+ Q+++++F G+ T ++ T+ F L +CA+ LS L + IH HV
Sbjct: 25 FRHLVNQGHAQNALILFRQMKQSGI-TPNNSTFPFVLKACAK---LSHLRNSQIIHAHVL 80
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K F N+ V T + Y + VF +MP+R A+WNAM+ G+ A+
Sbjct: 81 KSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGF------AQSGF 134
Query: 197 FNAL-VLFRDMLVDVSGVKPTDTTMVCVL-SVSSQLGLLEFGACVHGYMEKTFYMPENDV 254
+ L L R M +SG++P T++ ++ S+ L GA + +M DV
Sbjct: 135 LDRLSCLLRHM--RLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHM---DV 189
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ L+ YSKCG L +A +F + ++V++W +M A K +A+ M
Sbjct: 190 SVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGML 249
Query: 313 DCGVKPNAVTFTSLFAACCH-----------------------------------AGLVE 337
D G P+ T +L ++C G V
Sbjct: 250 DGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVH 309
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSL 394
LF+ M K V ++ ++ G++ EA +N + KPD + +L
Sbjct: 310 SARFLFNGMSDKTCVS-----WTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLAL 364
Query: 395 LSACNVHGDVALGE 408
+S C G + LG+
Sbjct: 365 ISGCGQTGALELGK 378
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 9/146 (6%)
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
TWN+ +Q A NAL+LFR M SG+ P ++T VL ++L L
Sbjct: 20 TWNSNFRHLVNQGH-----AQNALILFRQM--KQSGITPNNSTFPFVLKACAKLSHLRNS 72
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H ++ K+ + ++++F+ TA VDMY KCG L++A +F M +++ +W AM G A
Sbjct: 73 QIIHAHVLKSCF--QSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFA 130
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVT 322
G + LL MR G++P+AVT
Sbjct: 131 QSGFLDRLSCLLRHMRLSGIRPDAVT 156
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
R + TW + + G A+ L M+ G+ PN TF + AC +
Sbjct: 14 RFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNS- 72
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+ K + +I + VD+ + G LE+A+N + +P++ D W ++L
Sbjct: 73 QIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVR-DIASWNAML 126
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 238/437 (54%), Gaps = 45/437 (10%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VFT ++ +N++I + P ++ +F S+ + T V L +CA+
Sbjct: 190 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA-SHVTMVGVLSACAK-- 246
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L GR++ ++ + N+ +A ++ Y I K++FD M + + TW
Sbjct: 247 -IRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 305
Query: 181 MINGYC-SQSKKA----------KD-CAFNALV--------------LFRDMLVDVSGVK 214
M++GY S+ +A KD A+NAL+ +F ++ + +K
Sbjct: 306 MLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQ-KNIK 364
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
T+V LS +Q+G LE G +H Y++K + + ++ +AL+ MYSKCG L+ A
Sbjct: 365 LNQITLVSTLSACAQVGALELGRWIHSYIKKNGI--KMNFYVTSALIHMYSKCGDLEKAR 422
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F+ + +++V W+AM G+A+HG G+EA+ + M++ VKPN VTFT++F AC H G
Sbjct: 423 EVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 482
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV+E LF M+S +G+ P KHY+CIVD+LGR+G+LE+A FI +PI P +W +L
Sbjct: 483 LVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 542
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC +H +++L E LL+L+P V LSNIYA + +W +V +RK
Sbjct: 543 LGACKIHANLSLAEMACTRLLELEPR--------NDGAHVLLSNIYAKSGKWDNVSELRK 594
Query: 455 QMKVKRVETEPGSSILQ 471
M+V ++ EPG S ++
Sbjct: 595 HMRVTGLKKEPGCSSIE 611
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 203/450 (45%), Gaps = 61/450 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQ HA +I + S P A + +S S + VF PN F +NTLIR
Sbjct: 46 QLKQTHAHMIRTGMFSDPYSASKL-FAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIR 104
Query: 83 C----TPPQDSVLVFAYWVSKGLLTF-DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
P S+ F VS + + +T+ F + + A SLS LG+ +H K
Sbjct: 105 AYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS---LGQSLHGMAIK 161
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
+V VA +LIH Y S D+ S KVF + + +WN+MING+ + K
Sbjct: 162 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDK---- 217
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LF+ M + VK + TMV VLS +++ LEFG V Y+E+ ++ +
Sbjct: 218 -ALELFKKM--ESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEEN--RVNVNLTLA 272
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI-------------------- 297
A++DMY+KCG +++A +F M EK+ +TWT M G AI
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332
Query: 298 -----------HGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+GK NEA+ + ++ +K N +T S +AC G +E G +
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSY 392
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
+K K G++ + S ++ + + G LE+A + K D +W +++ +HG
Sbjct: 393 IK-KNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHG--- 447
Query: 406 LGEKVGKILLQLQPE------VTFVDVACT 429
G + + ++Q VTF +V C
Sbjct: 448 CGSEAVDMFYKMQEANVKPNGVTFTNVFCA 477
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 22/369 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L SC S LGRQIH + K + +V V ++L+ YA + I +
Sbjct: 364 NEFTFATVLTSCT---SSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEAR 420
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF+ +P R + A+I+GY + AL LFR + + G+K T VL
Sbjct: 421 TVFECLPERDVVSCTAIISGYAQLGLDEE-----ALELFRRLQGE--GMKSNYVTYTGVL 473
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ S L L+ G VH ++ ++ +P + V + +L+DMYSKCG L + IF M E+
Sbjct: 474 TALSGLAALDLGKQVHNHVLRS-EIP-SFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERT 531
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
V++W AM G + HG+G E ++L MR+ VKP++VT ++ + C H GL ++GL++F
Sbjct: 532 VISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIF 591
Query: 344 DNMKS-KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++M S K VEP ++HY C+VDLLGR+G +EEA+ FI +P +P A +W SLL AC VH
Sbjct: 592 NDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHS 651
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+V +GE G+ LL+++P + ++V LSN+YASA RW DV S+R M K V
Sbjct: 652 NVDIGEFAGQQLLEIEP--------GNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVT 703
Query: 463 TEPGSSILQ 471
EPG S ++
Sbjct: 704 KEPGRSSIE 712
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 154/312 (49%), Gaps = 31/312 (9%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H H+ K ++ +V + T LI Y + VFD+MP R+ +W AMI+ Y
Sbjct: 262 GQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQ 321
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGV------------------KPTDTTMVCVL-SVSS 228
+ ++ A N + F D+ + ++GV +P + T VL S +S
Sbjct: 322 RGYASQ--ALN--LFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTS 377
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
LG + G +H + K Y E+ VF+G++L+DMY+K G + A +F + E++V++
Sbjct: 378 SLGFI-LGRQIHSLIIKLNY--EDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSC 434
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
TA+ +G A G EA+ L ++ G+K N VT+T + A ++ G + +++
Sbjct: 435 TAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVL- 493
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ + + + ++D+ + G+L + I + I W ++L + HG+ G
Sbjct: 494 RSEIPSFVVLQNSLIDMYSKCGNLTYSRR-IFDTMYERTVISWNAMLVGYSKHGE---GR 549
Query: 409 KVGKILLQLQPE 420
+V K+ ++ E
Sbjct: 550 EVLKLFTLMREE 561
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 223/409 (54%), Gaps = 26/409 (6%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
HF+ F+ P + + +R + ++ +FA + D +TY + A +L
Sbjct: 333 HFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIY-LDHYTYCSVFNAIA---AL 388
Query: 123 STLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L LG+++H K G N V ++ + + YA + +KVF++M R +W ++
Sbjct: 389 KCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSL 448
Query: 182 INGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+ Y CS+ KA + +F +M + G+ P T VL + L LLE+G V
Sbjct: 449 VTAYSQCSEWDKA-------IEIFSNMRAE--GIAPNQFTFSSVLVSCANLCLLEYGQQV 499
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG + K + D I +ALVDMY+KCGCL +A +F+R+ + ++WTA+ G A HG
Sbjct: 500 HGIICKVGL--DMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHG 557
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
++A++L M GV+PNAVTF + AC H GLVEEGL F MK +G+ P ++HY
Sbjct: 558 IVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHY 617
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
+CIVDLL R GHL +A FI +P++P+ ++W++LL AC VHG+V LGE + +L +
Sbjct: 618 ACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKA 677
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
E S +V LSN Y + + D S+R MK + V+ EPG S
Sbjct: 678 E--------NSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCS 718
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 144/350 (41%), Gaps = 42/350 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F N F + LI D F S+G+ D F Y L C
Sbjct: 127 LFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFP-DQFAYSGILQIC---I 182
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L ++ LG +H + RGF + V+T L++ YA ++I KVF+ M + +WNA
Sbjct: 183 GLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNA 242
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI G+ S D +A LF M+ + GV P T + V L + V
Sbjct: 243 MITGFTSN-----DLYLDAFDLFLRMMGE--GVTPDAQTFIGVAKAIGMLRDVNKAKEVS 295
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWTAMATGMAIH 298
GY + +++ +GTAL+DM SKCG L A IF+ + + W AM +G
Sbjct: 296 GYALE--LGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----------HAGLVEEGLHLFDNMK 347
G +A+ L M + + T+ S+F A HA ++ GL +
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEV----- 408
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++ + + + + G LE+ + + D I W SL++A
Sbjct: 409 ------NYVSISNAVANAYAKCGSLEDVRKVFNRMEDR-DLISWTSLVTA 451
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLVDV 210
H Y+ DI + ++FDQM R++ +W +I G A++ F + F +M
Sbjct: 113 HAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGL------AENGLFLDGFEFFCEM--QS 164
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
G+ P +L + L +E G VH + + F+ TAL++MY+K +
Sbjct: 165 QGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH--TFVSTALLNMYAKLQEI 222
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+++ +F+ M E NV++W AM TG + +A L M GV P+A TF + A
Sbjct: 223 EDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAI 282
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
V + + + GV+ + + ++D+ + G L+EA
Sbjct: 283 GMLRDVNKAKEV-SGYALELGVDSNTLVGTALIDMNSKCGSLQEA 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
L+ VHG++ K+ + + + + + YSKC +D A +F +M ++N +WT +
Sbjct: 83 FLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVL 142
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G+A +G + M+ G+ P+ ++ + C +E G + + + G
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIR-G 201
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
H + ++++ + +E++Y + + + + W ++++
Sbjct: 202 FTSHTFVSTALLNMYAKLQEIEDSYK-VFNTMTEVNVVSWNAMITG 246
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 159/465 (34%), Positives = 242/465 (52%), Gaps = 37/465 (7%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K++H Q+ +S L+ LY Q+ VF D N+ + ++I
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQA----RIVFEGLDDRNIVSWTSMISG 244
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR-FCSLSTLWLGRQIHVHVTKR 138
+ P +++ +F + + D+ AL S R + + L G+ IH V K
Sbjct: 245 YGQNGLPMEALRIFGQMRQRNVKP--DW---IALVSVLRAYTDVEDLEQGKSIHGCVVKM 299
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G F + +L YA + + FDQM + + WNAMI+GY AK+ N
Sbjct: 300 GLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGY------AKNGYTN 353
Query: 199 -ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A+ LF++M+ ++ T+ + +Q+G L+ + Y+ KT Y NDVF+
Sbjct: 354 EAVGLFQEMIS--KNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY--RNDVFVN 409
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
TAL+DM++KCG +D A +F R +K+V+ W+AM G +HG+G +AI L +M+ GV
Sbjct: 410 TALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVC 469
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN VTF L AC H+GLVEEG LF +MK +G+E +HY+C+VDLLGR+GHL EAY+
Sbjct: 470 PNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHLNEAYD 528
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
FI +PI+P +W +LL AC ++ V LGE + L L P + +V LS
Sbjct: 529 FITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDP--------FNTGHYVQLS 580
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDGFR 482
N+YAS+ W V VR M+ K + + G S+++ L FR
Sbjct: 581 NLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEING--KLQAFR 623
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 178/385 (46%), Gaps = 24/385 (6%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
H+ QIHAQL+ + L L+ + + VF F P++FL+N +IR
Sbjct: 86 HLNQIHAQLVVSGLVESGF---LVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIR 142
Query: 83 CTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
D++ +++ + G+ D FT L +C+ + L +G+++H + +
Sbjct: 143 GYSSHNFFGDAIEMYSRMQASGV-NPDGFTLPCVLKACS---GVPVLEVGKRVHGQIFRL 198
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF +V V L+ YA + + VF+ + R+ +W +MI+GY
Sbjct: 199 GFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNG-----LPME 253
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL +F M VKP +V VL + + LE G +HG + K E D+ I
Sbjct: 254 ALRIFGQM--RQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI-- 309
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L MY+KCG + A F +M NV+ W AM +G A +G NEA+ L M ++
Sbjct: 310 SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRT 369
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
+++T S AC G ++ + D + K+++ + + + ++D+ + G ++ A
Sbjct: 370 DSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVN--TALIDMFAKCGSVDLARE 427
Query: 378 FIMGIPIKPDAILWRSLLSACNVHG 402
+ + D ++W +++ +HG
Sbjct: 428 -VFDRTLDKDVVVWSAMIVGYGLHG 451
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 210/362 (58%), Gaps = 18/362 (4%)
Query: 113 LGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
LGS R C+ L+ L GR++H ++ K G + ++L+ TL+ YA I + FD M
Sbjct: 315 LGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN 374
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
+ S +++A+++G C Q+ A AL +FR ++ +SG+ P TTM+ VL S L
Sbjct: 375 PKDSVSFSAIVSG-CVQNGNAA----VALSIFR--MMQLSGIDPDLTTMLGVLPACSHLA 427
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
L+ G C HGY+ + D I AL+DMYSKCG + A +F+RM ++++W AM
Sbjct: 428 ALQHGFCSHGYLIVRGF--ATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G IHG G EA+ L + G+KP+ +TF L ++C H+GLV EG FD M +
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ P ++H C+VD+LGRAG ++EA++FI +P +PD +W +LLSAC +H ++ LGE+V
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVS 605
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
K + L PE T +FV LSNIY++A RW D +R K ++ PG S ++
Sbjct: 606 KKIQSLGPEST--------GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 657
Query: 472 TT 473
Sbjct: 658 IN 659
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 194/425 (45%), Gaps = 32/425 (7%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
H A ++ K++T I Q + +NA S + +L +LY S + +F
Sbjct: 13 HLLEACIQSKSLTEAKKIHQHFLKNTSNADSS--VLHKLTRLY----LSCNQVVLARRLF 66
Query: 67 THFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
P++ L+N +IR P D + + + + + +TY F L +C+ ++
Sbjct: 67 DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G +IH H G +V V T L+ FYA + +++F M R WNAMI
Sbjct: 127 D---GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIA 183
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
G CS D A+ L M + G+ P +T+V VL + L G +HGY
Sbjct: 184 G-CSLYGLCDD----AVQLI--MQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYC 236
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ + +N V +GT L+DMY+KC CL A IF M +N ++W+AM G E
Sbjct: 237 VRRSF--DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKE 294
Query: 304 AIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHY 359
A+ L D M +D + P VT S+ AC + G LH + K G I
Sbjct: 295 ALELFDQMILKD-AMDPTPVTLGSVLRACAKLTDLSRGRKLHCY---IIKLGXVLDILLG 350
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI--LLQL 417
+ ++ + + G +++A F + K D++ + +++S C +G+ A+ + ++ L +
Sbjct: 351 NTLLSMYAKCGVIDDAIRFFDXMNPK-DSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409
Query: 418 QPEVT 422
P++T
Sbjct: 410 DPDLT 414
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 14/233 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
Y+ L +C + SL+ ++IH H K + V L Y S + +++F
Sbjct: 10 NYLHLLEACIQSKSLTE---AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
D++P S WN +I Y A + F+ A+ L+ ML GV+P T VL
Sbjct: 67 DEIPNPSVILWNQIIRAY------AWNGPFDGAIDLYHSMLH--LGVRPNKYTYPFVLKA 118
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S L +E G +H + K F + E+DVF+ TALVD Y+KCG L A +FS M ++V+
Sbjct: 119 CSGLLAIEDGVEIHSH-AKMFGL-ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
W AM G +++G ++A++L+ M++ G+ PN+ T + A + G
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG 229
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 169/560 (30%), Positives = 259/560 (46%), Gaps = 124/560 (22%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
HRC +L + +KQIHAQ++ L Q +L Q T V+ VF
Sbjct: 25 HRCSSL---------NQVKQIHAQVLKANLHRESFVGQ--KLIAAFSLCRQMTLAVN-VF 72
Query: 67 THFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
P++ L+NTLIR + P + VF G+ D+FTY F L +C+
Sbjct: 73 NQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCA-DNFTYPFLLKACS----- 126
Query: 123 STLWLG--RQIHVHVTKRGFMFNVLVATTLIHFY---------ASNK------------- 158
+W+ IH V K GF ++ V +LI Y A+ K
Sbjct: 127 GKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSW 186
Query: 159 -----------DISSGKKVFDQMPMRSSATWNAMINGYCSQSK----------------- 190
++ +++FD+MP R + +WN +++GY +
Sbjct: 187 NSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVV 246
Query: 191 ----------KAKDCAFNALVLFRDMLV-----------------------------DVS 211
KA D A +LF M V + +
Sbjct: 247 SWSTMVLGYSKAGDMDM-ARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEA 305
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
G+K D T++ +LS + GLL G VH +E+T + V AL+DMY+KCG L+
Sbjct: 306 GLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPV--SNALIDMYAKCGSLE 363
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
NAL IF M K+V++W A+ G+A+HG G +A++L M+ G P+ VTF + AC
Sbjct: 364 NALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACT 423
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
HAG V+EGLH F M+ +GV P ++HY C+VDLLGR G L+EA+ + +P++P+AI+W
Sbjct: 424 HAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIW 483
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
+LL AC +H L E+V L++ + S + LSNIYA+A W + +
Sbjct: 484 GTLLGACRMHSATGLAEEVFDRLVKSE--------LSDSGNLSMLSNIYAAAGDWDNFAN 535
Query: 452 VRKQMKVKRVETEPGSSILQ 471
+R +MK ++ G S ++
Sbjct: 536 IRLRMKSTSIQKPSGGSSIE 555
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 152/455 (33%), Positives = 233/455 (51%), Gaps = 37/455 (8%)
Query: 26 QIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPN-------LFLF 77
Q HA ++ L S P LI Y S+ + F FD +
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGY-------SSSGLFDFASRLFDGAEDKDVVTWTAMI 176
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH-VHVT 136
+ +R ++++ F G+ ++ T V L + + + + GR +H +++
Sbjct: 177 DGFVRNGSASEAMVYFVEMKKTGVAA-NEMTVVSVLKAAGK---VEDVRFGRSVHGLYLE 232
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
+V + ++L+ Y +KVFD+MP R+ TW A+I GY QS+ C
Sbjct: 233 TGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV-QSR----CF 287
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
+++F +ML S V P + T+ VLS + +G L G VH YM K E +
Sbjct: 288 DKGMLVFEEMLK--SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN--SIEINTTA 343
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
GT L+D+Y KCGCL+ A+L+F R+ EKNV TWTAM G A HG +A L +M V
Sbjct: 344 GTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
PN VTF ++ +AC H GLVEEG LF +MK ++ +E HY+C+VDL GR G LEEA
Sbjct: 404 SPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAK 463
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I +P++P ++W +L +C +H D LG+ +++LQP S + L
Sbjct: 464 ALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS--------HSGRYTLL 515
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+N+Y+ ++ W +V VRKQMK ++V PG S ++
Sbjct: 516 ANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIE 550
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 223/409 (54%), Gaps = 26/409 (6%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
HF+ F+ P + + +R + ++ +FA + D +TY + A +L
Sbjct: 333 HFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIY-LDHYTYCSVFNAIA---AL 388
Query: 123 STLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L LG+++H K G N V ++ + + YA + +KVF++M R +W ++
Sbjct: 389 KCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSL 448
Query: 182 INGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+ Y CS+ KA + +F +M + G+ P T VL + L LLE+G V
Sbjct: 449 VTAYSQCSEWDKA-------IEIFSNMRAE--GIAPNQFTFSSVLVSCANLCLLEYGQQV 499
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG + K + D I +ALVDMY+KCGCL +A +F+R+ + ++WTA+ G A HG
Sbjct: 500 HGIICKVGL--DMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHG 557
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
++A++L M GV+PNAVTF + AC H GLVEEGL F MK +G+ P ++HY
Sbjct: 558 IVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHY 617
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
+CIVDLL R GHL +A FI +P++P+ ++W++LL AC VHG+V LGE + +L +
Sbjct: 618 ACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKA 677
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
E S +V LSN Y + + D S+R MK + V+ EPG S
Sbjct: 678 E--------NSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCS 718
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 144/350 (41%), Gaps = 42/350 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F N F + LI D F S+G+ D F Y L C
Sbjct: 127 LFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFP-DQFAYSGILQIC---I 182
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L ++ LG +H + RGF + V+T L++ YA ++I KVF+ M + +WNA
Sbjct: 183 GLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNA 242
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI G+ S D +A LF M+ + GV P T + V L + V
Sbjct: 243 MITGFTSN-----DLYLDAFDLFLRMMGE--GVTPDAQTFIGVAKAIGMLRDVNKAKEVS 295
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWTAMATGMAIH 298
GY + +++ +GTAL+DM SKCG L A IF+ + + W AM +G
Sbjct: 296 GYALE--LGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRS 353
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----------HAGLVEEGLHLFDNMK 347
G +A+ L M + + T+ S+F A HA ++ GL +
Sbjct: 354 GFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEV----- 408
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++ + + + + G LE+ + + D I W SL++A
Sbjct: 409 ------NYVSISNAVANAYAKCGSLEDVRKVFNRMEDR-DLISWTSLVTA 451
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLVDV 210
H Y+ DI + ++FDQM R++ +W +I G A++ F + F +M
Sbjct: 113 HAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGL------AENGLFLDGFEFFCEM--QS 164
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
G+ P +L + L +E G VH + + F+ TAL++MY+K +
Sbjct: 165 QGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH--TFVSTALLNMYAKLQEI 222
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+++ +F+ M E NV++W AM TG + +A L M GV P+A TF + A
Sbjct: 223 EDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAI 282
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
V + + + GV+ + + ++D+ + G L+EA
Sbjct: 283 GMLRDVNKAKEV-SGYALELGVDSNTLVGTALIDMNSKCGSLQEA 326
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
L+ VHG++ K+ + + + + + YSKC +D A +F +M ++N +WT +
Sbjct: 83 FLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVL 142
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G+A +G + M+ G+ P+ ++ + C +E G + + + G
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIR-G 201
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
H + ++++ + +E++Y + + + + W ++++
Sbjct: 202 FTSHTFVSTALLNMYAKLQEIEDSYK-VFNTMTEVNVVSWNAMITG 246
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 162/504 (32%), Positives = 257/504 (50%), Gaps = 68/504 (13%)
Query: 22 SHIKQIHAQLITNALKS-----PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
S ++Q H+Q+I L S PPL +C + ++ + +F P+ FL
Sbjct: 36 SQLRQYHSQIIRLGLSSHNHLIPPLIN-----FCARASTSDALTYALKLFDSIPQPDAFL 90
Query: 77 FNTLIR------CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+NT+I+ P +L++++ + +L ++FT+ L +C + + G Q
Sbjct: 91 YNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLP-NNFTFPSLLIACRK------IQHGMQ 143
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC---- 186
IH H+ K GF + + +LIH Y + + + ++VF +P S +W ++I+GY
Sbjct: 144 IHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGL 203
Query: 187 ---------------SQSKKAKDCAF-------NALVLFRDMLVDVSGV--KPTDTTMVC 222
S S A A+ A LF M + + V K TTM
Sbjct: 204 IDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTM-- 261
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
LS + LG L+ G +H Y+++ E D + TA+VDMY KCGCL+ AL +F +
Sbjct: 262 -LSACTGLGALDQGKWIHEYIKRNGI--ELDSKLTTAIVDMYCKCGCLEKALQVFHSLPL 318
Query: 283 --KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+ + +W M G+A+HG G AI+L M V P+ +TF +L AC H+GLVEEG
Sbjct: 319 PCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGR 378
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ F M +G+EP ++H+ C+VDLLGRAG + EA I +P+ PD + +LL AC
Sbjct: 379 NYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKK 438
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
H ++ LGE++G+ +++L+P S +V L+N+YA+A +W D VRK M +
Sbjct: 439 HRNIELGEEIGRRVIELEPN--------NSGRYVLLANLYANAGKWEDAAKVRKLMDDRG 490
Query: 461 VETEPGSSI--LQTTTHYTLDGFR 482
V+ PG S+ LQ T H + G R
Sbjct: 491 VKKAPGFSMIELQGTVHEFIAGER 514
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 211/370 (57%), Gaps = 29/370 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV L S R LS LG+ IH + KR + ++ LI Y + +S +VF
Sbjct: 206 TYVCVLVSSGRVGCLS---LGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVF 262
Query: 168 DQMPMRSSATWNAMING--YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
++ + +WN+MI+G +C +SK+A D LF ++ SG+KP + VLS
Sbjct: 263 GELEKKDKVSWNSMISGLVHCERSKEAID-------LF-SLMQTSSGIKPDGHILTSVLS 314
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LG ++ G VH Y+ + D IGTA+VDMY+KCG ++ AL IF+ +R KNV
Sbjct: 315 ACASLGAVDHGRWVHEYILTAGI--KWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
TW A+ G+AIHG G E++R + M G KPN VTF + ACCH GLV+EG F
Sbjct: 373 FTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHK 432
Query: 346 MKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MKS+ + + P ++HY C++DLL RAG L+EA + +P+KPD + ++LSAC G
Sbjct: 433 MKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRG-- 490
Query: 405 ALGEKVGKILLQLQPEV--TFVDVACT-SEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
L++L E+ +F+D+ S +V LSNI+A+ RW DV +R+ MKVK +
Sbjct: 491 --------TLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGI 542
Query: 462 ETEPGSSILQ 471
PGSS ++
Sbjct: 543 SKVPGSSYIE 552
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 192/388 (49%), Gaps = 34/388 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKA--SPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQI QLIT L L + + K A + S+ I+H + + F +NTL+
Sbjct: 23 KQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVLSS---FSYNTLLS 79
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
C P+ ++ + +VS G + D FT+ +C +F + G+QIH VTK
Sbjct: 80 SYAVCDKPRVTIFAYKTFVSNGF-SPDMFTFPPVFKACGKFSGIRE---GKQIHGIVTKM 135
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF ++ V +L+HFY + + KVF +MP+R +W +I G+ +++ K+
Sbjct: 136 GFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGF-TRTGLYKE---- 190
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL F M V+P T VCVL S ++G L G +HG + K + + G
Sbjct: 191 ALDTFSKM-----DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET--GN 243
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVK 317
AL+DMY KC L +A+ +F + +K+ ++W +M +G+ + EAI L M+ G+K
Sbjct: 244 ALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIK 303
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEE 374
P+ TS+ +AC G V+ G + + + + KW + HI + IVD+ + G++E
Sbjct: 304 PDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKW--DTHIG--TAIVDMYAKCGYIET 359
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHG 402
A GI K + W +LL +HG
Sbjct: 360 ALEIFNGIRSK-NVFTWNALLGGLAIHG 386
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 246/471 (52%), Gaps = 36/471 (7%)
Query: 10 FALLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
FAL A++ P Q H Q+ + P + LI +YC + K+ +
Sbjct: 54 FALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFE---EN 110
Query: 69 FDPPNLFL-FNTLI-------RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
F L + +N L+ +C+ ++VL+F +G+ + T + + +C
Sbjct: 111 FHSRKLTVCYNALVSGYVSNSKCS---EAVLLFRQMNEEGV-PVNSVTLLGLIPACV--- 163
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L LG +H K GF +V V I Y ++ +K+FD+MP++ +WNA
Sbjct: 164 SPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNA 223
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
M++GY A N L L+R+M D++GV P T+V VLS + LG G V
Sbjct: 224 MVSGYAQNG-----LATNVLELYRNM--DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVE 276
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
++ + + ++ F+ AL++MY++CG L A +F M E+ +++WTA+ G +HG
Sbjct: 277 FKIQASGFT--SNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGH 334
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G A++L M G++P+ F + +AC HAGL ++GL F MK + +EP +HYS
Sbjct: 335 GEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYS 394
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGRAG L+EA I +PIKPD +W +LL AC +H +V L E + +++L+PE
Sbjct: 395 CMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPE 454
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V LSNIY++A V +R MK K+++ +PG S ++
Sbjct: 455 NIGY--------YVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVE 497
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 172/365 (47%), Gaps = 26/365 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ FT+ FAL SCA +LS LG Q H +TK G +F V T LI Y + + +
Sbjct: 48 NAFTFPFALKSCA---ALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNAR 104
Query: 165 KVFDQ--MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
KVF++ + + +NA+++GY S SK ++ A++LFR M + GV T++
Sbjct: 105 KVFEENFHSRKLTVCYNALVSGYVSNSKCSE-----AVLLFRQM--NEEGVPVNSVTLLG 157
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
++ LE G+ +H K Y ++DV + + MY KCG ++ A +F M
Sbjct: 158 LIPACVSPINLELGSSLHCSTLK--YGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPV 215
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K +++W AM +G A +G + L +M GV P+ VT + ++C + G G +
Sbjct: 216 KGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEV 275
Query: 343 -FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F S + P + + ++++ R G+L +A G+P + + W +++ +H
Sbjct: 276 EFKIQASGFTSNPFLN--NALINMYARCGNLTKAQAVFDGMPER-TLVSWTAIIGGYGMH 332
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G G+I +QL E+ + FV + + + A K MK +
Sbjct: 333 GH-------GEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMK-RNY 384
Query: 462 ETEPG 466
+ EPG
Sbjct: 385 QLEPG 389
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/505 (31%), Positives = 253/505 (50%), Gaps = 51/505 (10%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTK-KASPQSTK 60
+S RC LL+ + H+KQ HAQ+ T L++ + +C+ K +S
Sbjct: 1 MSSSTKRCLVLLE--KCKSMKHLKQAHAQVFTTGLENNTFALSRVLAFCSSHKHHHESLT 58
Query: 61 IVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
VF P + ++NTLI+ + ++ VF + + L D++T + L +C
Sbjct: 59 YACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKML-QSELKPDNYTIPYVLKAC 117
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
F S G+ IH + +K G +F++ V +L+ Y D+ + + VFD++P +
Sbjct: 118 GTFHDCS---FGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVV 174
Query: 177 TWNAMINGYCS-----------QSKKAKD---------------CAFNALVLFRDMLVDV 210
+W+ MI+GY KD C +L LFR L+ +
Sbjct: 175 SWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFR--LMQL 232
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
+ + P ++ V +LS + LG LE G +H ++ + +P + V + T+L+DMY+KCG L
Sbjct: 233 TDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLS-VRLSTSLLDMYAKCGNL 291
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+ A +F M ++V+ W AM +GMA+HG G A++L M GVKP+ +TF ++F AC
Sbjct: 292 ELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTAC 351
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI----KP 386
++G+ EGL L D M S + + P +HY C+VDLL RAG EEA I I
Sbjct: 352 SYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSE 411
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
+ + WR+ LSAC HG+ L E + +LQL + S +V LSN+YA++ +
Sbjct: 412 ETLAWRAFLSACCNHGETQLAELAAEKVLQLDNHI-------HSGVYVLLSNLYAASGKH 464
Query: 447 PDVESVRKQMKVKRVETEPGSSILQ 471
D VR MK+K PG S ++
Sbjct: 465 SDARRVRDMMKIKGTNKAPGCSSVE 489
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 132/345 (38%), Positives = 199/345 (57%), Gaps = 17/345 (4%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LG IH V K G +V VA++L+ Y+ +F MP+++ WN++I+ YC
Sbjct: 461 LGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYC 520
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ D + N LF +L + + P + VL+ S + L G VHGY+ +
Sbjct: 521 RNN--LPDLSIN---LFSQVLRN--DLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVR- 572
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
++P D+ + L+DMY KCG L A IF R+ EKN++ W +M G HG+ ++AI
Sbjct: 573 LWIP-FDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIE 631
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L D MR G+KP+ VTF SL ++C H+GL+EEGLHLF+ MK K+G+EP ++HY IVDL
Sbjct: 632 LFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLY 691
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
GRAG L +AY+F+ +P++PD +W SLL +C +H ++ LGE V LL ++P
Sbjct: 692 GRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPS------ 745
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++V L N+Y AE W ++R MK K ++ PG S ++
Sbjct: 746 --KGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIE 788
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 181/380 (47%), Gaps = 29/380 (7%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHF-DPPNLFLFNTLIR 82
KQIH+ ++ N L P L LI Y K P + ++F D N+ +N +I
Sbjct: 159 KQIHSYIVRNMLNFDPFLETALIDTY-FKCGRPTEAR---YLFKKLKDRSNIVAWNVMIG 214
Query: 83 CTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
++ L + + ++ L +C + +S G+Q+H K G
Sbjct: 215 GFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVS---FGKQVHCDAIKVG 271
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F + V T+L+ Y + I S +KVF+++P + WNA+I+ Y A++A
Sbjct: 272 FEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGY-----AYDA 326
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-ENDVFIGT 258
L +++ M + V T++ VL+ SS GL + G +H + K P ++ + I +
Sbjct: 327 LRIYKQM--KLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKR---PLQSSITIQS 381
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+ MYSK G + A IFS M+E++V+ W ++ +G + K EA+ +M VKP
Sbjct: 382 ALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKP 441
Query: 319 NAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
++ S+ +AC V+ G +H F K G++ + S ++D+ + G E A
Sbjct: 442 DSDIMASIISACTGLEKVDLGCTIHGF---VIKSGLQLDVFVASSLLDMYSKFGFPERAG 498
Query: 377 NFIMGIPIKPDAILWRSLLS 396
N +P+K + + W S++S
Sbjct: 499 NIFSDMPLK-NLVAWNSIIS 517
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 142/335 (42%), Gaps = 24/335 (7%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL------------S 123
L N ++C D+V VF G+ D + + RF L S
Sbjct: 94 LINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSS 153
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS-ATWNAMI 182
G+QIH ++ + F+ + T LI Y + + +F ++ RS+ WN MI
Sbjct: 154 GYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMI 213
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G+ N+L + +L VK ++ C LS Q + FG VH
Sbjct: 214 GGFGENGLWE-----NSLEYY--LLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCD 266
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
K + E+D ++ T+L+ MY KC +++A +F+ + +K + W A+ + +G
Sbjct: 267 AIKVGF--EDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAY 324
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+A+R+ M+ C V ++ T ++ + AGL + G L K ++ I S +
Sbjct: 325 DALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG-RLIHTEIVKRPLQSSITIQSAL 383
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + + G A N I + D + W S++S
Sbjct: 384 LTMYSKFGDSNYA-NSIFSTMKERDVVAWGSVISG 417
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 42/298 (14%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
FTY L +CA SLS L G+ IH + G + + ++LI+ Y + KV
Sbjct: 54 FTYPSLLKACA---SLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKV 110
Query: 167 FDQMPMRSSAT-----WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
FDQ+P + WN++I+GY + + +V F M SG K
Sbjct: 111 FDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEE-----GMVQFGRM--QSSGYKE------ 157
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
G +H Y+ + M D F+ TAL+D Y KCG A +F +++
Sbjct: 158 --------------GKQIHSYIVRN--MLNFDPFLETALIDTYFKCGRPTEARYLFKKLK 201
Query: 282 EK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
++ N++ W M G +G ++ + VK + +FT +AC V G
Sbjct: 202 DRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGK 261
Query: 341 HLF-DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ D +K + +P++ ++ ++ + G+ +E A +P K + LW +L+SA
Sbjct: 262 QVHCDAIKVGFEDDPYV--HTSLLTMYGKCQMIESAEKVFNEVPDK-EIELWNALISA 316
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F+ NL +N++I C P S+ +F+ V + L D ++ L A
Sbjct: 500 IFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQ-VLRNDLYPDSVSFTSVL---AAIS 555
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S++ L G+ +H ++ + F++ V TLI Y + + +F+++ ++ WN+
Sbjct: 556 SVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNS 615
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY S + +K A+ LF +M SG+KP D T + +LS + GL+E G +
Sbjct: 616 MIGGYGSHGECSK-----AIELFDEM--RSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLF 668
Query: 241 GYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
M+ F + P + ++ +VD+Y + GCL +A M E + W ++ IH
Sbjct: 669 EMMKMKFGIEPRMEHYVN--IVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIH 726
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 201/366 (54%), Gaps = 20/366 (5%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
TYV L +CA +L W+ R +H H G +V V T L+ YA + I + V
Sbjct: 231 ITYVSILNACASEGALK--WVKR-VHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVV 287
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+M +R +WN MI + + A LF M + G KP + +L+
Sbjct: 288 FDRMKVRDVVSWNVMIGAFAEHGR-----GHEAYDLFLQMQTE--GCKPDAIMFLSILNA 340
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ G LE+ +H + + E DV +GTALV MYSK G +D+A ++F RM+ +NV+
Sbjct: 341 CASAGALEWVKKIHRHALDSGL--EVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVV 398
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W AM +G+A HG G +A+ + M GVKP+ VTF ++ +AC HAGLV+EG + M
Sbjct: 399 SWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAM 458
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+G+EP + H +C+VDLLGRAG L EA FI + + PD W +LL +C +G+V L
Sbjct: 459 TQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVEL 518
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
GE V K L+L P+ + +V LSNIYA A +W V VR M+ + + EPG
Sbjct: 519 GELVAKERLKLDPK--------NAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPG 570
Query: 467 SSILQT 472
S ++
Sbjct: 571 RSWIEV 576
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 190/412 (46%), Gaps = 63/412 (15%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
++++V + +GL+T D F YV L C + L +Q+H + K N V
Sbjct: 11 EAIVVLMNRLQRGLIT-DSFMYVEVLKRCLK---QKDLMAAKQVHDCIIKSRMEQNAHVM 66
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
L+H Y + + VFD + +S A+WNAMI GY + K A+D A+ LFR+M
Sbjct: 67 NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYV-EHKHAED----AMRLFREMC 121
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ GV+P T + +L + L L++G VH + E+DV +GTAL+ MY KC
Sbjct: 122 HE--GVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGL--ESDVRVGTALLRMYGKC 177
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A IF + ++++WT M A G G EA RL+ M G KPNA+T+ S+
Sbjct: 178 GSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL 237
Query: 328 AACCHAG-----------LVEEGLHL------------------------FDNMKSKWGV 352
AC G ++ GL L FD MK +
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR--- 294
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI---KPDAILWRSLLSACNVHGDVALGEK 409
+ ++ ++ G EAY+ + + KPDAI++ S+L+AC G + +K
Sbjct: 295 --DVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKK 352
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ + L E VDV + AL ++Y+ + D V +MKV+ V
Sbjct: 353 IHRHALDSGLE---VDVRVGT----ALVHMYSKSGSIDDARVVFDRMKVRNV 397
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 208/369 (56%), Gaps = 20/369 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T + L SC + L G IH H + G ++ + TLI Y+ DISS
Sbjct: 255 DASTIISLLSSCQQ---PEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSAT 311
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD M +R+ +W AMI+GY S+ + D ALVLF M + +G KP T++ ++
Sbjct: 312 ILFDGMSIRTCVSWTAMISGY-SEVGRVDD----ALVLFNAM--EETGEKPDIVTVLSLI 364
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + G L G + Y + + + DV + AL+DMY+KCG L++A IF + +
Sbjct: 365 SGCGKTGALGLGHWIDNY--ASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRT 422
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++WTAM A++G+ EA+ L + + G++PN +TF ++ ACCH G +E+G F
Sbjct: 423 VVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFM 482
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M ++G+ P + HYSC++DLLGR G L EA I +P+KPD +W +LL AC +H ++
Sbjct: 483 MMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNM 542
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GE V + L +LQP V FV ++NIYAS RW +V ++RK M+ ++
Sbjct: 543 EIGEYVSRYLFELQPRVAV--------SFVEMANIYASVGRWDEVAAMRKTMRSNQMRKS 594
Query: 465 PGSSILQTT 473
PG S++Q
Sbjct: 595 PGKSVVQVN 603
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 16/302 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ F +CA+ L+ + IH HV K F ++ V T ++ Y +
Sbjct: 51 NNFTFPFLSKACAKLSHLTN---SQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAY 107
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD+MP+R+ A+WNAMI G+ + D FN + R + G +P T++ +
Sbjct: 108 NLFDKMPVRNIASWNAMIIGF--SQIGSLDRVFNLFMGMR-----LVGTRPDAATVIGLT 160
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-- 282
L F VH +T + D + + YSKCG L A ++F +++
Sbjct: 161 RAVISAKSLRFLKAVHAIGIETGL--DADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTA 218
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++ ++W ++ A GK +A++ + G KP+A T SL ++C + G L
Sbjct: 219 RSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGF-L 277
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G + I + ++ + R G + A G+ I+ + W +++S + G
Sbjct: 278 IHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMSIRT-CVSWTAMISGYSEVG 336
Query: 403 DV 404
V
Sbjct: 337 RV 338
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 36/237 (15%)
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN+ I G +Q +K AL LF + ++G++P + T + ++L L
Sbjct: 20 WNSSIRGAVNQGNASK-----ALALFHQL--KLNGLQPNNFTFPFLSKACAKLSHLTNSQ 72
Query: 238 CVHGYMEKT-FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H ++ K+ FY +D+++ TA+VDMY KCG +D+A +F +M +N+ +W AM G +
Sbjct: 73 IIHTHVVKSPFY---SDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFS 129
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSL-----------FAACCHAGLVEEGLHLFDN 345
G + L MR G +P+A T L F HA +E GL +
Sbjct: 130 QIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTS 189
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVH 401
+ + W I YS + G L+ A GI ++ W SL+ AC H
Sbjct: 190 VSNTW-----IAAYS-------KCGELQLAKMVFHGIQKTARSSVSWNSLI-ACYAH 233
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 146/462 (31%), Positives = 243/462 (52%), Gaps = 60/462 (12%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPP----QDSVLVFAYWVSKG 100
+I L+ K ++ K+ F +L ++ LI C ++++++F + G
Sbjct: 229 MIVLFGKKGNVEEACKL----FNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANG 284
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
++ D+ + L +C+R + T G+ +H V K G V + LIH Y+S +++
Sbjct: 285 IMV-DEVVVLSVLSACSRLLVVIT---GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEV 340
Query: 161 SSGKKVF-------------------------------DQMPMRSSATWNAMINGYCSQS 189
+ +K+F D MP + + +W+AMI+GY Q
Sbjct: 341 VTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQD 400
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + LVLF++M + G KP +T +V V+S + L L+ G +H Y+ K
Sbjct: 401 RFTE-----TLVLFQEM--QIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGL- 452
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ ++ +GT L++MY K GC+++AL +F + EK V TW A+ G+A++G +++++
Sbjct: 453 -KINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFS 511
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M++ GV PN +TF ++ AC H GLV+EG F++M + + P+IKHY C+VDLLGRA
Sbjct: 512 EMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRA 571
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G L+EA I +P+ PD W +LL AC +GD GE++G+ L++L P+ +
Sbjct: 572 GMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFN---- 627
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYAS W DV VR M+ V PG S+++
Sbjct: 628 ----VLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIE 665
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 196/461 (42%), Gaps = 113/461 (24%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLL----TFDDFTYVFALGSCA-RF 119
+F+H + PN F+ NT+++ ++S A WV K +L D++TY SC+ R
Sbjct: 82 IFSHIENPNGFICNTMMKGYMQRNSPCK-AIWVYKFMLESNVAADNYTYPILFQSCSIRL 140
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
G+ I HV K GF +V + TLI+ YA ++S +KVFD + +WN
Sbjct: 141 AEFD----GKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWN 196
Query: 180 AMINGY--CSQSKKAKDC----------AFNALV-------------------------- 201
+M+ GY ++AKD A N+++
Sbjct: 197 SMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS 256
Query: 202 -------------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
LF++M + +G+ + ++ VLS S+L ++ G VHG
Sbjct: 257 WSALISCYEQNEMYEEALILFKEM--NANGIMVDEVVVLSVLSACSRLLVVITGKLVHGL 314
Query: 243 MEKTFYMPENDVFIGTALVDMYS-------------------------------KCGCLD 271
+ K E V + AL+ MYS KCG ++
Sbjct: 315 VVKVGI--ETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIE 372
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F M +K+ ++W+AM +G A + E + L M+ G KP+ S+ +AC
Sbjct: 373 KARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACT 432
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
H +++G + ++ K G++ +I + ++++ + G +E+A G+ K + W
Sbjct: 433 HLAALDQGKWIHAYIR-KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVST-W 490
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQP------EVTFVDV 426
+L+ ++G L +K K +++ E+TFV V
Sbjct: 491 NALILGLAMNG---LVDKSLKTFSEMKEHGVTPNEITFVAV 528
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 212/396 (53%), Gaps = 44/396 (11%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D++++ F L +CAR LS L GR+IH K G +V V LI ++S + + +
Sbjct: 9 DNYSFPFVLKACAR---LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAAR 65
Query: 165 KVFDQMP--MRSSATWNAMINGYCSQSK--------------------------KAKDCA 196
VFD +P +R +WN+MI+GY + D
Sbjct: 66 AVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLF 125
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
A+ LFR+M + G T+ CVLS G L G +H Y E+ E D+
Sbjct: 126 KEAIELFREM--QIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSI--EMDLNA 181
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG- 315
AL+ MYSKCG + AL IF + + ++ +W+A+ +G+A++G+ ++A+ L M
Sbjct: 182 RNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISD 241
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
++PN +TF + AC H G V++GL+ F+ M + + P I+HY C+VDLLGRA L EA
Sbjct: 242 IRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEA 301
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
FI +PI+PD ++WRSLL AC HG++ L E K + +L+P C + V
Sbjct: 302 EKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPR------RCGAR--VL 353
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSN+YASA RW DV+ VRK M +R++ +PG S ++
Sbjct: 354 LSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVE 389
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/410 (32%), Positives = 223/410 (54%), Gaps = 23/410 (5%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVL-VFAYWVS--KGLLTFDDFTYVFALGSCARFCS 121
+F + + +N +I + ++ + +VS + + DDFTY + +CA
Sbjct: 397 IFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA---G 453
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L G +IH + K G + V + L+ Y + +K+ D++ +++ +WN++
Sbjct: 454 QQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSI 513
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I+G+ SQ + NA F ML GV P + T VL V + + +E G +H
Sbjct: 514 ISGFSSQKQSE-----NAQRYFSQMLE--MGVIPDNFTYATVLDVCANMATIELGKQIHA 566
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K +DV+I + LVDMYSKCG + ++ L+F + +++ +TW+AM A HG G
Sbjct: 567 QILKLNL--HSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHG 624
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+AI+L + M+ VKPN F S+ AC H G V++GLH F M+S +G++PH++HYSC
Sbjct: 625 EQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSC 684
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDLLGR+ + EA I + + D ++WR+LLS C + G+V + EK LLQL P+
Sbjct: 685 MVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ- 743
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V L+N+YA+ W +V +R MK +++ EPG S ++
Sbjct: 744 -------DSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIE 786
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 177/405 (43%), Gaps = 47/405 (11%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVH------------FVFTHFD 70
KQ HAQ+I + P +Y L+Q YC + K+ +F + +
Sbjct: 26 KQAHAQMIVTSF-VPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAE 84
Query: 71 PPNLFLFNTLIRCTPPQDSVL---VFAYWVSKGL---------------LTFDDFTYVFA 112
N+ +L P +D V + + ++ G+ + D T+
Sbjct: 85 IGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVV 144
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L +C+ + LG Q+H + GF +V+ + L+ Y+ K + ++F +MP
Sbjct: 145 LKACS---GIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPE 201
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R+ W+A+I GY D L LF+DML GV + +T V + L
Sbjct: 202 RNLVCWSAVIAGYVQ-----NDRFIEGLKLFKDMLKVGMGV--SQSTYASVFRSCAGLSA 254
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
+ G +HG+ K+ + D IGTA +DMY+KC + +A +F+ + ++ A+
Sbjct: 255 FKLGTQLHGHALKSDF--AYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAII 312
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G A +G +A+ + S++ + + ++ + AC EG+ L + K G+
Sbjct: 313 VGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLH-GLAVKCGL 371
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+I + I+D+ G+ G L EA + + DA+ W ++++A
Sbjct: 372 GFNICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAA 415
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 32/305 (10%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
FT+ L C+ +L+ G+Q H + F+ + VA L+ FY + +++ KV
Sbjct: 7 FTFSHILQKCSNLKALNP---GKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKV 63
Query: 167 FDQMPMRSSATWNAMINGYCS-----------QSKKAKD-CAFNALV-------LFR--- 204
FD+MP R +WN MI GY + +D ++N+L+ + R
Sbjct: 64 FDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSI 123
Query: 205 DMLVDVSGVK-PTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
++ V + +K P D T VL S + G VH + + ENDV G+ALVD
Sbjct: 124 EIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGF--ENDVVTGSALVD 181
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKC LD A IF M E+N++ W+A+ G + + E ++L M G+ + T
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241
Query: 323 FTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+ S+F +C + G L + +KS + + I + +D+ + + +A+
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG--TATLDMYAKCDRMSDAWKVFNT 299
Query: 382 IPIKP 386
+P P
Sbjct: 300 LPNPP 304
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 137/295 (46%), Gaps = 24/295 (8%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY SCA LS LG Q+H H K F ++ ++ T + YA +S KVF
Sbjct: 241 TYASVFRSCA---GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVF 297
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ +P ++NA+I GY Q D AL +F+ + + + + ++ L+
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQ-----DQGLKALEIFQSL--QRTYLSFDEISLSGALTAC 350
Query: 228 SQL-GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S + G LE G +HG K ++ + ++DMY KCG L A IF M ++ +
Sbjct: 351 SVIKGHLE-GIQLHGLAVKCGL--GFNICVANTILDMYGKCGALVEACTIFDDMERRDAV 407
Query: 287 TWTAMATGMAIHGKGNEAIRLLD---SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+W A+ +A H + E ++ L SM ++P+ T+ S+ AC + G+ +
Sbjct: 408 SWNAI---IAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIH 464
Query: 344 DNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ KS G++ + S +VD+ G+ G L EA + K + W S++S
Sbjct: 465 GRIVKSGMGLDWFVG--SALVDMYGKCGMLMEAEKIHDRLEEKT-TVSWNSIISG 516
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 242/452 (53%), Gaps = 31/452 (6%)
Query: 25 KQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQIH I TN + + LI Y + ++ V F +FD L +N ++
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAE--VLFGRNNFD---LVAWNAMMSG 498
Query: 84 -TPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
T D ++ +FA +G + DDFT L +C +++ G+Q+H + K G
Sbjct: 499 YTQSHDGHKTLELFALMHKQGERS-DDFTLATVLKTCGFLFAINQ---GKQVHAYAIKSG 554
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ ++ V++ ++ Y D+S+ + FD +P+ W +I+G ++ + A
Sbjct: 555 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEER-----A 609
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L +F M + GV P + T+ + SS L LE G +H K +D F+GT+
Sbjct: 610 LHVFSQM--RLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALK--LNCTSDPFVGTS 665
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMY+KCG +D+A +F R+ N+ W AM G+A HG+G EA++L M G+KP+
Sbjct: 666 LVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPD 725
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF + +AC H+GLV E +M +G++P I+HYSC+ D LGRAG ++EA N I
Sbjct: 726 KVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLI 785
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ ++ A ++R+LL+AC V GD G++V LL+L+P S +V LSN+
Sbjct: 786 DSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP--------LDSSAYVLLSNM 837
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YA+A +W +++ R MK +V+ +PG S ++
Sbjct: 838 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 869
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 20/305 (6%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
L D T++ L + R L +L LG+Q+H K G + V+ +LI+ Y + I
Sbjct: 318 LECDQVTFILVLATAVR---LDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIG 374
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+ VF+ M R +WN++I G +QS D A+ LF +L G+KP TM
Sbjct: 375 LARTVFNNMSERDLISWNSVIAG-IAQS----DLEVEAVCLFMQLL--RCGLKPDHYTMT 427
Query: 222 CVLSVSSQLGL-LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VL +S L L +H + KT + D F+ TAL+D YS+ C+ A ++F R
Sbjct: 428 SVLKAASSLPEGLSLSKQIHVHAIKTNNVA--DSFVSTALIDAYSRNRCMKEAEVLFGR- 484
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG- 339
+++ W AM +G G++ + L M G + + T ++ C + +G
Sbjct: 485 NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGK 544
Query: 340 -LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+H + +KS + ++ + S I+D+ + G + A IP+ PD + W +L+S C
Sbjct: 545 QVHAY-AIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTLISGC 600
Query: 399 NVHGD 403
+G+
Sbjct: 601 IENGE 605
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 4/206 (1%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S S L LG+ H + + LI Y+ ++ ++VFD+MP R +WN+
Sbjct: 58 STSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNS 117
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++ Y S+ + A +LFR + DV V + T+ +L + G + H
Sbjct: 118 ILAAYAQSSEGVVENVKEAFLLFRILRQDV--VYTSRMTLSPMLKLCLHSGYVCASESFH 175
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY K + D F+ ALV++Y K G + ++F M ++V+ W M G
Sbjct: 176 GYACKIGL--DGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGF 233
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSL 326
EAI L + G+ PN +T L
Sbjct: 234 KEEAIDLSSAFHTSGLHPNEITLRLL 259
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 179 NAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
N +++GY + ++AL+ F DM+ S ++ T + VL+ + +L L G
Sbjct: 291 NKILSGYLHAGQ------YSALLKCFMDMVE--SDLECDQVTFILVLATAVRLDSLALGQ 342
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
VH K + + + +L++MY K + A +F+ M E+++++W ++ G+A
Sbjct: 343 QVHCMALKLGL--DLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQ 400
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
EA+ L + CG+KP+ T TS+ A A + EGL L
Sbjct: 401 SDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKA---ASSLPEGLSL 442
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 212/382 (55%), Gaps = 21/382 (5%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
+F + + +G + + +T++ LGSC+ L + GRQ+H H+ K N V T LI
Sbjct: 503 IFYHMLEEGFIP-NMYTFISILGSCS---CLFDVHYGRQVHAHIIKNQLDDNNFVCTALI 558
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
YA + F+++ +R TW +I Y ++ K AL FR M +
Sbjct: 559 DMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEK-----ALNYFRQMQQE-- 611
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
GVKP + T+ LS S L LE G +H + K+ ++ +D+F+G+ALVDMY+KCGC++
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV--SDMFVGSALVDMYAKCGCME 669
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F + ++ + W + G A +G+GN+A+ M D G+ P+ VTFT + +AC
Sbjct: 670 EAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
H GLVEEG F++M +G+ P + H +C+VD+LGR G +E +FI + + +A++W
Sbjct: 730 HQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIW 789
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
++L A +H ++ LGEK L +LQPE ++ LSNI+A+ RW DV+
Sbjct: 790 ETVLGASKMHNNLVLGEKAANKLFELQPE--------EESSYILLSNIFATEGRWDDVKR 841
Query: 452 VRKQMKVKRVETEPGSSILQTT 473
VR M K V+ EPG S ++
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEAN 863
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 177/379 (46%), Gaps = 26/379 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
K IH ++ + + L+ L+ +Y A + + V ++ + LI+
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVY----AKCRYSAYARLVLAKMPDRDVVSWTALIQG 187
Query: 84 TPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ DS+ +F ++G++ ++FT L +C+ +L LG+Q+H K G
Sbjct: 188 LVAEGFANDSIYLFQEMQNEGIMP-NEFTLATGLKACSLCMALD---LGKQMHAQAFKLG 243
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ ++ V + L+ YA +I K+F MP ++ TWN ++NGY +
Sbjct: 244 LLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD-----VTGV 298
Query: 200 LVLFRDML-VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
L LF M+ +DV K + T+ VL + L+ G +H + K Y E + FIG
Sbjct: 299 LKLFCSMMELDV---KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY--EGNEFIGC 353
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
LVDMYSKCG +A+ +F +++ +++ W+A+ T + G+ E+I+L MR P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N T SL +A + G ++ G + + K+G E + + +V + + G + +
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACV-WKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472
Query: 379 IMGIPIKPDAILWRSLLSA 397
+ + D I W + LS
Sbjct: 473 YESM-VDRDLISWNAYLSG 490
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 18/307 (5%)
Query: 96 WVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
W SK L + Y L CA S +L + + IH + K + + +L++ YA
Sbjct: 106 WSSKKKLKY----YSSMLRECA---SKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYA 158
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ + + V +MP R +W A+I G A+ A +++ LF++M + G+ P
Sbjct: 159 KCRYSAYARLVLAKMPDRDVVSWTALIQGLV-----AEGFANDSIYLFQEMQNE--GIMP 211
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
+ T+ L S L+ G +H K + D+F+G+ALVD+Y+KCG ++ A
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLL--DLFVGSALVDLYAKCGEIELASK 269
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M E+N +TW + G A G ++L SM + VK N T T++ C ++
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+++G + ++ K G E + +VD+ + G +A I KPD ++W +L+
Sbjct: 330 LKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387
Query: 396 SACNVHG 402
+ + G
Sbjct: 388 TCLDQQG 394
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 37/326 (11%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT L CA +L G+ IH + K G+ N + L+ Y+
Sbjct: 313 NEFTLTTVLKGCANSKNLKQ---GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF + W+A+I Q + + L+ D L P T+ +L
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL-------PNQYTICSLL 422
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++ G L++G +H + K Y E DV + ALV MY K GC+ + ++ M +++
Sbjct: 423 SAATNTGNLQYGQSIHACVWK--YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRD 480
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGLVEEGLHLF 343
+++W A +G+ G + + + M + G PN TF S+ +C C LF
Sbjct: 481 LISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC----------LF 530
Query: 344 DNMKSKWGVEPHI-------KHYSC--IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
D + V HI ++ C ++D+ + +LE+A + ++ D W +
Sbjct: 531 DVHYGR-QVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVI 588
Query: 395 LSACNVHGDVALGEKVGKILLQLQPE 420
++ + GEK Q+Q E
Sbjct: 589 ITN---YAQTNQGEKALNYFRQMQQE 611
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 212/382 (55%), Gaps = 21/382 (5%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
+F + + +G + + +T++ LGSC+ L + GRQ+H H+ K N V T LI
Sbjct: 503 IFYHMLEEGFIP-NMYTFISILGSCS---CLFDVHYGRQVHAHIIKNQLDDNNFVCTALI 558
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
YA + F+++ +R TW +I Y ++ K AL FR M +
Sbjct: 559 DMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEK-----ALNYFRQMQQE-- 611
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
GVKP + T+ LS S L LE G +H + K+ ++ +D+F+G+ALVDMY+KCGC++
Sbjct: 612 GVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV--SDMFVGSALVDMYAKCGCME 669
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F + ++ + W + G A +G+GN+A+ M D G+ P+ VTFT + +AC
Sbjct: 670 EAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS 729
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
H GLVEEG F++M +G+ P + H +C+VD+LGR G +E +FI + + +A++W
Sbjct: 730 HQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIW 789
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
++L A +H ++ LGEK L +LQPE ++ LSNI+A+ RW DV+
Sbjct: 790 ETVLGASKMHNNLVLGEKAANKLFELQPE--------EESSYILLSNIFATEGRWDDVKR 841
Query: 452 VRKQMKVKRVETEPGSSILQTT 473
VR M K V+ EPG S ++
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEAN 863
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 177/379 (46%), Gaps = 26/379 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
K IH ++ + + L+ L+ +Y A + + V ++ + LI+
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVY----AKCRYSAYARLVLAKMPDRDVVSWTALIQG 187
Query: 84 TPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ DS+ +F ++G++ ++FT L +C+ +L LG+Q+H K G
Sbjct: 188 LVAEGFANDSIYLFQEMQNEGIMP-NEFTLATGLKACSLCMALD---LGKQMHAQAFKLG 243
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ ++ V + L+ YA +I K+F MP ++ TWN ++NGY +
Sbjct: 244 LLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD-----VTGV 298
Query: 200 LVLFRDML-VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
L LF M+ +DV K + T+ VL + L+ G +H + K Y E + FIG
Sbjct: 299 LKLFCSMMELDV---KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY--EGNEFIGC 353
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
LVDMYSKCG +A+ +F +++ +++ W+A+ T + G+ E+I+L MR P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N T SL +A + G ++ G + + K+G E + + +V + + G + +
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACV-WKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472
Query: 379 IMGIPIKPDAILWRSLLSA 397
+ + D I W + LS
Sbjct: 473 YESM-VDRDLISWNAYLSG 490
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 18/307 (5%)
Query: 96 WVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
W SK L + Y L CA S +L + + IH + K + + +L++ YA
Sbjct: 106 WSSKKKLKY----YSSMLRECA---SKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYA 158
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ + + V +MP R +W A+I G A+ A +++ LF++M + G+ P
Sbjct: 159 KCRYSAYARLVLAKMPDRDVVSWTALIQGLV-----AEGFANDSIYLFQEMQNE--GIMP 211
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
+ T+ L S L+ G +H K + D+F+G+ALVD+Y+KCG ++ A
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLL--DLFVGSALVDLYAKCGEIELASK 269
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M E+N +TW + G A G ++L SM + VK N T T++ C ++
Sbjct: 270 MFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKN 329
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+++G + ++ K G E + +VD+ + G +A I KPD ++W +L+
Sbjct: 330 LKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDIVVWSALI 387
Query: 396 SACNVHG 402
+ + G
Sbjct: 388 TCLDQQG 394
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 37/326 (11%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT L CA +L G+ IH + K G+ N + L+ Y+
Sbjct: 313 NEFTLTTVLKGCANSKNLKQ---GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAI 369
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF + W+A+I Q + + L+ D L P T+ +L
Sbjct: 370 GVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL-------PNQYTICSLL 422
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++ G L++G +H + K Y E DV + ALV MY K GC+ + ++ M +++
Sbjct: 423 SAATNTGNLQYGQSIHACVWK--YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRD 480
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGLVEEGLHLF 343
+++W A +G+ G + + + M + G PN TF S+ +C C LF
Sbjct: 481 LISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC----------LF 530
Query: 344 DNMKSKWGVEPHI-------KHYSC--IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
D + V HI ++ C ++D+ + +LE+A + ++ D W +
Sbjct: 531 DVHYGR-QVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVI 588
Query: 395 LSACNVHGDVALGEKVGKILLQLQPE 420
++ + GEK Q+Q E
Sbjct: 589 ITN---YAQTNQGEKALNYFRQMQQE 611
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 234/447 (52%), Gaps = 44/447 (9%)
Query: 42 YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGL 101
Y+ + T ++S ++ VF P P +++ +F + ++
Sbjct: 417 YSSTAPVPATARSSTPPSRTALKVFDQSPAPWRAFLKAYSHGPFPLEALHLFKH--ARQH 474
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
L D F + F L +CA L G Q+H V ++GF F+ V T LI+ Y ++ +
Sbjct: 475 LADDTFVFTFVLKACA---GLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLV 531
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSK-------------------------KAKDCA 196
+KVFD+MP+++ +WN MI G+ + + C
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591
Query: 197 F-NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
+ AL L R M+ G+ P++ T++ V+ S LG + G ++GY EK M +D
Sbjct: 592 YAEALTLLRHMMA--GGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIM--SDAR 647
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+G +L+D+Y+K G + N+L +F M ++ N+++WT++ +G A+HG EA+ L MR
Sbjct: 648 VGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRA 707
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G+KPN +TF S+ AC H GLVE+GL F +M ++ ++P IKH+ CI+D+LGRAG L E
Sbjct: 708 GIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCE 767
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A I G+P++ + +WR LL C+ +G+VA+GE+ K++ L+ E + DF
Sbjct: 768 AEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERE--------SGGDFA 819
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRV 461
LSN+ R+ D E RK + +++
Sbjct: 820 VLSNVLTELGRFSDAEQARKLLDQRKI 846
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 201/356 (56%), Gaps = 21/356 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+C + L ++ + + N + +IH YA ++ S KK+FDQ+P + +W
Sbjct: 556 YCRIGQLQSAEKVFSQMKDK----NTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISW 611
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
++MI Y SQ+ D +L LFR M + VKP + VLS + LG L+ G
Sbjct: 612 SSMICAY-SQASHFSD----SLELFRQM--QRAKVKPDAVVIASVLSACAHLGALDLGKW 664
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H Y+ + + D + +L+DM++KCGC+ AL +F+ M EK+ L+W ++ G+A +
Sbjct: 665 IHDYVRRNNI--KTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANN 722
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G +EA+ + SM G +PN VTF + AC + LV+EGL F+ MK+ +EP +KH
Sbjct: 723 GFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKH 782
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C+V +L RAG LE+A NFI +P+ PD ++WR LL AC HG+VA+ E K L +L
Sbjct: 783 YGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELD 842
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
P S D++ LSNIYASA+RW D +VR+ M V P S++ + +
Sbjct: 843 PS--------NSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVDSAS 890
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 200/344 (58%), Gaps = 20/344 (5%)
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NA 199
M NV+ +I +A +I + +FDQMP R+ +W +I+GY + C + A
Sbjct: 3 MKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGY------TRACLYAEA 56
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ LFR M+ G+ P++ T++ V+ S LG + G +HGY K M +D +G +
Sbjct: 57 VALFRHMMA--GGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIM--SDARVGNS 112
Query: 260 LVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
L+D+Y+K G + N+L +F M ++ N+++WT++ +G A+HG EA+ L MR G++P
Sbjct: 113 LIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRP 172
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +TF S+ AC H GLVE+GL F +M ++ ++P IKH+ CI+D+LGRAG L EA
Sbjct: 173 NRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQI 232
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I G+P++ + I+WR LL C+ +G+V +G++ K++ L+ E + DF LSN
Sbjct: 233 IEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERE--------SGGDFAVLSN 284
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDGFR 482
+ R+ D E RK + +++ PG +++ T + ++ +
Sbjct: 285 VLNELGRFSDAEQARKLLDERKIVKVPGLALVVTRSFVMMEAVK 328
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 236/498 (47%), Gaps = 64/498 (12%)
Query: 1 MLSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQST 59
++ +PG AL+ ++ +K++HA L+ + L + +++I+ Y +++
Sbjct: 307 IVKVPG---LALVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSD---L 360
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
H VF + P FL+NTL+R P+D+++ + KG+ D+ T+ F L +
Sbjct: 361 VFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKP-DNMTFPFVLKA 419
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
CA+ + G Q+H HV K GF+ ++ V+ +LIH YA+ D+ + +FD+M ++
Sbjct: 420 CAKTYAPKE---GEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDV 476
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WN++I GY SQ + K+ L LF L+ V+ TMV V+S + LG
Sbjct: 477 VSWNSLIGGY-SQRNRFKE----VLALFE--LMQAEEVQADKVTMVKVISACTHLGDWSM 529
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT-------- 287
C+ Y+E+ E DV++G L+D Y + G L +A +FS+M++KN +T
Sbjct: 530 ADCMVRYIERNHI--EVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAY 587
Query: 288 -----------------------WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
W++M + ++++ L M+ VKP+AV
Sbjct: 588 AKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIA 647
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
S+ +AC H G ++ G + D ++ ++ + ++D+ + G ++EA +
Sbjct: 648 SVLSACAHLGALDLGKWIHDYVRRN-NIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEE 706
Query: 385 KPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNI 439
K D + W S++ +G D AL + +P EVTF+ V AC ++ V
Sbjct: 707 K-DTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEG-- 763
Query: 440 YASAERWPDVESVRKQMK 457
ER V ++ QMK
Sbjct: 764 LDHFERMKTVHNLEPQMK 781
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 16/202 (7%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSATWN 179
+L + +G +H + K+G M + V +LI YA + + KVFD+M R+ +W
Sbjct: 84 NLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWT 143
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++I+G+ + AL LF +M +G++P T + V++ S GL+E G
Sbjct: 144 SIISGFAMHG-----LSVEALELFAEM--RRAGIRPNRITFLSVINACSHGGLVEQGLAF 196
Query: 240 HGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAI 297
M + + PE F ++DM + G L A I + E NV+ W + +
Sbjct: 197 FKSMVYEYNIDPEIKHF--GCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSK 254
Query: 298 HGK---GNEAIRLL-DSMRDCG 315
+G+ G AI+++ D R+ G
Sbjct: 255 YGEVEMGKRAIKMISDLERESG 276
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP +V ++ ++ G ++ A L+F +M +NV++WT + G EA+ L
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAG--LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
M G+ P+ +T ++ A + G L+ E LH + K G+ + + ++DL
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGY---CVKKGIMSDARVGNSLIDLY 117
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G ++ + + + + + W S++S +HG
Sbjct: 118 AKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHG 153
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 30/234 (12%)
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
+HF +L LF + R D+V++ + L +CA L L
Sbjct: 622 SHF-SDSLELFRQMQRAKVKPDAVVIAS-----------------VLSACAH---LGALD 660
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LG+ IH +V + + ++ +LI +A + +VF +M + + +WN++I G
Sbjct: 661 LGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLA 720
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ + + AL +F ML + G +P + T + VL + L++ G H KT
Sbjct: 721 NNGFEDE-----ALNIFYSMLTE--GPRPNEVTFLGVLIACANKRLVQEG-LDHFERMKT 772
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHG 299
+ E + +V + S+ G L+ A + M + + W + HG
Sbjct: 773 VHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRILLGACKTHG 826
>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 565
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 210/360 (58%), Gaps = 19/360 (5%)
Query: 111 FALGSC-ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ LGS + L ++ +G+QIH + K G +++V ++L H Y N + G+ V
Sbjct: 92 YTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRS 151
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP+R+ WN +I G C L L++ ++ +SG +P T V VLS S
Sbjct: 152 MPVRNLVAWNTLIMGNAQNG-----CPETVLYLYK--MMKISGCRPNKITFVTVLSSCSD 204
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L + G +H E + V + ++L+ MYSKCGCL +A FS +++ + W+
Sbjct: 205 LAIRGQGQQIHA--EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 262
Query: 290 AMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+M + HG+G+EAI L ++M + ++ N V F +L AC H+GL ++GL LFD M
Sbjct: 263 SMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVE 322
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+G +P +KHY+C+VDLLGRAG L++A I +PIK D ++W++LLSACN+H + + +
Sbjct: 323 KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQ 382
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+V K +LQ+ P D AC +V L+N++ASA+RW DV VRK M+ K V+ E G S
Sbjct: 383 RVFKEILQIDPN----DSAC----YVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 434
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 15/262 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--AL 200
N + + LI+ Y D+ + +KVFD+MP R TWNAMI G FN L
Sbjct: 24 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ-------FEFNEEGL 76
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFR+M G P + T+ V S S+ L + G +HGY K Y E D+ + ++L
Sbjct: 77 SLFREM--HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK--YGLELDLVVNSSL 132
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY + G L + ++ M +N++ W + G A +G + L M+ G +PN
Sbjct: 133 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 192
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF ++ ++C + +G + K G + S ++ + + G L +A
Sbjct: 193 ITFVTVLSSCSDLAIRGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 251
Query: 381 GIPIKPDAILWRSLLSACNVHG 402
D ++W S++SA HG
Sbjct: 252 ERE-DEDEVMWSSMISAYGFHG 272
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S+ S+LG V+G M K YM N L++ Y + G L NA +F M ++
Sbjct: 1 MSMYSKLGDFPSAVAVYGRMRKKNYMSSN------ILINGYVRAGDLVNARKVFDEMPDR 54
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+ TW AM G+ E + L M G P+ T S+F+ V G +
Sbjct: 55 KLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIH 114
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
K+G+E + S + + R G L++ I +P++ + + W +L+
Sbjct: 115 -GYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 164
>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
Length = 563
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 210/360 (58%), Gaps = 19/360 (5%)
Query: 111 FALGSC-ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ LGS + L ++ +G+QIH + K G +++V ++L H Y N + G+ V
Sbjct: 90 YTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRS 149
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP+R+ WN +I G C L L++ ++ +SG +P T V VLS S
Sbjct: 150 MPVRNLVAWNTLIMGNAQNG-----CPETVLYLYK--MMKISGCRPNKITFVTVLSSCSD 202
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L + G +H E + V + ++L+ MYSKCGCL +A FS +++ + W+
Sbjct: 203 LAIRGQGQQIHA--EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 260
Query: 290 AMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+M + HG+G+EAI L ++M + ++ N V F +L AC H+GL ++GL LFD M
Sbjct: 261 SMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVE 320
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+G +P +KHY+C+VDLLGRAG L++A I +PIK D ++W++LLSACN+H + + +
Sbjct: 321 KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQ 380
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+V K +LQ+ P D AC +V L+N++ASA+RW DV VRK M+ K V+ E G S
Sbjct: 381 RVFKEILQIDPN----DSAC----YVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 432
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 15/262 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--AL 200
N + + LI+ Y D+ + +KVFD+MP R TWNAMI G FN L
Sbjct: 22 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ-------FEFNEEGL 74
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFR+M G P + T+ V S S+ L + G +HGY K Y E D+ + ++L
Sbjct: 75 SLFREM--HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK--YGLELDLVVNSSL 130
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY + G L + ++ M +N++ W + G A +G + L M+ G +PN
Sbjct: 131 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 190
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF ++ ++C + +G + K G + S ++ + + G L +A
Sbjct: 191 ITFVTVLSSCSDLAIRGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 249
Query: 381 GIPIKPDAILWRSLLSACNVHG 402
D ++W S++SA HG
Sbjct: 250 ERE-DEDEVMWSSMISAYGFHG 270
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
S+LG V+G M K YM N L++ Y + G L NA +F M ++ + T
Sbjct: 3 SKLGDFPSAVAVYGRMRKKNYMSSN------ILINGYVRAGDLVNARKVFDEMPDRKLTT 56
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W AM G+ E + L M G P+ T S+F+ V G +
Sbjct: 57 WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIH-GYT 115
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
K+G+E + S + + R G L++ I +P++ + + W +L+
Sbjct: 116 IKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR-NLVAWNTLI 162
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 215/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
DDF+ V L +C R L L G++IH V + G N VA +L+ Y G+
Sbjct: 516 DDFSIVSLLLACGR---LGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGR 572
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
F++M ++S WNAM++GY SQ++ + AL LFR ML D G++P + + +L
Sbjct: 573 TYFERMGDKNSVCWNAMLSGY-SQNELPNE----ALSLFRQMLSD--GLEPDEIAIASIL 625
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
SQL L G VH + K M +N F+ +L+DMY+K G L ++ IF+R+ K
Sbjct: 626 GACSQLSALGLGKEVHCFALKNSLMEDN--FVACSLMDMYAKSGFLGHSQRIFNRLNGKE 683
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V +W M TG +HG+GN+A+ L + M+ +P+ TF + ACCHAGLV EGL+
Sbjct: 684 VASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLA 743
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M++ + +EP ++HY+C++D+LGRAG L EA NFI +P +PDA +W SLLS+ + D+
Sbjct: 744 QMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDL 803
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GEK + LL L+ A ++ ++ LSN+YA+A +W V VR++MK ++ +
Sbjct: 804 EMGEKFAEKLLALE--------ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKD 855
Query: 465 PGSSILQ 471
G S ++
Sbjct: 856 VGCSWIE 862
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 16/274 (5%)
Query: 63 HFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF NLF +N L+ R +++ F +S D+FT+ + +C
Sbjct: 163 RLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTG 222
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
C + LG+ +H K G + ++ V +I Y + ++FD+MP ++ +W
Sbjct: 223 KCDIH---LGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISW 279
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N++I G+ A FR +L G+ P TMV +L V S G ++ G
Sbjct: 280 NSLIRGFSENG-----FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMV 334
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+HG K + E + + AL+DMYSKCGCL A ++F ++ K+V++W +M +
Sbjct: 335 IHGMAVKLGLVHE--LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSRE 392
Query: 299 GKGNEAIRLLDS--MRDCGVKPNAVTFTSLFAAC 330
G E LL M + ++ N VT +L AC
Sbjct: 393 GFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 146/320 (45%), Gaps = 30/320 (9%)
Query: 91 LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL 150
L+ W+ + L+ ++ T + L +C L +L R +H + + F + L+
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPACLEESELLSL---RALHGYSLRHSFQYKELINNAF 457
Query: 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK--KAKDCAFNALVLFRDMLV 208
I YA + + VF M +S ++WNA+I G+ KA D F L
Sbjct: 458 IAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRL------ 511
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
G+ P D ++V +L +LGLL++G +HG++ + E + F+ +L+ +Y C
Sbjct: 512 ---GILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGL--EMNSFVAVSLLSLYFHCS 566
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
F RM +KN + W AM +G + + NEA+ L M G++P+ + S+
Sbjct: 567 KPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626
Query: 329 ACCH---AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA---GHLEEAYNFIMGI 382
AC GL +E +H F S +E + S ++D+ ++ GH + +N + G
Sbjct: 627 ACSQLSALGLGKE-VHCFALKNSL--MEDNFVACS-LMDMYAKSGFLGHSQRIFNRLNGK 682
Query: 383 PIKPDAILWRSLLSACNVHG 402
+ W +++ VHG
Sbjct: 683 EVAS----WNVMITGFGVHG 698
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 12/267 (4%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F + ++ T LI Y+ + VFD++ ++ WNA+++GY + D A +
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRN--ELYDEAIHT 196
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ L+ V+ +P + T C++ + + G VHG K + D+F+G A
Sbjct: 197 FL----ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIM--DLFVGNA 250
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVK 317
++ +Y KCG LD A+ +F +M E+N+++W ++ G + +G EA R S+ + G+
Sbjct: 251 MIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI 310
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ T +L C G V+ G+ + M K G+ + + ++D+ + G L EA
Sbjct: 311 PDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAI 369
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDV 404
I K + W S++ A + G V
Sbjct: 370 LFRKIENKS-VVSWNSMIGAYSREGFV 395
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 102/422 (24%), Positives = 170/422 (40%), Gaps = 55/422 (13%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDD------FTYVFALGSCAR 118
+F NL +N+LIR ++ + AY + LL D T V L C+
Sbjct: 267 LFDKMPEQNLISWNSLIR-GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS- 324
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ +G IH K G + ++V LI Y+ +S +F ++ +S +W
Sbjct: 325 --GEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSW 382
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+MI Y + F L R M ++ ++ + T++ +L + L
Sbjct: 383 NSMIGAYSREG-----FVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRA 437
Query: 239 VHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HGY + +F E I A + Y+KCG L A +F M K+V +W A+ G A
Sbjct: 438 LHGYSLRHSFQYKE---LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD-----NMKSKW 350
+G +A+ M G+ P+ + SL AC GL++ G +H F M S
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554
Query: 351 GVEPHIKHYSCIVDLLGR------------------AGHLEEA--------YNFIMGIPI 384
V ++ C GR +G+ + + ++ +
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL 614
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASA 443
+PD I S+L AC+ + LG++V L+ E F VAC+ D A S +
Sbjct: 615 EPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF--VACSLMDMYAKSGFLGHS 672
Query: 444 ER 445
+R
Sbjct: 673 QR 674
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 200/330 (60%), Gaps = 17/330 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ +T++ Y D+ + +FD+MP+++ +W +++GY K A +A+
Sbjct: 73 NVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYA-----VKGLAKDAIRS 127
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F M + +G+KP D T++ +L+ ++ GLL G VH +E+ Y + V + ALVD
Sbjct: 128 FEQM--EEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRY--KCSVNVSNALVD 183
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY+KCG +D AL +F+ M +K++++W M G+A+HG G +A++L MR G +P+ VT
Sbjct: 184 MYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVT 243
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
++ AC HAG V+EG+ F+NM+ +G+ PHI+HY C+VDLLGR G L+EAY + +
Sbjct: 244 LVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSM 303
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P+ ++W +LL AC +H V L E+V L +L+P ++ LSNI+AS
Sbjct: 304 PVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPS--------DPGNYSLLSNIFAS 355
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQT 472
A W V +VR QMK ++ G+S ++
Sbjct: 356 AGDWSSVANVRLQMKNFGIQKPSGASSIEV 385
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 59/293 (20%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ ++I ++S K+FD+MPM+ + +WN +++GY + K AF
Sbjct: 11 DVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK--AF----- 63
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
GL E MPE +V + +V
Sbjct: 64 ----------------------------GLFE-------------SMPERNVVSWSTMVS 82
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
Y K G ++ A ++F RM KN+++WT + +G A+ G +AIR + M + G+KP+ T
Sbjct: 83 GYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGT 142
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
S+ A+C +GL+ G + +++ + + + + +VD+ + G ++ A + G+
Sbjct: 143 VISILASCAESGLLGLGKRVHTSIE-RIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGM 201
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDVACT 429
K D + W +L +HG GEK ++ ++ E VT V V C
Sbjct: 202 S-KKDLVSWNCMLQGLAMHGH---GEKALQLFSIMRQEGFRPDKVTLVAVLCA 250
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+D++ F GL DD T + L SCA L LG+++H + + + +V V
Sbjct: 122 KDAIRSFEQMEEAGLKP-DDGTVISILASCAES---GLLGLGKRVHTSIERIRYKCSVNV 177
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
+ L+ YA + VF+ M + +WN M+ G K AL LF M
Sbjct: 178 SNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEK-----ALQLFSIM 232
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
+ G +P T+V VL G ++ G ME+ + + + G +VD+ +
Sbjct: 233 RQE--GFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYG-CMVDLLGR 289
Query: 267 CGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
G L A + M E NV+ W + +H A+ L + + DC
Sbjct: 290 GGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMH----NAVGLAEEVLDC 334
>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
Length = 650
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 210/360 (58%), Gaps = 19/360 (5%)
Query: 111 FALGSC-ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ LGS + L ++ +G+QIH + K G +++V ++L H Y N + G+ V
Sbjct: 177 YTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRS 236
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP+R+ WN +I G C L L++ ++ +SG +P T V VLS S
Sbjct: 237 MPVRNLVAWNTLIMGNAQNG-----CPETVLYLYK--MMKISGCRPNKITFVTVLSSCSD 289
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L + G +H E + V + ++L+ MYSKCGCL +A FS +++ + W+
Sbjct: 290 LAIRGQGQQIHA--EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 347
Query: 290 AMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+M + HG+G+EAI L ++M + ++ N V F +L AC H+GL ++GL LFD M
Sbjct: 348 SMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVE 407
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+G +P +KHY+C+VDLLGRAG L++A I +PIK D ++W++LLSACN+H + + +
Sbjct: 408 KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQ 467
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+V K +LQ+ P D AC +V L+N++ASA+RW DV VRK M+ K V+ E G S
Sbjct: 468 RVFKEILQIDPN----DSAC----YVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 519
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 15/262 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--AL 200
N + + LI+ Y D+ + +KVFD+MP R TWNAMI G FN L
Sbjct: 109 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ-------FEFNEEGL 161
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFR+M G P + T+ V S S+ L + G +HGY K Y E D+ + ++L
Sbjct: 162 SLFREM--HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK--YGLELDLVVNSSL 217
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY + G L + ++ M +N++ W + G A +G + L M+ G +PN
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF ++ ++C + +G + K G + S ++ + + G L +A
Sbjct: 278 ITFVTVLSSCSDLAIRGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 336
Query: 381 GIPIKPDAILWRSLLSACNVHG 402
D ++W S++SA HG
Sbjct: 337 ERE-DEDEVMWSSMISAYGFHG 357
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 11/230 (4%)
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
L+ VSG ++S+ S+LG V+G M K YM N L++ Y +
Sbjct: 69 LLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSN------ILINGYVR 122
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
G L NA +F M ++ + TW AM G+ E + L M G P+ T S+
Sbjct: 123 AGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSV 182
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
F+ V G + K+G+E + S + + R G L++ I +P++
Sbjct: 183 FSGSAGLRSVSIGQQIH-GYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR- 240
Query: 387 DAILWRSLLSACNVHG---DVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
+ + W +L+ +G V K+ KI ++TFV V + D
Sbjct: 241 NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 290
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 205/369 (55%), Gaps = 20/369 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T L +C R L G+ +H +R ++V ++ Y + + +
Sbjct: 210 NEGTLACVLVACGR---LGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLAR 266
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VFD++ +R +W MI+G +K AL +F +M S VKP + VL
Sbjct: 267 RVFDRLLVRDVISWTIMISGLVQCKLPSK-----ALEVFNEM--QKSRVKPDKVVLSTVL 319
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + LG LE G VH Y+E+ E DV +GT+LVDMY+KCGCL+ +L IF +M KN
Sbjct: 320 SACTSLGALESGRWVHEYIERKGI--EWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKN 377
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W A+ G A+HG G EA+ D M G+ PN V+F + ACCH+GLV+EGL LF+
Sbjct: 378 LSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFE 437
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+MK+ + + P +HY +VDLLGRAG + EAY+ +P++P W +LLSAC H V
Sbjct: 438 SMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQV 497
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+++ + + +L+ + V + LSNIYA RW DV+ VR M K ++ E
Sbjct: 498 DFSQQILRHVHELESSESGV--------YALLSNIYAVNHRWADVKRVRGLMSEKGLQKE 549
Query: 465 PGSSILQTT 473
PGSS+++
Sbjct: 550 PGSSVIEVN 558
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 143/277 (51%), Gaps = 18/277 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GRQ+H K GF+ + V L+ Y + ++VFD+M R +W A+++ +
Sbjct: 132 GRQVHAVAEKGGFLGRLPVRNALVTLYGVCGECGDARRVFDEMASRDVVSWTALVSAFVR 191
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A+ ALVL M V P + T+ CVL +LG G VHG+ +
Sbjct: 192 GGRFAE-----ALVLVGQM-----DVVPNEGTLACVLVACGRLGAARAGKAVHGW----Y 237
Query: 248 YMPEND--VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
E+D + +G A++DMY KC LD A +F R+ ++V++WT M +G+ ++A+
Sbjct: 238 LRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKAL 297
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ + M+ VKP+ V +++ +AC G +E G + + ++ K G+E + + +VD+
Sbjct: 298 EVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERK-GIEWDVHVGTSLVDM 356
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G LE + + +P+K + W +L++ +HG
Sbjct: 357 YAKCGCLETSLSIFRKMPLK-NLSSWNALINGFALHG 392
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 250/489 (51%), Gaps = 45/489 (9%)
Query: 15 LKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L+ ++ + K++HAQ+ I N +S + +L++L P + +F+ PN
Sbjct: 15 LERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHS-YPRLLFSQLHTPN 73
Query: 74 LFLFNTLIRCTP---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F + LIR P L F + K ++ FT+ +CA ++ LG Q
Sbjct: 74 PFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACA---AVRHSALGAQ 130
Query: 131 IHVH-VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--S 187
+H + GF ++ V +I Y + + VFD+MP R +W +I Y
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190
Query: 188 QSKKAKDC------------------------AFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+ A+D +AL +FR + + GV+ + T+V V
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDE--GVEIDEVTLVGV 248
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S +QLG ++ + E + + ++V +G+AL+DMYSKCG ++ A +F MRE+
Sbjct: 249 ISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRER 308
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV ++++M G AIHG+ AI+L M + GVKPN VTF + AC HAGLV++G LF
Sbjct: 309 NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLF 368
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+M+ +GV P + Y+C+ DLL RAG+LE+A + +P++ D +W +LL A +VHG+
Sbjct: 369 ASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGN 428
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ E K L +L+P+ +++ LSN YASA RW DV VRK ++ K ++
Sbjct: 429 PDVAEIASKRLFELEPD--------NIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKK 480
Query: 464 EPGSSILQT 472
PG S ++
Sbjct: 481 NPGWSWVEA 489
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 229/419 (54%), Gaps = 31/419 (7%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L +N++I + ++++ +F +G D+ T V LG+C
Sbjct: 185 VFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEP-DEMTLVSVLGACG--- 240
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LGR + V ++ N + + LI Y D+ S ++VFD MP + TWNA
Sbjct: 241 DLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNA 300
Query: 181 MINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+I GY A++ A N A+VLF M +G P TM+ VLS S +G L+ G V
Sbjct: 301 IITGY------AQNGASNEAIVLFNGM--REAGPHPDRVTMIEVLSACSTIGALDLGKWV 352
Query: 240 HGYM-EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ EK ++DV++ +AL+DMY+KCG LD+A+ +F M KN ++W AM + +A H
Sbjct: 353 ETHASEKGL---QHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFH 409
Query: 299 GKGNEAIRLLDSM-RDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
G+ EA+ L M +D G V+PN +TF + +AC HAGLV+EG LF++M +G+ P +
Sbjct: 410 GQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKV 469
Query: 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
+HYSC+VDL RAG L EA++ I +P KPD I+ SLL AC + +GE+V ++ L+
Sbjct: 470 EHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLE 529
Query: 417 LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
++ S ++V S IYA+ RW D +R M+ V PG S + H
Sbjct: 530 ME--------LSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAH 580
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 219/433 (50%), Gaps = 36/433 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+K + + +KQIHAQ++ N++ P L +++I L AS VF PN
Sbjct: 40 IKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIIDLKDLAYAS--------LVFNQLTKPN 91
Query: 74 LFLFNTLIR---CTPPQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLSTLWLGR 129
++ FN ++R T + V Y+ K L L ++FTY F +C ++ L G+
Sbjct: 92 IYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACG---NVRGLVHGK 148
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
H V K G + V +LI YA ++ +KVFD+M R +WN+MI+GY
Sbjct: 149 IGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMG 208
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFY 248
+ A+ LF +M + G +P + T+V VL LG L G V G+ +EK
Sbjct: 209 FTKE-----AIGLFMEMREE--GFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKM- 260
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E + ++G+AL+DMY KCG L +A +F M K+V+TW A+ TG A +G NEAI L
Sbjct: 261 --EVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLF 318
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
+ MR+ G P+ VT + +AC G ++ G + S+ G++ + S ++D+ +
Sbjct: 319 NGMREAGPHPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQHDVYVASALIDMYAK 377
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD----VALGEKVGKILLQLQP-EVTF 423
G L++A +P K + + W +++SA HG ++L ++ K +QP ++TF
Sbjct: 378 CGSLDDAVRVFESMPHK-NEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITF 436
Query: 424 VDV--ACTSEDFV 434
+ V AC V
Sbjct: 437 IGVLSACVHAGLV 449
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 204/346 (58%), Gaps = 21/346 (6%)
Query: 128 GRQIHVHVTKR----GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
GR++H ++ K G +V + LI Y+ + + G++VFD+M R+ +W AMIN
Sbjct: 248 GRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMIN 307
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY + AL LFRDM V + GV+P ++V VL S L G +HG+
Sbjct: 308 GYVENGDSDE-----ALSLFRDMQV-IDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFA 361
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGN 302
+ N+V + AL+DMYSKCG LD+A +F K+ ++W++M +G +HGKG
Sbjct: 362 VRKEL--NNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQ 419
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EAI L D M G++P+ +T + +AC +GLV EGL+++ ++ + +G+EP ++ +CI
Sbjct: 420 EAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACI 479
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VD+LGRAG L+ A +FI IP++P +W +L+S +HGD+ + E + L+QL+P+
Sbjct: 480 VDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPK-- 537
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
++V++SN+YAS+ RW V VR+ MK KR+ PG S
Sbjct: 538 ------NPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCS 577
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 188/390 (48%), Gaps = 28/390 (7%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
+Q H+++++ L A +LI Y + S VF N+FL+N+LI
Sbjct: 43 RQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHS----RLVFDSLQHKNVFLWNSLING 98
Query: 83 CTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKR 138
C + ++ +F S +L DDFT L + ++ S L L+ G+ IH +
Sbjct: 99 CVKNRLYNEAFQLFNQMCSSDVLP-DDFT----LSTLSKVSSELGALFSGKSIHGKSIRT 153
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF+ + +VA +++ Y + +KVFD+M +R+S +WN +I GY + +C F
Sbjct: 154 GFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAV----SGNCNFR 209
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSV-SSQLGLLEFGACVHGYMEKTFYM--PENDVF 255
+ + V+P T+ +L + +G ++G +H Y+ K + ++DV
Sbjct: 210 EETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVH 269
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC- 314
+G L+DMYS+ + +F RM+ +NV +WTAM G +G +EA+ L M+
Sbjct: 270 LGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVID 329
Query: 315 GVKPNAVTFTSLFAACCH-AGLVE-EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
GV+PN V+ S+ AC +GL+ +H F K + + + ++D+ + G L
Sbjct: 330 GVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKE---LNNEVSLCNALIDMYSKCGSL 386
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ A + DAI W S++S +HG
Sbjct: 387 DSARRVFEDDSLCKDAISWSSMISGYGLHG 416
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 12/210 (5%)
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
+L L RQ H + G N +AT LI YA + + VFD + ++ WN++IN
Sbjct: 38 SLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLIN 97
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
G C +++ + A LF M S V P D T+ + VSS+LG L G +HG
Sbjct: 98 G-CVKNRLYNE----AFQLFNQMC--SSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKS 150
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN- 302
+T ++ +D + +++ MY KCG D + +F M +N +W + G A+ G N
Sbjct: 151 IRTGFV--SDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNF 208
Query: 303 --EAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
E + M+ V+P+A T +SL C
Sbjct: 209 REETWEFVKQMQMDEVRPDAYTISSLLPLC 238
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 226/418 (54%), Gaps = 25/418 (5%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S + +F D + +N++ ++ P+ ++ VF + +G+ T + AL
Sbjct: 298 SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI-DPTGVTIMEAL 356
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA L L G+ +H V + ++ V +LI Y+ K + +F+ + R
Sbjct: 357 HACA---DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ +WNAMI GY + ++ AL F +M G+KP TMV V+ ++L +
Sbjct: 414 THVSWNAMILGYAQNGRVSE-----ALNCFSEM--KSLGMKPDSFTMVSVIPALAELSVT 466
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+HG + ++ + ++F+ TALVDMYSKCG + A +F + +++V+TW AM
Sbjct: 467 RHAKWIHGLIIRSCL--DKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMID 524
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G HG G A+ L D M+ V+PN +T+ S+ +AC H+GLV+EGL F +MK +G+E
Sbjct: 525 GYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLE 584
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P + HY +VDLLGRAG ++EA++FI +PI P ++ + AC +H ++ +GEK K
Sbjct: 585 PSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKK 644
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P+ V L+NIYAS +W V VRK M+ K ++ PG S+++
Sbjct: 645 LFELNPD--------EGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVE 694
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 26/344 (7%)
Query: 4 LPGH--RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTK 60
+P H + A + L+ T+ + QI +I N L + L+ +L+ L+ + ++ +
Sbjct: 43 IPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAAR 102
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDD-----FTYVFALGS 115
VF D L++T+++ S+ ++ + + +DD + + + L
Sbjct: 103 ----VFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCR--MRYDDVKPVVYNFTYLLKV 156
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C L G++IH + F NV T +++ YA + I K+FD+MP R
Sbjct: 157 CGDNADLKR---GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WN +I G+ SQ+ AK A ++ +D G +P T+V VL ++ +GLL
Sbjct: 214 VSWNTIIAGF-SQNGFAKK-ALELVLRMQD-----EGQRPDSITLVTVLPAAADVGLLMV 266
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +HGY + + V I TAL DMYSKCG ++ A LIF M +K V++W +M G
Sbjct: 267 GKSIHGYAIRAGFAKL--VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+G+ +AI + + M + G+ P VT AC G +E G
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERG 368
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 127/366 (34%), Positives = 204/366 (55%), Gaps = 19/366 (5%)
Query: 110 VFALGSCAR-FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
VFA+ S F +L G+ +H + + G + VA L+ Y +++ + +FD
Sbjct: 619 VFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFD 678
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
++ + +WN +I GY + + + LF DML+ +P TM C+L ++
Sbjct: 679 RVTNKDVISWNTLIGGYSRNNFPNE-----SFSLFSDMLLQF---RPNAVTMTCILPAAA 730
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+ LE G +H Y + ++ D + ALVDMY KCG L A ++F R+ +KN+++W
Sbjct: 731 SISSLERGREIHAYALRRGFL--EDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISW 788
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T M G +HG G AI L + MR G++P+A +F+++ ACCH+GL EG F M+
Sbjct: 789 TIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQK 848
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
++ +EP +KHY+CIVDLL R G L+EA FI +PI+PD+ +W SLL C +H +V L E
Sbjct: 849 EYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAE 908
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KV + +L+PE T +V L+NIYA AERW V+ ++ ++ + + G S
Sbjct: 909 KVADKVFKLEPENTGY--------YVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYS 960
Query: 469 ILQTTT 474
++ +
Sbjct: 961 WIEVRS 966
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 123/269 (45%), Gaps = 17/269 (6%)
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H ++ K GF V LI FYA + I VF++MP + + +WN++I+G S
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
++ A+ LF M G + T++ VL +Q G VHGY KT + E
Sbjct: 500 SE-----AIELFIRMWTQ--GQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGE 552
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ AL+DMYS C + IF M +KNV++WTAM T G ++ LL M
Sbjct: 553 TS--LANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM 610
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGR 368
G++P+ TS HA +E L ++ + G+E + + ++++ +
Sbjct: 611 VLDGIRPDVFAVTSAL----HAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVK 666
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++EEA I D I W +L+
Sbjct: 667 CRNVEEA-RLIFDRVTNKDVISWNTLIGG 694
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 129/304 (42%), Gaps = 30/304 (9%)
Query: 115 SCARFC--SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
SC C SL +L G IH + K G VA LI Y+ + +VFD M
Sbjct: 208 SCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHP 267
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R + +WN+MI G S A+ LF M G + + T++ VL + LG
Sbjct: 268 RDAISWNSMIGGCFSNGWHG-----TAVDLFSKMWSQ--GTEISSVTVLSVLPACAGLGY 320
Query: 233 LEFGACVHGYMEKTFYM--------PENDVFIGTALVDMYSKCGCLDNALLIFSRMREK- 283
G VHGY K+ + +D +G+ LV MY KCG + +A +F M K
Sbjct: 321 GLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG 380
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA-----ACCHAGLVEE 338
NV W + G A G+ E++ L M + G+ P+ + L +C GLV
Sbjct: 381 NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAH 440
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G + K G + ++ ++ + +A +P + D I W S++S C
Sbjct: 441 GYIV------KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGC 493
Query: 399 NVHG 402
+ +G
Sbjct: 494 SSNG 497
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVL 202
++ L+ Y D+ + VFD MP +++ W ++++ Y KA D A+ L
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYA----KAGDFQ-EAVSL 191
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR M GV P + CVL S LG L G +HG +EK + AL+
Sbjct: 192 FRQM--QCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGL--GQACAVANALIA 247
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
+YS+CG +++A +F M ++ ++W +M G +G A+ L M G + ++VT
Sbjct: 248 VYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVT 307
Query: 323 FTSLFAACCHA--GLVEEGLHLFDNMKSK--WGVE 353
S+ AC GL+ + +H + ++KS WG++
Sbjct: 308 VLSVLPACAGLGYGLIGKAVHGY-SVKSGLLWGLD 341
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 30/285 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF P + +N++I +V +F+ S+G T + L +CA
Sbjct: 261 VFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT-EISSVTVLSVLPACA--- 316
Query: 121 SLSTLWLGRQIHVHVTKRGFMF----------NVLVATTLIHFYASNKDISSGKKVFDQM 170
L +G+ +H + K G ++ + + + L+ Y D++S ++VFD M
Sbjct: 317 GLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAM 376
Query: 171 PMRSSA-TWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ + WN ++ GY AK F +L LF M G+ P + + C+L +
Sbjct: 377 SSKGNVHVWNLIMGGY------AKVGEFEESLSLFVQM--HELGIAPDEHAISCLLKCIT 428
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L G HGY+ K + + V AL+ Y+K + +A+L+F+RM ++ ++W
Sbjct: 429 CLSCARDGLVAHGYIVKLGFGAQCAVC--NALISFYAKSNMIGDAVLVFNRMPRQDTISW 486
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
++ +G + +G +EAI L M G + ++VT S+ AC +
Sbjct: 487 NSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQS 531
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 222/403 (55%), Gaps = 45/403 (11%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IR P L F + + + D F+ +F L +CA +LS L +H H+TK GF
Sbjct: 31 IRNAPSLHKALAFYSQMHRQSVPHDSFSILFMLKACASSNNLSIL---HHLHAHITKLGF 87
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK---------- 190
+V VAT+L+H Y + + VFD+MP ++S TWN MI+GY
Sbjct: 88 TTHVFVATSLLHSYVLH-SFQLARLVFDEMPHKNSVTWNTMISGYSKAGDVHTARQLFDR 146
Query: 191 -KAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
++D A AL+LF+DM+++ G+ P +L+ + +G L
Sbjct: 147 MPSRDLASWSAMIAAYINNRNYRGALLLFQDMIIN--GINPDQMAAGSILNGCAHMGSLG 204
Query: 235 F--GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
G VHG++ K + E ++ +GT LVDMY+KCG L A IF+ M E+NV TWTA+
Sbjct: 205 LLAGKSVHGFVVKNRW--ELNLELGTVLVDMYAKCGFLKYACQIFNLMSERNVRTWTALI 262
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G+A HG EA+ L ++MR GV+PN TFT + +AC HAGLV+EG F NM + G+
Sbjct: 263 CGLAHHGCCKEALVLFETMRHEGVEPNEFTFTGVLSACVHAGLVQEGRKYF-NMIEECGL 321
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV-G 411
E I+HY C VDLLGR+G LEEAY I + ++P+ I+W SLLSAC H L E+V
Sbjct: 322 EIRIQHYGCFVDLLGRSGLLEEAYGVIKSMRLEPNVIVWSSLLSACKQHKSFDLAERVIE 381
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
+IL +++P+ + + +S++Y ++W D E++R
Sbjct: 382 QILEKIEPD-------NHAGVYSLVSDLYVLQDKWDDAENIRN 417
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 168/496 (33%), Positives = 247/496 (49%), Gaps = 69/496 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYA----QLIQ--LYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
+K+ H Q+ LKSP L+ LI LY + S VF P+L
Sbjct: 33 ELKKTHTQI----LKSPTLHTGDQYYLITRLLYVCSFSYYGSFSYATNVFHMIKNPDLRA 88
Query: 77 FNTLIRCTPPQDS---------VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
+N +IR +S ++++ K ++ + T+ F L C ++ +T
Sbjct: 89 YNIMIRAYISMESGDDTHFCKALMLYKQMFCKDIVP-NCLTFPFLLKGCTQWLDGAT--- 144
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING--- 184
G+ IH V K GF+ +V VA +LI Y + +S+ +KVFD+M + TWN+M+ G
Sbjct: 145 GQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLR 204
Query: 185 ---------------------------YCSQSKKAKDCAFNALVLFRDM-LVDVSGVKPT 216
+Q AK+ +L LF +M ++ VKP
Sbjct: 205 NGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKE----SLELFHEMQILSDDMVKPD 260
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+ VLS +QLG ++ G VHGY+ + E DV IGTALV+MY KCG + A I
Sbjct: 261 KITIASVLSACAQLGAIDHGKWVHGYLRRNGI--ECDVVIGTALVNMYGKCGDVQKAFEI 318
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F M EK+ WT M + A+HG G +A M GVKPN VTF L +AC H+GLV
Sbjct: 319 FEEMPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLV 378
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
E+G FD MK + +EP + HY+C+VD+L RA +E+ I +P+KPD +W +LL
Sbjct: 379 EQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMPMKPDVYVWGALLG 438
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
C +HG+V LGEKV L+ L+P +V +IYA A + + +R M
Sbjct: 439 GCQMHGNVELGEKVVHHLIDLEPH--------NHAFYVNWCDIYAKAGMFDAAKRIRNIM 490
Query: 457 KVKRVETE-PGSSILQ 471
K KR+E + PG S+++
Sbjct: 491 KEKRIEKKIPGCSMIE 506
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 163/461 (35%), Positives = 241/461 (52%), Gaps = 39/461 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ H Q +S + LI +Y T + K VF ++ + ++IR
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK----VFDEIPKRDIVSWTSMIRG 151
Query: 84 TPPQDSVLVFAYWVSKGLLT----------FDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+ L A + K LL D V + +C+R + L IH
Sbjct: 152 YDLNGNALD-AVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR---VPAKGLTESIHS 207
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKD--ISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
V KRGF V V TL+ YA + ++ +K+FDQ+ + ++N++++ Y +QS
Sbjct: 208 FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY-AQSGM 266
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP- 250
+ + A +FR LV V T+ VL S G L G C+H ++ M
Sbjct: 267 SNE----AFEVFR-RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH---DQVIRMGL 318
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E+DV +GT+++DMY KCG ++ A F RM+ KNV +WTAM G +HG +A+ L +
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M D GV+PN +TF S+ AAC HAGL EG F+ MK ++GVEP ++HY C+VDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY+ I + +KPD+I+W SLL+AC +H +V L E L +L +
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELD--------SSNC 490
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ LS+IYA A RW DVE VR MK + + PG S+L+
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLE 531
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A FCS+S L +H + N+ TTL + Y D+ S
Sbjct: 8 ALFCSVSRL-------LHTERHTERQNL---TTLFNRYVDKTDVFS-------------- 43
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WN++I A+ AL+ F M + PT ++ C + S L + G
Sbjct: 44 -WNSVIADLARSGDSAE-----ALLAFSSMRK--LSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
H + + ++D+F+ +AL+ MYS CG L++A +F + ++++++WT+M G
Sbjct: 96 KQTH--QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYD 153
Query: 297 IHGKGNEAIRLLDSM------RDCGVKPNAVTFTSLFAACCH--AGLVEEGLHLF 343
++G +A+ L + D + +++ S+ +AC A + E +H F
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 210/371 (56%), Gaps = 19/371 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-GFMFNVLVATTLIHFYASNKDISSG 163
D+ T V L +CA+ S+ LGR+IH V GF ++ + I Y+ D+
Sbjct: 214 DEGTLVSVLSACAQSGSIE---LGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIA 270
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+F+ + + +WN +I GY + + AL+LF++ML SG P D TM+ V
Sbjct: 271 SGLFEGLSCKDVVSWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGESPNDVTMLSV 323
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ M K
Sbjct: 324 LPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHK 383
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++ +W AM G A+HG+ N A L MR G++P+ +T L +AC H+GL++ G H+F
Sbjct: 384 SLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIF 443
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++ + + P ++HY C++DLLG AG +EA I +P++PD ++W SLL AC +HG+
Sbjct: 444 KSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGN 503
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ L E + L++++PE S +V LSNIYA+A RW DV +R+ + K ++
Sbjct: 504 LELAESFAQKLMEIEPE--------NSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKK 555
Query: 464 EPGSSILQTTT 474
PG S ++ +
Sbjct: 556 VPGCSSIEIDS 566
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 193/461 (41%), Gaps = 86/461 (18%)
Query: 28 HAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQ 87
HAQ++ L + + C VF PNL ++NT++R
Sbjct: 2 HAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASS 61
Query: 88 DSVL----VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF- 142
++ ++ VS G + + +T+ F L SCA+ T GRQIH V K G
Sbjct: 62 SDLVSPLEMYVRMVSXGHVP-NAYTFPFLLKSCAKS---KTFEEGRQIHAQVMKLGCELD 117
Query: 143 ------------------------------NVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+V+ T LI YAS D+ S +KVFD +
Sbjct: 118 RYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITE 177
Query: 173 RSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
R +WNAMI GY ++C + AL LF++M+ + V+P + T+V VLS +Q G
Sbjct: 178 RDVVSWNAMITGY------VENCGYEEALELFKEMM--RTNVRPDEGTLVSVLSACAQSG 229
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
+E G +H ++ + + I A + +YSKCG ++ A +F + K+V++W +
Sbjct: 230 SIELGREIHTLVDDHHGFG-SSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTL 288
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSK 349
G EA+ L M G PN VT S+ AC H G ++ G +H++ + + K
Sbjct: 289 IGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLK 348
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYN---------------FIMGIP----------- 383
GV + ++D+ + G +E A+ I G
Sbjct: 349 -GVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDL 407
Query: 384 --------IKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
I+PD I LLSAC+ G + LG + K + Q
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQ 448
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 245/490 (50%), Gaps = 65/490 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNTLI 81
+ K IHA L + L +L+ SP H +F P F +NTLI
Sbjct: 22 NFKLIHAHAFRTCLHQHAVV--LGKLFRFAAVSPFGDLSYAHNMFDQMPQPTTFFYNTLI 79
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R T P S L F + + + D+F++ F L S + T+ L IH V K
Sbjct: 80 RAHSHSTTPSFSSLFFNR-MRRNSIAPDEFSFTFLLKSRS-----FTMPLVHDIHGAVFK 133
Query: 138 RGFMFNVLVATTLIHFYAS-------------------NKDISS---------------- 162
GF ++ V LIH YA + DI S
Sbjct: 134 FGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDV 193
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+KVFD MP R +W M++ Y S++K+ + L LF++M ++GV P + T++
Sbjct: 194 ARKVFDGMPERDVVSWTIMLSAY-SKAKRPHE----TLDLFQEM--RLAGVWPDEVTVLS 246
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
V+S ++LG E G VH ++E+ + V + +L+DMY KCGCL+ A +F R +
Sbjct: 247 VISACAELGDAEMGRMVHKFVEENGFGWM--VALCNSLIDMYGKCGCLEEAWQVFDRTKR 304
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+++TW AM A HG +A RL + M GV P+ VT +L A H G V+EG+ L
Sbjct: 305 KSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRL 364
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F++M+ +GVEP I+HY +VD+LGR+G L+EAYN + +PI + ++W +LL AC +HG
Sbjct: 365 FESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWGALLGACRIHG 424
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
DV +GE+V K LL+L+P+ ++ L +IY +A R + +R+ M
Sbjct: 425 DVGMGERVIKKLLELKPD--------EGGYYILLRDIYVAAGRTAEANEMRQAMLASGAR 476
Query: 463 TEPGSSILQT 472
PG S ++
Sbjct: 477 KNPGCSWVEA 486
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 154/488 (31%), Positives = 250/488 (51%), Gaps = 54/488 (11%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH----FDPPN 73
++ P++ + L+T+ SP T + P STK H +H DP
Sbjct: 1 MSLPAYTATTPSSLVTHPNSSPNSKPN----QPTFPSRPHSTK-YHLTRSHTHSPIDPIV 55
Query: 74 LFLFNTLIRCTPPQ--DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+ + + C Q ++ F+ G+ + T++ L +C F L L G I
Sbjct: 56 SWTSSIALHCRNGQLPEAAAEFSRMQIAGVRP-NHITFLTLLSACTDF-PLEGLRFGGSI 113
Query: 132 HVHVTKRGF-MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H +V K G NV+V T L+ Y+ + +FD+M +R+S +WN MI+G C ++
Sbjct: 114 HAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDG-CMRNG 172
Query: 191 KA---------------------------KDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+ K C AL FR+M ++GV+P T++ V
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREM--QLAGVEPDYVTIISV 230
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L+ + LG L G ++ ++ K + ++++ I +L+DMYS+CGC+ A +F +M ++
Sbjct: 231 LAACANLGALGLGLWINRFVMKQDF--KDNIKISNSLIDMYSRCGCIRLARQVFEQMPKR 288
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++++W +M G A++G EA+ + MR G +P+ V+FT AC H+GLV+EGL F
Sbjct: 289 SLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFF 348
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D MK + P I+HY C+VDL RAG LE+A N I +P+KP+ ++ SLL+AC HGD
Sbjct: 349 DIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGD 408
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
V L E++ K L ++ P + ++V LSNIYA+ RW VRK+MK +
Sbjct: 409 VGLAERLMKYLCEVDP--------GSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHK 460
Query: 464 EPGSSILQ 471
+PG S ++
Sbjct: 461 KPGFSSIE 468
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 209/363 (57%), Gaps = 19/363 (5%)
Query: 110 VFALGSC-ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
VFA+ S F +L G+ +H + + G + VA L+ Y + + +FD
Sbjct: 186 VFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFD 245
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ + + +WN +I GY S+S A + A LF +ML+ + +P TM C+L ++
Sbjct: 246 HVTKKDTISWNTLIGGY-SRSNLANE----AFTLFNEMLLQL---RPNAVTMACILPAAA 297
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L LE G +H Y + Y+ +N F+ ALVDMY KCG L A +F + KN+++W
Sbjct: 298 SLSSLERGREMHAYAVRRGYLEDN--FVANALVDMYVKCGALLLARRLFDMLTNKNLISW 355
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T M G +HG+G +AI L + M+ G++P+A +F+++ AC H+GL +EG F+ M++
Sbjct: 356 TIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRN 415
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ +EP +KHY+C+VDLL G+L+EAY FI +PI+PD+ +W SLL C +H +V L E
Sbjct: 416 EHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAE 475
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KV +++ +L+PE T +V L+NIYA AERW V ++ ++ + + G S
Sbjct: 476 KVAEMVFELEPENTGY--------YVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCS 527
Query: 469 ILQ 471
++
Sbjct: 528 WIE 530
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 147/320 (45%), Gaps = 18/320 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G +H ++ K GF V LI FYA + I VFD+MP R +WN++I G S
Sbjct: 3 GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
K A+ LF M ++ G + TT++ V+ Q G VHGY +T
Sbjct: 63 NGLYDK-----AVELFVRMWLE--GQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTG 115
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E +G AL+DMYS C + IF M +KNV++WTAM T G ++ L
Sbjct: 116 LISETS--LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGL 173
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M G++P+ TS A ++ G + + G+E + + ++++
Sbjct: 174 FQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVH-GYAIRNGIEEVLPVANALMEMYV 232
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLL---SACNVHGDVALGEKVGKILLQLQPEVTFV 424
+ G++EEA FI K D I W +L+ S N+ + ++LLQL+P V
Sbjct: 233 KCGYMEEA-RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFT--LFNEMLLQLRPNA--V 287
Query: 425 DVACTSEDFVALSNIYASAE 444
+AC +LS++ E
Sbjct: 288 TMACILPAAASLSSLERGRE 307
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 140/334 (41%), Gaps = 15/334 (4%)
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
++G +H + + G + + L+ Y++ D S K+F M ++ +W AMI Y
Sbjct: 102 FIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSY 161
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
K LF++M + G++P + L + L+ G VHGY +
Sbjct: 162 TRAGHFDKVAG-----LFQEM--GLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIR 214
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
E + + AL++MY KCG ++ A IF + +K+ ++W + G + NEA
Sbjct: 215 NGI--EEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAF 272
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L + M ++PNAVT + A +E G + + +E + + +VD+
Sbjct: 273 TLFNEML-LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFV-ANALVDM 330
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
+ G L A + + + I W +++ +HG G + Q++ D
Sbjct: 331 YVKCGALLLARR-LFDMLTNKNLISWTIMIAGYGMHGR---GRDAIALFEQMKGSGIQPD 386
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
S A S+ E W ++R + +++
Sbjct: 387 AGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIE 420
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/489 (30%), Positives = 244/489 (49%), Gaps = 86/489 (17%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
++Q+H+ +IT+ L P + L C L LFN +IRC
Sbjct: 73 LQQVHSHIITSGLFYNPFHNTLT---C-----------------------LLLFNNVIRC 106
Query: 84 TP----PQDSVLVFAYWVSKGLL----TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
P +++ F Y + + D F++ F C + + G Q+H +
Sbjct: 107 YSFGPYPHEALHFFTYTQHCHIFLTYPSLDTFSFAFL---CHASANPNYTHFGTQLHALI 163
Query: 136 TKRGFMFNVLVATTLIHFYASNK-------------------------------DISSGK 164
K GF F V V T L+ Y+S+ ++
Sbjct: 164 FKVGFQFQVYVQTRLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELAC 223
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF+QMP RS +W +I+GY +++ K AL LFR M ++V G++PT+ T++ +
Sbjct: 224 SVFNQMPARSVVSWTLVIDGYTRRNQPIK-----ALTLFRKM-IEVDGIEPTEVTLLTIF 277
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM--RE 282
+ +G ++ VHGY+EK + DV I AL+D+Y+KCGC+ + F + +
Sbjct: 278 PAIANIGCIKICQSVHGYVEKRGF-NAFDVRITNALLDLYAKCGCIASVSRFFQEIPDQR 336
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+N+++WT+ +G A++G G EA+ +SM G++PN VTF + +AC H GLVEEG++
Sbjct: 337 RNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTFLGVLSACSHGGLVEEGINF 396
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK-PDAILWRSLLSACNVH 401
F M W + P IKHY C++D+LGRAG LEEA + +P + +A++WR+LL ACNVH
Sbjct: 397 FVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAEKIALQVPHEVANAVMWRTLLGACNVH 456
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+V +G++V +L+++ D+V +SNI R+ D E +R+ + +
Sbjct: 457 NNVEIGQRVTNKILEME--------RGHGGDYVLMSNILVGVGRFKDAEKLREMIDKRIA 508
Query: 462 ETEPGSSIL 470
PG S +
Sbjct: 509 FKLPGYSFV 517
>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Brachypodium distachyon]
Length = 656
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 214/388 (55%), Gaps = 55/388 (14%)
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------NKD 159
+CAR ++ G+Q+H + K GF ++ V TLIHFY S
Sbjct: 286 ACARHAAVLE---GQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSH 342
Query: 160 ISS----------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
I+S +++FD MP + + +W+ +++GY AL LF
Sbjct: 343 IASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDM-----ALQLF 397
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPENDVFIGTALVD 262
ML +GVKP T+ LS + G LE G +H Y+ K+ ++ +N + L+D
Sbjct: 398 CLMLG--AGVKPNHITLASTLSAVANSGTLEQGRWIHDYIISKSIHLTDNLI---AGLID 452
Query: 263 MYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY+KCG + +A+L+F+ ++EK ++ W AM +AIHG + ++ L ++ +KPN+
Sbjct: 453 MYAKCGSVADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIKPNS 512
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+T+ + ACCHAG+V EG H F++M+ ++G+ P IKHY C+VDLLGRAG+LEEA I
Sbjct: 513 ITYIGVLNACCHAGMVTEGKHHFESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAERLIK 572
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P+K D ++W S+L+A HG+VALGEK + L +L P VAL NIY
Sbjct: 573 TMPVKSDVVIWGSILAAARSHGNVALGEKAAEELAKLDPN--------HGASKVALCNIY 624
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSS 468
A A RW +V VRK+++ + +E GSS
Sbjct: 625 ADAGRWNNVSVVRKELRYENLERLSGSS 652
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 156/392 (39%), Gaps = 80/392 (20%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFD----DFTYVFALGSCARFCSLSTLWLGRQI 131
+ L R +D++ VF +G+L D + T + + AR + + L + +
Sbjct: 115 VLTALARAGHAEDAMAVF-----RGMLAQDVPPNEVTLAGVITALARDWAPAPLGM---V 166
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK- 190
H +RG V+VAT L+H YA+ + + VF+ MP +++ TWNAM+NGY
Sbjct: 167 HGVSVQRGLDGFVIVATNLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAI 226
Query: 191 -------------------------KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
DC AL + M+ +V DT L
Sbjct: 227 DMAAEMFERIPERDVVSWLVMIDGYIRADCISEALRTYVAMMAEV------DTRGNVALL 280
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPEN---DVFIGTALVDMYSKCGCLD----------- 271
V Q A + G T + + +F+ L+ Y C LD
Sbjct: 281 VDFQKACARHAAVLEGQQLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDK 340
Query: 272 ------NALL--------------IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
NA + +F M EK+ ++W+ + +G G + A++L M
Sbjct: 341 SHIASWNAFMAGIVRKNLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLM 400
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GVKPN +T S +A ++G +E+G + D + SK + + ++D+ + G
Sbjct: 401 LGAGVKPNHITLASTLSAVANSGTLEQGRWIHDYIISK-SIHLTDNLIAGLIDMYAKCGS 459
Query: 372 LEEAYNFIMGIPIKPDAIL-WRSLLSACNVHG 402
+ +A + K ++ W +++ + +HG
Sbjct: 460 VADAVLLFNHVKEKLSSLSPWNAMICSLAIHG 491
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 198/330 (60%), Gaps = 16/330 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+++ TT++ YA + + + +FD MP + A WNA+I+ Y Q K K+ AL L
Sbjct: 302 DIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAY-EQCGKPKE----ALEL 356
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F ++ + + KP + T+V LS +QLG ++ G +H Y++K + + + T+L+D
Sbjct: 357 FHELQLSKTA-KPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGM--KLNCHLTTSLID 413
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG L AL++F + K+V W+AM G+A+HG G +AI L M++ VKPNAVT
Sbjct: 414 MYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVT 473
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FT++ AC H GLVEEG F+ M+ +GV P +KHY+C+VD+LGRAG LEEA I +
Sbjct: 474 FTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 533
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+ P A +W +LL AC +H +V L E+ L++L+P +V LSNIYA
Sbjct: 534 PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEP--------GNHGAYVLLSNIYAK 585
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQT 472
A +W V +RK M+ ++ EPG S ++
Sbjct: 586 AGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 615
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 127/451 (28%), Positives = 211/451 (46%), Gaps = 64/451 (14%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNTLI 81
+KQIHAQ++ L P A +L SP S VF PNL+ +NTLI
Sbjct: 50 QLKQIHAQMLRTGLFFDPFSAS--RLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLI 107
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + P S+L+F + + D FT+ F + + + L L+ G+ H V K
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE---LEELFTGKAFHGMVIK 164
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
+V + +LIHFYA ++ G +VF +P R +WN+MI + C
Sbjct: 165 VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG-----CPE 219
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LF++M + VKP TMV VLS ++ EFG VH Y+E+ + +
Sbjct: 220 EALELFQEM--ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRI--GESLTLS 275
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM------ 311
A++DMY+KCG +++A +F +M EK++++WT M G A G+ + A + D+M
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIA 335
Query: 312 ---------RDCG-----------------VKPNAVTFTSLFAACCHAGLVEEG--LHLF 343
CG KP+ VT S +AC G ++ G +H++
Sbjct: 336 AWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVY 395
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
K G++ + + ++D+ + G L++A + K D +W ++++ +HG
Sbjct: 396 ---IKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK-DVFVWSAMIAGLAMHGH 451
Query: 404 ----VALGEKVGKILLQLQPE-VTFVDVACT 429
+AL K+ + +++P VTF ++ C
Sbjct: 452 GKDAIALFSKMQED--KVKPNAVTFTNILCA 480
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 227/419 (54%), Gaps = 29/419 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ-------DSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+F P F +N+LIR D+VLV+ + G + FT FAL +C+
Sbjct: 83 LFDQIPEPTAFCYNSLIRALSSAAGAAPAADTVLVYRRMLRAGSPLPNSFTLAFALKACS 142
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSSA 176
+L GRQ+H +RG + V T L++ YA ++++ + VFD M ++ A
Sbjct: 143 VVPALGE---GRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVFDGMVGDKNLA 199
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
W+AMI GY AL LFR+M + V P + TMV V+S ++ G L+ G
Sbjct: 200 AWSAMIGGYSRVGM-----VNEALGLFREM--QAADVNPDEVTMVSVISACAKAGALDLG 252
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
VH ++++ D+ + TAL+DMY+KCG ++ A +F M E++ W+AM G+A
Sbjct: 253 RWVHAFIDRKGITV--DLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLA 310
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
IHG A++L M + V+PN VTF + +AC H+GLV EG + M+ + G++P +
Sbjct: 311 IHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ-ELGIKPSM 369
Query: 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
++Y C+VDL R+ L+EAY+F+ G+ I P++++WR+LL A + + K LL+
Sbjct: 370 ENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQSASKKLLE 429
Query: 417 LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
L+P C E++V LSN+YAS +W V +RK+MK V G S ++ +
Sbjct: 430 LEP--------CNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGY 480
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/504 (32%), Positives = 258/504 (51%), Gaps = 64/504 (12%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKS--PPLYAQLIQLYCTKKASPQSTKIV 62
P + F L +KA + S +KQIH +I + S L+ L++ Y + +
Sbjct: 131 PDRQTFLYL-MKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFY----MELGNFGVA 185
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF P++ FN +I Q +++ ++ VS G+ D++T + L C
Sbjct: 186 EKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEP-DEYTVLSLLVCCGH 244
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMF--NVLVATTLIHFYASNK------------------ 158
LS + LG+ +H + +RG ++ N++++ L+ Y K
Sbjct: 245 ---LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMR 301
Query: 159 -------------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
D+ + + VFDQMP R +WN+++ GY SKK D LF +
Sbjct: 302 SWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGY---SKKGCD-QRTVRELFYE 357
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M + V VKP TMV ++S ++ G L G VHG + + + D F+ +AL+DMY
Sbjct: 358 MTI-VEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIR--LQLKGDAFLSSALIDMYC 414
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG ++ A ++F EK+V WT+M TG+A HG G +A++L M++ GV PN VT +
Sbjct: 415 KCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLA 474
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM-GIPI 384
+ AC H+GLVEEGLH+F++MK K+G +P +HY +VDLL RAG +EEA + + +P+
Sbjct: 475 VLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPM 534
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+P +W S+LSAC D+ E LL+L+PE +V LSNIYA+
Sbjct: 535 RPSQSMWGSILSACRGGEDIETAELALTELLKLEPE--------KEGGYVLLSNIYATVG 586
Query: 445 RWPDVESVRKQMKVKRVETEPGSS 468
RW + R+ M+ + V+ G S
Sbjct: 587 RWGYSDKTREAMENRGVKKTAGYS 610
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 199/449 (44%), Gaps = 61/449 (13%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
+L+ L+ + + KQ+ AQ++ L + P+ ++LI + + P++ + +F +
Sbjct: 37 SLVLLENCNSRNQFKQVLAQIMRFNLICDTFPM-SRLI--FFSAITYPENLDLAKLLFLN 93
Query: 69 FDP-PNLFLFNTLIRCTPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTL 125
F P PN+F++NT+I + F + S + ++ D T+++ + + + +
Sbjct: 94 FTPNPNVFVYNTMISAVSSSKNE-CFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEV--- 149
Query: 126 WLGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
+QIH H+ G + + +L+ FY + +KVF +MP +++N MI G
Sbjct: 150 ---KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVG 206
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y Q + AL L+ M+ D G++P + T++ +L L + G VHG++E
Sbjct: 207 YAKQG-----FSLEALKLYFKMVSD--GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIE 259
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ + +++ + AL+DMY KC A F M++K++ +W M G G A
Sbjct: 260 RRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAA 319
Query: 305 IRLLDSM--RDC-------------------------------GVKPNAVTFTSLFAACC 331
+ D M RD VKP+ VT SL +
Sbjct: 320 QAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAA 379
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ G + G + + ++ S ++D+ + G +E A+ + + D LW
Sbjct: 380 NNGELSHG-RWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAF-MVFKTATEKDVALW 437
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPE 420
S+++ HG+ G++ ++ ++Q E
Sbjct: 438 TSMITGLAFHGN---GQQALQLFGRMQEE 463
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 209/374 (55%), Gaps = 22/374 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ DD+T+ L C S++ + +H + K GF LV+ L+ YA D+
Sbjct: 362 MKIDDYTFPSVLNCCV-VGSINP----KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMD 416
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
VF++M + +W +++ GY + + +L +F DM V+GV P +
Sbjct: 417 CAYTVFEKMLEKDVISWTSLVTGYAQNNSHEE-----SLKIFCDM--RVTGVNPDQFIVA 469
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+LS ++L LLEFG VH K+ V+ +LV MY+KCGCLD+A IF M+
Sbjct: 470 SILSACAELTLLEFGKQVHLDFIKSGLRWSQSVY--NSLVAMYAKCGCLDDADAIFVSMQ 527
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
K+V+TWTA+ G A +GKG +++ D+M G +P+ +TF L AC HAGLV+EG
Sbjct: 528 VKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRK 587
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F M +G++P +HY+C++DL GR+G L+EA + + +KPDA +W+SLLSAC VH
Sbjct: 588 YFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVH 647
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
++ L E+ L +L+P + +V LSN+Y+++ +W DV +RK MK K +
Sbjct: 648 ENLELAERAATNLFELEP--------MNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGI 699
Query: 462 ETEPGSSILQTTTH 475
EPG S L+ +
Sbjct: 700 VKEPGCSWLEINSR 713
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 141/290 (48%), Gaps = 16/290 (5%)
Query: 111 FALGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD- 168
F LGS R CS L + G IH V K GF NV V T L+ YA K +S + +F
Sbjct: 163 FTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKG 222
Query: 169 -QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ ++ W AM+ GY + A+ FR M GV+ T +L+
Sbjct: 223 LEFDRKNHVLWTAMVTGYAQNGD-----GYKAVEFFRYM--HAQGVECNQYTFPTILTAC 275
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
S + FG VHG++ K+ + ++V++ +ALVDMY+KCG L NA + M + +V++
Sbjct: 276 SSVLARCFGEQVHGFIVKSGF--GSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVS 333
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W ++ G HG EA+RL +M +K + TF S+ C + + +H +
Sbjct: 334 WNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVH---GLI 390
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
K G E + + +VD+ + G ++ AY + ++ D I W SL++
Sbjct: 391 IKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 145/300 (48%), Gaps = 38/300 (12%)
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-- 190
+H T ++ L++ + + ++ +K+FD+MP + +WN MI+ Y + +
Sbjct: 54 IHTTTAASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLV 113
Query: 191 KAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
+A++ C A LFR M ++ G K + T+ VL V
Sbjct: 114 EARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLE--GWKASQFTLGSVLRV 171
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR--EKN 284
S LGL++ G +HG++ K + E +VF+ T LVDMY+KC C+ A +F + KN
Sbjct: 172 CSSLGLIQTGEMIHGFVVKNGF--EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKN 229
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH--AGLVEEGLHL 342
+ WTAM TG A +G G +A+ M GV+ N TF ++ AC A E +H
Sbjct: 230 HVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHG 289
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F +KS +G +++ S +VD+ + G L+ A N + + D + W SL+ HG
Sbjct: 290 FI-VKSGFGSNVYVQ--SALVDMYAKCGDLKNAKNMLETME-DDDVVSWNSLMVGFVRHG 345
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP+ D + ++ Y G L A +F K+ +TW+++ +G G EA L
Sbjct: 91 MPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF 150
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
SMR G K + T S+ C GL++ G + K G E ++ + +VD+ +
Sbjct: 151 RSMRLEGWKASQFTLGSVLRVCSSLGLIQTG-EMIHGFVVKNGFEGNVFVVTGLVDMYAK 209
Query: 369 AGHLEEAYNFIMGIPI-KPDAILWRSLLSACNVHGD 403
+ EA G+ + + +LW ++++ +GD
Sbjct: 210 CKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGD 245
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 165/520 (31%), Positives = 256/520 (49%), Gaps = 83/520 (15%)
Query: 18 ITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHF----VFTHFDPP 72
IT ++QIHA +I N S +L+ P +T V +F P
Sbjct: 11 ITNLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQP 70
Query: 73 NLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ F++NT IR + P +V ++A + + D+FT+ L +C + ++T G
Sbjct: 71 DTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKP-DNFTFPLVLKACTKLFWVNT---G 126
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHF-------------------------------YASN 157
+H V + GF NV+V TL+ F YA
Sbjct: 127 SVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQR 186
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA-----------KDC-AFNALV---- 201
D+S +K+FD+MP R +WN MI Y + KD ++NA+V
Sbjct: 187 GDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYV 246
Query: 202 ----------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
LF +M G P + TM+ +LS + LG + G VH + + +
Sbjct: 247 LHNLNQEALELFDEMCE--VGECPDEVTMLSLLSACADLG--DXGEKVHAKIME-LNKGK 301
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+G ALVDMY+KCG + + +F +R+K++++W ++ G+A HG E++ L M
Sbjct: 302 LSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREM 361
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ V P+ +TF + AAC H G V+EG F MK+K+ +EP+I+H C+VD+L RAG
Sbjct: 362 QRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGL 421
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L+EA++FI + I+P+AI+WRSLL AC VHGDV L ++ + LL+++ + S
Sbjct: 422 LKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVD--------QSG 473
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
D+V LSN+YAS W E+VRK M V GSS ++
Sbjct: 474 DYVLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 131/306 (42%), Gaps = 25/306 (8%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNV-----LVATT---LIHFYASNKDISSGKKVFDQMPM 172
+++ L RQIH + GF NV LV TT ++ A+ ++F Q+P
Sbjct: 10 TITNLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQ 69
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
+ WN I G A A + R VKP + T VL ++L
Sbjct: 70 PDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRS-------VKPDNFTFPLVLKACTKLFW 122
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
+ G+ VHG + + + ++V + L+ ++KCG L A IF + +V+ W+A+
Sbjct: 123 VNTGSVVHGRVFRLGF--GSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALI 180
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G A G + A +L D M K + V++ + A G +E LFD K V
Sbjct: 181 AGYAQRGDLSVARKLFDEM----PKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVV 236
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
+ ++ L + E ++ + + PD + SLLSAC GD GEKV
Sbjct: 237 SWNAMVGGYVLHNLNQEAL--ELFDEMCEVGECPDEVTMLSLLSACADLGDX--GEKVHA 292
Query: 413 ILLQLQ 418
+++L
Sbjct: 293 KIMELN 298
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 234/457 (51%), Gaps = 30/457 (6%)
Query: 25 KQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+QIH I N L L L+ +Y ++ ++ K+ F N ++ ++
Sbjct: 241 RQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKM----FDSSGDRNSITWSAMVTG 296
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ ++V +F+ S G+ ++T V L +C+ C L G+Q+H + K G
Sbjct: 297 YSQNGESLEAVKLFSRMFSAGIKP-SEYTIVGVLNACSDICYLEE---GKQLHSFLLKLG 352
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F ++ T L+ YA ++ +K FD + R A W ++I+GY S + A
Sbjct: 353 FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEE-----A 407
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L+L+R M +G+ P D TM VL S L LE G VHG+ K + E V IG+A
Sbjct: 408 LILYRRM--KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE--VPIGSA 463
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L MYSKCG L++ L+F R K+V++W AM +G++ +G+G+EA+ L + M G++P+
Sbjct: 464 LSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPD 523
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF ++ +AC H G VE G F+ M + G++P + HY+C+VDLL RAG L+EA FI
Sbjct: 524 DVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI 583
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
I LWR LLSAC HG LG G+ L+ L S +V LS I
Sbjct: 584 ESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSR--------ESSTYVQLSGI 635
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476
Y + R DVE V K M+ V E G S ++ Y
Sbjct: 636 YTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQY 672
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 9/277 (3%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
SL + +GRQ H V K ++ V T+L+ Y + G KVF MP R++ TW+
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWST 189
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
M++GY ++ + + A+ +F L + +D VLS + + G +H
Sbjct: 190 MVSGYATRGRVEE-----AIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIH 244
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
K + V + ALV MYSKC L+ A +F ++N +TW+AM TG + +G+
Sbjct: 245 CITIKNGLL--GFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 302
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EA++L M G+KP+ T + AC +EEG L + K G E H+ +
Sbjct: 303 SLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLL-KLGFERHLFATT 361
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+VD+ +AG L +A + + D LW SL+S
Sbjct: 362 ALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLISG 397
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 6/182 (3%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR +H + + G + A L++FYA ++ +F+ + + +WN++I GY
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ ++ + LFR+M + P T+ + S L G H + K
Sbjct: 93 NGGISS--SYTVMQLFREM--RAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMS 148
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
D+++ T+LV MY K G +++ L +F+ M E+N TW+ M +G A G+ EAI++
Sbjct: 149 SF--GDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKV 206
Query: 308 LD 309
+
Sbjct: 207 FN 208
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
+ P +T++ L+ SQ L G VHG + +T + LV+ Y+KCG L
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRT--GASTCIQHANVLVNFYAKCGKLAK 67
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEA---IRLLDSMRDCGVKPNAVTFTSLFAA 329
A IF+ + K+V++W ++ TG + +G + + ++L MR + PNA T +F A
Sbjct: 68 AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127
Query: 330 --CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+ V H S +G I + +V + +AG +E+ +P + +
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFG---DIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERN 183
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
W +++S G V KV + L+ + E + D T+
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTA 226
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 214/367 (58%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
DDF+ V L +C R L L G++IH V + G N VA +L+ Y G+
Sbjct: 516 DDFSIVSLLLACGR---LGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGR 572
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
F+ M ++S WNAM++GY SQ++ + AL LFR ML D G++P + + +L
Sbjct: 573 TYFETMGDKNSVCWNAMLSGY-SQNELPNE----ALSLFRQMLSD--GLEPDEIAIASIL 625
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
SQL L G VH + K M +N F+ +L+DMY+K G L ++ IF+R+ K
Sbjct: 626 GACSQLSALGLGKEVHCFALKNSLMEDN--FVACSLMDMYAKSGFLGHSQRIFNRLNGKE 683
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V +W M TG +HG+GN+A+ L + M+ +P+ TF + ACCHAGLV EGL+
Sbjct: 684 VASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLA 743
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M++ + +EP ++HY+C++D+LGRAG L EA NFI +P +PDA +W SLLS+ + D+
Sbjct: 744 QMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDL 803
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GEK + LL L+ A ++ ++ LSN+YA+A +W V VR++MK ++ +
Sbjct: 804 EMGEKFAEKLLALE--------ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKD 855
Query: 465 PGSSILQ 471
G S ++
Sbjct: 856 VGCSWIE 862
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 16/274 (5%)
Query: 63 HFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF NLF +N L+ R +++ F +S D+FT+ + +C
Sbjct: 163 RLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTG 222
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
C + LG+ +H K G + ++ V +I Y + ++FD+MP ++ +W
Sbjct: 223 KCDIH---LGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISW 279
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N++I G+ A FR +L G+ P TMV +L V S G ++ G
Sbjct: 280 NSLIRGFSENG-----FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMV 334
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+HG K + E + + AL+DMYSKCGCL A ++F ++ K+V++W +M +
Sbjct: 335 IHGMAVKLGLVHE--LMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSRE 392
Query: 299 GKGNEAIRLLDS--MRDCGVKPNAVTFTSLFAAC 330
G E LL M + ++ N VT +L AC
Sbjct: 393 GFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 145/320 (45%), Gaps = 30/320 (9%)
Query: 91 LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL 150
L+ W+ + L+ ++ T + L +C L +L R +H + + F + L+
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPACLEESELLSL---RALHGYSLRHSFQYKELINNAF 457
Query: 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK--KAKDCAFNALVLFRDMLV 208
I YA + + VF M +S ++WNA+I G+ KA D F L
Sbjct: 458 IAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRL------ 511
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
G+ P D ++V +L +LGLL++G +HG++ + E + F+ +L+ +Y C
Sbjct: 512 ---GILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGL--EMNSFVAVSLLSLYFHCS 566
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
F M +KN + W AM +G + + NEA+ L M G++P+ + S+
Sbjct: 567 KPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626
Query: 329 ACCH---AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA---GHLEEAYNFIMGI 382
AC GL +E +H F S +E + S ++D+ ++ GH + +N + G
Sbjct: 627 ACSQLSALGLGKE-VHCFALKNSL--MEDNFVACS-LMDMYAKSGFLGHSQRIFNRLNGK 682
Query: 383 PIKPDAILWRSLLSACNVHG 402
+ W +++ VHG
Sbjct: 683 EVAS----WNVMITGFGVHG 698
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 129/267 (48%), Gaps = 12/267 (4%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F + ++ T LI Y+ + VFD++ ++ WNA+++GY + D A +
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRN--ELYDEAIHT 196
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ L+ V+ +P + T C++ + + G VHG K + D+F+G A
Sbjct: 197 FL----ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIM--DLFVGNA 250
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVK 317
++ +Y KCG LD A+ +F +M E+N+++W ++ G + +G EA R S+ + G+
Sbjct: 251 MIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI 310
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ T +L C G V+ G+ + M K G+ + + ++D+ + G L EA
Sbjct: 311 PDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAI 369
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDV 404
I K + W S++ A + G V
Sbjct: 370 LFRKIENKS-VVSWNSMIGAYSREGFV 395
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 102/422 (24%), Positives = 170/422 (40%), Gaps = 55/422 (13%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDD------FTYVFALGSCAR 118
+F NL +N+LIR ++ + AY + LL D T V L C+
Sbjct: 267 LFDKMPEQNLISWNSLIR-GFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS- 324
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ +G IH K G + ++V LI Y+ +S +F ++ +S +W
Sbjct: 325 --GEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSW 382
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+MI Y + F L R M ++ ++ + T++ +L + L
Sbjct: 383 NSMIGAYSREG-----FVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRA 437
Query: 239 VHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HGY + +F E I A + Y+KCG L A +F M K+V +W A+ G A
Sbjct: 438 LHGYSLRHSFQYKE---LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD-----NMKSKW 350
+G +A+ M G+ P+ + SL AC GL++ G +H F M S
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554
Query: 351 GVEPHIKHYSCIVDLLGR------------------AGHLEEA--------YNFIMGIPI 384
V ++ C GR +G+ + + ++ +
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGL 614
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASA 443
+PD I S+L AC+ + LG++V L+ E F VAC+ D A S +
Sbjct: 615 EPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF--VACSLMDMYAKSGFLGHS 672
Query: 444 ER 445
+R
Sbjct: 673 QR 674
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 222/405 (54%), Gaps = 29/405 (7%)
Query: 72 PNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW- 126
P+ F +N +IR P+ ++ V+ + G+L D +T F +LS +
Sbjct: 227 PSSFYWNIIIRSYTRLEVPRIALFVYIAMLQAGILP-DCYTLPIV------FKALSLAYA 279
Query: 127 --LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
LG Q+H + GF F+ + LI Y+ D+ KVF+Q R +WNA+I G
Sbjct: 280 FDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAG 339
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
SQ +AK+ A N + R SG++P D T+V V S LG LE +H ++
Sbjct: 340 -LSQGGRAKE-AVNMFIKLRQ-----SGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVF 392
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ ++++ + +L+DMY KCG +D A+ +FS M +NV +WT++ G A+HG+ +A
Sbjct: 393 QVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQA 452
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ MR+ GV PN VTF + +AC H G++ EG H FD MK+ +G +P + HY C+VD
Sbjct: 453 LENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVD 512
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LL +AG LEEA I +P+K ++I+W L+ C HG+V +GE GK L +L+P V
Sbjct: 513 LLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGV 572
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+V LSNIYA+ W + + +R MK +++ PG S+
Sbjct: 573 --------YVVLSNIYATNGMWKEAQKMRDVMKQRQLAKVPGYSL 609
>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 700
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/396 (33%), Positives = 212/396 (53%), Gaps = 21/396 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ N L+ ++V V V +G++ +D TYV +G C + + L LG Q+H +
Sbjct: 198 VLNALVESGRLGEAVEVLGRMVDEGVV-WDSVTYVSVMGLCGQ---IRDLGLGLQVHAQL 253
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G F+V V + L+ + D+ S +KVFD + R+ W +++ Y + +
Sbjct: 254 LKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEE-- 311
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
L L M D G + T +L+ + + L G +H +EK +N V
Sbjct: 312 ---TLNLLSCM--DREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKL--GIKNRVI 364
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+G AL++MYSKCGC+D++ +F MR ++++TW AM G + HG G +A+ L M G
Sbjct: 365 VGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAG 424
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
PN VTF + +AC H LV EG + + + + VEP ++HY+C+V +L RAG LEEA
Sbjct: 425 ECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEA 484
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
NF+ +K D + WR LL+ACN+H + LG K+ + +LQ+ P D+ +
Sbjct: 485 ENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPR----DMGT----YTL 536
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSN+YA A W V +RK M+ + V+ EPG S ++
Sbjct: 537 LSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIE 572
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 112/465 (24%), Positives = 196/465 (42%), Gaps = 69/465 (14%)
Query: 25 KQIHAQL-ITNALKSPPLYAQ--------LIQLY--CTKKASPQSTKIVHFVFTHFDPPN 73
K IH QL I N + Y + LI LY C+K ++ ++F +
Sbjct: 32 KSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSK------LRLARYLFDEMSLRS 85
Query: 74 LFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ +N L + + V +F VS L +++ + L +CA ++ G
Sbjct: 86 VVSYNVLMGGYLHSGEHLEVVKLFKNMVSS-LYQPNEYVFTTVLSACAHS---GRVFEGM 141
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-----PMRSSATWNAMING 184
Q H + K G +F+ V ++L+H Y+ + +V + + +N+++N
Sbjct: 142 QCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNA 201
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
+ + VL R +VD GV T V V+ + Q+ L G VH +
Sbjct: 202 LVESGRLGEAVE----VLGR--MVD-EGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLL 254
Query: 245 K---TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
K TF DVF+G+ LVDM+ KCG + +A +F ++ +NV+ WT++ T +G+
Sbjct: 255 KGGLTF-----DVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEF 309
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
E + LL M G N TF L A + G L K G++ + +
Sbjct: 310 EETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVGNA 368
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP-- 419
++++ + G ++ +Y+ + + D I W +++ + HG LG++ LL Q
Sbjct: 369 LINMYSKCGCIDSSYDVFFDMRNR-DIITWNAMICGYSQHG---LGKQA---LLLFQDML 421
Query: 420 -------EVTFVDV-------ACTSEDFVALSNIYASAERWPDVE 450
VTFV V A +E F L+ + + P +E
Sbjct: 422 SAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLE 466
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 205/368 (55%), Gaps = 20/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT L +CA L +L G++IH +V + G + V T+L+ Y SS +
Sbjct: 450 DWFTISSLLLACAH---LKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSAR 506
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD+M ++ +WNAMI+GY + +L LFR L + G++ + +V V
Sbjct: 507 VLFDRMKDKNLVSWNAMISGYSQNG-----LPYESLALFRKSLSE--GIQSHEIAIVSVF 559
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
SQL L G HGY+ K + D F+G +++DMY+K GC+ + +F +++KN
Sbjct: 560 GACSQLSALRLGKEAHGYVLKA--LQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKN 617
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V +W A+ IHG G EAI L + M+ G P+ T+ + AC HAGLVEEGL F
Sbjct: 618 VASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFK 677
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M++ +EP ++HY+C++D+L RAG L++A + +P + D +W SLL +C G +
Sbjct: 678 EMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGAL 737
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+GEKV K LL+L+P+ +E++V LSN+YA +W V VR+ MK ++ +
Sbjct: 738 EIGEKVAKKLLELEPD--------KAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKD 789
Query: 465 PGSSILQT 472
G S ++
Sbjct: 790 AGCSWIEV 797
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 143/296 (48%), Gaps = 21/296 (7%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYW 96
L +LI++Y SP +++V F + + NL +N L+ R D V VF
Sbjct: 81 LNTRLIKMYAMC-GSPLDSRLV---FDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDL 136
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
VS D+FT+ + +C + LG IH V K G + +V V L+ Y
Sbjct: 137 VSDTDFQPDNFTFPSVIKACGGILDVR---LGEVIHGMVIKMGLVLDVFVGNALVGMYGK 193
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+ KVFD MP + +WN+MI + S++ ++D + L +ML + G+ P
Sbjct: 194 CGAVDEAMKVFDFMPETNLVSWNSMICAF-SENGFSRD----SFDLLMEMLGE-EGLLPD 247
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+V +L V + G ++ G +HG K E V + A+V MYSKCG L+ A +
Sbjct: 248 VVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE--VMVNNAMVYMYSKCGYLNEAQMS 305
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--VKPNAVTFTSLFAAC 330
F + KNV++W M + ++ G NEA LL M+ G +K N VT ++ AC
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC 361
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 14/280 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATT-LIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
GR++H V+ N V T LI YA + VFD M ++ WNA+++GY
Sbjct: 62 GRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYT 121
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ + +F D++ D +P + T V+ + + G +HG + K
Sbjct: 122 RNGLYG-----DVVKVFMDLVSDTD-FQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKM 175
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ DVF+G ALV MY KCG +D A+ +F M E N+++W +M + +G ++
Sbjct: 176 GLVL--DVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFD 233
Query: 307 LLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
LL M + G+ P+ VT ++ C G V+ G+ + + K G+ + + +V +
Sbjct: 234 LLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIH-GLAVKLGLSEEVMVNNAMVYM 292
Query: 366 LGRAGHLEEA-YNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+ G+L EA +F+ + + W +++SA ++ GDV
Sbjct: 293 YSKCGYLNEAQMSFVKN--NNKNVVSWNTMISAFSLEGDV 330
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 194/450 (43%), Gaps = 68/450 (15%)
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDSV-----LVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
F + N+ +NT+I + V L+ + + ++ T + L +C
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L +L +++H + + F +V ++ I YA ++S +KVF + ++ ++WNA
Sbjct: 366 QLRSL---KELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNA 421
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I G+ K AL L M SG +P T+ +L + L L++G +H
Sbjct: 422 LIGGHAQNGDPRK-----ALHLLFQM--TYSGQQPDWFTISSLLLACAHLKSLQYGKEIH 474
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+ + E D F+GT+L+ Y CG +A ++F RM++KN+++W AM +G + +G
Sbjct: 475 GYVLRNGL--ETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGL 532
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH---------------------------- 332
E++ L G++ + + S+F AC
Sbjct: 533 PYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCS 592
Query: 333 -------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGI 382
+G ++E +FD +K K ++ ++ I+ G GH +EA Y + +
Sbjct: 593 IIDMYAKSGCIKESRKVFDGLKDK-----NVASWNAIIVAHGIHGHGKEAIELYERMKKV 647
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PD + +L AC G L E+ K ++Q F + E + L ++ A
Sbjct: 648 GQMPDRFTYIGILMAC---GHAGLVEEGLKYFKEMQ---NFNLIEPKLEHYACLIDMLAR 701
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQT 472
A R D + +M + + SS+L++
Sbjct: 702 AGRLDDALRLVNEMP-EEADNRIWSSLLRS 730
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 130/294 (44%), Gaps = 23/294 (7%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSV------LVFAYWVS 98
L+ +Y A ++ K VF NL +N++I C ++ L+
Sbjct: 187 LVGMYGKCGAVDEAMK----VFDFMPETNLVSWNSMI-CAFSENGFSRDSFDLLMEMLGE 241
Query: 99 KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158
+GLL D T V L CA + +G IH K G V+V +++ Y+
Sbjct: 242 EGLLP-DVVTVVTILPVCAGEGEVD---IGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCG 297
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
++ + F + ++ +WN MI+ + + + AFN L ++M + +K +
Sbjct: 298 YLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNE--AFN---LLQEMQIQGEEMKANEV 352
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T++ VL L +HGY +F V + A + Y+KCG L++A +F
Sbjct: 353 TILNVLPACLDKLQLRSLKELHGY---SFRHCFQHVELSNAFILAYAKCGALNSAEKVFH 409
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
+ +K V +W A+ G A +G +A+ LL M G +P+ T +SL AC H
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/416 (34%), Positives = 221/416 (53%), Gaps = 25/416 (6%)
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+ +F P+L +N +I + SV +F + G + +G
Sbjct: 259 ETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG----EKVNSSSIVGL 314
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
F L L R IH TK G + N V+T L Y+ +I S + +FD+ +S
Sbjct: 315 IPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSL 374
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
A+WNAMI+GY K A+ LF++M V+P T+ +LS +QLG L
Sbjct: 375 ASWNAMISGYAQNGLTEK-----AISLFQEM--QKCEVRPNPVTVTSILSACAQLGALSL 427
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH + + + E+++F+ TAL+DMY+KCG + A +FS M EKN +TW AM +G
Sbjct: 428 GKWVHDLINRESF--ESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGY 485
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG G+EA+ L + M V P VTF S+ AC HAGLV EG +F +M G EP
Sbjct: 486 GLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPL 545
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+HY+C+VDLLGRAG+L++A +FI +P++P +W +LL AC +H D L L
Sbjct: 546 PEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLF 605
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L P+ +V LSNIY++ + +P+ SVR +K +++ PG ++++
Sbjct: 606 ELDPQ--------NVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIE 653
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 187/450 (41%), Gaps = 67/450 (14%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQSTKIVHFVF 66
R L + ++T + Q HAQ+I N L + + +L KA Q++ +F
Sbjct: 10 RNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQAS----LLF 65
Query: 67 THFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
+ P+LFL+N LIR P +V ++ + L D+FTY F + +
Sbjct: 66 STIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLG 125
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
L + GF ++ V + ++ Y +++ +KVFD M R + WN M+
Sbjct: 126 LLLHAHSIV------AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMV 179
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+G S C A+++F DM+ G+ TT+ VL ++L L G +
Sbjct: 180 SGLVKNS-----CFDEAILIFGDMV--KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCL 232
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
K + + ++ T L +YSKCG ++ A L+F ++ + +++++ AM +G + +
Sbjct: 233 AMKVGF--HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETE 290
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSL-----------FAACCHA------------------ 333
++RL + G K N+ + L C H
Sbjct: 291 SSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALT 350
Query: 334 ------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PI 384
+E LFD K + ++ ++ + G E+A + + +
Sbjct: 351 TVYSRLNEIESARLLFDESSEK-----SLASWNAMISGYAQNGLTEKAISLFQEMQKCEV 405
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKIL 414
+P+ + S+LSAC G ++LG+ V ++
Sbjct: 406 RPNPVTVTSILSACAQLGALSLGKWVHDLI 435
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/488 (32%), Positives = 249/488 (51%), Gaps = 46/488 (9%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS-TKIVHFVFTHFDPPNL 74
K TT +++IHA L+ L PL + +C SP + VFT PNL
Sbjct: 32 KHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCA--TSPGGDINYAYLVFTQIHSPNL 89
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +NT+IR + P ++ +F + + TY + A+ L G Q
Sbjct: 90 FSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQ---LGLAHYGAQ 146
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC---- 186
+H V K G F+ + T+I+ YA+ +S K F + WN+MI G
Sbjct: 147 LHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGE 206
Query: 187 -SQSKKAKD-------CAFNALV-------LFRDMLVDVSG------VKPTDTTMVCVLS 225
+S+K D ++N+++ R+ L D+ G +KP++ TMV +L+
Sbjct: 207 VDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREAL-DLFGQMQEERIKPSEFTMVSLLN 265
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
S++LG L+ G +H Y+ K + E +V + +++DMY KCG + A +F K +
Sbjct: 266 ASARLGALKQGEWIHDYIRKNNF--ELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGL 323
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+W M G+A++G NEAI+L + ++P+ VTF + AC ++GLV++ F
Sbjct: 324 SSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSL 383
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M + +EP IKHYSC+VD LGRAG LEEA I +P+ PDAI+W SLLSAC HG+V
Sbjct: 384 MSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVE 443
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
L ++ K ++ L S +V LSNIYA+++++ + R MK K++E EP
Sbjct: 444 LAKRAAKHIVDLD--------GNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEP 495
Query: 466 GSSILQTT 473
G S+++
Sbjct: 496 GCSLIEVN 503
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 251/501 (50%), Gaps = 63/501 (12%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQ-LITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
P F L L+A S + QIH +IT + L L+++Y + + +
Sbjct: 128 PNRSTFLFL-LQASKFLSQVMQIHCHAIITGSFYYGYLQNTLMKIYLEN----EKMGLAY 182
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF P+ FN +I + L F + + L D+FT + L C R
Sbjct: 183 QVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGR-- 240
Query: 121 SLSTLWLGRQIHVHVTKRGFM---------------------------FNVLVA------ 147
L LG+ +H + +RG + FNV+V
Sbjct: 241 -LGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISW 299
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T+I YA ++ F+ MP R +WN++I GY + DC LF +M+
Sbjct: 300 NTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKG----DCLM-VQRLFENMV 354
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ + P T++ ++S ++++G L G +HG++ + + D F+G+A +DMY KC
Sbjct: 355 AE--NIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRM--QMKIDAFLGSAFIDMYWKC 410
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + A ++F + EK+V WT M TG A HG G++A++L M++ V PN VTF ++
Sbjct: 411 GSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEY-VMPNQVTFVAVL 469
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+G V +GL +F++MK ++G+EP ++HY C+VDLLGR+G E + I +P+KP
Sbjct: 470 TACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFSEVKDVIEMMPMKPS 529
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W ++LSAC +G++ + E GK LL+L+PE +V LSNIYA++ RW
Sbjct: 530 RSIWGAVLSACRAYGNIEIAEIAGKELLKLEPE--------KEGGYVLLSNIYATSGRWK 581
Query: 448 DVESVRKQMKVKRVETEPGSS 468
+ +R+ M+ + V+ G S
Sbjct: 582 HSDKIREIMESRGVKKTAGCS 602
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 115/468 (24%), Positives = 202/468 (43%), Gaps = 67/468 (14%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L+ L+ +T H KQI AQ++ L + L+ + P++ + +F H P
Sbjct: 35 LILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILF-SAITHPENLDMAVLLFRHHTP 93
Query: 72 -PNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
PNL+++NT+I + + F + + + T++F L ++F S
Sbjct: 94 HPNLYIYNTMISALSLSLNQSFAFYNSLLSSCIYPNRSTFLFLL-QASKFLSQVM----- 147
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
QIH H G + + TL+ Y N+ + +VF QM + ++N MI GY +
Sbjct: 148 QIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGY---A 204
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
KK + AL +M+ G+KP + TM+ +L +LG + G VH ++E+ +
Sbjct: 205 KKGHN--IEALKFLHEMV--GLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLI 260
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG---------- 299
+++ + AL+DMY KC L A IF+ + K+ ++W M G A G
Sbjct: 261 KSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFE 320
Query: 300 -------------------KGNEAI--RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
KG+ + RL ++M + P+ VT +L +A G +
Sbjct: 321 DMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHH 380
Query: 339 GLHLFDNMKSKWGVEPHIK----HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
G + W V +K S +D+ + G ++ A + K D +W ++
Sbjct: 381 GRWIHG-----WVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEK-DVTVWTTM 434
Query: 395 LSACNVHGDVALGEKVGKILLQLQP-----EVTFVDV--ACTSEDFVA 435
++ HG G K ++ ++Q +VTFV V AC+ FV+
Sbjct: 435 ITGFAFHG---YGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVS 479
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 210/372 (56%), Gaps = 28/372 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L SC F S LGRQIH H+ KR + ++ V ++L+ YA I +
Sbjct: 110 NEFTFATVLSSCTGF---SGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEAR 166
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF+ +P R + A+I+GY + AL LF + G+ T +L
Sbjct: 167 GVFECLPERDVVSCTAIISGYAQLGLDEE-----ALELF--CRLQREGMSSNYVTYASLL 219
Query: 225 SVSSQLGLLEFGACVHGYM---EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+ S L L+ G VH ++ E FY V + +L+DMYSKCG L+ A IF+ M
Sbjct: 220 TALSGLAALDHGKQVHSHVLRCELPFY-----VVLQNSLIDMYSKCGNLNYARKIFNNMP 274
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGL 340
+ V++W AM G + HGKG E ++L MR+ VKP++VTF ++ + C H GL ++GL
Sbjct: 275 VRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGL 334
Query: 341 HLFDNMKSKWG-VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+FD M + +E I+HY C++DLLGRAG +EEA+ I +P +P A +W SLL AC
Sbjct: 335 EMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACR 394
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
VH + +GE VG LL+++PE + ++V LSN+YASA RW DV +VR+ M K
Sbjct: 395 VHSNTNIGEFVGCRLLEIEPE--------NAGNYVILSNLYASAGRWEDVRNVRELMMEK 446
Query: 460 RVETEPGSSILQ 471
V EPG S ++
Sbjct: 447 AVIKEPGRSWIE 458
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 156/303 (51%), Gaps = 15/303 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H H+ K ++ V ++T LI Y + + + VFD+M R+ +W AMI+GY
Sbjct: 29 GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGY-- 86
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A AL LF ML S +P + T VLS + E G +H ++ K
Sbjct: 87 ---SQRGFASEALHLFVQML--RSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRN 141
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y EN +F+G++L+DMY+K G + A +F + E++V++ TA+ +G A G EA+ L
Sbjct: 142 Y--ENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALEL 199
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
++ G+ N VT+ SL A ++ G + ++ + + ++ + ++D+
Sbjct: 200 FCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHV-LRCELPFYVVLQNSLIDMYS 258
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ---LQPE-VTF 423
+ G+L A +P++ I W ++L + HG K+ K++ + ++P+ VTF
Sbjct: 259 KCGNLNYARKIFNNMPVRT-VISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTF 317
Query: 424 VDV 426
+ V
Sbjct: 318 LAV 320
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 7/206 (3%)
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH +M KT Y+P V++ T L+ +Y+KC CL A +F MRE+NV++WTAM +G
Sbjct: 29 GQRVHAHMIKTCYLP--PVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGY 86
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+ G +EA+ L M +PN TF ++ ++C E G + ++ K E H
Sbjct: 87 SQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHI-FKRNYENH 145
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I S ++D+ +AG + EA +P + D + +++S + + L E+ ++
Sbjct: 146 IFVGSSLLDMYAKAGRIHEARGVFECLP-ERDVVSCTAIISG---YAQLGLDEEALELFC 201
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYA 441
+LQ E + + ALS + A
Sbjct: 202 RLQREGMSSNYVTYASLLTALSGLAA 227
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 201/367 (54%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+FTY L +CA + S G ++H + K G + V + L+ Y+ + +
Sbjct: 459 DEFTYGSVLKACAGQRAFSN---GMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAE 515
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ ++ ++ +WNA+I+G+ Q K F F ML GV+P + T VL
Sbjct: 516 KIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRF-----FSHMLE--MGVEPDNFTYATVL 568
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L + G +H M K + +DV+I + LVDMYSKCG + ++LL+F + +++
Sbjct: 569 DTCANLATVGLGKQIHAQMIKLELL--SDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRD 626
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW AM G A HG G EA+ L + M +KPN TF S+ AC H G ++GL F
Sbjct: 627 SVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQ 686
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M S + +EP ++HYSC+VD+LGR+G +EEA I +P + DAI+WR+LLS C + G+V
Sbjct: 687 KMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNV 746
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ EK LL+L PE S + LSNIYA A W V +R+ M+ ++ E
Sbjct: 747 EVAEKAASSLLKLDPE--------DSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKE 798
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 799 PGCSWIE 805
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 149/313 (47%), Gaps = 15/313 (4%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
Q S+ VF G++ FD T +L C+ L LG QIH + GF ++V+
Sbjct: 139 QKSIAVFLKMRDLGVM-FDHTTLAVSLKICSL---LEDQVLGIQIHGIAVQMGFDYDVVT 194
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
+ L+ YA + VF ++P ++ +W+A I G C Q+ D L LF++M
Sbjct: 195 GSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAG-CVQN----DQLLRGLKLFKEM 249
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
G+ + +T V + L G +H + KT + +DV +GTA +DMY+K
Sbjct: 250 --QRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDF--GSDVIVGTATLDMYAK 305
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
C + +A +FS + + N+ ++ AM G A + +G +A +L ++ + V+ +
Sbjct: 306 CDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGA 365
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+A EGL L + K + +I + I+D+ G+ G L EA + I+
Sbjct: 366 LSAAAVIKGHSEGLQLH-GLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIR- 423
Query: 387 DAILWRSLLSACN 399
D + W ++++AC
Sbjct: 424 DPVSWNAIITACE 436
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/408 (21%), Positives = 168/408 (41%), Gaps = 79/408 (19%)
Query: 76 LFNTLIRCTPPQDSVLVFAY-----WVS---------------KGLLTFDDF-------- 107
L + +C +DS+ VF+ W+S +GL F +
Sbjct: 198 LVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVS 257
Query: 108 --TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
TY SCA LS LG Q+H H K F +V+V T + YA ++S K
Sbjct: 258 QSTYASVFRSCA---GLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYK 314
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+F +P + ++NAMI GY + F A LF + + + + ++ LS
Sbjct: 315 LFSLLPDHNLQSYNAMIIGYARNEQ-----GFQAFKLF--LQLQKNSFSFDEVSLSGALS 367
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
++ + G +HG K+ +++ + A++DMY KCG L A +F M ++
Sbjct: 368 AAAVIKGHSEGLQLHGLAIKSNL--SSNICVANAILDMYGKCGALVEASGLFDEMEIRDP 425
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++W A+ T + + + +M ++P+ T+ S+ AC G+ +
Sbjct: 426 VSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGR 485
Query: 346 -MKSKWGVEPHIKHYSCIVDLLGRAGHLEEA----------------------------- 375
+KS G++ + S +VD+ + G +EEA
Sbjct: 486 IIKSGMGLKMFVG--SALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSE 543
Query: 376 -----YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
++ ++ + ++PD + ++L C V LG+++ +++L+
Sbjct: 544 DSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLE 591
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 135/304 (44%), Gaps = 37/304 (12%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
F+++F S R L G++ H H+ GF V V LI Y + KV
Sbjct: 27 FSHIFQECSNRR-----ALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKV 81
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAK--DCAFNALVLFRDMLV------------DVS- 211
F++MP R +WN M+ G C+ + + + FN++ D++ D+
Sbjct: 82 FEEMPQRDIVSWNTMVFG-CAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQK 140
Query: 212 -----------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
GV TT+ L + S L G +HG + + + DV G+AL
Sbjct: 141 SIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGF--DYDVVTGSAL 198
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY+KC L+++L +FS + +KN ++W+A G + + ++L M+ G+ +
Sbjct: 199 VDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQ 258
Query: 321 VTFTSLFAACCHAGLVEEGLHLF-DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
T+ S+F +C G L +K+ +G + + + +D+ + ++ +AY
Sbjct: 259 STYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVG--TATLDMYAKCDNMSDAYKLF 316
Query: 380 MGIP 383
+P
Sbjct: 317 SLLP 320
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 118/283 (41%), Gaps = 53/283 (18%)
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L+ G H +M + + P VF+ L+ MY KC L+ A +F M ++++++W M
Sbjct: 40 LKPGKEAHAHMILSGFTPT--VFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMV 97
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---- 348
G A G+ A + +SM G + V++ SL + G +++ + +F M+
Sbjct: 98 FGCAGAGRMELAQAVFNSMPHHG---DVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVM 154
Query: 349 ------------------------------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ G + + S +VD+ + LE++ +
Sbjct: 155 FDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDV 214
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
+P K + I W + ++ C + + G K+ K ++Q + V + + F + +
Sbjct: 215 FSELPDK-NWISWSAAIAGCVQNDQLLRGLKLFK---EMQRKGIGVSQSTYASVFRSCAG 270
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDGF 481
+ AS + Q+ ++T+ GS ++ T TLD +
Sbjct: 271 LSAS--------RLGTQLHCHALKTDFGSDVIVGTA--TLDMY 303
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 219/400 (54%), Gaps = 26/400 (6%)
Query: 77 FNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+NT+I R P ++ F V K +T DD T + AL + A+ + +GR H
Sbjct: 164 WNTIISGYLRGGMPNKALQAFGQMV-KEQVTLDDVTLLNALVASAK---AGKVKVGRLCH 219
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
V G N + ++LI YA + +KVF M R+ W +MI+GY +Q K
Sbjct: 220 SLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGY-TQLGKF 278
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
K+ A+ LFRDM ++G+K D T+ V+S +Q+G L+ G VH Y + +
Sbjct: 279 KE----AVNLFRDM--QITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCD--VHGLGK 330
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
++ + +L+DMYSKCG ++ A IF + +++V +WTAM G ++G +EA+ L M
Sbjct: 331 ELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQME 390
Query: 313 DCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
G V PN VTF + +C H GLVE+G H F M + + P I+HY C+VDLLGRA
Sbjct: 391 GEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKL 450
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L EA FI +PI PD ++WRSLL AC G+V L E V + +L+L+P+ C
Sbjct: 451 LTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPK------KCAGH 504
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSN+YA+ RW DV +R M R+ +PG S ++
Sbjct: 505 --VLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIE 542
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 169/338 (50%), Gaps = 30/338 (8%)
Query: 100 GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
G +T D+++ A + +R S+S +G Q+H K G + + V +LI+ Y+S
Sbjct: 87 GYVTLDNYSLNIAFSATSRLPSVS---VGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSY 143
Query: 160 ISSGKKVFDQMPMRS--SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
++ ++V D P + + +WN +I+GY K AL F M+ + V D
Sbjct: 144 PATARQVLDSAPQGACDTVSWNTIISGYLRGGMPNK-----ALQAFGQMVKE--QVTLDD 196
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T++ L S++ G ++ G H + + ++G++L+ MY+KCG +++A +F
Sbjct: 197 VTLLNALVASAKAGKVKVGRLCHSLV--VVNGAGINCYMGSSLISMYAKCGLVEDARKVF 254
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M E+NV+ WT+M +G GK EA+ L M+ G+K + T ++ ++C G ++
Sbjct: 255 HGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALD 314
Query: 338 EG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
G +H + ++ G E +K+ ++D+ + G + +A+ G+ K D W +++
Sbjct: 315 LGRYVHAYCDVHG-LGKELSVKN--SLIDMYSKCGDINKAHEIFCGLT-KRDVFSWTAMI 370
Query: 396 SACNVHG------DV-ALGEKVGKILLQLQPEVTFVDV 426
V+G D+ A E GK+ + EVTF+ V
Sbjct: 371 MGFTVNGLCSEALDLFAQMEGEGKV---MPNEVTFLGV 405
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 217/397 (54%), Gaps = 53/397 (13%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-------- 156
++ V + +C R ++ W Q+H V KRGF + TT+I+FYA+
Sbjct: 316 NEVMIVNLVSACGRGTAIVDGW---QLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLAC 372
Query: 157 -----------------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
N + K FD+M +R +W+ MI+GY +QS+ K
Sbjct: 373 LQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGY-AQSEHPK 431
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF ML G+KP + TMV V S + LG L+ G H YM ++ +P ND
Sbjct: 432 ----MALELFHKMLA--GGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYM-RSESIPFND 484
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ AL+DMY+KCG +++AL F+++R++ +V W A+ G+A HG + + + M
Sbjct: 485 N-LRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDM 543
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ +KPN +TF + +ACCHAGLVE G +F MKS + VEP IKHY C++D+LGRAG
Sbjct: 544 QRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGL 603
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
LEEA I +P++ D ++W +LL+AC HG+V +GE+ + L +L P
Sbjct: 604 LEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGERAAENLARLAPS--------HGG 655
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
V LSNIYA+A +W +V VR M+ + ++ EPG S
Sbjct: 656 GKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREPGYS 692
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 141/355 (39%), Gaps = 74/355 (20%)
Query: 45 LIQLYCTKKASPQST--KIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLL 102
I L K SP S + H + F PN PQ + +F +
Sbjct: 2 FISLSLRLKFSPSSLPFHLRHISTSTFTKPN------------PQHFIHIFTNARNHQNH 49
Query: 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162
+ V AL SC+ SLS + GRQIH + K G FN + +LI+ YA DI +
Sbjct: 50 HDSELALVSALKSCS---SLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKN 106
Query: 163 GKKVFDQMPMRSSATWNAMINGYC-----SQSKKAKDCAFN------------------- 198
+ +FD S + N M++GY ++K D N
Sbjct: 107 AQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFF 166
Query: 199 --ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY-------- 248
AL +F+DM GV P D T+V V+S S LG + VHG + K F
Sbjct: 167 REALEVFKDM--RSCGVVPNDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVST 224
Query: 249 ---------------------MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
MPE ++ +++ Y+K G +D A +F + +K+V++
Sbjct: 225 NLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVIS 284
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
W M G G+ EA+ + +M G PN V +L +AC + +G L
Sbjct: 285 WGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGRGTAIVDGWQL 339
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/401 (23%), Positives = 175/401 (43%), Gaps = 70/401 (17%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++++ VF S G++ +D T V + +C+ L + R +H V K + V+V
Sbjct: 167 REALEVFKDMRSCGVVP-NDLTLVNVISACSH---LGEVLNCRMVHGLVVKMFVVGLVIV 222
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-----SQSKKAKDCAFN--- 198
+T L+H Y + +++FD+MP R+ TWN M+NGY ++++ D +
Sbjct: 223 STNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDV 282
Query: 199 ------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
AL ++R ML +G P + +V ++S + + G +H
Sbjct: 283 ISWGTMIDGYIQKGRLREALEIYRAMLQ--TGHGPNEVMIVNLVSACGRGTAIVDGWQLH 340
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCG-----CL------------------------- 270
G + K + N FI T ++ Y+ CG CL
Sbjct: 341 GTVVKRGFDCYN--FIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGM 398
Query: 271 -DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
D+AL F +M ++V +W+ M +G A A+ L M G+KPN VT S+F+A
Sbjct: 399 MDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSA 458
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
G ++EG + M+S+ + + + ++D+ + G + A F I + ++
Sbjct: 459 IATLGTLQEGKLAHEYMRSE-SIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSV 517
Query: 390 L-WRSLLSACNVHGDVALGEKVGKIL--LQLQPE-VTFVDV 426
W +++ HG ++ +V + ++P +TF+ V
Sbjct: 518 SPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGV 558
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 215/406 (52%), Gaps = 23/406 (5%)
Query: 72 PNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P FL+N + IR P DSV V+ V +L D +T + + + + L
Sbjct: 79 PIAFLWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLP-DRYTLPIVIKAAVQ---IHDFPL 134
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q+H + GF+ + + I Y ++ + + VFD+ P R +WNA+I G
Sbjct: 135 GKQLHSVAVRLGFVGDEFCESGFITLYCKAGELENARNVFDENPERKLGSWNAIIGGLNH 194
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A A+ +F +M SG +P D TMV V S LG L +H + +
Sbjct: 195 AGR-----ANEAVEMFMEM--RRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAK 247
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
++DV + +L+DMY KCG +D A+ +F M ++NV++W++M TG A +G EA+
Sbjct: 248 TEEKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALEC 307
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
MR+ GV+PN +TF + +AC H GLVEEG F MKS++ +EP + HY CIVDLL
Sbjct: 308 FRQMREFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLS 367
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
R G L+EA + +P+KP+ ++W L+ C GDV + E V +++L+P V
Sbjct: 368 RDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGV--- 424
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+V L+N+YA W DVE VRK MK K+V P S TT
Sbjct: 425 -----YVVLANVYALKGMWKDVERVRKVMKEKKVAKIPAYSYASTT 465
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 213/392 (54%), Gaps = 22/392 (5%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IR P ++ F + ++K + D+ T + L +CAR ++ +G H V GF
Sbjct: 172 IRGGMPNKALQSF-HQMAKEQVRLDEVTLLNVLVACARTGAMK---VGSLCHALVVLNGF 227
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
N + ++L+ YA + ++VF++MP R+ W +MI G C+QS + K+ A+
Sbjct: 228 EINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG-CTQSGRFKE----AV 282
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFRDM ++GVK D T+ V+S Q+G L+ G +H Y + E + + +L
Sbjct: 283 DLFRDM--QIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE--LSVKNSL 338
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPN 319
+DMYSKCG ++ A IF + +++V TWT M G A++G EA+ L M + V PN
Sbjct: 339 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 398
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
V F + AC H GLVE+G H F M + + P I+HY C+VDLLGRA L EA FI
Sbjct: 399 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFI 458
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P+ PD ++WRSLL AC G V L E + + QL+P+ C V LSN+
Sbjct: 459 KDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPK------RCGGH--VLLSNV 510
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YA+ RW DV +VR M R +PG S ++
Sbjct: 511 YATTLRWVDVNNVRTGMGNSRTSKKPGCSFIE 542
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+T D+++ A+ + AR SL +G Q H K + V LI+ Y+S +
Sbjct: 89 MTLDNYSLNIAISAAARVPSLD---VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPA 145
Query: 162 SGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
S + V D P +S +WN +I GY K AL F M + V+ + T
Sbjct: 146 SARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNK-----ALQSFHQMAKE--QVRLDEVT 198
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
++ VL ++ G ++ G+ H + + E + +IG++LV MY+KCG ++ A +F+R
Sbjct: 199 LLNVLVACARTGAMKVGSLCHALVVLNGF--EINCYIGSSLVSMYAKCGMVEEARRVFNR 256
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E+NV+ WT+M G G+ EA+ L M+ GVK + T ++ ++C G ++ G
Sbjct: 257 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG 316
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+L G+ + + ++D+ + G + +AY G+ K D W ++
Sbjct: 317 RYLHAYCDGH-GLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLT-KRDVFTWTVMIMGFA 374
Query: 400 VHG 402
++G
Sbjct: 375 MNG 377
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/376 (36%), Positives = 207/376 (55%), Gaps = 55/376 (14%)
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------NKDI 160
CAR ++ G+Q+H + K GF + V TLIHFY S I
Sbjct: 287 CARHAAVLE---GQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSHI 343
Query: 161 SS----------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
+S +++FD MP R + +W+ +++GY K AL LF
Sbjct: 344 ASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNK-----ALQLFY 398
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPENDVFIGTALVDM 263
ML +GV+P D T+ LS + G+LE G +H Y+ + + +N + L+DM
Sbjct: 399 LMLG--AGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDN---LSAGLIDM 453
Query: 264 YSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
Y+KCG + +A+ +FS ++ K +V W A+ +AIHG + ++ L ++ +KPN+V
Sbjct: 454 YAKCGSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSV 513
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
T+ + ACCHAGLV EG H F++M ++G++P IKHY C+VDLLGRAGHLEEA N I
Sbjct: 514 TYIGVLNACCHAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQM 573
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P++ D ++W S+L+A HG+VALGEK + L ++ P VALSNI+A
Sbjct: 574 MPMRSDVVIWGSILAAARTHGNVALGEKAAEELAKIDPN--------HGASKVALSNIFA 625
Query: 442 SAERWPDVESVRKQMK 457
A RW +V VRK+++
Sbjct: 626 EAARWNNVSLVRKELQ 641
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 159/392 (40%), Gaps = 80/392 (20%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ----- 130
+ L R +D+V VF +G+L D L L+ L L R
Sbjct: 115 VLTALARAGHAEDAVAVF-----RGMLAQDVPPNEVTLAGV-----LTALALERPPVPVG 164
Query: 131 -IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ- 188
H +RG ++VAT L+H YA+ + +++F+QMP +++ TWNAM+NGY
Sbjct: 165 VAHGVTVRRGLNGFLIVATNLVHAYAAASQVCFAREIFEQMPDKNTVTWNAMLNGYLKAG 224
Query: 189 -------------SKKA------------KDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+ A DC AL + M+ +V + +V +
Sbjct: 225 MLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMAEVD-TRGNAALLVDL 283
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+ V ++ + G +H + K + + F+ L+ Y C LD A + F +
Sbjct: 284 IKVCARHAAVLEGQQLHTVILKDGF--DAHPFVQATLIHFYGSCDLLDIARMQFKLSDKS 341
Query: 284 NVLTWTAMATGMAIH--------------------------------GKGNEAIRLLDSM 311
++ +W A+ +G+ +H G N+A++L M
Sbjct: 342 HIASWNALMSGL-LHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLM 400
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV+PN VT S +A +G++E+G + D + S ++ + ++D+ + G
Sbjct: 401 LGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISN-SIQLTDNLSAGLIDMYAKCGS 459
Query: 372 LEEAYNFIMGIPIKPDAIL-WRSLLSACNVHG 402
+ +A + K ++ W +++ + +HG
Sbjct: 460 VADAIQLFSHVKHKLSSVSPWNAIICSLAIHG 491
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/483 (31%), Positives = 239/483 (49%), Gaps = 52/483 (10%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ IKQ HA LIT A + P+ A K + S H +F P+LF++NT+I
Sbjct: 193 NQIKQTHANLITTAQITLPVIANKF----LKNVALASLTYAHKLFDQIPQPDLFIYNTMI 248
Query: 82 RC---TPPQ--DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
+ +P DS+ VF + + +++VFA G+C + G Q+ H
Sbjct: 249 KSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVRE---GEQVFTHAV 305
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK--AKD 194
K G NV V LI + + + VFD R +WN MI Y AK+
Sbjct: 306 KVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKE 365
Query: 195 ------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
C AL F ML S VKP + TMV L+ S L
Sbjct: 366 LFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQ--SEVKPNEYTMVSALAACSNL 423
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWT 289
L+ G +H Y+ + + ND + + L+DMY+KCG +D+A +F + ++ V W
Sbjct: 424 VALDQGKWIHVYIRRD-NIKMNDRLLAS-LIDMYAKCGEIDSASSVFHEHKVKRKVWPWN 481
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AM G A+HGK EAI + + M+ V PN VTF +L AC H +V+EG F+ M S
Sbjct: 482 AMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASD 541
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+ P I+HY C+VDLL R+GHL+++ I+ +P+ PD +W +LL+AC ++ D+ G +
Sbjct: 542 YGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYR 601
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSS 468
+G+I+ ++ P + C V L NIY+++ RW + VR++ ++ + PG S
Sbjct: 602 IGRIIKEIDPN----HIGCN----VLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFS 653
Query: 469 ILQ 471
++
Sbjct: 654 SIE 656
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 203/332 (61%), Gaps = 24/332 (7%)
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
V+ T +I YA+N D+ S + +F+ MP+++ +WNAMI+GY + + AL +F
Sbjct: 234 VVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQ-----ALCVF 288
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT---FYMPENDVFIGTAL 260
ML++ +P TT++ +LS + LG LE G ++ Y++K +P +G AL
Sbjct: 289 HHMLIN-GECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIP-----LGNAL 342
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DM++KCG ++NA +F M ++ ++TWT M +G+A++GK EAI L D M G KP+
Sbjct: 343 IDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDD 402
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
V F ++ +AC H GLVEEG +FD M ++G++P I+HY C+VDLLGRAG LEEA F
Sbjct: 403 VIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTA 462
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL-SNI 439
+ +KP+A++W +LL C +HG+ L + V + ++ +P ++ ++ L SN+
Sbjct: 463 RMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEP---------SNPSYLTLVSNL 513
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
AS RW DV S R M+ +R+E PG S +Q
Sbjct: 514 SASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQ 545
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 68/369 (18%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-NKDISSG 163
+ FT+ F L C F + L GR IH + K GF +V V +L+ FYA+ ++++ S
Sbjct: 73 NSFTFTFLL-KC--FETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSA 129
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+VF++MP R +WN+MI+ Y ++ + + + D + + + V T ++VC
Sbjct: 130 YRVFEEMPERDVISWNSMISAYMTRGE------IQSAIGLLDKMPERNIV--TWNSVVCG 181
Query: 224 LSVSSQLGL-------------LEFGACVHGYM--------EKTFY-MPENDVFIGTALV 261
LS + + L + + + + GY+ + FY MPE V TA++
Sbjct: 182 LSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMI 241
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNA 320
Y+ G L +A IF+ M KNV++W AM +G + + ++A+ + M G +P+
Sbjct: 242 SGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQ 301
Query: 321 VTFTSLFAACCHAGLVEEG-----------LHL-------FDNMKSKWGVEPHIKH---- 358
T S+ +AC H G +E G LHL +M +K G + K
Sbjct: 302 TTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHH 361
Query: 359 --------YSCIVDLLGRAGHLEEAYNFIMGIPI---KPDAILWRSLLSACNVHGDVALG 407
++ +V L G EA N + + KPD +++ ++LSAC G V G
Sbjct: 362 MSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEG 421
Query: 408 EKVGKILLQ 416
++V ++Q
Sbjct: 422 KRVFDQMVQ 430
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 16/243 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F H N+ +N +I ++ VF + + G D T + L +CA
Sbjct: 256 IFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLG 315
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
SL G+ I+ ++ K ++ + LI +A D+ + K+VF M R TW
Sbjct: 316 SLEH---GKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTT 372
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
M++G K C A+ LF M ++ G KP D + VLS + GL+E G V
Sbjct: 373 MVSGLAVNGK----CR-EAINLFDKMCLE--GTKPDDVIFIAVLSACTHGGLVEEGKRVF 425
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHG 299
M + F + G +VD+ + G L+ A+ +RM K N + W + IHG
Sbjct: 426 DQMVQEFGIKPRIEHYG-CMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHG 484
Query: 300 KGN 302
G+
Sbjct: 485 NGD 487
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 252/489 (51%), Gaps = 64/489 (13%)
Query: 25 KQIHAQLI-TNALKSPPLYAQLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+QIHA LI N K+ + +L+ +Y C + + +F N + +N++I
Sbjct: 499 RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKE------IFNRMAERNAYSWNSMI 552
Query: 82 ----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ Q+++ +F G+ D F+ L SC SLS GR++H + +
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKP-DCFSLSSMLSSCV---SLSDSQKGRELHNFIVR 608
Query: 138 RGFMFNVLVATTLIHFYAS---------------NKDI----------------SSGKKV 166
++ L+ YA KD+ + K +
Sbjct: 609 NTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNL 668
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FDQM R++A WN+++ GY ++ K + +FN F +ML S ++ TMV ++++
Sbjct: 669 FDQMEQRNTALWNSILAGYANKGLKKE--SFNH---FLEML--ESDIEYDVLTMVTIVNL 721
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S L LE G +H + K ++ V + TALVDMYSKCG + A +F M KN++
Sbjct: 722 CSSLPALEHGDQLHSLIIKKGFV-NCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIV 780
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W AM +G + HG EA+ L + M G+ PN VTF ++ +AC H GLVEEGL +F +M
Sbjct: 781 SWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSM 840
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ + +E +HY+C+VDLLGRAG LE+A F+ +PI+P+ W +LL AC VH D+ +
Sbjct: 841 QEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDM 900
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
G + L +L P+ +V +SNIYA+A RW +VE +R+ MK+K V+ +PG
Sbjct: 901 GRLAAQRLFELDPQ--------NPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPG 952
Query: 467 SSILQTTTH 475
S ++ +
Sbjct: 953 VSWIEINSE 961
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 159/321 (49%), Gaps = 30/321 (9%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+FT+ AL C +L + G+Q+H + GF + V LI YA D S
Sbjct: 275 DNFTFASALRVCG---ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCV 223
KVFD+M R+ TWN++I S +A+ FN ALVLF M SG K + +
Sbjct: 332 KVFDEMGERNQVTWNSII------SAEAQFGHFNDALVLFLRM--QESGYKSNRFNLGSI 383
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L S+ L + G +HG++ + + +D+ +G+ALVDMYSKCG ++ A +F + E+
Sbjct: 384 LMASAGLADIGKGRELHGHLVRN--LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLER 441
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEG--- 339
N +++ A+ G GK EA+ L M+ + G++P+ TFT+L C + +G
Sbjct: 442 NEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQI 501
Query: 340 -LHLFD-NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
HL N+ VE + H + GR + +E +N + + +A W S++
Sbjct: 502 HAHLIRANITKNIIVETELVH---MYSECGRLNYAKEIFNRMA----ERNAYSWNSMIEG 554
Query: 398 CNVHGDVALGEKVGKILLQLQ 418
+G+ ++ ++ Q+Q
Sbjct: 555 YQQNGET---QEALRLFKQMQ 572
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 179/393 (45%), Gaps = 25/393 (6%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHF 69
AL A+ + KQ+H++LI K LI +Y K VF
Sbjct: 282 ALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLK----VFDEM 337
Query: 70 DPPNLFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LST 124
N +N++I D++++F G + F LGS + L+
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKS-----NRFNLGSILMASAGLAD 392
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
+ GR++H H+ + ++++ + L+ Y+ + +VF + R+ ++NA++ G
Sbjct: 393 IGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAG 452
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + K A AL L+ DM + G++P T +L++ + G +H ++
Sbjct: 453 YVQEGK-----AEEALELYHDMQSE-DGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI 506
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ ++ + T LV MYS+CG L+ A IF+RM E+N +W +M G +G+ EA
Sbjct: 507 RANITK--NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEA 564
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+RL M+ G+KP+ + +S+ ++C ++G L + + E I +VD
Sbjct: 565 LRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV-VLVD 623
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + G ++ A+ + IK D IL ++SA
Sbjct: 624 MYAKCGSMDYAWK-VYDQTIKKDVILNNVMVSA 655
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 100/384 (26%), Positives = 167/384 (43%), Gaps = 33/384 (8%)
Query: 25 KQIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
K IH Q+I+N +P Y +++ LY + +F NL +NT+I
Sbjct: 91 KSIHTQMISNGY-NPDAYLMTKILMLY-ARSGCLDDLCYARKLFEEMPERNLTAWNTMIL 148
Query: 83 CTPPQDSVL--VFAYWVSKGLLTFDD-FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
D + + Y +G F D FT+ + +C + + RQ+ V K G
Sbjct: 149 AYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGV---RQLQSSVVKAG 205
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
N+ V L+ YA + D++ S TWNA+I GY K ++
Sbjct: 206 LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGY------VKILSWEE 259
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
D ++ + GV P + T L V L + G VH + + + D F+G A
Sbjct: 260 AWGIFDRMLKI-GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF--KGDTFVGNA 316
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMY+KC ++ L +F M E+N +TW ++ + A G N+A+ L M++ G K N
Sbjct: 317 LIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSN 376
Query: 320 AVTFTSLFAACCHAGLVEEGL------HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
S+ A AGL + G HL N+ + I S +VD+ + G +E
Sbjct: 377 RFNLGSILMAS--AGLADIGKGRELHGHLVRNL-----LNSDIILGSALVDMYSKCGMVE 429
Query: 374 EAYNFIMGIPIKPDAILWRSLLSA 397
EA+ + ++ + + + +LL+
Sbjct: 430 EAHQVFRSL-LERNEVSYNALLAG 452
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 12/206 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASN---KDISSGKKVFDQMPMRSSATWNAMING 184
G+ IH + G+ + + T ++ YA + D+ +K+F++MP R+ WN MI
Sbjct: 90 GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y D L L+ M SG T V+ + + + G
Sbjct: 150 YARV-----DDYMEVLRLYGRM--RGSGNFSDKFTFPSVIKAC--IAMEDMGGVRQLQSS 200
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
++F+G ALVD Y++ G +D+A+ + +V+TW A+ G EA
Sbjct: 201 VVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEA 260
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAAC 330
+ D M GV P+ TF S C
Sbjct: 261 WGIFDRMLKIGVCPDNFTFASALRVC 286
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/403 (33%), Positives = 220/403 (54%), Gaps = 43/403 (10%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY+ L +C + +WLG Q+H V G + ++ V LI YA ++ + ++F
Sbjct: 125 TYITVLSACGKD---KYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELF 181
Query: 168 DQMPMRSSATWNAMINGY-----CSQSKKAKDCA---------------------FNALV 201
+ M +R++ +W ++I+G+ Q++ DC AL
Sbjct: 182 EGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALE 241
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
+FR+M S V+ + TMV V++ +QLG LE G YM + + + D F+G ALV
Sbjct: 242 MFREM--QFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSR--HGIKMDTFVGNALV 297
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMYSKCG + AL +F M ++ TWTA+ G+A++G G EAI + M P+ V
Sbjct: 298 DMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEV 357
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + AC HAGLV++G F +M +G+ P++ H+ C++DLLGRAG L+EA I
Sbjct: 358 TFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGN 417
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P++P++ +W +LL+AC VHG+ +G+ + LL+L E V ++ LSN+YA
Sbjct: 418 MPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMV--------YILLSNLYA 469
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDGFR 482
+ RW DV +R+ + K ++ EPG S+++ T H + G R
Sbjct: 470 KSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDR 512
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 52/348 (14%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT---WNAMIN 183
+G +H HV K G N VA++L+ YA+ D + + + D P R T WNA+I+
Sbjct: 37 VGDAVHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALIS 96
Query: 184 GY-CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G+ S+ + C+F +V +GV PT T + VLS + + G VH
Sbjct: 97 GHRRSRQFRLSCCSFVDMVR--------TGVVPTPVTYITVLSACGKDKYIWLGMQVHKC 148
Query: 243 MEKTFYMPENDVFIGTALVDMYSKC-------------------------------GCLD 271
+ + +P D+ +G AL+DMY++C G +D
Sbjct: 149 VVASGVLP--DLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVD 206
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F M E++ ++WTAM G G+ EA+ + M+ V+ + T S+ AC
Sbjct: 207 QARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACA 266
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
G +E G M S+ G++ + +VD+ + G +++A + I+ D W
Sbjct: 267 QLGALETGEWARIYM-SRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIR-DKFTW 324
Query: 392 RSLL--SACNVHGDVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFV 434
+++ A N HG+ A+ + + P EVTF+ V ACT V
Sbjct: 325 TAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLV 372
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 34/244 (13%)
Query: 78 NTLIRCTPPQDSV--------LVFAYWVSKGLLTF----------DDFTYVFALGSCARF 119
TL C P +D+V V A + L F D+FT V + +CA+
Sbjct: 209 RTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQL 268
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+L T G +++++ G + V L+ Y+ I VF +M +R TW
Sbjct: 269 GALET---GEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWT 325
Query: 180 AMINGYC--SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
A+I G ++A + + L +F P + T + VL+ + GL++ G
Sbjct: 326 AVILGLAVNGHGEEAINMFYRMLRVFE---------APDEVTFIGVLTACTHAGLVDKGR 376
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMA 296
M ++ + N + G L+D+ + G L AL M + N W +
Sbjct: 377 DFFLSMTGSYGIAPNVMHFG-CLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACR 435
Query: 297 IHGK 300
+HG
Sbjct: 436 VHGN 439
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 208/370 (56%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V L +CA+ S+ LGRQ+H + GF N+ + LI Y ++ +
Sbjct: 234 DESTMVTVLSACAQSASIE---LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAS 290
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+ + + +WN +I GY + + AL+LF++ML SG P + TM+ +L
Sbjct: 291 GLFEGLSYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGESPNEVTMLSIL 343
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F M ++
Sbjct: 344 PACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRS 403
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ N A + MR G++P+ +TF L +AC H+G+++ G H+F
Sbjct: 404 LSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFR 463
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG +G +EA I + + PD ++W SLL AC +HG+V
Sbjct: 464 SMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNV 523
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++P+ S +V LSNIYA+A RW +V R + K ++
Sbjct: 524 ELGESFAQNLIKIEPK--------NSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKV 575
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 576 PGCSSIEIDS 585
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 137/509 (26%), Positives = 225/509 (44%), Gaps = 96/509 (18%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF--VFTHFDPPNLFLF 77
T ++ IHA++I L + YA L +L SP + + VF PNL ++
Sbjct: 14 TLQSLRIIHAKMIKTGLHNTN-YA-LSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIW 71
Query: 78 NTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+ R + P ++ ++ +S GL+ + +T+ F L +CA+ + G+QIH
Sbjct: 72 NTMFRGHALSSDPVSALYLYVCMISLGLVP-NSYTFPFLLKACAKSKAFRE---GQQIHG 127
Query: 134 HVTKRGFMFNVLVATTLIHF-------------------------------YASNKDISS 162
HV K G ++ V T+LI YASN I S
Sbjct: 128 HVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXS 187
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+K+FD++P++ +WNA+I+GY + AL LF++M+ + VKP ++TMV
Sbjct: 188 AQKMFDEIPVKDVVSWNALISGYAETGNYKE-----ALELFKEMM--KTNVKPDESTMVT 240
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VLS +Q +E G VH +++ + +++ I AL+D+Y KCG ++ A +F +
Sbjct: 241 VLSACAQSASIELGRQVHSWIDDHGF--GSNLKIVNALIDLYIKCGEVETASGLFEGLSY 298
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--L 340
K+V++W + G EA+ L M G PN VT S+ AC H G ++ G +
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWI 358
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN---------------FIMGIP-- 383
H++ + + K GV + ++D+ + G +E A I G
Sbjct: 359 HVYIDKRLK-GVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMH 417
Query: 384 -----------------IKPDAILWRSLLSACNVHGDVALGEKV-------GKILLQLQP 419
I+PD I + LLSAC+ G + LG + KI +L+
Sbjct: 418 GRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEH 477
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPD 448
+D+ S F + S E PD
Sbjct: 478 YGCMIDLLGHSGLFKEAEEMINSMEMDPD 506
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 242/454 (53%), Gaps = 34/454 (7%)
Query: 25 KQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT---- 79
KQIHAQ++ + S + L ++Y A K VF ++ +NT
Sbjct: 266 KQIHAQIVESEHHSDVRVSTALTKMYIKCGA----VKDAREVFECLPNRDVIAWNTMIGG 321
Query: 80 LIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
L+ +++ +F + + K + D TY+ L +CAR L+ G++IH K G
Sbjct: 322 LVDSGQLEEAHGMF-HRMLKECVAPDRVTYLAILSACARPGGLAC---GKEIHARAVKDG 377
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA--F 197
+ +V LI+ Y+ + ++VFD+MP R +W A++ GY DC
Sbjct: 378 LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA-------DCGQVV 430
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+ F+ ML GV+ T +CVL S L++G +H + K D+ +
Sbjct: 431 ESFSTFKKMLQQ--GVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFA--DLAVA 486
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
AL+ MY KCG +++A+ + M ++V+TW + G+A +G+G EA++ + M+ ++
Sbjct: 487 NALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMR 546
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PNA TF ++ +AC LVEEG F +M+ +G+ P KHY+C+VD+L RAGHL EA +
Sbjct: 547 PNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAED 606
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I+ +P KP A +W +LL+AC HG+V +GE+ + L+L+P+ + +V+LS
Sbjct: 607 VILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQ--------NAGTYVSLS 658
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
IYA+A W DV +RK MK + V+ EPG S ++
Sbjct: 659 FIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIE 692
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 191/410 (46%), Gaps = 26/410 (6%)
Query: 25 KQIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQ+H ++ +K P +Y L++LY + ++ ++ F F ++ +N +I
Sbjct: 64 KQVHEHILRFGMK-PNVYIINTLLKLYVHCGSVNEARRL----FDKFSNKSVVSWNVMIS 118
Query: 83 CTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
Q++ +F +GL D FT+V L +C+ +L+ W GR++HV V +
Sbjct: 119 GYAHRGLGQEAFNLFTLMQQEGLEP-DKFTFVSILSACSSPAALN--W-GREVHVRVMEA 174
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G N V LI YA + ++VFD M R +W + Y ++S A++
Sbjct: 175 GLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY-AESGYAQE---- 229
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
+L + ML + GV+P+ T + VLS L LE G +H + ++ + +DV + T
Sbjct: 230 SLKTYHAMLQE--GVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEH--HSDVRVST 285
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL MY KCG + +A +F + ++V+ W M G+ G+ EA + M V P
Sbjct: 286 ALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAP 345
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ VT+ ++ +AC G + G + K G+ ++ + ++++ +AG +++A
Sbjct: 346 DRVTYLAILSACARPGGLACGKEIHARA-VKDGLVSDVRFGNALINMYSKAGSMKDARQV 404
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
+P K D + W +L+ G V K +LQ E + C
Sbjct: 405 FDRMP-KRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMC 453
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 182/406 (44%), Gaps = 59/406 (14%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
V Y KG D + YV L SC + L+ +G+Q+H H+ + G NV + TL+
Sbjct: 31 VLQYLHQKGS-QVDSYDYVKLLQSCVKAKDLA---VGKQVHEHILRFGMKPNVYIINTLL 86
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
Y ++ +++FD+ +S +WN MI+GY + + AFN L +
Sbjct: 87 KLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQE--AFNLFTLMQQ-----E 139
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVH-GYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
G++P T V +LS S L +G VH ME N+ +G AL+ MY+KCG +
Sbjct: 140 GLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGL---ANNATVGNALISMYAKCGSV 196
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+A +F M ++ ++WT + A G E+++ +M GV+P+ +T+ ++ +AC
Sbjct: 197 RDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSAC 256
Query: 331 -----------CHAGLVEEGLH-------LFDNMKSKWGVEPHIKH------------YS 360
HA +VE H M K G + ++
Sbjct: 257 GSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWN 316
Query: 361 CIVDLLGRAGHLEEAYNF---IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ- 416
++ L +G LEEA+ ++ + PD + + ++LSAC G +A G+++ ++
Sbjct: 317 TMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD 376
Query: 417 -LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
L +V F + AL N+Y+ A D V +M + V
Sbjct: 377 GLVSDVRFGN---------ALINMYSKAGSMKDARQVFDRMPKRDV 413
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 160/511 (31%), Positives = 245/511 (47%), Gaps = 74/511 (14%)
Query: 15 LKAITTPS----HIKQIHAQLITNALKS----PPLYAQLIQLYCTK---KASPQSTKIVH 63
L A+ PS ++Q HA+L L + P L A L +L K + H
Sbjct: 35 LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94
Query: 64 F-----VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF-----TYVFAL 113
+ +F + + F N L+R P + +F+ + + +F ++ A
Sbjct: 95 YAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLLASISNHLNAA 154
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS----------- 162
G A CS +LG +H K G ++ V L+HFY + D+ +
Sbjct: 155 GPSASACS----FLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRV 210
Query: 163 ---------------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
++VFD+MP+R +W+ ++ GY + + AL
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEV-----ALG 265
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
+FR+M+ GV+P +V LS +++LGLLE G VH ++++ MP + +G ALV
Sbjct: 266 VFRNMVE--QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSG-MPVC-MNVGAALV 321
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KCGC+ A +F MR ++V W AM G+A HG G +A+ L + G+ P V
Sbjct: 322 DMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNV 381
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + C +GLV EG F + K+ +EP ++HY C+VDLLGRAG + EA I G
Sbjct: 382 TFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEG 441
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ I PD +LW ++LS+C HG V LG VG L++L P S +V LS IYA
Sbjct: 442 MHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDP--------THSGYYVLLSGIYA 493
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQT 472
A +W +V VRK M + G S+++
Sbjct: 494 KANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 199/362 (54%), Gaps = 51/362 (14%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC------------- 186
F+ NV++A Y S +++ +KVFD MPMR +WN MI+GY
Sbjct: 24 FLCNVMLAA-----YVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFD 78
Query: 187 -----------------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
++S+++K+ AL L+R+M + + P T+V V+S S
Sbjct: 79 GTEDRDAFSWSSMISAYAKSRRSKE----ALELWREM--HAASIIPDCITLVSVVSACSD 132
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG L GA VH ++E E D+ +GTAL+DMY+KCG +++A +F RM EK+V TW+
Sbjct: 133 LGALAVGAEVHRFVESNRI--ELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWS 190
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+M G+A HG G+E++ L M G+KPN VTF + AC H GLV EG F +M
Sbjct: 191 SMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEV 250
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
G+EP ++HY C+VDLLGR+GH+EEA I + +PD I+WR+LL AC +H +V + E+
Sbjct: 251 HGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEE 310
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
L L P +V LSNIYA A W V +RK ++ ++ PG S
Sbjct: 311 AMAKLRVLDP--------LGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSS 362
Query: 470 LQ 471
++
Sbjct: 363 IE 364
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 18/216 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T V + +C+ L L +G ++H V ++ + T LI YA DI S +
Sbjct: 119 DCITLVSVVSACS---DLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQ 175
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VFD+MP + TW++MI G + +L LF M+ + G+KP T V VL
Sbjct: 176 RVFDRMPEKDVQTWSSMIIGLANHG-----LGHESLSLFSKMISE--GMKPNGVTFVGVL 228
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL-LIFSRMREK 283
+ +GL+ G M + + G +VD+ + G ++ A LI S E
Sbjct: 229 IACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG-CMVDLLGRSGHVEEARQLIRSMTFEP 287
Query: 284 NVLTWTAMATGMAIHGK---GNEA---IRLLDSMRD 313
+ + W A+ IH EA +R+LD + D
Sbjct: 288 DTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGD 323
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 44/230 (19%)
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG---------- 299
P DVF+ ++ Y + A +F M +++++W M G A+ G
Sbjct: 19 PLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFD 78
Query: 300 ---------------------KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
+ EA+ L M + P+ +T S+ +AC G +
Sbjct: 79 GTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAV 138
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G + ++S +E +K + ++D+ + G +E A +P K D W S++
Sbjct: 139 GAEVHRFVESN-RIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEK-DVQTWSSMIIGL 196
Query: 399 NVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFVALSNIY 440
HG LG + + ++ E VTFV V ACT V+ Y
Sbjct: 197 ANHG---LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKY 243
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 197/329 (59%), Gaps = 16/329 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T ++ YA + + +FD +P + WNAMI+GY + + AL L
Sbjct: 452 HVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNE-----ALRL 506
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR ML SGV+P + T+V VLS +QLG +E G +H Y++ + + + V +GTAL+D
Sbjct: 507 FRRMLG--SGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRV-QLSVRVGTALID 563
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG L +A+ +F + +K+++ W AM G A+HG +A+ + R+ G+ P +T
Sbjct: 564 MYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDIT 623
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L AC H+G+VEEG F +M+ ++G++P I+HY C+VDLLGRAG ++EA+ + +
Sbjct: 624 FIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSM 683
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
I PDA++W SLL+AC +H +++LG+++ L+ S ++ LSNIYA+
Sbjct: 684 KITPDAVMWVSLLAACRLHKNMSLGQQIADYLV--------AKGLANSGMYILLSNIYAA 735
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
W +V VR MK ++ EPG S ++
Sbjct: 736 VGNWGEVARVRSMMKASGIQKEPGCSSIE 764
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 135/319 (42%), Gaps = 47/319 (14%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFM--FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
S ST ++H V + G + + VA L YA++ + + + ++
Sbjct: 296 LTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAI 355
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+ + I+ + S+ + AL L DML G+ PT T+ L L G
Sbjct: 356 FYTSAIHAHSSRGHR-----LPALALLSDMLA--QGLLPTAHTLSASLPACRGL---SPG 405
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---------------------------- 268
+HGY K D ++ TAL+ MY++ G
Sbjct: 406 RALHGYAFKLAL--AGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCY 463
Query: 269 ----CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
LD+A +F + K+ + W AM G HG+ NEA+RL M GV+P+ VT
Sbjct: 464 ADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVV 523
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ +A G VE G L +K+ V+ ++ + ++D+ + G L +A + GI
Sbjct: 524 LVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGD 583
Query: 385 KPDAILWRSLLSACNVHGD 403
K D ++W ++++ +HGD
Sbjct: 584 K-DIVVWNAMINGYAMHGD 601
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 28/300 (9%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV-TKRGFMFNV 144
P +++ +F + G+ D+ T V L + A+ L T+ G+ +H +V R +V
Sbjct: 500 PNEALRLFRRMLGSGV-EPDEVTVVLVLSAVAQ---LGTVESGKWLHSYVKNSRRVQLSV 555
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
V T LI Y + VF + + WNAMINGY K A V R
Sbjct: 556 RVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRK--ALEMFVQSR 613
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
+ G+ PTD T + +L+ S G++E G ME+ + + G +VD+
Sbjct: 614 E-----QGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYG-CMVDLL 667
Query: 265 SKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA--V 321
+ G + A + M+ + + W ++ +H + ++ D + G+ + +
Sbjct: 668 GRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYI 727
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
++++AA + G V +M G++ S +D E Y F+ G
Sbjct: 728 LLSNIYAAVGNWGEVAR----VRSMMKASGIQKEPGCSSIEID--------REVYEFVAG 775
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/421 (32%), Positives = 215/421 (51%), Gaps = 19/421 (4%)
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+F + P+L +N +I + L + + + +G
Sbjct: 265 LLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFG 324
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
L L IH K G + N V+T Y +I + +FD+ P ++ WNAMI+
Sbjct: 325 HLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMIS 384
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY A+ LF++M+ + P T+ +LS +QLG L FG VH +
Sbjct: 385 GYTQNGSTE-----TAISLFKEMMK--TEFTPNAVTITTILSACAQLGSLSFGKWVHHLI 437
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+ P ++++ TALVDMY+KCG + A +F M EKN +TW M G +HG G+E
Sbjct: 438 KSENLEP--NIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHE 495
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A++L + M G P+AVTF S+ AC HAGLV EG +F NM +K+ +EP I+HY+C+V
Sbjct: 496 ALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMV 555
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
D+LGR+G LE+A FI +P++P +W +LL AC +H D + + L +L P
Sbjct: 556 DILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPG--- 612
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDGF 481
+ +V LSNIY+ +P S+R+ +K +++ PG ++++ T H + G
Sbjct: 613 -----SVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGD 667
Query: 482 R 482
R
Sbjct: 668 R 668
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 130/494 (26%), Positives = 221/494 (44%), Gaps = 76/494 (15%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
F+L+ KA T P H+ Q HAQ I N + A L +L K +T+ +F
Sbjct: 16 FSLIN-KASTFP-HLAQTHAQFILNGYRFD--LATLTKL-TQKLFDFSATRHARALFFSV 70
Query: 70 DPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
P++FLFN L+R P S+ ++ + L+ D+FTY FA+ +C+ L L
Sbjct: 71 PKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLL 130
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
H H G+ NV V + L+ Y + +KVFD MP R + WN MING
Sbjct: 131 ------HAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGL 184
Query: 186 CSQSKKAKDCAF-NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
K+C F +++ LFR+M+ D GV+ +T+ VL +++L L+ G +
Sbjct: 185 ------VKNCCFDDSIQLFREMVAD--GVRVDSSTVTAVLPAAAELQELKVGMGIQCLAL 236
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
K + + ++ T L+ +YSKCG ++ A L+F R+ +++ + AM +G +G +
Sbjct: 237 KIGFGFCD--YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECS 294
Query: 305 IRLLDSMRDCGVKPNAVT----------FTSLFAACC-HAGLVEEGL------------- 340
++L + G + ++ T F L AC H V+ G+
Sbjct: 295 VKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAI 354
Query: 341 -----------HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKP 386
HLFD K V ++ ++ + G E A + +M P
Sbjct: 355 YNKLNEIDLARHLFDESPEKTVVA-----WNAMISGYTQNGSTETAISLFKEMMKTEFTP 409
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILL--QLQPEVTFVDVACTSEDFVALSNIYASAE 444
+A+ ++LSAC G ++ G+ V ++ L+P + +V A + + NI +E
Sbjct: 410 NAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNI-YVSTALV-DMYAKCGNI---SE 464
Query: 445 RWPDVESVRKQMKV 458
W +S+ ++ V
Sbjct: 465 AWQLFDSMSEKNTV 478
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/450 (32%), Positives = 245/450 (54%), Gaps = 24/450 (5%)
Query: 27 IHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTP 85
+H LI + P A +LI +Y + + K VF ++++N L R
Sbjct: 100 LHRHLIHDGSDQDPFLATKLINMYSELDSIDNARK----VFDKTRKRTIYVWNALFRALT 155
Query: 86 PQD---SVLVFAYWVSKGLLTFDDFTYVFALGSC-ARFCSLSTLWLGRQIHVHVTKRGFM 141
VL +++ + D FTY + L +C A +S L GR+IH H+ + GF
Sbjct: 156 LAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFE 215
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+V + TTL+ YA + + +VFDQMP+++ +W+AMI Y K AL
Sbjct: 216 GHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGK-----PLEALE 270
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR M+++ + P TMV VL + L LE G +HGY+ + ++ + + +ALV
Sbjct: 271 LFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGL--DSILPVVSALV 328
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
+Y++CG L+ +F RM +++V++W ++ + IHG G +AI++ M D G+ P+ +
Sbjct: 329 TVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPI 388
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+F S+ AC HAGLVEEG LF++M + P ++HY+C+VDLLGRA L+EA I
Sbjct: 389 SFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDD 448
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ I+P +W SLL +C +H +V L E+ L +L+P + ++V L++IYA
Sbjct: 449 MRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEP--------TNAGNYVLLADIYA 500
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A+ W +V+ V+ ++ + ++ PG S ++
Sbjct: 501 EAKMWNEVKRVKMLLEARGLQKVPGRSCIE 530
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 167/347 (48%), Gaps = 43/347 (12%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY + SC R SL G +H H+ G + +AT LI+ Y+ I + +KVF
Sbjct: 80 TYELLILSCTRQNSLPQ---GIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVF 136
Query: 168 DQMPMRSSATWNAM-----INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT---T 219
D+ R+ WNA+ + GY + L L+R M + GV P+D T
Sbjct: 137 DKTRKRTIYVWNALFRALTLAGYGRE----------VLDLYRRM--NRIGV-PSDRFTYT 183
Query: 220 MVCVLSVSSQ--LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
V V+S+ + LL G +HG++ + + E V I T L+DMY++ GC+ NA +F
Sbjct: 184 YVLKACVASEAFVSLLLNGREIHGHILRHGF--EGHVHIMTTLLDMYARFGCVLNASRVF 241
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGL 335
+M KNV++W+AM + +GK EA+ L M + + PN+VT S+ AC
Sbjct: 242 DQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAA 301
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+E+G L + G++ + S +V + R G+LE + + K D + W SL+
Sbjct: 302 LEQG-KLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLI 359
Query: 396 SACNVHGDVALGEKVGKILLQ-----LQPE-VTFVDV--ACTSEDFV 434
S+ +HG G K +I + L P ++FV V AC+ V
Sbjct: 360 SSYGIHG---FGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLV 403
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 160/511 (31%), Positives = 245/511 (47%), Gaps = 74/511 (14%)
Query: 15 LKAITTPS----HIKQIHAQLITNALKS----PPLYAQLIQLYCTK---KASPQSTKIVH 63
L A+ PS ++Q HA+L L + P L A L +L K + H
Sbjct: 35 LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94
Query: 64 F-----VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF-----TYVFAL 113
+ +F + + F N L+R P + +F+ + + +F ++ A
Sbjct: 95 YAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLLASISNHLNAA 154
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS----------- 162
G A CS +LG +H K G ++ V L+HFY + D+ +
Sbjct: 155 GPSASACS----FLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRV 210
Query: 163 ---------------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
++VFD+MP+R +W+ ++ GY + + AL
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEV-----ALG 265
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
+FR+M+ GV+P +V LS +++LGLLE G VH ++++ MP + +G ALV
Sbjct: 266 VFRNMVE--QGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSG-MPVC-MNVGAALV 321
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KCGC+ A +F MR ++V W AM G+A HG G +A+ L + G+ P V
Sbjct: 322 DMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNV 381
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + C +GLV EG F + K+ +EP ++HY C+VDLLGRAG + EA I G
Sbjct: 382 TFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEG 441
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ I PD +LW ++LS+C HG V LG VG L++L P S +V LS IYA
Sbjct: 442 MHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDP--------THSGYYVLLSGIYA 493
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQT 472
A +W +V VRK M + G S+++
Sbjct: 494 KANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/388 (35%), Positives = 217/388 (55%), Gaps = 37/388 (9%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV L +C + L LG Q+H V + G + + V L+ YA D+ + +F
Sbjct: 163 TYVSVLSACGKG---KDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLF 219
Query: 168 DQMPMRSSATWNAMINGYC--SQSKKAKD----------CAFNALV-------LFRDML- 207
+ M MRS A+W ++I+G Q +A+D A+ A++ FRD L
Sbjct: 220 EGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALE 279
Query: 208 ----VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
+ + V+ + TMV V++ +QLG LE G YM + + DVF+G AL+DM
Sbjct: 280 TFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGI--KMDVFVGNALIDM 337
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
YSKCG ++ AL +F M ++ TWTA+ G+A++G+G EAI + M P+ VTF
Sbjct: 338 YSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTF 397
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ AC HAGLV++G F +M + + P + HY C++D+LGRAG L+EA + I +P
Sbjct: 398 VGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMP 457
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
+KP++ +W +LL++C V+G+ +GE + LL+L P+ S ++ LSN+YA +
Sbjct: 458 MKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPD--------NSTAYILLSNMYAKS 509
Query: 444 ERWPDVESVRKQMKVKRVETEPGSSILQ 471
RW DV +R+ + K ++ EPG S+++
Sbjct: 510 NRWKDVRRIRQIIMEKGIKKEPGCSMIE 537
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 150/347 (43%), Gaps = 57/347 (16%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA----TWNAMINGYC 186
IH HV K G N A++LI YA+ D ++ + V + + + WNA+I+G+
Sbjct: 78 IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ C F DM+ + T T V VLS + L G VH + ++
Sbjct: 138 RSGRFELSCCS-----FVDMV--RASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLES 190
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+P D + ALVDMY++CG +D A ++F M+ +++ +WT++ +G+ G+ + A
Sbjct: 191 GVLP--DQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARD 248
Query: 307 LLDSM--RD-----------------------------CGVKPNAVTFTSLFAACCHAGL 335
L D M RD C V+ + T S+ AC G
Sbjct: 249 LFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGA 308
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+E G M + G++ + + ++D+ + G +E A + + + D W +++
Sbjct: 309 LETGEWARIYM-GRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNR-DKFTWTAII 366
Query: 396 SACNVHGDVALGEKVGKIL------LQLQPEVTFVDV--ACTSEDFV 434
V+G GE+ + LQ EVTFV V ACT V
Sbjct: 367 LGLAVNGR---GEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLV 410
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 14/219 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+FT V + +CA+ +L T G +++ + G +V V LI Y+ I
Sbjct: 292 DEFTMVSVVTACAQLGALET---GEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERAL 348
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF M R TW A+I G + + A+ +F ML + P + T V VL
Sbjct: 349 DVFKDMHNRDKFTWTAIILGLAVNGRGEE-----AIDMFYRMLRALQ--TPDEVTFVGVL 401
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK- 283
+ + GL++ G M + + + V G L+D+ + G L AL +M K
Sbjct: 402 TACTHAGLVDKGREFFLSMTEAYNISPTVVHYG-CLIDVLGRAGKLKEALDTIDKMPMKP 460
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
N W + ++ GN I L + R + P+ T
Sbjct: 461 NSTIWGTLLASCRVY--GNSEIGELAAERLLELDPDNST 497
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 205/370 (55%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H + GF N+ + LI Y+ ++ +
Sbjct: 196 DESTMVTVVSACAQSGSIE---LGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F + + +WN +I G+ + + AL+LF++ML SG P D TM+ VL
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKE-----ALLLFQEMLR--SGESPNDVTMLSVL 305
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y+ K N + T+L+DMY+KCG ++ A +F M ++
Sbjct: 306 PACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRS 365
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HGK N A L MR G+ P+ +TF L +AC H+G+++ G H+F
Sbjct: 366 LSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFR 425
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG G +EA I +P++PD ++W SLL AC +H +V
Sbjct: 426 SMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNV 485
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE +V LSNIYA+A RW V +R + K ++
Sbjct: 486 ELGESYAQNLIKIEPE--------NPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKA 537
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 538 PGCSSIEIDS 547
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 191/418 (45%), Gaps = 75/418 (17%)
Query: 65 VFTHFDPPNLFLFNTLIRCTP-PQDSVLVFAYWV---SKGLLTFDDFTYVFALGSCARFC 120
+F PNL ++NT+ R DSV +V S GLL + +++ F L SCA+
Sbjct: 21 IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLP-NSYSFPFLLKSCAKSK 79
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L G+QIH HV K G+ ++ V T+LI YA N + KVFD+ R ++ A
Sbjct: 80 ALIE---GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTA 136
Query: 181 MINGYCSQ-------------------------SKKAKDCAF-NALVLFRDMLVDVSGVK 214
+I GY S+ S + C F AL L++DM+ + VK
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM--KTNVK 194
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P ++TMV V+S +Q G +E G +H ++E + +++ I L+D+YSKCG ++ A
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGF--GSNIKIVNVLIDLYSKCGEVETAC 252
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F + +K+V++W + G EA+ L M G PN VT S+ AC H G
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 312
Query: 335 LVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN--------------- 377
++ G +H++ N + K GV + ++D+ + G +E A
Sbjct: 313 AIDIGRWIHVYINKRLK-GVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371
Query: 378 FIMGIP-------------------IKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
I G I PD I + LLSAC+ G + LG + + + Q
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 429
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
L A+ IF ++E N+L W M G A++ A++L M G+ PN+ +F L +
Sbjct: 15 LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
C + + EG + ++ K G + + + ++ + + G LE+A+
Sbjct: 75 CAKSKALIEGQQIHGHVL-KLGYDLDMYVNTSLISMYAQNGRLEDAH 120
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 155/493 (31%), Positives = 259/493 (52%), Gaps = 69/493 (13%)
Query: 21 PSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
P H ++H+ +I + +S LI LY + + +F +L +NT
Sbjct: 129 PGH--EVHSHIIKHGFESDLFVRNALIHLYSVFG----NLNLARTLFDESLVRDLVSYNT 182
Query: 80 LIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+I+ P+ ++ +F + G+L D+FT+V C+ L+ +G+QIH V
Sbjct: 183 MIKGYAEVNQPESALCLFGEMQNSGILP-DEFTFVALFSVCS---VLNEPNVGKQIHAQV 238
Query: 136 TK--RGFMFNVLVATTLIHFYA----------------SNK----------------DIS 161
K R N+L+ + ++ YA ++K +I+
Sbjct: 239 YKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEIN 298
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+K+F+ M R +W AMI+GY +A C+ AL LF++M + G+KP + T+V
Sbjct: 299 VARKLFNHMHERDVISWTAMISGY----SQAGQCS-EALELFKEM--EALGIKPDEVTLV 351
Query: 222 CVLSVSSQLGLLEFGACV-HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VLS ++LG + G + H Y+E + + + A++DMY+KCG +D+AL IF R+
Sbjct: 352 AVLSACARLGAFDLGKRLYHQYIENGVF--NQNTILTAAVMDMYAKCGSIDSALEIFRRV 409
Query: 281 RE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
+ K + +M G+A HG G AI + + G+KP+ VTF + AC H+GL+EE
Sbjct: 410 GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEE 469
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G LF++M + +G++P ++HY C+VDLLGR G LEEAY+ + +P + ++++WR+LLSAC
Sbjct: 470 GKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSAC 529
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
HG+V +GE G+ LL+++ + +V LSNI A A +W + VRK M+
Sbjct: 530 RTHGNVKIGEIAGQKLLEMEAQ--------HGARYVLLSNILADANQWEEARQVRKVMED 581
Query: 459 KRVETEPGSSILQ 471
+ PG S ++
Sbjct: 582 HGIRKPPGWSYIE 594
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/448 (27%), Positives = 214/448 (47%), Gaps = 58/448 (12%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR--- 82
QIHAQ I N L + + + S +F+ D PNLF++NT+IR
Sbjct: 27 QIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYS 86
Query: 83 -CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
P+++++++ ++KG+ ++FT+ F L SCAR LS+L G ++H H+ K GF
Sbjct: 87 RSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR---LSSLEPGHEVHSHIIKHGFE 143
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
++ V LIH Y+ +++ + +FD+ +R ++N MI GY ++ +AL
Sbjct: 144 SDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPE-----SALC 198
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LF +M SG+ P + T V + SV S L G +H + K ++++ + +A+V
Sbjct: 199 LFGEM--QNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIV 256
Query: 262 DMYSKCGCLDNALLIFS--------------------------------RMREKNVLTWT 289
DMY+KCG ++ A +FS M E++V++WT
Sbjct: 257 DMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWT 316
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AM +G + G+ +EA+ L M G+KP+ VT ++ +AC G + G L+
Sbjct: 317 AMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIEN 376
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFI--MGIPIKPDAILWRSLLSACNVHGDVALG 407
+ + ++D+ + G ++ A +G +K ++ S+++ HG LG
Sbjct: 377 GVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKT-GFVFNSMIAGLAQHG---LG 432
Query: 408 EKVGKILLQ-----LQP-EVTFVDVACT 429
E + + L+P EVTFV V C
Sbjct: 433 ETAITVFRELISTGLKPDEVTFVGVLCA 460
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 20/291 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYA---SNKDISSGKKVFDQMPMRSSATWNAMING 184
G QIH G + + LI F++ S + + +F Q+ + WN MI G
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT-TMVCVLSVSSQLGLLEFGACVHGYM 243
Y S+S ++ A+VL+ M+ G+ P + T +L+ ++L LE G VH ++
Sbjct: 85 Y-SRSDNPRE----AIVLYMSMIA--KGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 137
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
K + E+D+F+ AL+ +YS G L+ A +F ++++++ M G A +
Sbjct: 138 IKHGF--ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPES 195
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACC--HAGLVEEGLH--LFDNMKSKWGVEPHIKHY 359
A+ L M++ G+ P+ TF +LF+ C + V + +H ++ N++S ++ +I
Sbjct: 196 ALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRS---IDSNILLK 252
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
S IVD+ + G + A + A W S++ G++ + K+
Sbjct: 253 SAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKL 303
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 222/405 (54%), Gaps = 29/405 (7%)
Query: 72 PNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW- 126
P+ F +N +IR P+ ++ V+ + G+L D +T F +LS +
Sbjct: 222 PSSFYWNIIIRSYTRLEVPRIALFVYIDMLRAGILP-DCYTLPIV------FKALSLAYA 274
Query: 127 --LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
LG Q+H + GF F+ + LI Y+ D+ KVF+Q R +WNA+I G
Sbjct: 275 FDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAG 334
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
SQ +AK+ A N + R SG++P D T+V V S LG LE +H ++
Sbjct: 335 -LSQGGRAKE-AVNMFIKLRQ-----SGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVF 387
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ ++++ + +L+DMY KCG +D A+ +FS M +NV +WT++ G A+HG+ +A
Sbjct: 388 QVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQA 447
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ MR+ GV PN VTF + +AC H G++ EG H FD MK+ +G +P + HY C+VD
Sbjct: 448 LENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVD 507
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LL +AG LEEA I +P+K ++I+W L+ C HG+V +GE GK L +L+P V
Sbjct: 508 LLSKAGLLEEARRMIEEMPMKANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGV 567
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+V LSNIYA+ W + + +R MK +++ PG S+
Sbjct: 568 --------YVVLSNIYATNGMWKEAQKMRDVMKQRQLAKVPGYSL 604
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/454 (32%), Positives = 240/454 (52%), Gaps = 34/454 (7%)
Query: 25 KQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
KQIHA ++ + S + L ++Y A + + VF ++ +NT+IR
Sbjct: 250 KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDARE----VFECLSYRDVIAWNTMIRG 305
Query: 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+++ F + +G+ D TY L +CAR L+ G++IH K G
Sbjct: 306 FVDSGQLEEAHGTFHRMLEEGVAP-DRATYTTVLSACARPGGLAR---GKEIHARAAKDG 361
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC--AF 197
+ +V LI+ Y+ + ++VFD+MP R +W ++ Y DC
Sbjct: 362 LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA-------DCDQVV 414
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+ F+ ML GVK T +CVL S L++G +H + K + D+ +
Sbjct: 415 ESFTTFKQMLQ--QGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLA--DLAVT 470
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
AL+ MY KCG +++A+ +F M ++V+TW + G+ +G+G EA++ + M+ G++
Sbjct: 471 NALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMR 530
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PNA TF ++ +AC LVEEG F M +G+ P KHY+C+VD+L RAGHL EA +
Sbjct: 531 PNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAED 590
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I+ IP+KP A +W +LL+AC +H +V +GE+ + L+L+P+ + +V+LS
Sbjct: 591 VILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGL--------YVSLS 642
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
IYA+A W DV +RK MK + V+ EPG S ++
Sbjct: 643 AIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIE 676
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 183/406 (45%), Gaps = 59/406 (14%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
V Y KG D + YV L SC + L+ +G+Q+H H+ + G NV + TL+
Sbjct: 15 VLQYLHRKGP-QVDSYDYVKLLQSCVKAKDLA---VGKQVHEHILRCGVKPNVYITNTLL 70
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
YA ++ +++FD+ +S +WN MI+GY + + AFN L +
Sbjct: 71 KLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQE--AFNLFTLMQQ-----E 123
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVH-GYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
++P T V +LS S +L +G +H ME ND +G AL+ MY+KCG +
Sbjct: 124 RLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGL---ANDTTVGNALISMYAKCGSV 180
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+A +F M ++ ++WT + A G G E+++ +M V+P+ +T+ ++ +AC
Sbjct: 181 RDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSAC 240
Query: 331 -----------CHAGLVEEGLH-------LFDNMKSKWGVEPHIKH-YSCIV--DLLG-- 367
HA +VE H M K G + + C+ D++
Sbjct: 241 GSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWN 300
Query: 368 -------RAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ- 416
+G LEEA ++ ++ + PD + ++LSAC G +A G+++ +
Sbjct: 301 TMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD 360
Query: 417 -LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
L +V F + AL N+Y+ A D V +M + V
Sbjct: 361 GLVSDVRFGN---------ALINMYSKAGSMKDARQVFDRMPKRDV 397
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 138/296 (46%), Gaps = 14/296 (4%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
TY+ L +C SL+ L G+QIH H+ + + +V V+T L Y ++V
Sbjct: 231 ITYMNVLSACG---SLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREV 287
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
F+ + R WN MI G+ + + A F ML + GV P T VLS
Sbjct: 288 FECLSYRDVIAWNTMIRGFVDSGQLEE-----AHGTFHRMLEE--GVAPDRATYTTVLSA 340
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
++ G L G +H K + +DV G AL++MYSK G + +A +F RM +++V+
Sbjct: 341 CARPGGLARGKEIHARAAKDGLV--SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 398
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+WT + A + E+ M GVK N +T+ + AC + ++ G + +
Sbjct: 399 SWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEV 458
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
K G+ + + ++ + + G +E+A G+ ++ D + W +L+ +G
Sbjct: 459 -VKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLGQNG 512
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 216/379 (56%), Gaps = 23/379 (6%)
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
V G + + T L +C L LGR + G + LV + L+ Y
Sbjct: 221 VKDGAVVPNAVTLAVVLAACR---DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEK 277
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+I+ ++VFD + + WNAMI GY + A+ LF +M +GV P
Sbjct: 278 CGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNE-----AISLFHNM--KKAGVCPD 330
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYME-KTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T+ VLS S +G LE G+ + GY + Y N+V++GTALVDMY+KCG LD A+
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLY---NNVYVGTALVDMYAKCGDLDKAIE 387
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAG 334
+F +MR KNV +W A+ G+A +G+G+EAI+ + MR + G+KP+ +TF + +AC HAG
Sbjct: 388 VFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAG 447
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV++G F+++ S++ + P I+HYSC+VDLL R+GHLEE ++FI IP K DA++ +L
Sbjct: 448 LVKDGKRWFNSLTSEFQIIPKIEHYSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGAL 507
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L+AC +V +GE+V ++QL+P S ++V S IYAS+ R D +R
Sbjct: 508 LAACRKCKNVEIGERVINRIIQLEP--------TNSWNYVVSSKIYASSGRLDDSAKMRG 559
Query: 455 QMKVKRVETEPGSSILQTT 473
M+ + V PG S ++ +
Sbjct: 560 PMRERGVNKTPGCSWVEIS 578
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 147/306 (48%), Gaps = 26/306 (8%)
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV--LFRDM 206
+LI Y+ D + +KVF+ +P R +WNAM+ Y N V + RDM
Sbjct: 168 SLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGR-------VGMNGEVGRMLRDM 220
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
+ D V P T+ VL+ G L G V + K+ M E D +G+ALV MY K
Sbjct: 221 VKD-GAVVPNAVTLAVVLAACRDEGDLVLGRWVEEW-SKSAGM-ETDSLVGSALVGMYEK 277
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG + A +F + +K+V+ W AM TG A +G NEAI L +M+ GV P+ +T +
Sbjct: 278 CGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGV 337
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+AC G +E G L D S G+ ++ + +VD+ + G L++A + K
Sbjct: 338 LSACSAVGALELGSEL-DGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCK- 395
Query: 387 DAILWRSLLS--ACNVHGDVALGE-KVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIY 440
+ W +L+ A N GD A+ ++ + L+P ++TF+ V AC V
Sbjct: 396 NVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLV------ 449
Query: 441 ASAERW 446
+RW
Sbjct: 450 KDGKRW 455
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 160/511 (31%), Positives = 245/511 (47%), Gaps = 74/511 (14%)
Query: 15 LKAITTPS----HIKQIHAQLITNALKS----PPLYAQLIQLYCTK---KASPQSTKIVH 63
L A+ PS ++Q HA+L L + P L A L +L K + H
Sbjct: 35 LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94
Query: 64 F-----VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF-----TYVFAL 113
+ +F + + F N L+R P + +F+ + + +F ++ A
Sbjct: 95 YAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLLASISNHLNAA 154
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS----------- 162
G A CS +LG +H K G ++ V L+HFY + D+ +
Sbjct: 155 GPSASACS----FLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRV 210
Query: 163 ---------------------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
++VFD+MP+R +W+ ++ GY + + AL
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEV-----ALG 265
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
+FR+M+ GV+P +V LS +++LGLLE G VH ++++ MP + +G ALV
Sbjct: 266 VFRNMVEQ--GVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSG-MPVC-MNVGAALV 321
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KCGC+ A +F MR ++V W AM G+A HG G +A+ L + G+ P V
Sbjct: 322 DMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNV 381
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + C +GLV EG F + K+ +EP ++HY C+VDLLGRAG + EA I G
Sbjct: 382 TFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEG 441
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ I PD +LW ++LS+C HG V LG VG L++L P S +V LS IYA
Sbjct: 442 MHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDP--------THSGYYVLLSGIYA 493
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQT 472
A +W +V VRK M + G S+++
Sbjct: 494 KANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 213/393 (54%), Gaps = 22/393 (5%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IR P ++ F + ++K + D+ T + L +CAR ++ +G H V GF
Sbjct: 84 IRGGMPNKALQSF-HQMAKEQVRLDEVTLLNVLVACARTGAMK---VGSLCHALVVLNGF 139
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
N + ++L+ YA + ++VF++MP R+ W +MI G C+QS + K+ A+
Sbjct: 140 EINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG-CTQSGRFKE----AV 194
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFRDM ++GVK D T+ V+S Q+G L+ G +H Y + E + + +L
Sbjct: 195 DLFRDM--QIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE--LSVKNSL 250
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPN 319
+DMYSKCG ++ A IF + +++V TWT M G A++G EA+ L M + V PN
Sbjct: 251 IDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
V F + AC H GLVE+G H F M + + P I+HY C+VDLLGRA L EA FI
Sbjct: 311 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFI 370
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P+ PD ++WRSLL AC G V L E + + QL+P+ C V LSN+
Sbjct: 371 KDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPK------RCGGH--VLLSNV 422
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
YA+ RW DV +VR M R +PG S ++
Sbjct: 423 YATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEV 455
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+T D+++ A+ + AR SL +G Q H K + V LI+ Y+S +
Sbjct: 1 MTLDNYSLNIAISAAARVPSLD---VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPA 57
Query: 162 SGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
S + V D P +S +WN +I GY K AL F M + V+ + T
Sbjct: 58 SARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNK-----ALQSFHQMAKE--QVRLDEVT 110
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
++ VL ++ G ++ G+ H + + E + +IG++LV MY+KCG ++ A +F+R
Sbjct: 111 LLNVLVACARTGAMKVGSLCHALVVLNGF--EINCYIGSSLVSMYAKCGMVEEARRVFNR 168
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E+NV+ WT+M G G+ EA+ L M+ GVK + T ++ ++C G ++ G
Sbjct: 169 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG 228
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+L G+ + + ++D+ + G + +AY G+ K D W ++
Sbjct: 229 RYLHAYCDGH-GLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLT-KRDVFTWTVMIMGFA 286
Query: 400 VHG 402
++G
Sbjct: 287 MNG 289
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/431 (34%), Positives = 237/431 (54%), Gaps = 29/431 (6%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPP----QDSVLVFAYWVSKG 100
+I +YC K P H VF+H ++ ++TLI Q+S ++ ++ G
Sbjct: 274 VIDMYC-KCGDPLEA---HRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVG 329
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
L T + A L L G+++H V K G M +V+V + LI YA+ I
Sbjct: 330 LAT----NAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSI 385
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ +F+ + WN+MI GY D +A FR + + +P T+
Sbjct: 386 KEAESIFECTSDKDIMVWNSMIVGY----NLVGDFE-SAFFTFRRIWG--AEHRPNFITV 438
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V +L + +Q+G L G +HGY+ K+ +V +G +L+DMYSKCG L+ +F +M
Sbjct: 439 VSILPICTQMGALRQGKEIHGYVTKSGLGL--NVSVGNSLIDMYSKCGFLELGEKVFKQM 496
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+NV T+ M + HG+G + + + M++ G +PN VTF SL +AC HAGL++ G
Sbjct: 497 MVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGW 556
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
L+++M + +G+EP+++HYSC+VDL+GRAG L+ AY FI +P+ PDA ++ SLL AC +
Sbjct: 557 LLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRL 616
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
H V L E + + +LQL+ + S +V LSN+YAS +RW D+ VR +K K
Sbjct: 617 HNKVELTELLAERILQLKAD--------DSGHYVLLSNLYASGKRWEDMSKVRSMIKDKG 668
Query: 461 VETEPGSSILQ 471
+E +PGSS +Q
Sbjct: 669 LEKKPGSSWIQ 679
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 149/309 (48%), Gaps = 29/309 (9%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIH--VHVTKRGFMFNVLVATTLIHFYASNKD 159
+T D++TY L +C+ SL L LGR +H +H + NV V +I +A
Sbjct: 129 VTPDNYTYPLVLKACS---SLHALQLGRWVHETMHGKTKA---NVYVQCAVIDMFAKCGS 182
Query: 160 ISSGKKVFDQMPMRSSATWNAMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
+ +++F++MP R A+W A+I NG C AL+LFR M + G+
Sbjct: 183 VEDARRMFEEMPDRDLASWTALICGTMWNGEC----------LEALLLFRKMRSE--GLM 230
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P + +L +L ++ G + ++ + E+D+++ A++DMY KCG A
Sbjct: 231 PDSVIVASILPACGRLEAVKLGMALQVCAVRSGF--ESDLYVSNAVIDMYCKCGDPLEAH 288
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+FS M +V++W+ + G + + E+ +L M + G+ NA+ TS+ A
Sbjct: 289 RVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLE 348
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
L+++G + N K G+ + S ++ + G ++EA + I D ++W S+
Sbjct: 349 LLKQGKEM-HNFVLKEGLMSDVVVGSALIVMYANCGSIKEAES-IFECTSDKDIMVWNSM 406
Query: 395 LSACNVHGD 403
+ N+ GD
Sbjct: 407 IVGYNLVGD 415
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 132/292 (45%), Gaps = 17/292 (5%)
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFM-----FNVLVATTLIHFYASNKDISSGKK 165
F + S R S L R +H + GF + A+ L++ Y + +
Sbjct: 29 FTVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVNFGSLQHAFL 88
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
F +P + WNA++ G + K A+ + ML GV P + T VL
Sbjct: 89 TFRALPHKPIIAWNAILRGLVAVGHFTK-----AIHFYHSMLQH--GVTPDNYTYPLVLK 141
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
S L L+ G VH M + +V++ A++DM++KCG +++A +F M ++++
Sbjct: 142 ACSSLHALQLGRWVHETMHGK---TKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDL 198
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+WTA+ G +G+ EA+ L MR G+ P++V S+ AC V+ G+ L
Sbjct: 199 ASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMAL-QV 257
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ G E + + ++D+ + G EA+ + + D + W +L++
Sbjct: 258 CAVRSGFESDLYVSNAVIDMYCKCGDPLEAHR-VFSHMVYSDVVSWSTLIAG 308
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/413 (34%), Positives = 219/413 (53%), Gaps = 52/413 (12%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++++L FA + G+L+ D L +C L T G+ IH ++ + N +
Sbjct: 153 KEALLQFAKMKNSGVLS-DQLILATVLSACGHIRHLRT---GKSIHSYMLVSDILINAHL 208
Query: 147 ATTLIHFYAS-------------------------------NKDISSGKKVFDQMPMRSS 175
++ LI+ YAS N+ + +FD MP +
Sbjct: 209 SSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDV 268
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+W+AMI+GY ++ + AL LF DM G++P + TM+ V+S + LG L+
Sbjct: 269 VSWSAMISGYADSNQPNE-----ALSLFNDM--QECGIRPDEVTMLSVISACANLGSLDK 321
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+H +++ + I AL+DM++KCG ++ AL IF+ M +KNV+TWT+M T
Sbjct: 322 AKWIHAFIKNNGL--NKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAF 379
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A+HG G A+ L + MR+ GV+PN VTF +L ACCHAGLV EG LF +M ++G+EP
Sbjct: 380 AMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPK 439
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+HY C+VDLLGRA ++EA N I + ++P+ +W SLL+AC +HGD+ LG K +L
Sbjct: 440 HEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKIL 499
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
QL P V LS IY ++ D + VR MK++ V E G S
Sbjct: 500 QLDPNHDGAS--------VLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLS 544
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 166/366 (45%), Gaps = 40/366 (10%)
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
TH DP +L T P+ + A GL L S AR C + +
Sbjct: 30 THLDPDRAYLATIRAAATTPRLVLAACACLRRTGLPPPGPRALPALLRSAAR-CVGAGAY 88
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
+ R H + G + + V T L+ YA+ + +KVFD M +R +W M++ YC
Sbjct: 89 V-RGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYC 147
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM--- 243
Q++ K+ AL+ F M SGV + VLS + L G +H YM
Sbjct: 148 -QTRNYKE----ALLQFAKM--KNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVS 200
Query: 244 -------------------------EKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIF 277
EK + MP D+ TA+V Y++ + A IF
Sbjct: 201 DILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIF 260
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M EK+V++W+AM +G A + NEA+ L + M++CG++P+ VT S+ +AC + G ++
Sbjct: 261 DGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLD 320
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + +K+ G+ + + ++D+ + G + A N +P K + I W S+++A
Sbjct: 321 KAKWIHAFIKNN-GLNKILHICNALIDMFAKCGGINLALNIFNEMPQK-NVITWTSMITA 378
Query: 398 CNVHGD 403
+HGD
Sbjct: 379 FAMHGD 384
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 151/454 (33%), Positives = 241/454 (53%), Gaps = 31/454 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL---- 80
+++HA ++ L+ I K ++ ++V F +L +NT+
Sbjct: 144 RKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVV---FDRMLVRDLTSWNTMMSGF 200
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG- 139
++ + + VF G + D T + L +C + L +G++IH +V + G
Sbjct: 201 VKNGEARGAFEVFGDMRRDGFVG-DRTTLLALLSACG---DVMDLKVGKEIHGYVVRNGE 256
Query: 140 --FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
+ N + ++I Y + + +S +K+F+ + ++ +WN++I+GY +K D AF
Sbjct: 257 SGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGY----EKCGD-AF 311
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LF M+V G P + T++ VL+ +Q+ L GA V Y+ K Y+ +V +G
Sbjct: 312 QALELFGRMVV--VGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVV--NVVVG 367
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
TAL+ MY+ CG L A +F M EKN+ T M TG IHG+G EAI + M GV
Sbjct: 368 TALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVT 427
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ FT++ +AC H+GLV+EG +F M + VEP HYSC+VDLLGRAG+L+EAY
Sbjct: 428 PDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYA 487
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I + +KP+ +W +LLSAC +H +V L + L +L P+ +V LS
Sbjct: 488 VIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGV--------SGYVCLS 539
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYA+ RW DVE+VR + +R+ P S ++
Sbjct: 540 NIYAAERRWEDVENVRALVAKRRLRKPPSYSFVE 573
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 185/430 (43%), Gaps = 65/430 (15%)
Query: 26 QIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
Q+HA + T ++ L +L Y P + I F N FL+N++IR
Sbjct: 43 QLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI----FDQIVLKNSFLWNSMIRG 98
Query: 84 ----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P ++ ++ + G D+FTY F L +C L +GR++H V G
Sbjct: 99 YACNNSPSRALFLYLKMLHFGQKP-DNFTYPFVLKACG---DLLLREMGRKVHALVVVGG 154
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+V V +++ Y D+ + + VFD+M +R +WN M++G+ + A A
Sbjct: 155 LEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGE-----ARGA 209
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN-DVFIGT 258
+F DM D G TT++ +LS + L+ G +HGY+ + + F+
Sbjct: 210 FEVFGDMRRD--GFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMN 267
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+++DMY C + A +F +R K+V++W ++ +G G +A+ L M G P
Sbjct: 268 SIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVP 327
Query: 319 NAVTFTSLFAAC-----------CHAGLVEEGL------------------------HLF 343
+ VT S+ AAC + +V+ G +F
Sbjct: 328 DEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVF 387
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF---IMGIPIKPDAILWRSLLSACNV 400
D M E ++ + +V G G EA + ++G + PD ++ ++LSAC+
Sbjct: 388 DEMP-----EKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSH 442
Query: 401 HGDVALGEKV 410
G V G+++
Sbjct: 443 SGLVDEGKEI 452
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 16/313 (5%)
Query: 130 QIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
Q+H HVT G + N +AT L YA + + +FDQ+ +++S WN+MI GY
Sbjct: 43 QLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACN 102
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ ++ AL L+ ML G KP + T VL L L E G VH +
Sbjct: 103 NSPSR-----ALFLYLKMLH--FGQKPDNFTYPFVLKACGDLLLREMGRKVHALV--VVG 153
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E DV++G +++ MY K G ++ A ++F RM +++ +W M +G +G+ A +
Sbjct: 154 GLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVF 213
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLL 366
MR G + T +L +AC ++ G +H + + G + + I+D+
Sbjct: 214 GDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMY 273
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG-EKVGKILL--QLQPEVTF 423
+ A G+ +K D + W SL+S GD E G++++ + EVT
Sbjct: 274 CNCESVSCARKLFEGLRVK-DVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTV 332
Query: 424 VDVACTSEDFVAL 436
+ V AL
Sbjct: 333 ISVLAACNQISAL 345
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/364 (37%), Positives = 207/364 (56%), Gaps = 20/364 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L +C+ S + L GR+IH V + G + V TL++ Y+ + ++VF
Sbjct: 431 TYTSILNACS---SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVF 487
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D+M R +NAMI GY A + AL LF D L + G+KP T + +L+
Sbjct: 488 DRMIQRDIVAYNAMIGGYA-----AHNLGKEALKLF-DRLQE-EGLKPDKVTYINMLNAC 540
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ G LE+ +H + K + +D +G ALV Y+KCG +A ++F +M ++NV++
Sbjct: 541 ANSGSLEWAREIHTLVRKGGFF--SDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVIS 598
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W A+ G A HG+G +A++L + M+ GVKP+ VTF SL +AC HAGL+EEG F +M
Sbjct: 599 WNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMS 658
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+ + P I+HY C+VDLLGRAG L+EA I +P + + +W +LL AC +HG+V +
Sbjct: 659 QDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVA 718
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
E+ + L+L + V +VALS++YA+A W +RK M+ + V EPG
Sbjct: 719 ERAAESSLKLDLDNAVV--------YVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGR 770
Query: 468 SILQ 471
S +Q
Sbjct: 771 SWIQ 774
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 170/357 (47%), Gaps = 28/357 (7%)
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
C + + +F +G++ + TY+ L + F S + L G+ +H + G
Sbjct: 205 CGRSETAFEIFQKMEQEGVVP-NRITYISVLNA---FSSPAALKWGKAVHSRILNAGHES 260
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+ V T L+ YA ++VF+++ R WN MI G + A +
Sbjct: 261 DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEE-----ASEV 315
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
+ M + GV P T V +L+ L +G +H + K + +D+ + AL+
Sbjct: 316 YNQMQRE--GVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFT--SDIGVQNALIS 371
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYS+CG + +A L+F +M K+V++WTAM G+A G G EA+ + M+ GV+PN VT
Sbjct: 372 MYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVT 431
Query: 323 FTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+TS+ AC +E G + +++ + H+ + +V++ G +++A +
Sbjct: 432 YTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG--NTLVNMYSMCGSVKDARQ-VFD 488
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTS 430
I+ D + + +++ H LG++ K+ +LQ E VT++++ AC +
Sbjct: 489 RMIQRDIVAYNAMIGGYAAHN---LGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 542
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 48/318 (15%)
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSS 175
R + L GRQ+H H+ + + + LI+ Y I ++V+ ++ R+
Sbjct: 32 RCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTV 91
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNAM+ GY K AL L R M G+ P TT++ LS G LE+
Sbjct: 92 HSWNAMVVGYIQYGYIEK-----ALKLLRQM--QQHGLAPDRTTIMSFLSSCKSPGALEW 144
Query: 236 GACVH-GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +H M+ DV + +++MY+KCG ++ A +F +M +K+V++WT G
Sbjct: 145 GREIHFQAMQAGLLF---DVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGG 201
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA-----------CCHAGLVEEGLHLF 343
A G+ A + M GV PN +T+ S+ A H+ ++ G H
Sbjct: 202 YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAG-HES 260
Query: 344 D--------NMKSKWG------------VEPHIKHYSCIVDLLGRAGHLEEA---YNFIM 380
D M +K G V + ++ ++ L G+ EEA YN +
Sbjct: 261 DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQ 320
Query: 381 GIPIKPDAILWRSLLSAC 398
+ P+ I + LL+AC
Sbjct: 321 REGVMPNKITYVILLNAC 338
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 198/336 (58%), Gaps = 20/336 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T+++ YA+N D+ + +++F++MP R+ +WN +I GY C F L F+ ML
Sbjct: 255 NTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNG-----CFFEVLRCFKRML 309
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+D V P D T+V VLS ++LG L+ G VH Y + + +++G AL+DMYSKC
Sbjct: 310 ID-GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF--KGSIYVGNALIDMYSKC 366
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++NA+ +F M K+++TW +M G+A HG G +A+ L M+ G KP+ +TF +
Sbjct: 367 GLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVL 426
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+C H GLVEEG F++M +++ + P I+HY C+VDL GRAG L+ A F+ +P++ D
Sbjct: 427 CSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEAD 486
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W +LL AC ++ ++ L E + L+ L+P+ ++V LSNIY RW
Sbjct: 487 AVIWAALLGACRIYKNIDLAELALQKLIVLEPK--------NPANYVLLSNIYGDLGRWK 538
Query: 448 DVESVRKQMKVKRVETEPGSSILQTT----THYTLD 479
DV ++ M+ + PG S+++ Y+LD
Sbjct: 539 DVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLD 574
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 106/428 (24%), Positives = 184/428 (42%), Gaps = 44/428 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L++ T + ++++ AQ+IT+ + A + T + +F HF P +
Sbjct: 32 LRSCKTVALLQKVQAQIITHGFQYNGYVAPNV---VTSWVGLKQMAHARHLFDHFPDPKV 88
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
L+N + R ++ V +F S + + FT+ L SCA+ + G +
Sbjct: 89 ELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP-NCFTFPLVLKSCAKIGAFVE---GEE 144
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
IH V K G N VATTLI Y+ + I S K+F M R+ W +MI+GY C++
Sbjct: 145 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR 204
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF- 247
A+ L D++ P ++ + VS + + + A K F
Sbjct: 205 VALARR------------LFDLA---PERDVVLWNIMVSGYIEIGDMKAA-----RKLFD 244
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
MP D +++ Y+ G ++ +F M E+NV +W + G A +G E +R
Sbjct: 245 TMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRC 304
Query: 308 LDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVD 364
M D V PN T ++ +AC G ++ G +H++ + G + I + ++D
Sbjct: 305 FKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVY---AATIGFKGSIYVGNALID 361
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG---DVALGEKVGKILLQLQPEV 421
+ + G +E A + +K D I W S++ HG D KI + +
Sbjct: 362 MYSKCGLIENAMEVFESMDLK-DLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGI 420
Query: 422 TFVDVACT 429
TF+ V C+
Sbjct: 421 TFIGVLCS 428
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 203/366 (55%), Gaps = 20/366 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T V L +C L +L LG+ I V RGF N+ + L+ Y+ +I + +K+F
Sbjct: 261 TMVSVLSACGH---LRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLF 317
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D M + WN MI GYC S + ALVLF ML + V P D T + VL
Sbjct: 318 DGMEDKDVILWNTMIGGYCHLSLYEE-----ALVLFEVMLRE--NVTPNDVTFLAVLPAC 370
Query: 228 SQLGLLEFGACVHGYMEKTFYMPEN--DVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LG L+ G VH Y++K N +V + T+++ MY+KCGC++ A +F M +++
Sbjct: 371 ASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSL 430
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+W AM +G+A++G A+ L + M + G +P+ +TF + +AC AG VE G F +
Sbjct: 431 ASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M +G+ P ++HY C++DLL R+G +EA + + ++PD +W SLL+AC +HG V
Sbjct: 491 MNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVE 550
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
GE V + L +L+PE S +V LSNIYA A RW DV +R ++ K ++ P
Sbjct: 551 FGEYVAERLFELEPE--------NSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVP 602
Query: 466 GSSILQ 471
G + ++
Sbjct: 603 GCTSIE 608
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 218/459 (47%), Gaps = 48/459 (10%)
Query: 24 IKQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+KQIH+ +I + L + L+AQ LI+ + S + F H PPN+F++NTLI
Sbjct: 41 LKQIHSLIIKSGLHNT-LFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLI 99
Query: 82 RC---TP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R TP P S+ +F+ + GL + T+ SCA+ + +Q+H H K
Sbjct: 100 RAHSLTPTPTSSLHLFSQMLHSGLYP-NSHTFPSLFKSCAKSKATHE---AKQLHAHALK 155
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------- 190
+ V T+LIH Y+ ++ + VFD+ +R + ++ A+I GY S+
Sbjct: 156 LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRL 215
Query: 191 ----KAKD-CAFNALVL-------FRDML-----VDVSGVKPTDTTMVCVLSVSSQLGLL 233
AKD ++NA++ F + L + + V P +TMV VLS L L
Sbjct: 216 FDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSL 275
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
E G + ++ + ++ + ALVDMYSKCG + A +F M +K+V+ W M
Sbjct: 276 ELGKWIGSWVRDRGF--GKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIG 333
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLF--DNMKSK 349
G EA+ L + M V PN VTF ++ AC G ++ G +H + N+K
Sbjct: 334 GYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGT 393
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALG 407
V ++ ++ I+ + + G +E A + + A W +++S A N H + ALG
Sbjct: 394 GNVN-NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERALG 451
Query: 408 EKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIYASA 443
I QP ++TFV V ACT FV L + Y S+
Sbjct: 452 LFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSS 490
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 52/355 (14%)
Query: 66 FTHF----DPPNLFL-----FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
F HF DPP L N L +C + + + GL +FA
Sbjct: 9 FVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGL-----HNTLFAQSKL 63
Query: 117 ARFCSLS-------TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
FC+LS L L IH N+ + TLI ++ +S +F Q
Sbjct: 64 IEFCALSPSRDLSYALSLFHSIHHQPP------NIFIWNTLIRAHSLTPTPTSSLHLFSQ 117
Query: 170 MPMR----SSATWNAMINGYCSQSK---KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
M +S T+ ++ C++SK +AK +AL L + V
Sbjct: 118 MLHSGLYPNSHTFPSLFKS-CAKSKATHEAKQLHAHALKLALHLHPHVH---------TS 167
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
++ + SQ+G L V + + T D TAL+ Y G +D+A +F +
Sbjct: 168 LIHMYSQVGELRHARLV--FDKSTL----RDAVSFTALITGYVSEGHVDDARRLFDEIPA 221
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+V++W AM G G+ EA+ M++ V PN T S+ +AC H +E G +
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWI 281
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++ + G +++ + +VD+ + G + A G+ K D ILW +++
Sbjct: 282 GSWVRDR-GFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDK-DVILWNTMIGG 334
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/378 (37%), Positives = 214/378 (56%), Gaps = 24/378 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T V L +CA L L LG+ IH + K G +V + LI Y ++ + + +F
Sbjct: 231 TLVSVLPACA---GLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLF 287
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D M +++ +WNAMI Y + + NA+ LFR M V TMV V+S
Sbjct: 288 DGMVVQNLVSWNAMIAAY-----EQNNAGANAVKLFRRM--QAEKVDFDYITMVSVISAC 340
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LG L G +H +++ E +V I AL+DMY+KCG +D A +F R+ ++V++
Sbjct: 341 ASLGALNTGRWMHELVKRKGL--EINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS 398
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WT+M A HG G +A++L M+D GVKPN+ TF ++F AC H+GLVEEG F++M
Sbjct: 399 WTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMM 458
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+ + P ++H +C+VDLLGRAG L EAY FI +P++PD +W +LL +C +H ++ L
Sbjct: 459 RDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELA 518
Query: 408 EKVGKILLQLQPE-VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
E V + L L P+ VTF +V +SNIYA A RW D +RK M+ + ++ PG
Sbjct: 519 ELVAEKLFLLDPQTVTF---------YVLMSNIYAEAGRWEDAARLRKLMEERELKKIPG 569
Query: 467 SSILQTTT--HYTLDGFR 482
S+++ H L G R
Sbjct: 570 HSLVEVNRRFHTFLSGSR 587
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 33/334 (9%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF---YASNKDISSGK 164
++ + L C+ LS +IH V G N+L++T LI A D + +
Sbjct: 31 SFNYLLNCCSSLPDLS------RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYA--R 82
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+FDQMP R WN +I GY A C AL L+ +M +G+ P + T V+
Sbjct: 83 KMFDQMPKRDVFLWNTLIRGYAD----AGPCE-EALALYSNM--HGAGLFPDNYTFPFVV 135
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L L G VH + K + ++DVF+ ++LV MYS+ G L+F M +N
Sbjct: 136 RSCAVLSALREGKEVHCNIVKHGF--DSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRN 193
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+++WTA+ G + E + + M G +PNAVT S+ AC + G L
Sbjct: 194 IVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG-KLIH 252
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
K GV+P + + ++ L G+ G++E A + G+ ++ + + W ++++A +
Sbjct: 253 GYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQ-NLVSWNAMIAAYEQNN-- 309
Query: 405 ALGEKVGKILLQLQPE------VTFVDV--ACTS 430
G K+ ++Q E +T V V AC S
Sbjct: 310 -AGANAVKLFRRMQAEKVDFDYITMVSVISACAS 342
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 17/249 (6%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
FD T V + +CA +L+T GR +H V ++G NV + LI YA +I
Sbjct: 328 FDYITMVSVISACASLGALNT---GRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLA 384
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
++VF+++P RS +W +MI G C+ +D AL LF M GVKP T V
Sbjct: 385 REVFERLPCRSVVSWTSMI-GACASHGHGED----ALKLFSRM--KDEGVKPNSFTFAAV 437
Query: 224 LSVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR- 281
+ GL+E G M + + MP V +VD+ + G L A +M
Sbjct: 438 FTACRHSGLVEEGRKHFESMMRDYSIMP--GVEHCACMVDLLGRAGSLMEAYEFIDKMPV 495
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGLVEEGL 340
E +V W A+ IH N + L + + + P VTF L + AG E+
Sbjct: 496 EPDVSVWGALLGSCRIH--SNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAA 553
Query: 341 HLFDNMKSK 349
L M+ +
Sbjct: 554 RLRKLMEER 562
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 161/456 (35%), Positives = 238/456 (52%), Gaps = 35/456 (7%)
Query: 24 IKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQ HA+L+ T +S PL +L T + + H + T P+ FLF++L R
Sbjct: 23 LKQAHARLVVTGHGRSLPLITKLA----TLAVAAGAAPYAHLLATSHPAPDSFLFSSLTR 78
Query: 83 CTPPQDSVLVFAYWVSKGLLT----FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
T + V A +GLL+ F FT+ +CA LS L G IH H
Sbjct: 79 -TAAHHGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACA---DLSALRTGAAIHAHSILL 134
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF + V T L+ Y+ + +K+FD + RS WNAMI+GY + A
Sbjct: 135 GFGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGY-----EQNGLAER 189
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND--VFI 256
+ ++++M + P T V LS +Q G L+ G V E+ D VF+
Sbjct: 190 GIGVYKEM--QAAKAVPDSMTFVATLSACAQAGALDLGREV----ERRVVSERMDISVFL 243
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
G+ALV+MY++CG +D A F ++E+NV+TWT+M G +HG G EAI+L MR G
Sbjct: 244 GSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGP 303
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
PN VTF ++ +AC HAGLV EG F MK +G+ P ++HY +VD+ GRAG L+EA
Sbjct: 304 PPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAM 363
Query: 377 NFIMG-IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
FI +P +P +W ++L AC +H + LG +V + L+ L+PE V
Sbjct: 364 QFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIALEPE--------NPSYHVL 415
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA + + VE VR M +R++ + G S+++
Sbjct: 416 LSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIE 451
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 200/343 (58%), Gaps = 18/343 (5%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
IH V+K G VA T+I YA D+ + +K+FD M R +WN MI Y
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMMD-RDVVSWNTMIALYAQN 272
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ AL L+ ML+ V+ T+ VL + G ++ G +H + +
Sbjct: 273 G-----LSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGL 327
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
E++V++GT++VDMYSKCG ++ A F +++ KN+L+W+AM G +HG G EA+ +
Sbjct: 328 --EDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVF 385
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
MR G+KPN +TF ++ AAC HAGL+ EG + ++ MK+++G+EP ++HY C+VDLLGR
Sbjct: 386 TDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGR 445
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EAY I + +KPDA LW +LLSAC ++ +V L + + L +L A
Sbjct: 446 AGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELD--------AT 497
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V LSNIYA A W +VE +R +K + +E PG S ++
Sbjct: 498 NSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVE 540
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 12/185 (6%)
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+CA ++ T G++IH V + G NV V T+++ Y+ + K F ++ ++
Sbjct: 305 ACAHAGAIQT---GKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKN 361
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+W+AMI GY + AL +F DM SG+KP T + VL+ S GLL
Sbjct: 362 ILSWSAMIAGYGMHGYGQE-----ALHVFTDM--RKSGLKPNYITFITVLAACSHAGLLS 414
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMAT 293
G + M+ F + G +VD+ + GCLD A + M+ K + W A+ +
Sbjct: 415 EGRYWYNTMKTEFGIEPGVEHYG-CMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLS 473
Query: 294 GMAIH 298
I+
Sbjct: 474 ACRIY 478
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 210/385 (54%), Gaps = 32/385 (8%)
Query: 99 KGLLTFDDF----------TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT 148
+ LL F+D T V L +CA+ +L LG + + RG N+ +
Sbjct: 244 EALLLFEDMRKANVPPNESTIVSVLSACAQSNALD---LGNSMRSWIEDRGLCSNLKLVN 300
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDML 207
LI Y+ D+ + +++FD M R +WN MI GY C++ AL LFR+ML
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHM------CSYKEALALFREML 354
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
SGV+PT+ T + +L + LG ++ G +H Y+ K F + T+L+D+Y+KC
Sbjct: 355 A--SGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS--TSLSTSLIDLYAKC 410
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + A +F M+ K++ +W AM G+A+HG+ ++A L M G++PN +TF +
Sbjct: 411 GNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGIL 470
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+AC HAGLV+ G F +M + + P +HY C++DLLGRAG EEA + + + +KPD
Sbjct: 471 SACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPD 530
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W SLL AC HG V LGE V + L +L+P+ +V LSNIYA A +W
Sbjct: 531 GAIWGSLLGACRDHGRVELGELVAERLFELEPD--------NPGAYVLLSNIYAGAGKWD 582
Query: 448 DVESVRKQMKVKRVETEPGSSILQT 472
DV +R ++ + ++ PG + ++
Sbjct: 583 DVARIRTRLNDRGMKKVPGCTTIEV 607
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 243/533 (45%), Gaps = 108/533 (20%)
Query: 4 LPGHRCFALL-KLKAITTPSHIKQIHAQLITNALKSPPLYA--QLIQLYCTKKASPQSTK 60
L H LL K ++I T KQIHA +I L + L+A +LI+ ++ S
Sbjct: 27 LQEHPSLKLLSKCQSIRT---FKQIHAHIIKTGLHNT-LFALSKLIEFSAVSRSGDISYA 82
Query: 61 IVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
I +F + PNLF++N++IR P +++ F + G+ + +T+ F L SC
Sbjct: 83 IS--LFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEP-NSYTFPFLLKSC 139
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ------- 169
A+ S G+QIH HV K GF+ +V + T+LI+ YA + ++++ + VFDQ
Sbjct: 140 AKLASAHE---GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAI 196
Query: 170 ------------------------MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
MP++ +WNAMI GY +Q ++K+ AL+LF D
Sbjct: 197 SFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGY-AQMGRSKE----ALLLFED 251
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M + V P ++T+V VLS +Q L+ G + ++E +++ + AL+DMYS
Sbjct: 252 M--RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLC--SNLKLVNALIDMYS 307
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG L A +F M E++V++W M G EA+ L M GV+P +TF S
Sbjct: 308 KCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLS 367
Query: 326 LFAACCHAGLVEEG-----------------------------------LHLFDNMKSK- 349
+ +C H G ++ G +FD MK K
Sbjct: 368 ILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKS 427
Query: 350 ---WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
W C + + G+A E ++ + I+P+ I + +LSAC G V L
Sbjct: 428 LASWNA------MICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDL 481
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
G++ ++Q ++ S+ + + ++ A + + ES+ + M+VK
Sbjct: 482 GQQFFSSMVQ------DYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVK 528
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 201/364 (55%), Gaps = 19/364 (5%)
Query: 110 VFALGSCAR-FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
+FA+ S F L G+ +H + + G + V L+ Y ++ K +FD
Sbjct: 398 IFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFD 457
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ + +WN +I GY + A A LF +ML+ + +P TM C+L ++
Sbjct: 458 GVVSKDMISWNTLIGGYSRN-----NLANEAFSLFTEMLLQL---RPNAVTMTCILPAAA 509
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L LE G +H Y + Y+ D F+ AL+DMY KCG L A +F R+ KN+++W
Sbjct: 510 SLSSLERGREMHAYALRRGYL--EDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISW 567
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T M G +HG+G +AI L + MR G+ P+A +F+++ AC H+GL +EG FD M+
Sbjct: 568 TIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRK 627
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ +EP +KHY+C+VDLL G+L+EAY FI +PI+PD+ +W SLL C +H +V L E
Sbjct: 628 EHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAE 687
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+V + + +L+PE T +V L+NIYA AERW V ++ ++ + + G S
Sbjct: 688 EVAERVFELEPENTGY--------YVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCS 739
Query: 469 ILQT 472
++
Sbjct: 740 WIEA 743
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 176/410 (42%), Gaps = 23/410 (5%)
Query: 54 ASPQSTKIVHFVFTHFDPPNLFLFNTLIR-CTPP---QDSVLVFAYWVSKGLLTFDDFTY 109
A TK VF ++ +N++I CT ++ +F +G D T
Sbjct: 242 AKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE-ELDSATL 300
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ L +CA L L+LGR +H + K GF+ +A L+ Y++ D S K+F
Sbjct: 301 LSVLPACA---ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRN 357
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
M ++ +W AMI Y K LF++M + G +P + L +
Sbjct: 358 MVQKNVVSWTAMITSYTRAGLYDKVAG-----LFQEM--GLEGTRPDIFAITSALHAFAG 410
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LL+ G VHGY + E + + AL++MY KCG ++ A LIF + K++++W
Sbjct: 411 NELLKHGKSVHGYAIRNGM--EKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWN 468
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+ G + + NEA L M ++PNAVT T + A +E G + +
Sbjct: 469 TLIGGYSRNNLANEAFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRR 527
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+E + ++D+ + G L A + K + I W +++ +HG G
Sbjct: 528 GYLEDDFV-ANALIDMYVKCGALLLARRLFDRLSNK-NLISWTIMVAGYGMHGR---GRD 582
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+ Q++ D A S A S+ E W +++RK+ K++
Sbjct: 583 AIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIE 632
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 18/231 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK----RGFMFNVLVATTLIHFYASNKDI 160
DD +Y L C+ SL G++ H V R M NVL L+ Y D+
Sbjct: 90 DDRSYGAVLQLCSEVRSLEG---GKRAHFLVRASSLGRDGMDNVL-GQKLVLMYLKCGDL 145
Query: 161 SSGKKVFDQMPMRSSA-TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+ ++VFD+MP S W A+++GY KA D ++LFR M GV+P T
Sbjct: 146 ENARRVFDEMPQVSDVRVWTALMSGYA----KAGDLR-EGVLLFRKM--HCCGVRPDAYT 198
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ CVL + LG +E G VHG +EK + + +G AL+ Y+K +A+L+F
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQ--CAVGNALMAFYAKSNRTKDAILVFDG 256
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
M ++V++W +M +G +G ++AI L M G + ++ T S+ AC
Sbjct: 257 MPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPAC 307
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 19/367 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ F+ +T V L C S L GR IH K G N + T+L Y + D
Sbjct: 461 IKFNSYTIVSLLAFCK---DGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDER 517
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+ +F + P R +WN++I+ Y K AL+LF M +S ++P T++
Sbjct: 518 AATNMFTRCPQRDLVSWNSLISSYIKNDNAGK-----ALLLFNHM---ISELEPNSVTII 569
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+L+ +QL L G C+H Y + E D + A + MY++CG L A IF ++
Sbjct: 570 NILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQ 629
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+++++W AM TG +HG+G +A M D G KPN V+F S+ +AC H+GL GL
Sbjct: 630 TRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQ 689
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF +M +G+ P + HY C+VDLLGR GH EA FI +PI+PDA +WR+LLS+C +
Sbjct: 690 LFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIK 749
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ L E + L++L+P +F+ LSNIYA+A W +V +RK ++ + +
Sbjct: 750 SNNKLLETIFGKLVELEPS--------NPGNFILLSNIYAAAGLWSEVVQIRKWLRERGL 801
Query: 462 ETEPGSS 468
PG+S
Sbjct: 802 GKPPGTS 808
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 145/298 (48%), Gaps = 18/298 (6%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+T D T L +C R ++ G +IH + + +V V T L+ FY ++
Sbjct: 56 ITPDSATMPLVLKACGRLNAIGN---GVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVA 112
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
KVF +MP R +WNA+I+GY C A++LF +M +G+ P T+V
Sbjct: 113 EASKVFVEMPERDLVSWNALISGYVGCL-----CYKEAVLLFVEM--KKAGLTPNSRTVV 165
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL--LIFSR 279
+L ++ L G +HGY + + + D ++GTALV Y + D L +FS
Sbjct: 166 ALLLACGEMLELRLGQEIHGYCLRN-GLFDMDAYVGTALVGFYMR---FDAVLSHRVFSL 221
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M +N+++W A+ TG G +A++L SM G+K +AVT + AC G + G
Sbjct: 222 MLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLG 281
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ L + K+ + + + ++++ G LE ++ +P DA LW S++S+
Sbjct: 282 MQL-HQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISS 337
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 154/341 (45%), Gaps = 35/341 (10%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ FD T + + +CA + L LG Q+H K + ++ + L++ Y+ N +
Sbjct: 258 IKFDAVTMLVVIQACAEY---GCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLE 314
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
S +F+ +P +A WN+MI+ Y A+ A+ LF M ++ +K T+
Sbjct: 315 SSWALFNAVPTSDAALWNSMISSYIGFGFHAE-----AIALFIKMRLE--RIKEDVRTIA 367
Query: 222 CVLSVSSQLGLLE-FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
+LS+ + L +G +H + K+ E D ++G AL+ MY K + A +F +M
Sbjct: 368 IMLSLCNDLNDGSIWGRGLHAHAMKSGI--ELDAYLGNALLSMYVKHNQITAAQYVFEKM 425
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG--LVEE 338
R +V++W M + A +A L M + +K N+ T SL A C +
Sbjct: 426 RGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGR 485
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+H F K G+E + + + ++ G A N P + D + W SL+S+
Sbjct: 486 SIHGF---AIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSY 541
Query: 399 NVHGDVALGEKVGKILL-------QLQPE-VTFVDV--ACT 429
+ D A GK LL +L+P VT +++ +CT
Sbjct: 542 -IKNDNA-----GKALLLFNHMISELEPNSVTIINILTSCT 576
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
S WN++I + +K D A +L ++ G+ P TM VL +L +
Sbjct: 25 SKDWNSIIKHH---TKLKNDHA----ILSTYTQMESLGITPDSATMPLVLKACGRLNAIG 77
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +H ++ + NDV +GTALVD Y KCG + A +F M E+++++W A+ +G
Sbjct: 78 NGVRIHSFIRGLDLI--NDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISG 135
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
EA+ L M+ G+ PN+ T +L AC
Sbjct: 136 YVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLAC 171
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/336 (36%), Positives = 198/336 (58%), Gaps = 20/336 (5%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T+++ YA+N D+ + +++F++MP R+ +WN +I GY C F L F+ ML
Sbjct: 297 NTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNG-----CFFEVLRCFKRML 351
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+D V P D T+V VLS ++LG L+ G VH Y + + +++G AL+DMYSKC
Sbjct: 352 ID-GLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF--KGSIYVGNALIDMYSKC 408
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++NA+ +F M K+++TW +M G+A HG G +A+ L M+ G KP+ +TF +
Sbjct: 409 GLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVL 468
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+C H GLVEEG F++M +++ + P I+HY C+VDL GRAG L+ A F+ +P++ D
Sbjct: 469 CSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEAD 528
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W +LL AC ++ ++ L E + L+ L+P+ ++V LSNIY RW
Sbjct: 529 AVIWAALLGACRIYKNIDLAELALQKLIVLEPK--------NPANYVLLSNIYGDLGRWK 580
Query: 448 DVESVRKQMKVKRVETEPGSSILQTT----THYTLD 479
DV ++ M+ + PG S+++ Y+LD
Sbjct: 581 DVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLD 616
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 106/428 (24%), Positives = 184/428 (42%), Gaps = 44/428 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L++ T + ++++ AQ+IT+ + A + T + +F HF P +
Sbjct: 74 LRSCKTVALLQKVQAQIITHGFQYNGYVAPNV---VTSWVGLKQMAHARHLFDHFPDPKV 130
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
L+N + R ++ V +F S + + FT+ L SCA+ + G +
Sbjct: 131 ELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP-NCFTFPLVLKSCAKIGAFVE---GEE 186
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
IH V K G N VATTLI Y+ + I S K+F M R+ W +MI+GY C++
Sbjct: 187 IHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR 246
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF- 247
A+ L D++ P ++ + VS + + + A K F
Sbjct: 247 VALARR------------LFDLA---PERDVVLWNIMVSGYIEIGDMKAA-----RKLFD 286
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
MP D +++ Y+ G ++ +F M E+NV +W + G A +G E +R
Sbjct: 287 TMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRC 346
Query: 308 LDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVD 364
M D V PN T ++ +AC G ++ G +H++ + G + I + ++D
Sbjct: 347 FKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVY---AATIGFKGSIYVGNALID 403
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG---DVALGEKVGKILLQLQPEV 421
+ + G +E A + +K D I W S++ HG D KI + +
Sbjct: 404 MYSKCGLIENAMEVFESMDLK-DLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGI 462
Query: 422 TFVDVACT 429
TF+ V C+
Sbjct: 463 TFIGVLCS 470
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/498 (31%), Positives = 239/498 (47%), Gaps = 80/498 (16%)
Query: 48 LYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLT 103
L+ + A + + VF P+ F++NTLIR P+D+V ++ + +G
Sbjct: 17 LFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGG 76
Query: 104 F---DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---- 156
D T+ F L +C + T G Q+H HV K G + V LI +AS
Sbjct: 77 GVRPDKLTFPFVLRACTAMGAGDT---GVQVHAHVVKAGCESDAFVKNALIGMHASCGNL 133
Query: 157 ---------------------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
DI + + +FD+ P++ +WN MI Y +
Sbjct: 134 GIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRG 193
Query: 190 KKA-----------KDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCV 223
A +D +AL LF M G KP TM+ +
Sbjct: 194 DMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM--QRMGEKPDIVTMLSL 251
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS + G L+ G +H + F V +G AL+DMY+KCG + +A +F MR+K
Sbjct: 252 LSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDK 311
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V TW ++ G+A+HG E+I + + M V+P+ +TF ++ AC H G+V++G F
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ M+ K+ VEP+IKHY CIVD+LGRAG L+EA+ FI + +P++++WR+LLSAC VHG+
Sbjct: 372 NLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGE 431
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ L + + LL+ + + S D+V LSNIYAS W E +RK M V
Sbjct: 432 IELAKHANRQLLKARND--------ESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
Query: 464 EPGSSILQTTTHYTLDGF 481
E S L H L GF
Sbjct: 484 EADSERLH---HRLLFGF 498
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 256/492 (52%), Gaps = 61/492 (12%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF---VFTHFDPP 72
+A T +K IHA L L L +++ SP +H+ +F+ P
Sbjct: 3 EACLTMQALKLIHALAFRANLHHHALV--LAKIFRFAAVSPNGC--LHYADRLFSQIHQP 58
Query: 73 NLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARF-CSLSTLWL 127
N F +NTLIR + P SV +F + + + D FT+ F L +R L +
Sbjct: 59 NTFFYNTLIRGYSKSSSPSQSVQLFNQ-MRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVA 117
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNK----------------------------- 158
+IH V K GF F++ V LIH YA+
Sbjct: 118 SDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVR 177
Query: 159 --DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
++ ++VF +MP R +W M++GY +Q+K++++ AL LFR+M DV GV+P
Sbjct: 178 AGELELARQVFYEMPERDVVSWTVMVSGY-AQAKRSRE----ALELFREMR-DV-GVRPD 230
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
+ MV V+S + LG LE G VH Y+++ + V + AL+DMY+KCGC+D A +
Sbjct: 231 EVAMVSVISACTSLGDLETGFEVHRYIDENGFGWM--VSLCNALIDMYAKCGCMDLAWQV 288
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F+ M K+++TW +M + A HG +A R+ M G++P+ VTF +L A H G V
Sbjct: 289 FNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWV 348
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
++G LF++M+ +GVE ++HY C+VD+LGRAG LEEAY I + + + ++W +LL+
Sbjct: 349 DDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLA 408
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC ++GDV +GE+V K L++L+P+ ++ L +IY +A R + +R+ M
Sbjct: 409 ACRIYGDVEMGERVLKKLIELKPD--------EGGYYILLRDIYVAAGRRAEAIELRRAM 460
Query: 457 KVKRVETEPGSS 468
V + G S
Sbjct: 461 DVNGAKKTLGCS 472
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 212/367 (57%), Gaps = 25/367 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+V LG+C + L L LG+ IH V K + ++V ++ Y ++ +K+F
Sbjct: 209 TFVSILGACGK---LGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMF 265
Query: 168 DQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
D+MP + +W +MI G C +++ D LF M SG +P + VLS
Sbjct: 266 DEMPEKDIISWTSMIGGLVQCQSPRESLD-------LFSQM--QASGFEPDGVILTSVLS 316
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LGLL+ G VH Y++ + + DV IGT LVDMY+KCGC+D A IF+ M KN+
Sbjct: 317 ACASLGLLDCGRWVHEYID--CHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNI 374
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
TW A G+AI+G G EA++ + + + G +PN VTF ++F ACCH GLV+EG F+
Sbjct: 375 RTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNE 434
Query: 346 MKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M S + + P ++HY C+VDLL RAG + EA I +P+ PD + +LLS+ N +G+V
Sbjct: 435 MTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLSSRNTYGNV 494
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+++ K L P V F D S +V LSN+YA+ ++W +V SVR+ MK K +
Sbjct: 495 GFTQEMLKSL----PNVEFQD----SGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKA 546
Query: 465 PGSSILQ 471
PGSSI++
Sbjct: 547 PGSSIIR 553
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 203/430 (47%), Gaps = 50/430 (11%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI--VHF---VFTHFD------PPN 73
KQIHA L+T+AL + L TK A+ I VH+ FD P N
Sbjct: 26 KQIHAHLLTSALVTNDLVV-------TKAANFLGKHITDVHYPCNFLKQFDWSLSSFPCN 78
Query: 74 LFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
L L + P ++L++ + V G + D +T+ L SCA+F + + RQ H
Sbjct: 79 L-LISGYASGQLPWLAILIYRWTVRNGFVP-DVYTFPAVLKSCAKFSGIGEV---RQFHS 133
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
K G ++ V TL+H Y+ D KVF+ M +R +W +I+GY K
Sbjct: 134 VSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGY------VK 187
Query: 194 DCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
FN A+ LF M V+P T V +L +LG L G +HG + K Y E
Sbjct: 188 TGLFNEAISLFLRM-----NVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEE- 241
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ + A++DMY KC + +A +F M EK++++WT+M G+ E++ L M+
Sbjct: 242 -LVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQ 300
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEG--LHLF-DNMKSKWGVEPHIKHYSCIVDLLGRA 369
G +P+ V TS+ +AC GL++ G +H + D + KW V HI + +VD+ +
Sbjct: 301 ASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDV--HIG--TTLVDMYAKC 356
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVDV 426
G ++ A G+P K + W + + A N +G AL + + +P EVTF+ V
Sbjct: 357 GCIDMAQRIFNGMPSK-NIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAV 415
Query: 427 --ACTSEDFV 434
AC V
Sbjct: 416 FTACCHNGLV 425
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 225/412 (54%), Gaps = 23/412 (5%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
+F +L ++N LI + V +Y + + + T V L C+ S
Sbjct: 136 IFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSSNVKPNGVTAVSILSVCS---S 192
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L G+ +H +VTK +V V LI Y+ I +VF MPMR+ +W ++
Sbjct: 193 LRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDAVQVFQLMPMRNVVSWTSL 252
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
INGY +C AL F+ M + ++P + T++ V+ + S+L E G +
Sbjct: 253 INGYSDN-----NCPNEALGFFKQM--EAENIRPDEITVLGVVCMCSKLRSFELGEWISQ 305
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y+ KT + E+ I L+DM++KCG + A IF M EK +++WT M G+A++G G
Sbjct: 306 YVVKTGLVKESPA-IANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIMIQGLAMYGHG 364
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
A+ M+ G KP+++ F SL +AC HAGLV+EG F +M++ + + P ++HY C
Sbjct: 365 LSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHYGC 424
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VD+L RAG ++EA+ F+ +PIKPD I+WR+LL AC G+++L +V L +L P+
Sbjct: 425 MVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLCELGPK- 483
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV-ETEPGSSILQT 472
SED+V LSN++AS W +V VRK+M + V + +PG S ++
Sbjct: 484 -------KSEDYVLLSNLFASNAEWDNVXEVRKEMGDRGVTKQDPGCSFIEA 528
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 194/421 (46%), Gaps = 63/421 (14%)
Query: 31 LITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----TP 85
+ITN L +P L ++L+ + + P +T + + D + + +NT+IR
Sbjct: 1 MITNGHLHNPTLASKLVVSFASITL-PGTTSVARRIADQIDGLDTYTWNTIIRGYLEGND 59
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P++++L++ + KGL D +T VF + +C + G QIH + K GF F V+
Sbjct: 60 PEEAILIYNHVRKKGL-KVDTYTLVFVIKACGL---RPVILEGEQIHGQIFKLGFEFEVI 115
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
+ T L+ Y + +++FD+MP R WNA+I Y +C + + D
Sbjct: 116 IQTALLSMYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAH-----GNCPYKVREVSYD 170
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M+ S VKP T V +LSV S L L G VHGY+ K E DVF+ AL+D+YS
Sbjct: 171 MV--SSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLI--EXDVFVHNALIDVYS 226
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG + +A+ +F M +NV++WT++ G + + NEA+ M ++P+ +T
Sbjct: 227 KCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLG 286
Query: 326 LFAAC----------------CHAGLVEE--------------------GLHLFDNMKSK 349
+ C GLV+E +FD M+ K
Sbjct: 287 VVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEK 346
Query: 350 WGVEPHIKHYSCIVDLLGRAGH-LEEAYNF--IMGIPIKPDAILWRSLLSACNVHGDVAL 406
I ++ ++ L GH L F + KPD++++ SLLSAC+ G V
Sbjct: 347 -----TIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDE 401
Query: 407 G 407
G
Sbjct: 402 G 402
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 202/366 (55%), Gaps = 20/366 (5%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
+FT+V + +C+ L W G+Q+H ++ K GF + V T L+ YA I +K
Sbjct: 310 EFTFVGVINACS---DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARK 366
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
FD + W +MI GY + +AL L+ M ++ G+ P + TM VL
Sbjct: 367 GFDYLQEPDIVLWTSMIGGYVQNGENE-----DALSLYGRM--EMEGILPNELTMASVLK 419
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
S L LE G +H K + E V IG+AL MY+KCGCL + L+F RM ++V
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGFGLE--VPIGSALSTMYAKCGCLKDGTLVFRRMPARDV 477
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++W AM +G++ +G G EA+ L + M+ G KP+ VTF ++ +AC H GLVE G F
Sbjct: 478 ISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRM 537
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M ++G++P ++HY+C+VD+L RAG L+EA F I LWR +L AC + +
Sbjct: 538 MFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYE 597
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
LG G+ L++L + S +V LS+IY++ RW DVE VR+ MK++ V EP
Sbjct: 598 LGAYAGEKLMELGSQ--------ESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEP 649
Query: 466 GSSILQ 471
G S ++
Sbjct: 650 GCSWIE 655
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 189/413 (45%), Gaps = 33/413 (7%)
Query: 2 LSLPGHRCF--ALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST 59
++LP +R F ALL+ + K +HAQ+I ++ + L+ LY A Q
Sbjct: 1 MTLPSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLY----AKCQRL 56
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRCTP---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
+ FVF ++ +N +I P S V + + FA
Sbjct: 57 REAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFA---- 112
Query: 117 ARFCSLSTL---WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
F + STL GR H K +V V ++L++ Y +KVFD MP R
Sbjct: 113 GVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPER 172
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+S +W MI+GY SQ A+ AL LFR M + G + VLS + L+
Sbjct: 173 NSVSWATMISGYASQKLAAE-----ALGLFRLMRREEEG--ENEFVFTSVLSALTLPELV 225
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
G +H K + + V +G ALV MY+KCG LD+AL F +KN +TW+AM T
Sbjct: 226 NNGKQIHCIAVKNGLL--SIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMIT 283
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G A G ++A++L SM G++P+ TF + AC G EG + D + K G E
Sbjct: 284 GYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLL-KLGFE 342
Query: 354 PHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGD 403
I + +VD+ + + +A ++++ +PD +LW S++ +G+
Sbjct: 343 SQIYVMTALVDMYAKCSSIVDARKGFDYLQ----EPDIVLWTSMIGGYVQNGE 391
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 43/331 (12%)
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
+L G+ +H + K V +A +L++ YA + + K VF+++ + +WN +IN
Sbjct: 21 SLQKGKALHAQIIKSSSSC-VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY S+ + + + LF+ M + P T V + +S L G H
Sbjct: 80 GY---SQHGPSGSSHVMELFQRMRAE--NTAPNAHTFAGVFTAASTLVDAAGGRLAHAVA 134
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
K DVF+G++L++MY K G A +F M E+N ++W M +G A E
Sbjct: 135 IKMDSC--RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAE 192
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A+ L MR N FTS+ +A LV G + + K G+ + + +V
Sbjct: 193 ALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIH-CIAVKNGLLSIVSVGNALV 251
Query: 364 DLLGRAGHLEEAYN---------------FIMGIP-------------------IKPDAI 389
+ + G L++A I G I+P
Sbjct: 252 TMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEF 311
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+ +++AC+ G G++V LL+L E
Sbjct: 312 TFVGVINACSDLGAAWEGKQVHDYLLKLGFE 342
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 204/355 (57%), Gaps = 24/355 (6%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R++ + R MF T++ YA+N ++ + + +F++MP R+ +WNA+I GY
Sbjct: 316 RKLFXEMPNRDVMF----WNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHN 371
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
F L F+ ML + S V P D T+V VLS ++LG L+ G VH Y E +
Sbjct: 372 G-----LFFEVLGSFKRMLSE-SDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL 425
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ +V++G AL+DMY+KCG ++NA+ +F M K++++W + G+A+H +G +A+ L
Sbjct: 426 --KGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLF 483
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M++ G KP+ +TF + AC H GLVE+G F +M + + P I+HY C+VD+L R
Sbjct: 484 FQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLAR 543
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG LE+A F+ +P++ D ++W LL AC ++ +V L E + L++L+P+
Sbjct: 544 AGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK-------- 595
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT----THYTLD 479
++V LSNIY A RW DV ++ M+ + PG S+++ Y+LD
Sbjct: 596 NPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLD 650
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 201/442 (45%), Gaps = 47/442 (10%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTK 60
L L RC +++ T + QI AQ+I N + + + +L+ + T K + +
Sbjct: 96 LRLTALRCLRE-NMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQ 154
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSV--LVFAYWVSKGL-LTFDDFTYVFALGSCA 117
+ F PN+ L+N++ R +S +VF ++ KG+ + + FT+ L SC
Sbjct: 155 L----FDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCG 210
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ ++ L G Q+H + K GF N V TTLI Y++ + K+F +M R+
Sbjct: 211 K---INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 267
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
W +MINGY +A ++ L D++ P ++ + VS G +E G
Sbjct: 268 WTSMINGYI----------LSADLVSARRLFDLA---PERDVVLWNIMVS---GYIEGGD 311
Query: 238 CVHGYMEKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
V K F MP DV ++ Y+ G ++ +F M E+N+ +W A+ G A
Sbjct: 312 MVEA--RKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYA 369
Query: 297 IHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVE 353
+G E + M + V PN T ++ +AC G ++ G +H++ G++
Sbjct: 370 HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESS---GLK 426
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
++ + ++D+ + G +E A + G+ K D I W +L+ +H + G +
Sbjct: 427 GNVYVGNALMDMYAKCGIIENAISVFRGMDTK-DLISWNTLIGGLAMH---SRGADALNL 482
Query: 414 LLQL-----QPE-VTFVDVACT 429
Q+ +P+ +TF+ + C
Sbjct: 483 FFQMKNAGQKPDGITFIGILCA 504
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 19/367 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ F+ +T V L C S L GR IH K G N + T+L Y + D
Sbjct: 461 IKFNSYTIVSLLAFCK---DGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDER 517
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+ +F + P R +WN++I+ Y K AL+LF M +S ++P T++
Sbjct: 518 AATNMFTRCPQRDLVSWNSLISSYIKNDNAGK-----ALLLFNHM---ISELEPNSVTII 569
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+L+ +QL L G C+H Y + E D + A + MY++CG L A IF ++
Sbjct: 570 NILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQ 629
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+++++W AM TG +HG+G +A M D G KPN V+F S+ +AC H+GL GL
Sbjct: 630 TRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQ 689
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF +M +G+ P + HY C+VDLLGR GH EA FI +PI+PDA +WR+LLS+C +
Sbjct: 690 LFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIK 749
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ L E + L++L+P +F+ LSNIYA+A W +V +RK ++ + +
Sbjct: 750 SNNKLLETIFGKLVELEPS--------NPGNFILLSNIYAAAGLWSEVVQIRKWLRERGL 801
Query: 462 ETEPGSS 468
PG+S
Sbjct: 802 GKPPGTS 808
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 22/300 (7%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF--MFNVLVATTLIHFYASNKD 159
+T D T L +C R ++ G + +H RG + +V V T L+ FY
Sbjct: 56 ITPDSATMPLVLKACGRLNAI-----GNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGL 110
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
++ KVF +MP R +WNA+I+GY C A++LF +M +G+ P T
Sbjct: 111 VAEASKVFVEMPERDLVSWNALISGYVGCL-----CYKEAVLLFVEM--KKAGLTPNSRT 163
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL--LIF 277
+V +L ++ L G +HGY + + + D ++GTALV Y + D L +F
Sbjct: 164 VVALLLACGEMLELRLGQEIHGYCLRN-GLFDMDAYVGTALVGFYMR---FDAVLSHRVF 219
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
S M +N+++W A+ TG G +A++L SM G+K +AVT + AC G +
Sbjct: 220 SLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLR 279
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G+ L + K+ + + + ++++ G LE ++ +P DA LW S++S+
Sbjct: 280 LGMQL-HQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISS 337
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 152/341 (44%), Gaps = 35/341 (10%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ FD T + + +CA + L LG Q+H K + ++ + L++ Y+ N +
Sbjct: 258 IKFDAVTMLVVIQACAEY---GCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLE 314
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
S +F+ +P +A WN+MI+ Y A+ A+ LF M ++ +K T+
Sbjct: 315 SSWALFNAVPTSDAALWNSMISSYIGFGFHAE-----AIALFIKMRLE--RIKEDVRTIA 367
Query: 222 CVLSVSSQLGLLE-FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
+LS+ + L +G +H + K+ E D ++G AL+ MY K + A +F +M
Sbjct: 368 IMLSLCNDLNDGSIWGRGLHAHAMKSGI--ELDAYLGNALLSMYVKHNQITAAQYVFEKM 425
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG--LVEE 338
R +V++W M + A +A L M + +K N+ T SL A C +
Sbjct: 426 RGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGR 485
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+H F K G+E + + + ++ G A N P + D + W SL+S+
Sbjct: 486 SIHGF---AIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISS- 540
Query: 399 NVHGDVALGEKVGKILL-------QLQPE-VTFVDV--ACT 429
+ GK LL +L+P VT +++ +CT
Sbjct: 541 -----YIKNDNAGKALLLFNHMISELEPNSVTIINILTSCT 576
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
S WN++I + +K D A +L ++ G+ P TM VL +L +
Sbjct: 25 SKDWNSIIKHH---TKLKNDHA----ILSTYTQMESLGITPDSATMPLVLKACGRLNAIG 77
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +H + + NDV +GTALVD Y KCG + A +F M E+++++W A+ +G
Sbjct: 78 NGVRIHSCIRGLDLI--NDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISG 135
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
EA+ L M+ G+ PN+ T +L AC
Sbjct: 136 YVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLAC 171
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 141/454 (31%), Positives = 242/454 (53%), Gaps = 30/454 (6%)
Query: 27 IHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR--- 82
+H +L+++ P A +LI +Y + ++ K VF ++++N L R
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK----VFDETRERTIYVWNALFRALA 155
Query: 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA-RFCSLSTLWLGRQIHVHVTKR 138
C + V W+ + D FTY F L +C S+S L G++IH H+ +
Sbjct: 156 MVGCGKELLDLYVQMNWIG---IPSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRH 212
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G+ N+ V TTL+ YA +S VF MP ++ +W+AMI + K
Sbjct: 213 GYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMK----- 267
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL LF+ M+++ P TMV VL + L LE G +HGY+ + ++ + +
Sbjct: 268 ALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGL--DSILPVLN 325
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+ MY +CG + +F M+ ++V++W ++ + +HG G +AI++ ++M G P
Sbjct: 326 ALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSP 385
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ ++F ++ AC HAGLVEEG LF++M SK+ + P ++HY+C+VDLLGRA L+EA
Sbjct: 386 SYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKL 445
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + +P +W SLL +C +H +V L E+ +L +L+P + ++V L++
Sbjct: 446 IEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPR--------NAGNYVLLAD 497
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
IYA A+ W + +SV K ++ + ++ PG S ++
Sbjct: 498 IYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEV 531
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 140/307 (45%), Gaps = 32/307 (10%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ + SCA+ SLS G +H + GF + +AT LI+ Y I +KVF
Sbjct: 80 TFEHLICSCAQQNSLSD---GLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVF 136
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT---TMVCVL 224
D+ R+ WNA+ ++ C L L+ M + G+ P+D T V
Sbjct: 137 DETRERTIYVWNALF-----RALAMVGCGKELLDLYVQM--NWIGI-PSDRFTYTFVLKA 188
Query: 225 SVSSQLGL--LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
V S+L + L+ G +H ++ + Y E ++ + T L+D+Y+K G + A +F M
Sbjct: 189 CVVSELSVSPLQKGKEIHAHILRHGY--EANIHVMTTLLDVYAKFGSVSYANSVFCAMPT 246
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
KN ++W+AM A + +A+ L M PN+VT ++ AC +E+G
Sbjct: 247 KNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQG- 305
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI-----KPDAILWRSLL 395
L + G++ + + ++ + GR G + +MG + D + W SL+
Sbjct: 306 KLIHGYILRRGLDSILPVLNALITMYGRCGEI------LMGQRVFDNMKNRDVVSWNSLI 359
Query: 396 SACNVHG 402
S +HG
Sbjct: 360 SIYGMHG 366
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 28/376 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKR----------GFMFNVLVATTLIHFYASN 157
T + L +CA SL G +IH + K G +++V LI Y+
Sbjct: 403 TIISVLSACA---SLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 459
Query: 158 KDISSGKKVFDQMPM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ + + +FD +P+ R+ TW MI G+ +Q + D AL LF +M+ + GV P
Sbjct: 460 RSFKAARSIFDDIPLEERNVVTWTVMIGGH-AQYGDSND----ALKLFVEMISEPYGVAP 514
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T+ C+L + L + G +H Y+ + + F+ L+DMYSKCG +D A
Sbjct: 515 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 574
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M +K+ ++WT+M TG +HG+G+EA+ + D MR G P+ +TF + AC H G+
Sbjct: 575 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 634
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++GL FD+M + +G+ P +HY+C +DLL R+G L++A+ + +P++P A++W +LL
Sbjct: 635 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALL 694
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
SAC VH +V L E L+++ E + +SNIYA+A RW DV +R
Sbjct: 695 SACRVHSNVELAEHALNKLVEMNAE--------NDGSYTLISNIYATAGRWKDVARIRHL 746
Query: 456 MKVKRVETEPGSSILQ 471
MK ++ PG S +Q
Sbjct: 747 MKKSGIKKRPGCSWVQ 762
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 151/343 (44%), Gaps = 53/343 (15%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D + V L +C SL + +++H + + G +V V LI YA + +
Sbjct: 264 DIISIVNILPACG---SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAV 320
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKK-------------------------------AK 193
KVF+ M + +WNAM+ GY SQS +
Sbjct: 321 KVFNMMEFKDVVSWNAMVAGY-SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQR 379
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY--------MEK 245
C+ AL LFR M+ SG P T++ VLS + LG G +H Y ++
Sbjct: 380 GCSHEALNLFRQMIF--SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDN 437
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWTAMATGMAIHGKGNE 303
F + D+ + AL+DMYSKC A IF + E+NV+TWT M G A +G N+
Sbjct: 438 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 497
Query: 304 AIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHY 359
A++L M GV PNA T + + AC H + G +H + ++ +
Sbjct: 498 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV-A 556
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+C++D+ + G ++ A + + K AI W S+++ +HG
Sbjct: 557 NCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG 598
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 157/370 (42%), Gaps = 42/370 (11%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKA---SPQS--- 58
P H FA L LK + + + QIH Q+I + L S P + L SP+S
Sbjct: 37 PSH--FASL-LKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGT 93
Query: 59 -----------TKIVHFVFTHFDPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTF 104
T V P +N LIR Q DS + + + +
Sbjct: 94 GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP 153
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT L +C L + G H + GF NV + L+ Y+ +
Sbjct: 154 DHFTLPHVLKACGE---LPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210
Query: 165 KVFDQMPMRS---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT--- 218
+FD++ R +WN++++ + S A+ AL LF M + V KPT+
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSN-----AWTALDLFSKMTLIVHE-KPTNERSD 264
Query: 219 --TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
++V +L L + VHG + P DVF+G AL+D Y+KCG ++NA+ +
Sbjct: 265 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFP--DVFVGNALIDAYAKCGLMENAVKV 322
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F+ M K+V++W AM G + G A L +MR + + VT+T++ A G
Sbjct: 323 FNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCS 382
Query: 337 EEGLHLFDNM 346
E L+LF M
Sbjct: 383 HEALNLFRQM 392
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 212/393 (53%), Gaps = 44/393 (11%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATT--LIHFYASNKDISSGKKVFDQMPMRSSA 176
F + + +G+ +H +V + ++ V TT L+ YA + +++F+ + ++
Sbjct: 235 FADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVV 294
Query: 177 TWNAMINGYCSQSKKAKD---------------------------CAFNALVLFRDMLVD 209
+W AMI G C +S + ++ C A LF M
Sbjct: 295 SWTAMIAG-CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM--R 351
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
SGV+PT T+V +LS+ + G L+ G VH Y++K E D + TALVDMY+KCG
Sbjct: 352 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV--EVDCILNTALVDMYAKCGD 409
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ A +F +++ W A+ TG A+HG G EA+ + M GVKPN +TF L A
Sbjct: 410 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHA 469
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C HAGLV EG LF+ M +G+ P I+HY C+VDLLGRAG L+EA+ I +PIKP+ I
Sbjct: 470 CSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTI 529
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W +L++AC +H + LGE LL+++PE + V +SNIYA+A RW D
Sbjct: 530 VWGALVAACRLHKNPQLGELAATQLLEIEPENCGYN--------VLMSNIYAAANRWSDA 581
Query: 450 ESVRKQMKVKRVETEPGSSILQT--TTHYTLDG 480
VRK MK ++ EPG S+++ T H L G
Sbjct: 582 AGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMG 614
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 182/402 (45%), Gaps = 61/402 (15%)
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
F+ + + P++++ V+A + K D+F L +C + +S LG++IH
Sbjct: 94 FVITSYTKRNQPRNALNVYAQ-LRKMDFEVDNFMAPSVLKACGQ---VSWTQLGKEIHGF 149
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
V K+G +V V L+ Y + + VFD+M R +W+ MI +++
Sbjct: 150 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSL------SRN 203
Query: 195 CAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
F+ AL L R+M + V+P++ MV ++++ + + G +H Y+ +
Sbjct: 204 KEFDMALELIREM--NFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMG 261
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG------------------- 294
V TAL+DMY+KCG L A +F+ + +K V++WTAM G
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQN 321
Query: 295 ---------MAIHGKGN---EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--L 340
++ + + N +A L D MR GV+P VT SL + C AG ++ G +
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
H + + K VE + +VD+ + G + A + I D +W ++++ +
Sbjct: 382 HSYID---KERVEVDCILNTALVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAM 437
Query: 401 HGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFV 434
HG GE+ I +++ + +TF+ + AC+ V
Sbjct: 438 HG---YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLV 476
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 129/281 (45%), Gaps = 34/281 (12%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
LSTL +QIH H+ K F + + D SG + SA WN +
Sbjct: 53 LSTLEQTKQIHAHIIKTHFHHALQIPLN---------DFPSG--------LSPSAQWNFV 95
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVH 240
I Y +++ A N R M +V + P+ VL Q+ + G +H
Sbjct: 96 ITSYTKRNQPRN--ALNVYAQLRKMDFEVDNFMAPS------VLKACGQVSWTQLGKEIH 147
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G++ K + DVF+G AL+ MY +C C++ A L+F +M E++V++W+ M ++ + +
Sbjct: 148 GFVLKKGL--DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKE 205
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTS---LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
+ A+ L+ M V+P+ V S LFA + + + +H + +++ +
Sbjct: 206 FDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM-GKAMHAY-VIRNSNNEHMGVP 263
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ ++D+ + GHL A G+ K + W ++++ C
Sbjct: 264 TTTALLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGC 303
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 248/488 (50%), Gaps = 52/488 (10%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
A ++ + +KQ H+ L+ L + I +C+ + +FT P+ FL
Sbjct: 11 ACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALK-LFTTLPNPDTFL 69
Query: 77 FNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+NTL + P S+L +++ + + +T + FT+ S R C L +Q+
Sbjct: 70 YNTLFKAFFSLSQTPSLSLLFYSHML-QHCVTPNAFTFP----SLIRACKLEEE--AKQL 122
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK- 190
H HV K GF + LIH Y + + ++VF M + +W ++++GY
Sbjct: 123 HAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLV 182
Query: 191 ------------KAKDCAFNALV--------------LFRDMLVDVSGVKPTDTTMVCVL 224
K ++NA++ LFR M V+ ++ +L
Sbjct: 183 DEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVE-KKMELDRFVAATML 241
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + +G LE G +H Y+EKT + ++ + T ++DMY KCGCLD A +F ++ K
Sbjct: 242 SACTGVGALEQGMWIHKYVEKTGIVLDSK--LATTIIDMYCKCGCLDKAFHVFCGLKVKR 299
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLF 343
V +W M G A+HGKG +AIRL M + V P+++TF ++ AC H+GLVEEG + F
Sbjct: 300 VSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYF 359
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
M G++P +HY C+VDLL RAG LEEA I +P+ PDA + +LL AC +HG+
Sbjct: 360 RYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGN 419
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ LGE+VG +++L PE S +V L N+YAS +W V VRK M + V+
Sbjct: 420 LELGEEVGNRVIELDPE--------NSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKK 471
Query: 464 EPGSSILQ 471
EPG S+++
Sbjct: 472 EPGFSMIE 479
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 238/452 (52%), Gaps = 31/452 (6%)
Query: 25 KQIHAQLIT-NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
KQ+H I N + + LI Y + ++ + F +FD L +N ++
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE--ILFERHNFD---LVAWNAMMAG 491
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ ++ +FA +G + DDFT +C +++ G+Q+H + K G
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERS-DDFTLATVFKTCGFLFAINQ---GKQVHAYAIKSG 547
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ ++ V++ ++ Y D+S+ + FD +P+ W MI+G ++ + AF+
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEER--AFHV 605
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
R M GV P + T+ + SS L LE G +H K ND F+GT+
Sbjct: 606 FSQMRLM-----GVLPDEFTIATLAKASSCLTALEQGRQIHANALK--LNCTNDPFVGTS 658
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMY+KCG +D+A +F R+ N+ W AM G+A HG+G E ++L M+ G+KP+
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF + +AC H+GLV E +M +G++P I+HYSC+ D LGRAG +++A N I
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLI 778
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ ++ A ++R+LL+AC V GD G++V LL+L+P S +V LSN+
Sbjct: 779 ESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP--------LDSSAYVLLSNM 830
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YA+A +W +++ R MK +V+ +PG S ++
Sbjct: 831 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 20/302 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T++ L + + SL+ LG+Q+H K G + V+ +LI+ Y + +
Sbjct: 314 DQVTFILMLATAVKVDSLA---LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD M R +WN++I G + + A+ LF +L G+KP TM VL
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVE-----AVCLFMQLL--RCGLKPDQYTMTSVL 423
Query: 225 SVSSQLGL-LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S L L VH + K + +D F+ TAL+D YS+ C+ A ++F R
Sbjct: 424 KAASSLPEGLSLSKQVHVHAIKINNV--SDSFVSTALIDAYSRNRCMKEAEILFER-HNF 480
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LH 341
+++ W AM G G++ ++L M G + + T ++F C + +G +H
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ +KS + ++ + S I+D+ + G + A IP+ PD + W +++S C +
Sbjct: 541 AY-AIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIEN 596
Query: 402 GD 403
G+
Sbjct: 597 GE 598
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 4/204 (1%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S L LG+ H + + LI Y+ ++ ++VFD+MP R +WN+++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
Y S+ + A +LFR + DV V + T+ +L + G + HGY
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDV--VYTSRMTLSPMLKLCLHSGYVWASESFHGY 170
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
K + D F+ ALV++Y K G + ++F M ++V+ W M G
Sbjct: 171 ACKIGL--DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKE 228
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSL 326
EAI L + G+ PN +T L
Sbjct: 229 EAIDLSSAFHSSGLNPNEITLRLL 252
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F DM+ S V+ T + +L+ + ++ L G VH K + + + +L++
Sbjct: 303 FADMVE--SDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL--DLMLTVSNSLIN 358
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY K A +F M E+++++W ++ G+A +G EA+ L + CG+KP+ T
Sbjct: 359 MYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418
Query: 323 FTSLFAACCHAGLVEEGLHL 342
TS+ A A + EGL L
Sbjct: 419 MTSVLKA---ASSLPEGLSL 435
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 237/468 (50%), Gaps = 59/468 (12%)
Query: 42 YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC---------------TPP 86
Y++LI+ + +A + I ++ + P +FL N LI P
Sbjct: 64 YSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMP 123
Query: 87 QDSVLVFAYWVS---------KGL----LTFDD------FTYVFALGSCARFCSLSTLWL 127
Q +V+ + +S K L L D +TY L SC +
Sbjct: 124 QRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV----- 178
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
R +H + K G +V V + LI +A + VFD+M + WN++I G+
Sbjct: 179 -RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S+ AL LF+ M +G T+ VL + L LLE G H ++ K
Sbjct: 238 NSRSDV-----ALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY- 289
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ D+ + ALVDMY KCG L++AL +F++M+E++V+TW+ M +G+A +G EA++L
Sbjct: 290 ---DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 346
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ G KPN +T + AC HAGL+E+G + F +MK +G++P +HY C++DLLG
Sbjct: 347 FERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLG 406
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
+AG L++A + + +PDA+ WR+LL AC V ++ L E K ++ L PE
Sbjct: 407 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE------- 459
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
+ + LSNIYA++++W VE +R +M+ + ++ EPG S ++
Sbjct: 460 -DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 154/371 (41%), Gaps = 51/371 (13%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
L+ ++ L C+ ++ Q+ + F L L R DS+ W
Sbjct: 10 LFRPVVTLRCSYSSTDQTLLLSEFT-------RLCYQRDLPRAMKAMDSLQSHGLWA--- 59
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
D TY + C S + G I H+ G + + LI+ Y +
Sbjct: 60 ----DSATYSELIKCCI---SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLL 112
Query: 161 SSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
+ ++FDQMP R+ +W MI+ Y C +K A LVL ML D V+P
Sbjct: 113 NDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK----ALELLVL---MLRD--NVRPNVY 163
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T VL + + + C G +++ E+DVF+ +AL+D+++K G ++AL +F
Sbjct: 164 TYSSVLRSCNGMSDVRMLHC--GIIKEGL---ESDVFVRSALIDVFAKLGEPEDALSVFD 218
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M + + W ++ G A + + + A+ L M+ G T TS+ AC L+E
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278
Query: 339 GLHLFDNMKSKWGVEPHIKHY-------SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
G+ HI Y + +VD+ + G LE+A + + D I W
Sbjct: 279 GMQ----------AHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITW 327
Query: 392 RSLLSACNVHG 402
+++S +G
Sbjct: 328 STMISGLAQNG 338
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 224/398 (56%), Gaps = 23/398 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + ++ ++++ +F + G+ T D T V L +CA+ L L G +H ++
Sbjct: 294 LIDGFVQNHEHKEALRIFEEMLLHGV-TPDGITLVSVLSACAQ---LGELRKGMHVHSYI 349
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
G + ++ +LI+ YA D+++ ++VF M + +W M+ GY +
Sbjct: 350 KDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTM-- 407
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AFN LF +M ++ V + +V +LS SQLG L+ G +H Y+E+ D+
Sbjct: 408 AFN---LFEEM--KIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNV--AKDLC 460
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC- 314
+ +ALVDMY+KCGC+D A IF +M+ K L+W AM G+A +G G EA+ L D M +
Sbjct: 461 LESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQ 520
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
KP+ +T ++ AC H G+V+EGL F M S GV P +HY CIVDLLGRAG L+E
Sbjct: 521 DPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSS-LGVVPDTEHYGCIVDLLGRAGMLDE 579
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A++FI +PI+P+ ++W SLL+AC VH + LG+ +G+ ++ + P DV V
Sbjct: 580 AFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPN----DVGV----HV 631
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+SN++A +W DVE VR M + +E PG S +Q
Sbjct: 632 LVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 14/346 (4%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
R L L A + +H+ ++H +L+ L S A + A+ + VF
Sbjct: 17 RHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFD 76
Query: 68 HFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
PN F++N +IR C P+D++ VF +G+ + D++T + + A F L
Sbjct: 77 GMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGV-SPDNYTMAAVVSASAAFAGLK 135
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G IH V + GF +V V + L+++Y + + + KVF++M R +W +MI+
Sbjct: 136 WRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMIS 195
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
C+Q C VL + G+ P T++ +LS Q ++ G V+ +
Sbjct: 196 A-CAQ------CGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV 248
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
K + E DV I AL+ MY+KCGCL +AL F M + +W + G + + E
Sbjct: 249 GK--FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKE 306
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
A+R+ + M GV P+ +T S+ +AC G + +G+H+ +K
Sbjct: 307 ALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDN 352
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 152/519 (29%), Positives = 247/519 (47%), Gaps = 81/519 (15%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ K A +P ++QIH L+ + + L + + + L C + VF
Sbjct: 2 IRKGSARLSPRAVRQIHGHLVVGGIAAARLQHLRELLLSCVATFRGR-MGYARKVFDGIP 60
Query: 71 PPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P+LF+ N ++R P D+ V+ L D FT+ + L +CA L
Sbjct: 61 RPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACA---GLPGSR 117
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFY-------------------------------A 155
GRQ+H V K GF+ + V LI+ + A
Sbjct: 118 AGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHA 177
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------------------------- 190
+ D+++ +K+FD+ + WN M+ Y +
Sbjct: 178 ARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITG 237
Query: 191 -KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG--YMEKTF 247
A+ +AL +F +M +G P + T+V +LS + GLL+ G +H ++E+
Sbjct: 238 YAAQGMLKHALEVFDEM--RAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERR- 294
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
P + +G ALV MY+KCG L A+ F+ M++ +V TW ++ G+A HG+ +++R
Sbjct: 295 --PWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRF 352
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M + + PN ++F + AC HAGLVE+G F MK ++G+EP+ +HYSCIVD+LG
Sbjct: 353 FKKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLG 412
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+EAY + + +P A++WR+LL AC HG++ LG+ V + LL + +
Sbjct: 413 RAGLLDEAYAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNED------- 465
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
S D+V LS IYAS+ W VE+ R+ M + + G
Sbjct: 466 -ASADYVLLSGIYASSGEWLGVETERRSMDRRGIRKAAG 503
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 237/468 (50%), Gaps = 59/468 (12%)
Query: 42 YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC---------------TPP 86
Y++LI+ + +A + I ++ + P +FL N LI P
Sbjct: 64 YSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMP 123
Query: 87 QDSVLVFAYWVS---------KGL----LTFDD------FTYVFALGSCARFCSLSTLWL 127
Q +V+ + +S K L L D +TY L SC +
Sbjct: 124 QRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV----- 178
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
R +H + K G +V V + LI +A + VFD+M + WN++I G+
Sbjct: 179 -RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S+ AL LF+ M +G T+ VL + L LLE G H ++ K
Sbjct: 238 NSRSDV-----ALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY- 289
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ D+ + ALVDMY KCG L++AL +F++M+E++V+TW+ M +G+A +G EA++L
Sbjct: 290 ---DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 346
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ G KPN +T + AC HAGL+E+G + F +MK +G++P +HY C++DLLG
Sbjct: 347 FERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLG 406
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
+AG L++A + + +PDA+ WR+LL AC V ++ L E K ++ L PE
Sbjct: 407 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE------- 459
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
+ + LSNIYA++++W VE +R +M+ + ++ EPG S ++
Sbjct: 460 -DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 154/371 (41%), Gaps = 51/371 (13%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
L+ ++ L C+ ++ Q+ + F L L R DS+ W
Sbjct: 10 LFRPVVTLRCSYSSTDQTLLLSEFT-------RLCYQRDLPRAMKAMDSLQSHGLWA--- 59
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
D TY + C S + G I H+ G + + LI+ Y +
Sbjct: 60 ----DSATYSELIKCCI---SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLL 112
Query: 161 SSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
+ ++FDQMP R+ +W MI+ Y C +K A LVL ML D V+P
Sbjct: 113 NDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK----ALELLVL---MLRD--NVRPNVY 163
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T VL + + + C G +++ E+DVF+ +AL+D+++K G ++AL +F
Sbjct: 164 TYSSVLRSCNGMSDVRMLHC--GIIKEGL---ESDVFVRSALIDVFAKLGEPEDALSVFD 218
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M + + W ++ G A + + + A+ L M+ G T TS+ AC L+E
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278
Query: 339 GLHLFDNMKSKWGVEPHIKHY-------SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
G+ HI Y + +VD+ + G LE+A + + D I W
Sbjct: 279 GMQ----------AHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITW 327
Query: 392 RSLLSACNVHG 402
+++S +G
Sbjct: 328 STMISGLAQNG 338
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 165/507 (32%), Positives = 262/507 (51%), Gaps = 62/507 (12%)
Query: 1 MLSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTK 60
M LP + A + +A T +K IHA L L L +++ SP
Sbjct: 176 MHMLPTSQSLASMA-EACLTMQALKLIHALAFRANLHHHALV--LAKIFRFAAVSPNGC- 231
Query: 61 IVHF---VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
+H+ +F+ PN F +NTLIR + P SV +F + + + D FT+ F L
Sbjct: 232 -LHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQ-MRRNCVDPDGFTFTFLL 289
Query: 114 GSCARF-CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK-------------- 158
+R L + +IH V K GF F++ V LIH YA+
Sbjct: 290 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 349
Query: 159 -----------------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
++ ++VF +MP R +W M++GY +Q+K++++ AL
Sbjct: 350 ADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGY-AQAKRSRE----ALE 404
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR+M DV GV+P + MV V+S + LG LE G VH Y+++ + V + AL+
Sbjct: 405 LFREMR-DV-GVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWM--VSLCNALI 460
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KCGC+D A +F+ M K+++TW +M + A HG +A R+ M G++P+ V
Sbjct: 461 DMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGV 520
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF +L A H G V++G LF++M+ +GVE ++HY C+VD+LGRAG LEEAY I
Sbjct: 521 TFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITS 580
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+ + + ++W +LL+AC ++GDV +GE+V K L++L+P+ ++ L +IY
Sbjct: 581 MSMPCNDVVWGALLAACRIYGDVEMGERVLKKLIELKPD--------EGGYYILLRDIYV 632
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSS 468
+A R + +R+ M V + G S
Sbjct: 633 AAGRRAEAIELRRAMDVNGAKKTLGCS 659
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/374 (36%), Positives = 208/374 (55%), Gaps = 22/374 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L +CA SL LG+QIH V K G NV V+ ++ YA +I +
Sbjct: 337 NNFTFASVLQACASSVSLD---LGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM 393
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+F+++P R+ TWN +I GY + A+ LF ML ++PT+ T VL
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGER-----AMNLFTHMLE--HDMQPTEVTYSSVL 446
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S+ L LE G +H KT Y D + +L+DMY+KCG +++A L F +M +++
Sbjct: 447 RASASLAALEPGLQIHSLTIKTMY--NKDTVVANSLIDMYAKCGRINDARLTFDKMNKRD 504
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W AM G ++HG EA+ L D M+ KPN +TF + +AC +AGL+ +G F+
Sbjct: 505 EVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFE 564
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + ++P I+HY+C+V LLGR G +EA I I +P ++WR+LL AC +H V
Sbjct: 565 SMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKV 624
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG + +L+++P V LSN+YA+A RW +V VRK M+ K+V E
Sbjct: 625 DLGRVCAQHVLEMEPH--------DDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKE 676
Query: 465 PGSSIL--QTTTHY 476
PG S + Q HY
Sbjct: 677 PGLSWVENQGVVHY 690
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 147/299 (49%), Gaps = 16/299 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT AL SC L +G+ +H K + ++ V L+ YA + +I +
Sbjct: 236 NNFTISGALKSCL---GLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++F++MP W+ MI Y +QS ++K+ AL LF M + V P + T VL
Sbjct: 293 RLFEEMPKTDLIPWSLMIARY-AQSDRSKE----ALDLFLRM--RQTSVVPNNFTFASVL 345
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L+ G +H + K + ++VF+ A++D+Y+KCG ++N++ +F + ++N
Sbjct: 346 QACASSVSLDLGKQIHSCVLK--FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRN 403
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+TW + G G G A+ L M + ++P VT++S+ A +E GL +
Sbjct: 404 DVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHS 463
Query: 345 -NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+K+ + + + + ++D+ + G + +A K D + W +++ ++HG
Sbjct: 464 LTIKTMYNKDTVVA--NSLIDMYAKCGRINDA-RLTFDKMNKRDEVSWNAMICGYSMHG 519
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 187/452 (41%), Gaps = 55/452 (12%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH-FVFTHFDPPNLF----LFNT 79
+ IH Q +AL S YA ++Q A P + K +H + +LF L N
Sbjct: 21 RNIHHQQCLSALDSHS-YAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNF 79
Query: 80 LIRCTPPQDSVLVFAYWVSKGLLTF--------DDFTYVFALGSCAR------------- 118
++ QD+ +F ++F D + AL R
Sbjct: 80 YVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVF 139
Query: 119 ------FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
S+ L +H V K G + V T LI Y+ ++ + VFD +
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICC 199
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
+ +W M+ Y A++C + +L LF M + G KP + T+ L L
Sbjct: 200 KDMVSWTGMVACY------AENCFYEESLQLFNQM--RIMGYKPNNFTISGALKSCLGLE 251
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
G VHG K Y ++D+F+G AL+++Y+K G + +A +F M + +++ W+ M
Sbjct: 252 AFNVGKSVHGCALKGCY--DHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLM 309
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
A + EA+ L MR V PN TF S+ AC + ++ G + + K+G
Sbjct: 310 IARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVL-KFG 368
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ ++ + I+D+ + G +E + +P + D + W +++ GD GE+
Sbjct: 369 LNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRND-VTWNTIIVGYVQLGD---GERAM 424
Query: 412 KILLQ-----LQP-EVTFVDVACTSEDFVALS 437
+ +QP EVT+ V S AL
Sbjct: 425 NLFTHMLEHDMQPTEVTYSSVLRASASLAALE 456
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/489 (30%), Positives = 257/489 (52%), Gaps = 51/489 (10%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNL 74
K TT ++Q HA LI + A I +C ASP + + VF PNL
Sbjct: 32 KYCTTMRDLQQFHAHLIKSGQAIESFAASRILAFC---ASPLGNMDYAYLVFLQMQNPNL 88
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL--- 127
F +NT+IR + PQ ++ +F + + TY + F + S L L
Sbjct: 89 FSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYP------SIFKAYSQLGLAHD 142
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC- 186
G Q+H + K G F+ + T+++ YA+ +S +++F+Q +WN+MI G
Sbjct: 143 GAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAK 202
Query: 187 ----SQSKKAKD-------CAFNALV-------LFRDML-----VDVSGVKPTDTTMVCV 223
+S+K D ++N+++ +F++ L + ++P++ TMV +
Sbjct: 203 CGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSL 262
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L+ S+Q+G L G +H Y++K + + + TA++DMY KCG + NAL +F ++ +
Sbjct: 263 LNASAQIGALRQGVWIHEYIKKNNL--QLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCR 320
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++ +W +M G+A++G EAI + + +KP+ ++F ++ AC H +V+EG+ F
Sbjct: 321 SLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFF 380
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
MK+ + +EP IKHY+ +VD++ RAG LEEA FI +PI+ DAI+W LLSAC ++G+
Sbjct: 381 SRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGN 440
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ ++ + + +L PE T +V ++NI+A + R M++K+VE
Sbjct: 441 TEMAKRAAEKVNELDPEETM--------GYVLMANIHAWGNNFVGAMEKRVAMRMKKVEK 492
Query: 464 EPGSSILQT 472
EPG S ++
Sbjct: 493 EPGGSFIEV 501
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 19/358 (5%)
Query: 111 FALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
F L S C L LG+Q+ K G N+ V + ++ Y + ++F+Q
Sbjct: 242 FTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQ 301
Query: 170 MPMRSSATWNAMINGYCSQSKKAKD------CAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
M S TWNAMI+GY AKD F AL +FRD+ V +KP T +
Sbjct: 302 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSV--MKPDLFTFSSI 359
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LSV S + LE G +H K+ ++ +DV + +ALV+MY+KCGC+ +A F M +
Sbjct: 360 LSVCSAMMALEQGEQIHAQTIKSGFL--SDVVVNSALVNMYNKCGCIQDANKAFLEMPTR 417
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+TWT+M +G + HG+ EAI+L + MR GV+PN +TF SL +AC +AGLVEE H F
Sbjct: 418 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYF 477
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D MK ++ +EP + HY C++D+ R G +E+A++FI +P+ +W SL++ C HG+
Sbjct: 478 DMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 537
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ L LL+L+P+ E ++ L N+Y S ERW DV VRK MK + V
Sbjct: 538 MELAFYAADKLLELKPKGI--------ETYILLLNMYISTERWQDVARVRKLMKQEDV 587
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 166/353 (47%), Gaps = 35/353 (9%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+T L +C C + LG+Q+H + K G + +L YA + S +
Sbjct: 140 YTLGATLNACLASCDVD---LGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRA 196
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
F ++P ++ TW MI+ C++ ++C + LF DML+D GV P + T+ V+S+
Sbjct: 197 FWRIPEKNVITWTTMISA-CAED---EECVELGMSLFIDMLMD--GVMPNEFTLTSVMSL 250
Query: 227 SSQLGLLEFGACVHGYMEKTFYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
L G V + +F + E ++ + + + +Y + G D A+ +F +M + ++
Sbjct: 251 CGTRLDLNLGKQVQAF---SFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASI 307
Query: 286 LTWTAMATGMA-----------IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+TW AM +G A +G +A+ + ++ +KP+ TF+S+ + C
Sbjct: 308 ITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMM 367
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
+E+G + K G + S +V++ + G +++A + +P + + W S+
Sbjct: 368 ALEQGEQIHAQ-TIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRT-FVTWTSM 425
Query: 395 LSACNVHGD----VALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIY 440
+S + HG + L E++ L ++P E+TFV + AC+ V + Y
Sbjct: 426 ISGYSQHGQPQEAIQLFEEMR--LAGVRPNEITFVSLLSACSYAGLVEEAEHY 476
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 115/243 (47%), Gaps = 26/243 (10%)
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+++FD MP R+ TW A++ GY S+ A L +F +ML G P+ T+
Sbjct: 92 ARRLFDGMPERNVVTWTALVTGYTLNSQPAL-----GLEVFVEML--EMGRYPSHYTLGA 144
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
L+ ++ G VHGY K Y E+ +G +L +Y+K G LD+AL F R+ E
Sbjct: 145 TLNACLASCDVDLGKQVHGYAIK--YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPE 202
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRL-----LDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
KNV+TWT M + A + E + L +D + D GV PN T TS+ + C
Sbjct: 203 KNVITWTTMISACA---EDEECVELGMSLFIDMLMD-GVMPNEFTLTSVMSLCG----TR 254
Query: 338 EGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
L+L +++ K G E ++ + + L R G +EA + I W ++
Sbjct: 255 LDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAM 313
Query: 395 LSA 397
+S
Sbjct: 314 ISG 316
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+A +F M E+NV+TWTA+ TG ++ + + + M + G P+ T + AC
Sbjct: 91 DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ V+ G + K+G E + + L + G L+ A IP K + I W
Sbjct: 151 ASCDVDLGKQVH-GYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITW 208
Query: 392 RSLLSAC 398
+++SAC
Sbjct: 209 TTMISAC 215
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 232/463 (50%), Gaps = 38/463 (8%)
Query: 25 KQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K++HA + N ++ + + L+ +YC K ++ +F + L+N +I
Sbjct: 235 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR----KIGLWNAMIA 290
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ ++++L+F L + T + +C R + S IH V KR
Sbjct: 291 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR---KEAIHGFVVKR 347
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + V TL+ Y+ I ++F +M R TWN MI GY +
Sbjct: 348 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE-----D 402
Query: 199 ALVLFRDML---------VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL+L M +KP T++ +L + L L G +H Y K
Sbjct: 403 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL- 461
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
DV +G+ALVDMY+KCGCL + +F ++ +KNV+TW + +HG G EAI LL
Sbjct: 462 -ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 520
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M GVKPN VTF S+FAAC H+G+V+EGL +F MK +GVEP HY+C+VDLLGRA
Sbjct: 521 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 580
Query: 370 GHLEEAYNFIMGIPIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
G ++EAY + +P A W SLL A +H ++ +GE + L+QL+P V
Sbjct: 581 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV------- 633
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V L+NIY+SA W VR+ MK + V EPG S ++
Sbjct: 634 -ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 177/411 (43%), Gaps = 43/411 (10%)
Query: 5 PGHRCFALLKLKAITTPSHI---KQIHAQL--ITNALKSPPLYAQLIQLYCTKKASPQST 59
P + F L LKA+ + KQIHA + + S + L+ LY +K
Sbjct: 8 PDNYAFPAL-LKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGA 64
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF----------DDFTY 109
V+ VF N +N+LI S+ F W L F FT
Sbjct: 65 --VYKVFDRISERNQVSWNSLI------SSLCSFEKW-EMALEAFRCMLDENVEPSSFTL 115
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
V + +C+ L +G+Q+H + ++G + N + TL+ Y ++S K +
Sbjct: 116 VSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGS 174
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
R TWN +++ C + AL R+M+++ GV+P + T+ VL S
Sbjct: 175 FGGRDLVTWNTVLSSLCQNEQ-----LLEALEYLREMVLE--GVEPDEFTISSVLPACSH 227
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L +L G +H Y K + EN F+G+ALVDMY C + + +F M ++ + W
Sbjct: 228 LEMLRTGKELHAYALKNGSLDENS-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 286
Query: 290 AMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLV--EEGLHLFDNM 346
AM G + + EA+ L M + G+ N+ T + AC +G +E +H F
Sbjct: 287 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF--- 343
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
K G++ + ++D+ R G ++ A I G D + W ++++
Sbjct: 344 VVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR-IFGKMEDRDLVTWNTMITG 393
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 91/190 (47%), Gaps = 5/190 (2%)
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
V G+KP + +L + L +E G +H ++ K Y ++ V + LV++Y KCG
Sbjct: 3 VLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDS-VTVANTLVNLYRKCGD 61
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
+F R+ E+N ++W ++ + + K A+ M D V+P++ T S+ A
Sbjct: 62 FGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTA 121
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHY--SCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
C + + EGL + + + + + + + +V + G+ G L + ++G D
Sbjct: 122 CSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASS-KVLLGSFGGRD 179
Query: 388 AILWRSLLSA 397
+ W ++LS+
Sbjct: 180 LVTWNTVLSS 189
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 200/341 (58%), Gaps = 20/341 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T++ YA+N ++ + + +F++MP R+ +WNA+I GY F L
Sbjct: 263 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG-----LFFEVLGS 317
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F+ ML + S V P D T+V VLS ++LG L+ G VH Y E + + +V++G AL+D
Sbjct: 318 FKRMLSE-SDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL--KGNVYVGNALMD 374
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY+KCG ++NA+ +F M K++++W + G+A+H +G +A+ L M++ G KP+ +T
Sbjct: 375 MYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGIT 434
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + AC H GLVE+G F +M + + P I+HY C+VD+L RAG LE+A F+ +
Sbjct: 435 FIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM 494
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++ D ++W LL AC ++ +V L E + L++L+P+ ++V LSNIY
Sbjct: 495 PVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK--------NPANYVMLSNIYGD 546
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT----THYTLD 479
A RW DV ++ M+ + PG S+++ Y+LD
Sbjct: 547 AGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLD 587
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 110/442 (24%), Positives = 202/442 (45%), Gaps = 49/442 (11%)
Query: 5 PGHRCFA---LLKLKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTK 60
P HR + L++ T + QI AQ+I N + + + +L+ + T K + +
Sbjct: 32 PPHRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQ 91
Query: 61 IVHFVFTHFDPPNLFLFNTLIRCTPPQDSV--LVFAYWVSKGL-LTFDDFTYVFALGSCA 117
+ F PN+ L+N++ R +S +VF ++ KG+ + + FT+ L SC
Sbjct: 92 L----FDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCG 147
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ ++ L G Q+H + K GF N V TTLI Y++ + K+F +M R+
Sbjct: 148 K---INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 204
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
W +MINGY +A ++ L D++ P ++ + VS G +E G
Sbjct: 205 WTSMINGYI----------LSADLVSARRLFDLA---PERDVVLWNIMVS---GYIEGGD 248
Query: 238 CVHGYMEKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
V K F+ MP DV ++ Y+ G ++ +F M E+N+ +W A+ G A
Sbjct: 249 MVEA--RKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYA 306
Query: 297 IHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVE 353
+G E + M + V PN T ++ +AC G ++ G +H++ G++
Sbjct: 307 HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY---AESSGLK 363
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
++ + ++D+ + G +E A + G+ K D I W +L+ +H + G +
Sbjct: 364 GNVYVGNALMDMYAKCGIIENAISVFRGMDTK-DLISWNTLIGGLAMH---SRGADALNL 419
Query: 414 LLQL-----QPE-VTFVDVACT 429
Q+ +P+ +TF+ + C
Sbjct: 420 FFQMKNAGQKPDGITFIGILCA 441
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 224/398 (56%), Gaps = 23/398 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + ++ ++++ +F + G+ T D T V L +CA+ L L G +H ++
Sbjct: 294 LIDGFVQNHEHKEALRIFEEMLLHGV-TPDGITLVSVLSACAQ---LGELRKGMHVHSYI 349
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
G + ++ +LI+ YA D+++ ++VF M + +W M+ GY +
Sbjct: 350 KDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTM-- 407
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AFN LF +M ++ V + +V +LS SQLG L+ G +H Y+E+ D+
Sbjct: 408 AFN---LFEEM--KIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNV--AKDLC 460
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC- 314
+ +ALVDMY+KCGC+D A IF +M+ K L+W AM G+A +G G EA+ L D M +
Sbjct: 461 LESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQ 520
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
KP+ +T ++ AC H G+V+EGL F M S GV P +HY CIVDLLGRAG L+E
Sbjct: 521 DPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSS-LGVVPDTEHYGCIVDLLGRAGMLDE 579
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A++FI +PI+P+ ++W SLL+AC VH + LG+ +G+ ++ + P DV V
Sbjct: 580 AFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPN----DVGV----HV 631
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+SN++A +W DVE VR M + +E PG S +Q
Sbjct: 632 LVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 14/346 (4%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
R L L A + +H+ ++H +L+ L S A + A+ + VF
Sbjct: 17 RHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFD 76
Query: 68 HFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
PN F++N +IR C P+D++ VF +G+ + D++T + + A F L
Sbjct: 77 GMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGV-SPDNYTMAAVVSASAAFAGLK 135
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
G IH V + GF +V V + L+++Y + + + KVF++M R +W +MI+
Sbjct: 136 WRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMIS 195
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
C+Q C VL + G+ P T++ +LS Q ++ G V+ +
Sbjct: 196 A-CAQ------CGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQV 248
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
K + E DV I AL+ MY+KCGCL +AL F M + +W + G + + E
Sbjct: 249 GK--FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKE 306
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
A+R+ + M GV P+ +T S+ +AC G + +G+H+ +K
Sbjct: 307 ALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDN 352
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 232/463 (50%), Gaps = 38/463 (8%)
Query: 25 KQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K++HA + N ++ + + L+ +YC K ++ +F + L+N +I
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR----KIGLWNAMIA 377
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ ++++L+F L + T + +C R + S IH V KR
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR---KEAIHGFVVKR 434
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + V TL+ Y+ I ++F +M R TWN MI GY +
Sbjct: 435 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE-----D 489
Query: 199 ALVLFRDML---------VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL+L M +KP T++ +L + L L G +H Y K
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL- 548
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
DV +G+ALVDMY+KCGCL + +F ++ +KNV+TW + +HG G EAI LL
Sbjct: 549 -ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 607
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M GVKPN VTF S+FAAC H+G+V+EGL +F MK +GVEP HY+C+VDLLGRA
Sbjct: 608 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 667
Query: 370 GHLEEAYNFIMGIPIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
G ++EAY + +P A W SLL A +H ++ +GE + L+QL+P V
Sbjct: 668 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV------- 720
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V L+NIY+SA W VR+ MK + V EPG S ++
Sbjct: 721 -ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 39/388 (10%)
Query: 25 KQIHAQL--ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQIHA + + S + L+ LY +K V+ VF N +N+LI
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGA--VYKVFDRISERNQVSWNSLI- 171
Query: 83 CTPPQDSVLVFAYWVSKGLLTF----------DDFTYVFALGSCARFCSLSTLWLGRQIH 132
S+ F W L F FT V + +C+ L +G+Q+H
Sbjct: 172 -----SSLCSFEKW-EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVH 225
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ ++G + N + TL+ Y ++S K + R TWN +++ C +
Sbjct: 226 AYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ-- 282
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
AL R+M+++ GV+P + T+ VL S L +L G +H Y K + EN
Sbjct: 283 ---LLEALEYLREMVLE--GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
F+G+ALVDMY C + + +F M ++ + W AM G + + EA+ L M
Sbjct: 338 S-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396
Query: 313 D-CGVKPNAVTFTSLFAACCHAGLV--EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+ G+ N+ T + AC +G +E +H F K G++ + ++D+ R
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF---VVKRGLDRDRFVQNTLMDMYSRL 453
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G ++ A I G D + W ++++
Sbjct: 454 GKIDIAMR-IFGKMEDRDLVTWNTMITG 480
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 18/271 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + +R +++VL + + G+ D++ + L + A L + LG+QIH HV
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKP-DNYAFPALLKAVA---DLQDMELGKQIHAHV 123
Query: 136 TKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K G+ + V VA TL++ Y D + KVFD++ R+ +WN++I+ CS K
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM- 182
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE---FGACVHGYMEKTFYMPE 251
AL FR ML + V+P+ T+V V++ S L + E G VH Y E
Sbjct: 183 ----ALEAFRCMLDE--NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---GLRKGE 233
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ FI LV MY K G L ++ ++ ++++TW + + + + + EA+ L M
Sbjct: 234 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
GV+P+ T +S+ AC H ++ G L
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 7/212 (3%)
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+SK + A++ + DM+V G+KP + +L + L +E G +H ++ K
Sbjct: 70 RSKVRSNLLREAVLTYVDMIV--LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y ++ V + LV++Y KCG +F R+ E+N ++W ++ + + K A+
Sbjct: 128 YGVDS-VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA 186
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY--SCIVDL 365
M D V+P++ T S+ AC + + EGL + + + + + + + +V +
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAM 245
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G+ G L + ++G D + W ++LS+
Sbjct: 246 YGKLGKLASS-KVLLGSFGGRDLVTWNTVLSS 276
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 220/411 (53%), Gaps = 23/411 (5%)
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQDSVL-VFAYWVS--KGLLTFDDFTYVFALGSCARFC 120
+F + + +N +I + ++ + +VS + + DDFTY + +CA
Sbjct: 396 LIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA--- 452
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L G +IH + K G + V + L+ Y + +K+ ++ +++ +WN+
Sbjct: 453 GQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNS 512
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I+G+ SQ + NA F ML G+ P + T VL V + + +E G +H
Sbjct: 513 IISGFSSQKQSE-----NAQRYFSQMLE--MGIIPDNYTYATVLDVCANMATIELGKQIH 565
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ K +DV+I + LVDMYSKCG + ++ L+F + +++ +TW+AM A HG
Sbjct: 566 AQILKL--QLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGL 623
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +AI L + M+ VKPN F S+ AC H G V++GLH F M S +G++P ++HYS
Sbjct: 624 GEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYS 683
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGR+G + EA I +P + D ++WR+LLS C + G+V + EK LLQL P+
Sbjct: 684 CMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQ 743
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V L+N+YA W +V +R MK +++ EPG S ++
Sbjct: 744 --------DSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIE 786
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 175/405 (43%), Gaps = 47/405 (11%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVH------------FVFTHFD 70
KQ+H Q+I P +Y L+Q YC + K+ +F +
Sbjct: 26 KQVHTQMIVTGF-VPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAG 84
Query: 71 PPNLFLFNTLIRCTPPQDSVL---VFAYWVSKGL---------------LTFDDFTYVFA 112
N+ +L P +D V + + ++ G+ + D T+
Sbjct: 85 IGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVI 144
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L +C+ + LG Q+H + GF +V+ + L+ Y+ K + +VF +MP
Sbjct: 145 LKACS---GIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPE 201
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R+ W+A+I GY D L LF+DML GV + +T V + L
Sbjct: 202 RNLVCWSAVIAGYVQ-----NDRFIEGLKLFKDMLKVGMGV--SQSTYASVFRSCAGLSA 254
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
+ G +HG+ K+ + D IGTA +DMY+KC + +A +F+ + ++ A+
Sbjct: 255 FKLGTQLHGHALKSDF--AYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAII 312
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G A +G +A+ + S++ + + ++ + AC EG+ L + K G+
Sbjct: 313 VGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLH-GLAVKCGL 371
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+I + I+D+ G+ G L EA I + DA+ W ++++A
Sbjct: 372 GFNICVANTILDMYGKCGALMEAC-LIFEEMERRDAVSWNAIIAA 415
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 142/305 (46%), Gaps = 32/305 (10%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
T+ L C+ +L+ G+Q+H + GF+ + VA L+ FY + ++ KV
Sbjct: 7 LTFSHILQKCSNLKALNP---GKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKV 63
Query: 167 FDQMPMRSSATWNAMINGYCS-----------QSKKAKD-CAFNALV-------LFR--- 204
FD+MP R +WN +I GY S +D ++N+L+ + R
Sbjct: 64 FDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSI 123
Query: 205 DMLVDVSGVK-PTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
++ V + +K P D T +L S + G VH + + ENDV G+ALVD
Sbjct: 124 EIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGF--ENDVVTGSALVD 181
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKC LD+A +F M E+N++ W+A+ G + + E ++L M G+ + T
Sbjct: 182 MYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241
Query: 323 FTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+ S+F +C + G L + +KS + + I + +D+ + + +A+
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG--TATLDMYAKCERMFDAWKVFNT 299
Query: 382 IPIKP 386
+P P
Sbjct: 300 LPNPP 304
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 149/347 (42%), Gaps = 39/347 (11%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF----------TYVFALG 114
VF NL ++ +I D + +GL F D TY
Sbjct: 195 VFREMPERNLVCWSAVIAGYVQNDRFI-------EGLKLFKDMLKVGMGVSQSTYASVFR 247
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
SCA LS LG Q+H H K F ++ ++ T + YA + + KVF+ +P
Sbjct: 248 SCA---GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPP 304
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
++NA+I GY Q D AL +F+ + + G + ++ L+ S +
Sbjct: 305 RQSYNAIIVGYARQ-----DQGLKALDIFQSLQRNNLGFD--EISLSGALTACSVIKRHL 357
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +HG K ++ + ++DMY KCG L A LIF M ++ ++W A+
Sbjct: 358 EGIQLHGLAVKCGL--GFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAI--- 412
Query: 295 MAIHGKGNEAIRLLD---SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKW 350
+A H + E ++ L SM ++P+ T+ S+ AC + G + +KS
Sbjct: 413 IAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGM 472
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G++ + S +VD+ G+ G L EA + K + W S++S
Sbjct: 473 GLDWFVG--SALVDMYGKCGMLMEAEKIHARLEEKT-TVSWNSIISG 516
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 232/463 (50%), Gaps = 38/463 (8%)
Query: 25 KQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K++HA + N ++ + + L+ +YC K ++ +F + L+N +I
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR----KIGLWNAMIA 377
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ ++++L+F L + T + +C R + S IH V KR
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR---KEAIHGFVVKR 434
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + V TL+ Y+ I ++F +M R TWN MI GY +
Sbjct: 435 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE-----D 489
Query: 199 ALVLFRDML---------VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL+L M +KP T++ +L + L L G +H Y K
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL- 548
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
DV +G+ALVDMY+KCGCL + +F ++ +KNV+TW + +HG G EAI LL
Sbjct: 549 -ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 607
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M GVKPN VTF S+FAAC H+G+V+EGL +F MK +GVEP HY+C+VDLLGRA
Sbjct: 608 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 667
Query: 370 GHLEEAYNFIMGIPIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
G ++EAY + +P A W SLL A +H ++ +GE + L+QL+P V
Sbjct: 668 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV------- 720
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V L+NIY+SA W VR+ MK + V EPG S ++
Sbjct: 721 -ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 39/388 (10%)
Query: 25 KQIHAQL--ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQIHA + + S + L+ LY +K V+ VF N +N+LI
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGA--VYKVFDRISERNQVSWNSLI- 171
Query: 83 CTPPQDSVLVFAYWVSKGLLTF----------DDFTYVFALGSCARFCSLSTLWLGRQIH 132
S+ F W L F FT V + +C+ L +G+Q+H
Sbjct: 172 -----SSLCSFEKW-EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVH 225
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ ++G + N + TL+ Y ++S K + R TWN +++ C +
Sbjct: 226 AYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ-- 282
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
AL R+M+++ GV+P + T+ VL S L +L G +H Y K + EN
Sbjct: 283 ---LLEALEYLREMVLE--GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
F+G+ALVDMY C + + +F M ++ + W AM G + + EA+ L M
Sbjct: 338 S-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396
Query: 313 D-CGVKPNAVTFTSLFAACCHAGLV--EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+ G+ N+ T + AC +G +E +H F K G++ + ++D+ R
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF---VVKRGLDRDRFVQNTLMDMYSRL 453
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G ++ A I G D + W ++++
Sbjct: 454 GKIDIAMR-IFGKMEDRDLVTWNTMITG 480
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 18/271 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + +R +++VL + + G+ D++ + L + A L + LG+QIH HV
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKP-DNYAFPALLKAVA---DLQDMELGKQIHAHV 123
Query: 136 TKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K G+ + V VA TL++ Y D + KVFD++ R+ +WN++I+ CS K
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM- 182
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE---FGACVHGYMEKTFYMPE 251
AL FR ML + V+P+ T+V V++ S L + E G VH Y E
Sbjct: 183 ----ALEAFRCMLDE--NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---GLRKGE 233
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ FI LV MY K G L ++ ++ ++++TW + + + + + EA+ L M
Sbjct: 234 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
GV+P+ T +S+ AC H ++ G L
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 7/212 (3%)
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+SK + A++ + DM+V G+KP + +L + L +E G +H ++ K
Sbjct: 70 RSKVRSNLLREAVLTYVDMIV--LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y ++ V + LV++Y KCG +F R+ E+N ++W ++ + + K A+
Sbjct: 128 YGVDS-VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA 186
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY--SCIVDL 365
M D V+P++ T S+ AC + + EGL + + + + + + + +V +
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAM 245
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G+ G L + ++G D + W ++LS+
Sbjct: 246 YGKLGKLASS-KVLLGSFGGRDLVTWNTVLSS 276
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 212/370 (57%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H + GF N+ + LI Y+ ++ +
Sbjct: 222 DESTMVTVVSACAQSGSIE---LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETAC 278
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+ +P + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 279 GLFEGLPYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGETPNDVTMLSIL 331
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ + K+
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 391
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ + + + MR G++P+ +TF L +AC H+G+++ G H+F
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR 451
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 452 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 511
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE +V LSNIYA+A RW +V + R + K ++
Sbjct: 512 ELGESFAQNLIKIEPE--------NPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKV 563
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 564 PGCSSIEIDS 573
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 223/498 (44%), Gaps = 82/498 (16%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
++ IHAQ+I L + + +C VF PNL ++NT+ R
Sbjct: 6 LRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 65
Query: 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ P ++ ++ +S GLL + +T+ F L SCA+ + G+QIH HV K G
Sbjct: 66 HALSSDPVSALKLYVCMISLGLLP-NSYTFPFLLKSCAKSKAFKE---GQQIHGHVLKLG 121
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ-----SKKAKD 194
++ V T+LI Y N + KVFD+ P R ++ A+I GY S+ ++K D
Sbjct: 122 CDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFD 181
Query: 195 -------CAFNALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
++NA++ LF+DM+ + V+P ++TMV V+S +Q G +
Sbjct: 182 EIPVKDVVSWNAMISGYAETGNYKEALELFKDMM--KTNVRPDESTMVTVVSACAQSGSI 239
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
E G VH +++ + +++ I AL+D+YSKCG L+ A +F + K+V++W +
Sbjct: 240 ELGRQVHSWIDDHGF--GSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIG 297
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWG 351
G EA+ L M G PN VT S+ AC H G ++ G +H++ + + K G
Sbjct: 298 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK-G 356
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----------------------------- 382
V + ++D+ + G +E A+ I
Sbjct: 357 VANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFS 416
Query: 383 -----PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ---LQPEVT----FVDVACTS 430
I+PD I + LLSAC+ G + LG + + + Q + P++ +D+ S
Sbjct: 417 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHS 476
Query: 431 EDFVALSNIYASAERWPD 448
F + + E PD
Sbjct: 477 GLFKEAEEMINTMEMEPD 494
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 135/376 (35%), Positives = 201/376 (53%), Gaps = 31/376 (8%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV----------LVATTLIHFYASN 157
T V L +C S+ L G++ H + K F+ N+ V LI YA
Sbjct: 502 TLVSLLSACV---SVGALLHGKETHCYAIK--FILNLDGPDPGADDLKVINGLIDMYAKC 556
Query: 158 KDISSGKKVFDQMPM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ +K+FD + R TW MI GY A NAL LF M +KP
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGD-----ANNALQLFSGMFKMDKSIKP 611
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
D T+ C L ++L L FG VH Y+ + FY +F+ L+DMYSK G +D A +
Sbjct: 612 NDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVM-LFVANCLIDMYSKSGDVDTAQI 670
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M ++N ++WT++ TG +HG+G +A+R+ D MR + P+ +TF + AC H+G+
Sbjct: 671 VFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGM 730
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V+ G++ F+ M +GV+P +HY+C+VDL GRAG L EA I +P++P ++W +LL
Sbjct: 731 VDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALL 790
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
SAC +H +V LGE LL+L+ + + LSNIYA+A RW DV +R
Sbjct: 791 SACRLHSNVELGEFAANRLLELE--------SGNDGSYTLLSNIYANARRWKDVARIRYT 842
Query: 456 MKVKRVETEPGSSILQ 471
MK ++ PG S +Q
Sbjct: 843 MKRTGIKKRPGCSWIQ 858
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 185/439 (42%), Gaps = 65/439 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LK + +H K +H Q I L L LI Y ++ + ++ + P ++
Sbjct: 168 LKECNSLAHAKLLHQQSIMQGLLFH-LATNLIGTYIASNSTAYAILLLERLPP--SPSSV 224
Query: 75 FLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
F +N LIR P+D ++ S G T D +T+ F +CA SLS
Sbjct: 225 FWWNQLIRRALHLGSPRDVFTLYRQMKSLGW-TPDHYTFPFVFKACANLSSLSLG---AS 280
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS---ATWNAMINGYCS 187
+H V++ GF NV V ++ Y + +FD + R +WN++++ Y
Sbjct: 281 LHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMW 340
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S A AL LF M + P ++V +L + L G VHG+ ++
Sbjct: 341 ASD-----ANTALALFHKMTTR-HLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSG 394
Query: 248 YMPENDVFIGTALVDMYSKCGC-------------------------------LDNALLI 276
+ +DVF+G A+VDMY+KCG L++AL +
Sbjct: 395 LV--DDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSL 452
Query: 277 FSRMREKN----VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
F RM E+N V+TWTA+ TG A G+G EA+ + M DCG +PN VT SL +AC
Sbjct: 453 FERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVS 512
Query: 333 AGLVEEG-------LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI 384
G + G + N+ +K + ++D+ + E A + P
Sbjct: 513 VGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPK 572
Query: 385 KPDAILWRSLLSACNVHGD 403
D + W ++ HGD
Sbjct: 573 DRDVVTWTVMIGGYAQHGD 591
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 21/200 (10%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL--VATTLIHFYASNKDISS 162
+DFT AL +CAR L+ L GRQ+H +V R F +V+ VA LI Y+ + D+ +
Sbjct: 612 NDFTLSCALVACAR---LAALRFGRQVHAYVL-RNFYGSVMLFVANCLIDMYSKSGDVDT 667
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+ VFD MP R++ +W +++ GY + +AL +F +M + P T +
Sbjct: 668 AQIVFDNMPQRNAVSWTSLMTGYGMHGRGE-----DALRVFDEM--RKVPLVPDGITFLV 720
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSR 279
VL S G+++ G M K F + PE+ +VD++ + G L A+ + +
Sbjct: 721 VLYACSHSGMVDHGINFFNRMSKDFGVDPGPEH----YACMVDLWGRAGRLGEAMKLINE 776
Query: 280 M-REKNVLTWTAMATGMAIH 298
M E + W A+ + +H
Sbjct: 777 MPMEPTPVVWVALLSACRLH 796
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 28/376 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKR----------GFMFNVLVATTLIHFYASN 157
T + L +CA SL G +IH + K G +++V LI Y+
Sbjct: 410 TIISVLSACA---SLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 466
Query: 158 KDISSGKKVFDQMPM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ + + +FD +P+ R+ TW MI G+ +Q + D AL LF +M+ + GV P
Sbjct: 467 RSFKAARSIFDDIPLEERNVVTWTVMIGGH-AQYGDSND----ALKLFVEMISEPYGVAP 521
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T+ C+L + L + G +H Y+ + + F+ L+DMYSKCG +D A
Sbjct: 522 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARH 581
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M +K+ ++WT+M TG +HG+G+EA+ + D MR G P+ +TF + AC H G+
Sbjct: 582 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 641
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++GL FD+M + +G+ P +HY+C +DLL R+G L++A+ + +P++P A++W +LL
Sbjct: 642 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALL 701
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
SAC VH +V L E L+++ E + +SNIYA+A RW DV +R
Sbjct: 702 SACRVHSNVELAEHALNKLVEMNAE--------NDGSYTLISNIYATAGRWKDVARIRHL 753
Query: 456 MKVKRVETEPGSSILQ 471
MK ++ PG S +Q
Sbjct: 754 MKKSGIKKRPGCSWVQ 769
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 151/343 (44%), Gaps = 53/343 (15%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D + V L +C SL + +++H + + G +V V LI YA + +
Sbjct: 271 DIISIVNILPACG---SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAV 327
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKK-------------------------------AK 193
KVF+ M + +WNAM+ GY SQS +
Sbjct: 328 KVFNMMEFKDVVSWNAMVAGY-SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQR 386
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY--------MEK 245
C+ AL LFR M+ SG P T++ VLS + LG G +H Y ++
Sbjct: 387 GCSHEALNLFRQMIF--SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDN 444
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWTAMATGMAIHGKGNE 303
F + D+ + AL+DMYSKC A IF + E+NV+TWT M G A +G N+
Sbjct: 445 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 504
Query: 304 AIRLLDSM--RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHY 359
A++L M GV PNA T + + AC H + G +H + ++ +
Sbjct: 505 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV-A 563
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+C++D+ + G ++ A + + K AI W S+++ +HG
Sbjct: 564 NCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG 605
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 157/370 (42%), Gaps = 42/370 (11%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKA---SPQS--- 58
P H FA L LK + + + QIH Q+I + L S P + L SP+S
Sbjct: 44 PSH--FASL-LKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGT 100
Query: 59 -----------TKIVHFVFTHFDPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTF 104
T V P +N LIR Q DS + + + +
Sbjct: 101 GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP 160
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT L +C L + G H + GF NV + L+ Y+ +
Sbjct: 161 DHFTLPHVLKACGE---LPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217
Query: 165 KVFDQMPMRS---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT--- 218
+FD++ R +WN++++ + S A+ AL LF M + V KPT+
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSN-----AWTALDLFSKMTLIVHE-KPTNERSD 271
Query: 219 --TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
++V +L L + VHG + P DVF+G AL+D Y+KCG ++NA+ +
Sbjct: 272 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFP--DVFVGNALIDAYAKCGLMENAVKV 329
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F+ M K+V++W AM G + G A L +MR + + VT+T++ A G
Sbjct: 330 FNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCS 389
Query: 337 EEGLHLFDNM 346
E L+LF M
Sbjct: 390 HEALNLFRQM 399
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 201/344 (58%), Gaps = 17/344 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G ++H + GF +V V ++LI YA+ KVFD +P+R WN+++ G C+
Sbjct: 190 GSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAG-CA 248
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
Q+ ++ AL +FR ML +GV+P T ++ V L L FG +H Y+ +
Sbjct: 249 QNGSVEE----ALGIFRRMLQ--TGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGG 302
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E++VFI ++L+DMY KCG + A IF RM +V++WTAM G A+HG EA+ L
Sbjct: 303 F--EDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYALHGPAREALVL 360
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M KPN +TF ++ AC HAGLV++G F +M +G+ P ++H + + D+LG
Sbjct: 361 FERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTLEHCAALADILG 420
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L+EAYNFI + IKP A +W +LL AC VH + L E+V K +++L+P
Sbjct: 421 RAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPR------- 473
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ V LSN+Y+++ RW + +RK M+ K ++ +P S ++
Sbjct: 474 -SIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIE 516
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 149/310 (48%), Gaps = 33/310 (10%)
Query: 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY----------------- 154
AL SCA +L LG +H + G + A L++ Y
Sbjct: 57 ALKSCA---ALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVG 113
Query: 155 --ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
S+ + S +KVFD+M R +WN ++ G C++ + + ALVL R M + G
Sbjct: 114 GTGSSTALESVRKVFDEMIERDVVSWNTLVLG-CAEEGRHHE----ALVLVRKMWRE--G 166
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
+P T+ VL + ++ ++ G+ VHG+ + + +NDVF+G++L+DMY+ C D
Sbjct: 167 FRPDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGF--DNDVFVGSSLIDMYANCTRTDY 224
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
++ +F + ++ + W ++ G A +G EA+ + M GV+P VTF+SL C +
Sbjct: 225 SVKVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCGN 284
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
+ G L + + G E ++ S ++D+ + G + A++ I PD + W
Sbjct: 285 LASLRFGKQLHAYVI-RGGFEDNVFISSSLIDMYCKCGEISIAHH-IFDRMCSPDVVSWT 342
Query: 393 SLLSACNVHG 402
+++ +HG
Sbjct: 343 AMIMGYALHG 352
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 31/255 (12%)
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+A+ LF M + ++ L + LGL GA +H ++ D F
Sbjct: 32 DAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFA--DRFTA 89
Query: 258 TALVDMYSKCGC-------------------LDNALLIFSRMREKNVLTWTAMATGMAIH 298
AL+++Y K C L++ +F M E++V++W + G A
Sbjct: 90 NALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEE 149
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTS---LFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
G+ +EA+ L+ M G +P++ T +S +FA C E +H F + G +
Sbjct: 150 GRHHEALVLVRKMWREGFRPDSFTLSSVLPIFAECADVKRGSE-VHGF---AVRNGFDND 205
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+ S ++D+ + + +P++ D ILW S+L+ C +G V E +G
Sbjct: 206 VFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DPILWNSVLAGCAQNGSVE--EALGIFRR 262
Query: 416 QLQPEVTFVDVACTS 430
LQ V V V +S
Sbjct: 263 MLQTGVRPVPVTFSS 277
>gi|242058803|ref|XP_002458547.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
gi|241930522|gb|EES03667.1| hypothetical protein SORBIDRAFT_03g035530 [Sorghum bicolor]
Length = 483
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 224/410 (54%), Gaps = 29/410 (7%)
Query: 65 VFTHFDPPNLFLFNTLIRCTP--PQDSVL-VFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
+F P++F+FN+L+R P P S L +F +++ G+ + +T+ L S +
Sbjct: 78 LFASLPRPHVFVFNSLLRSLPAAPACSPLPLFRHFIGLGVRP-NRYTFPLMLTSLSSLHE 136
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-NKDISSGKKVFDQMPMRSSATWNA 180
LS +H V K GF ++ V L+ YA+ + D+ +++FD+MP W
Sbjct: 137 LSA------VHSQVAKSGFARDLHVRNALLASYAACDPDLGHAEQLFDEMPSPDVVAWTT 190
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI Y ++ + +F+AL FR M + V P TMV L + G ++ G +H
Sbjct: 191 MITAYRNRGR-----SFHALSTFRRMFA--ASVAPNRVTMVSALGACAAHGAVDTGIWIH 243
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y++K + E DV +GTALVDMY KCG + + +FS M E+NV TW ++ A+
Sbjct: 244 QYVQKQGW--ELDVVLGTALVDMYGKCGHVVEGVRVFSEMTERNVCTWNSIIGAFALEQN 301
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHY 359
G A+R M+ GV+P+AVT + AC HAGLV+ G +F+ + + K+G +P IKH+
Sbjct: 302 GEMALRWFYRMKADGVRPDAVTLICVLYACTHAGLVDIGRKIFNLIVQGKYGFQPGIKHF 361
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C++DLL R+GHL++A+ + +P +PDA++W LL C V GD L E V L++L+P
Sbjct: 362 GCMIDLLSRSGHLDDAFRVLEAMPSQPDAVIWGLLLQGCKVRGDTDLSEYVTMRLVELEP 421
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
+ +V L+N+YA RW + E V K MK K + + G S+
Sbjct: 422 G--------NASHYVTLANLYAETGRWLEAEEVLKGMKEKGLAKDAGWSL 463
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 204/365 (55%), Gaps = 25/365 (6%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+T+ LG+C L+ +H K G +V V ++LI Y D+ G++V
Sbjct: 172 YTFSSVLGACTTPGMLTA------VHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRV 225
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+M R WN++I G+ A+ LF M + +G T+ VL
Sbjct: 226 FDEMVTRDLVVWNSIIAGFAQSGD-----GVGAIELF--MRMKDAGFSSNQGTLTSVLRA 278
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ + +LE G VH ++ K + D+ + AL+DMY KCG L++A +F RM +++V+
Sbjct: 279 CTGMVMLEAGRQVHAHVLKY----DRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVI 334
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W+ M +G+A +GK EA+R+ D M+ GV PN VT + AC HAGLVE+G H F +M
Sbjct: 335 SWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSM 394
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K +G++P +H++C+VDLLGRAG L+EA FI G+ ++PD+++WR+LL AC +H + +L
Sbjct: 395 KRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASL 454
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
+ +L+L+P+ V LSN YA +W D E K M+ + + EPG
Sbjct: 455 AAYAAREILKLEPD--------DQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPG 506
Query: 467 SSILQ 471
S ++
Sbjct: 507 RSWIE 511
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 34/287 (11%)
Query: 128 GRQIHVHVTKRGFM-----FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
GR IH HV G + + V+ +L YA + ++FD MP+R+ TW ++
Sbjct: 83 GRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVV 142
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
S + ++ + + RD GV P T VL + G+L VH
Sbjct: 143 AALASADGRKQEALRFLVAMRRD------GVAPNAYTFSSVLGACTTPGML---TAVHAS 193
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
K ++DVF+ ++L+D Y K G LD +F M ++++ W ++ G A G G
Sbjct: 194 TVKAGL--DSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGV 251
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY--- 359
AI L M+D G N T TS+ AC ++E G V H+ Y
Sbjct: 252 GAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQ----------VHAHVLKYDRD 301
Query: 360 ----SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ ++D+ + G LE+A +P + D I W +++S +G
Sbjct: 302 LILHNALLDMYCKCGSLEDADALFHRMPQR-DVISWSTMVSGLAQNG 347
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 231 GLLEFGACVHGYMEKTFYMPEND---VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
G + G +H ++E +P + +F+ +L MY+K G LD+AL +F M +NV+T
Sbjct: 78 GTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVT 137
Query: 288 WTAMATGMA-IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
WT + +A G+ EA+R L +MR GV PNA TF+S+ AC G+ L
Sbjct: 138 WTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGM----LTAVHAS 193
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
K G++ + S ++D + G L+ + + D ++W S+++ GD
Sbjct: 194 TVKAGLDSDVFVRSSLIDAYVKLGDLDGGRR-VFDEMVTRDLVVWNSIIAGFAQSGD 249
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 119/289 (41%), Gaps = 22/289 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L A TTP + +HA + L S + + LI Y + VF +
Sbjct: 178 LGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRR----VFDEMVTRD 233
Query: 74 LFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQI 131
L ++N++I D V ++ F + L S R C+ + L GRQ+
Sbjct: 234 LVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS--SNQGTLTSVLRACTGMVMLEAGRQV 291
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H HV K + ++++ L+ Y + +F +MP R +W+ M++G K
Sbjct: 292 HAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGK- 348
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-P 250
+ AL +F L+ GV P TMV VL S GL+E G M++ F + P
Sbjct: 349 ----SVEALRVFD--LMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQP 402
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
E + +VD+ + G LD A+ M E + + W + +H
Sbjct: 403 EREHH--NCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMH 449
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 240/456 (52%), Gaps = 38/456 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+QIH+ I N +S +Y LI +Y + ++ KI+ + + ++ + ++I
Sbjct: 366 EQIHSLSIKNGFESD-MYVSGVLIDMYSKYRCLDKARKILEML----EKRDVVSWTSMIA 420
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYV------FALGSCARFCS-LSTLWLGRQIHVHV 135
D + + L TF + L S A C+ + + G QIH V
Sbjct: 421 GYVQHD-------FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
G+ ++ + TL++ YA +F ++ + TWN +I+G+ QS+ +
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGF-GQSRLYE-- 530
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL++F M + +G K T + +S + L ++ G VHG KT + E +V
Sbjct: 531 --QALMVF--MKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV- 585
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
AL+ +Y KCG +++A +IFS M +N ++W + T + HG+G EA+ L D M+ G
Sbjct: 586 -ANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEG 644
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KPN VTF + AAC H GLVEEGL F +M + +G+ P HY+C+VD+LGRAG L+ A
Sbjct: 645 LKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRA 704
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
F+ +PI +A++WR+LLSAC VH ++ +GE K LL+L+P S +V
Sbjct: 705 RRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH--------DSASYVL 756
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSN YA +W + + VRK MK + + EPG S ++
Sbjct: 757 LSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIE 792
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 169/378 (44%), Gaps = 24/378 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+ IHAQ+ A S LI LY S K+ VF + FNTLI
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYL----GFGSFKLAERVFCDMLFCDRVTFNTLISG 219
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+C + ++ +F GL D T L +CA S+ L G+Q+H ++ K G
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRP-DCVTVASLLAACA---SVGDLQKGKQLHSYLLKAG 275
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F+ + +L+ Y DI + +F+ + WN M+ Y S AK +
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAK-----S 330
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+F M +G+ P T C+L + G +E G +H K + E+D+++
Sbjct: 331 FEIFGQM--QATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF--ESDMYVSGV 386
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMYSK CLD A I + +++V++WT+M G H EA+ M+DCGV P+
Sbjct: 387 LIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPD 446
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+ S +AC + +GL + + G I ++ +V+L R G EEA++
Sbjct: 447 NIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLF 505
Query: 380 MGIPIKPDAILWRSLLSA 397
I K D I W L+S
Sbjct: 506 REIDHK-DEITWNGLISG 522
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 147/314 (46%), Gaps = 21/314 (6%)
Query: 112 ALGSCARFCSLS------TLW-LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
ALGS C+L W L +IH RG + L+ LI YA N + +
Sbjct: 39 ALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQAR 98
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VF ++ R +W AM++GY +Q K+ A L+ M + V PT + VL
Sbjct: 99 QVFKELSSRDHVSWVAMLSGY-AQRGLGKE----AFRLYSQM--HWTAVIPTPYVLSSVL 151
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++ L G +H + K + E F+G AL+ +Y G A +F M +
Sbjct: 152 SACTKGKLFAQGRMIHAQVYKQAFCSE--TFVGNALIALYLGFGSFKLAERVFCDMLFCD 209
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+T+ + +G A G G A+++ D M+ G++P+ VT SL AAC G +++G L
Sbjct: 210 RVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHS 269
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+ K G+ ++DL + G +E A++ I + + + +LW +L A +G +
Sbjct: 270 YLL-KAGMSFDYITEGSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLMLVA---YGQI 324
Query: 405 ALGEKVGKILLQLQ 418
+ K +I Q+Q
Sbjct: 325 SDLAKSFEIFGQMQ 338
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 200/341 (58%), Gaps = 20/341 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T++ YA+N ++ + + +F++MP R+ +WNA+I GY F L
Sbjct: 105 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG-----LFFEVLGS 159
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F+ ML + S V P D T+V VLS ++LG L+ G VH Y E + + +V++G AL+D
Sbjct: 160 FKRMLSE-SDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL--KGNVYVGNALMD 216
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY+KCG ++NA+ +F M K++++W + G+A+H +G +A+ L M++ G KP+ +T
Sbjct: 217 MYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGIT 276
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + AC H GLVE+G F +M + + P I+HY C+VD+L RAG LE+A F+ +
Sbjct: 277 FIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKM 336
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++ D ++W LL AC ++ +V L E + L++L+P+ ++V LSNIY
Sbjct: 337 PVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPK--------NPANYVMLSNIYGD 388
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT----THYTLD 479
A RW DV ++ M+ + PG S+++ Y+LD
Sbjct: 389 AGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLD 429
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 134/290 (46%), Gaps = 27/290 (9%)
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYC-SQSKKAKDCA-FNALVLFRDMLVDVSGVKPTD 217
++ +++FDQ+P + A WN+M GY S+S + C F V+ +++ +
Sbjct: 1 MTYARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADL 60
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYME--------KTFY-MPENDVFIGTALVDMYSKCG 268
+ + ++ + ++ + V GY+E K F+ MP DV ++ Y+ G
Sbjct: 61 VSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNG 120
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLF 327
++ +F M E+N+ +W A+ G A +G E + M + V PN T ++
Sbjct: 121 NVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVL 180
Query: 328 AACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+AC G ++ G +H++ G++ ++ + ++D+ + G +E A + G+ K
Sbjct: 181 SACARLGALDLGKWVHVY---AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTK 237
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQL-----QPE-VTFVDVACT 429
D I W +L+ +H + G + Q+ +P+ +TF+ + C
Sbjct: 238 -DLISWNTLIGGLAMH---SRGADALNLFFQMKNAGQKPDGITFIGILCA 283
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 18/244 (7%)
Query: 54 ASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTY 109
A+ + + + +F N+F +N LI + + F +S+ + +D T
Sbjct: 117 ATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 176
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
V L +CAR +L LG+ +HV+ G NV V L+ YA I + VF
Sbjct: 177 VTVLSACARLGALD---LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRG 233
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
M + +WN +I G S+ A +AL LF M +G KP T + +L +
Sbjct: 234 MDTKDLISWNTLIGGLAMHSRGA-----DALNLFFQM--KNAGQKPDGITFIGILCACTH 286
Query: 230 LGLLEFG-ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLT 287
+GL+E G A + MP+ + + +VDM ++ G L+ A+ +M E + +
Sbjct: 287 MGLVEDGFAYFQSMADDYLIMPQIEHY--GCMVDMLARAGRLEQAMAFVRKMPVEADGVI 344
Query: 288 WTAM 291
W +
Sbjct: 345 WAGL 348
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/409 (33%), Positives = 231/409 (56%), Gaps = 27/409 (6%)
Query: 69 FDPPNLFLF------NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
++ P L +F N L+ P +++ V V + + +D+ TYV A G C+ L
Sbjct: 188 YEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDE-CIVWDNVTYVTAFGLCSH---L 243
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
L LG Q+H + + G ++ V++ +I Y +I + +KVF+++ ++ +W A++
Sbjct: 244 KDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAIL 303
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
Y C AL F +M VD G+ P + T +L+ + + L G +H
Sbjct: 304 AAYSQNG-----CFEEALNFFPEMEVD--GLLPNEYTFAVLLNSCAGISALGHGKLLHTR 356
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
++K+ + E+ + +G AL++MYSK G ++ A +F M ++ +TW+AM G++ HG G
Sbjct: 357 IKKSGF--EDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGR 414
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EA+ + M P+ VTF + +AC H G V+EG + + + + G+EP ++HY+CI
Sbjct: 415 EALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCI 474
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
V LL +AG L+EA NF+ P+K D + WR+LLSAC+VH + LG+KV +++LQ+ P
Sbjct: 475 VGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPG-- 532
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
DV ++ LSN+YA A+RW V +RK M+ + V+ EPG+S ++
Sbjct: 533 --DVG----TYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIE 575
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 131/281 (46%), Gaps = 12/281 (4%)
Query: 124 TLWLGRQIHVH--VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L G+ IH H +T + N++ +LI+ YA I + +FD M R+ +W A+
Sbjct: 40 NLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGAL 99
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+ GY L LF+ M + V ++P + ++S S G + G HG
Sbjct: 100 MAGYFHNG-----LVLEVLRLFKTM-ISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHG 153
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y K+ + ++ AL+ MYS+ + A+ ++ + +V ++ + G+ +G
Sbjct: 154 YALKSGLVFHQ--YVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYP 211
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+EA+ +LD M D + + VT+ + F C H + GL + M + G E S
Sbjct: 212 SEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRM-FRTGAEYDSFVSSA 270
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
I+D+ G+ G++ A + K + + W ++L+A + +G
Sbjct: 271 IIDMYGKCGNILNARKVFNRLQTK-NVVSWTAILAAYSQNG 310
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+L VS+ L+FG +H ++ T ++++ +L+++Y+KC + A ++F MR+
Sbjct: 31 LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEG 339
+NV++W A+ G +G E +RL +M ++PN F ++ ++C +G V EG
Sbjct: 91 RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 231/427 (54%), Gaps = 20/427 (4%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF 104
L+ +Y K + ++ H + + L + C ++ +F + +G+
Sbjct: 245 LLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFL 304
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ AL CA SL+ L +G Q+H + K G ++ +L+ YA I+
Sbjct: 305 SATSVASALRVCA---SLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEAT 361
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD++ ++ + ++ A+++GY Q+ KA++ A ++F+ M V+P TMV ++
Sbjct: 362 MLFDEIAIKDTISYGALLSGYV-QNGKAEE----AFLVFKKM--QACNVQPDIATMVSLI 414
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S L L+ G C HG + E I +L+DMY+KCG +D + +F +M ++
Sbjct: 415 PACSHLAALQHGRCSHGSVIIRGLALETS--ICNSLIDMYAKCGRIDLSRQVFDKMPARD 472
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+++W M G IHG G EA L SM++ G +P+ VTF L AAC H+GLV EG H FD
Sbjct: 473 IVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFD 532
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M K+G+ P ++HY C+VDLL R G L+EAY FI +P+K D +W +LL AC +H ++
Sbjct: 533 TMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNI 592
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG++V +++ +L PE T +FV LSNI+++A R+ + VR KVK +
Sbjct: 593 DLGKQVSRMIQKLGPEGT--------GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKS 644
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 645 PGCSWIE 651
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 164/370 (44%), Gaps = 45/370 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTF----DDFTYVFALGSC 116
VF P+ +N LIR P ++ ++ + +L F + +T+ F L +C
Sbjct: 55 VFDRIPAPDARAYNALIRAYSWRGPFHAAIDLY-----RSMLYFRVPPNKYTFPFVLKAC 109
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
+ +L+ L GR IH H G ++ V+T LI Y VF +MPMR
Sbjct: 110 S---ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVV 166
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WNAM+ GY + +A+ DM D G++P +T+V +L + +Q G L G
Sbjct: 167 AWNAMLAGYANHGMY-----HHAIAHLLDM-QDRGGLRPNASTLVSLLPLLAQHGALFQG 220
Query: 237 ACVHGYMEKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
VH Y + + E V IGTAL+DMY+KC L A +F M +N +TW+A+ G
Sbjct: 221 TSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280
Query: 296 AIHGKGNEAIRLLDSMRDCGV-KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ + EA L M G+ +A + S C + G L + +K G+
Sbjct: 281 VLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQL-HALLAKSGIHA 339
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS------------------ 396
+ + ++ + +AG + EA I IK D I + +LLS
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSGYVQNGKAEEAFLVFKKM 398
Query: 397 -ACNVHGDVA 405
ACNV D+A
Sbjct: 399 QACNVQPDIA 408
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 15/248 (6%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSG 212
+ + ++ ++VFD++P + +NA+I Y + F+A + L+R ML
Sbjct: 43 HIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGP------FHAAIDLYRSMLY--FR 94
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V P T VL S L L G +H + D+F+ TAL+D+Y +C
Sbjct: 95 VPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGL--HTDLFVSTALIDLYIRCARFGP 152
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI-RLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F++M ++V+ W AM G A HG + AI LLD G++PNA T SL
Sbjct: 153 AANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLA 212
Query: 332 HAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
G + +G +H + E + + ++D+ + HL A G+ ++ + +
Sbjct: 213 QHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEV 271
Query: 390 LWRSLLSA 397
W +L+
Sbjct: 272 TWSALIGG 279
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 195/329 (59%), Gaps = 17/329 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV T+I YA N DI+ + FD+MP R S +W A+I GY +QS ++ AL L
Sbjct: 327 NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGY-AQSGYGEE----ALHL 381
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M D G + +T LS +++ LE G VHG + K E+ ++G AL+
Sbjct: 382 FVEMKRD--GERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL--ESGCYVGNALLV 437
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG +D+A ++F + EK V++W M G A HG G EA+ L +SM+ G+ P+ VT
Sbjct: 438 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 497
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ +AC H GLV++G F +M +G+ + KHY+C++DLLGRAG L++A N + +
Sbjct: 498 MVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 557
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P +PDA W +LL A +HG+ LGEK K++ +++P+ S +V LSN+YA+
Sbjct: 558 PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPD--------NSGMYVLLSNLYAA 609
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ RW DV +R +M+ + V+ PG S ++
Sbjct: 610 SGRWGDVGRMRLRMRDRGVKKVPGYSWVE 638
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ L +CA +L LG+Q+H V K G V L+ Y +I VF
Sbjct: 396 TFTSTLSTCAEIAALE---LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 452
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ + + +WN MI GY AL+LF M +G+ P D TMV VLS
Sbjct: 453 EGIEEKEVVSWNTMIAGYARHG-----FGKEALMLFESM--KKTGILPDDVTMVGVLSAC 505
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVL 286
S GL++ G M + + + N T ++D+ + G LD+A + M E +
Sbjct: 506 SHTGLVDKGTEYFYSMTQDYGITANSKHY-TCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 564
Query: 287 TWTAMATGMAIHGK---GNEAIRLLDSMR--DCGVKPNAVTFTSLFAACCHAGLV 336
TW A+ IHG G +A +++ M + G+ V ++L+AA G V
Sbjct: 565 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM---YVLLSNLYAASGRWGDV 616
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 120/274 (43%), Gaps = 38/274 (13%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
Y + + +FD+MP R +WN MI+GY A N +L L + S V
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGY----------AQNGELLEAQRLFEESPV 263
Query: 214 KPTDTTMVCVLSVSSQLGLLE----------------FGACVHGYME-------KTFY-- 248
+ T ++S Q G+L+ + A + GY++ + +
Sbjct: 264 RDV-FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 322
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP +V ++ Y++ G + A F RM +++ ++W A+ G A G G EA+ L
Sbjct: 323 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ G + N TFTS + C +E G + + K G+E + ++ + +
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV-VKAGLESGCYVGNALLVMYCK 441
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G++++AY GI K + + W ++++ HG
Sbjct: 442 CGNIDDAYIVFEGIEEK-EVVSWNTMIAGYARHG 474
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/389 (20%), Positives = 166/389 (42%), Gaps = 71/389 (18%)
Query: 74 LFLFNTLIRCTPPQDSVLVFA------YWVSKGLL----TFDDFTYVFALGSCARFCSLS 123
L LFN++ R + + ++ +++++ L T D ++ + C R+ +L
Sbjct: 69 LRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLR 128
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
R + + +R +V+ ++ YA N + K++FD+MP ++S +WN M+
Sbjct: 129 A---ARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLA 181
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
Y Q+ + +D A LF + L+ + + GY+
Sbjct: 182 AYV-QNGRIED----ARRLFES---------------------KADWELISWNCMMGGYV 215
Query: 244 EKTF---------YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
++ MPE D ++ Y++ G L A +F ++V TWTAM +G
Sbjct: 216 KRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSG 275
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+G +EA R+ D M + N+V++ ++ A +++ LF+ M +
Sbjct: 276 YVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQ----- 326
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
++ ++ ++ + G + +A NF +P + D+I W ++++ + GE+ +
Sbjct: 327 NVSSWNTMITGYAQNGDIAQARNFFDRMP-QRDSISWAAIIAG---YAQSGYGEEALHLF 382
Query: 415 LQLQPE------VTFVDVACTSEDFVALS 437
++++ + TF T + AL
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALE 411
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 58/254 (22%)
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
N S ++F+ MP RSS +WNAMI+G S K L R +
Sbjct: 62 NGQCDSALRLFNSMPRRSSISWNAMISGCLSNDK---------FYLARQLF--------- 103
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
EK MP D+ ++ + L A L+
Sbjct: 104 ---------------------------EK---MPTRDLVSWNVMISGCVRYRNLRAARLL 133
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F +M E++V++W AM +G A +G EA + D M C N++++ + AA G +
Sbjct: 134 FDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM-PC---KNSISWNGMLAAYVQNGRI 189
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
E+ LF++ K+ W + ++C++ + L +A +P + D + W +++S
Sbjct: 190 EDARRLFES-KADW----ELISWNCMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMIS 243
Query: 397 ACNVHGDVALGEKV 410
+G++ +++
Sbjct: 244 GYAQNGELLEAQRL 257
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM--RDCGVKPNAVTF 323
+ G D+AL +F+ M ++ ++W AM +G + K A +L + M RD V++
Sbjct: 61 RNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDL------VSW 114
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ + C + LFD M E + ++ ++ + G+++EA +P
Sbjct: 115 NVMISGCVRYRNLRAARLLFDQMP-----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMP 169
Query: 384 IKPDAILWRSLLSACNVHGDV 404
K ++I W +L+A +G +
Sbjct: 170 CK-NSISWNGMLAAYVQNGRI 189
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 257/469 (54%), Gaps = 31/469 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L+ T +H+ Q+H+ ++ A +P L +Q I + S + ++V P
Sbjct: 9 LQRSKTTTHLLQLHSLILKTAKDHNPDLISQFI--FSISSVSIEFARLVFDRLPIRAP-- 64
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+F +N++IR + P ++V +F+ GL D+FTY F + +C R + G
Sbjct: 65 IFAWNSIIRAYTKSSVPIEAVKLFSQMQRVGLKP-DNFTYPFVVKACGRSLVVGA---GG 120
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+H + K GF + V TL+ YA+ + ++VF++M +R +W++MI GY
Sbjct: 121 AMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYV--- 177
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
A +C +AL++FR M++ + KP T+V +LS ++L + G +H Y+
Sbjct: 178 --ACNCQADALMVFRHMML--ANEKPNSVTLVSLLSACTRLLNIGVGESIHSYI--IVNC 231
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
DV +GTA+++MYSKCG ++ AL +F+ + EKN+ +WT M +G+A H G +AI L
Sbjct: 232 IGLDVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFT 291
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M G++P++++F+ + +AC H GLV+EG F M + + P ++HY C+VD+ RA
Sbjct: 292 QMEQTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARA 351
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV-ALGEKVGKILLQLQPEVTFVDVAC 428
G +EEAY I +P++P++++ RS + AC G V E + ++LL+++P++
Sbjct: 352 GMIEEAYEIIKNMPMEPNSVILRSFIGACRNDGRVFGFDENLRRLLLEIEPDL------- 404
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477
++V S + + + W + +R MK K ++ PG S ++ + +T
Sbjct: 405 -GANYVLASGVSSLSGCWNEAADLRVSMKEKGLKKVPGWSRVEVSGSHT 452
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 208/368 (56%), Gaps = 19/368 (5%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-GFMFNVLVATTLIHFYASNKDISSGK 164
D + +L S A L R IH VT+R F+ ++ + +I YA I S +
Sbjct: 340 DLLTLVSLASVA--AELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR 397
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVF+ +P++ +WN++I GY SQ+ A + A+ ++ M SG P T V +L
Sbjct: 398 KVFEGLPVKDVISWNSLITGY-SQNGLANE----AIDVYSSMRY-YSGAVPNQGTWVSIL 451
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ SQLG L+ G HG + K F D+F+ T LVDMY KCG L +AL +F + ++
Sbjct: 452 TAHSQLGALKQGMKAHGQLIKNFLYF--DIFVSTCLVDMYGKCGKLADALSLFYEVPHQS 509
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W A+ + +HG G +A++L M+ GVKP+ +TF SL +AC H+GLV+EG F
Sbjct: 510 SVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQ 569
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ +G+ P +KHY C+VDL GRAGHLE+A+NF+ +P++PD +W +LL AC +H +V
Sbjct: 570 LMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENV 629
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L V LL+++ E +V LSNIYA W V+ VR + + ++
Sbjct: 630 ELVRTVSDHLLKVESE--------NVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKT 681
Query: 465 PGSSILQT 472
PG S ++
Sbjct: 682 PGWSSIEV 689
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 151/326 (46%), Gaps = 21/326 (6%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
L +Q+H + G ++ ++ LI+ YA DI + FDQ+ + TWN+MI+ Y
Sbjct: 58 LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAY- 116
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
A+ F+A V + + S ++ T V+ G L+ G VH + K
Sbjct: 117 -----ARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKL 168
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ E DV+I + + YS+ G + A +F M +++ TW AM +G ++GK EA+
Sbjct: 169 GF--ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ D MR V ++VT +SL C + G+ L K G+E + + ++++
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGV-LIHVYAIKLGLEFDLFVCNALINMY 285
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC--NVHGDVALG-----EKVGKILLQLQP 419
+ G L A + ++ D + W SLL+A N +ALG +G ++ L
Sbjct: 286 AKFGELRSAETIFNQMKVR-DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIG-VVPDLLT 343
Query: 420 EVTFVDVACTSEDFVALSNIYASAER 445
V+ VA +F++ +I+ R
Sbjct: 344 LVSLASVAAELGNFLSSRSIHGFVTR 369
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/378 (34%), Positives = 202/378 (53%), Gaps = 47/378 (12%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP------------- 171
L LGR +H + K + VAT L+ YA D + + +FD+MP
Sbjct: 146 LALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTC 205
Query: 172 ------------------MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
+ WNAMI+GY + + AL LFR ML SGV
Sbjct: 206 YAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNE-----ALRLFRWMLR--SGV 258
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
P + ++ LS +QLG E G +H Y++ + + N +GTAL+DMY KCG L++A
Sbjct: 259 DPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLN-ARVGTALIDMYCKCGSLEDA 317
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F+ + +K+++ W AM G A+HG +A+ + +R G+ P +TF L AC H+
Sbjct: 318 VSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHS 377
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLV+EG F +M+ ++ + P I+HY C+VDLLGRAG +EEA++ + + I PD ++W S
Sbjct: 378 GLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVS 437
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL+AC +H ++ALG+++ L+ S ++ LSNIYA+ W +V VR
Sbjct: 438 LLAACRLHKNMALGQQIADYLV--------AGGLANSGMYILLSNIYAAVGNWEEVARVR 489
Query: 454 KQMKVKRVETEPGSSILQ 471
MK ++ EPG S ++
Sbjct: 490 SMMKASGIQKEPGCSAIE 507
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 142/351 (40%), Gaps = 55/351 (15%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
+TL ++H + G + V L YA++ + + P ++ + + I
Sbjct: 46 ATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAI 105
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+ + S+ A + +L R G+ PT T+ L L L G +H Y
Sbjct: 106 HAHSSRGLHLAALALLSEMLGR-------GLIPTSHTLSSSLPACHGLAL---GRALHAY 155
Query: 243 MEKTFYMPENDVFIGTALVDM-------------------------------YSKCGCLD 271
K D ++ TAL+ M Y+K G LD
Sbjct: 156 AFKLAL--AGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 213
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+A +F M K+ + W AM G HG+ NEA+RL M GV P+ V +A
Sbjct: 214 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 273
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
G E G L +K+ V+ + + + ++D+ + G LE+A + I K D ++W
Sbjct: 274 QLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDK-DIVVW 332
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFV 434
++++ +HGD K ++ QL+ + +TF+ + AC+ V
Sbjct: 333 NAMINGYAMHGD---SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLV 380
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 28/300 (9%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV-TKRGFMFNV 144
P +++ +F W+ + + D+ + AL + A+ L T GR +H +V R N
Sbjct: 243 PNEALRLF-RWMLRSGVDPDEVAIILALSAVAQ---LGTAESGRWLHSYVKNSRRVQLNA 298
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
V T LI Y + VF+ + + WNAMINGY K AL +F
Sbjct: 299 RVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK-----ALEMFS 353
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
+ G+ PTD T + +L+ S GL++ G ME+ + + G +VD+
Sbjct: 354 QL--RSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYG-CMVDLL 410
Query: 265 SKCGCLDNAL-LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA--V 321
+ G ++ A L+ S + + W ++ +H ++ D + G+ + +
Sbjct: 411 GRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYI 470
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
++++AA G EE + MK+ G++ K C +GR + Y F+ G
Sbjct: 471 LLSNIYAAV---GNWEEVARVRSMMKAS-GIQ---KEPGCSAIEVGR-----KVYEFVAG 518
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 130/378 (34%), Positives = 202/378 (53%), Gaps = 47/378 (12%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP------------- 171
L LGR +H + K + VAT L+ YA D + + +FD+MP
Sbjct: 145 LALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTC 204
Query: 172 ------------------MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
+ WNAMI+GY + + AL LFR ML SGV
Sbjct: 205 YAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNE-----ALRLFRWMLR--SGV 257
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
P + ++ LS +QLG E G +H Y++ + + N +GTAL+DMY KCG L++A
Sbjct: 258 DPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLN-ARVGTALIDMYCKCGSLEDA 316
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F+ + +K+++ W AM G A+HG +A+ + +R G+ P +TF L AC H+
Sbjct: 317 VSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHS 376
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
GLV+EG F +M+ ++ + P I+HY C+VDLLGRAG +EEA++ + + I PD ++W S
Sbjct: 377 GLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVS 436
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL+AC +H ++ALG+++ L+ S ++ LSNIYA+ W +V VR
Sbjct: 437 LLAACRLHKNMALGQQIADYLV--------AGGLANSGMYILLSNIYAAVGNWEEVARVR 488
Query: 454 KQMKVKRVETEPGSSILQ 471
MK ++ EPG S ++
Sbjct: 489 SMMKASGIQKEPGCSAIE 506
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 142/351 (40%), Gaps = 55/351 (15%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
+TL ++H + G + V L YA++ + + P ++ + + I
Sbjct: 45 ATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAI 104
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+ + S+ A + +L R G+ PT T+ L L L G +H Y
Sbjct: 105 HAHSSRGLHLAALALLSEMLGR-------GLIPTSHTLSSSLPACHGLAL---GRALHAY 154
Query: 243 MEKTFYMPENDVFIGTALVDM-------------------------------YSKCGCLD 271
K D ++ TAL+ M Y+K G LD
Sbjct: 155 AFKLAL--AGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALD 212
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+A +F M K+ + W AM G HG+ NEA+RL M GV P+ V +A
Sbjct: 213 DARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVA 272
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
G E G L +K+ V+ + + + ++D+ + G LE+A + I K D ++W
Sbjct: 273 QLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDK-DIVVW 331
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFV 434
++++ +HGD K ++ QL+ + +TF+ + AC+ V
Sbjct: 332 NAMINGYAMHGD---SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLV 379
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 28/300 (9%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV-TKRGFMFNV 144
P +++ +F W+ + + D+ + AL + A+ L T GR +H +V R N
Sbjct: 242 PNEALRLF-RWMLRSGVDPDEVAIILALSAVAQ---LGTAESGRWLHSYVKNSRRVQLNA 297
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
V T LI Y + VF+ + + WNAMINGY K AL +F
Sbjct: 298 RVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRK-----ALEMFS 352
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
+ G+ PTD T + +L+ S GL++ G ME+ + + G +VD+
Sbjct: 353 QL--RSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYG-CMVDLL 409
Query: 265 SKCGCLDNAL-LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA--V 321
+ G ++ A L+ S + + W ++ +H ++ D + G+ + +
Sbjct: 410 GRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYI 469
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
++++AA G EE + MK+ G++ K C +GR + Y F+ G
Sbjct: 470 LLSNIYAAV---GNWEEVARVRSMMKAS-GIQ---KEPGCSAIEVGR-----KVYEFVAG 517
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 19/358 (5%)
Query: 111 FALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
F L S C L LG+Q+ K G N+ V + ++ Y + ++F+Q
Sbjct: 282 FTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQ 341
Query: 170 MPMRSSATWNAMINGYCSQSKKAKD------CAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
M S TWNAMI+GY AKD F AL +FRD+ V +KP T +
Sbjct: 342 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSV--MKPDLFTFSSI 399
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LSV S + LE G +H K+ ++ +DV + +ALV+MY+KCGC+ +A F M +
Sbjct: 400 LSVCSAMMALEQGEQIHAQTIKSGFL--SDVVVNSALVNMYNKCGCIQDANKAFLEMPTR 457
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+TWT+M +G + HG+ EAI+L + MR GV+PN +TF SL +AC +AGLVEE H F
Sbjct: 458 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYF 517
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D MK ++ +EP + HY C++D+ R G +E+A++FI +P+ +W SL++ C HG+
Sbjct: 518 DMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 577
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ L LL+L+P+ E ++ L N+Y S ERW DV VRK MK + V
Sbjct: 578 MELAFYAADKLLELKPKGI--------ETYILLLNMYISTERWQDVARVRKLMKQEDV 627
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 29/297 (9%)
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
YV L C SL R +H H+ K G ++ VAT+L++ Y +++FD
Sbjct: 81 YVPLLHRCVETGSLGA---ARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFD 137
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
MP R+ TW A++ GY S+ A L +F +ML G P+ T+ L+
Sbjct: 138 GMPERNVVTWTALVTGYTLNSQPAL-----GLEVFVEML--EMGRYPSHYTLGATLNACL 190
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
++ G VHGY K Y E+ +G +L +Y+K G LD+AL F R+ EKNV+TW
Sbjct: 191 ASCDVDLGKQVHGYAIK--YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITW 248
Query: 289 TAMATGMAIHGKGNEAIRL-----LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
T M + A + E + L +D + D GV PN T TS+ + C L+L
Sbjct: 249 TTMISACA---EDEECVELGMSLFIDMLMD-GVMPNEFTLTSVMSLCG----TRLDLNLG 300
Query: 344 DNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+++ K G E ++ + + L R G +EA + I W +++S
Sbjct: 301 KQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISG 356
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+ G L VHG+M KT D+F+ T+LV+ Y +C +A +F M E+NV+TW
Sbjct: 90 ETGSLGAARAVHGHMAKTG--ASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTW 147
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
TA+ TG ++ + + + M + G P+ T + AC + V+ G +
Sbjct: 148 TALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVH-GYAI 206
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
K+G E + + L + G L+ A IP K + I W +++SAC
Sbjct: 207 KYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISAC 255
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 234/484 (48%), Gaps = 80/484 (16%)
Query: 62 VHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTF---DDFTYVFALG 114
+ VF P+ F++NTLIR P+D+V ++ + +G D T+ F L
Sbjct: 31 AYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLR 90
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS------------------ 156
+C + T G Q+H HV K G + V LI +AS
Sbjct: 91 ACTAMGAGDT---GVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRARED 147
Query: 157 -------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA----------- 192
DI + + +FD+ P++ +WN MI Y + A
Sbjct: 148 AVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPE 207
Query: 193 KDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
+D +AL LF M G KP TM+ +LS + G L+ G
Sbjct: 208 RDVVSWNVMISGYVRCGSHLHALELFEQM--QRMGEKPDIVTMLSLLSACADSGDLDVGQ 265
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+H + F V +G AL+DMY+KCG + +A +F MR+K+V TW ++ G+A+
Sbjct: 266 RLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLAL 325
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG E+I + + M V+P+ +TF ++ AC H G+V++G F+ M+ K+ VEP+IK
Sbjct: 326 HGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIK 385
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C+VD+LGRAG L+EA+ FI + +P++++WR+LLSAC VHG++ L + + LL+
Sbjct: 386 HYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKA 445
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477
+ + S D+V LSNIYAS W E +RK M V E S L H
Sbjct: 446 RND--------ESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEADSERLH---HRL 494
Query: 478 LDGF 481
L GF
Sbjct: 495 LFGF 498
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 19/358 (5%)
Query: 111 FALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
F L S C L LG+Q+ K G N+ V + ++ Y + ++F+Q
Sbjct: 282 FTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQ 341
Query: 170 MPMRSSATWNAMINGYCSQSKKAKD------CAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
M S TWNAMI+GY AKD F AL +FRD+ V +KP T +
Sbjct: 342 MEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSV--MKPDLFTFSSI 399
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LSV S + LE G +H K+ ++ +DV + +ALV+MY+KCGC+ +A F M +
Sbjct: 400 LSVCSAMMALEQGEQIHAQTIKSGFL--SDVVVNSALVNMYNKCGCIQDANKAFLEMPTR 457
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+TWT+M +G + HG+ EAI+L + MR GV+PN +TF SL +AC +AGLVEE H F
Sbjct: 458 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYF 517
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D MK ++ +EP + HY C++D+ R G +E+A++FI +P+ +W SL++ C HG+
Sbjct: 518 DMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGN 577
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ L LL+L+P+ E ++ L N+Y S ERW DV VRK MK + V
Sbjct: 578 MELAFYAADKLLELKPKGI--------ETYILLLNMYISTERWQDVARVRKLMKQEDV 627
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 136/288 (47%), Gaps = 26/288 (9%)
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R + +L R +H H+ K G ++ VAT+L++ Y +++FD MP R+ T
Sbjct: 87 RCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVT 146
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
W A++ GY S+ A L +F +ML G P+ T+ L+ ++ G
Sbjct: 147 WTALVTGYTLNSQPAL-----GLEVFVEML--EMGRYPSHYTLGATLNACLASCDVDLGK 199
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
VHGY K Y E+ +G +L +Y+K G LD+AL F R+ EKNV+TWT M + A
Sbjct: 200 QVHGYAIK--YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACA- 256
Query: 298 HGKGNEAIRL-----LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---K 349
+ E + L +D + D GV PN T TS+ + C L+L +++ K
Sbjct: 257 --EDEECVELGLSLFIDMLMD-GVMPNEFTLTSVMSLCG----TRLDLNLGKQVQAFSFK 309
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G E ++ + + L R G +EA + I W +++S
Sbjct: 310 IGCETNLPVKNSTMYLYLRKGETDEAMRLFEQME-DASIITWNAMISG 356
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 4/170 (2%)
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
++G L VHG+M KT D+F+ T+LV+ Y +CG +A +F M E+NV+TW
Sbjct: 90 EMGSLGAARAVHGHMAKTG--AGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTW 147
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
TA+ TG ++ + + + M + G P+ T + AC + V+ G +
Sbjct: 148 TALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVH-GYAI 206
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
K+G E + + L + G L+ A IP K + I W +++SAC
Sbjct: 207 KYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISAC 255
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 218/414 (52%), Gaps = 41/414 (9%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P+D++ +F + ++ + T V L +CA+ L GR + ++ ++G ++
Sbjct: 208 PEDALELFLKMERENVMP-NSVTMVGVLSACAKKLDLE---FGRWVCSYIERKGIKVDLT 263
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDCAFNA----- 199
+ ++ Y + +K+FD+MP R +W M++GY A FNA
Sbjct: 264 LCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKE 323
Query: 200 --------------------LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
L +F ++ + KP + T+V LS +QLG ++ G +
Sbjct: 324 IAAWNVLISAYEQNGKPKEALAIFNELQLS-KIAKPDEVTLVSTLSACAQLGAIDLGGWI 382
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H Y+++ + + + ++LVDMY+KCG L+ AL +F + E++V W+AM G+ +HG
Sbjct: 383 HVYIKREGIVL--NCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHG 440
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+G AI L M++ VKPN+VTFT++ AC HAGLV+EG F M+ +GV P +KHY
Sbjct: 441 RGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHY 500
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
+C+VD+LGRAG LEEA I + P A +W +LL AC++H +V LGE LL+L+P
Sbjct: 501 ACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEP 560
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
V LSNIYA RW V +RK M+ ++ EPG S ++
Sbjct: 561 R--------NHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEAN 606
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 114/456 (25%), Positives = 207/456 (45%), Gaps = 66/456 (14%)
Query: 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST-KIVHFVFTHFDPPNLFLF 77
++ +K++HA+++ L P A +L+ S ST +F PNL+ +
Sbjct: 36 SSSKQLKEVHARMLRTGLFFDPFSAS--KLFTASALSSFSTLDYARNLFDQIPQPNLYTW 93
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NTLIR + P S ++F + K + FT+ F + + + L +G +H
Sbjct: 94 NTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASE---LKASRVGTAVHG 150
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
K F ++ + +L+ FY + D+S +++F + + +WN+MI+ +
Sbjct: 151 MAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQ-----G 205
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
+C +AL LF M + V P TMV VLS ++ LEFG V Y+E+ + D
Sbjct: 206 NCPEDALELFLKM--ERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGI--KVD 261
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA----------------- 296
+ + A++DMY+KCG +D+A +F M E++V +WT M G A
Sbjct: 262 LTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPV 321
Query: 297 --------------IHGKGNEAIRLLDSMRDCGV-KPNAVTFTSLFAACCHAGLVEEG-- 339
+GK EA+ + + ++ + KP+ VT S +AC G ++ G
Sbjct: 322 KEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGW 381
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+H++ + G+ + S +VD+ + G LE+A + + D +W ++++
Sbjct: 382 IHVY---IKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEER-DVYVWSAMIAGLG 437
Query: 400 VHGDVALGEKVGKILLQLQP------EVTFVDVACT 429
+HG G+ + ++Q VTF +V C
Sbjct: 438 MHGR---GKAAIDLFFEMQEAKVKPNSVTFTNVLCA 470
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 136/425 (32%), Positives = 238/425 (56%), Gaps = 45/425 (10%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ + +RC +++V V+ ++ ++ T V L +CA L L LG++IH ++
Sbjct: 180 MISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACA---VLRNLELGKEIHDYI 236
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAK 193
++ L+ Y +S +++FD M +++ W +M+ GY C Q +A+
Sbjct: 237 ASE-LDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQAR 295
Query: 194 D--------------------CAFN----ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+ FN + LF +M + GVKP +V +L+ +Q
Sbjct: 296 NLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEM--QIRGVKPDKFIVVTLLTGCAQ 353
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
G LE G +H Y+++ + D +GTAL++MY+KCGC++ + IF+ ++EK+ +WT
Sbjct: 354 SGALEQGKWIHNYIDEN--RIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWT 411
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
++ G+A++GK +EA+ L +M+ CG+KP+ +TF ++ +AC HAGLVEEG LF +M S
Sbjct: 412 SIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSM 471
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVAL 406
+ +EP+++HY C +DLLGRAG L+EA + +P + + I L+ +LLSAC +G++ +
Sbjct: 472 YHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDM 531
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
GE++ L +++ + S L++IYASA+RW DV VR +MK ++ PG
Sbjct: 532 GERLATALAKVK--------SSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPG 583
Query: 467 SSILQ 471
S ++
Sbjct: 584 YSAIE 588
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/476 (24%), Positives = 213/476 (44%), Gaps = 68/476 (14%)
Query: 8 RCFALLK------LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
+C L+K LK+ + S +KQI A + L+ + + + +S
Sbjct: 2 QCSKLMKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAF-SMDSSLGDFNY 60
Query: 62 VHFVFTHFDPPNLFLFNTLIRCTPPQDS----VLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+ +F + P+LF++N +I+ S + +F G+ D++TY + L
Sbjct: 61 ANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWP-DNYTYPYVLKGIG 119
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ + G ++H V K G F+ V + + YA + +VF++MP R + +
Sbjct: 120 ---CIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVS 176
Query: 178 WNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WN MI+GY C + ++A D ++R M + S KP + T+V LS + L LE
Sbjct: 177 WNIMISGYVRCKRFEEAVD-------VYRRMWTE-SNEKPNEATVVSTLSACAVLRNLEL 228
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +H Y+ + +G AL+DMY KCG + A IF M KNV WT+M TG
Sbjct: 229 GKEIHDYIASELDLT---TIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGY 285
Query: 296 AIHGKGNEA-------------------------------IRLLDSMRDCGVKPNAVTFT 324
I G+ ++A I L M+ GVKP+
Sbjct: 286 VICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVV 345
Query: 325 SLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+L C +G +E+G + + + +++ V+ + + ++++ + G +E+++ G+
Sbjct: 346 TLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVG--TALIEMYAKCGCIEKSFEIFNGLK 403
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--LQP-EVTFVDV--ACTSEDFV 434
K D W S++ ++G + ++ K + L+P ++TFV V AC+ V
Sbjct: 404 EK-DTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLV 458
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 41/391 (10%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D ++ + K + D L +CAR SL G+ +H ++ N+ V
Sbjct: 196 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDN---GKDVHDYIKANNMASNLFVC 252
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
L+ YA + VF M ++ +WN M
Sbjct: 253 NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM-------------------------- 286
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
V +KP TM C+L + L LE G +HGY+ + Y +D + ALVD+Y KC
Sbjct: 287 --VGELKPDSRTMACILPACASLSALERGKEIHGYILRNGY--SSDRHVANALVDLYVKC 342
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A L+F + K++++WT M G +HG GNEAI + MRD G++P+ V+F S+
Sbjct: 343 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 402
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL+E+G F MK+ + +EP ++HY+C+VDLL R G+L +AY FI +PI PD
Sbjct: 403 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 462
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A +W +LL C ++ D+ L EKV + + +L+PE T +V L+NIYA AE+W
Sbjct: 463 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGY--------YVLLANIYAEAEKWE 514
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +R+++ K + PG S ++ L
Sbjct: 515 EVKRMREKIGKKGLRKNPGCSWIEIKGRVNL 545
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 16/255 (6%)
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+F ++V + K S ++FD++ R +WN+MI+GY S +
Sbjct: 49 LFKIMVEKGI-----EGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQ 103
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+++ + VD++ T++ VL ++ G L G VH K+ + E + L
Sbjct: 104 MMYLGIDVDLA-------TIISVLVGCAKSGTLSLGKAVHSLAIKSSF--ERRINFSNTL 154
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMYSKCG LD AL +F +M E+NV++WT+M G G + AI LL M GVK +
Sbjct: 155 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDV 214
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
V TS+ AC +G ++ G + D +K+ + ++ + ++D+ + G +E A N +
Sbjct: 215 VAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEGA-NSVF 272
Query: 381 GIPIKPDAILWRSLL 395
+ D I W +++
Sbjct: 273 STMVVKDIISWNTMV 287
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 50 CTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTF 104
C + S + K VH ++ + NLF+ N L+ +C + + VF+ V K ++++
Sbjct: 224 CARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISW 283
Query: 105 ---------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
D T L +CA SLS L G++IH ++ + G+ + VA L+ Y
Sbjct: 284 NTMVGELKPDSRTMACILPACA---SLSALERGKEIHGYILRNGYSSDRHVANALVDLYV 340
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVK 214
+ + +FD +P + +W MI GY + A FN + RD +G++
Sbjct: 341 KCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM---RD-----AGIE 392
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL------VDMYSKCG 268
P + + + +L S GLLE G + FY+ +ND I L VD+ S+ G
Sbjct: 393 PDEVSFISILYACSHSGLLEQGW-------RFFYIMKNDFNIEPKLEHYACMVDLLSRTG 445
Query: 269 CLDNA 273
L A
Sbjct: 446 NLSKA 450
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-- 317
LV Y+ CG L +F M +KNV W M + A G E+I L M + G++
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61
Query: 318 --------------PNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+ +++ S+ + GL E GL ++ M
Sbjct: 62 RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 104
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 259/489 (52%), Gaps = 45/489 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
LK S +KQIHA L+ + L +SP QL+ L T +P +F + N
Sbjct: 18 LKKCRALSQLKQIHANLLQSHLPESPFAIGQLLSLAATSN-NPSFFSHACLIFQNLSLRN 76
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+F++N++IR P ++L + ++ GLL +++T+ + +C S S L +G
Sbjct: 77 IFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLA-NNYTFPPLIKACTTLGSSSKL-IGC 134
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ- 188
+H HV GF + V + LI FY+ N D+ + + +FD++P R W AMI+GY
Sbjct: 135 LVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMG 194
Query: 189 ------------------SKKAKDCAFNALVLFRDML-----VDVSGVKPTDTTMVCVLS 225
S A A++ + F+++L + +G P ++ +V VL+
Sbjct: 195 DVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLT 254
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LG L G VH Y ++ + +++ + TALVDMYSKCGC+++AL F + K+
Sbjct: 255 ACAHLGALAQGLWVHSYAKQCNF--DSNPILATALVDMYSKCGCVESALSTFQGIPNKDA 312
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
W AM +G+A++G +++ L + M G +P TF ++ AC HA LV+EGL LF+
Sbjct: 313 GAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQ 372
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI---MGIPIKPDAILWRSLLSACNVHG 402
M S +GVEP ++HY+C+VDL+ RAG L EA FI MG + DA +W ++L AC +G
Sbjct: 373 MSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYG 432
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ +G +V K L ++ D C + V N+Y A + + VR+ + ++
Sbjct: 433 NIEVGNRVWKKL----ADMGVAD--CGTH--VLSYNLYREAGWDMEAKRVRRLISEAGMK 484
Query: 463 TEPGSSILQ 471
+PG SI++
Sbjct: 485 KKPGCSIIE 493
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 216/386 (55%), Gaps = 21/386 (5%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++++ +F + GL D F+ V L +C R L + G I ++T+ G + NV V
Sbjct: 191 REAIDMFRRLLEMGLRP-DSFSLVEVLSACKRTGDLRS---GEWIDEYITENGMVRNVFV 246
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
AT L+ FY ++ + VFD M ++ +W++MI GY S + AL LF M
Sbjct: 247 ATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKE-----ALDLFFKM 301
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
L + G+KP MV VL ++LG LE G + ++ ++ +GTAL+DMY+K
Sbjct: 302 LNE--GLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFL--DNSVLGTALIDMYAK 357
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG +D A +F MR+K+ + W A +G+A+ G +A+ L M G+KP+ TF L
Sbjct: 358 CGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGL 417
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
AC HAGLVEEG F++M+ + + P I+HY C+VDLLGRAG L+EA+ I +P++
Sbjct: 418 LCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEA 477
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
+AI+W +LL C +H D L E V K L+ L+P S ++V LSNIYA++ +W
Sbjct: 478 NAIVWGALLGGCRLHRDTQLVEVVLKKLIALEP--------WHSGNYVLLSNIYAASHKW 529
Query: 447 PDVESVRKQMKVKRVETEPGSSILQT 472
+ +R M + V+ PG S ++
Sbjct: 530 EEAAKIRSIMSERGVKKIPGYSWIEV 555
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 208/428 (48%), Gaps = 37/428 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
++ + H+K IHA L+ L L ++++ + S +I+ PN
Sbjct: 17 IQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRIL----DQTKEPN 72
Query: 74 LFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+FLFNT+IR Q+S+ ++ +GL + D FT+ F L +CAR LG
Sbjct: 73 IFLFNTMIRGLVLNDCFQESIEIYHSMRKEGL-SPDSFTFPFVLKACARVLDSE---LGV 128
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H V K G + V +LI+ Y I + KVFD +P ++ A+W A I+GY
Sbjct: 129 KMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVG 188
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
K A+ +FR +L G++P ++V VLS + G L G + Y+ + +
Sbjct: 189 K-----CREAIDMFRRLL--EMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMV 241
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+VF+ TALVD Y KCG ++ A +F M EKN+++W++M G A +G EA+ L
Sbjct: 242 --RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFF 299
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M + G+KP+ + +C G +E G + + ++ + + ++D+ +
Sbjct: 300 KMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLG-TALIDMYAKC 358
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV--ALG-----EKVGKILLQLQPEV- 421
G ++ A+ G+ K D ++W + +S + G V ALG EK G ++P+
Sbjct: 359 GRMDRAWEVFRGMR-KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSG-----IKPDRN 412
Query: 422 TFVDVACT 429
TFV + C
Sbjct: 413 TFVGLLCA 420
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 239/456 (52%), Gaps = 38/456 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+QIH+ I N +S +Y LI +Y ++ KI+ + + ++ + ++I
Sbjct: 366 EQIHSLSIKNGFESD-MYVSGVLIDMYSKYGCLDKARKILEML----EKRDVVSWTSMIA 420
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYV------FALGSCARFCS-LSTLWLGRQIHVHV 135
D + + L TF + L S A C+ + + G QIH V
Sbjct: 421 GYVQHD-------FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARV 473
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
G+ ++ + TL++ YA +F ++ + TWN +I+G+ QS+ K
Sbjct: 474 YVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGF-GQSRLYK-- 530
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL++F M + +G K T + +S + L ++ G VHG KT + E +V
Sbjct: 531 --QALMVF--MKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEV- 585
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
AL+ +Y KCG +++A +IFS M +N ++W + T + HG+G EA+ L D M+ G
Sbjct: 586 -ANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEG 644
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KPN VTF + AAC H GLVEEGL F +M + +G+ P HY+C+VD+LGRAG L+ A
Sbjct: 645 LKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRA 704
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
F+ +PI +A++WR+LLSAC VH ++ +GE K LL+L+P S +V
Sbjct: 705 RRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPH--------DSASYVL 756
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSN YA +W + + VRK MK + + EPG S ++
Sbjct: 757 LSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIE 792
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 170/378 (44%), Gaps = 24/378 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+ IHAQ+ A S LI LY S K+ VF + FNTLI
Sbjct: 164 RMIHAQVYKQAFCSETFVGNALIALYL----GFGSFKLAERVFCDMLFCDRVTFNTLISG 219
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+C + ++ +F GL D T L +CA S+ L G+Q+H ++ K G
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRP-DCVTVASLLAACA---SVGDLQKGKQLHSYLLKAG 275
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F+ + +L+ Y DI + +F+ + WN M+ Y S AK +
Sbjct: 276 MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAK-----S 330
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+F M +G+ P T C+L + G +E G +H K + E+D+++
Sbjct: 331 FEIFGQM--QATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF--ESDMYVSGV 386
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMYSK GCLD A I + +++V++WT+M G H EA+ M+DCGV P+
Sbjct: 387 LIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPD 446
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+ S +AC + +GL + + G I ++ +V+L R G EEA++
Sbjct: 447 NIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLF 505
Query: 380 MGIPIKPDAILWRSLLSA 397
I K D I W L+S
Sbjct: 506 REIEHK-DEITWNGLISG 522
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 148/314 (47%), Gaps = 21/314 (6%)
Query: 112 ALGSCARFCSLS------TLW-LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
ALGS C+L W L +IH RG + L+ LI YA N + +
Sbjct: 39 ALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQAR 98
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VF ++ R +W AM++GY +QS K+ A L+ M + V PT + VL
Sbjct: 99 QVFKELSSRDHVSWVAMLSGY-AQSGLGKE----AFRLYSQM--HWTAVIPTPYVLSSVL 151
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++ L G +H + K + E F+G AL+ +Y G A +F M +
Sbjct: 152 SACTKGKLFAQGRMIHAQVYKQAFCSE--TFVGNALIALYLGFGSFKLAERVFCDMLFCD 209
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+T+ + +G A G G A+++ D M+ G++P+ VT SL AAC G +++G L
Sbjct: 210 RVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHS 269
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+ K G+ ++DL + G +E A++ I + + + +LW +L A +G +
Sbjct: 270 YLL-KAGMSFDYITEGSLLDLYVKCGDIETAHD-IFNLGDRTNVVLWNLMLVA---YGQI 324
Query: 405 ALGEKVGKILLQLQ 418
+ K +I Q+Q
Sbjct: 325 SDLAKSFEIFGQMQ 338
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 225/448 (50%), Gaps = 57/448 (12%)
Query: 72 PNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PN+ +N L+ R +D+V+ A +GLL D AL + + + +
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVG---DVGLVSV 175
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q+H + K G + V T LI Y + +VFD+ A+ NA+I G
Sbjct: 176 GQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGL-- 233
Query: 188 QSKKAKDCA---------------------------------FNALVLFRDMLVDVSGVK 214
S+ A+ C A+ FR+M G +
Sbjct: 234 -SRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREM--QAQGTE 290
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P T+ CVL + + L G H + + ++ +DV++ +ALVDMY+KCG + +A
Sbjct: 291 PNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFL--HDVYVSSALVDMYAKCGRVKDAR 348
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+IF M +NV++W AM G A++G+ A+ + SM C KP+ VTFT L AAC AG
Sbjct: 349 IIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAG 408
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
L EEG H F M +++GV P ++HY+C+V LLGRAG L+EAY+ I +P +PDA +W SL
Sbjct: 409 LTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSL 468
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L +C VHG+V L E + L L+PE + ++V LSNIYAS + W V VR+
Sbjct: 469 LGSCRVHGNVDLAEVAAEKLFHLEPE--------NAGNYVLLSNIYASKKMWDRVNRVRE 520
Query: 455 QMKVKRVETEPGSSILQ--TTTHYTLDG 480
MK ++ E G S ++ H L G
Sbjct: 521 MMKDVGLKKEKGCSWIEIKNKVHMLLAG 548
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 120/283 (42%), Gaps = 47/283 (16%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP------- 171
F S TL L R +H G + VA++L+H Y + + +FD MP
Sbjct: 27 FKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVV 86
Query: 172 ------------------------MRSSA-------TWNAMINGYCSQSKKAKDCAFNAL 200
MR TWN +++G ++S +A+D
Sbjct: 87 GWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGL-NRSGRARDAVVALA 145
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+ + L+ +P T + C LS +GL+ G +HGY K D + TAL
Sbjct: 146 TMHGEGLL-----RPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGC--RADACVVTAL 198
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY KCG + +F +V + A+ G++ + + EA+RL D GV+ N
Sbjct: 199 IDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNV 258
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
V++TS+ A C G E + F M+++ G EP+ C++
Sbjct: 259 VSWTSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVTIPCVL 300
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 13/191 (6%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMR--EKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
D F+ ++L+ Y + G NA +F M ++ V+ W+A+ A G A RLL+
Sbjct: 51 DPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEE 110
Query: 311 MR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
MR D GV+PN +T+ L + +G + + M + + P SC + +G
Sbjct: 111 MRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDV 170
Query: 370 GHL---EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
G + ++ + + + + DA + +L+ +++G +V ++ E + +DV
Sbjct: 171 GLVSVGQQLHGYAVKAGCRADACVVTALI---DMYGKCGQAAEVVRVF----DESSHMDV 223
Query: 427 ACTSEDFVALS 437
A + LS
Sbjct: 224 ASCNALIAGLS 234
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 157/498 (31%), Positives = 239/498 (47%), Gaps = 80/498 (16%)
Query: 48 LYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLT 103
L+ + A + + VF P+ F++NTLIR P+D+V ++ + +G
Sbjct: 17 LFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGG 76
Query: 104 F---DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---- 156
D T+ F L +C + T G Q+H HV K G + V LI +AS
Sbjct: 77 GVRPDKLTFPFVLRACTAMGAGDT---GVQVHAHVVKAGCESDAFVKNALIGMHASCGNL 133
Query: 157 ---------------------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
DI + + +FD+ P++ +WN MI Y +
Sbjct: 134 GIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRG 193
Query: 190 KKA-----------KDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCV 223
A +D +AL LF M G KP TM+ +
Sbjct: 194 DMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM--QRMGEKPDIVTMLSL 251
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS + G L+ G +H + F V +G AL+DMY+KCG + +A +F MR+K
Sbjct: 252 LSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDK 311
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V TW ++ G+A+HG E+I + + M V+P+ +TF ++ AC H G+V++G F
Sbjct: 312 DVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFF 371
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ M+ K+ VEP+IKHY C+VD+LGRAG L+EA+ FI + +P++++WR+LLSAC VHG+
Sbjct: 372 NLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGE 431
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ L + + LL+ + + S D+V LSNIYAS W E +RK M V
Sbjct: 432 IELAKHANRQLLKARND--------ESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNK 483
Query: 464 EPGSSILQTTTHYTLDGF 481
E S L H L GF
Sbjct: 484 EADSERLH---HRLLFGF 498
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 211/370 (57%), Gaps = 20/370 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
D FT+ L +C SL L G+QIH +V + NV V + L+ Y+ + I
Sbjct: 266 FAMDQFTFGSVLTACG---SLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIK 322
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
S + VF +MP ++ +W AM+ GY Q+ +++ A+ +F +M +GV+P D T+
Sbjct: 323 SAETVFKRMPQKNVISWTAMLVGY-GQNGFSEE----AVKIFFEM--QRNGVEPDDFTLG 375
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V+S + L LE GA H + + + + + AL+ +Y KCG +N+ +F+ M
Sbjct: 376 SVISSCANLASLEEGAQFHCRALVSGLI--SFITVSNALITLYGKCGSTENSHRLFTEMN 433
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
++ ++WTA+ G A GK NE I L + M G+KP+ VTF + +AC AGLVE+GL
Sbjct: 434 IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQ 493
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F++M + G+ P + H +CI+DLLGRAG LEEA NFI +P PD + W +LLS+C VH
Sbjct: 494 YFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVH 553
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GD+ +G+ L+ L+P+ +V LS++YAS +W V +R+ M+ KRV
Sbjct: 554 GDMEIGKWAADSLIALEPQ--------NPASYVLLSSLYASKGKWDKVAQLRRGMRDKRV 605
Query: 462 ETEPGSSILQ 471
EPG S ++
Sbjct: 606 RKEPGYSWIK 615
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/412 (21%), Positives = 169/412 (41%), Gaps = 83/412 (20%)
Query: 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWV 97
S YA L++L C + Q+ K+ + P FL N LI
Sbjct: 4 SSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLI---------------- 47
Query: 98 SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157
T + LG+ A + H+ + N+ T++ Y+
Sbjct: 48 ----------TAYYKLGNLA---------YAHHVFDHIPQP----NLFSWNTILSVYSKL 84
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+S +++F+ MP R +WN I+GY + C+ +A+ +++ ML D + +
Sbjct: 85 GLLSQMQQIFNLMPFRDGVSWNLAISGYANYG----SCS-DAVRVYKLMLKD-AAMNLNR 138
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----------- 266
T +L + S+ ++ G ++G + K + +DVF+G+ LVDMY+K
Sbjct: 139 ITFSTMLILCSKFRCVDLGRQINGQILKFGF--GSDVFVGSPLVDMYTKLGLIYDAKRYF 196
Query: 267 --------------------CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
CG ++ + +F ++E++ ++WT M TG+ +G EA+
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALD 256
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ MR G + TF S+ AC + EG + + + + ++ S +VD+
Sbjct: 257 MFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYV-IRTDHKDNVFVGSALVDMY 315
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ ++ A +P K + I W ++L +G E+ KI ++Q
Sbjct: 316 SKCRSIKSAETVFKRMPQK-NVISWTAMLVG---YGQNGFSEEAVKIFFEMQ 363
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 195/332 (58%), Gaps = 17/332 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV T+I YA N DI+ + FD+MP R S +W A+I GY +QS ++ AL L
Sbjct: 246 NVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGY-AQSGYGEE----ALHL 300
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M D G + +T LS +++ LE G VHG + K E+ ++G AL+
Sbjct: 301 FVEMKRD--GERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL--ESGCYVGNALLV 356
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG +D+A ++F + EK V++W M G A HG G EA+ L +SM+ G+ P+ VT
Sbjct: 357 MYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVT 416
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ +AC H GLV++G F +M +G+ + KHY+C++DLLGRAG L++A N + +
Sbjct: 417 MVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 476
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P +PDA W +LL A +HG+ LGEK K++ +++P+ S +V LSN+YA+
Sbjct: 477 PFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPD--------NSGMYVLLSNLYAA 528
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+ RW DV +R +M+ + V+ PG S ++
Sbjct: 529 SGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 560
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ L +CA +L LG+Q+H V K G V L+ Y +I VF
Sbjct: 315 TFTSTLSTCAEIAALE---LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ + + +WN MI GY AL+LF M +G+ P D TMV VLS
Sbjct: 372 EGIEEKEVVSWNTMIAGYARHG-----FGKEALMLFESM--KKTGILPDDVTMVGVLSAC 424
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVL 286
S GL++ G M + + + N T ++D+ + G LD+A + M E +
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHY-TCMIDLLGRAGRLDDAQNLMKNMPFEPDAA 483
Query: 287 TWTAMATGMAIHGK---GNEAIRLLDSMR--DCGVKPNAVTFTSLFAACCHAGLV 336
TW A+ IHG G +A +++ M + G+ V ++L+AA G V
Sbjct: 484 TWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGM---YVLLSNLYAASGRWGDV 535
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 120/274 (43%), Gaps = 38/274 (13%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
Y + + +FD+MP R +WN MI+GY A N +L L + S V
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGY----------AQNGELLEAQRLFEESPV 182
Query: 214 KPTDTTMVCVLSVSSQLGLLE----------------FGACVHGYME-------KTFY-- 248
+ T ++S Q G+L+ + A + GY++ + +
Sbjct: 183 RDV-FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEA 241
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP +V ++ Y++ G + A F RM +++ ++W A+ G A G G EA+ L
Sbjct: 242 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 301
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ G + N TFTS + C +E G + + K G+E + ++ + +
Sbjct: 302 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRV-VKAGLESGCYVGNALLVMYCK 360
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G++++AY GI K + + W ++++ HG
Sbjct: 361 CGNIDDAYIVFEGIEEK-EVVSWNTMIAGYARHG 393
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 147/347 (42%), Gaps = 61/347 (17%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
DF L C R+ +L R + + +R +V+ ++ YA N + K+
Sbjct: 30 DFLERHDLRGCVRYRNLRA---ARLLFDQMPER----DVVSWNAMLSGYAQNGYVKEAKE 82
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+MP ++S +WN M+ Y Q+ + +D A LF
Sbjct: 83 IFDEMPCKNSISWNGMLAAYV-QNGRIED----ARRLFES-------------------- 117
Query: 226 VSSQLGLLEFGACVHGYMEKTF---------YMPENDVFIGTALVDMYSKCGCLDNALLI 276
+ L+ + + GY+++ MPE D ++ Y++ G L A +
Sbjct: 118 -KADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 176
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F ++V TWTAM +G +G +EA R+ D M + N+V++ ++ A +
Sbjct: 177 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRM 232
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
++ LF+ M + ++ ++ ++ + G + +A NF +P + D+I W ++++
Sbjct: 233 DQARELFEAMPCQ-----NVSSWNTMITGYAQNGDIAQARNFFDRMPQR-DSISWAAIIA 286
Query: 397 ACNVHGDVALGEKVGKILLQLQPE------VTFVDVACTSEDFVALS 437
+ GE+ + ++++ + TF T + AL
Sbjct: 287 G---YAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 205/381 (53%), Gaps = 20/381 (5%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
+F V +GL D FT L + F L L G Q H + K GF N V + LI
Sbjct: 227 LFQEMVRRGL-NVDMFTLASVLTA---FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282
Query: 152 HFYAS-NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
Y+ +S +KVF+++ WN M++GY + +D AL FR M
Sbjct: 283 DLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED----ALECFRQM--QG 336
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
G +P D + VCV+S S L G +H K+ +P N + + AL+ MYSKCG L
Sbjct: 337 IGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKS-DIPSNRISVDNALIAMYSKCGNL 395
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+A +F RM E N ++ +M G A HG E++ L M + + P ++TF S+ +AC
Sbjct: 396 QDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSAC 455
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H G VEEG + F+ MK K+ +EP +HYSC++DLLGRAG L EA N I +P P +I
Sbjct: 456 AHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIG 515
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W SLL AC HG++ L K +LQL+P + +V LSN+YASA RW +V
Sbjct: 516 WASLLGACRTHGNIELAVKAANQVLQLEPS--------NAAPYVVLSNMYASAGRWEEVA 567
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+VRK M+ + V+ +PG S ++
Sbjct: 568 TVRKFMRDRGVKKKPGCSWIE 588
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 61 IVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
I H +F P+L +NTLI C ++ +F+ GL D FT + +C
Sbjct: 92 IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGL-DMDGFTLSAVITAC 150
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSS 175
+ L Q+H GF V V L+ +Y N D+ K+VF M +R
Sbjct: 151 C-----DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDE 205
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WN+MI Y + +K AL LF++M+ G+ T+ VL+ + L L
Sbjct: 206 VSWNSMIVAYGQHQEGSK-----ALGLFQEMV--RRGLNVDMFTLASVLTAFTCLEDLSG 258
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKC-GCLDNALLIFSRMREKNVLTWTAMATG 294
G HG + KT + + +G+ L+D+YSKC G + + +F + E +++ W M +G
Sbjct: 259 GLQFHGQLIKTGF--HQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316
Query: 295 MAIHGKG-NEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+ + + +A+ M+ G +PN +F + +AC
Sbjct: 317 YSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISAC 353
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 26/263 (9%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F FN ++A YA ++FDQ+P ++N +I+ Y + A A
Sbjct: 75 FSFNAIIAA-----YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAP-----A 124
Query: 200 LVLF---RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
L LF R+M +D+ G + C V +G L A G+ ++ V +
Sbjct: 125 LGLFSGMREMGLDMDGFTLSAVITACCDDV-GLIGQLHSVAVSSGF--------DSYVSV 175
Query: 257 GTALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
AL+ Y K G LD+A +F M ++ ++W +M H +G++A+ L M G
Sbjct: 176 NNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG 235
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
+ + T S+ A + GL + K+ + H+ S ++DL + G
Sbjct: 236 LNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVG--SGLIDLYSKCGGGMS 293
Query: 375 AYNFIMGIPIKPDAILWRSLLSA 397
+ +PD +LW +++S
Sbjct: 294 DCRKVFEEITEPDLVLWNTMVSG 316
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+VF A++ Y+K A +F ++ E +++++ + + A G+ A+ L MR
Sbjct: 73 NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132
Query: 313 DCGVKPNAVTFTSLFAACC-HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ G+ + T +++ ACC GL+ + LH ++ G + ++ + ++ G+ G
Sbjct: 133 EMGLDMDGFTLSAVITACCDDVGLIGQ-LH---SVAVSSGFDSYVSVNNALLTYYGKNGD 188
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVH--GDVALG 407
L++A G+ D + W S++ A H G ALG
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALG 226
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 205/381 (53%), Gaps = 20/381 (5%)
Query: 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLI 151
+F V +GL D FT L + F L L G Q H + K GF N V + LI
Sbjct: 227 LFQEMVRRGL-NVDMFTLASVLTA---FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282
Query: 152 HFYAS-NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
Y+ +S +KVF+++ WN M++GY + +D AL FR M
Sbjct: 283 DLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLED----ALECFRQM--QG 336
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
G +P D + VCV+S S L G +H K+ +P N + + AL+ MYSKCG L
Sbjct: 337 IGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKS-DIPSNRISVDNALIAMYSKCGNL 395
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+A +F RM E N ++ +M G A HG E++ L M + + P ++TF S+ +AC
Sbjct: 396 QDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSAC 455
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H G VEEG + F+ MK K+ +EP +HYSC++DLLGRAG L EA N I +P P +I
Sbjct: 456 AHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIG 515
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W SLL AC HG++ L K +LQL+P + +V LSN+YASA RW +V
Sbjct: 516 WASLLGACRTHGNIELAVKAANQVLQLEPS--------NAAPYVVLSNMYASAGRWEEVA 567
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+VRK M+ + V+ +PG S ++
Sbjct: 568 TVRKFMRDRGVKKKPGCSWIE 588
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 61 IVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
I H +F P+L +NTLI C ++ +F+ GL D FT + +C
Sbjct: 92 IAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGL-DMDXFTLSAVITAC 150
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM-PMRSS 175
+ L Q+H GF V V L+ +Y N D+ K+VF M +R
Sbjct: 151 C-----DDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDE 205
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WN+MI Y + +K AL LF++M+ G+ T+ VL+ + L L
Sbjct: 206 VSWNSMIVAYGQHQEGSK-----ALGLFQEMV--RRGLNVDMFTLASVLTAFTCLEDLSG 258
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKC-GCLDNALLIFSRMREKNVLTWTAMATG 294
G HG + KT + + +G+ L+D+YSKC G + + +F + E +++ W M +G
Sbjct: 259 GLQFHGQLIKTGF--HQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSG 316
Query: 295 MAIHGKG-NEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+ + + +A+ M+ G +PN +F + +AC
Sbjct: 317 YSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISAC 353
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 110/263 (41%), Gaps = 26/263 (9%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F FN ++A YA ++FDQ+P ++N +I+ Y + A A
Sbjct: 75 FSFNAIIAA-----YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAP-----A 124
Query: 200 LVLF---RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
L LF R+M +D+ + C V +G L A G+ ++ V +
Sbjct: 125 LGLFSGMREMGLDMDXFTLSAVITACCDDV-GLIGQLHSVAVSSGF--------DSYVSV 175
Query: 257 GTALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
AL+ Y K G LD+A +F M ++ ++W +M H +G++A+ L M G
Sbjct: 176 NNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRG 235
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
+ + T S+ A + GL + K+ + H+ S ++DL + G
Sbjct: 236 LNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVG--SGLIDLYSKCGGGMS 293
Query: 375 AYNFIMGIPIKPDAILWRSLLSA 397
+ +PD +LW +++S
Sbjct: 294 DCRKVFEEITEPDLVLWNTMVSG 316
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+VF A++ Y+K A +F ++ E +++++ + + A G+ A+ L MR
Sbjct: 73 NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132
Query: 313 DCGVKPNAVTFTSLFAACC-HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ G+ + T +++ ACC GL+ + LH ++ G + ++ + ++ G+ G
Sbjct: 133 EMGLDMDXFTLSAVITACCDDVGLIGQ-LH---SVAVSSGFDSYVSVNNALLTYYGKNGD 188
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVH--GDVALG 407
L++A G+ D + W S++ A H G ALG
Sbjct: 189 LDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALG 226
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 202/328 (61%), Gaps = 17/328 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ ++ YAS +S +K+FD MP R++A+W++M+ G ++ C AL +
Sbjct: 169 NVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLV----RSNRCE-EALRV 223
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M+ GV P ++ +V +S S L LE G VH Y ++ + + + TA+VD
Sbjct: 224 FSEMIG--MGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRE--LQGMSLVLATAIVD 279
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG + NA+ +F+ M KN+ +W +M TG+A++G+ +A+ L M+ GV+PN +T
Sbjct: 280 MYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDIT 339
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F L AC H+GLV+EG LF+ M + +G++P +HY +VDLLGRAGH+ EA +F+ +
Sbjct: 340 FIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSM 399
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P LW +L AC +HG+V LGE++ K L++L+P ++ LSNIY +
Sbjct: 400 PVEPHPGLWGALAGACKIHGEVELGEEIAKKLIELEPR--------HGSRYILLSNIYGA 451
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSIL 470
+ RW D+ +VR+ +K ++V G++++
Sbjct: 452 SNRWDDMATVRRLLKDRKVPKGTGNAMV 479
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 13/226 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ L+R ++++ VF+ + G++ ++ V A+ +C+ SL G +H +
Sbjct: 207 MVTGLVRSNRCEEALRVFSEMIGMGVVP-NESALVSAVSACSLLRSLEH---GVWVHAYA 262
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+ ++++AT ++ Y I + +VF MP+++ +WN+MI G ++
Sbjct: 263 KRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGRE---- 318
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL LF M ++GV+P D T + +L S GL++ G + M F +
Sbjct: 319 -MQALSLFWKM--QMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEH 375
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGK 300
G +VD+ + G + A+ + M E + W A+A IHG+
Sbjct: 376 YGL-MVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGE 420
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 115/300 (38%), Gaps = 56/300 (18%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D + F+L SC R SL L +H + G +V V + + Y D++S +
Sbjct: 71 DHLSLSFSLHSCTRSPSLPVASL---LHSFAVRLGHARDVYVLSAAVSAYFRATDVASAE 127
Query: 165 KVFDQMP-MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
++F + TW M+ G+ + + F
Sbjct: 128 RLFSYTKDVADVVTWTTMVTGHANTGDLERARWF-------------------------- 161
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
F A MPE +V A++ Y+ G L A +F M +
Sbjct: 162 -----------FDA-----------MPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSR 199
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N +W++M TG+ + EA+R+ M GV PN S +AC +E G+ +
Sbjct: 200 NAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVH 259
Query: 344 DNMKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
K + G+ + + IVD+ G+ G + A +P+K + W S+++ ++G
Sbjct: 260 AYAKRELQGMS--LVLATAIVDMYGKCGGIHNAVRVFAAMPVK-NIYSWNSMITGLAMNG 316
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 240/455 (52%), Gaps = 33/455 (7%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
K IH Q+I + + L+ L+ +Y ++ + K VF ++ + LI
Sbjct: 211 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK----VFGEIPERDVVSWTALITG 266
Query: 84 TPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
+ + +F +++G + +T++ L SC+ SLS + LG+Q+H + K
Sbjct: 267 FVAEGYGSGLRIFNQMLAEGF-NPNMYTFISILRSCS---SLSDVDLGKQVHAQIVKNSL 322
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS--QSKKAKDCAFN 198
N V T L+ YA N+ + + +F+++ R W ++ GY Q +KA C
Sbjct: 323 DGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQ 382
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
+ GVKP + T+ LS S++ L+ G +H K D+F+ +
Sbjct: 383 ---------MQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA--GQSGDMFVAS 431
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
ALVDMY+KCGC+++A ++F + ++ ++W + G + HG+G +A++ ++M D G P
Sbjct: 432 ALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVP 491
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ VTF + +AC H GL+EEG F+++ +G+ P I+HY+C+VD+LGRAG E +F
Sbjct: 492 DEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESF 551
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I + + + ++W ++L AC +HG++ GE+ L +L+PE+ +++ LSN
Sbjct: 552 IEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEI--------DSNYILLSN 603
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
++A+ W DV +VR M + V+ EPG S ++
Sbjct: 604 MFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVN 638
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 180/381 (47%), Gaps = 44/381 (11%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+T++ L +CA S L G+ IH V K G + + +L++ YA + KV
Sbjct: 192 YTFISILKTCA---SKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
F ++P R +W A+I G+ ++ + L +F ML + G P T + +L
Sbjct: 249 FGEIPERDVVSWTALITGFVAEGYGS------GLRIFNQMLAE--GFNPNMYTFISILRS 300
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S L ++ G VH + K + ND F+GTALVDMY+K L++A IF+R+ ++++
Sbjct: 301 CSSLSDVDLGKQVHAQIVKN-SLDGND-FVGTALVDMYAKNRFLEDAETIFNRLIKRDLF 358
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
WT + G A G+G +A++ M+ GVKPN T S + C ++ G L +M
Sbjct: 359 AWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLH-SM 417
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K G + S +VD+ + G +E+A G+ + D + W +++ + HG
Sbjct: 418 AIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGK 476
Query: 407 GEKVGKILLQ---LQPEVTFVDV--ACT--------SEDFVALSNIY------------- 440
K + +L + EVTF+ V AC+ + F +LS IY
Sbjct: 477 ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 536
Query: 441 ---ASAERWPDVESVRKQMKV 458
A ++ +VES ++MK+
Sbjct: 537 DILGRAGKFHEVESFIEEMKL 557
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 159/371 (42%), Gaps = 49/371 (13%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L ++ ++I V K G + + ++L++ Y + + ++V ++MP++ WN
Sbjct: 2 LRAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQK 61
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
++ S + A+ LF L+ + ++ ++S ++ LG +G +H
Sbjct: 62 LSSANSPYPLQE-----AVQLF--YLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHA 114
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K Y E+D+ I A V MY K ++N F M +N+ + + +G
Sbjct: 115 CVCK--YGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETC 172
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
++ R+L + G +PN TF S+ C G + EG + + K G+ P ++
Sbjct: 173 DQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQV-IKSGINPDSHLWNS 231
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG-KILLQLQPE 420
+V++ + G A IP + D + W +L++ G VA G G +I Q+ E
Sbjct: 232 LVNVYAKCGSANYACKVFGEIP-ERDVVSWTALIT-----GFVAEGYGSGLRIFNQMLAE 285
Query: 421 ------VTFVDV--ACTS---------------------EDFV--ALSNIYASAERWPDV 449
TF+ + +C+S DFV AL ++YA D
Sbjct: 286 GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDA 345
Query: 450 ESVRKQMKVKR 460
E++ ++ +KR
Sbjct: 346 ETIFNRL-IKR 355
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 207/370 (55%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + + AR S+ LGRQ+H + GF N+ + LI FY+ ++ +
Sbjct: 194 DESTMVTVISASARSGSIE---LGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F + + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKE-----ALLLFQEMLR--SGESPNDVTMLSIL 303
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMYSKCG ++ A +F+ M K+
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKS 363
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ W AM G A+HG+ N A + MR +KP+ +TF L +AC HAG+++ G H+F
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFR 423
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 424 SMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNV 483
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGEK + L +++P +V LSNIYA+A RW +V +R + K ++
Sbjct: 484 ELGEKFAQNLFKIEPN--------NPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKV 535
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 536 PGCSSIEIDS 545
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 191/417 (45%), Gaps = 85/417 (20%)
Query: 65 VFTHFDPPNLFLFNTLIR---CTP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF PNL ++NT+ R +P P ++ ++ +S GLL + +T+ F L SCA+
Sbjct: 19 VFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLP-NSYTFPFLLKSCAK-- 75
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD--------------------- 159
L G QIH HV K G+ ++ V T+LI Y N+
Sbjct: 76 -LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA 134
Query: 160 ----------ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
I S + +FD++P++ +WNAMI+GY + AL LF++M+
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKE-----ALELFKEMM-- 187
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
+ V+P ++TMV V+S S++ G +E G VH ++ + +++ I AL+D YSKCG
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGF--GSNLKIVNALIDFYSKCGE 245
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ A +F + K+V++W + G EA+ L M G PN VT S+ A
Sbjct: 246 METACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHA 305
Query: 330 CCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN---------- 377
C H G ++ G +H++ + + K GV + ++D+ + G +E A+
Sbjct: 306 CAHLGAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSL 364
Query: 378 -----FIMGI-------------------PIKPDAILWRSLLSACNVHGDVALGEKV 410
I G IKPD I + LLSAC+ G + LG +
Sbjct: 365 PAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHI 421
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 33/156 (21%)
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A+ +F ++E N+L W M G A+ A++L M G+ PN+ TF L +C
Sbjct: 16 AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75
Query: 333 AGLVEEGLHLFDNMKSKWGVE-------------------------------PHIKHYSC 361
+EGL + ++ K G E + Y+
Sbjct: 76 LKASKEGLQIHGHVL-KLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA 134
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+V G++E A N IP+K D + W +++S
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVK-DVVSWNAMISG 169
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 197/353 (55%), Gaps = 18/353 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ ++ L G+ IH VTK G F + +L YA + + F++M + W
Sbjct: 211 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 270
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI+GY + + A+ LFR+M+ ++ TM + S+Q+G LE
Sbjct: 271 NAMISGYANNGYGEE-----AIKLFREMIT--KNIRVDSITMRSAVLASAQVGSLELARW 323
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ GY+ K+ Y +D F+ T L+DMY+KCG + A +F R+ +K+V+ W+ M G +H
Sbjct: 324 LDGYISKSEY--RDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLH 381
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G G EAI L + M+ GV PN TF L AC ++GLV+EG LF M G+EPH +H
Sbjct: 382 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH-GIEPHHQH 440
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VDLLGRAG+L +AY+FIM +PIKP +W +LLSAC +H V LGE + L L
Sbjct: 441 YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILD 500
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P T +V LSN+YASA W V +VR M K + + G S ++
Sbjct: 501 PYNT--------GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIE 545
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 173/385 (44%), Gaps = 24/385 (6%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
H+ Q++ QLI + L L+ + H F P++ L+N +I+
Sbjct: 17 HLDQVYVQLIVSGLHKCRF---LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK 73
Query: 83 CTPPQDSV-----LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
++ V + +S+ + + FT+++ L +C S +G+QIH K
Sbjct: 74 GYTQKNIVDAPIRMYMDMQISQ--VHPNCFTFLYVLKACG---GTSVEGIGKQIHGQTFK 128
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF NV V +L+ YA IS + VFD++ R+ +W ++I+GY
Sbjct: 129 YGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD-----PM 183
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL +F++M VKP +V V++ + + L G +HG + K E D+ I
Sbjct: 184 EALNVFKEM--RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI- 240
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
+L MY+K G ++ A F+RM + N++ W AM +G A +G G EAI+L M ++
Sbjct: 241 -SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIR 299
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
+++T S A G +E L D SK + ++D+ + G + A
Sbjct: 300 VDSITMRSAVLASAQVGSLELARWL-DGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARC 358
Query: 378 FIMGIPIKPDAILWRSLLSACNVHG 402
+ K D +LW ++ +HG
Sbjct: 359 VFDRVADK-DVVLWSVMIMGYGLHG 382
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 135/293 (46%), Gaps = 19/293 (6%)
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
D++ K F ++ WNA+I GY K+ + ++ DM +S V P
Sbjct: 49 DVNYAHKAFREVSEPDILLWNAIIKGYTQ-----KNIVDAPIRMYMDM--QISQVHPNCF 101
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T + VL + G +HG +TF Y ++VF+ +LV MY+K G + A ++F
Sbjct: 102 TFLYVLKACGGTSVEGIGKQIHG---QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVF 158
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
++ ++ V++WT++ +G +G EA+ + MR C VKP+ + S+ A + +
Sbjct: 159 DKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLG 218
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+G + + +K G+E + + + G L E F KP+ ILW +++S
Sbjct: 219 QGKSI-HGLVTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLILWNAMISG 276
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE--RWPD 448
+ + GE+ K+ ++ + VD + T V S S E RW D
Sbjct: 277 ---YANNGYGEEAIKLFREMITKNIRVD-SITMRSAVLASAQVGSLELARWLD 325
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 205/366 (56%), Gaps = 20/366 (5%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
+F + AL +CA L LW+GR +H V K + +V L+ Y + + K
Sbjct: 30 NFAFSTALKACA---DLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLK 86
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
VFDQMP R+ A+WN++I+G+ + K + AL +FR M G+ + T+ +L
Sbjct: 87 VFDQMPERNVASWNSLISGFVKEDKLGE-----ALDVFRRM--QREGMGFSWVTLTTILP 139
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ +++ L G +H + K+ P DV + +LVDMY KCG +D +F MR K++
Sbjct: 140 ICARVTALLSGKEIHAQIVKSARRP--DVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDL 197
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+W M TG AI+G A+ L + M CG++P+ VTF +L + C HAGL E+G LF
Sbjct: 198 TSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHR 257
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M+ +GV P ++HY+C+VD+LGRAG ++ A + +P+K +W SLL++C +H +V
Sbjct: 258 MEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVP 317
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
L E + L +L+P ++V LSNIYA+A W V VR+ M+ +R+ E
Sbjct: 318 LAEAIANRLFELEPY--------NPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEA 369
Query: 466 GSSILQ 471
G S +Q
Sbjct: 370 GCSWIQ 375
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/444 (33%), Positives = 235/444 (52%), Gaps = 53/444 (11%)
Query: 70 DPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
DPPN + +N +IR P+ S+ V+ + GLL D TY F + S +R LS
Sbjct: 816 DPPN-YGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLP-DHMTYPFLMKSSSR---LSNR 870
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LG +H V K G +++ + TLIH Y S +D +S +K+FD+MP ++ TWN++++ Y
Sbjct: 871 KLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAY 930
Query: 186 CSQSK-------------------------KAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
K +N + D ++ + K + TM
Sbjct: 931 AKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTM 990
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR- 279
V V+ + LG L G VH Y+ ++P V + T+L+DMY+KCG + +A +F R
Sbjct: 991 VSVICACAHLGALNRGKTVHRYILDV-HLPLT-VILQTSLIDMYAKCGSIGDAWSVFYRA 1048
Query: 280 -MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
++E + L W A+ G+A HG E+++L MR+ + P+ +TF L AAC H GLV+E
Sbjct: 1049 SVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKE 1108
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
H F ++K G EP +HY+C+VD+L RAG +++A++FI +PIKP + +LL+ C
Sbjct: 1109 AWHFFKSLKES-GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGC 1167
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
HG++ L E VGK L++LQP +V L+N+YA +++ S+R+ M+
Sbjct: 1168 INHGNLELAETVGKKLIELQPH--------NDGRYVGLANVYAINKQFRAARSMREAMEK 1219
Query: 459 KRVETEPGSSILQTTTHYTLDGFR 482
K V+ G SIL LDG R
Sbjct: 1220 KGVKKIAGHSILD------LDGTR 1237
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/366 (19%), Positives = 127/366 (34%), Gaps = 89/366 (24%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
+KA + +H + + P +Y +I+ C + S +S K++ + P+
Sbjct: 450 VKANKVDMAVTLLHDIVQNGLIPGPMMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQ 509
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL------- 127
F N + C + DF L RF W+
Sbjct: 510 FTLNCIYGCLAERC-----------------DFVGALDLLKKMRFYGFEP-WIKHTTFLV 551
Query: 128 ------GRQIHV-----HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
GR + V GF+ +++ +T I N+ + G ++F +
Sbjct: 552 KKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICANGHC 611
Query: 177 ----TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
++ +I C + A +LF +M+ G+KPT T
Sbjct: 612 PDVIAYHVLIKALCKACR-----TMEADILFNEMVS--KGLKPTVATY------------ 652
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK----NVLTW 288
+++D + K G +D L RM E +V+T+
Sbjct: 653 -------------------------NSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITY 687
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
T++ G+ G+ +EAI + M+ PN +TF +L C G E L F M+
Sbjct: 688 TSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEE 747
Query: 349 KWGVEP 354
K +EP
Sbjct: 748 K-EMEP 752
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+ + + GM G+ E+++LL M+D GV+P+ T ++ L L
Sbjct: 475 MMYNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKK 534
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
M+ +G EP IKH + +V L G +A ++
Sbjct: 535 MRF-YGFEPWIKHTTFLVKKLCENGRAVDACKYL 567
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 268 GCLDNALLIFSRMRE-----KNVLTWTAMATGMAIHGKGNEAIRLLDS----MRDCGVKP 318
G +D A +F R+RE N T+ + AI + ++ L+++ MRDCG
Sbjct: 155 GLVDEASSVFDRVREMGLCVPNAYTYNCLLE--AISKSNSSSVELVEARLKEMRDCGFHF 212
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ T T + C+ G E L +F+ + S+ ++ HI + +V + G +++A+
Sbjct: 213 DKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDEHIS--TILVVSFCKWGQVDKAFEL 270
Query: 379 I 379
I
Sbjct: 271 I 271
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 111/273 (40%), Gaps = 36/273 (13%)
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
V +A TL+H N I PM +N +I G C + + + +L L
Sbjct: 455 VDMAVTLLHDIVQNGLIPG--------PM----MYNNIIEGMCKEGRSEE-----SLKLL 497
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
+M +GV+P+ T+ C+ ++ +F + + FY E + T LV
Sbjct: 498 GEM--KDAGVEPSQFTLNCIYGCLAER--CDFVGALDLLKKMRFYGFEPWIKHTTFLVKK 553
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG--KGNEAIRLLDSMRDC---GVKP 318
+ G +A + + L +T AI G K R L+ RD G P
Sbjct: 554 LCENGRAVDACKYLDDVAGEGFLGHMVASTA-AIDGLIKNEGVDRGLELFRDICANGHCP 612
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ + + L A C A E LF+ M SK G++P + Y+ ++D + G ++ +
Sbjct: 613 DVIAYHVLIKALCKACRTMEADILFNEMVSK-GLKPTVATYNSMIDGWCKEGEIDRGLSC 671
Query: 379 IMGI---PIKPDAILWRSLLSACNVHGDVALGE 408
I+ + PD I + SL +HG A G
Sbjct: 672 IVRMYEDEKNPDVITYTSL-----IHGLCASGR 699
>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 165/504 (32%), Positives = 253/504 (50%), Gaps = 64/504 (12%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKS--PPLYAQLIQLYCTKKASPQSTKIV 62
P + F L +KA + S +KQIH +I + S L+ L++ Y + + K
Sbjct: 130 PDRQTFLHL-MKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEK-- 186
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF P++ FN +I Q +++ ++ VS G+ D++T + L C
Sbjct: 187 --VFAIMPQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEP-DEYTLLGLLVCCGH 243
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMF--NVLVATTLIHFYASNK------------------ 158
LS + LG+ +H + +RG ++ N+++ L+ Y K
Sbjct: 244 ---LSDIRLGKGVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMR 300
Query: 159 -------------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
D+ + + VFDQMP R +WN+++ +C K A L F +
Sbjct: 301 SWNTMVVGFVRLGDMEAAQAVFDQMPQRDLVSWNSLL--FCYSKKGCDQRAVREL--FYE 356
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
ML+ V VKP TMV ++S ++ G L G VHG M + E D F+ +AL+DMY
Sbjct: 357 MLI-VEKVKPDRVTMVSLISGAANNGELSHGRWVHGLMIRL--QLEGDAFLSSALIDMYC 413
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG ++ A ++F EK+V WT+M TG A HG G +A++L M++ V PN VT +
Sbjct: 414 KCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLA 473
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG-IPI 384
+ AC H+GLVEEGLH+F +MK K+G P +HY +VDLL RAG LEEA + + +P+
Sbjct: 474 VLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDIVQNKMPM 533
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+P +W S+LSAC D+ E LL+L+PE +V LSNIYA+
Sbjct: 534 RPSQSMWGSILSACREGEDIETAELALSELLKLEPE--------KEGGYVLLSNIYATVG 585
Query: 445 RWPDVESVRKQMKVKRVETEPGSS 468
RW + R+ M+ + V+ G S
Sbjct: 586 RWGYSDKTREAMESRGVKKTAGYS 609
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/448 (22%), Positives = 193/448 (43%), Gaps = 59/448 (13%)
Query: 11 ALLKLKAITTPSHIKQIHAQLIT-NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
+L+ L+ ++ + KQ+ AQ++ N + ++LI + + P++ + +F F
Sbjct: 36 SLVLLENCSSRNQFKQVLAQIMRFNLIGVTFPMSRLI--FFSAITYPENLDLAKLLFLDF 93
Query: 70 DP-PNLFLFNTLIRCTPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTLW 126
P PN+F++NT+I + F + S + ++ D T++ + + + +
Sbjct: 94 TPNPNVFVYNTMISAVSSSKNE-CFGLYSSMIRYRVSPDRQTFLHLMKASSFLSEV---- 148
Query: 127 LGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+QIH H+ G + + +L+ FY + +KVF MP +++N MI GY
Sbjct: 149 --KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGY 206
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
Q AL L+ M+ D G++P + T++ +L L + G VHG++E+
Sbjct: 207 AKQG-----FGLEALELYYKMVSD--GIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIER 259
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ +++ + AL+DMY KC A F +++K++ +W M G G A
Sbjct: 260 RGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQ 319
Query: 306 RLLDSM--RDC-------------------------------GVKPNAVTFTSLFAACCH 332
+ D M RD VKP+ VT SL + +
Sbjct: 320 AVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAAN 379
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
G + G + + +E S ++D+ + G +E A+ + + D LW
Sbjct: 380 NGELSHG-RWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAF-MVFKTATEKDVPLWT 437
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPE 420
S+++ HG G++ ++ ++Q E
Sbjct: 438 SMITGFAFHG---YGQQALQLFKRMQEE 462
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 210/369 (56%), Gaps = 22/369 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L SC S LGRQIH H+ K + +V V ++L+ YA + I +
Sbjct: 158 NEFTFATVLTSC---IGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEAR 214
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F +P R + A+I+GY + AL LFR + + G++ T VL
Sbjct: 215 GIFQCLPERDVVSCTAIISGYAQLGLDEE-----ALELFRRLQRE--GMQSNYVTYTSVL 267
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ S L L+ G VH ++ ++ +P V + +L+DMYSKCG L A IF + E+
Sbjct: 268 TALSGLAALDHGKQVHNHLLRS-EVPSY-VVLQNSLIDMYSKCGNLTYARRIFDTLHERT 325
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLF 343
V++W AM G + HG+G E + L + M D VKP++VT ++ + C H GL ++G+ +F
Sbjct: 326 VISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIF 385
Query: 344 DNMKS-KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+M S K V+P KHY C+VD+LGRAG +E A+ F+ +P +P A +W LL AC+VH
Sbjct: 386 YDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHS 445
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ +GE VG LLQ++PE + ++V LSN+YASA RW DV S+R M K V
Sbjct: 446 NLDIGEFVGHQLLQIEPE--------NAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVT 497
Query: 463 TEPGSSILQ 471
EPG S ++
Sbjct: 498 KEPGRSWIE 506
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 173/357 (48%), Gaps = 24/357 (6%)
Query: 48 LYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLT-FDD 106
L T KA Q +++ + F + + N I T ++++L A +GL T F D
Sbjct: 8 LSSTHKAIFQKPRLL----STFPSNSHHVLNIHIHDTRLREALLHMAL---RGLDTNFQD 60
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+ V L C R ++ G+++H H+ K ++ V + T LI FY + + V
Sbjct: 61 YNTV--LNECLRKRAIRE---GQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHV 115
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD MP R+ +W AMI+ Y + A AL LF ML SG +P + T VL+
Sbjct: 116 FDVMPERNVVSWTAMISAYSQ-----RGYASQALSLFVQML--RSGTEPNEFTFATVLTS 168
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
G +H ++ K Y E V++G++L+DMY+K G + A IF + E++V+
Sbjct: 169 CIGSSGFVLGRQIHSHIIKLNY--EAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+ TA+ +G A G EA+ L ++ G++ N VT+TS+ A ++ G + +++
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL 286
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ V ++ + ++D+ + G+L A I + I W ++L + HG+
Sbjct: 287 L-RSEVPSYVVLQNSLIDMYSKCGNLTYARR-IFDTLHERTVISWNAMLVGYSKHGE 341
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 7/206 (3%)
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH +M KT Y+P V++ T L+ Y KC L +A +F M E+NV++WTAM +
Sbjct: 77 GQRVHAHMIKTHYLP--CVYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAY 134
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+ G ++A+ L M G +PN TF ++ +C + G + ++ K E H
Sbjct: 135 SQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHI-IKLNYEAH 193
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+ S ++D+ + G + EA +P + D + +++S + + L E+ ++
Sbjct: 194 VYVGSSLLDMYAKDGKIHEARGIFQCLP-ERDVVSCTAIISG---YAQLGLDEEALELFR 249
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYA 441
+LQ E + + ALS + A
Sbjct: 250 RLQREGMQSNYVTYTSVLTALSGLAA 275
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 198/320 (61%), Gaps = 17/320 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N++ +I YA ++ + KK+F++MP R +W +MI GY + A+ A+ L
Sbjct: 279 NIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE-----AVKL 333
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F++M+V S VKP + T+ LS + LG L+ G VH Y+ K + ++DVF+G +L+D
Sbjct: 334 FQEMMV--SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK--HDIKSDVFVGNSLID 389
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG ++ AL +F+ M+ ++ ++WT++ +G+A++G A+ + D M G+ P T
Sbjct: 390 MYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGT 449
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + AC H GLV++G+ F +M++ + + P +KHY C+VDLL R+G+L+ AYNFI +
Sbjct: 450 FVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKM 509
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PI PD ++WR LLSAC +HG++ L E V K LL L P + ++V S+ YA
Sbjct: 510 PIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPS--------NNGNYVLSSSTYAG 561
Query: 443 AERWPDVESVRKQMKVKRVE 462
++RW DV +RK M+V ++
Sbjct: 562 SDRWDDVIKIRKLMEVTNLQ 581
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 201/420 (47%), Gaps = 54/420 (12%)
Query: 19 TTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T+ + IK++HAQL+ + P +++I+ Y SPQS HFVF P L ++
Sbjct: 25 TSLNSIKELHAQLVRAQMHIDPSSISEVIKHYAL---SPQSLPKAHFVFNQIQRPTLLVW 81
Query: 78 NTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
N +I + P D++ + KG+ T++F SCAR +S + G+ + V
Sbjct: 82 NHMIHGLSKSDRPNDAIHFYNTMYYKGIQG-SHLTFIFLFKSCAR---VSDVRQGQMVRV 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
H K GF + V+ LIH Y +++ +KVFD M R +WN++I GY ++ K
Sbjct: 138 HSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKK 197
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
L LFR+M V+ TM+ +S + L E G + Y+++ + D
Sbjct: 198 -----VLDLFREM--QAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVV--D 248
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKN----------------------------- 284
+++G L+DMY + G +D A +F +M+EKN
Sbjct: 249 LYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPS 308
Query: 285 --VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
V++WT+M G ++ + EA++L M VKP+ +T + +AC H G ++ G +
Sbjct: 309 RDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAV 368
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
D ++ K ++ + + ++D+ + G +E+A + + D++ W S++S V+G
Sbjct: 369 HDYIR-KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR-DSVSWTSIISGLAVNG 426
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 205/368 (55%), Gaps = 20/368 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT V L +C + L++ G IH + + G + NV V T+L+ YA ++ +
Sbjct: 212 DSFTIVRVLSACTQLGDLNS---GEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKAR 268
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD MP + +W AMI GY + A+ LF M VKP T+V VL
Sbjct: 269 SVFDGMPEKDIVSWGAMIQGYALNGLPKE-----AIDLFLQM--QRENVKPDCYTVVGVL 321
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++LG LE G V G +++ ++ + +GTAL+D+Y+KCG + A +F M+EK+
Sbjct: 322 SACARLGALELGEWVSGLVDRNEFL--YNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKD 379
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ W A+ +G+A++G + L + G+KP+ TF L C HAGLV+EG F+
Sbjct: 380 RVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFN 439
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P I+HY C+VDLLGRAG L+EA+ I +P++ +AI+W +LL AC +H D
Sbjct: 440 SMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDT 499
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E K L++L+P S ++V LSNIY++ +W + VR M KR++
Sbjct: 500 QLAELALKQLIELEP--------WNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKP 551
Query: 465 PGSSILQT 472
PG S ++
Sbjct: 552 PGCSWIEV 559
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 200/386 (51%), Gaps = 38/386 (9%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFAL 113
T F+F PN+FL+NT+IR D ++ + S+G L ++FT+ F L
Sbjct: 61 DTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLP-NNFTFPFVL 119
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CAR L LG +IH V K GF +V V T+L+ YA + KVFD +P +
Sbjct: 120 KACARLLDLQ---LGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDK 176
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ +W A+I+GY K + A+ +FR +L + P T+V VLS +QLG L
Sbjct: 177 NVVSWTAIISGYIGVGKFRE-----AIDMFRRLL--EMNLAPDSFTIVRVLSACTQLGDL 229
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
G +H + + + +VF+GT+LVDMY+KCG ++ A +F M EK++++W AM
Sbjct: 230 NSGEWIHKCIMEMGMV--RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQ 287
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL---HLFDNMKSKW 350
G A++G EAI L M+ VKP+ T + +AC G +E G L D ++++
Sbjct: 288 GYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVD--RNEF 345
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG--- 407
P + + ++DL + G + A+ G+ K D ++W +++S ++G V +
Sbjct: 346 LYNPVLG--TALIDLYAKCGSMSRAWEVFKGMKEK-DRVVWNAIISGLAMNGYVKISFGL 402
Query: 408 ----EKVGKILLQLQPE-VTFVDVAC 428
EK+G ++P+ TF+ + C
Sbjct: 403 FGQVEKLG-----IKPDGNTFIGLLC 423
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 210/372 (56%), Gaps = 30/372 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T + + +CA +L G+ +H V K G V +LI+ Y + +
Sbjct: 163 NEVTLLSVVSACADMGALDE---GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS 219
Query: 165 KVFDQMPMRSSATWNAMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
++F++MP+RS +WN+M+ NGY ++K D FN L+ +G+ P T
Sbjct: 220 QLFEEMPVRSLVSWNSMVVIHNHNGY---AEKGMDL-FN--------LMKRAGINPDQAT 267
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV +L + GL +H Y+ + + D+ I TAL+++Y+K G L+ + IF
Sbjct: 268 MVALLRACTDTGLGRQAESIHAYIHRCGF--NADIIIATALLNLYAKLGRLNASEDIFEE 325
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+++++ + WTAM G A+H G EAI+L D M GV+ + VTFT L +AC H+GLVEEG
Sbjct: 326 IKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEG 385
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F+ M + VEP + HYSC+VDLLGR+G LE+AY I +P++P + +W +LL AC
Sbjct: 386 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACR 445
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
V+G+V LG++V + LL L P +++ LSNIY++A W D VR MK +
Sbjct: 446 VYGNVELGKEVAEQLLSLDPS--------DHRNYIMLSNIYSAAGLWRDASKVRALMKER 497
Query: 460 RVETEPGSSILQ 471
R+ PG S ++
Sbjct: 498 RLTRNPGCSFIE 509
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 27/322 (8%)
Query: 108 TYVFALGSCAR--FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
+ VFA+ SC +CS IH V K + + L+ Y ++
Sbjct: 67 SLVFAISSCTSVSYCS--------AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQR 118
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+MP + +WN++++G + NA R SG +P + T++ V+S
Sbjct: 119 LFDEMPNKDLVSWNSLMSGLSGRGYLG--ACLNAFCRMRTE----SGRQPNEVTLLSVVS 172
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ +G L+ G +HG + K + V +L++MY K G LD A +F M +++
Sbjct: 173 ACADMGALDEGKSLHGVVVKLGMSGKAKVV--NSLINMYGKLGFLDAASQLFEEMPVRSL 230
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLF 343
++W +M +G + + L + M+ G+ P+ T +L AC GL E +H +
Sbjct: 231 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAY 290
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ + G I + +++L + G L + + I + D I W ++L+ VH
Sbjct: 291 IH---RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-DRIAWTAMLAGYAVH-- 344
Query: 404 VALGEKVGKILLQLQPEVTFVD 425
A G + K+ + E VD
Sbjct: 345 -ACGREAIKLFDLMVKEGVEVD 365
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 197/353 (55%), Gaps = 18/353 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ ++ L G+ IH VTK G F + +L YA + + F++M + W
Sbjct: 196 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 255
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI+GY + + A+ LFR+M+ ++ TM + S+Q+G LE
Sbjct: 256 NAMISGYANNGYGEE-----AIKLFREMIT--KNIRVDSITMRSAVLASAQVGSLELARW 308
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ GY+ K+ Y +D F+ T L+DMY+KCG + A +F R+ +K+V+ W+ M G +H
Sbjct: 309 LDGYISKSEY--RDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLH 366
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G G EAI L + M+ GV PN TF L AC ++GLV+EG LF M G+EPH +H
Sbjct: 367 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH-GIEPHHQH 425
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSC+VDLLGRAG+L +AY+FIM +PIKP +W +LLSAC +H V LGE + L L
Sbjct: 426 YSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILD 485
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P T +V LSN+YASA W V +VR M K + + G S ++
Sbjct: 486 PYNT--------GHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIE 530
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 173/385 (44%), Gaps = 24/385 (6%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
H+ Q++ QLI + L L+ + H F P++ L+N +I+
Sbjct: 2 HLDQVYVQLIVSGLHKCRF---LMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIK 58
Query: 83 CTPPQDSV-----LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
++ V + +S+ + + FT+++ L +C S +G+QIH K
Sbjct: 59 GYTQKNIVDAPIRMYMDMQISQ--VHPNCFTFLYVLKACG---GTSVEGIGKQIHGQTFK 113
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF NV V +L+ YA IS + VFD++ R+ +W ++I+GY
Sbjct: 114 YGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD-----PM 168
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL +F++M VKP +V V++ + + L G +HG + K E D+ I
Sbjct: 169 EALNVFKEM--RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI- 225
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
+L MY+K G ++ A F+RM + N++ W AM +G A +G G EAI+L M ++
Sbjct: 226 -SLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIR 284
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
+++T S A G +E L D SK + ++D+ + G + A
Sbjct: 285 VDSITMRSAVLASAQVGSLELARWL-DGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARC 343
Query: 378 FIMGIPIKPDAILWRSLLSACNVHG 402
+ K D +LW ++ +HG
Sbjct: 344 VFDRVADK-DVVLWSVMIMGYGLHG 367
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 135/293 (46%), Gaps = 19/293 (6%)
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
D++ K F ++ WNA+I GY K+ + ++ DM +S V P
Sbjct: 34 DVNYAHKAFREVSEPDILLWNAIIKGYTQ-----KNIVDAPIRMYMDM--QISQVHPNCF 86
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T + VL + G +HG +TF Y ++VF+ +LV MY+K G + A ++F
Sbjct: 87 TFLYVLKACGGTSVEGIGKQIHG---QTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVF 143
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
++ ++ V++WT++ +G +G EA+ + MR C VKP+ + S+ A + +
Sbjct: 144 DKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLG 203
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+G + + +K G+E + + + G L E F KP+ ILW +++S
Sbjct: 204 QGKSI-HGLVTKLGLEFEPDIVISLTTMYAKRG-LVEVARFFFNRMEKPNLILWNAMISG 261
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE--RWPD 448
+ + GE+ K+ ++ + VD + T V S S E RW D
Sbjct: 262 ---YANNGYGEEAIKLFREMITKNIRVD-SITMRSAVLASAQVGSLELARWLD 310
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 254/492 (51%), Gaps = 56/492 (11%)
Query: 24 IKQIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++Q+HAQ + + L + +L++ Y T + I F ++F++NT+I
Sbjct: 4 VRQLHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSI----FERIPYLDVFVYNTMI 59
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R P DS+L+F + G L D++TY F L +C+ +L G+Q+H + K
Sbjct: 60 RGLMLGKRPYDSLLLFNE-LLLGCLKPDNYTYTFVLKACSNQKALPE---GKQVHCQIIK 115
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------- 190
G N + ++LIH Y S+ I + V + ++ N+MI+GY S+
Sbjct: 116 AGISPNTHIHSSLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAM 175
Query: 191 ----KAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
KAKD A AL LF DM+V S P ++ +V +LS + LG
Sbjct: 176 FDQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMV--SHTLPNESALVSLLSACAHLG 233
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
L G +H Y+++ + + + TAL+DMY+KCG + + F +M ++++TW A+
Sbjct: 234 ALHQGRWIHAYIDRIG--ADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAI 291
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+G AI+G+ + L + M G+ PN V F ++ +AC HAG VEEG F+ M G
Sbjct: 292 ISGFAIYGQAKKCFELFEEMLADGIYPNGVIFVAILSACSHAGYVEEGKLYFNQMMVDLG 351
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ P I+HY C+VDLLGRAG L+EA FI+ +P KP++++W S+LSAC H D+ G
Sbjct: 352 IRPSIEHYGCMVDLLGRAGRLKEAEEFIISMPEKPNSVIWGSMLSACRTHNDLNRGSWAF 411
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNI-YASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ L++L+P S D L+ + + +A + +RK ++ + +ET GSS +
Sbjct: 412 RHLIELEPR---------SGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGMETTSGSSFI 462
Query: 471 QT--TTHYTLDG 480
+ T H L G
Sbjct: 463 EVDGTIHEFLVG 474
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 241/458 (52%), Gaps = 32/458 (6%)
Query: 25 KQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-R 82
KQIH + LK+ + L+ +Y KI H NL +++ +I
Sbjct: 337 KQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNH----NLIMWSAVISN 392
Query: 83 CT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
C P + L + + + GL D V L +C+ SL+ G QIH TK
Sbjct: 393 CAQSGCPTKALELFYEFKMEDGLA--DSGILVAVLRACS---SLTLKPEGMQIHGLATKM 447
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF+ +V V + L+ YA +D+ KKVF ++ + +WNA+I+GY +CA
Sbjct: 448 GFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQD-----ECADE 502
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL FRDM ++ ++P T+ C+LSV + L ++ VHGY+ + + V +
Sbjct: 503 ALKAFRDMQLE--EIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGL--GSTVLVSN 558
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L+ Y+KCG ++++L F +M E+N ++W ++ GM +H + +E I L D M G+KP
Sbjct: 559 SLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKP 618
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
+ VTFT++ +AC HAG V+EG F +M + ++P ++ Y+C+VDLLGRAGHL +AY+
Sbjct: 619 DHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDL 678
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
IM +P PD +W SLL +C HGD L E V + +L P V L+N
Sbjct: 679 IMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYR--------VLLAN 730
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476
+Y + + + VR ++K ++ +PG S ++ ++
Sbjct: 731 LYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDNNF 768
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 34/394 (8%)
Query: 20 TPSHIKQ--IHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
TP HI I ++ +L+ IQ + +K P STKI FV F
Sbjct: 27 TPHHISNLVIVTSPVSCSLRFQKFNYNPIQKWSSK---PLSTKIQTFVSVSFA------- 76
Query: 78 NTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
N +IR D++ V+ + G+ ++F Y L F L ++ GRQIH
Sbjct: 77 NNVIREYTEDGFFDDAIGVYLKMLDDGV-KVEEFRYFPCL--IKAFGGLCDVYKGRQIHG 133
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
HV K G + +V V +L+ Y + ++F++MP +WN MI+G+ +K+
Sbjct: 134 HVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGF----QKSM 189
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
D +L+ FR M+ + G+ P V + S L L G +HG + K+ E
Sbjct: 190 DYT-RSLMFFRSMVWEF-GIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEE- 246
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREK-----NVLTWTAMATGMAIHGKGNEAIRLL 308
++ ++L++MY KCG + NA IF+ + +K N + W M +G +G ++A+ L
Sbjct: 247 -YLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLF 305
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M G+KP+ T SLF+ C + + G + + K+G++ +I+ + ++D+ +
Sbjct: 306 IKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIH-GLIFKFGLKNNIRVETALLDMYLK 364
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G + I + I+W +++S C G
Sbjct: 365 CGDMGTGLK-IFRRSQNHNLIMWSAVISNCAQSG 397
>gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g09220, mitochondrial; Flags: Precursor
gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana]
gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana]
gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana]
gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana]
gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 229/465 (49%), Gaps = 70/465 (15%)
Query: 60 KIVHFVFTHF------------DPPNLFLFNTLIRCTPPQDSVLVFAYWV---------- 97
KI+H + +HF + LFLFN L+RC ++ L AY++
Sbjct: 51 KIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPL-HAYFLYDQLQRLHFL 109
Query: 98 ---SKGLLTFDDFTYVFAL--GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIH 152
+K L FD FTY+F L S RF SL +H K GF +V V T L+
Sbjct: 110 SDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLG---IGLHGLTLKLGFESHVYVQTALVG 166
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF--------------- 197
Y ++ KVFD+MP R+ TWN MI G + K F
Sbjct: 167 MYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTI 226
Query: 198 -----------NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
A++LF M V +KP + T++ +L LG L+ VH Y+ K
Sbjct: 227 IDGYARVDKPKEAILLFSRM-VACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKR 285
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM--REKNVLTWTAMATGMAIHGKGNEA 304
++P D+ + +L+D Y+KCGC+ +A F + KN+++WT M + AIHG G EA
Sbjct: 286 GFVP-CDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEA 344
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG-LHLFDNMKSKWGVEPHIKHYSCIV 363
+ + M G+KPN VT S+ AC H GL EE L F+ M +++ + P +KHY C+V
Sbjct: 345 VSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLV 404
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
D+L R G LEEA + IPI+ A++WR LL AC+V+ D L E+V + L++L+
Sbjct: 405 DMLRRKGRLEEAEKIALEIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLMELE----- 459
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
D+V +SNI+ R+ D + RKQM V+ V PG S
Sbjct: 460 ---RSHGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHS 501
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 202/387 (52%), Gaps = 17/387 (4%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+ + F + + +T + T + L +CA+ S S+L LG + + RG N+ +
Sbjct: 242 EEAMAFFEEMRRAKVTPNVSTMLSVLSACAQ--SGSSLQLGNWVRSWIEDRGLGSNIRLV 299
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI Y D+ +F+++ ++ +WN MI GY S C AL LFR M+
Sbjct: 300 NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMS-----CYKEALGLFRRMM 354
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
S + P D T + +L + LG L+ G VH Y++K +N V + T+L+DMY+KC
Sbjct: 355 Q--SNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKC 412
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A IF M K++ TW AM +G A+HG + A+ L M G P+ +TF +
Sbjct: 413 GDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVL 472
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC HAGL+ G F +M + V P + HY C++DL GRAG +EA + + +KPD
Sbjct: 473 TACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPD 532
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
+W SLL AC +H + L E V K L +L+PE +V LSNIYA A RW
Sbjct: 533 GAIWCSLLGACRIHRRIELAESVAKHLFELEPE--------NPSAYVLLSNIYAGAGRWE 584
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTT 474
DV +R ++ R++ PG S ++ +
Sbjct: 585 DVAKIRTRLNDNRMKKVPGCSSIEVDS 611
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/466 (27%), Positives = 212/466 (45%), Gaps = 65/466 (13%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST-KIVHFVFTHFDPPNLFLFNTLIR 82
+KQIH+Q+I L + + +C SP +F PN ++N +IR
Sbjct: 44 LKQIHSQIIKTGLHNTHFALSKLIEFCA--VSPHGDLSYALSLFKTIRNPNHVIWNHMIR 101
Query: 83 CTPPQDS-VLVFAYWV---SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+S L Y+V S G +++T+ SC + G+Q+H HV K
Sbjct: 102 GLSSSESPFLALEYYVHMISSGTEP-NEYTFPSIFKSCTKIRGAHE---GKQVHAHVLKL 157
Query: 139 GFMFNVLVATTLIHFYASNKD-------------------------------ISSGKKVF 167
G N V T+LI+ YA N + + +++F
Sbjct: 158 GLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELF 217
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D++P+R +WNAMI+GY +QS + ++ A+ F +M + V P +TM+ VLS
Sbjct: 218 DEIPVRDVVSWNAMISGY-AQSGRVEE----AMAFFEEM--RRAKVTPNVSTMLSVLSAC 270
Query: 228 SQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+Q G L+ G V ++E +++ + L+DMY KCG L+ A +F ++++KNV+
Sbjct: 271 AQSGSSLQLGNWVRSWIEDRGL--GSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVV 328
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLF- 343
+W M G EA+ L M + PN VTF S+ AC + G ++ G +H +
Sbjct: 329 SWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYV 388
Query: 344 -DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
NMKS ++ + ++ ++D+ + G L A + K A W +++S +HG
Sbjct: 389 DKNMKS---MKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLAT-WNAMISGFAMHG 444
Query: 403 --DVALGEKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIYASA 443
D ALG P ++TFV V AC ++L Y S+
Sbjct: 445 HTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSS 490
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 137/311 (44%), Gaps = 51/311 (16%)
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA--SNKDISSGKKVFDQMPMRSSATWNAM 181
TL +QIH + K G + LI F A + D+S +F + + WN M
Sbjct: 40 TLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHM 99
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I G S + F AL + M+ SG +P + T + +++ G VH
Sbjct: 100 IRGLSSS-----ESPFLALEYYVHMIS--SGTEPNEYTFPSIFKSCTKIRGAHEGKQVHA 152
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF--SRMRE----------------- 282
++ K E++ F+ T+L++MY++ G L NA L+F S MR+
Sbjct: 153 HVLKLGL--EHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFL 210
Query: 283 ------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
++V++W AM +G A G+ EA+ + MR V PN T S+ +AC
Sbjct: 211 DEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSAC 270
Query: 331 CHAGLVEEGLHLFDNMKSKW----GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+G L L + ++S W G+ +I+ + ++D+ + G LEEA N I K
Sbjct: 271 AQSG---SSLQLGNWVRS-WIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDK- 325
Query: 387 DAILWRSLLSA 397
+ + W ++
Sbjct: 326 NVVSWNVMIGG 336
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/477 (32%), Positives = 240/477 (50%), Gaps = 59/477 (12%)
Query: 34 NALKSPPLYAQLIQLYCTKKA-----------SPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
N + P ++A++I+ + + A + S + VF + PN++L+ +I
Sbjct: 41 NNAQVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVFRYVSNPNVYLYTAMID 100
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
D V ++ + +L D++ L +C L R+IH V K
Sbjct: 101 GFVSSGRSADGVSLYHRMIHSSVLP-DNYVITSVLKACG-------LDECREIHSQVLKL 152
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF + V L+ Y + +++ KKVFD+MP R MIN Y C
Sbjct: 153 GFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECG-----CIKE 207
Query: 199 ALVLFRDMLVD--------VSG-VKPTDTTMVCVLSVSSQLGLLEF----------GACV 239
AL LF+D+ + + G V+ + L QL + GA V
Sbjct: 208 ALELFQDVKIKDTVCWTAMIDGLVRNREMNKALELFREMQLSVFYLPARIWVRWSSGAGV 267
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H ++E N F+G AL++MYS+CG ++ A +F MR+K+V+++ M +G+A+HG
Sbjct: 268 HSFVENQKMELSN--FVGNALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAMHG 325
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
EAI + M + G +PN VT +L AC H GL++ GL +F++M + VEP I+HY
Sbjct: 326 ASVEAINVFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHY 385
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ- 418
CIVDLLGR G LEEAY FI + I+PD I+ +LLSAC +HG++ LGEK+ K L + +
Sbjct: 386 GCIVDLLGRVGRLEEAYRFIENMLIEPDHIMLGALLSACKIHGNMELGEKIAKRLFESEN 445
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
P+ S +V LS+IYAS+ +W + +R+ M+ +E EPG S ++
Sbjct: 446 PD---------SGTYVLLSHIYASSGKWKESTEIRESMRESGIEKEPGCSTIEVDNQ 493
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 247/466 (53%), Gaps = 45/466 (9%)
Query: 26 QIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
Q+HA L++ + S +Y + LI +Y + S VF+ NL +N+LI C
Sbjct: 168 QVHA-LVSKSRYSTDVYMGSALIDMY----SKCGSVACAEEVFSGMIERNLVTWNSLITC 222
Query: 84 ----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P +++ VF + GL D+ T + +CA C+L G QIH V K
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEP-DEVTLASVVSACASLCALKE---GLQIHARVVKTN 278
Query: 140 -FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
F ++++ L+ YA ++ ++VFD+M +R+ + +M++GY +++ K F
Sbjct: 279 KFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY-ARAASVKAARF- 336
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-------- 250
+F M + + +++ +Q G E + +++ P
Sbjct: 337 ---MFSKM------TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNL 387
Query: 251 -ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
++D+F+G +L+DMY KCG +++ +F +M+E++ ++W A+ G A +G G EA+++
Sbjct: 388 LKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFR 447
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M CG KP+ VT + AC HAGLVEEG H F +M+ G+ P HY+C+VDLLGRA
Sbjct: 448 KMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEH-GLIPLKDHYTCMVDLLGRA 506
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G L EA N I +P+ PDA++W SLL+AC VHG++ +G+ + LL++ P
Sbjct: 507 GCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDP--------WN 558
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
S +V LSN+YA RW DV VRK M+ + V +PG S ++ +
Sbjct: 559 SGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESR 604
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 26/281 (9%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN----- 183
R +H + F + + LI Y + +K+FD+MP R++ TWN++I+
Sbjct: 35 RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94
Query: 184 GYCSQSKK-------AKDCAFNALV-------LFRDMLVDVSGVKPTD-----TTMVCVL 224
G+ ++ + C++N++V F + L + D + L
Sbjct: 95 GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S + L L G VH + K+ Y DV++G+AL+DMYSKCG + A +FS M E+N
Sbjct: 155 SACAGLMDLNMGTQVHALVSKSRY--STDVYMGSALIDMYSKCGSVACAEEVFSGMIERN 212
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++TW ++ T +G +EA+ + M D G++P+ VT S+ +AC ++EGL +
Sbjct: 213 LVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHA 272
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ + + +VD+ + + EA + I+
Sbjct: 273 RVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 35/342 (10%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
+++++ AL +CA L L +G Q+H V+K + +V + + LI Y+ ++
Sbjct: 145 LNEYSFGSALSACA---GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACA 201
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
++VF M R+ TWN++I Y Q+ A + AL +F M+ SG++P + T+ V
Sbjct: 202 EEVFSGMIERNLVTWNSLITCY-EQNGPASE----ALEVFVRMMD--SGLEPDEVTLASV 254
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S + L L+ G +H + KT +D+ +G ALVDMY+KC ++ A +F RM +
Sbjct: 255 VSACASLCALKEGLQIHARVVKTNKF-RDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV++ T+M +G A A + M + N V++ +L A G EE L LF
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKM----TQRNVVSWNALIAGYTQNGENEEALRLF 369
Query: 344 DNMKSKWGVEPHIKHYS-------------CIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
+K + + P HY+ ++D+ + G +E+ + + D +
Sbjct: 370 RLLKRE-SIWP--THYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER-DCVS 425
Query: 391 WRSLL--SACNVHGDVALGEKVGKILLQLQPE-VTFVDVACT 429
W +++ A N +G AL ++ +P+ VT + V C
Sbjct: 426 WNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCA 467
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 215/406 (52%), Gaps = 23/406 (5%)
Query: 72 PNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P FL+N + IR P D++ V+ V +L D ++ + + + + L
Sbjct: 80 PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLP-DRYSLPIVIKAAVQIHDFT---L 135
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H + GF+ + + I Y + + +KVFD+ P R +WNA+I G
Sbjct: 136 GKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNH 195
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A A+ +F DM SG++P D TMV V + LG L +H + +
Sbjct: 196 AGR-----ANEAVEMFVDM--KRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAK 248
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
++D+ + +L+DMY KCG +D A IF MR++NV++W++M G A +G EA+
Sbjct: 249 TEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALEC 308
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
MR+ GV+PN +TF + +AC H GLVEEG F MKS++ +EP + HY CIVDLL
Sbjct: 309 FRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLS 368
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
R G L+EA + +P+KP+ ++W L+ C GDV + E V +++L+P V
Sbjct: 369 RDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGV--- 425
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+V L+N+YA W DVE VRK MK K+V P S TT
Sbjct: 426 -----YVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYASTT 466
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 197/345 (57%), Gaps = 17/345 (4%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH + K + V LI Y+ + +K+ D++ ++ +WNA+I+G+ Q +
Sbjct: 452 IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQ 511
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ A F ML GV P + T +L + L +E G +H + K
Sbjct: 512 SEE-----AQKTFSKMLE--MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKEL-- 562
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
++D +I + LVDMYSKCG + + LIF + ++ +TW AM G A HG G EA+++ +
Sbjct: 563 QSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY 622
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M+ VKPN TF ++ AC H GLVE+GLH F +M S +G++P ++HYSC+VD++GR+G
Sbjct: 623 MQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSG 682
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
+ +A I G+P + DA++WR+LLS C +HG+V + EK +LQL+PE S
Sbjct: 683 QVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPE--------DS 734
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
+V LSNIYA+A W +V +RK M+ ++ EPG S ++ +
Sbjct: 735 AAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSE 779
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 30/301 (9%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
FD T+ L SC+ SL G QIH K GF +V+ + L+ YA K +
Sbjct: 172 FDRTTFAVVLKSCS---SLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCS 228
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+ F MP ++ +W+A+I G C Q+ + L LF++M +GV + +T V
Sbjct: 229 IQFFHSMPEKNWVSWSAIIAG-CVQNDDLR----GGLELFKEM--QKAGVGVSQSTFASV 281
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+ L L G+ +HG+ KT + DV IGTA +DMY KC L +A +F+ +
Sbjct: 282 FRSCAGLSALRLGSQLHGHALKTDF--GTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNH 339
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N+ ++ A+ G A D G+ + V+ + F AC EGL +
Sbjct: 340 NLQSYNAIIVGYA--------------RSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVH 385
Query: 344 D-NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+MKS + +I + I+D+ G+ G L EA + + DA+ W ++++A +G
Sbjct: 386 GLSMKSL--CQSNICVANAILDMYGKCGALVEAC-LVFEEMVSRDAVSWNAIIAAHEQNG 442
Query: 403 D 403
+
Sbjct: 443 N 443
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 124/281 (44%), Gaps = 29/281 (10%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q H + F V V LI Y D+ KVFD MP R + +WNAM+ GY
Sbjct: 61 GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120
Query: 188 Q-----SKKAKDC-------AFNALVLF------RDMLVDV------SGVKPTDTTMVCV 223
+ ++K D ++N+L+ ++DV G TT V
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L S L G +HG K + + DV G+AL+DMY+KC LD ++ F M EK
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGF--DCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK 238
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N ++W+A+ G + + L M+ GV + TF S+F +C + G L
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLH 298
Query: 344 DN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ +K+ +G + I + +D+ + +L +A +P
Sbjct: 299 GHALKTDFGTDVVIG--TATLDMYMKCNNLSDAQKLFNSLP 337
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 44/312 (14%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ SCA LS L LG Q+H H K F +V++ T + Y ++S +K+F
Sbjct: 277 TFASVFRSCA---GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ +P + ++NA+I GY K G+ + ++
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDK---------------------GLGLDEVSLSGAFRAC 372
Query: 228 SQL-GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ + G LE G VHG K+ + ++++ + A++DMY KCG L A L+F M ++ +
Sbjct: 373 AVIKGDLE-GLQVHGLSMKS--LCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAV 429
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT-----SLFAACCHAGLVEEGLH 341
+W A+ +G + + L R + +F +++ C G++E+
Sbjct: 430 SWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKC---GMMEKAEK 486
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSAC 398
L D + E + ++ I+ EEA ++ ++ + + PD + ++L C
Sbjct: 487 LHDRL-----AEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTC 541
Query: 399 NVHGDVALGEKV 410
V LG+++
Sbjct: 542 ANLVTVELGKQI 553
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+FTY L +CA +L T+ LG+QIH + K+ + +++TL+ Y+ ++ +
Sbjct: 530 DNFTYATILDTCA---NLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQ 586
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F++ P R TWNAM+ GY + AL +F M ++ VKP T + VL
Sbjct: 587 LIFEKAPNRDFVTWNAMVCGYAQHGLGEE-----ALKIFEYMQLE--NVKPNHATFLAVL 639
Query: 225 SVSSQLGLLEFGA-CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-E 282
+GL+E G H + P+ + + + +VD+ + G + AL + M E
Sbjct: 640 RACGHMGLVEKGLHYFHSMLSNYGLDPQLEHY--SCVVDIMGRSGQVSKALELIEGMPFE 697
Query: 283 KNVLTWTAMATGMAIHG 299
+ + W + + IHG
Sbjct: 698 ADAVIWRTLLSICKIHG 714
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 23/227 (10%)
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
KPT C++ + + LEF V M P+ D A++ Y+ G + A
Sbjct: 74 KPTVFVTNCLIQMYIKCSDLEFAFKVFDGM------PQRDTVSWNAMLFGYAGRGDIGVA 127
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-- 331
+F M E++V++W ++ +G +G + I + M G + TF + +C
Sbjct: 128 QKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSL 187
Query: 332 --HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
H G ++ +H + K G + + S ++D+ + L+ + F +P K + +
Sbjct: 188 EDHGGGIQ--IH---GLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK-NWV 241
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
W ++++ C + D+ G L+L E+ V + F ++
Sbjct: 242 SWSAIIAGCVQNDDLRGG-------LELFKEMQKAGVGVSQSTFASV 281
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/423 (33%), Positives = 208/423 (49%), Gaps = 44/423 (10%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFA----------------------- 112
L N IRC QD+ VF + ++++ FA
Sbjct: 628 LINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPV 687
Query: 113 ---LGSCARFC-SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
S + C S + L G+++ H+ G+ + V LI Y+ + ++ +KVFD
Sbjct: 688 KSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFD 747
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+MP R +WN MI GY L + GV + V +L+ S
Sbjct: 748 KMPNRDIMSWNKMIAGYAQN-------GLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
LE G VH + K + DV +G AL+ MY+KCG L+ A +F EKNV+TW
Sbjct: 801 SFSALEEGKRVHAEIVKR--KMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTW 858
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
AM A HG ++A+ + M G+KP+ TFTS+ +AC H+GLV EG +F +++S
Sbjct: 859 NAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLES 918
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ G+ P I+HY C+V LLGRAG +EA I +P PDA +W +LL AC +HG+VAL E
Sbjct: 919 QHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAE 978
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
L+L V +V LSN+YA+A RW DV +R+ M+ + + EPG S
Sbjct: 979 HAANNALKLNARNPAV--------YVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 1030
Query: 469 ILQ 471
++
Sbjct: 1031 WIE 1033
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/426 (24%), Positives = 195/426 (45%), Gaps = 36/426 (8%)
Query: 15 LKAITTPSHI---KQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L A +P+ + K+IH+++I + P + L+ +Y + P + + VF+
Sbjct: 190 LTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQ----VFSGIY 245
Query: 71 PPNLFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
++ +NT++ ++ + +F S+G+ D TY+ L + F + S L
Sbjct: 246 RRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPP-DKVTYINLLDA---FTTPSMLD 301
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
G++IH G ++ V T L + D++ K+ + R +NA+I
Sbjct: 302 EGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALA 361
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ AF R GV TT + VL+ S L G +H ++ +
Sbjct: 362 QHGHYEE--AFEQYYQMRS-----DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV 414
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ +DV IG +L+ MY++CG L A +F+ M ++++++W A+ G A EA++
Sbjct: 415 GH--SSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK 472
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M+ GVKP VTF L +AC ++ +G + +++ + G++ + + ++++
Sbjct: 473 LYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL-RSGIKSNGHLANALMNMY 531
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------ 420
R G + EA N G + D I W S+++ HG E K+ L+++ E
Sbjct: 532 RRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQHGSY---EAAYKLFLEMKKEGLEPDK 587
Query: 421 VTFVDV 426
+TF V
Sbjct: 588 ITFASV 593
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 178/402 (44%), Gaps = 32/402 (7%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKG 100
LI +Y P++ ++ F +L +N +I R +++ ++ S+G
Sbjct: 426 LISMYARCGDLPRAREL----FNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG 481
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
+ T++ L +C + S G+ IH + + G N +A L++ Y I
Sbjct: 482 VKP-GRVTFLHLLSACTNSSAYSD---GKMIHEDILRSGIKSNGHLANALMNMYRRCGSI 537
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ VF+ R +WN+MI G+ A LF +M + G++P T
Sbjct: 538 MEAQNVFEGTRARDIISWNSMIAGHAQHGSYEA-----AYKLFLEMKKE--GLEPDKITF 590
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VL LE G +H + ++ + DV +G AL++MY +CG L +A +F +
Sbjct: 591 ASVLVGCKNPEALELGRQIHMLIIESGL--QLDVNLGNALINMYIRCGSLQDAYEVFHSL 648
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
R +NV++WTAM G A G+ +A L M++ G KP TF+S+ AC + ++EG
Sbjct: 649 RHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGK 708
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ ++ + G E + ++ ++G + +A +P + D + W +++
Sbjct: 709 KVIAHILNS-GYELDTGVGNALISAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAGYAQ 766
Query: 401 HGDVALGEKVGKILLQLQPE------VTFVDVACTSEDFVAL 436
+G LG + Q+Q + +FV + F AL
Sbjct: 767 NG---LGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSAL 805
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 139/295 (47%), Gaps = 14/295 (4%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
YV + +C R SL+ ++IH + + G ++ ++ LI+ Y + +S +VF
Sbjct: 84 AYVDLVQNCTRKRSLAE---AKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVF 140
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+MP R +WN++I+ Y Q K K A LF +M +G P+ T + +L+
Sbjct: 141 LKMPRRDVISWNSLISCYAQQGFKKK-----AFQLFEEM--QTAGFIPSKITYISILTAC 193
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LE+G +H + + Y + D + +L++MY KC L +A +FS + ++V++
Sbjct: 194 CSPAELEYGKKIHSKIIEAGY--QRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS 251
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+ M A E I L M G+ P+ VT+ +L A +++EG + +
Sbjct: 252 YNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH-KLA 310
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G+ I+ + + + R G + A + + D +++ +L++A HG
Sbjct: 311 VNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAALAQHG 364
>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
Length = 580
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/453 (33%), Positives = 236/453 (52%), Gaps = 29/453 (6%)
Query: 24 IKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQ HA+L+ + S PL +L T + + + P+ FLF +L R
Sbjct: 23 LKQAHARLVVSGHGDSLPLITKLA----TLAVAAGAASYARLLAASHPAPDSFLFCSLTR 78
Query: 83 CTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
T + + L F + L F F + +CA LS + G IH H G
Sbjct: 79 ATARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACA---DLSAIRAGMGIHAHAVLLG 135
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
N V T+L+ Y+ + +K+FD + +S WNAMI+GY + A A
Sbjct: 136 LGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGY-----EQNGLAGRA 190
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ ++R+M ++G P T V LS +Q G L+ G V + E +V +G A
Sbjct: 191 IEVYREM--QMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERM--EMNVVLGAA 246
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LV+MY++CG ++ A F+ ++E+NV+TWT+M G +HG G EA++L + MR G PN
Sbjct: 247 LVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPN 306
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF ++ +AC HAGLV EG F +MKS +G+ P ++HY +VD+ GRAG L++A FI
Sbjct: 307 DVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFI 366
Query: 380 M-GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
IP +P +W ++L AC +H D LG +V + L+ L+PE + V LSN
Sbjct: 367 HDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPE--------SPSHRVLLSN 418
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+YA + + VE VR M +R++ G S+++
Sbjct: 419 LYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIE 451
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 198/320 (61%), Gaps = 17/320 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N++ +I YA ++ + KK+F++MP R +W +MI GY + A+ A+ L
Sbjct: 238 NIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE-----AVKL 292
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F++M+V S VKP + T+ LS + LG L+ G VH Y+ K + ++DVF+G +L+D
Sbjct: 293 FQEMMV--SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK--HDIKSDVFVGNSLID 348
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG ++ AL +F+ M+ ++ ++WT++ +G+A++G A+ + D M G+ P T
Sbjct: 349 MYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGT 408
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + AC H GLV++G+ F +M++ + + P +KHY C+VDLL R+G+L+ AYNFI +
Sbjct: 409 FVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKM 468
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PI PD ++WR LLSAC +HG++ L E V K LL L P + ++V S+ YA
Sbjct: 469 PIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPS--------NNGNYVLSSSTYAG 520
Query: 443 AERWPDVESVRKQMKVKRVE 462
++RW DV +RK M+V ++
Sbjct: 521 SDRWDDVIKIRKLMEVTNLQ 540
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 187/399 (46%), Gaps = 53/399 (13%)
Query: 39 PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFA 94
P +++I+ Y SPQS HFVF P L ++N +I + P D++ +
Sbjct: 5 PSSISEVIKHYAL---SPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYN 61
Query: 95 YWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY 154
KG+ T++F SCAR +S + G+ + VH K GF V+ LIH Y
Sbjct: 62 TMYYKGIQG-SHLTFIFLFKSCAR---VSDVRQGQMVRVHSMKLGFESXSFVSNALIHMY 117
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
+++ +KVFD M R +WN++I GY ++ K L LFR+M V+
Sbjct: 118 VCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKK-----VLDLFREM--QAINVR 170
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
TM+ +S + L E G + Y+++ + D+++G L+DMY + G +D A
Sbjct: 171 ADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVV--DLYLGNTLIDMYGRRGMIDFAG 228
Query: 275 LIFSRMREKN-------------------------------VLTWTAMATGMAIHGKGNE 303
+F +M+EKN V++WT+M G ++ + E
Sbjct: 229 RVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAE 288
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A++L M VKP+ +T + +AC H G ++ G + D ++ K ++ + + ++
Sbjct: 289 AVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIR-KHDIKSDVFVGNSLI 347
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
D+ + G +E+A + + D++ W S++S V+G
Sbjct: 348 DMYCKCGVVEKALQVFNDMKTR-DSVSWTSIISGLAVNG 385
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/451 (34%), Positives = 236/451 (52%), Gaps = 29/451 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
KQ+H + + L S A L+ +Y +K + V H D L +N++I
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMY-SKMGCAYFAREVFNDMKHLD---LISWNSMISS 361
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYV-FALGSCARFCS-LSTLWLGRQIHVHVTK 137
+ + ++SV +F + +GL D FT L + A+ C L L G+QIH H K
Sbjct: 362 CAQSSLEEESVNLFIDLLHEGLKP-DHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK 420
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF ++ V + ++ Y D+ + VF+ + W +MI+G + +
Sbjct: 421 AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQ---- 476
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL ++ M S V P + T ++ SS + LE G +H + K + +D F+G
Sbjct: 477 -ALRIYHRM--RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV--SDPFVG 531
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T+LVDMY+KCG +++A +F +M +N+ W AM G+A HG EA+ L SM+ G++
Sbjct: 532 TSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE 591
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ V+F + +AC HAGL E +M + +G+EP I+HYSC+VD LGRAG ++EA
Sbjct: 592 PDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADK 651
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I +P K A + R+LL AC + GDV G++V L L+P S +V LS
Sbjct: 652 VIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEP--------FDSAAYVLLS 703
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSS 468
NIYA+A RW DV RK MK K V+ +PG S
Sbjct: 704 NIYAAANRWDDVTDARKMMKRKNVKKDPGFS 734
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 184/362 (50%), Gaps = 29/362 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+F+ L C + L LG+Q+H K G +V VA +L++ Y+ +
Sbjct: 283 DEFSVQLILNGCL-WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAR 341
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV- 223
+VF+ M +WN+MI+ C+QS ++ ++ LF D+L + G+KP T+ +
Sbjct: 342 EVFNDMKHLDLISWNSMISS-CAQSSLEEE----SVNLFIDLLHE--GLKPDHFTLASIT 394
Query: 224 LSVSSQ----LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
L+ +++ L LL+ G +H + K + ++D+ + + ++DMY KCG + NA ++F+
Sbjct: 395 LATAAKACGCLVLLDQGKQIHAHAIKAGF--DSDLHVNSGILDMYIKCGDMVNAGIVFNY 452
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ + + WT+M +G +G ++A+R+ MR V P+ TF +L A +E+G
Sbjct: 453 ISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG 512
Query: 340 LHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
L N +K +P + + +VD+ + G++E+AY + ++ A LW ++L
Sbjct: 513 RQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNVRNIA-LWNAMLVGL 569
Query: 399 NVHGDVALGEKVGKILLQ--LQPE-VTFVDV--AC-----TSEDFVALSNIYASAERWPD 448
HG+ + K + ++P+ V+F+ + AC TSE + L ++ P+
Sbjct: 570 AQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPE 629
Query: 449 VE 450
+E
Sbjct: 630 IE 631
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 131/283 (46%), Gaps = 14/283 (4%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L LG+ H + G + ++ L+ Y+ +SS ++VFD P R TWNA
Sbjct: 89 STHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNA 148
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++ Y + A L LFR L+ S T T+ VL + G L VH
Sbjct: 149 ILGAYAASVDSNDGNAQEGLHLFR--LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVH 206
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY K E DVF+ ALV++YSKCG + +A L+F MRE++V+ W M G G
Sbjct: 207 GYAIKIGL--EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL--VEEGLHLFDNMKSKWGVEPHIKH 358
EA +L G++P+ + + C AG +E G + + K G++ +
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVH-GIAVKSGLDSDVSV 323
Query: 359 YSCIVDLLGRAG---HLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ +V++ + G E +N + + D I W S++S+C
Sbjct: 324 ANSLVNMYSKMGCAYFAREVFNDMKHL----DLISWNSMISSC 362
>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g01510, mitochondrial; Flags: Precursor
gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 584
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 240/446 (53%), Gaps = 32/446 (7%)
Query: 19 TTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
+ P +K+IHA ++ + L QL++ + + VF P +FL+
Sbjct: 22 SKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQ----VFDEMHKPRIFLW 77
Query: 78 NTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NTL +R P +S+L++ G+ D+FTY F + + ++ S G +H
Sbjct: 78 NTLFKGYVRNQLPFESLLLYKKMRDLGVRP-DEFTYPFVVKAISQLGDFSC---GFALHA 133
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
HV K GF +VAT L+ Y ++SS + +F+ M ++ WNA + C Q+ +
Sbjct: 134 HVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFL-AVCVQTGNSA 192
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL F M D V+ T+V +LS QLG LE G ++ K + +
Sbjct: 193 I----ALEYFNKMCAD--AVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKE--EIDCN 244
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+ + A +DM+ KCG + A ++F M+++NV++W+ M G A++G EA+ L +M++
Sbjct: 245 IIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQN 304
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM--KSKWGVEPHIKHYSCIVDLLGRAGH 371
G++PN VTF + +AC HAGLV EG F M + +EP +HY+C+VDLLGR+G
Sbjct: 305 EGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGL 364
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
LEEAY FI +P++PD +W +LL AC VH D+ LG+KV +L++ P++
Sbjct: 365 LEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDI--------GS 416
Query: 432 DFVALSNIYASAERWPDVESVRKQMK 457
V LSNIYA+A +W V+ VR +M+
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMR 442
>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
Length = 470
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 236/445 (53%), Gaps = 23/445 (5%)
Query: 25 KQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+Q HA+ + L L L+ +YC + VF P++ +N L+
Sbjct: 26 EQAHARAVVGGWLPDATLETDLVLMYCRCG----ERRRARRVFDGMRAPSMHAYNVLLAA 81
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN 143
+PP+D++ VF+ ++ GL D ++ + +CA L LG IH + G M N
Sbjct: 82 SPPRDAMEVFSRLLASGLRP-DGYSVPAVVRACA---ELPDAVLGGVIHGFAVRLGLMGN 137
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
V+VA L+ YA + +VFD+M R + WN M+ GY + A +F
Sbjct: 138 VVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARAGR-----AVETFEIF 192
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
V+ + + VL++ ++ G L G +HG M + ++D+ +G AL++M
Sbjct: 193 SRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIHGRMVRCLAF-DSDIAVGNALINM 251
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y+KCG ++ + +FS M++++V++W+ M +IHGKG +A+++ M GVKPN +TF
Sbjct: 252 YAKCGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITF 311
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
TS+ ++C H+GLV EG +F++M GV P +HY+C+VDLLGRAG +EEA I +P
Sbjct: 312 TSVLSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMP 371
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
++P A +W +LLSAC +H +V +GE L +L+ ++ ++V L IY +
Sbjct: 372 MEPCASVWGALLSACAMHNNVDVGEIAAFRLFELEEG--------SASNYVTLCGIYDAV 423
Query: 444 ERWPDVESVRKQMKVKRVETEPGSS 468
+ V +R +M+ + PG S
Sbjct: 424 GQSDGVAGLRSRMRELGMVKTPGCS 448
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 136/317 (42%), Gaps = 27/317 (8%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q H G++ + + T L+ Y + ++VFD M S +N ++
Sbjct: 25 GEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRAPSMHAYNVLL----- 79
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
A +A+ +F +L SG++P ++ V+ ++L G +HG+ +
Sbjct: 80 ----AASPPRDAMEVFSRLL--ASGLRPDGYSVPAVVRACAELPDAVLGGVIHGFAVRLG 133
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
M +V + AL+DMY+K G LD+A+ +F M E++ + W M G A G+ E +
Sbjct: 134 LM--GNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARAGRAVETFEI 191
Query: 308 LDSMRDCGVK--PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ V S+ C G + +G + M + I + ++++
Sbjct: 192 FSRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINM 251
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE----- 420
+ G + + G+ + D + W +++ + ++HG GE+ K+ +++ E
Sbjct: 252 YAKCGRVNVSQAVFSGMQQR-DVVSWSTMIHSYSIHGK---GEQALKVYMEMLSEGVKPN 307
Query: 421 -VTFVDV--ACTSEDFV 434
+TF V +C+ V
Sbjct: 308 WITFTSVLSSCSHSGLV 324
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 205/370 (55%), Gaps = 39/370 (10%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q+H K GF F+V V T L++ YA+ K+VFD+MP+R+S TWN I G
Sbjct: 109 GLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGLAK 168
Query: 188 QSKKAKDCAF--------------------------NALVLFRDMLVDVSGVKPTDTTMV 221
+ C+ AL LF M +D G+KPT+ T++
Sbjct: 169 WGELHLACSLLDEMPRPTVVSWTTIIDGYTRMNQPKQALALFLTMFLD-EGIKPTEITLL 227
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM- 280
+ S LG LE +H Y EK+ + +D+ I T+L+D Y+KCGC+++A +F +
Sbjct: 228 AIFPAISNLGALEICQLIHTYGEKS-GLNASDIRIRTSLLDTYAKCGCIESASGVFGEIA 286
Query: 281 -REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ +N+++WT++ + A+HG EA+ + M+ +KPN +TF S+ AC H GLVEEG
Sbjct: 287 AKGRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEG 346
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLLSAC 398
L LF M ++ + P +KHY C++D+LGRAG L+EA + IP + ++WR+LL AC
Sbjct: 347 LKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRTLLGAC 406
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+ HG+V +G +V + +L+++ + D+V LSNI+A R+ DVE VR+ M
Sbjct: 407 SFHGNVEMGARVTRKILEMERKY--------GGDYVLLSNIFAGVGRFWDVERVRRLMDE 458
Query: 459 KRVETEPGSS 468
+ PG S
Sbjct: 459 RNASKVPGLS 468
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/404 (34%), Positives = 210/404 (51%), Gaps = 56/404 (13%)
Query: 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ-- 169
AL +C+R ++ +GR +H K G V + LIH Y+S +I +++FD
Sbjct: 276 ALSACSRVLNVE---MGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGG 332
Query: 170 ------------------------------MPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
MP + +W+AMI+GY +C A
Sbjct: 333 ELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQH-----ECFSEA 387
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L LF++M + GV+P +T +V +S + L L+ G +H Y+ + + +V + T
Sbjct: 388 LALFQEM--QLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKL--QVNVILSTT 443
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+DMY KCGC++NAL +F M EK V TW A+ G+A++G +++ + M+ G PN
Sbjct: 444 LIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPN 503
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+TF + AC H GLV +G H F++M + +E +IKHY C+VDLLGRAG L+EA I
Sbjct: 504 EITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELI 563
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-VALSN 438
+P+ PD W +LL AC H D +GE++G+ L+QLQP+ + F V LSN
Sbjct: 564 DSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPD---------HDGFHVLLSN 614
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQT--TTHYTLDG 480
IYAS W +V +R M V PG S+++ T H L G
Sbjct: 615 IYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAG 658
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 120/482 (24%), Positives = 200/482 (41%), Gaps = 88/482 (18%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHF-----VFTH 68
L++ P H KQ+ +Q I L + P A +LI S ST +V F +F H
Sbjct: 10 LQSCKCPRHFKQLLSQTILTGLITDPYAASRLINF------SSHSTTLVPFHYSLRIFNH 63
Query: 69 FDPPNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
PN F +NT++R P ++L + +++ D +TY L CA S
Sbjct: 64 LRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKP-DSYTYPILLQCCAARVSE- 121
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
+ GRQ+H H GF +V V TL++ YA + S ++VF++ P+ +WN ++
Sbjct: 122 --FEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLA 179
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY Q G +E
Sbjct: 180 GYV------------------------------------------QAGEVEEA------- 190
Query: 244 EKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIFS--RMREKNVLTWTAMATGMAIHGK 300
E+ F MPE + +++ ++ + GC++ A IF+ R RE+++++W+AM + +
Sbjct: 191 ERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEM 250
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA+ L M+ GV + V S +AC VE G + K GVE ++ +
Sbjct: 251 GEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG-RWVHGLAVKVGVEDYVSLKN 309
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
++ L G + +A D I W S++S G + E +L PE
Sbjct: 310 ALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAE----MLFYSMPE 365
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV---ETEPGSSILQTTTHYT 477
V + A+ + YA E + + ++ ++M++ V ET S+I T T
Sbjct: 366 KDVV-------SWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLAT 418
Query: 478 LD 479
LD
Sbjct: 419 LD 420
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 12/204 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ V A+ +C L+TL LG+ IH ++++ NV+++TTLI Y + +
Sbjct: 402 DETALVSAISACTH---LATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENAL 458
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+VF M + +TWNA+I G + +L +F DM +G P + T + VL
Sbjct: 459 EVFYAMEEKGVSTWNAVILGLAMNGSVEQ-----SLNMFADM--KKTGTVPNEITFMGVL 511
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA-LLIFSRMREK 283
+GL+ G M + N G +VD+ + G L A LI S
Sbjct: 512 GACRHMGLVNDGRHYFNSMIHEHKIEANIKHYG-CMVDLLGRAGLLKEAEELIDSMPMAP 570
Query: 284 NVLTWTAMATGMAIHGKGNEAIRL 307
+V TW A+ H RL
Sbjct: 571 DVATWGALLGACRKHRDNEMGERL 594
>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial [Vitis vinifera]
gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 199/349 (57%), Gaps = 17/349 (4%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L+ G+ IH H + G ++ V TLI Y+ DI S + +FD M ++ +W AMI G
Sbjct: 274 LFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAG 333
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + + A+ LF M + G KP T++ ++S Q G LE G + Y
Sbjct: 334 YAEKGDLDE-----AMTLFSAM--EAVGEKPDLVTIISLMSGCGQTGALELGKWIDTY-- 384
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
T ++++ + AL+D+Y+KCG +DNA +F M EK++++WT + G A++G+ EA
Sbjct: 385 ATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEA 444
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ L M + G+KPN +TF ++ AC HAG +E+G F+ M + + P + HYSC+ D
Sbjct: 445 LGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMAD 504
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LLGR G L+EA+ FI +P KPD +W LLSAC +H +V +GE V L +L+P+
Sbjct: 505 LLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQ---- 560
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
T+ +V ++NIYASA +W V ++R MK + PG S++Q
Sbjct: 561 ----TAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVN 605
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 156/321 (48%), Gaps = 18/321 (5%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATW 178
SL L + IH K G +V V+ T I YA + + VFD + +++ +W
Sbjct: 167 SLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSW 226
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+MI GY + +K F F+ ML G + +T++ +LS Q +L G
Sbjct: 227 NSMIAGYAHFEQCSKAVGF-----FKKML--CGGFRADLSTILSLLSSCVQPEVLFHGKL 279
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H + + ++D+ + L+ MYSKCG + +A +F M K ++WTAM G A
Sbjct: 280 IHAHGIQV--GCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEK 337
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G +EA+ L +M G KP+ VT SL + C G +E G D + G++ ++
Sbjct: 338 GDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG-KWIDTYATANGLKDNLMV 396
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV--ALGEKVGKILLQ 416
+ ++D+ + G ++ A +P K + W +L++ C ++G+ ALG + L
Sbjct: 397 CNALIDVYAKCGSMDNARELFYTMPEK-SLVSWTTLIAGCALNGEFKEALGLFFQMVELG 455
Query: 417 LQPE-VTFVDV--ACTSEDFV 434
L+P +TF+ V AC F+
Sbjct: 456 LKPNHITFLAVLQACNHAGFL 476
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 17/226 (7%)
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
A WN+ I +Q A AL+LFR M +G++P + T V S+L L++
Sbjct: 20 AQWNSSITESVNQGY-----AHKALLLFRQM--KQNGLEPNNLTFPSVAKACSKLLNLKY 72
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
VH ++ K+ + + D+F+ T++VDMY KC L A +FSRM +++V +W +M G
Sbjct: 73 SQIVHTHVVKSRF--QADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGF 130
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGV 352
A G + + L M G++ ++VT L H+ L + L + +++ S K G+
Sbjct: 131 AQLGFVDRVVSLFCEMGIEGIRADSVTVIGL----THSALSLKDLKMLESIHSFGIKIGI 186
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK-PDAILWRSLLSA 397
+ + + + + G A GI + W S+++
Sbjct: 187 DTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAG 232
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 138/339 (40%), Gaps = 63/339 (18%)
Query: 115 SCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
S A+ CS L L + +H HV K F ++ V T+++ Y + +F +MP R
Sbjct: 59 SVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKR 118
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
A+WN+MI G+ + + LF +M + G++ T++ + + L L
Sbjct: 119 DVASWNSMILGFAQLGFVDR-----VVSLFCEM--GIEGIRADSVTVIGLTHSALSLKDL 171
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAM 291
+ +H + K + DV + + Y+KCG A +F + + K ++W +M
Sbjct: 172 KMLESIHSFGIKIGI--DTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSM 229
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCG----------------VKPNAV-------------- 321
G A + ++A+ M CG V+P +
Sbjct: 230 IAGYAHFEQCSKAVGFFKKML-CGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVG 288
Query: 322 ---------TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
T S+++ C G + +LFDNM K V ++ ++ G L
Sbjct: 289 CDSDIQVINTLISMYSKC---GDIGSARYLFDNMLGKTRVS-----WTAMIAGYAEKGDL 340
Query: 373 EEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+EA ++ + + KPD + SL+S C G + LG+
Sbjct: 341 DEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGK 379
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 210/372 (56%), Gaps = 30/372 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T + + +CA +L G+ +H V K G V +LI+ Y + +
Sbjct: 220 NEVTLLSVVSACADMGALDE---GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS 276
Query: 165 KVFDQMPMRSSATWNAMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
++F++MP+RS +WN+M+ NGY ++K D FN L+ +G+ P T
Sbjct: 277 QLFEEMPVRSLVSWNSMVVIHNHNGY---AEKGMDL-FN--------LMKRAGINPDQAT 324
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV +L + GL +H Y+ + + D+ I TAL+++Y+K G L+ + IF
Sbjct: 325 MVALLRACTDTGLGRQAESIHAYIHRCGF--NADIIIATALLNLYAKLGRLNASEDIFEE 382
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+++++ + WTAM G A+H G EAI+L D M GV+ + VTFT L +AC H+GLVEEG
Sbjct: 383 IKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEG 442
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F+ M + VEP + HYSC+VDLLGR+G LE+AY I +P++P + +W +LL AC
Sbjct: 443 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACR 502
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
V+G+V LG++V + LL L P +++ LSNIY++A W D VR MK +
Sbjct: 503 VYGNVELGKEVAEQLLSLDPS--------DHRNYIMLSNIYSAAGLWRDASKVRALMKER 554
Query: 460 RVETEPGSSILQ 471
R+ PG S ++
Sbjct: 555 RLTRNPGCSFIE 566
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 162/377 (42%), Gaps = 41/377 (10%)
Query: 59 TKIVH---FVFTHFD--PPNLFLFNTLIRCTPPQD-SVLVFAYWVSKGLLTFDDFTYVFA 112
T I H F F H D P FNT C ++ S + Y + + L VFA
Sbjct: 77 TSISHNRSFAFRHTDLIPKQFKRFNTNKGCCIFREASQFIVVYSIVQSL--------VFA 128
Query: 113 LGSCAR--FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
+ SC +CS IH V K + + L+ Y +++FD+M
Sbjct: 129 ISSCTSVSYCS--------AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 180
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
P + +WN++++G + NA R SG +P + T++ V+S + +
Sbjct: 181 PNKDLVSWNSLMSGLSGRGYLG--ACLNAFCRMRTE----SGRQPNEVTLLSVVSACADM 234
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G L+ G +HG + K + V +L++MY K G LD A +F M +++++W +
Sbjct: 235 GALDEGKSLHGVVVKLGMSGKAKVV--NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNS 292
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLFDNMKS 348
M +G + + L + M+ G+ P+ T +L AC GL E +H + +
Sbjct: 293 MVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIH--- 349
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ G I + +++L + G L + + I + D I W ++L+ VH A G
Sbjct: 350 RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-DRIAWTAMLAGYAVH---ACGR 405
Query: 409 KVGKILLQLQPEVTFVD 425
+ K+ + E VD
Sbjct: 406 EAIKLFDLMVKEGVEVD 422
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 195/329 (59%), Gaps = 17/329 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T ++ + + + + FD+MP R +W AMI+GY Q + K+ L L
Sbjct: 285 DVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYL-QVNRFKE----VLSL 339
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M + +KP + TMV +L+ + LG LE G + Y++K + D F+G AL+D
Sbjct: 340 FREM--QAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEI--KIDSFVGNALID 395
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY CG ++ A+ IF+ M ++ ++WTA+ G+AI+G G EA+ + M + P+ VT
Sbjct: 396 MYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVT 455
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ AC H+G+V++G F M ++ G+EP++ HY C+VDLLGRAGHL+EA+ I +
Sbjct: 456 CIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNM 515
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+KP++I+W SLL AC VH D + E + +L+L+PE V +V L NIYA+
Sbjct: 516 PVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAV--------YVLLCNIYAA 567
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
RW + VRK M + ++ PG S+++
Sbjct: 568 CNRWEKLHEVRKLMMDRGIKKTPGCSLIE 596
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 131/454 (28%), Positives = 217/454 (47%), Gaps = 58/454 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+K + + +KQIH+Q I L S P+ AQ+I C K + VF PN
Sbjct: 26 IKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCC--KHELGDMEYARMVFDTMPGPN 83
Query: 74 LFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
F++N +I R P +V ++ + +G++ D++TY F L RF + + GR
Sbjct: 84 HFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMP-DEYTYPFLL---KRFTRDTAVKCGR 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H H+ K GF NV V LIH Y+ + ++S + VFD+ TWN MI+GY ++S
Sbjct: 140 ELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGY-NRS 198
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
K+ + ++ LF +M + V P+ T+V VLS S+L L G VH Y++
Sbjct: 199 KQFDE----SMKLFDEM--ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIE 252
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG---------- 299
P + AL+DMY+ CG +D AL IF M+ ++V++WTA+ TG G
Sbjct: 253 PVR--VLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFD 310
Query: 300 ---------------------KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
+ E + L M+ +KP+ T S+ AC H G +E
Sbjct: 311 KMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALEL 370
Query: 339 GLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL-- 395
G + + K++ ++ + + ++D+ G++E+A +P + D I W +++
Sbjct: 371 GEWIKAYIDKNEIKIDSFVG--NALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTAVIFG 427
Query: 396 SACNVHGDVALGEKVGKILLQLQP-EVTFVDVAC 428
A N +G+ AL + + P EVT + V C
Sbjct: 428 LAINGYGEEALDMFSQMLKASITPDEVTCIGVLC 461
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 229/427 (53%), Gaps = 20/427 (4%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF 104
L+ +Y K + ++ H + D L + C ++ +F + +GL
Sbjct: 246 LLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFL 305
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ AL CA SL+ L +G Q+H + K G ++ + +L+ YA I+
Sbjct: 306 SATSVASALRVCA---SLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEAT 362
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
FD++ ++ + ++ A+++G C Q+ KA++ A ++F+ M ++P TMV ++
Sbjct: 363 MFFDEIAVKDTISYGALLSG-CVQNGKAEE----AFLVFKKM--QACNMEPDIATMVSLI 415
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S L L+ G C HG + E I +L+DMY+KCG +D + +F +M ++
Sbjct: 416 PACSHLAALQHGKCSHGSVIIRGLALETS--ICNSLIDMYAKCGKIDLSRQVFDKMPARD 473
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W M G IHG G EA L M++ G P+ VTF L AAC H+GLV EG H FD
Sbjct: 474 VVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFD 533
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M K+G+ P ++HY C+VDLL R G L+EAY FI +P+K D +W +LL AC +H ++
Sbjct: 534 TMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNI 593
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG++V +I+ +L PE T +FV LSNI+++A R+ + VR KVK +
Sbjct: 594 DLGKQVSRIIQKLGPEGT--------GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKS 645
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 646 PGYSWIE 652
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 160/348 (45%), Gaps = 26/348 (7%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTF----DDFTYVFALGSC 116
VF P+ +N LIR P ++ ++ + +L F + +T+ F L +C
Sbjct: 56 VFDRIPAPDARAYNALIRAYSWLGPFHAAIDLY-----RSMLRFRVAPNKYTFPFVLKAC 110
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
+ +L L GR IH H G ++ V+T LI Y + VF +MPMR
Sbjct: 111 S---ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WNAM+ GY + +A+ DM D G++P +T+V +L + +Q G L G
Sbjct: 168 AWNAMLAGYANHG-----MYHHAIAHLLDM-QDHGGLRPNASTLVSLLPLLAQHGALFQG 221
Query: 237 ACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+H Y + E V IGTAL+DMY+KC L A +F M +N +TW+A+ G
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281
Query: 296 AIHGKGNEAIRLLDSMRDCGV-KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ + EA L M G+ +A + S C + G L + +K G+
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH-ALIAKSGIHA 340
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + ++ + +AG + EA F I +K D I + +LLS C +G
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNG 387
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 15/248 (6%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSG 212
+ S ++ ++VFD++P + +NA+I Y F+A + L+R ML
Sbjct: 44 HISRGQLALARQVFDRIPAPDARAYNALIRAYSWLG------PFHAAIDLYRSMLR--FR 95
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V P T VL S L L G +H + D+F+ TAL+D+Y +C
Sbjct: 96 VAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGL--HTDLFVSTALIDLYIRCARFGP 153
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI-RLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F++M ++V+ W AM G A HG + AI LLD G++PNA T SL
Sbjct: 154 ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLA 213
Query: 332 HAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
G + +G +H + E + + ++D+ + L A G+P++ D +
Sbjct: 214 QHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-V 272
Query: 390 LWRSLLSA 397
W +L+
Sbjct: 273 TWSALIGG 280
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 196/353 (55%), Gaps = 18/353 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ + L G+ IH V K G + +L YA + + F+Q+ S W
Sbjct: 284 YTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFW 343
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI+GY A A+ LFR L+ ++P T+ ++ +Q+G LE
Sbjct: 344 NAMISGYVKNGY-----AEEAIELFR--LMKSKNIRPDSITVTSSIAACAQIGSLELARW 396
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ Y+ + + NDV + T+L+D Y+KCG +D A +F R+ +K+V+ W+AM G +H
Sbjct: 397 MDEYISMSEF--RNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLH 454
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+G E+I L +MR GV PN VTF L AC ++GLVEEG LF M+ +G+EP +H
Sbjct: 455 GQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQH 513
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y+C+VDLLGRAGHL+ AYNF+M +PI+P +W +LLSAC +H V LGE + L L
Sbjct: 514 YACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLD 573
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P T +V LSN+YAS+ W V VR M+ K + G S+++
Sbjct: 574 PYNT--------GHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIE 618
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 183/385 (47%), Gaps = 22/385 (5%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+H+ QI+A+L+ L+ LI K ++ +F F P++FL+N ++
Sbjct: 89 THLNQIYAKLLVTGLQYGGF---LIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIV 145
Query: 82 RCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
RC ++ ++A + ++ D F++ L +C+ +L L +GR++H + +
Sbjct: 146 RCYSRHGFFGHAIEMYAR-MQVACVSPDGFSFPCVLKACS---ALPALEMGRRVHGQIFR 201
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF +V V L+ YA +I VF ++ R+ +W ++I+GY +
Sbjct: 202 HGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQ-----PI 256
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL +F +M + V+P +V VL + + LE G +HG + K E D+ I
Sbjct: 257 EALRIFSEM--RKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLI- 313
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
+L +Y+KCG + A L F+++ +++ W AM +G +G EAI L M+ ++
Sbjct: 314 -SLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIR 372
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+++T TS AAC G +E D S + + ++D + G ++ A
Sbjct: 373 PDSITVTSSIAACAQIGSLELA-RWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARF 431
Query: 378 FIMGIPIKPDAILWRSLLSACNVHG 402
IP K D ++W +++ +HG
Sbjct: 432 VFDRIPDK-DVVVWSAMMVGYGLHG 455
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 232/431 (53%), Gaps = 29/431 (6%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKG 100
++ +YC A + K VF N +N +I+ +++ +F V +G
Sbjct: 368 ILDVYCKCGAVDSARK----VFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEG 423
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
+ D + + AL +C L L GR++H + + G NV V LI Y K
Sbjct: 424 V-DVTDVSVLAALHACG---ELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRT 479
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+VFD++ ++ +WNAMI G C+Q+ ++D A+ LF M ++ VKP T+
Sbjct: 480 DLAAQVFDELGYKTRVSWNAMILG-CTQNGSSED----AVRLFSRMQLE--NVKPDSFTL 532
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V ++ + + +HGY + + DV++ TAL+DMY+KCG + A +F+
Sbjct: 533 VSIIPALADISDPLQARWIHGYSIRLHL--DQDVYVLTALIDMYAKCGRVSIARSLFNSA 590
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
R+++V+TW AM G HG G A+ L + M+ G PN TF S+ +AC HAGLV+EG
Sbjct: 591 RDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQ 650
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
F +MK +G+EP ++HY +VDLLGRAG L EA++FI +P++P ++ ++L AC +
Sbjct: 651 EYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKL 710
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
H +V L E+ + + +L+PE V L+NIYA+A W DV VR M+ K
Sbjct: 711 HKNVELAEESAQRIFELEPEEGVY--------HVLLANIYANASLWKDVARVRTAMEKKG 762
Query: 461 VETEPGSSILQ 471
++ PG SI+Q
Sbjct: 763 LQKTPGWSIVQ 773
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 21/349 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ L CA L+T GR +H + RG L AT L + YA + ++VF
Sbjct: 227 TFTSLLKLCAARADLAT---GRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVF 283
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D+MP R WNA++ GY A++ A V + + G +P T+V VL
Sbjct: 284 DRMPARDRVAWNALVAGY------ARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPAC 337
Query: 228 SQLGLLEFGAC--VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ L GAC VH + + + + V + TA++D+Y KCG +D+A +F M+++N
Sbjct: 338 ADAQAL--GACREVHAFAVRGGF--DEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNS 393
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++W AM G A +G EA+ L M GV V+ + AC G ++EG + +
Sbjct: 394 VSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHE- 452
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
+ + G+E ++ + ++ + + + A + K + W +++ C +G
Sbjct: 453 LLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTR-VSWNAMILGCTQNGS-- 509
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE-RWPDVESVR 453
E ++ ++Q E D AL++I + RW S+R
Sbjct: 510 -SEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIR 557
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 229/427 (53%), Gaps = 20/427 (4%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF 104
L+ +Y K + ++ H + D L + C ++ +F + +GL
Sbjct: 246 LLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFL 305
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ AL CA SL+ L +G Q+H + K G ++ + +L+ YA I+
Sbjct: 306 SATSVASALRVCA---SLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEAT 362
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
FD++ ++ + ++ A+++G C Q+ KA++ A ++F+ M ++P TMV ++
Sbjct: 363 MFFDEIAVKDTISYGALLSG-CVQNGKAEE----AFLVFKKM--QACNMEPDIATMVSLI 415
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S L L+ G C HG + E I +L+DMY+KCG +D + +F +M ++
Sbjct: 416 PACSHLAALQHGKCSHGSVIIRGLALETS--ICNSLIDMYAKCGKIDLSRQVFDKMPARD 473
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W M G IHG G EA L M++ G P+ VTF L AAC H+GLV EG H FD
Sbjct: 474 VVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFD 533
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M K+G+ P ++HY C+VDLL R G L+EAY FI +P+K D +W +LL AC +H ++
Sbjct: 534 TMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNI 593
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG++V +I+ +L PE T +FV LSNI+++A R+ + VR KVK +
Sbjct: 594 DLGKQVSRIIQKLGPEGT--------GNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKS 645
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 646 PGYSWIE 652
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 160/348 (45%), Gaps = 26/348 (7%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTF----DDFTYVFALGSC 116
VF P+ +N LIR P ++ ++ + +L F + +T+ F L +C
Sbjct: 56 VFDRIPAPDARAYNALIRAYSWLGPFHAAIDLY-----RSMLRFRVAPNKYTFPFVLKAC 110
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
+ +L L GR IH H G ++ V+T LI Y + VF +MPMR
Sbjct: 111 S---ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVV 167
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WNAM+ GY + +A+ DM D G++P +T+V +L + +Q G L G
Sbjct: 168 AWNAMLAGYANHG-----MYHHAIAHLLDM-QDHGGLRPNASTLVSLLPLLAQHGALFQG 221
Query: 237 ACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+H Y + E V IGTAL+DMY+KC L A +F M +N +TW+A+ G
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281
Query: 296 AIHGKGNEAIRLLDSMRDCGV-KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+ + EA L M G+ +A + S C + G L + +K G+
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH-ALIAKSGIHA 340
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + ++ + +AG + EA F I +K D I + +LLS C +G
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGALLSGCVQNG 387
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 15/248 (6%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSG 212
+ S ++ ++VFD++P + +NA+I Y F+A + L+R ML
Sbjct: 44 HISRGQLALARQVFDRIPAPDARAYNALIRAYSWLG------PFHAAIDLYRSMLR--FR 95
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V P T VL S L L G +H + D+F+ TAL+D+Y +C
Sbjct: 96 VAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGL--HTDLFVSTALIDLYIRCARFGP 153
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI-RLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F++M ++V+ W AM G A HG + AI LLD G++PNA T SL
Sbjct: 154 ARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLA 213
Query: 332 HAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
G + +G +H + E + + ++D+ + L A G+P++ D +
Sbjct: 214 QHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND-V 272
Query: 390 LWRSLLSA 397
W +L+
Sbjct: 273 TWSALIGG 280
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/507 (30%), Positives = 253/507 (49%), Gaps = 84/507 (16%)
Query: 31 LITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCT----P 85
++ N L S + +LI Y + P + K H +F P++ + N ++R +
Sbjct: 1 MVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMK 58
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P+ +V ++ +G+ + D +T+ F L +C++ S G H V + GF+ N
Sbjct: 59 PEKTVSLYTEMEKRGV-SPDRYTFTFVLKACSKLEWRSN---GFAFHGKVVRHGFVLNEY 114
Query: 146 VATTLIHF-------------------------------YASNKDISSGKKVFDQMPMRS 174
V LI F YA I ++FD+MP +
Sbjct: 115 VKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKD 174
Query: 175 SATWNAMING--YCSQSKKAKD----------------------CAF--NALVLFRDMLV 208
WN MI G C + A++ C + AL +F++M
Sbjct: 175 QVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEM-- 232
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT----ALVDMY 264
+G P T++ +LS + LG LE G +H Y+ +T + + +++GT AL+DMY
Sbjct: 233 RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS-IYVGTPIWNALIDMY 291
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
+KCG +D A+ +F ++++++ TW + G+A+H +I + + M+ V PN VTF
Sbjct: 292 AKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFI 350
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ AC H+G V+EG F M+ + +EP+IKHY C+VD+LGRAG LEEA+ F+ + I
Sbjct: 351 GVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKI 410
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+P+AI+WR+LL AC ++G+V LG+ + LL ++ + S D+V LSNIYAS
Sbjct: 411 EPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--------ESGDYVLLSNIYASTG 462
Query: 445 RWPDVESVRKQMKVKRVETEPGSSILQ 471
+W V+ VRK RV+ G S+++
Sbjct: 463 QWDGVQKVRKMFDDTRVKKPTGVSLIE 489
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 215/379 (56%), Gaps = 23/379 (6%)
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
V G + + T L +C L LGR + G + LV + L+ Y
Sbjct: 221 VKDGAVVPNAVTLAVVLAACR---DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEK 277
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+I+ ++VFD + + WNAMI GY + A+ LF +M +GV P
Sbjct: 278 CGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNE-----AISLFHNM--KKAGVCPD 330
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYME-KTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T+ VLS S +G LE G+ + GY + Y N+V++GTALVDMY+KCG LD A+
Sbjct: 331 KITLAGVLSACSAVGALELGSELDGYASCRGLY---NNVYVGTALVDMYAKCGDLDKAIE 387
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAG 334
+F +MR KNV +W A+ G+A +G+G+EAI+ + MR + G+KP+ +TF + +AC HAG
Sbjct: 388 VFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAG 447
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV++G F+++ S++ + P I+HYSC+VD L R+GHLEE ++FI IP K DA++ +L
Sbjct: 448 LVKDGKRWFNSLTSEFQIIPKIEHYSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGAL 507
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L+AC +V +GE+V ++QL+P S ++V S IYAS+ R D +R
Sbjct: 508 LAACRKCKNVEIGERVINRIIQLEP--------TNSWNYVVSSKIYASSGRLDDSAKMRG 559
Query: 455 QMKVKRVETEPGSSILQTT 473
M+ + V PG S ++ +
Sbjct: 560 LMRERGVNKTPGCSWVEIS 578
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 129/262 (49%), Gaps = 16/262 (6%)
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV--LFRDM 206
+LI Y+ D + +KVF+ +P R +WNAM+ Y N V + RDM
Sbjct: 168 SLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGR-------VGMNGEVGRMLRDM 220
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
+ D V P T+ VL+ G L G V + K+ M E D +G+ALV MY K
Sbjct: 221 VKD-GAVVPNAVTLAVVLAACRDEGDLVLGRWVEEW-SKSAGM-ETDSLVGSALVGMYEK 277
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG + A +F + +K+V+ W AM TG A +G NEAI L +M+ GV P+ +T +
Sbjct: 278 CGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGV 337
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+AC G +E G L D S G+ ++ + +VD+ + G L++A + K
Sbjct: 338 LSACSAVGALELGSEL-DGYASCRGLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCK- 395
Query: 387 DAILWRSLLS--ACNVHGDVAL 406
+ W +L+ A N GD A+
Sbjct: 396 NVASWNALICGLAFNGQGDEAI 417
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 256/528 (48%), Gaps = 89/528 (16%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
LKA TT S ++Q+HA++I L LI + T S + VF P+
Sbjct: 32 LKACTTTSTLEQVHARIIRKGLHQDHF---LISQFLTLCNSLSNFSYTTSVFNGVSSPST 88
Query: 75 FLFNTLIRCTPPQDSV-LVFAYWV--SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
L+NT I+ SV L + ++ + D FTY + +C++ C + G
Sbjct: 89 VLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE---GVAF 145
Query: 132 HVHVTKRGFMFNVLVATTLIHFY-------------------------------ASNKDI 160
H + G +V V T+LI Y AS D+
Sbjct: 146 HGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDL 205
Query: 161 SSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAK----DCAFNALVLFRDMLVDVS--- 211
+K+FD+MP +++ +WNA+I+GY C + A+ + +V F M+ +
Sbjct: 206 VEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSG 265
Query: 212 -------------------------------GVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
VKP + MV ++S SQ+G LE V
Sbjct: 266 DMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVD 325
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y+ K+ + + + AL+DM +KCG +D A +F M +++++++ +M G++IHG
Sbjct: 326 DYVRKS-SIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGC 384
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G +A+ L M + G+ P+ V FT + AC AGLV+EG + F++MK+ + + P HY+
Sbjct: 385 GPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYA 444
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGRAG L+EAY + +P++P A W +LL AC +H D+ LGE V L +L+P+
Sbjct: 445 CMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFELEPQ 504
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+ ++V LSNIYA+AE+W DV +R +M+ + + PG S
Sbjct: 505 --------NAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 544
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 46/335 (13%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLG-------RQIHVHVTKRGFMFNVLVATTLIHFY 154
LTF D Y+ L S S+STL Q+H + ++G + + + +
Sbjct: 10 LTFPD--YLPTLRSFDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLC 67
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
S + S VF+ + S+ WN I GY + + LF M S
Sbjct: 68 NSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSL-----TVSLFIRM--KRSDAV 120
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P T ++ S++ ++ G HG + DVF+ T+L+D+Y KCG + A
Sbjct: 121 PDKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGV--GGDVFVMTSLIDLYGKCGEILCAR 178
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M E+NV++WTAM G A EA +L D M + NAV++ ++ + G
Sbjct: 179 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE----KNAVSWNAIISGYVKCG 234
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP----------- 383
+ +FD M + ++ ++ ++D ++G + A P
Sbjct: 235 DLRSARKMFDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALI 289
Query: 384 --------IKPDAILWRSLLSACNVHGDVALGEKV 410
+KPD + SL+SAC+ G + L + V
Sbjct: 290 FRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWV 324
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 218/396 (55%), Gaps = 20/396 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + C+ + L+F +++GL + AL +CA SL L +G Q+H +
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA---SLDHLRMGEQLHALL 366
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ +L+ YA I +FD+M ++ + +++A+++GY Q+ +A++
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV-QNGRAEE- 424
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A ++F+ M V+P TMV ++ S L L+ G C HG + E
Sbjct: 425 ---AFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS-- 477
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
I AL+DMY+KCG +D + +F+ M +++++W M G IHG G EA L M + G
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 537
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
P+ VTF L +AC H+GLV EG H F M+ +G+ P ++HY C+VDLL R G L+EA
Sbjct: 538 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEA 597
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +P++ D +W +LL AC V+ ++ LG+KV +++ +L PE T +FV
Sbjct: 598 YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT--------GNFVL 649
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIY++A R+ + VR KV+ + PG S ++
Sbjct: 650 LSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 165/391 (42%), Gaps = 67/391 (17%)
Query: 62 VHFVFTHFDPPNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
H +F P++ +N LIR T D + ++ + + + +++T+ FAL +
Sbjct: 76 AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRML-RHRVAPNNYTFPFALKA 134
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C+ +L+ GR IH H G ++ V+T L+ Y + +F MP R
Sbjct: 135 CS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WNAM+ GY +A+ M + + ++P +T+V +L + +Q G L
Sbjct: 192 VAWNAMLAGYAHHGMY-----HHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246
Query: 236 GACVHGY-MEKTFYMPEND-------VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
G VH Y + + N V +GTAL+DMY+KCG L A +F M +N +T
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306
Query: 288 WTAMATGMAIHGKGNEAIRLLDSM-----------------RDC---------------- 314
W+A+ G + + +A L +M R C
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366
Query: 315 ---GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV + SL + AGL+++ + LFD M K V YS +V + G
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNGR 421
Query: 372 LEEA---YNFIMGIPIKPDAILWRSLLSACN 399
EEA + + ++PDA SL+ AC+
Sbjct: 422 AEEAFLVFKKMQACNVEPDAATMVSLIPACS 452
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 19/255 (7%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
+ ++ +S +FDQ+P T+N +I Y S S A A + L L+R ML V
Sbjct: 67 HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTA---AADGLHLYRRMLRHR--V 121
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
P + T L S L G +H + + D+F+ TAL+DMY KC CL +A
Sbjct: 122 APNNYTFPFALKACSALADHHCGRAIHRHAIHAGL--QADLFVSTALLDMYVKCACLPDA 179
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACC 331
IF+ M ++++ W AM G A HG + A+ L SM+ ++PNA T +L
Sbjct: 180 AHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 239
Query: 332 HAGLVEEG--LH-------LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
G + +G +H L N SK + + + ++D+ + G L A +
Sbjct: 240 QQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 299
Query: 383 PIKPDAILWRSLLSA 397
P + + + W +L+
Sbjct: 300 PAR-NEVTWSALIGG 313
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 231/452 (51%), Gaps = 30/452 (6%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+ IH + +S L + LI +Y + K VF P+L +N L+
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNK----VFEAMTNPDLVSWNALLSG 227
Query: 84 TPPQDSV----LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ +F + +G + FT++ L SC+ SL G+Q+H H+ K
Sbjct: 228 FYDSQTCGRGPRIFYQMLLEGFKP-NMFTFISVLRSCS---SLLDPEFGKQVHAHIIKNS 283
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ V T L+ YA + + FD++ R +W +I+GY D A A
Sbjct: 284 SDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQT-----DQAEKA 338
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ FR M + G+KP + T+ LS S + LE G +H K + D+F+G+A
Sbjct: 339 VKYFRQMQRE--GIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHF--GDIFVGSA 394
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVD+Y KCGC+++A IF + +++++W + +G + HG+G +A+ M G+ P+
Sbjct: 395 LVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPD 454
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
TF + +AC GLVEEG FD+M +G+ P I+HY+C+VD+LGRAG E FI
Sbjct: 455 EATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFI 514
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ + P +++W ++L AC +HG+V GEK K L +++P + ++ LSNI
Sbjct: 515 EEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMM--------DSSYILLSNI 566
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+AS RW DV ++R M + ++ EPG S ++
Sbjct: 567 FASKGRWDDVRNIRALMTSRGIKKEPGCSWVE 598
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 192/395 (48%), Gaps = 34/395 (8%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VFT P++ ++ +I + Q++ +F KG + FT + +L S A
Sbjct: 108 VFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARP-NQFT-LSSLVSTA--T 163
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
++ L G+ IH + K GF + LV+ LI Y ++ + G KVF+ M +WNA
Sbjct: 164 NMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNA 223
Query: 181 MING-YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+++G Y SQ+ C + ++ +L G KP T + VL S L EFG V
Sbjct: 224 LLSGFYDSQT-----CGRGPRIFYQMLL---EGFKPNMFTFISVLRSCSSLLDPEFGKQV 275
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H ++ K ++D F+GTALVDMY+K CL++A + F R+ +++ +WT + +G A
Sbjct: 276 HAHIIKN--SSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTD 333
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
+ +A++ M+ G+KPN T S + C H +E G L + K G I
Sbjct: 334 QAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLH-AVAVKAGHFGDIFVG 392
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--- 416
S +VDL G+ G +E A G+ I D + W +++S + HG + +++L
Sbjct: 393 SALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGI 451
Query: 417 LQPEVTFVDV--ACT--------SEDFVALSNIYA 441
+ E TF+ V AC+ + F ++S IY
Sbjct: 452 MPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYG 486
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 11/234 (4%)
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+++F MP ++ +WNA++NGY K L LF M K + T+ V
Sbjct: 5 ERLFFGMPEKNGVSWNALLNGYAQLGDGKK-----VLKLFCKM--KECETKFSKFTLSTV 57
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + G L G +H ++ E D F+G +LVDMYSKCG + +AL +F+++R
Sbjct: 58 LKGCANTGSLREGKVLHALALRS--GCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNP 115
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+ W+AM TG+ G G EA L MR G +PN T +SL + + G + G +
Sbjct: 116 DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIH 175
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ K+G E + ++ + ++ +E+ N + PD + W +LLS
Sbjct: 176 GCI-CKYGFESDNLVSNPLIMMYMKSRCVEDG-NKVFEAMTNPDLVSWNALLSG 227
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 134/328 (40%), Gaps = 39/328 (11%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
F FT L CA SL G+ +H + G + + +L+ Y+ +
Sbjct: 49 FSKFTLSTVLKGCANTGSLRE---GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDA 105
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
KVF ++ W+AMI G Q + A LF L+ G +P T+ +
Sbjct: 106 LKVFTKIRNPDVVAWSAMITGLDQQGHGQE-----AAELFH--LMRRKGARPNQFTLSSL 158
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S ++ +G L +G +HG + K Y E+D + L+ MY K C+++ +F M
Sbjct: 159 VSTATNMGDLRYGQSIHGCICK--YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNP 216
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++++W A+ +G R+ M G KPN TF S+ +C L
Sbjct: 217 DLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS---------SLL 267
Query: 344 DNMKSKWGVEPH---IKHYS--------CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
D ++G + H IK+ S +VD+ +A LE+A + D W
Sbjct: 268 D---PEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDA-GVAFDRLVNRDIFSWT 323
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPE 420
++S + EK K Q+Q E
Sbjct: 324 VIISG---YAQTDQAEKAVKYFRQMQRE 348
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 135/324 (41%), Gaps = 30/324 (9%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF 75
++ P KQ+HA +I N+ L+ +Y A + + F ++F
Sbjct: 265 SLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMY----AKARCLEDAGVAFDRLVNRDIF 320
Query: 76 LFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQ 130
+ +I + + +V F +G+ + + L SC CS ++TL GRQ
Sbjct: 321 SWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNE-----YTLASCLSGCSHMATLENGRQ 375
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H K G ++ V + L+ Y + + +F + R +WN +I+GY +
Sbjct: 376 LHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQ 435
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM- 249
K AL FR ML + G+ P + T + VLS S +GL+E G M K + +
Sbjct: 436 GEK-----ALEAFRMMLSE--GIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGIN 488
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGK---GNEAI 305
P + + +VD+ + G + + M L W + +HG G +A
Sbjct: 489 PSIEHY--ACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAA 546
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAA 329
+ L M + + + +++FA+
Sbjct: 547 KKLFEMEPM-MDSSYILLSNIFAS 569
>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
Length = 583
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 155/453 (34%), Positives = 234/453 (51%), Gaps = 29/453 (6%)
Query: 24 IKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQ HA+L+ + S PL +L L A+ + + P+ FLF +L R
Sbjct: 26 LKQAHARLVVSGHAHSLPLTTKLATLAVAAGAASYAG----LLAASHPSPDSFLFCSLTR 81
Query: 83 CTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ + L F + L F F + +CA LS L G +H H G
Sbjct: 82 AAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACA---DLSALRAGMGVHAHAVLLG 138
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F + V T L+ Y+ + +K+FD + RS WNAMI+GY + A A
Sbjct: 139 FGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGY-----EQNGLAGRA 193
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ ++R+M V+G P T V LS +Q G L+ G V + E +V +G A
Sbjct: 194 IEVYREM--RVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERM--EMNVVLGAA 249
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LV+MY++CG ++ A F ++E+NV+TWT+M G +HG G EA++L D MR G PN
Sbjct: 250 LVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPN 309
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF ++ +AC HAGLV +G F +MKS +G+ P +HY +VD+ GRAG L++A FI
Sbjct: 310 DVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFI 369
Query: 380 M-GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
IP +P +W ++L AC +H + +LG +V + L+ L+PE V LSN
Sbjct: 370 HDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPE--------NPSHRVLLSN 421
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
IYA + + VE VR M +R++ G S+++
Sbjct: 422 IYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIE 454
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 231/452 (51%), Gaps = 30/452 (6%)
Query: 25 KQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K+IH + S + L+ +Y A S K +F N+ +N++I
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMY----AKCGSLKTARLLFDGMLERNVVSWNSMIDA 311
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ P++++++F + +G+ D + + AL +CA L L GR IH +
Sbjct: 312 YVQNENPKEAMVIFQKMLDEGVKP-TDVSVMGALHACA---DLGDLERGRFIHKLSVELE 367
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
NV V +LI Y K++ + +F ++ R+ +WNAMI G+ + A
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGR-----PIEA 422
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L F M VKP T V V++ ++L + +HG + + + +VF+ TA
Sbjct: 423 LNYFSQM--QARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCL--DKNVFVTTA 478
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMY+KCG + A LIF M E++V TW AM G HG G A+ L + M+ ++PN
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPN 538
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF S+ +AC H+GLVE GL F MK + +EP + HY +VDLLGRAG L EA++FI
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFI 598
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
M +P+KP ++ ++L AC +H +V EKV + L +L PE V L+NI
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPE--------DGGYHVLLANI 650
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
Y +A W V VR M + + PG S+++
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVE 682
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 158/333 (47%), Gaps = 20/333 (6%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHF 69
A L L+ ++ ++ I + N L L+ +L+ L+C + ++ + VF
Sbjct: 40 AALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAAR----VFEPI 95
Query: 70 DPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
D L+ T+++ D L F + + + + + L C + L
Sbjct: 96 DKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCG---DEAELR 152
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
+G++IH + K GF ++ T L + YA + + +KVFD+MP R +WN ++ GY
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGY- 211
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
SQ+ A+ + L L+ +KP+ T+V VL S L L+ G +HGY +
Sbjct: 212 SQNGMAR------MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRA 265
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ ++ V I TALVDMY+KCG L A L+F M E+NV++W +M + EA+
Sbjct: 266 GF--DSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMV 323
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ M D GVKP V+ AC G +E G
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 11/275 (4%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S+L R I + K G L T L+ + + +VF+ + + + + M+
Sbjct: 48 SSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTML 107
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G+ S K F V RD V+P +L V L G +HG
Sbjct: 108 KGFAKVSDLDKALKF--FVRMRD-----DEVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ K+ + D+F T L +MY+KC + A +F RM E+++++W + G + +G
Sbjct: 161 LVKSGF--SLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
A+ +++ M + +KP+ +T S+ A L+ G + + G + + + +
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEI-HGYAMRAGFDSLVNIATAL 277
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
VD+ + G L+ A G+ ++ + + W S++ A
Sbjct: 278 VDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDA 311
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/316 (39%), Positives = 184/316 (58%), Gaps = 18/316 (5%)
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
S KVF+ MP + WN++ING+ K + AL L++ M GV+P TM
Sbjct: 58 ESAYKVFELMPEKDIVAWNSVINGFALNGKPNE-----ALTLYKRM--GSEGVEPDGFTM 110
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V +LS ++L L G H YM K ++ AL+D+Y+KCG + A IF M
Sbjct: 111 VSLLSACAELATLVLGRRAHVYMVKVGL--NKNLHANNALLDLYAKCGTISEARKIFDEM 168
Query: 281 R-EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
E+NV++WT++ G+A++G G EA+ M G+ P+ +TF + AC H G+V EG
Sbjct: 169 GIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEG 228
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F MK ++ + P I+HY C+VDLLGRAG L+EAY++I +P++P+A++WR+LL AC
Sbjct: 229 FEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACT 288
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+HG + LG LLQL+P+ S D+V LSN+YAS +RW DV VR+ M +
Sbjct: 289 IHGHLGLGAFARARLLQLEPK--------DSGDYVLLSNLYASEQRWSDVHEVRRTMLSE 340
Query: 460 RVETEPGSSILQTTTH 475
V PG S+++ H
Sbjct: 341 GVRKTPGYSLVELGNH 356
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
P +++ ++ S+G+ D FT V L +CA L+TL LGR+ HV++ K G N+
Sbjct: 88 PNEALTLYKRMGSEGVEP-DGFTMVSLLSACA---ELATLVLGRRAHVYMVKVGLNKNLH 143
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPM-RSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
L+ YA IS +K+FD+M + R+ +W ++I G + AL F+
Sbjct: 144 ANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKE-----ALEHFK 198
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMY 264
DM + G+ P++ T V VL S G++ G M++ + + G +VD+
Sbjct: 199 DM--EREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYG-CMVDLL 255
Query: 265 SKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHG 299
+ G L A M + N + W + IHG
Sbjct: 256 GRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHG 291
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP D ++ Y ++A +F M EK+++ W ++ G A++GK NEA+ L
Sbjct: 41 MPHKDTVTLDTMITAY-----FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLY 95
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M GV+P+ T SL +AC + G M K G+ ++ + ++DL +
Sbjct: 96 KRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYM-VKVGLNKNLHANNALLDLYAK 154
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVD 425
G + EA + I+ + + W SL+ A N G AL L P E+TFV
Sbjct: 155 CGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVG 214
Query: 426 V--ACT 429
V AC+
Sbjct: 215 VLYACS 220
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 215/377 (57%), Gaps = 23/377 (6%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ +D TYV LG CA+ + L LG QIH + K G +F+V V++TLI Y ++
Sbjct: 225 VIWDSVTYVSVLGLCAQ---IRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVL 281
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+ +K FD + R+ W A++ Y + L LF M ++ +P + T
Sbjct: 282 NARKQFDGLRDRNVVAWTAVLTAYLQNGHFEE-----TLNLFTKM--ELEDTRPNEFTFA 334
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+L+ + L L +G +HG + + + +N + +G AL++MYSK G +D++ +FS M
Sbjct: 335 VLLNACASLVALAYGDLLHGRIVMSGF--KNHLIVGNALINMYSKSGNIDSSYNVFSNMM 392
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
++V+TW AM G + HG G +A+ + M G PN VTF + +AC H LV+EG +
Sbjct: 393 NRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFY 452
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI-MGIPIKPDAILWRSLLSACNV 400
FD + K+ VEP ++HY+C+V LLGRAG L+EA NF+ +K D + WR+LL+AC++
Sbjct: 453 YFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHI 512
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
H + LG+++ + ++Q+ P DV + LSN++A A +W V +RK MK +
Sbjct: 513 HRNYNLGKQITETVIQMDPH----DVGT----YTLLSNMHAKARKWDGVVKIRKLMKERN 564
Query: 461 VETEPGSSIL--QTTTH 475
++ EPG+S L + TH
Sbjct: 565 IKKEPGASWLDIRNNTH 581
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 132/277 (47%), Gaps = 13/277 (4%)
Query: 124 TLWLGRQIHVHVTKRGFMF---NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L G+ IH + R ++ +LI+ Y+ +K+FD+M R+ +W+A
Sbjct: 38 SLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSA 97
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++ GY + + L LFR+ LV + P + VLS + G ++ G H
Sbjct: 98 LMMGYLHKGE-----VLEVLGLFRN-LVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCH 151
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+ K+ + ++ AL+ MYS+C +D+A+ I + +V ++ ++ + + G
Sbjct: 152 GYLLKSGLLLHQ--YVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGC 209
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EA ++L M D V ++VT+ S+ C ++ GL + + K G+ + S
Sbjct: 210 RGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQL-LKTGLVFDVFVSS 268
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++D G+ G + A G+ + + + W ++L+A
Sbjct: 269 TLIDTYGKCGEVLNARKQFDGLRDR-NVVAWTAVLTA 304
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 195/337 (57%), Gaps = 17/337 (5%)
Query: 139 GFMFNVLVA-TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G M LV+ +T+I YA ++ +++F+ MPMR+ +WNAMI GY K A
Sbjct: 218 GMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYA----- 272
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+A+ LFR M + G+ P D T+V VLS + LG L+ G +H ++ + E +F+G
Sbjct: 273 DAIELFRQMQHE-GGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRN--KIEVGLFLG 329
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
AL DMY+KCGC+ A +F M E++V++W+ + G+A++G NEA M + G++
Sbjct: 330 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 389
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN ++F L AC HAGLV++GL FD M +G+ P I+HY C+VDLL RAG L++A +
Sbjct: 390 PNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAES 449
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
I +P++P+ I+W +LL C ++ D GE+V +L+L + S V L+
Sbjct: 450 LINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELD--------SNHSGSLVYLA 501
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
N+YAS R D S R +M+ + PG S ++
Sbjct: 502 NVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINN 538
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F + LV + P + T VL + L + G VH ++ K Y E+++F+ +LVD
Sbjct: 113 FNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTK--YGCESNLFVRNSLVD 170
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
+Y K GC A +F M ++V++W + +G G ++A + D M ++ N V+
Sbjct: 171 LYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGM----MEKNLVS 226
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSK----WGV----EPHIKHYSCIVDLLGRAGHLEE 374
++++ + G +EE LF+NM + W + Y+ ++L + H
Sbjct: 227 WSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQH--- 283
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+ P+ + S+LSAC G + LG+ + + + + + EV
Sbjct: 284 ------EGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEV 324
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 18/343 (5%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+++H H T G + ++ V L+H Y+ ++ K+VFD M R+ TW MI G
Sbjct: 645 KEVHSHATDAG-LVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
C +A F ML + G+ P TT V +LS + G LE+ VH +
Sbjct: 704 G-----CGHDAFSHFLQMLRE--GIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGL 756
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ +D+ +G ALV MY+KCG +D+A +F M E++V +WT M G+A HG+G EA+
Sbjct: 757 V--SDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFF 814
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M+ G KPN ++ ++ AC HAGLV+EG F +M +G+EP ++HY+C+VDLLGR
Sbjct: 815 VKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGR 874
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG LEEA FI+ +PI+PD W +LL AC +G++ + E K L+L+P+
Sbjct: 875 AGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPK-------- 926
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ +V LSNIYA+ +W VR M+ K + EPG S ++
Sbjct: 927 SASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIE 969
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/439 (25%), Positives = 202/439 (46%), Gaps = 35/439 (7%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
KQ+H +I + ++ A +L+++Y C + + VF N++++ T+I
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQ------VFDKLLKKNIYIWTTMI 191
Query: 82 ----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+D++ V+ + + ++ TY+ L +C C ++ W G++IH H+ +
Sbjct: 192 GGYAEYGHAEDAMRVYDK-MRQECGQPNEITYLSILKACC--CPVNLKW-GKKIHAHIIQ 247
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF +V V T L++ Y I + +FD+M R+ +W MI G + +
Sbjct: 248 SGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQE---- 303
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A LF M + G P T V +L+ ++ G LE+ VH + D+ +G
Sbjct: 304 -AFHLFLQMQRE--GFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL--DLRVG 358
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
ALV MY+K G +D+A ++F M E+++ +WT M G+A HG+G EA L M+ G
Sbjct: 359 NALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL 418
Query: 318 PNAVTFTSLFAACCHAGLVE-EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
PN T+ S+ A A E + + + G ++ + ++ + + G +++A
Sbjct: 419 PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDAR 478
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
G+ + D I W +++ +G G + + LQ+Q E D S +++L
Sbjct: 479 LVFDGMCDR-DVISWNAMMGGLAQNG---CGHEAFTVFLQMQQEGLVPD----STTYLSL 530
Query: 437 SNIYASAERWPDVESVRKQ 455
N + S + V V K
Sbjct: 531 LNTHGSTDALEWVNEVHKH 549
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 168/333 (50%), Gaps = 18/333 (5%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
+D+V + V +G+ D F+YV L C + + L +Q+HV + K G N+
Sbjct: 99 AKDAVAMLKIRVQQGI-AIDSFSYVNILQRCLK---QEDILLAKQVHVCIIKSGMEQNLY 154
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
VA L+ Y + ++VFD++ ++ W MI GY A +A+ ++
Sbjct: 155 VANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGH-----AEDAMRVYDK 209
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M + +P + T + +L L++G +H ++ ++ + ++DV + TALV+MY
Sbjct: 210 MRQECG--QPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGF--QSDVRVETALVNMYV 265
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG +++A LIF +M E+NV++WT M G+A +G+G EA L M+ G PN+ T+ S
Sbjct: 266 KCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVS 325
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ A AG +E + + + G+ ++ + +V + ++G +++A G+ +
Sbjct: 326 ILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-E 383
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
D W ++ HG G++ + LQ+Q
Sbjct: 384 RDIFSWTVMIGGLAQHGR---GQEAFSLFLQMQ 413
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 182/421 (43%), Gaps = 62/421 (14%)
Query: 24 IKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
+K++H+ + L + L+ +Y K S ++V F ++F + +I
Sbjct: 339 VKEVHSHAVNAGLALDLRVGNALVHMY-AKSGSIDDARVV---FDGMTERDIFSWTVMIG 394
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ Q++ +F G L + T ++ + + S S L + +H H +
Sbjct: 395 GLAQHGRGQEAFSLFLQMQRNGCLP--NLTTYLSILNASAIASTSALEWVKVVHKHAEEA 452
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF+ ++ + LIH YA I + VFD M R +WNAM+ G C
Sbjct: 453 GFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNG-----CGHE 507
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A +F M + G+ P TT + +L+ LE+ VH + +T + +D +G+
Sbjct: 508 AFTVFLQMQQE--GLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLI--SDFRVGS 563
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
A + MY +CG +D+A L+F ++ ++V TW AM G A G EA+ L M+ G P
Sbjct: 564 AFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIP 623
Query: 319 NAVTFTSLFAA----------------CCHAGLVE------------------EGLHLFD 344
+A TF ++ +A AGLV+ +FD
Sbjct: 624 DATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFD 683
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAILWRSLLSACNVH 401
+M VE ++ ++ ++ L + G +A++ + + I PDA + S+LSAC
Sbjct: 684 DM-----VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACAST 738
Query: 402 G 402
G
Sbjct: 739 G 739
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 225/416 (54%), Gaps = 25/416 (6%)
Query: 60 KIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+ VF N +N +I + ++++ +F V +G+ D + + AL +
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV-DVTDVSVLAALQA 271
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C L G ++H + + G NV V LI Y+ K + VFD++ R+
Sbjct: 272 CGELGCLDE---GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNAMI G C+Q+ C+ +A+ LF M ++ VKP T+V V+ + +
Sbjct: 329 VSWNAMILG-CAQNG----CSEDAVRLFTRMQLE--NVKPDSFTLVSVIPALADISDPLQ 381
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+HGY + + DV++ TAL+DMY+KCG ++ A ++F+ RE++V+TW AM G
Sbjct: 382 ARWIHGYSIRLHL--DQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY 439
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
HG G A+ L + M+ G+ PN TF S+ +AC HAGLV+EG F +MK +G+EP
Sbjct: 440 GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPG 499
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
++HY +VDLLGRAG L+EA+ FI +P+ P ++ ++L AC +H +V L E+ + +
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIF 559
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L P+ V L+NIYA+A W DV VR M+ ++ PG SI+Q
Sbjct: 560 ELGPQEGVY--------HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQ 607
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 141/299 (47%), Gaps = 21/299 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ L CA L+T GR +H + RG L AT L + YA + + ++VF
Sbjct: 61 TFTSLLKLCAARGDLAT---GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVF 117
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLV---DVSGVKPTDTTMVCV 223
D+MP+R WNA++ GY A N L + +M+V + G +P T+V V
Sbjct: 118 DRMPVRDRVAWNALVAGY----------ARNGLARMAMEMVVRMQEEEGERPDSITLVSV 167
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + L H + ++ E V + TA++D Y KCG + A ++F M K
Sbjct: 168 LPACANARALAACREAHAFAIRSGL--EELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N ++W AM G A +G EA+ L + M + GV V+ + AC G ++EG+ +
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVH 285
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ + + G++ ++ + ++ + + ++ A + + + + W +++ C +G
Sbjct: 286 E-LLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ-VSWNAMILGCAQNG 342
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V L +CA+ S+ LGRQ+H + GF N+ + LI Y+ + +
Sbjct: 197 DEGTMVTVLSACAQSRSVE---LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETAC 253
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+ + + +WN +I GY + + AL+LF++ML SG P D T+V +L
Sbjct: 254 GLFEGLSCKDVVSWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGESPNDVTIVSIL 306
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ M K+
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 366
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ N L MR G++P+ +TF L +AC H+G ++ G H+F
Sbjct: 367 LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFK 426
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG +G +EA I +P++PD ++W SLL AC HG++
Sbjct: 427 SMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNL 486
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E + L++++PE +V LSNIYA+A W +V VR + K ++
Sbjct: 487 ELAESFARNLMKVEPE--------NPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKV 538
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 539 PGCSSIEIDS 548
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 194/423 (45%), Gaps = 85/423 (20%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF PN ++NT++R + P ++ ++ +S GLL + +T+ F L SCA+
Sbjct: 22 VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLP-NSYTFPFLLKSCAKSK 80
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN----------------------- 157
+ G+QIH HV K G+ ++ V T+LI YA N
Sbjct: 81 AFEE---GQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137
Query: 158 --------KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
+I S +++FD++P++ +WNAMI+GY + AL LF++M+
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKE-----ALELFKEMM-- 190
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
+ V+P + TMV VLS +Q +E G VH +++ + +++ I AL+D+YSKCG
Sbjct: 191 KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGF--GSNLKIVNALIDLYSKCGQ 248
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ A +F + K+V++W + G EA+ L M G PN VT S+ A
Sbjct: 249 VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPA 308
Query: 330 CCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN---------- 377
C H G ++ G +H++ + K K V + ++D+ + G +E A+
Sbjct: 309 CAHLGAIDIGRWIHVYIDKKLK-DVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSL 367
Query: 378 -----FIMGIP-------------------IKPDAILWRSLLSACNVHGDVALGEKVGKI 413
I G I+PD I + LLSAC+ G + LG + K
Sbjct: 368 SSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKS 427
Query: 414 LLQ 416
+ Q
Sbjct: 428 MTQ 430
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 254/481 (52%), Gaps = 39/481 (8%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
+S R LLK T H+KQI AQ+I + L+S A+ + + QS +
Sbjct: 5 MSCLAERVVKLLK-SFCRTQIHVKQIQAQIIIHNLQSHTTIAEHL------ITASQSHNL 57
Query: 62 VHFV---FTHFDP-PNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
+++V FTH P P++F+FN+LIR P + ++++ +L ++FT+ F
Sbjct: 58 LNYVSPLFTHLIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHMHKNSILP-NNFTFPFLF 116
Query: 114 GSCARFCSLSTLWLGRQ-IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
S S S ++ Q ++ HV K G++ ++ V +L+ YAS + +++FD+MP
Sbjct: 117 KSL----SDSHDFVQSQCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEMPQ 172
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R +W MI GY + K +AL++F M GV P TMV LS +
Sbjct: 173 RDVVSWTVMIMGYRNGGKYN-----DALLVFEQM--QYGGVVPNRVTMVNALSACASSCA 225
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
+E G + + + + E DV +GTAL+DMY KCG ++ L +F M+EKNV T +
Sbjct: 226 IEMGVWIDDMVRRNGW--ELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVI 283
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWG 351
G+A+ EA+ + M GV+ + VT ++ +AC H+GLVE+G +F + K+G
Sbjct: 284 KGLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKGRFIFSMLVDGKYG 343
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
P++KHY+C+VDLL RAG L+EA++ I +P +P A +W SLL D+ E
Sbjct: 344 FLPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWGSLLLGSKSRDDLEFSEFAA 403
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L++L+P T +V LSN+YA A RW DVE +R MK + + + G S ++
Sbjct: 404 TKLVELEPYNTAY--------YVQLSNLYAEAGRWSDVERIRGMMKERGLTKDLGCSSVE 455
Query: 472 T 472
Sbjct: 456 V 456
>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
Length = 470
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 236/445 (53%), Gaps = 23/445 (5%)
Query: 25 KQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+Q HA+ + L L L+ +YC + VF P++ +N L+
Sbjct: 26 EQAHARAVVGGWLPDATLETDLVLMYCRCG----ERRRARRVFDGMRAPSMHAYNVLLAA 81
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN 143
+PP+D++ VF+ ++ GL D ++ + +C+ L LG IH + G M N
Sbjct: 82 SPPRDAMEVFSRLLASGLRP-DGYSVPAVVRACS---ELPDAVLGGVIHGFAVRLGLMGN 137
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
V+VA L+ YA + +VFD+M R + WN M+ GY + A +F
Sbjct: 138 VVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARAGR-----AVETFEIF 192
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
V+ + + VL++ ++ G L G +HG M + ++D+ +G AL++M
Sbjct: 193 SRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIHGRMVRCLAF-DSDIAVGNALINM 251
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y+KCG ++ + +FS M++++V++W+ M +IHGKG +A+++ M GVKPN +TF
Sbjct: 252 YAKCGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITF 311
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
TS+ ++C H+GLV EG +F++M GV P +HY+C+VDLLGRAG +EEA I +P
Sbjct: 312 TSVLSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMP 371
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
++P A +W +LLSAC +H +V +GE L +L+ ++ ++V L IY +
Sbjct: 372 MEPCASVWGALLSACAMHNNVDVGEIAAFRLFELEEG--------SASNYVTLCGIYDAV 423
Query: 444 ERWPDVESVRKQMKVKRVETEPGSS 468
+ V +R +M+ + PG S
Sbjct: 424 GQSDGVAGLRSRMRELGMVKTPGCS 448
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 142/328 (43%), Gaps = 28/328 (8%)
Query: 118 RFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
R C+++ + G Q H G++ + + T L+ Y + ++VFD M S
Sbjct: 14 RRCAVAGAVRPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRAPSMH 73
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+N ++ A +A+ +F +L SG++P ++ V+ S+L G
Sbjct: 74 AYNVLL---------AASPPRDAMEVFSRLL--ASGLRPDGYSVPAVVRACSELPDAVLG 122
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+HG+ + M +V + AL+DMY+K G LD+A+ +F M E++ + W M G A
Sbjct: 123 GVIHGFAVRLGLM--GNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYA 180
Query: 297 IHGKGNEAIRLLDSMRDCGVK--PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
G+ E + + V S+ C G + +G + M +
Sbjct: 181 RAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIHGRMVRCLAFDS 240
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
I + ++++ + G + + G+ + D + W +++ + ++HG GE+ K+
Sbjct: 241 DIAVGNALINMYAKCGRVNVSQAVFSGMQQR-DVVSWSTMIHSYSIHGK---GEQALKVY 296
Query: 415 LQLQPE------VTFVDV--ACTSEDFV 434
+++ E +TF V +C+ V
Sbjct: 297 MEMLSEGVKPNWITFTSVLSSCSHSGLV 324
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 193/328 (58%), Gaps = 19/328 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ LI Y I K VF +MP R + +WN+MI GY + KD A AL L
Sbjct: 321 NVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYV----QIKDYA-RALAL 375
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M +++ V+ TD T++ VL ++ G LE G +H +++ Y E ++ ALVD
Sbjct: 376 FREM--EIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEG--YLSNALVD 431
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNA 320
MY+KCG L+ A +FS ++ K++ W AM +A+HG EA+RL +M G +PN
Sbjct: 432 MYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNR 491
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF + AC H GLV+EG F+ M +++ + P IKHY C+VDLL R G L+EA++ I
Sbjct: 492 VTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIK 551
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P + +++LWR+LL AC VH V L E+ + L +++P D+V LSNIY
Sbjct: 552 TMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEP--------LRDGDYVLLSNIY 603
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSS 468
A A+RW DVE VR +M V +PGSS
Sbjct: 604 AEAQRWNDVERVRSEMIGSGVPKKPGSS 631
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/408 (21%), Positives = 167/408 (40%), Gaps = 72/408 (17%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI-VHFVFTHFD 70
L KL+ +++ ++Q + + L + P I + + SP + + +F
Sbjct: 116 LSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLS--LSPLGSLVYAQAIFEDTA 173
Query: 71 PPNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR--FCS--- 121
N F+ NT+IR P ++ ++ + K + + D FTY F L +CAR +C+
Sbjct: 174 MDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKS-DHFTYPFGLKACARVLWCNEGD 232
Query: 122 -----LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
L G +IH + + G + + +L++ Y+ + + VFD+M ++
Sbjct: 233 IKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTIT 292
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
+WN MI+ Y D + D S S +G
Sbjct: 293 SWNVMISAY-------------------DQINDFD-------------SADSLIG----- 315
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
MP +V L+ Y + G +++A ++F M E++ ++W +M G
Sbjct: 316 -----------SMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYV 364
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356
A+ L M V+ +T S+ AC G +E G + ++K + E I
Sbjct: 365 QIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQR---EYKI 421
Query: 357 KHY--SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ Y + +VD+ + GHL A+ + +K + W +++ + VHG
Sbjct: 422 EGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISC-WNAMIVSLAVHG 468
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 22/200 (11%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
D T + LG+CA +L +GR+IH+ + +R + ++ L+ YA ++ +
Sbjct: 388 DITLISVLGACAETGALE---IGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWE 444
Query: 166 VFDQMPMRSSATWNAMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
VF ++ M+ + WNAMI +GYC + AL LF M + V G +P T
Sbjct: 445 VFSELKMKHISCWNAMIVSLAVHGYCEE----------ALRLFSTMEMSVDGARPNRVTF 494
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ VL S GL++ G M + MP D+ +VD+ S+CG L A +
Sbjct: 495 IGVLIACSHKGLVDEGRTFFNRMVNEYKIMP--DIKHYGCMVDLLSRCGLLKEAHHMIKT 552
Query: 280 MR-EKNVLTWTAMATGMAIH 298
M E N + W + +H
Sbjct: 553 MPFEANSVLWRTLLGACRVH 572
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 22/316 (6%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK--DISSGKKVFDQMPMRS 174
++ LS++ Q +TK G + V + +I F + + + + +F+ M +
Sbjct: 117 SKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAMDN 176
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD----VSGVKPTDTTMVCVLS--VSS 228
N MI Y K + +D+ D G+K + C +
Sbjct: 177 PFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIKCT 236
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
QL + GA +H + + + D FI +LV +YS+CG LD A +F M EK + +W
Sbjct: 237 QLDIACKGAEIHCRLFRLGL--DQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSW 294
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
M + + A L+ SM N V++ L A G +E+ +F M
Sbjct: 295 NVMISAYDQINDFDSADSLIGSMPG----KNVVSWNMLIARYIRLGKIEDAKVVFQEMPE 350
Query: 349 KWGV--EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLLSACNVHGDVA 405
+ V I Y I D E M I ++ I S+L AC G +
Sbjct: 351 RDAVSWNSMIAGYVQIKDYARALALFRE-----MEIANVEATDITLISVLGACAETGALE 405
Query: 406 LGEKVGKILLQLQPEV 421
+G K+ L Q + ++
Sbjct: 406 IGRKIHLSLKQREYKI 421
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 219/397 (55%), Gaps = 53/397 (13%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-------- 156
++ V + +C R ++S G+Q H + + GF + T+IHFYA+
Sbjct: 315 NEVMIVDLISACGRTMAVSE---GQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAF 371
Query: 157 -----------------------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
N I +++FD+MP R +W++MI+GY SQ+++
Sbjct: 372 LQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGY-SQNEQPD 430
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF +M+ GV+P + TMV V S + LG L G H Y+ +P ND
Sbjct: 431 L----ALQLFHEMVA--GGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSN-SIPLND 483
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ AL+DMY+KCG + AL +F ++++ +V W A+ G+A+HG N +++L +
Sbjct: 484 -NLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQL 542
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ +KPN++TF + +ACCHAGLV+ G F MK+ + +EP+IKHY C++DLLGRAG
Sbjct: 543 QRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGR 602
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L+EA I +P+K D ++W +LL+AC HG+V +GE+ + L +L D++
Sbjct: 603 LKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKL-------DIS-HGA 654
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
V LSNIYA A RW D VR+ M+ +R++ PG S
Sbjct: 655 GRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/411 (24%), Positives = 160/411 (38%), Gaps = 98/411 (23%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
+ T V AL SC+ +LS G+QIH V K G + N+ V +LI FY + IS+ +
Sbjct: 52 ELTLVSALKSCSSLLALSQ---GQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARS 108
Query: 166 VFDQMPMRSSATWNAMINGYCSQSK--------------------------KAKDCAFNA 199
+FD + + N M+ GY +C A
Sbjct: 109 LFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEA 168
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ +F+DM +GV P + T+ V+S S +G + +H K N + T
Sbjct: 169 IGVFKDM--RFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALN--IVATN 224
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG-------------------- 299
LV MY C L NA ++F + E+NV+TW M G + G
Sbjct: 225 LVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSW 284
Query: 300 -----------KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----------HAGLVE 337
+ EA+R+ SM GV PN V L +AC H +V
Sbjct: 285 GTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVR 344
Query: 338 EGLHLFDNMKS-------------------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
G +D +++ + G + H+ ++ ++ R G +E+A
Sbjct: 345 TGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQL 404
Query: 379 IMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVDV 426
+P + D W S++S + N D+AL + +QP E+T V V
Sbjct: 405 FDEMP-ERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSV 454
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 158/386 (40%), Gaps = 95/386 (24%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS- 187
R +H K G +VAT L+H Y + + + +FD++P R+ TWN M+NGY
Sbjct: 204 RMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKS 263
Query: 188 ----------QSKKAKDCAF---------------NALVLFRDMLVDVSGVKPTDTTMVC 222
+ AKD AL ++R ML +GV P + +V
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLR--TGVGPNEVMIVD 321
Query: 223 VLSVSSQLGLLEFGACVHGYMEKT--------------FYMPENDVFIG----------- 257
++S + + G HG + +T FY ++ +
Sbjct: 322 LISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDH 381
Query: 258 ----TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
AL+ + + G ++ A +F M E++V +W++M +G + + + + A++L M
Sbjct: 382 VSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVA 441
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEG-----------LHLFDNMKSK------------- 349
GV+PN +T S+F+A G + EG + L DN+ +
Sbjct: 442 GGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITI 501
Query: 350 -----WGVEPHIKHYS------CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ ++ + S C + + G A + ++ + + IKP++I + +LSAC
Sbjct: 502 ALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSAC 561
Query: 399 NVHGDVALGEKV---GKILLQLQPEV 421
G V GEK K L ++P +
Sbjct: 562 CHAGLVDTGEKYFKGMKNLYNIEPNI 587
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/416 (33%), Positives = 225/416 (54%), Gaps = 25/416 (6%)
Query: 60 KIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+ VF N +N +I + ++++ +F V +G+ D + + AL +
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV-DVTDVSVLAALQA 271
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C L G ++H + + G NV V LI Y+ K + VFD++ R+
Sbjct: 272 CGELGCLDE---GMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNAMI G C+Q+ C+ +A+ LF M ++ VKP T+V V+ + +
Sbjct: 329 VSWNAMILG-CAQNG----CSEDAVRLFTRMQLE--NVKPDSFTLVSVIPALADISDPLQ 381
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
+HGY + + DV++ TAL+DMY+KCG ++ A ++F+ RE++V+TW AM G
Sbjct: 382 ARWIHGYSIRLHL--DQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGY 439
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
HG G A+ L + M+ G+ PN TF S+ +AC HAGLV+EG F +MK +G+EP
Sbjct: 440 GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPG 499
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
++HY +VDLLGRAG L+EA+ FI +P+ P ++ ++L AC +H +V L E+ + +
Sbjct: 500 MEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIF 559
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L P+ V L+NIYA+A W DV VR M+ ++ PG SI+Q
Sbjct: 560 ELGPQEGVY--------HVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQ 607
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 25/351 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ L CA L+T GR +H + RG L AT L + YA + + ++VF
Sbjct: 61 TFTSLLKLCAARGDLAT---GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVF 117
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLV---DVSGVKPTDTTMVCV 223
D+MP+R WNA++ GY A N L + +M+V + G +P T+V V
Sbjct: 118 DRMPVRDRVAWNALVAGY----------ARNGLARMAMEMVVRMQEEEGERPDSITLVSV 167
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + L H + ++ E V + TA++D Y KCG + A ++F M K
Sbjct: 168 LPACANARALAACREAHAFAIRSGL--EELVNVATAILDAYCKCGDIRAARVVFDWMPTK 225
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N ++W AM G A +G EA+ L + M + GV V+ + AC G ++EG+ +
Sbjct: 226 NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVH 285
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ + + G++ ++ + ++ + + ++ A + + + + W +++ C +G
Sbjct: 286 E-LLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ-VSWNAMILGCAQNG- 342
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE-RWPDVESVR 453
E ++ ++Q E D AL++I + RW S+R
Sbjct: 343 --CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR 391
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 216/365 (59%), Gaps = 21/365 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+V LG+C + L L LG+ IH V+K ++V+ TL+ Y + ++ K++F
Sbjct: 284 TFVSILGACGK---LGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLF 340
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D++P + +W +MI+G C +L LF +ML SG +P + VLS
Sbjct: 341 DEIPEKDIVSWTSMISGLVQYQ-----CPQESLDLFYEMLG--SGFEPDGVILTSVLSAC 393
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ LGLL++G VH Y++ + + DV IGT+L+DMY+KCGC++ A +F+ + KN+ T
Sbjct: 394 ASLGLLDYGRWVHEYIDHSRI--KWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRT 451
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W A G+AI+G G EA++ + + G +PN +TF ++F+ACCH+GLV+EG F M
Sbjct: 452 WNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMT 511
Query: 348 S-KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
S + + P ++HY C+VDLL RA +EEA I +P+ PD + +LLSA + +G+V L
Sbjct: 512 SPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVEL 571
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
++ K + + + + V +V LSN YA+ ++W +V SVR+ MK K + PG
Sbjct: 572 TPEMLKTVRNFECQESGV--------YVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPG 623
Query: 467 SSILQ 471
SS+++
Sbjct: 624 SSLIR 628
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 198/424 (46%), Gaps = 38/424 (8%)
Query: 25 KQIHAQLITNALKSPPLY----AQLIQLYCTKKASP-QSTKIVHFVFTHFDPPNLFLFNT 79
KQIHAQL+ + L L A + T P K + F+ F P NL + +
Sbjct: 101 KQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWSFSSF-PCNLII-SG 158
Query: 80 LIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P ++ ++ + V G + D +T L SCARF ++ + +QIH K
Sbjct: 159 YGAGNFPWAAIRIYRWVVGNGFVP-DVYTVPAVLKSCARFSGIAEV---KQIHTLAVKTD 214
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN- 198
++ V + +H Y+ D KVFD MP+R +W +I+GY K FN
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGY------MKAGLFND 268
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ LF M V P T V +L +LG L G +HG + K Y ++ +
Sbjct: 269 AVALFLRM-----DVAPNAATFVSILGACGKLGCLNLGKGIHGLVSK--YPHGKELVVSN 321
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
L+DMY KC + +A +F + EK++++WT+M +G+ + E++ L M G +P
Sbjct: 322 TLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEP 381
Query: 319 NAVTFTSLFAACCHAGLVEEG--LHLF-DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+ V TS+ +AC GL++ G +H + D+ + KW V HI + ++D+ + G +E A
Sbjct: 382 DGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDV--HIG--TSLIDMYAKCGCIEMA 437
Query: 376 YNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGEKVGKILLQLQP-EVTFVDV--ACTS 430
+P K + W + + A N HG AL + + +P E+TF+ V AC
Sbjct: 438 QQMFNLLPSK-NIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCH 496
Query: 431 EDFV 434
V
Sbjct: 497 SGLV 500
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 30/372 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ T + + +CA +L G+ +H V K G V +LI+ Y + +
Sbjct: 240 NEVTLLSVVSACAXMGALDE---GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAAS 296
Query: 165 KVFDQMPMRSSATWNAMI-----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
++F++MP+RS +WN+M+ NGY ++K D FN L+ +G+ P T
Sbjct: 297 QLFEEMPVRSLVSWNSMVVIHNHNGY---AEKGMDL-FN--------LMKRAGINPDQAT 344
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV +L + GL +H Y+ + + D+ I TAL+++Y+K G L+ + IF
Sbjct: 345 MVALLRACTDTGLGRQAESIHAYIHRCGF--NADIIIATALLNLYAKLGRLNASEDIFEE 402
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+++++ + WTAM G A+H G EAI+L D M GV+ + VTFT L +AC H+GLVEEG
Sbjct: 403 IKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEG 462
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F+ M + VEP + HYSC+VDLLGR+G LE+AY I +P++P + +W +LL AC
Sbjct: 463 KKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACR 522
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
V+G+V LG++V + LL L P +++ LSNIY++A W VR MK +
Sbjct: 523 VYGNVELGKEVAEQLLSLDPS--------DHRNYIMLSNIYSAAGLWRXASKVRXLMKER 574
Query: 460 RVETEPGSSILQ 471
R+ PG S ++
Sbjct: 575 RLTRNPGCSFIE 586
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 143/322 (44%), Gaps = 27/322 (8%)
Query: 108 TYVFALGSCAR--FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
+ VFA+ SC +CS IH V K + + L+ Y ++
Sbjct: 144 SLVFAISSCTSVSYCS--------AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQR 195
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+MP R +WN++++G + NA R SG +P + T++ V+S
Sbjct: 196 LFDEMPNRDLVSWNSLMSGLSGRGYLG--ACLNAFCRMRTE----SGRQPNEVTLLSVVS 249
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ +G L+ G +HG + K + V +L++MY K G LD A +F M +++
Sbjct: 250 ACAXMGALDEGKSLHGVVVKLGMSGKAKVV--NSLINMYGKLGFLDAASQLFEEMPVRSL 307
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLF 343
++W +M +G + + L + M+ G+ P+ T +L AC GL E +H +
Sbjct: 308 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAY 367
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ + G I + +++L + G L + + I + D I W ++L+ VH
Sbjct: 368 IH---RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDR-DTIAWTAMLAGYAVH-- 421
Query: 404 VALGEKVGKILLQLQPEVTFVD 425
A G + K+ + E VD
Sbjct: 422 -ACGREAIKLFDLMVKEGVEVD 442
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 208/377 (55%), Gaps = 40/377 (10%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L G+ +H ++ G+ + + LI+ YA ++ + ++VF M + S +WN+M
Sbjct: 235 LGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM 294
Query: 182 INGYCSQSK---------------------------KAKDCAFNALVLFRDMLVDVSGVK 214
IN Y K ++DC ++ R + GV
Sbjct: 295 INVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISR---MRTEGVT 351
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P TM+ +L V S L G +HG + K E+DV +G L++MYSKCG L N+
Sbjct: 352 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL--ESDVPVGNVLIEMYSKCGSLRNSF 409
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F M+ K+V+TWTA+ + ++G+G +A+R M G+ P+ V F ++ AC H+G
Sbjct: 410 QVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSG 469
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LVEEGL+ F MK + +EP I+HY+C+VDLL R+ L++A +FI+ +P+KPD+ +W +L
Sbjct: 470 LVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGAL 529
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
LSAC + GD + E+V + +++L P+ T +V +SNIYA+ +W V S+RK
Sbjct: 530 LSACRMSGDTEIAERVSERIIELNPDDTGY--------YVLVSNIYAALGKWDQVRSIRK 581
Query: 455 QMKVKRVETEPGSSILQ 471
+K + ++ +PG S ++
Sbjct: 582 SIKARGLKKDPGCSWME 598
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 105/430 (24%), Positives = 198/430 (46%), Gaps = 58/430 (13%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L + T + + ++H+ +IT L ++ A+LI Y + P S+ VF P N
Sbjct: 23 LASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFR-DPTSS---FSVFRLASPSN 78
Query: 74 -LFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++L+N++IR L + L D +T+ + +CA L + +
Sbjct: 79 NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA---GLLDFEMAK 135
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH V GF ++ + LI Y D+ +KVF++MP+R +WN++I+GY +
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195
Query: 190 --KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+A + + ++ LF +M V+ KP T+ +L LG LEFG VH YM +
Sbjct: 196 YWNEALEIYYQSIKLFMEM---VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 252
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y E D L++MY+KCG L + +FS M+ K+ ++W +M +GK +++++
Sbjct: 253 Y--ECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKV 310
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS------------------- 348
++M+ + +T+ ++ A+C H+ GL + M++
Sbjct: 311 FENMK----ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 366
Query: 349 ---------------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
K G+E + + ++++ + G L ++ + K D + W +
Sbjct: 367 LAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTA 425
Query: 394 LLSACNVHGD 403
L+SAC ++G+
Sbjct: 426 LISACGMYGE 435
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 234/455 (51%), Gaps = 33/455 (7%)
Query: 24 IKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQ HA+L+ T + PL +L + + H V T + FLF++L R
Sbjct: 23 LKQAHARLVVTGHSRCLPLITKLA----NLAVAAGAAPYAHLVATSHPASDSFLFSSLAR 78
Query: 83 CTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
Q + L F + L F F + +CA LS L G +H H G
Sbjct: 79 AATHQGLPLAALAFYRCLLSAALPFSSFAFTAVAKACA---DLSALRTGMTVHAHSILLG 135
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F + V T L+ Y+ + +K+FD + ++ WNAMI+GY + A
Sbjct: 136 FGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGY-----EQNGLAEQG 190
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND--VFIG 257
+ ++++M V+ P T V LS +Q G L+ G V E+ D VF+G
Sbjct: 191 IEVYKEM--KVAKAVPDSMTFVATLSACAQAGALDLGREV----ERRIVSERMDISVFLG 244
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
+ALV+MY++CG +D A F ++E+NV+TWT+M G +HG G+EAI+L MR G
Sbjct: 245 SALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPP 304
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN VTF ++ +AC HAGL+ EG F MK +G+ P ++HY +VD+ GRAG LEEA
Sbjct: 305 PNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQ 364
Query: 378 FIM-GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
FI +P P +W ++L AC +H + +LG +V + L++L+PE V L
Sbjct: 365 FIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIRLEPE--------NPSYHVLL 416
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SNIYA + + VE VR M +R++ + G S+++
Sbjct: 417 SNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIE 451
>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 597
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 154/446 (34%), Positives = 239/446 (53%), Gaps = 32/446 (7%)
Query: 19 TTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
+ P +K+IHA +I + L QL++ + + VF P +FL+
Sbjct: 22 SKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQ----VFDEMPKPRIFLW 77
Query: 78 NTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NTL +R P +SVL++ G+ D+FTY F + + ++ L L G +H
Sbjct: 78 NTLFKGYVRNQLPFESVLLYKKMRDLGVRP-DEFTYPFVVKAISQ---LGVLPCGVSLHA 133
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
HV K GF +VAT L+ Y ++SS + +F+ M ++ WNA I C Q+ +
Sbjct: 134 HVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFI-AVCVQTGNSA 192
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL F M D V+ T+V +LS QLG L+ G ++ K E +
Sbjct: 193 I----ALEYFNKMCAD--AVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEI--ECN 244
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+ + A +DM+ KCG + A ++F M+++NV++W+ M G A++G EA+ L M++
Sbjct: 245 IIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQN 304
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK--SKWGVEPHIKHYSCIVDLLGRAGH 371
G++PN VTF + +AC HAGLV EG F M + +EP +HY+C+VDLLGR+G
Sbjct: 305 EGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGL 364
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
LEEAY FI + ++PD +W +LL AC VH D+ LG+KV +L++ P++
Sbjct: 365 LEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDI--------GS 416
Query: 432 DFVALSNIYASAERWPDVESVRKQMK 457
V LSNIYA+A +W V+ VR +M+
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMR 442
>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Brachypodium distachyon]
Length = 571
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/410 (34%), Positives = 223/410 (54%), Gaps = 31/410 (7%)
Query: 72 PNLFLFNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL---ST 124
P F +NT IR P +V ++ + L +++TY L +CAR
Sbjct: 55 PTTFSYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPRE 114
Query: 125 LWLGRQIHVHVTKRGF-MFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAM 181
G +H + +RG + ++ +++ FYA+ D+ + ++VFD+ P R A WN++
Sbjct: 115 AAAGTAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSL 174
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
++ Y SQ + L LFR M V + T++ V+S S LG L+ G H
Sbjct: 175 LHAYLSQGLYT-----HVLRLFRQM------VATDEVTLLAVVSACSHLGALDTGRWAHA 223
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
Y +T + +GTAL++MY +CG +++A +F M +K+V TW+ M G+A++G
Sbjct: 224 YHARTCRNTTRN--LGTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVNGLP 281
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+A++L M++ GV P+++T T++ +AC HAG+V+EG M ++ ++P I+HY C
Sbjct: 282 RDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEHYGC 341
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDLLGRAG LEEA I +P K D LW +LL AC H +V +G+ +L+L P
Sbjct: 342 VVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLDPHH 401
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
AC V LSN YA+A +W V+ VR MK R+ PGSSI++
Sbjct: 402 AG---AC-----VFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVE 443
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 231/442 (52%), Gaps = 56/442 (12%)
Query: 65 VFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
VF + ++N ++RC + A + +G LT D T + AL +C+R
Sbjct: 103 VFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGD 162
Query: 122 LSTLWLGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
LS LGR+IH ++ G F++ VA L+ Y N + +F++MP R+ +W
Sbjct: 163 LS---LGRKIHAYMD--GVTGFSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTT 217
Query: 181 MINGYC--SQSKKAK------------------------DCAFNALVLFRDMLVDVSGVK 214
+++GY Q KA+ C AL LFRDM + ++
Sbjct: 218 LVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDM--QMHQIE 275
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
P T+V +L+ + LG L+ G +H + E + D +GTAL+DMY+KCG ++ ++
Sbjct: 276 PDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNM--KLDAVLGTALIDMYAKCGHVEKSV 333
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F RM ++ WTA+ G+A +G+ A+ L + M KP++VTF + +ACCH G
Sbjct: 334 EVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGG 393
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRS 393
LV+EG F MK + + P ++HYSC+V+LLGRAG L+EA I IPI DA+ L+ +
Sbjct: 394 LVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGA 453
Query: 394 LLSACNVHGDVALGE----KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
L++AC G+V + E ++GK Q+ P+V + +SN+YA+A RW DV
Sbjct: 454 LITACKAQGNVKMSERLTKRIGKQGYQI-PDVNLL-----------MSNVYATASRWEDV 501
Query: 450 ESVRKQMKVKRVETEPGSSILQ 471
VR +M V+ G S+++
Sbjct: 502 VRVRSKMAHPSVKKNAGCSLIE 523
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/455 (24%), Positives = 193/455 (42%), Gaps = 94/455 (20%)
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
L TL R + D + V+ +GL+ D FTY F L + +L GR+ H
Sbjct: 16 LLIRTLARRSSHADVMAVYYDLRERGLVA-DSFTYPFVLRAIG---ALQISVEGRKAHAA 71
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K GF ++ A++L+ Y + + +KVFD+MP R+ WN M+ Y + +
Sbjct: 72 TLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTE- 130
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT--FYMPEN 252
A+ L +M + + P T++ L+ S+ G L G +H YM+ F +P
Sbjct: 131 ----AVALAEEM--ERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLP-- 182
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN---------- 302
+ AL+DMY K GCL+ A+ +F +M +NV++WT + +G A G+ +
Sbjct: 183 ---VANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCT 239
Query: 303 ---------------------EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG-- 339
EA+ L M+ ++P+ T +L C + G +++G
Sbjct: 240 EKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQL 299
Query: 340 LHLF---DNMK-------------SKWG-VEPHIKHYS--------------CIVDLLGR 368
+H F NMK +K G VE ++ + C + G+
Sbjct: 300 IHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQ 359
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK---VGKILLQLQPEVTFVD 425
AG E + + KPD++ + +LSAC G V G K K + +++P V
Sbjct: 360 AGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRV---- 415
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
E + L N+ A + + E + K + + +
Sbjct: 416 -----EHYSCLVNLLGRAGQLDEAEKLIKSIPINK 445
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D + ++L+DMY+ G L+ A +F M ++ V+ W M G+ EA+ L + M
Sbjct: 80 DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
+ P+ VT + AC AG + G + M G + + ++D+ + G L
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN--ALLDMYVKNGCL 197
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432
EEA N +P + + + W +L+S G V +K + Q CT +D
Sbjct: 198 EEAVNLFEKMPSR-NVVSWTTLVSGYAFAGQV---DKARLLFHQ-----------CTEKD 242
Query: 433 FV---ALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ A+ N Y + + S+ + M++ ++E +
Sbjct: 243 LIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPD 277
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 138/417 (33%), Positives = 219/417 (52%), Gaps = 23/417 (5%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLIRCTPPQD---SVLVFAYWVSKGLLTFDDFTYVFALG 114
S V +F +L +NT+I L + L D FT L
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLP 308
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
A +S G++IH ++G V VA++LI YA + +VF + R
Sbjct: 309 LIAENVDISK---GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERD 365
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+WN++I G C Q+ + L FR ML+ + +KP + ++ + L L
Sbjct: 366 GISWNSIIAG-CVQNGLFDE----GLKFFRQMLM--AKIKPKSYSFSSIMPACAHLTTLH 418
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +HGY+ + + + ++FI ++LVDMY+KCG + A IF RMR +++++WTAM G
Sbjct: 419 LGKQLHGYITRNGF--DENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMG 476
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
A+HG +AI L + M+ G++PN V F ++ AC HAGLV+E F++M +G+ P
Sbjct: 477 CALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAP 536
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
++HY+ + DLLGRAG LEEAY+FI G+PI P +W +LLSAC VH +V + EKV +
Sbjct: 537 GVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRI 596
Query: 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L++ P+ T ++ L+NIY++A RW + R ++ + P S ++
Sbjct: 597 LEVDPKNTGA--------YILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIE 645
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/418 (21%), Positives = 175/418 (41%), Gaps = 51/418 (12%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
+I + S +Q+HAQ++ S + L+ +Y S ++ F HF PP L
Sbjct: 20 SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL--FNTLHF-PPAL-A 75
Query: 77 FNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+ ++IRC P S+ F ++ GL D + L +CA L+ LG +H
Sbjct: 76 WKSVIRCYTSHGLPHKSLGSFIGMLASGLYP-DHNVFPSVLKACAMLMDLN---LGESLH 131
Query: 133 VHVTKRGFMFNVLVATTLIHFYA-------SNKDISSGKKVFDQMPMRSSATWNAMINGY 185
++ + G F++ L++ Y+ S + +V D+M R+ + A +
Sbjct: 132 GYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVL-V 190
Query: 186 CSQSKKAKDC-AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
+Q +K D AFN V R + VL + Y
Sbjct: 191 GNQGRKVSDIEAFNYDVSCRSREFEAQ-----------VLEID--------------YKP 225
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
++ Y +G + D+ S +D+ IF M EK++++W + G A +G E
Sbjct: 226 RSEYREMEACNLGQQIKDI-SHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGET 284
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ ++ M +KP++ T +S+ + +G + + G++ + S ++D
Sbjct: 285 LTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIH-GCSIRQGLDAEVYVASSLID 343
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL--QLQPE 420
+ + + ++Y + + + D I W S+++ C +G G K + +L +++P+
Sbjct: 344 MYAKCTRVVDSYR-VFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPK 400
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/411 (32%), Positives = 206/411 (50%), Gaps = 61/411 (14%)
Query: 120 CSLSTLWL-GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
C+ WL G+ +H + G ++ V L+ YA + KVFD++ + +W
Sbjct: 23 CASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSW 82
Query: 179 NAMINGYCSQSKKAKDC------------------------------------------- 195
NAM+NGY SQ + +D
Sbjct: 83 NAMVNGY-SQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQ 141
Query: 196 ---AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
A +AL LF M VKP T+ C L ++L L G +H Y+ + +
Sbjct: 142 HGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHF-DSA 200
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+++ L+DMY+K G +D A +F +++KN ++WT++ TG +HG+G EA+ + D MR
Sbjct: 201 FLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMR 260
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
G++P+ VT + AC H+G++++G+ F++M ++GV P +HY+C+VDLLGRAG L
Sbjct: 261 RVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRL 320
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432
EA I G+ ++P +I+W +LLS C +H +V LGE K LL+L E
Sbjct: 321 NEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE--------NDGS 372
Query: 433 FVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ----TTTHYTLD 479
+ LSNIYA+A RW DV VR MK + PG S +Q TTT Y D
Sbjct: 373 YTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVAD 423
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
++P ++V VL + +G G VHG ++ D+F+G ALVDMY+KCG +D
Sbjct: 9 MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFE--DLFVGNALVDMYAKCGMVDE 66
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F R++EK+V++W AM G + G+ +A+ L + MR+ ++ N V+++++ AA
Sbjct: 67 ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126
Query: 333 AGLVEEGLHLFDNMK 347
GL E L +F M+
Sbjct: 127 RGLGCETLDVFREMQ 141
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 228/448 (50%), Gaps = 58/448 (12%)
Query: 72 PNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA--RFCSLSTL 125
PN+ +N L+ R +D+VL +G L D T V SCA + +
Sbjct: 119 PNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLP--DATGV----SCALSAVGDVGDV 172
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+G Q+H +V K G + VAT LI Y +VFD+ A+ NA++ G
Sbjct: 173 AVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGL 232
Query: 186 CSQSKKAKD-------------------------CAFN-----ALVLFRDMLVDVSGVKP 215
++ ++ C N A+ LFR+M + G++P
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE--GIEP 290
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
T+ CVL + + L G H + + K F+ +D+++G+ALVDMY+KCG + +A
Sbjct: 291 NSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFH---HDIYVGSALVDMYAKCGRVRDAR 347
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+IF M +NV++W AM G A+HG+ A+RL SM+ KP+ VTFT + AC AG
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
EEG F+ M+ K G+ P ++HY+C+V LLGRAG L++AY+ I +P +PD +W SL
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSL 467
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L +C VHG+V L E + L QL+PE + ++V LSNIYAS + W V +R
Sbjct: 468 LGSCRVHGNVVLAEVAAENLFQLEPE--------NAGNYVLLSNIYASKKMWDGVNRLRD 519
Query: 455 QMKVKRVETEPGSSILQ--TTTHYTLDG 480
MK ++ E G S ++ H L G
Sbjct: 520 MMKTVGLKKEKGCSWIEIKNKVHMLLAG 547
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 31/253 (12%)
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-------- 190
G + VA++L+H Y + + V D MP R+ W+A+I + S
Sbjct: 50 GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109
Query: 191 --------KAKDCAFNALV-------LFRDMLVDV-----SGVKPTDTTMVCVLSVSSQL 230
+ +N LV RD ++ + G P T + C LS +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
G + G +HGY+ K D + TAL+DMY KCG D + +F +V + A
Sbjct: 170 GDVAVGEQLHGYVVKAGC--RLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNA 227
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ G++ + + +EA+RL G++ N V++TS+ A C G E + LF M+S+
Sbjct: 228 LVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSE- 286
Query: 351 GVEPHIKHYSCIV 363
G+EP+ C++
Sbjct: 287 GIEPNSVTIPCVL 299
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 11/188 (5%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D F+ ++L+ Y + G +A + M + V+ W+A+ A HG A LL+ MR
Sbjct: 54 DAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMR 113
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
GV+PN +T+ L + +G + + M + G P SC + +G G +
Sbjct: 114 SDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGE-GFLPDATGVSCALSAVGDVGDV 172
Query: 373 ---EEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
E+ + +++ + DA + +L+ +++G +++ ++ E + +DVA
Sbjct: 173 AVGEQLHGYVVKAGCRLDACVATALI---DMYGKCGRADEIVRVF----DESSHMDVASC 225
Query: 430 SEDFVALS 437
+ LS
Sbjct: 226 NALVAGLS 233
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 194/366 (53%), Gaps = 41/366 (11%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L +CAR SL G+ +H ++ N+ V L+ Y + VF M +
Sbjct: 359 LHACARSGSLDN---GKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVV 415
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
+ +WN MI +KP TM C+L + L
Sbjct: 416 KDIISWNTMI----------------------------GELKPDSRTMACILPACASLSA 447
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
LE G +HGY+ + Y +D + ALVD+Y KCG L A L+F + K++++WT M
Sbjct: 448 LERGKEIHGYILRNGY--SSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 505
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
+G +HG GNEAI + MRD G++P+ V+F S+ AC H+GL+E+G F MK+ + +
Sbjct: 506 SGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 565
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
EP ++HY+C+VDLL R G+L +AY FI +PI PDA +W +LL C ++ D+ L EKV +
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAE 625
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+ +L+PE T +V L+NIYA AE+W +V+ +R+++ K + PG S ++
Sbjct: 626 RVFELEPENTGY--------YVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEI 677
Query: 473 TTHYTL 478
L
Sbjct: 678 KGKVNL 683
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 130/255 (50%), Gaps = 16/255 (6%)
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+F ++V + K S ++FD++ R +WN+MI+GY S +
Sbjct: 187 LFKIMVEKGI-----EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQ 241
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+++ + VD++ T++ VL + G L G VH K+ + E + L
Sbjct: 242 MMYLGIDVDLA-------TIISVLVGCANSGTLSLGKAVHSLAIKSTF--ERRINFSNTL 292
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMYSKCG LD AL +F +M E+NV++WT+M G G+ + AIRLL M GVK +
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDV 352
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
V TS+ AC +G ++ G + D +K+ +E ++ + ++D+ + G ++ A N +
Sbjct: 353 VATTSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYTKCGSMDGA-NSVF 410
Query: 381 GIPIKPDAILWRSLL 395
+ D I W +++
Sbjct: 411 STMVVKDIISWNTMI 425
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 40/271 (14%)
Query: 50 CTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTF 104
C + S + K VH ++ + NLF+ N L+ +C + VF+ V K ++++
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISW 421
Query: 105 ---------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
D T L +CA SLS L G++IH ++ + G+ + VA L+ Y
Sbjct: 422 NTMIGELKPDSRTMACILPACA---SLSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVK 214
+ + +FD +P + +W MI+GY + A FN + RD +G++
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEM---RD-----AGIE 530
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL------VDMYSKCG 268
P + + + +L S GLLE G + FY+ +ND I L VD+ S+ G
Sbjct: 531 PDEVSFISILYACSHSGLLEQGW-------RFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583
Query: 269 CLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
L A + + W A+ G I+
Sbjct: 584 NLSKAYEFIETLPIAPDATIWGALLCGCRIY 614
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
D +G LV +Y+ CG L +F M +KNV W M + A G E+I L M
Sbjct: 133 DEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMV 192
Query: 313 DCGVK----------------PNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+ G++ + +++ S+ + GL E GL ++ M
Sbjct: 193 EKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQM 242
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 150/465 (32%), Positives = 238/465 (51%), Gaps = 31/465 (6%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST-KIVHFVFTHFDPPNLFL 76
IT+ + Q+HA+++ + +L+ SP + PN F
Sbjct: 3 ITSMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFY 62
Query: 77 FNTLIRC----TPPQDSVLVFAYW-----VSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
+NT+IR T P + +F Y S + D FTY F L +C++
Sbjct: 63 YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHAR---F 119
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+QIH V K G + + LIH Y+ + + + KVFD+MP R +W ++I+G+
Sbjct: 120 GKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRDVVSWTSIIDGFVD 179
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKT 246
D A+ LF M+ + G++P + T+ VL + G L G +H ++ EK
Sbjct: 180 N-----DRPIEAIRLFTHMIEN--GIEPNEVTVASVLRACADTGALNTGERIHSFVKEKN 232
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
F N + TAL+DMY+KCGC+D AL +F EK+V WTA+ G+A HG +AI
Sbjct: 233 FSSNAN---VSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIE 289
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
++M+ VK + T++ +A +AGLV EGL F +K K ++P I+HY C+VD+L
Sbjct: 290 FFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLK-KHKIKPTIQHYGCVVDML 348
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
RAG L++A FI +PI+PDA+LWR+L+ C + GDV E++ + L E+ +D
Sbjct: 349 TRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVREL-----ELLNMDS 403
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
T +V L N+YA+ +W + R+ M + + P S ++
Sbjct: 404 RDTGS-YVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIE 447
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + C+ + L+F +++GL + AL +CA SL L +G Q+H +
Sbjct: 195 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA---SLDHLRMGEQLHALL 251
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ +L+ YA I +FD+M ++ + +++A+++GY Q+ +A++
Sbjct: 252 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV-QNGRAEE- 309
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A ++F+ M V+P TMV ++ S L L+ G C HG + E
Sbjct: 310 ---AFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS-- 362
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
I AL+DMY+KCG +D + +F+ M +++++W M G IHG G EA L M + G
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 422
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
P+ VTF L +AC H+GLV EG H F M +G+ P ++HY C+VDLL R G L+EA
Sbjct: 423 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEA 482
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +P++ D +W +LL AC V+ ++ LG+KV +++ +L PE T +FV
Sbjct: 483 YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT--------GNFVL 534
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIY++A R+ + VR KV+ + PG S ++
Sbjct: 535 LSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 146/342 (42%), Gaps = 60/342 (17%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+++T+ FAL +C+ +L+ GR IH H G ++ V+T L+ Y +
Sbjct: 9 NNYTFPFALKACS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F MP R WNAM+ GY +A+ M + + ++P +T+V +L
Sbjct: 66 HIFATMPARDLVAWNAMLAGYAHHGMY-----HHAVAHLLSMQMQMHRLRPNASTLVALL 120
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPEND--------VFIGTALVDMYSKCGCLDNALLI 276
+ +Q G L G VH Y + P + V +GTAL+DMY+KCG L A +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM-----------------RDC----- 314
F M +N +TW+A+ G + + +A L +M R C
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240
Query: 315 --------------GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GV + SL + AGL+++ + LFD M K V YS
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YS 295
Query: 361 CIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACN 399
+V + G EEA + + ++PDA SL+ AC+
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 337
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V P + T L S L G +H + + D+F+ TAL+DMY KC CL +
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGL--QADLFVSTALLDMYVKCACLPD 63
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAAC 330
A IF+ M ++++ W AM G A HG + A+ L SM+ ++PNA T +L
Sbjct: 64 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123
Query: 331 CHAGLVEEG--LH-------LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
G + +G +H L N SK + + + ++D+ + G L A
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183
Query: 382 IPIKPDAILWRSLLSA 397
+P + + + W +L+
Sbjct: 184 MPAR-NEVTWSALIGG 198
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 239/462 (51%), Gaps = 40/462 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLY--CTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
KQ H Q + +S + LI +Y C K ++ + +F N+ + +LI
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNAR------VLFDEIPRRNIVTWTSLI 155
Query: 82 ----RCTPPQDSVLVFAYWV---SKGL-----LTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ ++++VF ++ S+G + D + L +C+R +S +
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSR---VSNKAVSE 212
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+H K G + V TL+ YA ++S +KVFD M + +WN+MI Y
Sbjct: 213 GVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNG 272
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ +A +F ML G K + T+ +L + G L G C+H + K Y+
Sbjct: 273 -----LSTDAFEVFHGML-KAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYV 326
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
N+V + T+++DMY KCG + A F M+EKNV +WTAM G +HG EA+ +
Sbjct: 327 --NNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFY 384
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M GVKPN +TF S+ AAC HAG +EEG F+ M ++ VEP ++HY C+VDLLGRA
Sbjct: 385 QMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRA 444
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G+++EAYN I + ++ D +LW SLL+AC +H DV L E + L +L P C
Sbjct: 445 GYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPS------NCG 498
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V L+NIYA A RW DVE +R +K + + PG S+++
Sbjct: 499 Y--YVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVE 538
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 189/398 (47%), Gaps = 30/398 (7%)
Query: 54 ASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTY 109
A+ +T + +FD +++ +N+LI R +S+ F+ W+ K + + T+
Sbjct: 27 AAATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFS-WMRKLDIKPNRSTF 85
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
A+ SC+ L++ G+Q H GF ++ V++ LI Y+ +S+ + +FD+
Sbjct: 86 PCAIKSCSALFDLNS---GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDE 142
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-------GVKPTDTTMVC 222
+P R+ TW ++I GY D A AL++F++ L + S G M+
Sbjct: 143 IPRRNIVTWTSLITGYVQN-----DDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMIS 197
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VLS S++ VHG K + + + L+D Y+KCG + + +F M E
Sbjct: 198 VLSACSRVSNKAVSEGVHGVAIKVGL--DKVMGVENTLLDAYAKCGEVSLSRKVFDDMAE 255
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
K+V++W +M A +G +A + M + G K N VT ++L AC H G + G+
Sbjct: 256 KDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMC 315
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
L D + K G ++ + I+D+ + G E A N G+ K + W ++++ +H
Sbjct: 316 LHDQV-IKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEK-NVRSWTAMIAGYGMH 373
Query: 402 G--DVALGEKVGKILLQLQPE-VTFVDV--ACTSEDFV 434
G AL I ++P +TF+ V AC+ F+
Sbjct: 374 GFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFL 411
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 205/356 (57%), Gaps = 17/356 (4%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F + + G ++H + GF +V V ++LI YA+ KVFD +P+R W
Sbjct: 180 FAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILW 239
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+++ G C+Q+ ++ AL +FR ML +GV+P T ++ V L L FG
Sbjct: 240 NSLLAG-CAQNGSVEE----ALGIFRRMLQ--AGVRPVPVTFSSLIPVCGNLASLRFGKQ 292
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H Y+ + E++VFI ++L+DMY KCG + A IF +M +V++WTAM G A+H
Sbjct: 293 LHAYVICGGF--EDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALH 350
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EA+ L + M KPN +TF ++ AC HAGLV++G F +M + +G+ P ++H
Sbjct: 351 GPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEH 410
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
++ + D LGRAG L+EAYNFI + IKP A +W +LL AC VH + L E+V K +++L+
Sbjct: 411 FAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELE 470
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
P + V LSN+Y+++ RW + +R+ M+ K ++ +P S ++ +
Sbjct: 471 PR--------SIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKS 518
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 143/310 (46%), Gaps = 33/310 (10%)
Query: 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY----------------- 154
AL SCA +L LG +H + G + A L++ Y
Sbjct: 56 ALKSCA---ALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVD 112
Query: 155 --ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
S+ S +KVFD+M R +WN ++ G C++ + + AL R M + G
Sbjct: 113 VPGSSTAFESVRKVFDEMIERDVVSWNTLVLG-CAEEGRHHE----ALGFVRKMCRE--G 165
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
+P T+ VL + ++ ++ G VHG+ + + ++DVF+G++L+DMY+ C D
Sbjct: 166 FRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGF--DSDVFVGSSLIDMYANCTRTDY 223
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
++ +F + ++ + W ++ G A +G EA+ + M GV+P VTF+SL C +
Sbjct: 224 SVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGN 283
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
+ G L + G E ++ S ++D+ + G + A+ I PD + W
Sbjct: 284 LASLRFGKQLHAYVICG-GFEDNVFISSSLIDMYCKCGEISIAH-CIFDKMSSPDVVSWT 341
Query: 393 SLLSACNVHG 402
+++ +HG
Sbjct: 342 AMIMGYALHG 351
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 104/252 (41%), Gaps = 25/252 (9%)
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+A+ LF M + ++ L + LGL GA +H ++ D F
Sbjct: 31 DAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFA--DRFTA 88
Query: 258 TALVDMYSKCGC-------------------LDNALLIFSRMREKNVLTWTAMATGMAIH 298
AL+++Y K C ++ +F M E++V++W + G A
Sbjct: 89 NALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEE 148
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ +EA+ + M G +P++ T +++ V+ GL + + G + +
Sbjct: 149 GRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVH-GFAFRNGFDSDVFV 207
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
S ++D+ + + +P++ D ILW SLL+ C +G V E +G LQ
Sbjct: 208 GSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSVE--EALGIFRRMLQ 264
Query: 419 PEVTFVDVACTS 430
V V V +S
Sbjct: 265 AGVRPVPVTFSS 276
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 207/370 (55%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H + GF N+ + LI Y ++ +
Sbjct: 219 DESTMVSVVSACAQSASIE---LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAC 275
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+ + + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 276 GLFEGLSYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGESPNDVTMLSIL 328
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG +E G +H Y+ K N T+L+DMY+KCG ++ A +F + ++
Sbjct: 329 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 388
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ N A + MR ++P+ +TF L +AC H+G+++ G H+F
Sbjct: 389 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 448
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+MK + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 449 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNV 508
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++P+ +V LSNIYA+A RW +V +R + K ++
Sbjct: 509 ELGESYAQNLIKIEPK--------NPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 560
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 561 PGCSSIEIDS 570
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 134/505 (26%), Positives = 221/505 (43%), Gaps = 92/505 (18%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
S ++ IHAQ+I L + + +C VF PNL ++NT+
Sbjct: 1 SSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMF 60
Query: 82 R----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + P ++ ++ +S GLL + +T+ F L SCA+ + G+QIH HV K
Sbjct: 61 RGHALSSDPVSALYLYVCMISLGLLP-NCYTFPFLLKSCAKSKAFRE---GQQIHGHVLK 116
Query: 138 RGFMFNVLVATTLIHFYASN---------------KD----------------ISSGKKV 166
G+ ++ V T+LI Y N +D I+S +K+
Sbjct: 117 LGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKM 176
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD++P++ +WNAMI+GY + AL LF++M+ + V+P ++TMV V+S
Sbjct: 177 FDEIPIKDVVSWNAMISGYAETGNNKE-----ALELFKEMM--KTNVRPDESTMVSVVSA 229
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+Q +E G VH +++ + +++ I AL+D+Y KCG ++ A +F + K+V+
Sbjct: 230 CAQSASIELGRQVHSWIDDHGF--GSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVI 287
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD 344
+W + G EA+ L M G PN VT S+ AC H G +E G +H++
Sbjct: 288 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYI 347
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---------------------- 382
N + K GV H + ++D+ + G +E A I
Sbjct: 348 NKRLK-GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRAN 406
Query: 383 ------------PIKPDAILWRSLLSACNVHGDVALGEKV-------GKILLQLQPEVTF 423
I+PD I + LLSAC+ G + LG + KI +L+
Sbjct: 407 AAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCM 466
Query: 424 VDVACTSEDFVALSNIYASAERWPD 448
+D+ S F + + E PD
Sbjct: 467 IDLLGHSGLFKEAEEMINTMEMEPD 491
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 203/369 (55%), Gaps = 25/369 (6%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+T+ LG+C L+ L H K G +V V ++LI Y D+ G++V
Sbjct: 183 YTFSSVLGACGTPGVLAAL------HASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRV 236
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+M R WN++I G+ A+ LF M + +G T+ VL
Sbjct: 237 FDEMVTRDLVVWNSIIAGFAQSGD-----GVGAIELF--MRMKDAGFSANQGTLTSVLRA 289
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+ + +LE G VH ++ K E D+ + AL+DMY KCG L++A +F RM +++V+
Sbjct: 290 CTGMVMLEAGRQVHAHVLKY----ERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVI 345
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W+ M +G+A +GK EA+R+ D M+ GV PN +T + AC HAGLVE+G + F +M
Sbjct: 346 SWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSM 405
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K +G++P +H++C+VDLLGRAG L+EA FI + ++PDA++WR+LL AC +H L
Sbjct: 406 KKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNL 465
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
+ +L+L+P+ V LSN YA +W D E K M+ + ++ EPG
Sbjct: 466 AAYAAREILKLEPD--------DQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPG 517
Query: 467 SSILQTTTH 475
S ++ H
Sbjct: 518 RSWIELEKH 526
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 23/291 (7%)
Query: 128 GRQIHVHVTKRGFMFN--------VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
GR IH HV G + + + V+ +L+ YA + ++FD+MP R+ TW
Sbjct: 91 GRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWT 150
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ + + ++ + ++RD GV P T VL G+L A +
Sbjct: 151 TVVAALANADGRKEEALRFLVAMWRD------GVAPNAYTFSSVLGACGTPGVL---AAL 201
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H K ++DVF+ ++L+D Y K G LD +F M ++++ W ++ G A G
Sbjct: 202 HASTVKVGL--DSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSG 259
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G AI L M+D G N T TS+ AC ++E G + ++ E + +
Sbjct: 260 DGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK---YERDLILH 316
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410
+ ++D+ + G LE+A +P + D I W +++S +G A +V
Sbjct: 317 NALLDMYCKCGSLEDAEALFHRMPQR-DVISWSTMISGLAQNGKSAEALRV 366
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + C+ + L+F +++GL + AL +CA SL L +G Q+H +
Sbjct: 195 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA---SLDHLRMGEQLHALL 251
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ +L+ YA I +FD+M ++ + +++A+++GY Q+ +A++
Sbjct: 252 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV-QNGRAEE- 309
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A ++F+ M V+P TMV ++ S L L+ G C HG + E
Sbjct: 310 ---AFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS-- 362
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
I AL+DMY+KCG +D + +F+ M +++++W M G IHG G EA L M + G
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 422
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
P+ VTF L +AC H+GLV EG H F M +G+ P ++HY C+VDLL R G L+EA
Sbjct: 423 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEA 482
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +P++ D +W +LL AC V+ ++ LG+KV +++ +L PE T +FV
Sbjct: 483 YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT--------GNFVL 534
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIY++A R+ + VR KV+ + PG S ++
Sbjct: 535 LSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 570
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 146/342 (42%), Gaps = 60/342 (17%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+++T+ FAL +C+ +L+ GR IH H G ++ V+T L+ Y +
Sbjct: 9 NNYTFPFALKACS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F MP R WNAM+ GY +A+ M + + ++P +T+V +L
Sbjct: 66 HIFATMPARDLVAWNAMLAGYAHHGMY-----HHAVAHLLSMQMQMHRLRPNASTLVALL 120
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPEND--------VFIGTALVDMYSKCGCLDNALLI 276
+ +Q G L G VH Y + P + V +GTAL+DMY+KCG L A +
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM-----------------RDC----- 314
F M +N +TW+A+ G + + +A L +M R C
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240
Query: 315 --------------GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GV + SL + AGL+++ + LFD M K V YS
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YS 295
Query: 361 CIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACN 399
+V + G EEA + + ++PDA SL+ AC+
Sbjct: 296 ALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACS 337
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
V P + T L S L G +H + + D+F+ TAL+DMY KC CL +
Sbjct: 6 VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGL--QADLFVSTALLDMYVKCACLPD 63
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAAC 330
A IF+ M ++++ W AM G A HG + A+ L SM+ ++PNA T +L
Sbjct: 64 AAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLL 123
Query: 331 CHAGLVEEG--LH-------LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
G + +G +H L N SK + + + ++D+ + G L A
Sbjct: 124 AQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDA 183
Query: 382 IPIKPDAILWRSLLSA 397
+P + + + W +L+
Sbjct: 184 MPAR-NEVTWSALIGG 198
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 211/385 (54%), Gaps = 25/385 (6%)
Query: 97 VSKGLLTFDDFTYVFAL-------GSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVAT 148
+S L +DD ++ L + R C+ L+ L G+++H H+ K G + V
Sbjct: 292 ISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGN 351
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
+LI YA + + D+M + + +++A+I+G C Q+ A+ AL++FR M
Sbjct: 352 SLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISG-CVQNGYAE----KALLIFRQM-- 404
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
SG+ P TM+ +L S L L+ G C HGY + ND I A++DMYSKCG
Sbjct: 405 QSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGF--TNDTSICNAIIDMYSKCG 462
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+ + IF RM+ +++++W M G IHG EA+ L ++ G+KP+ VT ++ +
Sbjct: 463 KITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLS 522
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC H+GLV EG + F +M + ++P + HY C+VDLL RAG+L+EAY FI +P P+
Sbjct: 523 ACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNV 582
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
+W +LL+AC H ++ +GE+V K + L PE T +FV +SNIY+S RW D
Sbjct: 583 RIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGT--------GNFVLMSNIYSSVGRWDD 634
Query: 449 VESVRKQMKVKRVETEPGSSILQTT 473
+R + + PG S ++ +
Sbjct: 635 AAYIRSIQRHHGYKKSPGCSWVEIS 659
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 177/372 (47%), Gaps = 27/372 (7%)
Query: 55 SPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYV 110
S ++ VF P++ L+N +IR P Q S+ ++ + + G+ T +FT+
Sbjct: 53 SRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV-TPTNFTFP 111
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
F L +C+ SL L LGR IH H G ++ V+T L+H YA + + +F+ +
Sbjct: 112 FLLKACS---SLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI 168
Query: 171 PM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
R WNAMI + A +A + + +GV P +T+V +L
Sbjct: 169 SHQDRDIVAWNAMIAAFSFH-------ALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIG 221
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
Q L G +H Y + F+ ++V + TAL+DMY+KC L A IF+ + +KN + W
Sbjct: 222 QANALHQGKAIHAYYIRNFFF--DNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCW 279
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+AM G +H ++A+ L D M C G+ P T ++ AC ++ G L +M
Sbjct: 280 SAMIGGYVLHDSISDALALYDDML-CIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHM 338
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K G++ + ++ + + G ++ A F+ + I D + + +++S C +G
Sbjct: 339 -IKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNG---Y 393
Query: 407 GEKVGKILLQLQ 418
EK I Q+Q
Sbjct: 394 AEKALLIFRQMQ 405
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 11/195 (5%)
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
AT L ++ S +I + VFDQ+P S WN MI Y + ++ L+ M
Sbjct: 44 ATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQ-----SIYLYLHM 98
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
L GV PT+ T +L S L L+ G +H + D+++ TAL+ MY+K
Sbjct: 99 L--QLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAH--ILGLSMDLYVSTALLHMYAK 154
Query: 267 CGCLDNALLIFSRM--REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
CG L A +F+ + ++++++ W AM + H + I + M+ GV PN+ T
Sbjct: 155 CGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLV 214
Query: 325 SLFAACCHAGLVEEG 339
S+ A + +G
Sbjct: 215 SILPTIGQANALHQG 229
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 153/489 (31%), Positives = 251/489 (51%), Gaps = 73/489 (14%)
Query: 25 KQIHAQLITNALKS-----PPL---YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
+QIH ++ S PL Y+++ + C +K VF N+ +
Sbjct: 163 RQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARK-----------VFDELPEKNVVM 211
Query: 77 FNTLI----RCTPPQDSVLVF--------AYWVS-------KGL---------------L 102
+NTLI RC +DS +F W S GL L
Sbjct: 212 YNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENL 271
Query: 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162
D +T+ L +C +L G+Q+H ++ + + N+ VA+ L+ Y K+I S
Sbjct: 272 QMDQYTFGSVLTACGGVMALQE---GKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKS 328
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+ VF +M ++ +W AM+ GY Q+ +++ A+ F DM G++P D T+
Sbjct: 329 AEAVFKKMTCKNVVSWTAMLVGY-GQNGYSEE----AVKTFSDM--QKYGIEPDDFTLGS 381
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
V+S + L LE GA H + + + + + ALV +Y KCG ++++ +F+ +
Sbjct: 382 VISSCANLASLEEGAQFHARALTSGLI--SFITVSNALVTLYGKCGSIEDSHRLFNEISF 439
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+ +TWTA+ +G A GK NE I L +SM G+KP+ VTF + +AC AGLVE+G +
Sbjct: 440 KDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQI 499
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F++M ++ G+ P HY+C++DL RAG +EEA NFI +P PDAI W +LLS+C +G
Sbjct: 500 FESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYG 559
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ +G+ + L++L P T +V LS++YA+ +W +V +RK M+ K +
Sbjct: 560 NMDIGKWAAEFLMELDPHNT--------ASYVLLSSVYAAKGKWEEVARLRKDMRDKGLR 611
Query: 463 TEPGSSILQ 471
EPG S ++
Sbjct: 612 KEPGCSWIK 620
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 222/500 (44%), Gaps = 81/500 (16%)
Query: 7 HRCFALLKLKAIT-TPSHIKQIHAQLITNALKSPP--LYAQLIQLYCTKKASPQSTKIVH 63
H C ALLKL T + K +H+ +I L P L LI Y + P + K
Sbjct: 11 HYC-ALLKLCCETHNFTKAKNLHSHII-KTLPYPETFLLNNLISSYAKLGSIPYACK--- 65
Query: 64 FVFTHFDPPNLFLFNT----------------LIRCTPPQDSV----LVFAYWVSKGLLT 103
VF PNL+ +NT L P +D V L+ Y GL+
Sbjct: 66 -VFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGY-AGCGLIY 123
Query: 104 FDDFTYVFALGSCARF----CSLSTLW----------LGRQIHVHVTKRGFMFNVLVATT 149
Y L + F + STL LGRQIH HV K GFM V V +
Sbjct: 124 QSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSP 183
Query: 150 LIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAF---------- 197
L+ Y+ IS +KVFD++P ++ +N +I G C + + +K F
Sbjct: 184 LVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISW 243
Query: 198 --------------NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
+A+ +FR+M ++ ++ T VL+ + L+ G VH Y+
Sbjct: 244 TSMITGFTQNGLDRDAIDIFREMKLE--NLQMDQYTFGSVLTACGGVMALQEGKQVHAYI 301
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
+T Y ++++F+ +ALVDMY KC + +A +F +M KNV++WTAM G +G E
Sbjct: 302 IRTDY--KDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEE 359
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A++ M+ G++P+ T S+ ++C + +EEG F G+ I + +V
Sbjct: 360 AVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALV 418
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQPE- 420
L G+ G +E+++ I K D + W +L+S G + +G + L+P+
Sbjct: 419 TLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDK 477
Query: 421 VTFVDV--ACTSEDFVALSN 438
VTF+ V AC+ V N
Sbjct: 478 VTFIGVLSACSRAGLVEKGN 497
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 211/409 (51%), Gaps = 42/409 (10%)
Query: 89 SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT 148
S+ F+ S+G+ D++TY L SC+ SLS L G+ +H V + GF V
Sbjct: 608 SLSFFSSMKSRGIWA-DEYTYAPLLKSCS---SLSDLRFGKCVHGEVIRTGFHRLGKVRI 663
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF----------- 197
++ Y S + +KVFD+MP R+ WN M+ G+C + +F
Sbjct: 664 GVVELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVS 723
Query: 198 ---------------NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
AL LF +M+ G P + T+V +L +S+ LG+L+ G +H
Sbjct: 724 WNSMISSLSKCGRDREALELFCEMID--QGFDPDEATVVTMLPISASLGVLDTGKWIHST 781
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
E + ++ + +G ALVD Y K G L+ A IF +M+ +NV++W M +G A++GKG
Sbjct: 782 AESNGLI-KDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGE 840
Query: 303 EAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
I L D+M + G V PN TF + A C + G VE G LF M ++ +EP +HY
Sbjct: 841 SGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGA 900
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDL+ R+G + EA+ F+ +P+ +A +W SLLSAC HGDV L E L++++P
Sbjct: 901 MVDLMSRSGRIREAFEFLRNMPVNANAAMWGSLLSACRSHGDVKLAELAAMELVKIEP-- 958
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
S ++V LSN+YA RW DVE VR MK + G S +
Sbjct: 959 ------GNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNCLRKTTGQSTI 1001
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 221/417 (52%), Gaps = 30/417 (7%)
Query: 63 HFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
H +F N+ + T+I +C Q ++ + + G+ + +TY L +C
Sbjct: 68 HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRP-NVYTYSSVLRACNG 126
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ R +H + K G +V V + LI +A + VFD+M + W
Sbjct: 127 MSDV------RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 180
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N++I G+ S+ AL LF+ M +G T+ VL + L LLE G
Sbjct: 181 NSIIGGFAQNSRSDV-----ALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQ 233
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
H ++ K + D+ + ALVDMY KCG L++A +F++M+E++V+TW+ M +G+A +
Sbjct: 234 AHVHIVKY----DQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQN 289
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EA++L + M+ G KPN +T + AC HAGL+E+G + F +MK +G+ P +H
Sbjct: 290 GYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREH 349
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C++DLLG+AG L++A + + +PDA+ WR+LL AC V ++ L E K ++ L
Sbjct: 350 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 409
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
PE + + LSNIYA++++W VE +RK+M+ ++ EPG S ++
Sbjct: 410 PE--------DAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQ 458
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 34/284 (11%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY-- 185
G I H+ G + + LI+ Y ++ ++FDQMP R+ +W MI+ Y
Sbjct: 32 GNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK 91
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
C +K A LVL ML D GV+P T VL + + + C G +++
Sbjct: 92 CKIHQK----ALELLVL---MLRD--GVRPNVYTYSSVLRACNGMSDVRMLHC--GIIKE 140
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
E+DV++ +AL+D+++K G ++AL +F M + + W ++ G A + + + A+
Sbjct: 141 GL---ESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVAL 197
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY------ 359
L M+ G T TS+ AC L+E G+ HI Y
Sbjct: 198 ELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ----------AHVHIVKYDQDLIL 247
Query: 360 -SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ +VD+ + G LE+A + + D I W +++S +G
Sbjct: 248 NNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISGLAQNG 290
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 57/249 (22%)
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA---IHGKGNEAIRLLDS 310
+F+ L++MY K L++A +F +M ++NV++WT M + + IH K E + L+
Sbjct: 48 MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLM-- 105
Query: 311 MRDCGVKPNAVTFTSLFAAC--------CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+RD GV+PN T++S+ AC H G+++EGL E + S +
Sbjct: 106 LRD-GVRPNVYTYSSVLRACNGMSDVRMLHCGIIKEGL------------ESDVYVRSAL 152
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALG-----EKVGKILL 415
+D+ + G E+A + + + DAI+W S++ A N DVAL ++ G +
Sbjct: 153 IDVFAKLGEPEDALS-VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAG--FI 209
Query: 416 QLQPEVTFVDVACT------------------SEDFV---ALSNIYASAERWPDVESVRK 454
Q +T V ACT +D + AL ++Y D V
Sbjct: 210 AEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFN 269
Query: 455 QMKVKRVET 463
QMK + V T
Sbjct: 270 QMKERDVIT 278
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/396 (34%), Positives = 217/396 (54%), Gaps = 20/396 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + C+ + L+F +++GL + AL +CA SL L +G Q+H +
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA---SLDHLRMGEQLHALL 366
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ +L+ YA I +FD+M ++ + +++A+++GY Q+ +A++
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV-QNGRAEE- 424
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A ++F+ M V+P TMV ++ S L L+ G C HG + E
Sbjct: 425 ---AFLVFKKM--QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS-- 477
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
I AL+DMY+KCG +D + +F+ M +++++W M G IHG G EA L M + G
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 537
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
P+ VTF L +AC H+GLV EG H F M +G+ P ++HY C+VDLL R G L+EA
Sbjct: 538 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEA 597
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +P++ D +W +LL AC V+ ++ LG+KV +++ +L PE T +FV
Sbjct: 598 YEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT--------GNFVL 649
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIY++A R+ + VR KV+ + PG S ++
Sbjct: 650 LSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIE 685
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 165/391 (42%), Gaps = 67/391 (17%)
Query: 62 VHFVFTHFDPPNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
H +F P++ +N LIR T D + ++ + + + +++T+ FAL +
Sbjct: 76 AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRML-RHRVAPNNYTFPFALKA 134
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
C+ +L+ GR IH H G ++ V+T L+ Y + +F MP R
Sbjct: 135 CS---ALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDL 191
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WNAM+ GY +A+ M + + ++P +T+V +L + +Q G L
Sbjct: 192 VAWNAMLAGYAHHGMY-----HHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246
Query: 236 GACVHGYMEKTFYMPEND--------VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
G VH Y + P + V +GTAL+DMY+KCG L A +F M +N +T
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306
Query: 288 WTAMATGMAIHGKGNEAIRLLDSM-----------------RDC---------------- 314
W+A+ G + + +A L +M R C
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366
Query: 315 ---GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV + SL + AGL+++ + LFD M K V YS +V + G
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-----YSALVSGYVQNGR 421
Query: 372 LEEA---YNFIMGIPIKPDAILWRSLLSACN 399
EEA + + ++PDA SL+ AC+
Sbjct: 422 AEEAFLVFKKMQACNVEPDAATMVSLIPACS 452
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 19/255 (7%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
+ ++ +S +FDQ+P T+N +I Y S S A A + L L+R ML V
Sbjct: 67 HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTA---AADGLHLYRRMLRHR--V 121
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
P + T L S L G +H + + D+F+ TAL+DMY KC CL +A
Sbjct: 122 APNNYTFPFALKACSALADHHCGRAIHRHAIHAGL--QADLFVSTALLDMYVKCACLPDA 179
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACC 331
IF+ M ++++ W AM G A HG + A+ L SM+ ++PNA T +L
Sbjct: 180 AHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLA 239
Query: 332 HAGLVEEG--LH-------LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
G + +G +H L N SK + + + ++D+ + G L A +
Sbjct: 240 QQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 299
Query: 383 PIKPDAILWRSLLSA 397
P + + + W +L+
Sbjct: 300 PAR-NEVTWSALIGG 313
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 165/508 (32%), Positives = 250/508 (49%), Gaps = 59/508 (11%)
Query: 1 MLSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST- 59
M S+ C LL+ T KQIHA I N L + I + ASP+
Sbjct: 17 MSSIRNSPCLHLLQQWQNLTMKQTKQIHAHAIANNLTRFSYISSRILAFFA--ASPRGDF 74
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRC--TPPQ--DSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+ +FTH PN+F +N++I T Q S+ VF ++ + + T+ + S
Sbjct: 75 RYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRP-NSHTFTTLVKS 133
Query: 116 CARFCSLSTLW-----------------------------LGRQIHVHVTKRGFMFNVLV 146
C SL ++ L RQ+ + R NV+
Sbjct: 134 CVTLSSLEQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNR----NVVC 189
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
T+L+ Y S ++ + VFD+MP R+ A+ +AM++GY S ++ + LFR++
Sbjct: 190 WTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSE-----GVQLFREL 244
Query: 207 LVDVSG---VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
G VK +V VL+ + +G E G +H Y+E+ E D+ +GTAL+D
Sbjct: 245 KKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGL--EYDLELGTALIDF 302
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y+KCG + +A +F +M K+V TW+AM G+AI+G A+ L + M G KPN VTF
Sbjct: 303 YAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTF 362
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ AC H L E LF M K+ + P I+HY CIVD+L R+G +++A FI +
Sbjct: 363 VGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMH 422
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
I+PD +W SLL+ C +HG LG+KVGK L++ PE S +V L+N+YA+
Sbjct: 423 IEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFDPE--------HSGRYVLLANMYANM 474
Query: 444 ERWPDVESVRKQMKVKRVETEPGSSILQ 471
+W V VRK MK + V G S ++
Sbjct: 475 GKWEGVSEVRKLMKDRGVVIVYGWSFIE 502
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 203/356 (57%), Gaps = 23/356 (6%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
T VF++ CA+ L T GR+ + + NV+V T L+ Y + I +
Sbjct: 309 ITTVFSI--CAKTGDLDT---GRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHE 362
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+MP R W+ MI GY SQ+ + + +L LF M + KP + T+V VLS
Sbjct: 363 FDRMPRRDVVAWSTMIAGY-SQNGRPHE----SLELFERM--KATNCKPNEVTLVGVLSA 415
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+QLG E G + Y+E +P ++G+AL+DMY+KCG + A +F+RM +K V+
Sbjct: 416 CAQLGSDELGEQIGNYIESQ-TLPLTS-YLGSALIDMYTKCGHVARARSVFNRMEQKVVV 473
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TW +M G+A++G +AI L M G++PN VTF +L AC HAGLV++G+ F+ M
Sbjct: 474 TWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEM 533
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K K V P ++H +CIVDLL ++G L EAY FI + ++P+A++W +LLSAC H DV L
Sbjct: 534 KKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVEL 593
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+ L+ L+P + + +V LSNIYA A W DV +R M+ K ++
Sbjct: 594 AKLAAGKLVALEPNNSSI--------YVLLSNIYADAGLWGDVREIRDLMRSKNLQ 641
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 56/347 (16%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS------------------------- 162
G Q H H RG + +V V T L+ FYA N D+ S
Sbjct: 193 GSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSK 252
Query: 163 ------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
+++FD MP R+SA+WN+MI Y + + AL LF ML + G P
Sbjct: 253 SGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFRE-----ALTLFDQMLRE--GASPN 305
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+ V S+ ++ G L+ G ++ + +V + TAL++MY KC +D A
Sbjct: 306 AITITTVFSICAKTGDLDTGRRARAWIREEDL---QNVIVHTALMEMYVKCRAIDEARHE 362
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F RM ++V+ W+ M G + +G+ +E++ L + M+ KPN VT + +AC G
Sbjct: 363 FDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422
Query: 337 EEGLHLFDNMKSKWGVEPHIKHY-SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
E G + + ++S+ P + S ++D+ + GH+ A + + K + W S++
Sbjct: 423 ELGEQIGNYIESQ--TLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKV-VVTWNSMI 479
Query: 396 SACNVHG----DVALGEK-VGKILLQLQP-EVTFVDV--ACTSEDFV 434
++G +AL K VG +QP EVTFV + ACT V
Sbjct: 480 RGLALNGFAEDAIALYRKMVGD---GIQPNEVTFVALLTACTHAGLV 523
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 200/337 (59%), Gaps = 22/337 (6%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDM 206
+++ YA N ++ +KVFD+MP R+ +WN +I GY K+ F+ L F+ M
Sbjct: 242 NAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGY------VKNGLFSETLESFKRM 295
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
LV+ V P D T+V VLS S+LG L+ G VH Y E Y + ++F+G L+DMY+K
Sbjct: 296 LVE-GHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGY--KGNLFVGNVLIDMYAK 352
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG ++NA+++F+ + K++++W + G+AIHG +A+ + D M+ G +P+ VTF +
Sbjct: 353 CGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGI 412
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+AC H GLV++G F +M + + P I+HY C+VDLLGRAG L++A NFI +PI+P
Sbjct: 413 LSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEP 472
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
DA++W +LL AC ++ +V + E + L++L+P +FV +SNIY R
Sbjct: 473 DAVIWAALLGACRLYKNVEIAELALQRLIELEPN--------NPANFVMVSNIYKDLGRS 524
Query: 447 PDVESVRKQMKVKRVETEPGSSILQ----TTTHYTLD 479
DV ++ M+ PG S+++ Y+LD
Sbjct: 525 EDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLD 561
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 131/302 (43%), Gaps = 56/302 (18%)
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
++ L SC + L QI + G N VA I + K I +K+FD
Sbjct: 15 FITLLRSCKNYERL------HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFD 68
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
++P ++ATWNAM GY Q+ +D +VLF + L ++G+ P T ++
Sbjct: 69 KIPQPNTATWNAMFRGYL-QNGHHRD----TVVLFGE-LNRIAGM-PNCFTFPMIIKSCG 121
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+L + G VH K + +++ F+ T+L+DMYSK GC+++A +F M E+NV+ W
Sbjct: 122 KLEGVREGEEVHCCATKHGF--KSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVW 179
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
TA+ G + G RL D + + V ++ L + + + LFD M +
Sbjct: 180 TAIINGYILCGDVVSGRRLF----DLAPERDVVMWSVLISGYIESKNMAAARELFDKMPN 235
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+ D + W ++L+ V+G+V + E
Sbjct: 236 R-------------------------------------DTMSWNAMLNGYAVNGEVEMFE 258
Query: 409 KV 410
KV
Sbjct: 259 KV 260
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 104/472 (22%), Positives = 184/472 (38%), Gaps = 108/472 (22%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--- 71
L++ + QI AQ++T+ L+ A C++ K +H FD
Sbjct: 19 LRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSR------FKRIHHARKLFDKIPQ 72
Query: 72 PNLFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PN +N + R +D+V++F +++ + FT+ + SC + L +
Sbjct: 73 PNTATWNAMFRGYLQNGHHRDTVVLFGE-LNRIAGMPNCFTFPMIIKSCGK---LEGVRE 128
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G ++H TK GF N VAT+LI Y+ + KVF +M R+ W A+INGY
Sbjct: 129 GEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGY-- 186
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+L D+ VSG + D
Sbjct: 187 -------------ILCGDV---VSGRRLFDLA---------------------------- 202
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
PE DV + + L+ Y + + A +F +M ++ ++W AM G A++G+ ++
Sbjct: 203 --PERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKV 260
Query: 308 LDSMRDCG--------------------------------VKPNAVTFTSLFAACCHAGL 335
D M + V PN T ++ +AC G
Sbjct: 261 FDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGA 320
Query: 336 VEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
++ G +H++ G + ++ + ++D+ + G +E A + + D I W +
Sbjct: 321 LDMGKWVHVY---AESIGYKGNLFVGNVLIDMYAKCGVIENAV-VVFNCLDRKDIISWNT 376
Query: 394 LLSACNVHGDV--ALGEKVGKILLQLQPE-VTFVDV--ACTSEDFVALSNIY 440
+++ +HG ALG +P+ VTFV + ACT V +Y
Sbjct: 377 IINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLY 428
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 16/232 (6%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF N+F +N LI + +++ F + +G + +DFT V L +C+R
Sbjct: 260 VFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLG 319
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L +G+ +HV+ G+ N+ V LI YA I + VF+ + + +WN
Sbjct: 320 ALD---MGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNT 376
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+ING A +AL +F M G +P T V +LS + +GL++ G
Sbjct: 377 IINGLAIHGH-----APDALGMFDRM--KSEGEEPDGVTFVGILSACTHMGLVKDGFLYF 429
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAM 291
M + + G +VD+ + G LD AL +M E + + W A+
Sbjct: 430 KSMVDHYSIVPQIEHYG-CMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAAL 480
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 155/508 (30%), Positives = 252/508 (49%), Gaps = 88/508 (17%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
P H LL+ + P ++Q+H+ +IT+ L P + L C
Sbjct: 42 PQHLLSLLLRDPSQRQP--LQQVHSHIITSGLFYNPFHNTLT---C-------------- 82
Query: 65 VFTHFDPPNLFLFNTLIRCTP----PQDSVLVFAYWVS-KGLLTF---DDFTYVFALGSC 116
L LFN +IRC P +++ F Y LT+ D F++ F C
Sbjct: 83 ---------LLLFNNVIRCYSFGPYPHEALHFFTYTQHCHTFLTYPSLDTFSFAFL---C 130
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK------------------ 158
+ + G Q+H V K GF F+V V T L+ Y+S+
Sbjct: 131 HASANPNYTHFGTQLHALVFKVGFQFHVYVKTGLLQMYSSSGLLVEAAQVFYEMQHRNLV 190
Query: 159 -------------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
++ VF+QMP RS +W +I+GY +++ K AL LFR
Sbjct: 191 SWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIK-----ALTLFRK 245
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M ++V G++PT+ T++ + + +G ++ VH Y+EK + DV I AL+D+Y+
Sbjct: 246 M-IEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFN-AFDVRITNALLDLYA 303
Query: 266 KCGCLDNALLIFSRM--REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
KCGC+ + F + + +N+++WT+ +G A++G G EA+ +SM G++PN VTF
Sbjct: 304 KCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPNHVTF 363
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ +AC H GLVEEG++ F M W + P IKHY C++D+LGRAG LEEA + +P
Sbjct: 364 LGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAEKVALQVP 423
Query: 384 IK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
+ +A++WR+LL AC+VH +V +G++V +L+++ D+V +SNI
Sbjct: 424 HEVANAVMWRTLLGACSVHNNVEIGQRVTNKILEME--------RGHGGDYVLMSNILVG 475
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSIL 470
R+ D E +R+ + + PG S +
Sbjct: 476 VGRFKDAERLREVIDKRIAFKLPGYSFV 503
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 152/448 (33%), Positives = 231/448 (51%), Gaps = 51/448 (11%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF + N+ +N LI C P +++ F G D+ T + +CA
Sbjct: 213 VFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKP-DEVTLASVVSACA--- 268
Query: 121 SLSTLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+L+ G QIH V K F ++++ L+ YA ++ + VFD+MP+R++ +
Sbjct: 269 TLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSET 328
Query: 180 AMINGYCSQSK-----------KAKD-CAFNALV--------------LFRDMLVDVSGV 213
M++GY + K KD ++NAL+ LFR ++ V
Sbjct: 329 TMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR--MLKRESV 386
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGC 269
PT T +L+ S+ L LE G H ++ K + E D+F+G +L+DMY KCG
Sbjct: 387 CPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGS 446
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ L +F M EK+ ++W M G A +G G EA+ L M + G KP+ VT A
Sbjct: 447 VEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCA 506
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C HAGLVEEG F +M + G+ P HY+C+VDLLGRAG LEEA + I +P +PDA+
Sbjct: 507 CSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAV 566
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W SLLSAC VH ++ LG+ V + + ++ P +S +V L+N+Y+ RW D
Sbjct: 567 VWSSLLSACKVHRNITLGKYVAEKIFEIDP--------TSSGPYVLLANMYSELGRWGDA 618
Query: 450 ESVRKQMKVKRVETEPGSSI--LQTTTH 475
SVRK M+ + V +PG S +Q+ H
Sbjct: 619 VSVRKLMRRRGVVKQPGCSWIDIQSNVH 646
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 155/343 (45%), Gaps = 50/343 (14%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+D+++ L +C+R L L LG QIH ++K + +V + + LI FY+ +
Sbjct: 152 FVLNDYSFGSGLSACSR---LKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVG 208
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
++VFD M ++ +WN +I Y + A AL F M G KP + T+
Sbjct: 209 CARRVFDGMEEKNVVSWNCLITCY-----EQNGPAIEALEAFGRMT--ELGFKPDEVTLA 261
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM- 280
V+S + L + G +H + K+ ND+ +G ALVDMY+KCG ++ A +F RM
Sbjct: 262 SVVSACATLAAFKEGVQIHARVVKSDKF-RNDLILGNALVDMYAKCGRVNEARCVFDRMP 320
Query: 281 ------------------------------REKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
++K++++W A+ G +G+ EA+ L
Sbjct: 321 VRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRM 380
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-----KSKWGVEPHIKHYSCIVDL 365
++ V P TF +L A + +E G ++ + + G EP I + ++D+
Sbjct: 381 LKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDM 440
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLL--SACNVHGDVAL 406
+ G +EE + ++ D + W +++ A N +G AL
Sbjct: 441 YMKCGSVEEGLRVFENM-VEKDHVSWNTMIIGYAQNGYGMEAL 482
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 38/287 (13%)
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN----- 183
R +H + + F V + LI Y + +KVFD+M R+ ++N++I+
Sbjct: 44 RSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRW 103
Query: 184 GYCSQSK-------KAKDCAFNALV------------------LFRDMLVDVSGVKPTDT 218
G+ +S + C++N+++ + RD V D
Sbjct: 104 GFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFV------LNDY 157
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
+ LS S+L L+ GA +HG + K+ Y DVF+G+ L+D YSKCG + A +F
Sbjct: 158 SFGSGLSACSRLKDLKLGAQIHGLISKSKYSL--DVFMGSGLIDFYSKCGLVGCARRVFD 215
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M EKNV++W + T +G EA+ M + G KP+ VT S+ +AC +E
Sbjct: 216 GMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKE 275
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
G+ + + + + +VD+ + G + EA +P++
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 124/332 (37%), Positives = 195/332 (58%), Gaps = 19/332 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ ++ Y N D + + +FDQMPM++ TW+ MI GY + K AL L
Sbjct: 290 NVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLK-----ALEL 344
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG-ACVHGYMEKTFYMPENDVFIGTALV 261
F +KP +T ++ ++S SQLG+++ + +H Y+ + +D+ + T+L+
Sbjct: 345 FERF--KEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLL---SDLRVFTSLI 399
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMY+KCG ++ AL +F K++L ++ M +A HG G +AI L D M+ +KP++V
Sbjct: 400 DMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSV 459
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + AC H GLV+EG F M ++G++P KHY+C+VDLLGR G LEEAYN I
Sbjct: 460 TFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRN 519
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI P +++W +LL+AC VH +V L E L +++P+ S +++ LSNIYA
Sbjct: 520 MPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPD--------NSGNYILLSNIYA 571
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+A RW V VR +++ RV GSS ++ +
Sbjct: 572 AAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 603
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 201/363 (55%), Gaps = 39/363 (10%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY--CSQ 188
IH +V KRG N + LI Y+ DI + K++FD M R +WN +I Y C +
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGR 400
Query: 189 SKKAKDCAFNALVLFRDM------------LVDVSGV--KPTDTTMVCVLSVSSQLGLLE 234
S +AL+L +M D V KP T++ VL + L L
Sbjct: 401 SS-------DALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALA 453
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +H Y + + V +G+ALVDMY+KCGCL+ A +F +M +NV+TW +
Sbjct: 454 KGKEIHAYAIRNLLASQ--VTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMA 511
Query: 295 MAIHGKGNEAIRLLDSMRDCG-----VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+HGKG E++ L + M G VKP VTF +LFA+C H+G+V+EGL LF MK++
Sbjct: 512 YGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNE 571
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVALGE 408
G+EP HY+CIVDL+GRAG +EEAY + +P D + W SLL AC ++ ++ +GE
Sbjct: 572 HGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGE 631
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+ LLQLQP+V + +V LSNIY+SA W ++R++MK V+ EPG S
Sbjct: 632 IAAENLLQLQPDV--------ASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCS 683
Query: 469 ILQ 471
++
Sbjct: 684 WIE 686
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 176/396 (44%), Gaps = 31/396 (7%)
Query: 15 LKAITTPSHI---KQIHAQLIT---NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
LKA+ + KQIHA + + S + L+ +Y + K VF
Sbjct: 17 LKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK----VFDR 72
Query: 69 FDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
+ +N++I R + ++ F + +G FT V +C+
Sbjct: 73 ITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEP-SSFTLVSMALACSNLRKRDG 131
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
LWLG+QIH ++G + L+ YA + K + R TWN+MI+
Sbjct: 132 LWLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISS 190
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
+ SQ+++ AL+ R M+++ GVKP T VL S L LL G +H Y
Sbjct: 191 F-SQNERF----MEALMFLRLMVLE--GVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+T + EN F+G+ALVDMY CG +++ L+F + ++ + W AM G A +A
Sbjct: 244 RTDDVIENS-FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKA 302
Query: 305 IRLLDSMR-DCGVKPNAVTFTSLFAAC--CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+ L M G+ NA T +S+ A C +EG+H + K G+E + +
Sbjct: 303 LMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGY---VIKRGLETNRYLQNA 359
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
++D+ R G ++ + + + D + W +++++
Sbjct: 360 LIDMYSRMGDIKTSKRIFDSMEDR-DIVSWNTIITS 394
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF--MFNVLVATTLIHFYASNKDISS 162
D+F + L + A + L+LG+QIH HV K G+ +V + TL++ Y +
Sbjct: 9 DNFAFPAVLKAVA---GIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGD 65
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
KVFD++ R +WN++I+ C + A+ FR ML++ G +P+ T+V
Sbjct: 66 AYKVFDRITERDQVSWNSIISALCRFEEWEV-----AIKAFRLMLME--GFEPSSFTLVS 118
Query: 223 VLSVSSQL---GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ S L L G +HG F F AL+ MY+K G LD+A +
Sbjct: 119 MALACSNLRKRDGLWLGKQIHGC---CFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVL 175
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+++++TW +M + + + + EA+ L M GVKP+ VTF S+ AC H L+ G
Sbjct: 176 FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 152/354 (42%), Gaps = 43/354 (12%)
Query: 22 SHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S + IH +I L++ L LI +Y S +I F + ++ +NT+
Sbjct: 336 SRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRI----FDSMEDRDIVSWNTI 391
Query: 81 IR----CTPPQDSVLVF-------------AYWVSKGLLTF--DDFTYVFALGSCARFCS 121
I C D++L+ + + + F + T + L CA S
Sbjct: 392 ITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCA---S 448
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
LS L G++IH + + V V + L+ YA ++ ++VFDQMP+R+ TWN +
Sbjct: 449 LSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVI 508
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSG---VKPTDTTMVCVLSVSSQLGLLEFG-A 237
I Y K + +L LF DM+ + + VKPT+ T + + + S G+++ G +
Sbjct: 509 IMAYGMHGKGKE-----SLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLS 563
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGM 295
H + P D + +VD+ + G ++ A + + M V W+++
Sbjct: 564 LFHKMKNEHGIEPAPDHY--ACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGAC 621
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGLVEEGLHLFDNMKS 348
I+ N I + + ++P+ + L + AGL ++ ++L MK+
Sbjct: 622 RIY--HNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKA 673
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
SG P + VL + + L G +H ++ K Y + V I LV+MY KCG L
Sbjct: 4 SGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGL 63
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+A +F R+ E++ ++W ++ + + + AI+ M G +P++ T S+ AC
Sbjct: 64 GDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALAC 123
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYS--CIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
+ +GL L + + H + +S ++ + + G L++A + ++ + D
Sbjct: 124 SNL-RKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR-DL 181
Query: 389 ILWRSLLSAC--NVHGDVALGEKVGKILLQLQPE-VTFVDV--ACTSEDFVALS-NIYAS 442
+ W S++S+ N AL +L ++P+ VTF V AC+ D + I+A
Sbjct: 182 VTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAY 241
Query: 443 AERWPDV 449
A R DV
Sbjct: 242 ALRTDDV 248
>gi|225425734|ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Vitis vinifera]
Length = 597
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 151/418 (36%), Positives = 227/418 (54%), Gaps = 27/418 (6%)
Query: 63 HFVFTHFDPP-NLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
H +F P +L +NTL+ + P +F KGL F T L CA
Sbjct: 182 HQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEMCRKGL-KFSTTTISSVL--CA 238
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
L + G +H H K GF ++ VAT LI YA+ I G K+F Q+P +
Sbjct: 239 -VGDLGNILGGVSLHGHCIKVGFCSDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVL 297
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN +I+GY ++S ++ ++ R+ VKP +T+V +LS + G G
Sbjct: 298 WNCLIDGY-AKSDLLQESLSLLQLMKREQ------VKPNSSTLVGLLSACAAAGASSVGL 350
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
C+ Y+E+ D +GTALVDMY KCG L+ A+ +F RM K+V +WTAM +G +
Sbjct: 351 CISNYVEEE--QIALDAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGV 408
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG+ AI + M G +PN VTF ++ AC H G+V EG+ + M ++G P ++
Sbjct: 409 HGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVE 468
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HY C++DLLGRAG LEEA+N I +PI+ DA WR+LL+AC V+G+V LGE V ++LL++
Sbjct: 469 HYGCMIDLLGRAGLLEEAHNLIKSLPIEGDATGWRALLAACRVYGNVDLGECVKRVLLEI 528
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
E D + LS+ YA A R PD + +++K +++ E G S+++ +H
Sbjct: 529 FDE--------HPTDSILLSSTYAIAGRLPDYTRM-QEIKEEKMMKEAGCSVIEMDSH 577
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 184/397 (46%), Gaps = 33/397 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L++ T S I Q+H ++ L + P L +L + S Q T +F PNL
Sbjct: 38 LESCTQTSEICQVHGSMVKTGLVNVPF--TLSKLLAS---SIQDTDYAASIFNQIPSPNL 92
Query: 75 FLFNTLIRCTP----PQDSVLVFAYWVSKGL----LTFDDFTYVFALGSCARFCSLSTLW 126
F+FNT++R P+ + +VF KGL + D F+++ L +CAR + T
Sbjct: 93 FMFNTMLRGYSISHHPKQAFVVF-----KGLRAQQMILDQFSFIPTLKACARELAYET-- 145
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS-ATWNAMINGY 185
G+ IH V + G V L+HFY I ++FD++P + +WN ++ GY
Sbjct: 146 -GQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGY 204
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
LF +M G+K + TT+ VL LG + G +HG+ K
Sbjct: 205 LQVPHPTM-----VTCLFGEMC--RKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIK 257
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
+ +D+ + TAL+DMY+ G +D IF ++ +K+V+ W + G A E++
Sbjct: 258 VGFC--SDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESL 315
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
LL M+ VKPN+ T L +AC AG GL N + + + +VD+
Sbjct: 316 SLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGL-CISNYVEEEQIALDAVLGTALVDM 374
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G LE+A + + IK D W +++S VHG
Sbjct: 375 YCKCGFLEKAIDVFERMEIK-DVKSWTAMISGYGVHG 410
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 208/365 (56%), Gaps = 23/365 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D + V A+ SC+R L L LG+ +H + K N + +LI Y +
Sbjct: 425 DITSLVSAISSCSR---LGRLRLGQSVHCYSIKCLLDENS-ITNSLIGMYGRCGNFELAC 480
Query: 165 KVFDQMPMRSSA-TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
K+F +R TWNA+I+ Y S ++ D AL L+ ML + VKP +T++ V
Sbjct: 481 KIFAVAKLRRDVVTWNALISSY-SHVGRSND----ALSLYGQMLTE--DVKPNSSTLITV 533
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S + L LE G +H Y++ E+DV I TALVDMY+KCG L A IF M ++
Sbjct: 534 ISACANLAALEHGELLHSYVKNMGL--ESDVSISTALVDMYTKCGQLGTARGIFDSMLQR 591
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+TW M +G +HG+ N+A++L M +KPN++TF ++ +ACCHAGLV+EG LF
Sbjct: 592 DVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLF 651
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
M + +EP++KHY+C+VDLLG++G L+EA + ++ +PIKPD +W +LLSAC VH +
Sbjct: 652 IRM-GGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDN 710
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+G +V K P ++ +SN Y SAE+W ++E +R MK VE
Sbjct: 711 FEMGLRVAKKAFSSDPR--------NDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEK 762
Query: 464 EPGSS 468
G S
Sbjct: 763 GVGWS 767
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 26/285 (9%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ H + +R F +VL+A +LI Y + + VF + R +W+ M+ GYC
Sbjct: 341 GKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCK 400
Query: 188 QSKKAKDCAFNALVLFRDM--------LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
K L L+R M L D+ T++V +S S+LG L G V
Sbjct: 401 AGLDVK-----CLELYRQMQCRDHDEFLCDI-------TSLVSAISSCSRLGRLRLGQSV 448
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
H Y K + EN I +L+ MY +CG + A IF+ + ++V+TW A+ + +
Sbjct: 449 HCYSIKCL-LDENS--ITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHV 505
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ N+A+ L M VKPN+ T ++ +AC + +E G L +K+ G+E +
Sbjct: 506 GRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNM-GLESDVSI 564
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ +VD+ + G L A I ++ D + W ++S +HG+
Sbjct: 565 STALVDMYTKCGQLGTARG-IFDSMLQRDVVTWNVMISGYGMHGE 608
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 19/321 (5%)
Query: 26 QIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR-- 82
++HA T+ L S P +A +L+ Y + +T F+ P+ FL+N+L+R
Sbjct: 33 RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFAT----LAFSASPCPDTFLWNSLLRSH 88
Query: 83 -CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
C DS L + FT A + L+ L +G +H + K G +
Sbjct: 89 HCASDFDSALSAHRRMRASGARPSRFTAPLAA---SAAAELAALPVGTSVHSYSVKFGLL 145
Query: 142 F---NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
+V V+++L++ YA + K+FD+M R W A+++G + K +
Sbjct: 146 AGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYL 205
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
++ L SG +P TM L LG L G C+HGY K + + +
Sbjct: 206 VQMI---RLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGI--RDCALVVS 260
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL MYSKC ++A ++F + EK+V++WT + G EA+ L M G++P
Sbjct: 261 ALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQP 320
Query: 319 NAVTFTSLFAACCHAGLVEEG 339
+ V + + + + V G
Sbjct: 321 DEVLVSCVLSGLGSSANVNRG 341
>gi|359491319|ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74400-like [Vitis vinifera]
Length = 482
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 236/458 (51%), Gaps = 54/458 (11%)
Query: 39 PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF-LFNTLIRCTPPQDSVLVFAYWV 97
P L ++ +L+ T P++ + TH PP ++ + +L F +
Sbjct: 8 PSLGRRVTKLFATNN-QPKA-----HLHTHLKPPKSNQTLKRYLQSSNTSKVLLFFRILL 61
Query: 98 SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157
K + D F+ +FAL +C SL G+Q+H V GF + + T+LI Y++
Sbjct: 62 RKNPSSIDSFSLMFALKACTLKSSLVE---GKQMHALVINFGFEPIIFLQTSLISMYSAT 118
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+++ +FD++P ++ +W ++I+ Y + K AL LFR M +D V+P
Sbjct: 119 GNVADAHNMFDEIPSKNLISWTSVISAYVDNQRPNK-----ALQLFRQMQMD--DVQPDI 171
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T+ LS + LG L+ G +H Y+ + D+ + +L++MYSKCG + A +F
Sbjct: 172 VTVTVALSACADLGALDMGEWIHAYIRHRGL--DTDLCLNNSLINMYSKCGEIGTARRLF 229
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG----------------VKPNAV 321
++K+V TWT+M G A+HG+ EA++L M++ V PN V
Sbjct: 230 DGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEHESSLVLPNDV 289
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + AC HAGLVEEG F +MK + + P I H+ C+VDLL RAG L EAY FI+
Sbjct: 290 TFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILK 349
Query: 382 IPIKPDAILWRSLLSACNVHGD--------VALGEKVGKILLQLQPEVTFVDVACTSEDF 433
+P++P+A++WR+LL AC++ GD + + + + LL+L+P D
Sbjct: 350 MPVRPNAVVWRTLLGACSLQGDSNGNGNSNIKIYSEARRQLLELEPSHV--------GDN 401
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V +SN+YA+ W VR Q+K +R +PG S ++
Sbjct: 402 VIMSNLYAAKGMWDKKMLVRNQIKQRR---DPGCSSIE 436
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 148/495 (29%), Positives = 247/495 (49%), Gaps = 58/495 (11%)
Query: 15 LKAITTPSHI---KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ +TP + ++IHA+++ N S + A LI +Y +S ++ + VF
Sbjct: 214 ISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEARE----VFDKMK 269
Query: 71 PPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF-----TYVFALGSCARFCSLSTL 125
++ +N +I C K L + F T+V LG+C+ S+ L
Sbjct: 270 KRDMVSWNVMIGCYVQNGDFHEALELYQK--LDMEGFKRTKATFVSILGACS---SVKAL 324
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI--- 182
GR +H H+ +RG V VAT L++ YA + +KVF+ M R + W+ +I
Sbjct: 325 AQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAY 384
Query: 183 --NGYCSQSKKAKD------------------------CAFNALVLFRDMLVDVSGVKPT 216
NGY ++KA+ CA A+ +FR+M +G+KP
Sbjct: 385 ASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM-TGAAGLKPD 443
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T + VL + LG L +H + ++ E++V + L++MY++CG L+ A +
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQISESEL--ESNVVVTNTLINMYARCGSLEEAERL 501
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F+ +EK V++WTAM + +G+ EA+ L M GVKP+ VT+TS+ C H G +
Sbjct: 502 FAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSL 561
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
E+G F +M G+ P H++ +VDLLGR+G L +A + +P +PD + W + L+
Sbjct: 562 EQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLT 621
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC +HG + LGE + + +L P T ++A+SNIYA+ W V SVRK+M
Sbjct: 622 ACRIHGKLELGEAAAERVYELDPSST--------APYIAMSNIYAAHGMWEKVASVRKKM 673
Query: 457 KVKRVETEPGSSILQ 471
+ + ++ PG S ++
Sbjct: 674 EERGLKKLPGLSFIE 688
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 157/331 (47%), Gaps = 21/331 (6%)
Query: 95 YWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIH 152
YW +GL T D T+V LG+C S+L GR+IH V G +A L+
Sbjct: 98 YWRMNLQGLGT-DHVTFVSVLGAC------SSLAQGREIHNRVFYSGLDSFQSLANALVT 150
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
YA + K++F + R +WNA+I + SQS AL +F++M D
Sbjct: 151 MYARFGSVGDAKRMFQSLQTRDETSWNAVILAH-SQSGDWS----GALRIFKEMKCD--- 202
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
+KP TT + V+S S +L G +H + + ++D+ + TAL++MY KCG
Sbjct: 203 MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF--DSDLVVATALINMYGKCGSSHE 260
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F +M+++++++W M +G +EA+ L + G K TF S+ AC
Sbjct: 261 AREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSS 320
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
+ +G + ++ + G++ + + +V++ + G LEEA + + DA+ W
Sbjct: 321 VKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWS 378
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
+L+ A +G K K+ +L T
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRLGSRDTI 409
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 24/303 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T++ L SC+ S + GR +H + F + +V LI Y + +
Sbjct: 6 DNVTFLTVLCSCS---SCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62
Query: 165 KVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
VF+ M R+ +WNAMI Y + ALVL+ M ++ G+ T V
Sbjct: 63 SVFESMDWRQRNVVSWNAMIAAYAQNGHSTE-----ALVLYWRM--NLQGLGTDHVTFVS 115
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF--IGTALVDMYSKCGCLDNALLIFSRM 280
VL S L G +H + FY D F + ALV MY++ G + +A +F +
Sbjct: 116 VLGACSSLAQ---GREIH---NRVFY-SGLDSFQSLANALVTMYARFGSVGDAKRMFQSL 168
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+ ++ +W A+ + G + A+R+ M+ C +KPN+ T+ ++ + ++ EG
Sbjct: 169 QTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGR 227
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ + + G + + + ++++ G+ G EA + K D + W ++
Sbjct: 228 KIHAEIVAN-GFDSDLVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVQ 285
Query: 401 HGD 403
+GD
Sbjct: 286 NGD 288
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 9/192 (4%)
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+P + T + VL S G + G +H + + + E D +G AL+ MY KC L +A
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRF--ERDTMVGNALISMYGKCDSLVDA 61
Query: 274 LLIFSRM--REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+F M R++NV++W AM A +G EA+ L M G+ + VTF S+ AC
Sbjct: 62 RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ +G + + + G++ + +V + R G + +A + + D W
Sbjct: 122 S---LAQGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSW 176
Query: 392 RSLLSACNVHGD 403
+++ A + GD
Sbjct: 177 NAVILAHSQSGD 188
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 212/370 (57%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H + GF N+ + +L+ Y+ ++ +
Sbjct: 265 DESTMVTVVSACAQSGSIE---LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+ + + +WN +I GY + + AL+LF++ML SG +P D TM+ +L
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGERPNDVTMLSIL 374
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ + K+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ + A + MR G++P+ +TF L +AC +G+++ G H+F
Sbjct: 435 LSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFR 494
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC + G+V
Sbjct: 495 TMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNV 554
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE + C +V LSNIYA+A RW +V +R + K ++
Sbjct: 555 ELGESFAQNLIKIEPE----NPGC----YVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 606
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 607 PGCSSIEIDS 616
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 37/361 (10%)
Query: 50 CTKKASPQSTKIVHFVFTHFDPPNLFLFN-----TLIRCTPPQDSVLVFAYWVSKGLLTF 104
C+ P S+ HF+ + DPP L N L C Q L+ A + GL
Sbjct: 5 CSPLTVPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNT 64
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ +AL C +S + G + V + N+L+ T+ +A + D S
Sbjct: 65 N-----YALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAL 119
Query: 165 KVFDQMP----MRSSATWNAMINGYCSQSKKAKDCA---FNALVLFRDMLVDVSGVKPTD 217
K++ M + +S T+ ++ C++SK K+ + L L D+ + V
Sbjct: 120 KLYVCMISLGLLPNSYTFPFLLKS-CAKSKAFKEGQQIHGHVLKLGYDLDLFVH------ 172
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLI 276
++SV Q G LE K F P DV TAL+ Y+ G +++A +
Sbjct: 173 ---TSLISVYVQNGRLEDA-------RKVFDRSPHRDVVSYTALIKGYASRGYIESAQKL 222
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F + K+V++W AM +G A G EA+ L M ++P+ T ++ +AC +G +
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSI 282
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
E G + + G ++K + ++DL + G LE A G+ K D I W +L+
Sbjct: 283 ELGRQVHSWIDDH-GFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK-DVISWNTLIG 340
Query: 397 A 397
Sbjct: 341 G 341
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 145/441 (32%), Positives = 225/441 (51%), Gaps = 58/441 (13%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L + T+I R ++++++ +S G +D V + C R
Sbjct: 286 VFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEP-NDVMMVDLISGCGRTM 344
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS------------------------ 156
+++ G+Q+ V K GF + +T+IH YA+
Sbjct: 345 AMTE---GQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNA 401
Query: 157 -------NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
N+ I ++F++MP R +W+ MI+GY + AL LF M+
Sbjct: 402 LIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNL-----ALELFHKMVA- 455
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
SG+KP + TMV VLS + G L+ G H Y+ ++ + A++DMY+KCG
Sbjct: 456 -SGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDN--LSAAIIDMYAKCGS 512
Query: 270 LDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
++NAL +F +REK V W A+ G+A+HG N ++++ + +K NA+TF +
Sbjct: 513 INNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVL 572
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
ACCH GLVE G F +MKS+ ++P IKHY C+VDLLGRAG LEEA I +P+K D
Sbjct: 573 TACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKAD 632
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
++W +LL+AC HG+V +GE+ + L +L+P V LSN+YA A +W
Sbjct: 633 VVIWGTLLAACRTHGNVDVGERAAENLARLEPS--------HGASRVLLSNMYADAGKWE 684
Query: 448 DVESVRKQMKVKRVETEPGSS 468
D VR+ M+ R++ PG S
Sbjct: 685 DAFLVRRAMQSHRMQRLPGYS 705
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 140/349 (40%), Gaps = 64/349 (18%)
Query: 107 FTYVFALGSCARFCSLSTLWL--GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
F Y L S +FCS L+L G+QIH V+K G N + +LI+ Y + K
Sbjct: 63 FNYELVLVSALKFCS-DHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAK 121
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSK--------------------------KAKDCAFN 198
+FD P ++N MI+GY + +C
Sbjct: 122 SIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQ 181
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---------- 248
A+ LF+ M GV P + T+ ++S S G + +HG + K +
Sbjct: 182 AVELFKQM--RNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNL 239
Query: 249 -------------------MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
MPE ++ +++ YSK G +D+A ++F R+ K+++TW
Sbjct: 240 LRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWG 299
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+ G + NEA+ + SM G +PN V L + C + EG L + K
Sbjct: 300 TIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAV-VK 358
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEA-YNFIMGIPIKPDAILWRSLLSA 397
G + + S I+ L G + EA F +G K + W +L++
Sbjct: 359 MGFDCYDFIQSTIIHLYAACGRINEACLQFRIG--SKENVASWNALIAG 405
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 138/345 (40%), Gaps = 65/345 (18%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
+W R +H V K F VLV+T L+ Y + + +FD+MP ++ +WN M+NG
Sbjct: 214 IWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNG 273
Query: 185 YCS-----------QSKKAKDCAF---------------NALVLFRDMLVDVSGVKPTDT 218
Y + KD AL+++R M+ +G +P D
Sbjct: 274 YSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMIS--AGWEPNDV 331
Query: 219 TMVCVLS-VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
MV ++S + + E + ++ F + FI + ++ +Y+ CG ++ A L F
Sbjct: 332 MMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYD---FIQSTIIHLYAACGRINEACLQF 388
Query: 278 SRMREKNVLTWTA-------------------------------MATGMAIHGKGNEAIR 306
++NV +W A M +G + + N A+
Sbjct: 389 RIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALE 448
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M G+KPN VT S+ +A +G ++EG + + + + + I+D+
Sbjct: 449 LFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNN-SITVSDNLSAAIIDMY 507
Query: 367 GRAGHLEEAYNFIMGIPIKPDAIL-WRSLLSACNVHGDVALGEKV 410
+ G + A I K + W +++ VHG L K+
Sbjct: 508 AKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKI 552
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 194/354 (54%), Gaps = 39/354 (11%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------------KAKDC 195
++I Y DI+S + +FD P++ +WNA+I+GYC + A++
Sbjct: 111 NSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNS 170
Query: 196 AF---------------NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
A+ +F+ M + VKPT+ TMV +LS + LG L+ G +H
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSE--NVKPTEVTMVSLLSACAHLGALDMGEWIH 228
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+ + DV +G AL+DMY KCG L+ A+ +F + KN+ W ++ G+ ++G+
Sbjct: 229 GYIRTKRL--KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGR 286
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EAI M G+KP+ VTF + + C H+GL+ G F M +G+EP ++HY
Sbjct: 287 GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYG 346
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
C+VDLLGRAG+L+EA I +P+KP++++ SLL AC +H D LGE+V + LL+L P
Sbjct: 347 CMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDP- 405
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
C ++V LSN+YAS RW DV + RK M + V PG S ++
Sbjct: 406 -------CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNN 452
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 56/347 (16%)
Query: 118 RFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
R C++S LG H + K GF +++++ T L+ FYA D+ K+VF MP R
Sbjct: 18 RSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVV 77
Query: 177 TWNAMIN-----GYCSQSKKAKD-------CAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
NAMI+ GY +++ D C++N+++ L D++ +
Sbjct: 78 ANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSAR---------- 127
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REK 283
L F P DV A++D Y K L A +F M +
Sbjct: 128 --------LMFDC-----------NPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSAR 168
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
N +TW M + G+ AI + M+ VKP VT SL +AC H G ++ G +
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+++K ++ + + ++D+ + G LE A + G+ + + W S++ ++G
Sbjct: 229 GYIRTKR-LKIDVVLGNALIDMYCKCGALEAAIDVFHGLS-RKNIFCWNSIIVGLGMNGR 286
Query: 404 VALGEKVGKILLQLQPE------VTFVDV--ACTSEDFVALSNIYAS 442
GE+ + ++ E VTFV + C+ ++ Y S
Sbjct: 287 ---GEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFS 330
>gi|356574307|ref|XP_003555290.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g43790-like [Glycine max]
Length = 516
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 234/470 (49%), Gaps = 81/470 (17%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
L KL+ + +KQ+HAQ++T L + + +K AS + I F H
Sbjct: 7 LQKLQKCHNLNTLKQVHAQMLTTGLSLQTYFLSHLLNTSSKFASTYALTI----FNHIPS 62
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFD-----DFTYVFALGSCARFCSLSTLW 126
P LFL+NTLI + A + +LT + FT+ +CA S W
Sbjct: 63 PTLFLYNTLISSLTHHSDQIHLALSLYNHILTHNTLQPNSFTFPSLFKACA-----SHPW 117
Query: 127 L--GRQIHVHVTKRGFM---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L G +H HV K F+ ++ V +L++FYA + + +F+Q+ ATWN M
Sbjct: 118 LQHGPPLHAHVLK--FLQPPYDPFVQNSLLNFYAKYGKLXVSRYLFNQISEPDLATWNTM 175
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+ +S +KP + T V ++S S LG L G
Sbjct: 176 L---------------------------LSQIKPNEVTPVALISACSNLGALSQG----- 203
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
DMYSKCG L+ A +F + +++ + AM G A+HG G
Sbjct: 204 --------------------DMYSKCGYLNLACQLFDVLSDRDTFCYNAMIGGFAVHGHG 243
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
N+A+ + M+ G+ P+ T AC H GLVEEGL +F++MK G+EP ++HY C
Sbjct: 244 NQALEMYRKMKLEGLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGIHGMEPKLEHYRC 303
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
++DLLGRAG L++A + +P+KP+AILWRSLL A +HG++ +GE K L++L+PE
Sbjct: 304 LIDLLGRAGRLKDAEERLHDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPE- 362
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
T ++V LSN+YAS RW DV+ VR MK + V+ PG S+++
Sbjct: 363 -------TRGNYVLLSNMYASIARWNDVKRVRMLMKDRGVDKLPGFSLVE 405
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 245/463 (52%), Gaps = 41/463 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKAS-PQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
++ HA+ + L P +A+ + C A P S +F D P F +NTL+R
Sbjct: 48 RKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNTLMRG 107
Query: 83 --------CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
P ++ +F V G+ D +T+ F +CA+ L L GRQ+ H
Sbjct: 108 YVAGGGGGGRDPAAALRLFVDMVDDGVEP-DSYTFPFVFKACAQ---LGALQEGRQLQGH 163
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAMINGYCSQSKKA 192
+ K GF + +LI FY + ++ F+QM +++A+W+A++ Y +++ +
Sbjct: 164 LVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAY-TRAGRW 222
Query: 193 KDC--AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH-GYMEKTFYM 249
+C +F A+V +G +P +++MV LS + LG + G +H + T +
Sbjct: 223 AECVESFGAMVR--------AGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARL 274
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ F+ T+LVDMY+KCGC++NA +F M +KN T++AM +G+A+HG G +A+ + D
Sbjct: 275 ---NTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFD 331
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+M G +P+A + + AC AGL+EEGL FD M+ + + P+ +HY C+VDL+ RA
Sbjct: 332 AMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARA 391
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G L++A I +P P WRSLL+AC +HG++ L E+ + L +L A
Sbjct: 392 GRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLG--------ATN 443
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKR-VETEPGSSILQ 471
+ D++ LS+++A A D + R+ V R + PG S ++
Sbjct: 444 AGDYIILSDMHARAHN-RDAAAARRTEAVDRGLAQAPGYSAVE 485
>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 721
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 196/354 (55%), Gaps = 18/354 (5%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA---SNKDISSGKKVFDQMPMRSSAT 177
SL L GRQ H + K GF N V + LI FY+ + +KVF ++
Sbjct: 252 SLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVV 311
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN MI+GY + +++ A+ FR M G +P D + VCV S S L
Sbjct: 312 WNTMISGYSMNEELSEE----AVKSFRQM--QRIGHRPDDCSFVCVTSACSNLSSPSQCK 365
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HG K+ ++P N + + AL+ +Y K G L +A +F RM E N +++ M G A
Sbjct: 366 QIHGLAIKS-HIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQ 424
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG G EA+ L M D G+ PN +TF ++ +AC H G V+EG F+ MK + +EP +
Sbjct: 425 HGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAE 484
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HYSC++DLLGRAG LEEA FI +P KP ++ W +LL AC H ++AL E+ L+ +
Sbjct: 485 HYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVM 544
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
QP +A T +V L+N+YA A +W ++ SVRK M+ KR+ +PG S ++
Sbjct: 545 QP------LAATP--YVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIE 590
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 118/295 (40%), Gaps = 49/295 (16%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV ++ YA + I +++FD++P + ++N +I+GY + F A+VL
Sbjct: 73 NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARE-----TFAAMVL 127
Query: 203 FRDML---VDVSGVKPTDTTMVCVLSVS--SQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
F+ M +V G + C V QL Y +
Sbjct: 128 FKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSS-----------VN 176
Query: 258 TALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
A V YSK G L A+ +F M E ++ ++W +M H +G +A+ L M G
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236
Query: 317 KPNAVTFTSLFAACC-----------HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
K + T S+ A H L++ G H H+ S ++D
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQ----------NSHVG--SGLIDF 284
Query: 366 LGRAGHLEEAYNF--IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ G + Y+ + + PD ++W +++S +++ + L E+ K Q+Q
Sbjct: 285 YSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE--LSEEAVKSFRQMQ 337
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 11/183 (6%)
Query: 242 YMEKTFYMPEN-DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y FY E +VF +V Y+K + A +F + + + +++ + +G A +
Sbjct: 61 YARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARE 120
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
A+ L MR G + + T + L AACC + + LH F G + + +
Sbjct: 121 TFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFS---VSGGFDSYSSVNN 177
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
V + G L EA + G+ D + W S++ A H K G L L E
Sbjct: 178 AFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQH-------KEGAKALALYKE 230
Query: 421 VTF 423
+ F
Sbjct: 231 MIF 233
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 19/357 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G++IH +V ++G +V + ++L+ YA + I ++VF ++ R +WN+++ GY
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + AL LFR M+ + VKP V+ + L L G +HGY+ +
Sbjct: 321 NGRYNE-----ALRLFRQMVT--AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 373
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ +++FI +ALVDMYSKCG + A IF RM + ++WTA+ G A+HG G+EA+ L
Sbjct: 374 F--GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ GVKPN V F ++ AC H GLV+E F++M +G+ ++HY+ + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG LEEAYNFI + ++P +W +LLS+C+VH ++ L EKV + + + E
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE------- 544
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ--TTTHYTLDGFR 482
+V + N+YAS RW ++ +R +M+ K + +P S ++ TH + G R
Sbjct: 545 -NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/432 (25%), Positives = 188/432 (43%), Gaps = 73/432 (16%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
I + S KQ+HAQ I S + +I +Y K ++ +F P + +
Sbjct: 18 IKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALL----LFKTLKSPPVLAW 73
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTF----------DDFTYVFALGSCARFCSLSTLWL 127
++IRC Q SK L +F D + L SC L
Sbjct: 74 KSVIRCFTDQS-------LFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR---F 123
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYAS----NKDISSGKKVFDQMPMRSS-------- 175
G +H + + G ++ L++ YA IS G VFD+MP R+S
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVG-NVFDEMPQRTSNSGDEDVK 182
Query: 176 -------------------------ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
++N +I GY +QS +D AL + R+M
Sbjct: 183 AETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGY-AQSGMYED----ALRMVREM--GT 235
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
+ +KP T+ VL + S+ + G +HGY+ + ++DV+IG++LVDMY+K +
Sbjct: 236 TDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGI--DSDVYIGSSLVDMYAKSARI 293
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+++ +FSR+ ++ ++W ++ G +G+ NEA+RL M VKP AV F+S+ AC
Sbjct: 294 EDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H + G L + + G +I S +VD+ + G+++ A + + D +
Sbjct: 354 AHLATLHLGKQLHGYV-LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVS 411
Query: 391 WRSLLSACNVHG 402
W +++ +HG
Sbjct: 412 WTAIIMGHALHG 423
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 16/277 (5%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
K+IH +I + S + + L+ +Y S + VF+ + +N+L+
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSER----VFSRLYCRDGISWNSLV-A 316
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKRGFMF 142
Q+ A + + ++T A S C+ L+TL LG+Q+H +V + GF
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N+ +A+ L+ Y+ +I + +K+FD+M + +W A+I G+ A+ L
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH-----GHEAVSL 431
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M GVKP V VL+ S +GL++ M K + + + ++ A+ D
Sbjct: 432 FEEM--KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ-ELEHYAAVAD 488
Query: 263 MYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
+ + G L+ A S+M E W+ + + ++H
Sbjct: 489 LLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH 525
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 215/375 (57%), Gaps = 24/375 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L +CA SL L LG QIH V K G NV V+ L+ YA +I +
Sbjct: 306 NNFTFASVLQACA---SLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSV 362
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML-VDVSGVKPTDTTMVCV 223
K+F ++ WN +I GY K AL LF +ML +D+ +PT+ T V
Sbjct: 363 KLFTGSTEKNEVAWNTIIVGYVQLGDGEK-----ALNLFSNMLGLDI---QPTEVTYSSV 414
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L S+ L LE G +H KT Y D + +L+DMY+KCG +D+A L F +M ++
Sbjct: 415 LRASASLVALEPGRQIHSLTIKTMY--NKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQ 472
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+ ++W A+ G +IHG G EA+ L D M+ KPN +TF + +AC +AGL+++G F
Sbjct: 473 DEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHF 532
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+M +G+EP I+HY+C+V LLGR+G +EA I IP +P ++WR+LL AC +H +
Sbjct: 533 KSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKN 592
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ LG+ + +L+++P+ V LSN+YA+A+RW +V VRK MK K+V+
Sbjct: 593 LDLGKVCAQRVLEMEPQ--------DDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKK 644
Query: 464 EPGSSIL--QTTTHY 476
EPG S + Q HY
Sbjct: 645 EPGLSWVENQGVVHY 659
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 172/353 (48%), Gaps = 27/353 (7%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+DS+L+F G ++FT AL SC L +G+ +H K + ++ V
Sbjct: 187 EDSLLLFCQMRIMGYRP-NNFTISAALKSCN---GLEAFKVGKSVHGCALKVCYDRDLYV 242
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206
L+ Y + +I+ ++ F++MP W+ MI+ Y +QS K+K+ AL LF M
Sbjct: 243 GIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRY-AQSDKSKE----ALELFCRM 297
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
S V P + T VL + L LL G +H + K +++VF+ AL+D+Y+K
Sbjct: 298 R-QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGL--DSNVFVSNALMDVYAK 354
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
CG ++N++ +F+ EKN + W + G G G +A+ L +M ++P VT++S+
Sbjct: 355 CGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSV 414
Query: 327 FAACCHAGLVEEGLHLFD-NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
A +E G + +K+ + + + + ++D+ + G +++A K
Sbjct: 415 LRASASLVALEPGRQIHSLTIKTMYNKDSVVA--NSLIDMYAKCGRIDDA-RLTFDKMDK 471
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP------EVTFVDV--ACTS 430
D + W +L+ ++HG LG + + +Q ++TFV V AC++
Sbjct: 472 QDEVSWNALICGYSIHG---LGMEALNLFDMMQQSNSKPNKLTFVGVLSACSN 521
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 145/314 (46%), Gaps = 21/314 (6%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H +V K G + V T LI Y+ ++ + ++VFD + + +W M+ Y
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENY- 184
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
C ++L+LF M + G +P + T+ L + L + G VHG K Y
Sbjct: 185 ----CHEDSLLLFCQM--RIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCY-- 236
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ D+++G AL+++Y+K G + A F M + +++ W+ M + A K EA+ L
Sbjct: 237 DRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCR 296
Query: 311 MRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
MR V PN TF S+ AC L+ G + + K G++ ++ + ++D+ +
Sbjct: 297 MRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL-KVGLDSNVFVSNALMDVYAKC 355
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL-----LQLQP-EVTF 423
G +E + G + + + W +++ GD GEK + L +QP EVT+
Sbjct: 356 GEIENSVKLFTG-STEKNEVAWNTIIVGYVQLGD---GEKALNLFSNMLGLDIQPTEVTY 411
Query: 424 VDVACTSEDFVALS 437
V S VAL
Sbjct: 412 SSVLRASASLVALE 425
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 23/275 (8%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ +H H+ K G ++ L++ Y + K+FD+MP+ ++ ++ + G+ S
Sbjct: 22 GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGF-S 80
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+S + + L LFR+ G + +L + + L + VH Y+ K
Sbjct: 81 RSHQFQRARRLLLRLFRE------GYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLG 134
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ + D F+GTAL+D YS CG +D A +F + K++++WT M A + +++ L
Sbjct: 135 H--QADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLL 192
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS------C 361
MR G +PN T ++ +C GL F KS G + +
Sbjct: 193 FCQMRIMGYRPNNFTISAALKSC-------NGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
+++L ++G + EA F +P K D I W ++S
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMIS 279
>gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Glycine max]
Length = 503
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 242/475 (50%), Gaps = 49/475 (10%)
Query: 23 HIKQIHAQLITN------------ALKSP----PLYAQLIQLYCTKKASPQSTKIVHFVF 66
+KQIH+ +ITN +L P LY LI Y + + H +
Sbjct: 54 QMKQIHSLIITNGHLHQHQNVPSSSLSLPWMPTLLYNALISAYHIHNHNKALSIFTHMLA 113
Query: 67 THFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
PPN F L++ +P + + + +GLL+ D F L AR L
Sbjct: 114 NQ-APPNSHTFPPLLKISPLPLGATLHSQTLKRGLLS-DGFILTTLLALYARNHLLP--- 168
Query: 127 LGRQIHVHVTKRGF-MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
H + F MF ++ +I+ ++ N D+ + +F++MP R +W +++G+
Sbjct: 169 -----HARMVFEEFPMFCIVACNAMINAFSMNGDMEAAVALFERMPRRDVFSWTTVVDGF 223
Query: 186 CSQSKKAKDCAFNALVLFRDMLVD---VSG-VKPTDTTMVCVLSVSSQL---GLLEFGAC 238
+ F FR+M+ V+G VKP + T VLS + L L++G
Sbjct: 224 ALKGNFGASIRF-----FRNMMNHKDVVAGLVKPNEATCSSVLSSCANLDGKAALDWGKQ 278
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
VHGY+ + VF+GT+L+ +Y K GCL NA +F M + V TW AM + +A H
Sbjct: 279 VHGYV--VMNEVKLGVFVGTSLIHLYGKMGCLSNAENVFRVMVVREVCTWNAMISSLASH 336
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ A+ + D M+ G+KPN++TF ++ AC LV EGL LF +M +G+EP++KH
Sbjct: 337 GREKNALDMFDRMKLHGLKPNSITFAAVLTACARGNLVREGLDLFRSMWYDFGIEPNLKH 396
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C++DLLGRAGH+EEA I +P +PDA + + L AC +HG + LGE++GK +L+LQ
Sbjct: 397 YGCVIDLLGRAGHIEEAAEIIRNMPFQPDASVLGAFLGACRIHGAIELGEEIGKNMLRLQ 456
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+ S +V LS++ A ERW ++R+++ ++ P S+L T
Sbjct: 457 TQ--------HSGQYVLLSSMNAEKERWDRAANLRREIMEAGIQKIPAYSMLHLT 503
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 206/363 (56%), Gaps = 21/363 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+DFT L C+ ++ + LG Q+H TK G N+ + +L++ Y I K
Sbjct: 181 NDFTLTSVLSLCS---TIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKD------CAFNALVLFRDMLVDVSGVKPTDT 218
+F++M ++ TWNAMI G+ AKD AL ++ + ++ SG KP
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMY--LKLNRSGRKPDLF 295
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+ +L+V S+L LE G +H K+ ++ +DV +GTALVDMY KCG ++ A F
Sbjct: 296 TLSSILTVCSRLAALEQGEQIHAQTIKSGFL--SDVVVGTALVDMYDKCGSIERARKAFL 353
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M + +++WT+M T A HG+ A++L + MR G +PN +TF + AAC HAG+V+E
Sbjct: 354 DMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDE 413
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
L F+ M+ ++ ++P + HY C+VD+ R G L+EA++ I + ++P+ +W L++ C
Sbjct: 414 ALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGC 473
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
HG+ LG + LL+L+P T E +V L N+Y SAERW DV VR+ MK
Sbjct: 474 RNHGNEELGFYAAEQLLKLKPRST--------ETYVVLLNMYISAERWEDVSMVRRLMKE 525
Query: 459 KRV 461
++V
Sbjct: 526 EKV 528
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 187/422 (44%), Gaps = 43/422 (10%)
Query: 65 VFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF + N+ ++ TL ++ + P+ +V VF + G +FT AL +C+
Sbjct: 37 VFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFP-SNFTLSIALNACS--- 92
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
SL ++ LG+Q H + K + + L Y+ + S K F + + +W
Sbjct: 93 SLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTT 152
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I+ C + +A L LF +ML + V+P D T+ VLS+ S + + G VH
Sbjct: 153 IISA-CGDNGRAG----MGLRLFIEMLFE--NVEPNDFTLTSVLSLCSTIQSSDLGMQVH 205
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA---- 296
K + E+++ I +LV +Y KCGC+D A +F+RM KN++TW AM G A
Sbjct: 206 SLSTKLGH--ESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMD 263
Query: 297 -------IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
G EA+ + + G KP+ T +S+ C +E+G + K
Sbjct: 264 LAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQ-TIK 322
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV--ALG 407
G + + +VD+ + G +E A + + + I W S++++ HG AL
Sbjct: 323 SGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRT-LISWTSMITSFARHGQSQHALQ 381
Query: 408 EKVGKILLQLQP-EVTFVDV--ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L +P ++TFV V AC+ V E E ++K+ K+K V
Sbjct: 382 LFEDMRLAGFRPNQITFVGVLAACSHAGMV--------DEALEYFEIMQKEYKIKPVMDH 433
Query: 465 PG 466
G
Sbjct: 434 YG 435
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 133/267 (49%), Gaps = 11/267 (4%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H HV K G V + L++ YA + + +KVFD +P R+ W ++ GY S+
Sbjct: 2 VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
A+ +F DML SG P++ T+ L+ S L + G H ++ K Y
Sbjct: 62 PEV-----AVEVFGDMLE--SGSFPSNFTLSIALNACSSLESITLGKQFHAFIIK--YRI 112
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+D IG AL +YSK G LD+++ F EK+V++WT + + +G+ +RL
Sbjct: 113 SHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIE 172
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M V+PN T TS+ + C + G+ + ++ +K G E +++ + +V L + G
Sbjct: 173 MLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVH-SLSTKLGHESNLRITNSLVYLYLKCG 231
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSA 397
++EA N + K + I W ++++
Sbjct: 232 CIDEAKNLFNRMEYK-NLITWNAMIAG 257
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 202/370 (54%), Gaps = 22/370 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF--NVLVATTLIHFYASNKDISS 162
D F++ A+ +C+ +L L GR+IH + + G +V+V T L++ Y+ D+
Sbjct: 133 DKFSFSIAIEACS---NLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEE 189
Query: 163 GKKVFDQMPMRS-SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+KVFD + + S WNAMI Y + + AL L+R M D + + P T V
Sbjct: 190 ARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQ-----ALDLYRSMH-DTTDLAPKQGTFV 243
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V+ V ++L L+ G +H + T + + ++ + ALV MY KCGCLD AL +F M+
Sbjct: 244 TVIDVCAELSALKQGRAIHARVRATNF--DANLLVSNALVHMYGKCGCLDEALDVFHSMK 301
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
K+ ++W + + A HG ++A+ L M GVKP VTF L +AC H GLV +GL
Sbjct: 302 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLD 361
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F M+ ++P + H+ CI+DLLGR G L EA + +PI+ +A+ W SLL AC H
Sbjct: 362 YFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTH 421
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GD+ G + ++ P TS +V LSNIYA+A RW DVE +RK M + V
Sbjct: 422 GDLKRGVRAADQVVDRVP--------WTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGV 473
Query: 462 ETEPGSSILQ 471
+ PG S ++
Sbjct: 474 KKSPGKSWIE 483
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 14/315 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR+IH + G + NV+V T +I Y + + F+++ ++S TWNAM+ Y
Sbjct: 50 GREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKL 109
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + AL LFR+M +P + + S L LE G +H + +
Sbjct: 110 DGRDRE-----ALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREG 164
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGKGNEAIR 306
DV +GTAL++MYSKCG L+ A +F +R + + + W AM A HG+G +A+
Sbjct: 165 KELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALD 224
Query: 307 LLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L SM D + P TF ++ C +++G + +++ + ++ + +V +
Sbjct: 225 LYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRAT-NFDANLLVSNALVHM 283
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQP-EVT 422
G+ G L+EA + + +K D I W +++S+ HG D AL L ++P EVT
Sbjct: 284 YGKCGCLDEALDVFHSMKLK-DEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVT 342
Query: 423 FVDV--ACTSEDFVA 435
FV + AC+ VA
Sbjct: 343 FVGLLSACSHGGLVA 357
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 11/214 (5%)
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL--LEFGACVHGYMEKTFYMPEN 252
C ALV FR M SG +P T +L+ +Q+G ++ G +H Y + +P
Sbjct: 9 CHSEALVFFRRMYQ--SGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLP-- 64
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM- 311
+V +GTA++ MY KCG LD+A F ++ KN +TW AM T + G+ EA+ L M
Sbjct: 65 NVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMC 124
Query: 312 -RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH--IKHYSCIVDLLGR 368
R +P+ +F+ AC + +E+G + + ++ + G E H + + ++++ +
Sbjct: 125 ERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRRE-GKELHKDVVVGTALLNMYSK 183
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
G LEEA I D++ W ++++A HG
Sbjct: 184 CGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHG 217
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/378 (34%), Positives = 219/378 (57%), Gaps = 22/378 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
DDFTY L +CA L +L G +H K G + V++T++ Y I+ +
Sbjct: 438 DDFTYGSVLKACA---GLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQ 494
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ D++ + +WN++I+G+ S +K++++ A F +ML D+ GVKP T VL
Sbjct: 495 KLHDRIGGQELVSWNSIISGF-SLNKQSEE----AQKFFSEML-DI-GVKPDHFTYATVL 547
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L +E G +HG + K + D +I + LVDMY+KCG + ++LL+F + ++ +
Sbjct: 548 DTCANLATIELGKQIHGQIIKQEML--GDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLD 605
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W AM G A+HG+G EA+ + + M+ V PN TF ++ AC H GL+++G F
Sbjct: 606 FVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFY 665
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M S++ +EP ++H++C+VD+LGR+ +EA FI +P++ DA++W++LLS C + DV
Sbjct: 666 LMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDV 725
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ E +L+L P+ + V ++ LSN+YA + +W DV R+ M+ R++ E
Sbjct: 726 EVAETAASNVLRLDPDDSSV--------YILLSNVYAESGKWVDVSRTRRLMRQGRLKKE 777
Query: 465 PGSSIL--QTTTHYTLDG 480
PG S + Q+ H L G
Sbjct: 778 PGCSWIEVQSEMHGFLAG 795
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 157/361 (43%), Gaps = 43/361 (11%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
F++++ L + A +L+T G+ H + GFM V+ L+ YA + + V
Sbjct: 5 FSHLYQLCAGAGRSALAT---GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGV 61
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCA------------FNALV-------LFRD-- 205
FD MP R + +WN M+ Y + +NAL+ +FRD
Sbjct: 62 FDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSV 121
Query: 206 -MLVDVS--GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
+ V+++ GV P TT+ +L L L G +H KT E DV G+ALVD
Sbjct: 122 GLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGL--EMDVRAGSALVD 179
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KC L++AL F M E+N ++W A G + + + L M+ G+ +
Sbjct: 180 MYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPA 239
Query: 323 FTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
+ S+F +C + L + +K+K+ + + + IVD+ +A L +A
Sbjct: 240 YASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVG--TAIVDVYAKADSLVDARRAFFS 297
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P + ACN + +G LQL F+ + D V+LS +++
Sbjct: 298 LP--------NHTVQACNAMMVGLVRTGLGAEALQL---FQFMTRSGIGFDVVSLSGVFS 346
Query: 442 S 442
+
Sbjct: 347 A 347
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 148/345 (42%), Gaps = 50/345 (14%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
Y SCA LST RQ+H H K F + +V T ++ YA + ++ F
Sbjct: 239 AYASVFRSCAAITCLST---ARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAF 295
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+P + NAM+ G A+ AL LF+ M SG+ ++ V S
Sbjct: 296 FSLPNHTVQACNAMMVGLVRTGLGAE-----ALQLFQFMTR--SGIGFDVVSLSGVFSAC 348
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+++ G VH K+ + + DV + A++D+Y KC L A L+F M +++ ++
Sbjct: 349 AEVKGYLQGLQVHCLAIKSGF--DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVS 406
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
W A+ + + + I L+ M G++P+ T+ S+ AC +E G + +
Sbjct: 407 WNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAI 466
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHL-------------------------------EEA 375
KS G++ + S +VD+ + G + EEA
Sbjct: 467 KSGLGLDAFVS--STVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEA 524
Query: 376 YNF---IMGIPIKPDAILWRSLLSACNVHGDVALGEKV-GKILLQ 416
F ++ I +KPD + ++L C + LG+++ G+I+ Q
Sbjct: 525 QKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQ 569
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/367 (32%), Positives = 207/367 (56%), Gaps = 20/367 (5%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+T++ L SC+ SLS + LG+Q+H + K N V T L+ YA N+ + + +
Sbjct: 533 YTFISILRSCS---SLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI 589
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
F+++ R W ++ GY + K A+ F M + GVKP + T+ LS
Sbjct: 590 FNRLIKRDLFAWTVIVAGYAQDGQGEK-----AVKCFIQMQRE--GVKPNEFTLASSLSG 642
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S++ L+ G +H K D+F+ +ALVDMY+KCGC+++A ++F + ++ +
Sbjct: 643 CSRIATLDSGRQLHSMAIKA--GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV 700
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+W + G + HG+G +A++ ++M D G P+ VTF + +AC H GL+EEG F+++
Sbjct: 701 SWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSL 760
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+G+ P I+HY+C+VD+LGRAG E +FI + + + ++W ++L AC +HG++
Sbjct: 761 SKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEF 820
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
GE+ L +L+PE+ +++ LSN++A+ W DV +VR M + V+ EPG
Sbjct: 821 GERAAMKLFELEPEI--------DSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPG 872
Query: 467 SSILQTT 473
S ++
Sbjct: 873 CSWVEVN 879
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 118/477 (24%), Positives = 203/477 (42%), Gaps = 69/477 (14%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
K IH Q+I + + L+ L+ +Y ++ + K VF ++ + LI
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK----VFGEIPERDVVSWTALITG 203
Query: 84 TPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ +V +F +G+ ++FTY AL +C+ L G+Q+H K G
Sbjct: 204 FVAEGYGSGAVNLFCEMRREGVEA-NEFTYATALKACSMCLDLE---FGKQVHAEAIKVG 259
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
++ V + L+ YA ++ ++VF MP +++ +WNA++NG+ K
Sbjct: 260 DFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK-----V 314
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L LF M S + + T+ VL + G L G VH + E D FI
Sbjct: 315 LNLFCRMTG--SEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRI--GCELDEFISCC 370
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMYSKCG +AL +F R+ + +V++W+A+ T + G+ EA + MR GV PN
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---- 375
T SL +A G + G + + K+G E + +V + + G +++
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACV-CKYGFEYDNTVCNALVTMYMKIGSVQDGCRVF 489
Query: 376 ------------------------------YNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
+N ++ P+ + S+L +C+ DV
Sbjct: 490 EATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVD 549
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFV--ALSNIYASAERWPDVESVRKQMKVKR 460
LG++V V + DFV AL ++YA D E++ ++ +KR
Sbjct: 550 LGKQV---------HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKR 596
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 141/305 (46%), Gaps = 18/305 (5%)
Query: 98 SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157
SKG L Y L +CA S L G+ IH V K G + + +L++ YA
Sbjct: 124 SKGRLR----QYSGMLRTCA---SKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC 176
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+ KVF ++P R +W A+I G+ ++ + A+ LF +M + GV+ +
Sbjct: 177 GSANYACKVFGEIPERDVVSWTALITGFVAEGYGS-----GAVNLFCEMRRE--GVEANE 229
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T L S LEFG VH K +D+F+G+ALVD+Y+KCG + A +F
Sbjct: 230 FTYATALKACSMCLDLEFGKQVHAEAIKVGDF--SDLFVGSALVDLYAKCGEMVLAERVF 287
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M ++N ++W A+ G A G + + L M + + T +++ C ++G +
Sbjct: 288 LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLR 347
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G + ++ + G E C+VD+ + G +A + I PD + W ++++
Sbjct: 348 AG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITC 405
Query: 398 CNVHG 402
+ G
Sbjct: 406 LDQKG 410
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 136/316 (43%), Gaps = 30/316 (9%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HAQ++ N+L L+ +Y + + I F +LF + T+I
Sbjct: 552 KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI----FNRLIKRDLFAW-TVIVA 606
Query: 84 TPPQD-----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
QD +V F +G+ ++FT +L C+R +L + GRQ+H K
Sbjct: 607 GYAQDGQGEKAVKCFIQMQREGVKP-NEFTLASSLSGCSRIATLDS---GRQLHSMAIKA 662
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G ++ VA+ L+ YA + + VFD + R + +WN +I GY + K
Sbjct: 663 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK----- 717
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-PENDVFIG 257
AL F ML + G P + T + VLS S +GL+E G + K + + P + +
Sbjct: 718 ALKAFEAMLDE--GTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHY-- 773
Query: 258 TALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIHGK---GNEAIRLLDSMRD 313
+VD+ + G M+ NVL W + +HG G A L +
Sbjct: 774 ACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEP 833
Query: 314 CGVKPNAVTFTSLFAA 329
+ N + +++FAA
Sbjct: 834 -EIDSNYILLSNMFAA 848
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 168/402 (41%), Gaps = 29/402 (7%)
Query: 25 KQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HA+ I + + L+ LY A + VF N +N L+
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLY----AKCGEMVLAERVFLCMPKQNAVSWNALLNG 304
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
+ VL ++ + F FT L CA + L G+ +H + G
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCA---NSGNLRAGQIVHSLAIRIGC 361
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN--GYCSQSKKAKDCAFN 198
+ ++ L+ Y+ KVF ++ +W+A+I QS++A +
Sbjct: 362 ELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAE---- 417
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
+F+ M SGV P T+ ++S ++ LG L +G +H + K Y E D +
Sbjct: 418 ---VFKRM--RHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK--YGFEYDNTVCN 470
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
ALV MY K G + + +F +++++W A+ +G + + +R+ + M G P
Sbjct: 471 ALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNP 530
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N TF S+ +C V+ G + + K ++ + + +VD+ + LE+A
Sbjct: 531 NMYTFISILRSCSSLSDVDLGKQVHAQI-VKNSLDGNDFVGTALVDMYAKNRFLEDAET- 588
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
I IK D W +++ G GEK K +Q+Q E
Sbjct: 589 IFNRLIKRDLFAWTVIVAGYAQDGQ---GEKAVKCFIQMQRE 627
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+L + G L G +HG + K+ P++ ++ +LV++Y+KCG + A +F + E
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLW--NSLVNVYAKCGSANYACKVFGEIPE 191
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++V++WTA+ TG G G+ A+ L MR GV+ N T+ + AC +E G +
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
K G + S +VDL + G + A + +P K +A+ W +LL+ G
Sbjct: 252 HAE-AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNGFAQMG 309
Query: 403 DVALGEKVGKILLQLQ-PEVTF 423
D EKV + ++ E+ F
Sbjct: 310 DA---EKVLNLFCRMTGSEINF 328
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 238/453 (52%), Gaps = 30/453 (6%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+Q+H+ LI + S L LI +Y + S VF ++ +N +I
Sbjct: 232 RQLHSSLIKMDMGSDSFLGVGLIDMY----SKCNSMDDARLVFKLMPERDMIAWNAVISG 287
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ +++ +F ++G+ F+ T L S A +L ++ RQIH K G
Sbjct: 288 HSQNEEDEEAASLFPLMHTEGI-GFNQTTLSTVLKSIA---ALQANYMCRQIHALSLKSG 343
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F F+ V +LI Y + +VF++ P+ + +++ Y + + A
Sbjct: 344 FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEE-----A 398
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L L+ +M G+KP +L+ + L E G VH ++ K +M +D+F G +
Sbjct: 399 LRLYLEM--QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFM--SDIFAGNS 454
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LV+MY+KCG +++A FSR+ + +++W+AM G+A HG G EA++L M GV PN
Sbjct: 455 LVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPN 514
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+T S+ AC HAGLV E H F++MK +G+EP +HY+C++DLLGRAG LE A +
Sbjct: 515 HITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELV 574
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P + +A++W +LL A +H ++ LGE+ ++LL L+PE S V L+NI
Sbjct: 575 NKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPE--------KSGTHVLLANI 626
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
YAS W V VR+ MK +V+ EPG S L+
Sbjct: 627 YASVGMWDKVARVRRLMKDGKVKKEPGMSWLEV 659
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 14/289 (4%)
Query: 111 FALGSCARFCSLST-LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
FA S + C+++ L LG+Q+H V GF + VA +L+ YA + +FD
Sbjct: 11 FAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDA 70
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+P RS +WNA+ + Y D A+ LF DM++ SG++P + ++ +++V +
Sbjct: 71 IPDRSVVSWNALFSCYVHS-----DMHGEAVSLFHDMVL--SGIRPNEFSLSSMINVCTG 123
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L G +HGY+ K Y ++D F ALVDMY+K G L++A +F + + ++++W
Sbjct: 124 LEDSVQGRKIHGYLIKLGY--DSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWN 181
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KS 348
A+ G +H + A+ LL M G+ PN T +S AC L E G L ++ K
Sbjct: 182 AIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM 241
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G + + ++D+ + +++A +P + D I W +++S
Sbjct: 242 DMGSDSFLG--VGLIDMYSKCNSMDDARLVFKLMP-ERDMIAWNAVISG 287
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/406 (25%), Positives = 185/406 (45%), Gaps = 29/406 (7%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR- 82
++IH LI S A L+ +Y ++ VF P++ +N +I
Sbjct: 131 RKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASS----VFDEIAKPDIVSWNAIIAG 186
Query: 83 CTPPQ--DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
C + L ++K + + FT AL +CA ++ LGRQ+H + K
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACA---GMALRELGRQLHSSLIKMDM 243
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+ + LI Y+ + + VF MP R WNA+I+G+ SQ+++ ++ A
Sbjct: 244 GSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH-SQNEEDEEAA---- 298
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LF L+ G+ TT+ VL + L +H K+ + E D ++ +L
Sbjct: 299 SLFP--LMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGF--EFDNYVVNSL 354
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+D Y KCG +++A +F +++ +T++ T A G+G EA+RL M+D G+KP++
Sbjct: 355 IDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDS 414
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+SL AC E+G + ++ K+G I + +V++ + G +E+A
Sbjct: 415 FVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSDIFAGNSLVNMYAKCGSIEDASCAFS 473
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
IP++ + W +++ HG GK LQL ++ V V
Sbjct: 474 RIPVR-GIVSWSAMIGGLAQHG-------YGKEALQLFKQMLKVGV 511
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 4/190 (2%)
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
G+K + VL + L G VHG + T + ++D F+ +LV +Y+KCG
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGF--DSDEFVANSLVILYAKCGGFG 62
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+A +F + +++V++W A+ + EA+ L M G++PN + +S+ C
Sbjct: 63 DARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+G + + K G + + +VD+ + G LE+A + I KPD + W
Sbjct: 123 GLEDSVQGRKIHGYL-IKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSW 180
Query: 392 RSLLSACNVH 401
++++ C +H
Sbjct: 181 NAIIAGCVLH 190
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 236/453 (52%), Gaps = 32/453 (7%)
Query: 25 KQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+QIH ++ + P ++ LI +Y + ++ VF+ + +L + +I
Sbjct: 328 RQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAET----VFSRTECRDLVSWTAMISG 383
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
C PQ ++ + ++G++ D+ T L +C+ C+L +G +H ++G
Sbjct: 384 YENCLMPQKALETYKMMEAEGIMP-DEITIAIVLSACSCLCNLD---MGMNLHEVAKQKG 439
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ +VA +LI YA K I ++F ++ +W ++I G + + F A
Sbjct: 440 LVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGL-----RINNRCFEA 494
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L FR+M + +KP T+VCVLS +++G L G +H + +T D F+ A
Sbjct: 495 LFFFREM---IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGV--SFDGFMPNA 549
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
++DMY +CG ++ A F + + V +W + TG A GKG A L M + V PN
Sbjct: 550 ILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPN 608
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF S+ AC +G+V EGL F++MK K+ + P++KHY+C+VDLLGR+G LEEAY FI
Sbjct: 609 EVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFI 668
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P+KPD +W +LL++C +H V LGE L E F D + ++ LSN+
Sbjct: 669 QKMPMKPDPAVWGALLNSCRIHHHVELGE--------LAAENIFQDDTTSVGYYILLSNL 720
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
YA +W V VRK M+ + +PG S ++
Sbjct: 721 YADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEV 753
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 159/338 (47%), Gaps = 23/338 (6%)
Query: 64 FVFTHFDPPNLFLFNTLIRCTPPQ---DSVLVFAY---WVSKGLLTFDDFTYVFALGSCA 117
+VF + NLF +N L+ D L + WV + D +T+ L +C
Sbjct: 162 YVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG---VKPDVYTFPCVLRTCG 218
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ L GR+IHVHV + GF +V V LI Y D+++ + VFD+MP R +
Sbjct: 219 ---GMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRIS 275
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNAMI+GY L LF M++ V P TM V++ LG G
Sbjct: 276 WNAMISGYFENG-----VCLEGLRLF-GMMIKYP-VDPDLMTMTSVITACELLGDDRLGR 328
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HGY+ +T + D I +L+ MYS G ++ A +FSR +++++WTAM +G
Sbjct: 329 QIHGYVLRTEF--GRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYEN 386
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
+A+ M G+ P+ +T + +AC ++ G++L + K K V I
Sbjct: 387 CLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIV 446
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
S ++D+ + +++A I ++ + + W S++
Sbjct: 447 ANS-LIDMYAKCKCIDKALE-IFHSTLEKNIVSWTSII 482
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 132/272 (48%), Gaps = 15/272 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G +++ +V+ ++ + L+ + ++ VF +M R+ +WN ++ GY
Sbjct: 125 GSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGY-- 182
Query: 188 QSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
AK F+ AL L+ ML GVKP T CVL + L G +H ++ +
Sbjct: 183 ----AKAGLFDEALDLYHRML--WVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIR- 235
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
Y E+DV + AL+ MY KCG ++ A L+F +M ++ ++W AM +G +G E +R
Sbjct: 236 -YGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLR 294
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDL 365
L M V P+ +T TS+ AC G G + +++++G +P I ++ ++ +
Sbjct: 295 LFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSI--HNSLIPM 352
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G +EEA + D + W +++S
Sbjct: 353 YSSVGLIEEAETVFSRTECR-DLVSWTAMISG 383
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/452 (32%), Positives = 242/452 (53%), Gaps = 29/452 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HA+L + + L +L+ Y + S + H +F NLFL+N LIR
Sbjct: 78 KQLHARLCQLGIAYNLDLATKLVNFY----SVCNSLRNAHHLFDKIPKGNLFLWNVLIRA 133
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
P ++ + + + + L D+FT F L +C+ +LST+ GR IH V + G+
Sbjct: 134 YAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACS---ALSTIGEGRVIHERVIRSGW 190
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+V V L+ YA + + VFD++ R + WN+M+ Y + +L
Sbjct: 191 ERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDE-----SL 245
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
L +M GV+PT+ T+V V+S S+ + L G +HG+ + + + V TAL
Sbjct: 246 SLCCEMAA--KGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKV--KTAL 301
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
+DMY+KCG + A ++F R+REK V++W A+ TG A+HG EA+ L + M +P+
Sbjct: 302 IDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMK-EAQPDH 360
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF AAC L++EG L++ M + P ++HY+C+VDLLG G L+EAY+ I
Sbjct: 361 ITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIR 420
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+ + PD+ +W +LL++C HG+V L E + L++L+P+ S ++V L+N+Y
Sbjct: 421 QMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPD--------DSGNYVILANMY 472
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
A + +W V +R+ M K ++ S ++
Sbjct: 473 AQSGKWEGVARLRQLMIDKGIKKNIACSWIEV 504
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 167/355 (47%), Gaps = 22/355 (6%)
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
P FL + PQ V F S + + Y L SC S L G+Q+
Sbjct: 30 PYYFLHQSFATQLIPQHKVDSFPSSPS------NHYYYASLLESCI---SAKALEPGKQL 80
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H + + G +N+ +AT L++FY+ + + +FD++P + WN +I Y
Sbjct: 81 HARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPH 140
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
A+ L+ ML G+KP + T+ VL S L + G +H + ++ + E
Sbjct: 141 E-----TAISLYHQML--EYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGW--E 191
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DVF+G ALVDMY+KCGC+ +A +F ++ +++ + W +M A +G +E++ L M
Sbjct: 192 RDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEM 251
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
GV+P T ++ ++ + G + + G + + K + ++D+ + G
Sbjct: 252 AAKGVRPTEATLVTVISSSADIACLPHGREIH-GFGWRHGFQYNDKVKTALIDMYAKCGS 310
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKILLQLQPE-VTFV 424
++ A + K + W ++++ +HG V + +++ + QP+ +TFV
Sbjct: 311 VKVACVLFERLREK-RVVSWNAIITGYAMHGLAVEALDLFERMMKEAQPDHITFV 364
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 231/441 (52%), Gaps = 24/441 (5%)
Query: 34 NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI---RCTPPQDSV 90
N L +P L +LI L+ + ++ ++ D P I R P++++
Sbjct: 104 NLLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEAL 163
Query: 91 LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL 150
L++ V + +F + AL +C+ L T GR +H V K + +V L
Sbjct: 164 LLYYEMVCQ-FGQLGNFAFSMALKACSDLGDLQT---GRAVHAQVLKATEDPDQVVNNAL 219
Query: 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
+ Y+ + +VFD MP R+ +WN++I G KD F A+ FR ++
Sbjct: 220 LRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVK-----KDGVFEAIEAFR--IMQG 272
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
G+ + T+ +L V +++ L G +H + K+ P+ V +LVDMY+KCG +
Sbjct: 273 KGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVL--NSLVDMYAKCGAM 330
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
D +F+ M+ K++ +W + TG AI+G+ EA+ M G P+ +TF +L + C
Sbjct: 331 DYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGC 390
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
HAGL ++G LF+ MK +G+ P ++HY+C+VD+LGRAG ++EA + +P KP +
Sbjct: 391 SHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSI 450
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W SLL++C +HG+V L E V K L +L+P + ++V LSNIYA+A W V+
Sbjct: 451 WGSLLNSCRLHGNVPLAEAVAKRLFELEPN--------NAGNYVMLSNIYANAGMWESVK 502
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
VR+ M+ + + E G S LQ
Sbjct: 503 VVREFMEKRGMTKEAGCSWLQ 523
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 193/334 (57%), Gaps = 20/334 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T ++ YA + + +FD +P + WNAM++GY + ++ AL L
Sbjct: 187 HVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSE-----ALRL 241
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN--DVFIGTAL 260
FR ML SGV+P + ++V LS +QLG E G +H ++ + +GTAL
Sbjct: 242 FRQMLR--SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTAL 299
Query: 261 VDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
VDMY KCG L+ A+ +F + +++V+ W AM G A+HG+ EA+ +R G+
Sbjct: 300 VDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLW 359
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P +TF + AC H+GLV+EG LF M+ ++G+ P ++HY C+VDLLGRAG +EEA++
Sbjct: 360 PTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFD 419
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
+ + KPDA +W SLL AC +H ++ALG++V L+ + S +V LS
Sbjct: 420 LVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVG--------NGLANSGTYVLLS 471
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
N+YA+A +W +V VR M+ V+ EPG S ++
Sbjct: 472 NMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVE 505
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 48/345 (13%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH + + VA L YA++ + + + P ++ + + I+ + S+
Sbjct: 42 EIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRG 101
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK---- 245
AL L +ML+ G+ PT T+ L G L G +HGY K
Sbjct: 102 LHRA-----ALALLSEMLLSRHGLLPTAHTLSASLPAC---GCLAVGRALHGYAVKLALS 153
Query: 246 --------------------------TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
P+ V TA++ Y+K G LD+A +F
Sbjct: 154 GEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDA 213
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ K+++ W AM G HG+ +EA+RL M GV+P+ V+ +A G E G
Sbjct: 214 LPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESG 273
Query: 340 --LHLF-DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI--MGIPIKPDAILWRSL 394
LH F N + V + + + +VD+ + G LEEA +G D + W ++
Sbjct: 274 RWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAM 333
Query: 395 LSACNVHGDVALG-EKVGKILLQ-LQP-EVTFVDV--ACTSEDFV 434
++ +HG E G++ Q L P ++TF+ V AC+ V
Sbjct: 334 INGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLV 378
>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 214/366 (58%), Gaps = 18/366 (4%)
Query: 111 FALGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
++LGS R C+ L L G+Q+H +V K GF N++V +L H Y + G++V +
Sbjct: 202 YSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINW 261
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP S WN +++G KA+ F VL + ++ ++G +P T V V+S S+
Sbjct: 262 MPDCSLVAWNTLMSG------KAQKGYFEG-VLDQYCMMKMAGFRPDKITFVSVISSCSE 314
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L +L G +H E ++V + ++LV MYS+CGCL +++ F +E++V+ W+
Sbjct: 315 LAILCQGKQIHA--EAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWS 372
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+M HG+G EAI+L + M + N +TF SL AC H GL ++GL LFD M K
Sbjct: 373 SMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKK 432
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G++ ++HY+C+VDLLGR+G LEEA I +P+K DAI+W++LLSAC +H + + +
Sbjct: 433 YGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARR 492
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
V +L++ P+ S +V L+NIY+SA RW +V VR+ MK K V+ EPG S
Sbjct: 493 VADEVLRIDPQ--------DSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISW 544
Query: 470 LQTTTH 475
++
Sbjct: 545 VEVKNQ 550
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 14/278 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N++ +I Y ++ S K +FD+MP R+ ATWNAM+ G + AL+L
Sbjct: 134 NIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEE-----ALLL 188
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F M + P + ++ VL + LG L G VH Y+ K + E ++ +G +L
Sbjct: 189 FSRM--NELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGF--ECNLVVGCSLAH 244
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY K G + + + + M + +++ W + +G A G + M+ G +P+ +T
Sbjct: 245 MYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKIT 304
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F S+ ++C ++ +G + K G + S +V + R G L+++ +
Sbjct: 305 FVSVISSCSELAILCQGKQIHAE-AVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLEC 363
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+ D +LW S+++A HG GE+ K+ +++ E
Sbjct: 364 K-ERDVVLWSSMIAAYGFHGQ---GEEAIKLFNEMEQE 397
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 8/201 (3%)
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
MP ++ ++ Y G L++A +F M ++NV TW AM TG+ EA+ L
Sbjct: 130 MPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLF 189
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
M + P+ + S+ C H G + G + + K G E ++ + + +
Sbjct: 190 SRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVM-KCGFECNLVVGCSLAHMYMK 248
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVGKILLQLQPE-VTFVD 425
AG + + I +P + W +L+S G + L + + +P+ +TFV
Sbjct: 249 AGSMHDGERVINWMP-DCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVS 307
Query: 426 VACTSEDFVAL---SNIYASA 443
V + + L I+A A
Sbjct: 308 VISSCSELAILCQGKQIHAEA 328
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 200/391 (51%), Gaps = 41/391 (10%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D + + K + D L +CAR SL G+ +H ++ N+ V
Sbjct: 334 DGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDN---GKDVHDYIKANNMESNLFVC 390
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
L+ YA + + VF M ++ +WN MI
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI------------------------- 425
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+KP TM CVL + L LE G +HGY+ + Y +D + ALVD+Y KC
Sbjct: 426 ---GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY--SSDRHVANALVDLYVKC 480
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A L+F + K++++WT M G +HG GNEAI + MRD G++P+ V+F S+
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL+E+G F MK+ + +EP ++HY+C+VDLL R G+L +AY FI +PI PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A +W +LL C + D+ L EKV + + +L+PE S +V L+NIYA AE+W
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPE--------NSGYYVLLANIYAEAEKWE 652
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +R+++ + + PG S ++ L
Sbjct: 653 EVKRLREKIGKQGLRKNPGCSWIEIKGKVNL 683
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 146/333 (43%), Gaps = 53/333 (15%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L CA L + G+++H + + + L+ FYA+ D+ G++VF
Sbjct: 101 TYSSVLQLCA---GLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVF 157
Query: 168 DQMPMRSSATWNAMINGYCSQSK-KAKDCAFNALV--------------LFRDMLVDVS- 211
D M ++ WN M++ Y K C F +V LF D L D
Sbjct: 158 DTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELF-DKLCDRDV 216
Query: 212 -----------------------------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
G+ T++ VL + G L G VH
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
K+ + E + L+DMYSKCG LD AL +F +M E+NV++WT+M G G+ +
Sbjct: 277 AIKSSF--ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
AI+LL M GVK + V TS+ AC +G ++ G + D +K+ +E ++ + +
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNAL 393
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+D+ + G +E A N + + D I W +++
Sbjct: 394 MDMYAKCGSMEAA-NSVFSTMVVKDIISWNTMI 425
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 50 CTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTF 104
C + S + K VH ++ + NLF+ N L+ +C + + VF+ V K ++++
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISW 421
Query: 105 ---------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
D T L +CA SLS L G++IH ++ + G+ + VA L+ Y
Sbjct: 422 NTMIGELKPDSRTMACVLPACA---SLSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVK 214
+ + +FD +P + +W MI GY + A FN + RD +G++
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM---RD-----AGIE 530
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL------VDMYSKCG 268
P + + + +L S GLLE G + FY+ +ND I L VD+ S+ G
Sbjct: 531 PDEVSFISILYACSHSGLLEQGW-------RFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583
Query: 269 CLDNA 273
L A
Sbjct: 584 NLSKA 588
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 199/348 (57%), Gaps = 21/348 (6%)
Query: 128 GRQIHVHVTKRGFMF----NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
GR+ V + +R F N++ +I Y ++ + +K+FD MP R +W +MI+
Sbjct: 942 GRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMIS 1001
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
Y + K A+ LF++M+V + VKP + T+ VLS + +G L+ G VH Y+
Sbjct: 1002 SYSQAGQFGK-----AVRLFQEMMV--TKVKPDEITVASVLSACAHIGALDVGEAVHEYI 1054
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
K Y D+++G AL+DMY KCG ++ L +F M +++ ++WT++ G+A++G +
Sbjct: 1055 RK--YDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADS 1112
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A+ L M GV+P TF + AC HAG+V++GL F++M+ +G+ P +KHY C+V
Sbjct: 1113 ALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVV 1172
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLL R+G+L AY FI +P+ PD ++WR LLSA VHG++ L E K LL+ P
Sbjct: 1173 DLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDP---- 1228
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +++ SN YA + RW DV +R+ M+ V SS ++
Sbjct: 1229 ----SNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVE 1272
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 196/415 (47%), Gaps = 65/415 (15%)
Query: 29 AQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR----CT 84
+ +I L + P+ + L + SP + + +F P L +N +IR
Sbjct: 718 SNMIKELLPTDPI--SIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTN 775
Query: 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV 144
P +++ + S+ L ++ TY F L +CAR ++S +H V K GF ++
Sbjct: 776 QPIEAIRNYNLMYSQALFG-NNLTYPFLLKACARISNVSCT----TVHARVLKLGFDSDL 830
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
V+ LIH YA ++ +KVFD+M R +WN++I GY + ++ LV+F
Sbjct: 831 FVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSE-----VLVVFE 885
Query: 205 DMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN----DVFIGTAL 260
+M + + VK TMV V+ + LG E+G V +E Y+ EN DV++G L
Sbjct: 886 EMRM--ADVKGDAVTMVKVVLACTVLG--EWGV-VDAMIE---YIEENKVEVDVYLGNTL 937
Query: 261 VDMYSKCGCLDNALLIFSRMREKN-------------------------------VLTWT 289
+DMY + +D A +F RMR++N V++WT
Sbjct: 938 IDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWT 997
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+M + + G+ +A+RL M VKP+ +T S+ +AC H G ++ G + + ++ K
Sbjct: 998 SMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIR-K 1056
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFI--MGIPIKPDAILWRSLLSACNVHG 402
+ V I + ++D+ + G +E+ + MG K D++ W S+++ V+G
Sbjct: 1057 YDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMG---KRDSVSWTSVIAGLAVNG 1108
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T L +CA +L +G +H ++ K ++ V LI Y + G
Sbjct: 1027 DEITVASVLSACAHIGALD---VGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGL 1083
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VF++M R S +W ++I G A +AL LF ML + GV+PT T V VL
Sbjct: 1084 SVFEEMGKRDSVSWTSVIAGLAVNG-----SADSALNLFSLMLRE--GVRPTHGTFVGVL 1136
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRM-RE 282
+ G+++ G ME+ + + PE + +VD+ S+ G L A RM +
Sbjct: 1137 LACAHAGVVDKGLEYFESMERVYGLTPEMKHY--GCVVDLLSRSGNLGRAYEFIKRMPMD 1194
Query: 283 KNVLTWTAMATGMAIHG 299
+V+ W + + +HG
Sbjct: 1195 PDVVVWRILLSASQVHG 1211
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 245/470 (52%), Gaps = 30/470 (6%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
F LL P + HA L L++ + + P + + VF
Sbjct: 121 FLLLAAARAPEPPFARSAHALLCRLGLQAHDHTVHSLVTMYSNLGDPLAAR---RVFDGI 177
Query: 70 DPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
++ +N ++ R D +F + +G + ++ T L +C L
Sbjct: 178 PRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACR---DAGDL 234
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LGR + V LV + L+ Y +++ ++VFD + + WNAMI GY
Sbjct: 235 VLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGY 294
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-E 244
+Q+ +K+ A+ LF M + G P T+V VLS + +G LE G + Y
Sbjct: 295 -AQNGMSKE----AIALFHSMRQE--GASPDKITLVGVLSACAAVGALELGTELDAYASH 347
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ Y +V++GTALVDMYSKCG LD A+ +F ++ KN TW A+ G+A +G+G+EA
Sbjct: 348 RGLY---GNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNGRGHEA 404
Query: 305 IRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
IR + MR + G++P+ +TF + +AC HAGL+++G F+++ S++ + P I+HYSC+V
Sbjct: 405 IRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEHYSCMV 464
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLL RAGHLEEA++F+ IP K DA++ +LL+AC +V + E+V ++QL+P
Sbjct: 465 DLLARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLEPS--- 521
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S ++V S IYAS++R D +R M+ + V PG S ++ +
Sbjct: 522 -----NSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSKIPGCSWVEVS 566
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 195/416 (46%), Gaps = 27/416 (6%)
Query: 22 SHIKQIHAQLI--TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
S +KQ+HA ++ + + P Y + T +S + + P F +N
Sbjct: 28 SAMKQLHAHILHLNHHRRRPFPYNHFLSKLLTLSSSAAAADYALLLLAAHPAPTAFSYNV 87
Query: 80 LIR---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
+R T P+ ++ +F + + L D +T F L + AR R H +
Sbjct: 88 TLRFFASTRPRTALRLFLRML-RAALRPDAYTLPFLLLAAARAPEPP---FARSAHALLC 143
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
+ G + +L+ Y++ D + ++VFD +P R +WNAM+ Y ++ A D A
Sbjct: 144 RLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAY-ERAGMAADVA 202
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV-- 254
+FRDM +D V P + T+ VL+ G L G ++E+ E +V
Sbjct: 203 R----MFRDM-IDEGAVAPNEVTVAVVLAACRDAGDLVLGR----WLEEWVRSAEIEVGS 253
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
+G+ALV MY KCG + A +F + K+V+ W AM TG A +G EAI L SMR
Sbjct: 254 LVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQE 313
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G P+ +T + +AC G +E G L D S G+ ++ + +VD+ + G L++
Sbjct: 314 GASPDKITLVGVLSACAAVGALELGTEL-DAYASHRGLYGNVYVGTALVDMYSKCGDLDK 372
Query: 375 AYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGE-KVGKILLQLQP-EVTFVDV 426
A +P K +A W +L+ A N G A+ + +V + L+P ++TF+ V
Sbjct: 373 AVQVFGKLPCKNEAT-WNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGV 427
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 209/390 (53%), Gaps = 26/390 (6%)
Query: 77 FNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+NT+I RC P ++ F V K + DD T + AL + A+ +GR H
Sbjct: 28 WNTIISGYLRCGMPNKALQAFGQMV-KEPVRLDDVTLLNALVASAKAGKAK---VGRLCH 83
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
V G N + ++LI YA + +KVF M R+ W +MI+GY K
Sbjct: 84 SLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFK 143
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
K A+ LFRDM ++G+K D T+ V+S +Q+G L+ G VH Y + +
Sbjct: 144 K-----AVDLFRDM--QITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCD--VHGLGK 194
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
++ + +L+DMYSKCG + A IF + +++V +WTAM G ++G NEA+ L M
Sbjct: 195 ELSVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQME 254
Query: 313 DCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
G V PN VTF + +C H GLVE+G H F M + + P I+HY C+VDLLGRA
Sbjct: 255 GEGKVMPNEVTFLGVLTSCSHGGLVEQGFHHFQRMSMVYNLAPRIEHYGCMVDLLGRAKL 314
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L EA FI G+PI PD ++WRSLL AC G+V L E V + +L+L+P+ C
Sbjct: 315 LTEAEQFINGMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPK------KCAGH 368
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRV 461
V LSN+YA+ RW DV +R M R+
Sbjct: 369 --VLLSNVYAATSRWVDVNKLRTSMDSCRM 396
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 209/388 (53%), Gaps = 36/388 (9%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D F L SC S L GRQ+H + K + V LI YA + + K
Sbjct: 352 DGFACTSVLTSCG---SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAK 408
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVFD M ++ ++NAMI GY SQ K ++ AL LF +M V + KP + T ++
Sbjct: 409 KVFDVMAEQNVISYNAMIEGYSSQEKLSE-----ALELFHEMRVRLQ--KPNEFTFAALI 461
Query: 225 SVSSQLGLLEFGACVHGYMEKTF--YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+ +S L L G H + K + P F+ ALVDMY+KCG ++ A +F+
Sbjct: 462 TAASNLASLRHGQQFHNQLVKMGLDFCP----FVTNALVDMYAKCGSIEEARKMFNSSIW 517
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++V+ W +M + A HG+ EA+ + M G++PN VTF ++ +AC HAG VE+GL+
Sbjct: 518 RDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNH 577
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F++M +G++P +HY+C+V LLGR+G L EA FI +PI+P AI+WRSLLSAC + G
Sbjct: 578 FNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAG 636
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+V LG+ ++ + P+ S ++ LSNI+AS W DV+ VR +M V
Sbjct: 637 NVELGKYAAEMAISTDPK--------DSGSYILLSNIFASKGMWADVKKVRDRMDSSEVV 688
Query: 463 TEPGSS-----------ILQTTTHYTLD 479
EPG S I + TTH D
Sbjct: 689 KEPGRSWIEVNNKVNVFIARDTTHREAD 716
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 185/396 (46%), Gaps = 32/396 (8%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKG 100
LI Y +K + + ++V F + T+I +C S+ +FA
Sbjct: 192 LIDFY-SKNGNIEEARLV---FDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 247
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
++ D + L +C+ L L G+QIH +V +RG +V V LI FY +
Sbjct: 248 VVP-DRYVVSSVLSACSM---LEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRV 303
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+G+K+FDQM +++ +W MI+GY S + A+ LF +M + G KP
Sbjct: 304 KAGRKLFDQMVVKNIISWTTMISGYMQNS-----FDWEAMKLFGEM--NRLGWKPDGFAC 356
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VL+ LE G VH Y K E+D F+ L+DMY+K L +A +F M
Sbjct: 357 TSVLTSCGSREALEQGRQVHAYTIKANL--ESDEFVKNGLIDMYAKSNLLIDAKKVFDVM 414
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
E+NV+++ AM G + K +EA+ L MR KPN TF +L A + + G
Sbjct: 415 AEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHG- 473
Query: 341 HLFDNMKSKWGVE--PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
F N K G++ P + + +VD+ + G +EEA + I D + W S++S
Sbjct: 474 QQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARK-MFNSSIWRDVVCWNSMISTH 530
Query: 399 NVHGDV--ALGEKVGKILLQLQPE-VTFVDV--ACT 429
HG+ ALG + +QP VTFV V AC+
Sbjct: 531 AQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACS 566
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 162/345 (46%), Gaps = 23/345 (6%)
Query: 5 PGHRCFA-LLKLKAITTPS-HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIV 62
P R FA LL+L P H K IH Q+I + L+S A ++ C+K + ++V
Sbjct: 47 PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 106
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
F NL +++++ Q ++++VF K + F L S R
Sbjct: 107 ---FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKS----GEHPNEFVLASVIR 159
Query: 119 FCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
C+ L + G Q+H V + GF +V V T+LI FY+ N +I + VFDQ+ +++ T
Sbjct: 160 ACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVT 219
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
W +I GY + A +L LF M + V P + VLS S L LE G
Sbjct: 220 WTTIIAGYTKCGRSAV-----SLELFAQM--RETNVVPDRYVVSSVLSACSMLEFLEGGK 272
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+H Y+ + E DV + L+D Y+KC + +F +M KN+++WT M +G
Sbjct: 273 QIHAYVLRR--GTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQ 330
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+ EA++L M G KP+ TS+ +C +E+G +
Sbjct: 331 NSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQV 375
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 138/267 (51%), Gaps = 10/267 (3%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH + G + +A LI+ + + + + + VFD+MP ++ TW++M++ Y Q
Sbjct: 71 IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ AL++F D L SG P + + V+ +QLG++E GA +HG++ ++ +
Sbjct: 131 SEE-----ALMVFVD-LQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGF-- 182
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ DV++GT+L+D YSK G ++ A L+F ++ EK +TWT + G G+ ++ L
Sbjct: 183 DQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQ 242
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
MR+ V P+ +S+ +AC +E G + + + G E + + ++D +
Sbjct: 243 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRR-GTEMDVSVVNVLIDFYTKCN 301
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSA 397
++ + +K + I W +++S
Sbjct: 302 RVKAGRKLFDQMVVK-NIISWTTMISG 327
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 43/246 (17%)
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL-LD 309
++D F+ L+++ SK +DNA ++F +M KN++TW++M + + G EA+ + +D
Sbjct: 81 QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 140
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
R G PN S+ AC G+VE+G L + G + + + ++D +
Sbjct: 141 LQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLH-GFVVRSGFDQDVYVGTSLIDFYSKN 199
Query: 370 GHLEEAY---------------NFIMG-------------------IPIKPDAILWRSLL 395
G++EEA I G + PD + S+L
Sbjct: 200 GNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVL 259
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
SAC++ + G+++ +L+ E +DV+ + L + Y R + Q
Sbjct: 260 SACSMLEFLEGGKQIHAYVLRRGTE---MDVSVVN----VLIDFYTKCNRVKAGRKLFDQ 312
Query: 456 MKVKRV 461
M VK +
Sbjct: 313 MVVKNI 318
>gi|255564460|ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537522|gb|EEF39147.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 488
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/459 (32%), Positives = 246/459 (53%), Gaps = 29/459 (6%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCT-KKASPQSTKIVHFVFTHFDPPNLFLFNT 79
+H++ +HA+L+ +L + L ++L+ +Y + +P S F H N++ +N
Sbjct: 51 THLRHLHARLLRTSLYDNVVLSSKLVLMYSHHNRLTPHSLS----TFFHMPCKNIYSWNI 106
Query: 80 LI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+I R P+ SV +F DDF+ L +CA LG +H
Sbjct: 107 IIGEFARSNLPEKSVDLFIDMRRDSHFQPDDFSLPLVLRACA---GSGLGKLGSSVHGLC 163
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K G ++ V + L+ Y + ++S+ + VFD+M R S W A+++GY +Q+ + K
Sbjct: 164 VKMGLAVSLFVGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGY-AQNGEPKL- 221
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
L +FR+M+ + + VK MV +L V QLG L+ G VHG+ + E +
Sbjct: 222 ---GLQVFREMVDNSTRVKLDWVVMVSLLLVCGQLGSLKHGKSVHGWCVRNCLRLE--LS 276
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+G A+V MY KCG L A F +M E++V +W+++ G + G + A+ L D M G
Sbjct: 277 LGNAIVHMYIKCGMLAYAHRFFDKMPERDVFSWSSLILGYGLSGNVSVALCLFDQMHMRG 336
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KPN VTF + +AC H GLVE+ F M++ +G+ ++HY+ IVD L RAG EEA
Sbjct: 337 IKPNDVTFLGILSACGHGGLVEQARSYFKMMQN-YGLVAELRHYATIVDCLARAGRFEEA 395
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
FI IP++PD + ++L+ C VH +V +GE++ K L++L+PE + +V
Sbjct: 396 EKFISDIPMEPDEAVLGAILAGCRVHNNVEVGERIAKRLIRLKPE--------KAGYYVL 447
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
L+N+YA R+ + E VR M+ K + PG S+L++ +
Sbjct: 448 LANMYAGVGRFHEAEMVRDSMQEKNMSKVPGCSLLESKS 486
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 235/456 (51%), Gaps = 29/456 (6%)
Query: 24 IKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
+++IH L L+ + + + L+ Y + + K VF ++ L+N +I
Sbjct: 93 VRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTEDAEK----VFEELPERDVVLWNAMIN 148
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ +V+VF +G+ + FT L + S+ + GR IH VTK
Sbjct: 149 GYTKIGHLNKAVVVFKRMGEEGI-SLSRFTTTSIL---SILTSMGDINNGRAIHGIVTKM 204
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G+ V V+ LI Y K +F+ + + +WN++I+ + + D
Sbjct: 205 GYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISAH-----EQCDDHDG 259
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPEN--DVF 255
L LF ML S V P T+ VL S L L G +HGYM EN DV
Sbjct: 260 TLRLFGKMLG--SRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKNENGDDVL 317
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+ A++DMY+KCGC+ NA +IF MR K+V +W M G A+HG G EA+ + M +
Sbjct: 318 LNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQ 377
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+KP+ VTF + +AC HAG V +G M+ ++GV P I+HY+CI+D+LGRAGHL EA
Sbjct: 378 IKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEA 437
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y+ IP++ + ILW +LL AC +HG+ LG VG+ + QL+P+ C S ++
Sbjct: 438 YDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPK------HCGSGSYIL 491
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+S++Y R+ + VR+ MK + V+ PG S ++
Sbjct: 492 MSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIE 527
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 116/454 (25%), Positives = 192/454 (42%), Gaps = 79/454 (17%)
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDSVLVF----------------AYWVSKGL-------- 101
F H L N RC +++VLVF A +V+ GL
Sbjct: 6 FIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFY 65
Query: 102 -------LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY 154
+ D FT+ + +C F + R+IH + K G NV V + L++ Y
Sbjct: 66 KRMRSVGVMPDKFTFPCVVRACCEFMEV------RKIHGCLFKMGLELNVFVGSALVNTY 119
Query: 155 ASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214
+KVF+++P R WNAMINGY K A+V+F+ M G+
Sbjct: 120 LKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNK-----AVVVFKRM--GEEGIS 172
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
+ T +LS+ + +G + G +HG + K Y + V + AL+DMY KC ++AL
Sbjct: 173 LSRFTTTSILSILTSMGDINNGRAIHGIVTKMGY--SSCVAVSNALIDMYGKCKHTEDAL 230
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+IF + EK++ +W ++ + + +RL M V P+ +T T++ AC H
Sbjct: 231 MIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLA 290
Query: 335 LVEEGLHLFDNM------KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
+ G + M K++ G + + + I+D+ + G ++ A + I + D
Sbjct: 291 ALMHGREIHGYMIVNGLGKNENGDDVLLN--NAIMDMYAKCGCMKNA-DIIFDLMRNKDV 347
Query: 389 ILWRSLLSACNVH--GDVALGEKVGKILLQLQPE-VTFVDV--ACTSEDFVALSNIYASA 443
W ++ +H G AL Q++P+ VTFV V AC+ FV +
Sbjct: 348 ASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSF--- 404
Query: 444 ERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477
+ R+E E G ++ T HYT
Sbjct: 405 --------------LTRMELEFG--VIPTIEHYT 422
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/367 (33%), Positives = 206/367 (56%), Gaps = 18/367 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H + G N+ + LI Y+ ++ +
Sbjct: 234 DESTMVTVVSACAQSGSIQ---LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETAC 290
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F + + +WN MI GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 291 GLFQGLSNKDVISWNTMIGGYTHLNLYKE-----ALLLFQEMLR--SGENPNDVTMLSIL 343
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+QLG ++FG +H Y++K N + T+L+DMY+KCG ++ A +F+ M +
Sbjct: 344 PACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRT 403
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ AM G A+HG+ N A + MR G++P+ +TF L +AC H+G+++ G +F
Sbjct: 404 LSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFR 463
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M + + P ++HY C++DLLG G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 464 SMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNV 523
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE +V LSNIYA+A RW +V ++R + K ++
Sbjct: 524 ELGESFAQKLIKIEPE--------NPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKV 575
Query: 465 PGSSILQ 471
PG S ++
Sbjct: 576 PGCSSIE 582
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 212/468 (45%), Gaps = 85/468 (18%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T ++ IHAQ+I L + + +C + VF PNL ++NT
Sbjct: 14 TLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNT 73
Query: 80 LIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ R + P ++ ++ +S GLL + +T+ F L SCA+ L G+QIH HV
Sbjct: 74 MFRGHALSSDPVSAIKLYVCMISLGLLP-NSYTFPFLLKSCAK---LKVSKEGQQIHGHV 129
Query: 136 TKRGFMFNVLVATTLIHFYASN---KD----------------------------ISSGK 164
K G+ ++ V T+LI Y N KD I S +
Sbjct: 130 LKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQ 189
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+FD++P++ +WNA+I+GY + AL LF++M+ + VKP ++TMV V+
Sbjct: 190 KMFDEIPVKDVVSWNAIISGYADTGNNKE-----ALDLFKEMM--KTNVKPDESTMVTVV 242
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +Q G ++ G VH +++ + +++ I AL+D+YSKCG ++ A +F + K+
Sbjct: 243 SACAQSGSIQLGRQVHSWIDD--HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHL 342
V++W M G EA+ L M G PN VT S+ AC G ++ G +H+
Sbjct: 301 VISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHV 360
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN---------------FIMGIP---- 383
+ + + K GV + ++D+ + G +E A+ I G
Sbjct: 361 YIDKRIK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGR 419
Query: 384 ---------------IKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
I+PD I + LLSAC+ G + LG ++ + + Q
Sbjct: 420 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQ 467
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 214/373 (57%), Gaps = 21/373 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGR +H + GF N+ + LI Y+ ++ +
Sbjct: 221 DESTMVTVVSACAQSDSIE---LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETAC 277
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++FD + + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 278 ELFDGLWNKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGETPNDVTMLSIL 330
Query: 225 SVSSQLGLLEFGACVHGYMEKTFY-MPENDVFIGTALVDMYSKCGCLDNALLIF-SRMRE 282
+ LG ++ G +H Y+ K + N + T+L+DMY+KCG +D A +F S M
Sbjct: 331 PACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSN 390
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+++ TW AM +G A+HG+ N A + MR G++P+ +TF L +AC H+G+++ G ++
Sbjct: 391 RSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNI 450
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F +M + + P ++HY C++DLLG +G +EA I +P++PD ++W SLL AC +HG
Sbjct: 451 FRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHG 510
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ LGE K L++++P S +V LSNIYA+A RW +V +R + K ++
Sbjct: 511 NLELGESFAKKLIKIEP--------GNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMK 562
Query: 463 TE-PGSSILQTTT 474
+ PG S ++ +
Sbjct: 563 KKVPGCSSIEIDS 575
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/467 (27%), Positives = 217/467 (46%), Gaps = 55/467 (11%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
S ++ IHAQ+I L + + +C VF PNL ++NT+
Sbjct: 2 SSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61
Query: 82 R----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + P ++ ++ +S GLL D +T+ F L SCA+ G+QIH HV K
Sbjct: 62 RGHALSSDPVSALKLYLVMISLGLLP-DSYTFPFLLKSCAKSKIRKE---GQQIHGHVLK 117
Query: 138 RGFMFNVLVATTLIHFYASNK---------DIS----------------------SGKKV 166
GF ++ V T+LI YA N DIS S +K+
Sbjct: 118 LGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKL 177
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD++P + +WNAMI+GY + AL LF++M++ ++ V+P ++TMV V+S
Sbjct: 178 FDEIPGKDVVSWNAMISGYVETGNYKE-----ALELFKEMMM-MTNVRPDESTMVTVVSA 231
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+Q +E G VH ++ + +++ I AL+D+YSK G ++ A +F + K+V+
Sbjct: 232 CAQSDSIELGRHVHSWINDHGF--ASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVI 289
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFD 344
+W + G EA+ L M G PN VT S+ AC H G ++ G +H++
Sbjct: 290 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 349
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
N K K V + ++D+ + G ++ A W +++S +HG
Sbjct: 350 NKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRA 409
Query: 405 -ALGEKVGKILLQ-LQP-EVTFVDV--ACTSEDFVALS-NIYASAER 445
A + ++ + ++P ++TFV + AC+ + L NI+ S R
Sbjct: 410 NAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTR 456
>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
Length = 470
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 233/434 (53%), Gaps = 25/434 (5%)
Query: 26 QIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCT 84
Q HA+ + L L L+ LYC ++ + VF P++ +N L+ +
Sbjct: 27 QAHARAVVGGWLPDATLETDLVLLYCRCGERERARR----VFDRMPAPSMHAYNVLLAAS 82
Query: 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKRGFMFN 143
PP+ ++ +F+ LL D +++ + R C+ L LG IH + G M N
Sbjct: 83 PPRYAMEIFSR-----LLAADLLPDRYSVPAMVRACTELPDAVLGAVIHGFAVRLGLMAN 137
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
V+VA + YA + +VFD+MP R + WN M+ GY + A+ F+ +F
Sbjct: 138 VVVAAAFLDMYAKAVLLDDAVRVFDEMPERDAIVWNCMVTGYARAGRAAE--TFD---IF 192
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
V+ + + VL++ ++ L G +HG M + ++D+ +G AL++M
Sbjct: 193 SRAQVEAVNIVNGLQAVPSVLNICAKESELMKGREIHGMMVRCLAF-DSDIAVGNALINM 251
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y+KCG ++ + +FS M+E++V++W+ M +IHGKG +A+++ M GVKPN +TF
Sbjct: 252 YAKCGRVNVSQAVFSGMQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPNWITF 311
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
TS+ ++C H+GLV EG +F++M GV P +HY+C+VDLLGRAG +EEA I +P
Sbjct: 312 TSVLSSCSHSGLVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKMP 371
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
++P A +W +LLSAC +H +V +GE L +L+ ++ ++V L IY +
Sbjct: 372 MEPCASVWGALLSACAMHNNVDVGEIAAFRLFELEEG--------SASNYVTLCGIYDAV 423
Query: 444 ERWPDVESVRKQMK 457
+ V +R +M+
Sbjct: 424 GQSDGVAGLRSRMR 437
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 125/292 (42%), Gaps = 19/292 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q H G++ + + T L+ Y + ++VFD+MP S +N ++
Sbjct: 25 GAQAHARAVVGGWLPDATLETDLVLLYCRCGERERARRVFDRMPAPSMHAYNVLL----- 79
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
A A+ +F +L + + P ++ ++ ++L GA +HG+ +
Sbjct: 80 ----AASPPRYAMEIFSRLL--AADLLPDRYSVPAMVRACTELPDAVLGAVIHGFAVRLG 133
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
M +V + A +DMY+K LD+A+ +F M E++ + W M TG A G+ E +
Sbjct: 134 LMA--NVVVAAAFLDMYAKAVLLDDAVRVFDEMPERDAIVWNCMVTGYARAGRAAETFDI 191
Query: 308 LD--SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+ + S+ C + +G + M + I + ++++
Sbjct: 192 FSRAQVEAVNIVNGLQAVPSVLNICAKESELMKGREIHGMMVRCLAFDSDIAVGNALINM 251
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
+ G + + G+ + D + W +++ + ++HG GE+ K+ +++
Sbjct: 252 YAKCGRVNVSQAVFSGMQER-DVVSWSTMIHSYSIHGK---GEQALKVYMEM 299
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 213/383 (55%), Gaps = 35/383 (9%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
F+ T+ AL SLS L LG+QIH V K G + + V +LI Y ++
Sbjct: 518 FNKLTFSIAL---VLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKA 574
Query: 164 KKVFDQMPMRSS---------------ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
+F +P SS +W++M++GY Q+ + +D AL F M+
Sbjct: 575 SVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYV-QNGRFED----ALKTFSFMIC 629
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
S V+ T+ V+S + G+LE G VHGY++K + DVF+G++++DMY KCG
Sbjct: 630 --SQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGL--DVFLGSSIIDMYVKCG 685
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
L++A LIF++ +++NV+ WT+M +G A+HG+G EA+RL + M + G+ PN V+F +
Sbjct: 686 SLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLT 745
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC HAGL+EEG F M+ +G+ P +H++C+VDL GRAG L E FI I +
Sbjct: 746 ACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLS 805
Query: 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
+WRS LS+C VH ++ +G V K LL+L+P + ++ S+I A+ RW +
Sbjct: 806 SVWRSFLSSCRVHKNIEMGIWVCKKLLELEP--------FDAGPYILFSSICATEHRWEE 857
Query: 449 VESVRKQMKVKRVETEPGSSILQ 471
+R M+ + V+ P S +Q
Sbjct: 858 AAKIRSLMQQRGVKKNPSQSWIQ 880
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/451 (23%), Positives = 203/451 (45%), Gaps = 60/451 (13%)
Query: 27 IHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----R 82
+HA+LI N L+ LY A Q+ + H +F ++F + LI R
Sbjct: 310 LHAKLIKNGCVGIR-GNHLLNLY----AKSQNLEQAHKMFEEIPQTDVFSWTVLISGFAR 364
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
D + +F +G+ + FT L SC+ + S + G+ IH + + G
Sbjct: 365 IGLSADVLGLFTKMQDQGVCP-NQFTLSIVLKSCSSNVNDSRI--GKGIHGWILRNGLDL 421
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-----------QSKK 191
+ ++ +++ +Y + +K+F M + + +WN M++ Y +
Sbjct: 422 DAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLP 481
Query: 192 AKDCA-FNALV--LFR--------DMLVDVSGVKP--TDTTMVCVLSVSSQLGLLEFGAC 238
KD A +N ++ L R ++L + P T L ++S L +L G
Sbjct: 482 GKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQ 541
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL------------ 286
+H + K + +D F+ +L+DMY KCG ++ A +IF + +++ +
Sbjct: 542 IHTQVLKVGVL--DDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVV 599
Query: 287 ---TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+W++M +G +G+ +A++ M V+ + T TS+ +AC AG++E G +
Sbjct: 600 ESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVH 659
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++ K G + S I+D+ + G L +A+ I + +LW S++S C +HG
Sbjct: 660 GYIQ-KIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQ 717
Query: 404 VALGEKVGKILLQ--LQP-EVTFVDV--ACT 429
++ ++++ + P EV+FV V AC+
Sbjct: 718 GREAVRLFELMINEGITPNEVSFVGVLTACS 748
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 196/362 (54%), Gaps = 39/362 (10%)
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
KR +NV++A YA K + G+++F++MP + +WN MI+GYC A+
Sbjct: 279 KREMSYNVMIAG-----YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARN 333
Query: 197 FNALVLFRD----------------------MLVDV--SGVKPTDTTMVCVLSVSSQLGL 232
++ RD MLV++ G +T C LS + +
Sbjct: 334 LFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAA 393
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
LE G VHG + +T Y E +G ALV MY KCGC+D A +F ++ K++++W M
Sbjct: 394 LELGKQVHGQVVRTGY--EKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTML 451
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G A HG G +A+ + +SM GVKP+ +T + +AC H GL + G F +M +G+
Sbjct: 452 AGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGI 511
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
P+ KHY+C++DLLGRAG LEEA N I +P +PDA W +LL A +HG++ LGE+ +
Sbjct: 512 TPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAE 571
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ +++P S +V LSN+YA++ RW DV +R +M+ V+ PG S ++
Sbjct: 572 MVFKMEPH--------NSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEV 623
Query: 473 TT 474
Sbjct: 624 QN 625
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 20/228 (8%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ AL +CA ++ L LG+Q+H V + G+ LV L+ Y I VF
Sbjct: 380 TFCCALSACA---DIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVF 436
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ + +WN M+ GY AL +F M+ +GVKP + TMV VLS
Sbjct: 437 QGVQHKDIVSWNTMLAGYARHG-----FGRQALTVFESMI--TAGVKPDEITMVGVLSAC 489
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVL 286
S GL + G M K + + N ++D+ + GCL+ A + M E +
Sbjct: 490 SHTGLTDRGTEYFHSMNKDYGITPNSKHY-ACMIDLLGRAGCLEEAQNLIRNMPFEPDAA 548
Query: 287 TWTAMATGMAIHGK---GNEAIRLLDSMR--DCGVKPNAVTFTSLFAA 329
TW A+ IHG G +A ++ M + G+ V ++L+AA
Sbjct: 549 TWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGM---YVLLSNLYAA 593
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 19/199 (9%)
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFY---------MPENDVFIGTALVDMYSKCGCLD 271
+CV + + A + GY+ + MP D+F ++ Y++ L
Sbjct: 53 LCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLR 112
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+A ++F M EK+V++W AM +G G +EA + D M N++++ L AA
Sbjct: 113 DARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHKNSISWNGLLAAYV 168
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+G +EE LF++ KS W + +C++ + L +A IP++ D I W
Sbjct: 169 RSGRLEEARRLFES-KSDW----ELISCNCLMGGYVKRNMLGDARQLFDQIPVR-DLISW 222
Query: 392 RSLLSACNVHGDVALGEKV 410
+++S GD++ ++
Sbjct: 223 NTMISGYAQDGDLSQARRL 241
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 115/275 (41%), Gaps = 16/275 (5%)
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+ ++ L+ Y + +++FDQ+P+R +WN MI+GY ++
Sbjct: 186 WELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEES 245
Query: 202 LFRDMLVDVSGVKPTDTTMVC-----VLSVSSQLGLLEFGACVHGY-------MEKTFY- 248
RD+ + V + V Q + + + GY M + +
Sbjct: 246 PVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFE 305
Query: 249 -MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
MP ++ ++ Y + G L A +F M +++ ++W A+ G A +G EA+ +
Sbjct: 306 EMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNM 365
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
L M+ G N TF +AC +E G + + + G E + +V +
Sbjct: 366 LVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQV-VRTGYEKGCLVGNALVGMYC 424
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G ++EAY+ G+ K D + W ++L+ HG
Sbjct: 425 KCGCIDEAYDVFQGVQHK-DIVSWNTMLAGYARHG 458
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS--KKAKDCAFNAL-----VLFRDM 206
YA N+ + + +FD MP + +WNAM++GY +A+D F+ + + + +
Sbjct: 105 YARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARD-VFDRMPHKNSISWNGL 163
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF---------YMPENDVFIG 257
L + + S L+ + GY+++ +P D+
Sbjct: 164 LAAYVRSGRLEEARR-LFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISW 222
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
++ Y++ G L A +F ++V TWTAM G +EA R+ D M +
Sbjct: 223 NTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM----PQ 278
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
+++ + A ++ G LF+ M P+I ++ ++ + G L +A N
Sbjct: 279 KREMSYNVMIAGYAQYKRMDMGRELFEEMPF-----PNIGSWNIMISGYCQNGDLAQARN 333
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+P + D++ W ++++ +G L E+ +L++++ +
Sbjct: 334 LFDMMPQR-DSVSWAAIIAGYAQNG---LYEEAMNMLVEMKRD 372
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 122/298 (40%), Gaps = 52/298 (17%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK--------- 193
+V+ ++ Y + + + VFD+MP ++S +WN ++ Y + +
Sbjct: 125 DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKS 184
Query: 194 -------DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME-- 244
+C V R+ML D + D V L+ + + GY +
Sbjct: 185 DWELISCNCLMGGYVK-RNMLGDARQL--FDQIPV--------RDLISWNTMISGYAQDG 233
Query: 245 ------KTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+ F P DVF TA+V Y + G LD A +F M +K +++ M G A
Sbjct: 234 DLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQ 293
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
+ + + L + M PN ++ + + C G + + +LFD M + V
Sbjct: 294 YKRMDMGRELFEEM----PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVS---- 345
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA-ILWRSL----LSACNVHGDVALGEKV 410
++ I+ + G EEA N + + +K D L RS LSAC + LG++V
Sbjct: 346 -WAAIIAGYAQNGLYEEAMNML--VEMKRDGESLNRSTFCCALSACADIAALELGKQV 400
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
VFD MP+R+S ++NAMI+GY +K L RD L D K + + +
Sbjct: 55 VFDAMPLRNSVSYNAMISGYLRNAK---------FSLARD-LFDKMPHKDLFSWNLMLTG 104
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ L + MPE DV A++ Y + G +D A +F RM KN
Sbjct: 105 YARNRRLRDARMLFDS-------MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNS 157
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++W + G+ EA RL +S D + ++ L ++ + LFD
Sbjct: 158 ISWNGLLAAYVRSGRLEEARRLFESKSDWEL----ISCNCLMGGYVKRNMLGDARQLFDQ 213
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + + ++ ++ + G L +A P++ D W +++ A
Sbjct: 214 IPVR-----DLISWNTMISGYAQDGDLSQARRLFEESPVR-DVFTWTAMVYA 259
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 214/397 (53%), Gaps = 46/397 (11%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNVLVATTLIHFYASNKDISSG 163
+ T++ L +CA F S + + +H + K G +V+V T LI Y+ +
Sbjct: 91 NHITFITLLSACADFPS-ESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHA 149
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSK-----------KAKDC---------------AF 197
+KVF + +++S +WN M+NG+ + +D +
Sbjct: 150 RKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSE 209
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE---NDV 254
AL F M SGV +++ VL+ + LG L G VH F MP+ +++
Sbjct: 210 QALECFHQM--QRSGVAADYVSIIAVLAACADLGALTLGLWVH-----RFVMPQEFKDNI 262
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
I +L+DMYS+CGC++ A +F +M ++ +++W ++ G A++G +E++ +M+
Sbjct: 263 KISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKE 322
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G KP+ V++T AC HAGLV +GL LFDNMKS + P I+HY CIVDL GRAG LE+
Sbjct: 323 GFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLED 382
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A N I +P+KP+ ++ SLL+AC HGDV L E++ K L +L PE +V
Sbjct: 383 ALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPE--------GDAYYV 434
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA+ +W +VR+ MK + V+ +PG S ++
Sbjct: 435 LLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVE 471
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 151/370 (40%), Gaps = 92/370 (24%)
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF-- 235
W + + YC + ++ A F M ++GV+P T + +LS + F
Sbjct: 60 WTSSLARYCRNGQLSE-----AAAEFTRM--RLAGVEPNHITFITLLSACADFPSESFFF 112
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKC---------------------------- 267
+ +HGY K + + V +GTAL+DMYSKC
Sbjct: 113 ASSLHGYACK-YGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGF 171
Query: 268 ---GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
G ++ A+ +F M ++ ++WTA+ G+ HG +A+ M+ GV + V+
Sbjct: 172 MRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSII 231
Query: 325 SLFAACCHAGLVEEGL--HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY------ 376
++ AAC G + GL H F M ++ + +IK + ++D+ R G +E A
Sbjct: 232 AVLAACADLGALTLGLWVHRF-VMPQEF--KDNIKISNSLIDMYSRCGCIEFARQVFVKM 288
Query: 377 ---------NFIMGIPI-------------------KPDAILWRSLLSACNVHGDVALGE 408
+ I+G + KPD + + L+AC+ G V G
Sbjct: 289 AKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGL 348
Query: 409 KV---GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
++ K + ++ P + E + + ++Y A R D ++ ++M +K E
Sbjct: 349 ELFDNMKSVHKITPRI---------EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVL 399
Query: 466 GSSILQTTTH 475
GS + TH
Sbjct: 400 GSLLAACRTH 409
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++ WT+ +G+ +EA MR GV+PN +TF +L +AC A E
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSAC--ADFPSESFFFAS 114
Query: 345 NMKS---KWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
++ K+G++ H+ + ++D+ + L A + +K +++ W ++L+
Sbjct: 115 SLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVK-NSVSWNTMLNGFMR 173
Query: 401 HGDVAL 406
+G++ L
Sbjct: 174 NGEIEL 179
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 194/331 (58%), Gaps = 17/331 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+++ Y ++ + FDQMP+R +W MI+GY C +L +
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG-----CFNESLEI 355
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M +G+ P + TMV VL+ + LG LE G + Y++K +NDV +G AL+D
Sbjct: 356 FREM--QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN--KIKNDVVVGNALID 411
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCGC + A +F M +++ TWTAM G+A +G+G EAI++ M+D ++P+ +T
Sbjct: 412 MYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ + +AC H+G+V++ F M+S +EP + HY C+VD+LGRAG ++EAY + +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+ P++I+W +LL A +H D + E K +L+L+P+ V + L NIYA
Sbjct: 532 PMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV--------YALLCNIYAG 583
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+RW D+ VR+++ ++ PG S+++
Sbjct: 584 CKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 55/440 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T KQ+H+Q IT + P + +L +C++ S + +F P+
Sbjct: 41 LGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS--YAYKLFVKIPEPD 98
Query: 74 LFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ ++N +I+ D V ++ + +G+ T D T+ F L R L G+
Sbjct: 99 VVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGV-TPDSHTFPFLLNGLKR--DGGALACGK 155
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H HV K G N+ V L+ Y+ + + VFD+ +WN MI+GY
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY--NR 213
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
K + + LV LV PT T++ VLS S++ + VH Y+ +
Sbjct: 214 MKEYEESIELLVEMERNLVS-----PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTE 268
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK--------- 300
P + + ALV+ Y+ CG +D A+ IF M+ ++V++WT++ G G
Sbjct: 269 PS--LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFD 326
Query: 301 ----------------------GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
NE++ + M+ G+ P+ T S+ AC H G +E
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEI 386
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G K ++ + + ++D+ + G E+A + + D W +++
Sbjct: 387 G-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444
Query: 399 NVHGDVALGEKVGKILLQLQ 418
+G G++ K+ Q+Q
Sbjct: 445 ANNGQ---GQEAIKVFFQMQ 461
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ + +R +S+ +F S G++ D+FT V L +CA L +L +G I ++
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIP-DEFTMVSVLTACAH---LGSLEIGEWIKTYI 394
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K +V+V LI Y +KVF M R TW AM+ G + + +
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE-- 452
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A +DM ++P D T + VLS + G+++ M + + V
Sbjct: 453 AIKVFFQMQDM-----SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507
Query: 256 IGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
G +VDM + G + A I +M N + W A+ +H
Sbjct: 508 YG-CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLH 550
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/476 (31%), Positives = 235/476 (49%), Gaps = 22/476 (4%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTH 68
F L +++ P +Q+H +I ++ P + LI +YC + K+ F
Sbjct: 55 FILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKV--FEENP 112
Query: 69 FDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+N LI V A+ + T V LG LWLG
Sbjct: 113 HSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLG 172
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R +H K G V V + I Y + SG+++FD+MP++ TWNA+I+GY
Sbjct: 173 RSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQN 232
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
A++ L LF M SGV P T+V VLS + LG + G V +E +
Sbjct: 233 G-----LAYDVLELFEQM--KSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGF 285
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
P +VF+ AL+ MY++CG L A +F M K++++WTAM +HG G + L
Sbjct: 286 AP--NVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLF 343
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368
D M G++P+ F + +AC H+GL ++GL LF MK ++ +EP +HYSC+VDLLGR
Sbjct: 344 DDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGR 403
Query: 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
AG L+EA FI +P++PD +W +LL AC +H +V + E +++ +P +++
Sbjct: 404 AGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEP----MNIGY 459
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ--TTTHYTLDGFR 482
+V +SNIY+ ++ + +R M+ + +PG S ++ H L G R
Sbjct: 460 ----YVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDR 511
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 194/331 (58%), Gaps = 17/331 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+++ Y ++ + FDQMP+R +W MI+GY C +L +
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG-----CFNESLEI 355
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M +G+ P + TMV VL+ + LG LE G + Y++K +NDV +G AL+D
Sbjct: 356 FREM--QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN--KIKNDVVVGNALID 411
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCGC + A +F M +++ TWTAM G+A +G+G EAI++ M+D ++P+ +T
Sbjct: 412 MYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ + +AC H+G+V++ F M+S +EP + HY C+VD+LGRAG ++EAY + +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+ P++I+W +LL A +H D + E K +L+L+P+ V + L NIYA
Sbjct: 532 PMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV--------YALLCNIYAG 583
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+RW D+ VR+++ ++ PG S+++
Sbjct: 584 CKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 55/440 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T KQ+H+Q IT + P + + L +C++ S + +F P+
Sbjct: 41 LGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS--YAYKLFVKIPEPD 98
Query: 74 LFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ ++N +I+ D V ++ + +G+ T D T+ F L R L G+
Sbjct: 99 VVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGV-TPDSHTFPFLLNGLKR--DGGALACGK 155
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H HV K G N+ V L+ Y+ + + VFD+ +WN MI+GY
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY--NR 213
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
K + + LV LV PT T++ VLS S++ + VH Y+ +
Sbjct: 214 MKEYEESIELLVEMERNLVS-----PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTE 268
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK--------- 300
P + + ALV+ Y+ CG +D A+ IF M+ ++V++WT++ G G
Sbjct: 269 P--SLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFD 326
Query: 301 ----------------------GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
NE++ + M+ G+ P+ T S+ AC H G +E
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEI 386
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G K ++ + + ++D+ + G E+A + + D W +++
Sbjct: 387 G-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444
Query: 399 NVHGDVALGEKVGKILLQLQ 418
+G G++ K+ Q+Q
Sbjct: 445 ANNGQ---GQEAIKVFFQMQ 461
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ + +R +S+ +F S G++ D+FT V L +CA L +L +G I ++
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIP-DEFTMVSVLTACAH---LGSLEIGEWIKTYI 394
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K +V+V LI Y +KVF M R TW AM+ G + + +
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE-- 452
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A +DM ++P D T + VLS + G+++ M + + V
Sbjct: 453 AIKVFFQMQDM-----SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507
Query: 256 IGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
G +VDM + G + A I +M N + W A+ +H
Sbjct: 508 YG-CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLH 550
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 212/361 (58%), Gaps = 32/361 (8%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+C L + R+I + + NV+ T+++ Y + ++ +++F++ P++ W
Sbjct: 2 YCKCGCLSVARKIFDEMPHK----NVICWTSMVSGYVNYGELDKARELFERSPVKDVVLW 57
Query: 179 NAMINGYCSQSKKAKDCAFN----ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
AMINGY FN A+ LF++M + VKP +V +L+ +Q+G LE
Sbjct: 58 TAMINGYVQ---------FNHFDEAVALFQEM--QIQRVKPDKFVLVALLTGCAQMGALE 106
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G +HGY+++ +P D +GT+L++MYSKCGC++ AL IF +REK+ TWT++ G
Sbjct: 107 QGTWIHGYIDEKG-IP-VDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICG 164
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+A++GK ++A+ L M+ P+ VTF + +AC H GLVEEG F++M S + +EP
Sbjct: 165 LAMNGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEP 224
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVG 411
++HY C++DLLGRAG L+EA I I + I L+ SLLSAC ++ +V +GE+V
Sbjct: 225 KLEHYGCLIDLLGRAGQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVA 284
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ L++++ + V L+NIYASA RW DV VR++MK V+ PG S ++
Sbjct: 285 EQLVKIESRDSSV--------HTLLANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIE 336
Query: 472 T 472
Sbjct: 337 V 337
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 46/222 (20%)
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK---------------------- 300
MY KCGCL A IF M KNV+ WT+M +G +G+
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 301 ---------GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+EA+ L M+ VKP+ +L C G +E+G + + K G
Sbjct: 61 INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEK-G 119
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ + ++++ + G +E+A G+ K D W S++ ++G + ++
Sbjct: 120 IPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREK-DTATWTSIICGLAMNGKTSKALELF 178
Query: 412 KILLQLQP---EVTFVDV--ACT--------SEDFVALSNIY 440
+ Q++ EVTF+ V AC+ E F ++++IY
Sbjct: 179 SKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIY 220
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/330 (37%), Positives = 193/330 (58%), Gaps = 16/330 (4%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV+ T +I YA D++S + +FD+ P + W+A+I+GY + + A+ +
Sbjct: 232 NVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNE-----AVKI 286
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M+ VKP + MV ++S SQLG + V Y+ +T + + AL+D
Sbjct: 287 FFEMVS--MNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQT-SIDTRQAHVLAALID 343
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
M++KCG ++ A+ +F M ++++ ++ G++IHG+G EA+ L + M D G+ P+ V
Sbjct: 344 MHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVA 403
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
FT + AC GL+E+G H FD MK+K+ V P HY+C+VDLL RAG L AY+ + +
Sbjct: 404 FTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSM 463
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+KP A W +LL AC +HGDV L E+V LL+L+PE + +V LSNIYAS
Sbjct: 464 PLKPHACAWGALLGACKLHGDVELREEVANRLLELEPE--------KAGSYVLLSNIYAS 515
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQT 472
A +W DV VR +MK + + PG S + T
Sbjct: 516 ANQWLDVSIVRDEMKERGIRKIPGCSYIFT 545
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 173/396 (43%), Gaps = 35/396 (8%)
Query: 13 LKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP 72
L +K+ T H+ Q HA +I L+ + + ST I F P
Sbjct: 14 LLIKSCKTIPHLHQFHAHIIHKGLEQDHFI--ISHFLSISTSVSYSTSI----FNRLLNP 67
Query: 73 NLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
+ FL+N L++ D+ +F D +TY + C+ L G
Sbjct: 68 STFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKE---G 124
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+H + G +V V ++LI FY K+I S +KVFD++P R+ +W AM+ GY S
Sbjct: 125 EIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASV 184
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF- 247
NA +F M P+ M+ L + L GA K F
Sbjct: 185 GDLE-----NAKRVFERM---PERNLPSWNAMISGLGKAGDLS----GA------RKVFD 226
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
M E +V T ++D Y+K G + +A +F EK+V+ W+A+ +G + + + NEA+++
Sbjct: 227 EMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKI 286
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH-YSCIVDLL 366
M VKP+ SL +AC G + D+ S+ ++ H + ++D+
Sbjct: 287 FFEMVSMNVKPDEFIMVSLMSACSQLGNSDLA-KWVDSYLSQTSIDTRQAHVLAALIDMH 345
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G++E+A +P + D I SL+ ++HG
Sbjct: 346 AKCGNMEKAVKLFQDMPSR-DLIPCCSLIQGLSIHG 380
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 212/397 (53%), Gaps = 44/397 (11%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D TY F + +R LG IH HV K GF + VA +LIH Y S DI +
Sbjct: 9 DHLTYPFLAKATSRLLRKE---LGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYAR 65
Query: 165 KVFDQMPMRSSATWNAMINGY-------------------------CSQSKKAKDCAF-N 198
KVFD P+++ +WN+M++GY C AK + +
Sbjct: 66 KVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGD 125
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A+ +F M SG K + TMV VL + LG L+ G +H Y+ + E ++ + T
Sbjct: 126 AMAVFEKM--RTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGF--ELNLVLRT 181
Query: 259 ALVDMYSKCGCLDNALLIFS--RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
+L+DMY+KCG ++ A +F +R+ +VL W AM G+A HG E++ L M+ G+
Sbjct: 182 SLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGI 241
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KP+ +TF L +AC H GLV++ ++F+ + K G+ P +HY+C+VD++ RAG + EAY
Sbjct: 242 KPDEITFLCLLSACAHGGLVKQASYVFEGL-GKNGMTPKTEHYACMVDVMARAGQVAEAY 300
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
F+ +P++P A + +LLS C HG + L E +GK L++L PE +V L
Sbjct: 301 QFLCQMPLEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPE--------HDGRYVGL 352
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
SN+YA RW + +R+ M+ + V+ PG S L+ +
Sbjct: 353 SNVYAIGRRWDEARIMREAMERRGVKKTPGYSFLEMS 389
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 39/227 (17%)
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE-------------------- 251
G+ P T + +S+L E G +HG++ K+ + +
Sbjct: 5 GIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYA 64
Query: 252 NDVFIGT---------ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
VF GT ++VD Y+KCG LD A +F M E++V +W+ + G A G
Sbjct: 65 RKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYG 124
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL----HLFDNMKSKWGVEPHIKH 358
+A+ + + MR G K N VT S+ AC H G +++G +L DN G E ++
Sbjct: 125 DAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDN-----GFELNLVL 179
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPI-KPDAILWRSLLSACNVHGDV 404
+ ++D+ + G +EEA+ G+ + K D ++W +++ HG V
Sbjct: 180 RTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLV 226
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/423 (32%), Positives = 221/423 (52%), Gaps = 23/423 (5%)
Query: 52 KKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFT 108
+ S S V +F +L +NT+I + L + L D FT
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241
Query: 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
L A +S G++IH ++G ++ VA++LI YA ++ +VF
Sbjct: 242 LSSVLPLIAENVDISR---GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFT 298
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ R +WN++I G C Q+ + L FR ML+ + +KP + ++ +
Sbjct: 299 LLTERDGISWNSIIAG-CVQNGLFDE----GLRFFRQMLM--AKIKPKSYSFSSIMPACA 351
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L L G +HGY+ + + + ++FI ++LVDMY+KCG + A IF RMR +++++W
Sbjct: 352 HLTTLHLGKQLHGYITRNGF--DENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSW 409
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
TAM G A+HG+ +AI L + M G+KPN V F ++ AC H GLV+E F++M
Sbjct: 410 TAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTR 469
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+G+ P ++HY+ + DLLGRAG LEEAY+FI G+ I P +W +LLSAC VH ++ + E
Sbjct: 470 DFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAE 529
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KV +L++ P T ++ L+NIY++A RW + R M+ + P S
Sbjct: 530 KVANRILEVDPNNTGA--------YILLANIYSAARRWKEAAKWRASMRRIGIRKTPACS 581
Query: 469 ILQ 471
++
Sbjct: 582 WIE 584
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 96/423 (22%), Positives = 193/423 (45%), Gaps = 57/423 (13%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
+I + S +Q+HAQ++ S + L+ +Y S ++ F HF PP L
Sbjct: 18 SIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL--FNTIHF-PPAL-A 73
Query: 77 FNTLIRCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+ ++IRC P S+ F ++ GL D + L SCA L+ LG +H
Sbjct: 74 WKSVIRCYTSHGLPHQSLGSFIGMLASGLYP-DHNVFPSVLKSCALLMDLN---LGESLH 129
Query: 133 VHVTKRGFMFNVLVATTLIHFYA---------------------------SNKDIS---- 161
++ + G F++ L++ Y+ S + +S
Sbjct: 130 GYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSE 189
Query: 162 -SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLVDVSGVKPTDTT 219
S +K+F+ MP + +WN +I G A++ + L + R+M + +KP T
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAG------NARNGLYEETLRMIREM--GGANLKPDSFT 241
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+ VL + ++ + G +HG + + D+++ ++L+DMY+KC + ++ +F+
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGL--DADIYVASSLIDMYAKCTRVADSCRVFTL 299
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ E++ ++W ++ G +G +E +R M +KP + +F+S+ AC H + G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
L + ++ G + +I S +VD+ + G++ A + ++ D + W +++ C
Sbjct: 360 KQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCA 417
Query: 400 VHG 402
+HG
Sbjct: 418 LHG 420
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 200/391 (51%), Gaps = 41/391 (10%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D ++ + K + D L +CAR SL G+ +H ++ N+ V
Sbjct: 334 DGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDN---GKDVHDYIKANNMASNLFVC 390
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
L+ YA + VF M ++ +WN M
Sbjct: 391 NALMDMYAKCGSMEGANSVFSTMVVKDIISWNTM-------------------------- 424
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
V +KP TM C+L + L LE G +HGY+ + Y +D + ALVD+Y KC
Sbjct: 425 --VGELKPDSRTMACILPACASLSALERGKEIHGYILRNGY--SSDRHVANALVDLYVKC 480
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A L+F + K++++WT M G +HG GNEAI + MRD G++P+ V+F S+
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL+E+G F MK+ + +EP ++HY+C+VDLL R G+L +AY FI +PI PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 600
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A +W +LL C ++ D+ L EKV + + +L+PE T +V L+NIYA AE+
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGY--------YVLLANIYAEAEKRE 652
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +R+++ K + PG S ++ L
Sbjct: 653 EVKRMREKIGKKGLRKNPGCSWIEIKGRVNL 683
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 51/328 (15%)
Query: 114 GSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
GS + C+ L +L G+++H + + + L+ FYA+ D+ G++VFD M
Sbjct: 103 GSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEK 162
Query: 173 RSSATWNAMINGYCSQSK-KAKDCAFNALV--------------LFRDMLVDVS------ 211
++ WN M++ Y K C F +V LF D L D
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELF-DKLCDRDVISWNS 221
Query: 212 ------------------------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
G+ T++ VL + G L G VH K+
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E + L+DMYSKCG LD AL +F +M E+NV++WT+M G G + AI L
Sbjct: 282 F--ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
L M GVK + V TS+ AC +G ++ G + D +K+ + ++ + ++D+
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMASNLFVCNALMDMYA 398
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+ G +E A N + + D I W +++
Sbjct: 399 KCGSMEGA-NSVFSTMVVKDIISWNTMV 425
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 118/271 (43%), Gaps = 40/271 (14%)
Query: 50 CTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTF 104
C + S + K VH ++ + NLF+ N L+ +C + + VF+ V K ++++
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISW 421
Query: 105 ---------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
D T L +CA SLS L G++IH ++ + G+ + VA L+ Y
Sbjct: 422 NTMVGELKPDSRTMACILPACA---SLSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVK 214
+ + +FD +P + +W MI GY + A FN + RD +G++
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM---RD-----AGIE 530
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL------VDMYSKCG 268
P + + + +L S GLLE G + FY+ +ND I L VD+ S+ G
Sbjct: 531 PDEVSFISILYACSHSGLLEQGW-------RFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583
Query: 269 CLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
L A + + W A+ G I+
Sbjct: 584 NLSKAYKFIETLPIAPDATIWGALLCGCRIY 614
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 207/381 (54%), Gaps = 22/381 (5%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IR P ++ F + ++K + D+ T + L +CAR ++ +G H V GF
Sbjct: 84 IRGGMPNKALQSF-HQMAKEQVRLDEVTLLNVLVACARTGAMK---VGSLCHALVVLNGF 139
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
N + ++L+ YA + ++VF++MP R+ W +MI G C+QS + K+ A+
Sbjct: 140 EINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG-CTQSGRFKE----AV 194
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFRDM ++GVK D T+ V+S Q+G L+ G +H Y + E + + +L
Sbjct: 195 DLFRDM--QIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKE--LSVKNSL 250
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPN 319
+DMYSKCG ++ A IF + +++V TWT M G A++G EA+ L M + V PN
Sbjct: 251 IDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPN 310
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
V F + AC H GLVE+G H F M + + P I+HY C+VDLLGRA L EA FI
Sbjct: 311 EVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFI 370
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P+ PD ++WRSLL AC G V L E + + QL+P+ C V LSN+
Sbjct: 371 KDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPK------RCGGH--VLLSNV 422
Query: 440 YASAERWPDVESVRKQMKVKR 460
YA+ RW DV +VR M R
Sbjct: 423 YATTSRWVDVNNVRTGMGNSR 443
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 146/303 (48%), Gaps = 16/303 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+T D+++ A+ + AR SL +G Q H K + V LI+ Y+S +
Sbjct: 1 MTLDNYSLNIAISAAARVPSLD---VGSQFHALSLKLSLASDSFVLNALINMYSSCNYPA 57
Query: 162 SGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
S + V D P +S +WN +I GY K AL F M + V+ + T
Sbjct: 58 SARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNK-----ALQSFHQMAKE--QVRLDEVT 110
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
++ VL ++ G ++ G+ H + + E + +IG++LV MY+KCG ++ A +F+R
Sbjct: 111 LLNVLVACARTGAMKVGSLCHALVVLNGF--EINCYIGSSLVSMYAKCGMVEEARRVFNR 168
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M E+NV+ WT+M G G+ EA+ L M+ GVK + T ++ ++C G ++ G
Sbjct: 169 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLG 228
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+L G+ + + ++D+ + G + +AY G+ K D W ++
Sbjct: 229 RYLHAYCDGH-GLGKELSVKNSLIDMYSKCGDVNKAYQIFRGL-TKRDVFTWTVMIMGFA 286
Query: 400 VHG 402
++G
Sbjct: 287 MNG 289
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 151/502 (30%), Positives = 239/502 (47%), Gaps = 68/502 (13%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L I + +KQ+ + L T YA + +C+ S + H +F H PN+
Sbjct: 13 LTKINHLNQLKQLQSHLTTLGHSQTHFYAFKLIRFCSLNLS--NLHYAHQIFNHIHSPNI 70
Query: 75 FLFNTLIRCTPPQD--SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+LF +I Q + +F ++ + ++F Y L S + +L +H
Sbjct: 71 YLFTAIITAFSSQQHTTFKLFKTMLNSNIRP-NNFIYPHVLKS------VKERFLVDLVH 123
Query: 133 VHVTKRGFM--------------------------------FNVLVATTLIHFYASNKDI 160
+ K GF+ N++V T L+ Y D+
Sbjct: 124 AQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDV 183
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS--------G 212
G VFD+M R WNA+I+G C+Q+ + + LFR+M+ G
Sbjct: 184 EKGLMVFDEMVDRDVPAWNAVISG-CTQNGFFSE----GIRLFREMVFAAGLGEGGFCKG 238
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
KP T+VCVLS G+L+ G +HGY+ + ++ D F+ ALVDMY KCG L+
Sbjct: 239 NKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVV--DSFVSNALVDMYGKCGSLEL 296
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--VKPNAVTFTSLFAAC 330
A +F + K + +W +M A+HGK +AI + M +CG V+P+ VTF L AC
Sbjct: 297 ARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNAC 356
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H GLVE+G F+ M ++G+EP I HY C++DLLGRAG +EA + + G+ ++PD ++
Sbjct: 357 THGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVV 416
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W SLL+ C VHG L E K L+++ P L+NIY +W ++
Sbjct: 417 WGSLLNGCKVHGRTDLAEFAAKKLVEIDPH--------NGGYGTMLANIYGQLGKWDEMR 468
Query: 451 SVRKQMKVKRVETEPGSSILQT 472
+V ++K ++ PG S ++
Sbjct: 469 NVWSKLKQQKSYKIPGCSWIEV 490
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 200/350 (57%), Gaps = 18/350 (5%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L LG+ H + K N VA LI Y + +K+F + + TW+A+
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSAL 492
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I+ Y S +KD AL+L+ ML + GVKP T+V V+S + L LE G +H
Sbjct: 493 ISSY-SHLGHSKD----ALLLYDQMLTE--GVKPNSATLVSVISSCANLAALEHGELIHS 545
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+++ E D+ I TALVDMY KCG L A +F M E++V+TW M +G +HG+
Sbjct: 546 HVKDVGL--ECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEA 603
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+A++L M VKPN++TF ++ +ACCHAGLV++G LF M+ ++ +EP++KHY+C
Sbjct: 604 IQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRME-EYSLEPNLKHYAC 662
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDLLG++GHL+EA + + +PI+PD +W +LL AC +H + +G +V K PE
Sbjct: 663 MVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPE- 721
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ +SN Y SAE+W ++E +R MK VE G S +
Sbjct: 722 -------NDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 10/278 (3%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ H + +R F +VL+ LI YA K + VF + R + +W++M+ YC
Sbjct: 335 GKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCK 394
Query: 188 QSKKAKDCAFNALVLFRDM-LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
K L L+R+M D + +++ ++S S+LG L G H Y K
Sbjct: 395 AGLDLK-----CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK- 448
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
++ + + AL+ MY +CG D A IF ++ K+V+TW+A+ + + G +A+
Sbjct: 449 -HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L D M GVKPN+ T S+ ++C + +E G + ++K G+E + + +VD+
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDV-GLECDLSICTALVDMY 566
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+ G L A + ++ D + W ++S +HG+
Sbjct: 567 MKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEA 603
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 140/323 (43%), Gaps = 25/323 (7%)
Query: 27 IHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP-PNLFLFNTLIRCT 84
+HA +T+ L P A+L+ Y S + + P P+ FL+N+L+R
Sbjct: 28 LHALAVTSGLSPRPDFAAKLVSAY-----SSAGLPALAALAFAASPCPDAFLWNSLLRSR 82
Query: 85 PPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
S L + FT + A L L +G +H + + G +
Sbjct: 83 HRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAE---LGALPVGAAVHAYSVRFGLL 139
Query: 142 ---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
+V VA++L++ YA + ++FD+MP R W A+I+G + + ++
Sbjct: 140 EGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSY- 198
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF--YMPENDVFI 256
LV D G +P TM L LG L G C+HG+ K + P +
Sbjct: 199 -LVRMVRSAGD-GGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPS----V 252
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
++L MY+KC ++A ++F + EK++++WT++ G +A+ L M + G+
Sbjct: 253 VSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGL 312
Query: 317 KPNAVTFTSLFAACCHAGLVEEG 339
+P+ V + L A + V G
Sbjct: 313 QPDEVVISCLLAGLGNDAKVRGG 335
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 209/390 (53%), Gaps = 55/390 (14%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA----------------- 155
+ +CAR+ +++ G+Q+H + K GF + V TL+HFY
Sbjct: 284 MKACARYSAVTE---GQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDK 340
Query: 156 --------------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
N I +++FD MP R + +W+ MI+GY + AL
Sbjct: 341 SHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDM-----ALK 395
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGTAL 260
LF ML + ++P + T+ LS + G L+ G +H Y M + + +N + + L
Sbjct: 396 LFYSMLN--TSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDN---LSSGL 450
Query: 261 VDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+DMY+KCG + +A+ F+R+ +K +V W AM +AIHG + ++ L ++ +KP
Sbjct: 451 IDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N++TF + +ACCHAG V +G + F++M ++G++P IKHY C+VDLLGRAG+LEEA
Sbjct: 511 NSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
+ +P+KPD ++W S+LSA G+VALGE+ + L +L +ALSN
Sbjct: 571 VSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQ--------THGASKIALSN 622
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSS 468
IYA A W +V VRK+++ +E G S
Sbjct: 623 IYADAGHWINVSVVRKELQDANLERLTGRS 652
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 165/388 (42%), Gaps = 72/388 (18%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + R +V VF +S+ ++ ++ T A+ + AR + +T+ + IH
Sbjct: 115 LVTSFARAGHAARAVAVFRSMLSENVVP-NEATLAGAITAFARCGAPATVGM---IHGFA 170
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+R V+VAT L+H YA ++ S + +FD M R++ TWN M+NGY KAK
Sbjct: 171 LQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNGYV----KAKMI 226
Query: 196 AFNALVLFR-------------------DMLVDVS----------GVKPTDTTMVCVLSV 226
A V +R D++ D G + +V ++
Sbjct: 227 DMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKA 286
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD--------------- 271
++ + G +H + K + + F+ LV Y CG +
Sbjct: 287 CARYSAVTEGQQLHTVILKNGF--DAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTA 344
Query: 272 --NALL--------------IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
NALL +F M E++ ++W+ M +G G+ + A++L SM +
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
++PN VT S +A +G +++G + D + ++ V+ S ++D+ + G + +A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNR-PVQLTDNLSSGLIDMYAKCGSIADA 463
Query: 376 YNFIMGIPIKPDAIL-WRSLLSACNVHG 402
F + K ++ W +++ + +HG
Sbjct: 464 VQFFNRVNDKFSSVSPWNAMICSLAIHG 491
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 210/407 (51%), Gaps = 57/407 (14%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA--------- 155
++FTY F +G CAR L G Q+H V G+ NV V T+L++ YA
Sbjct: 29 NEFTYSFLIGGCARSRLLRE---GEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVR 85
Query: 156 -------------------------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
D+ +++FD+MP R+ +W MI G C+Q
Sbjct: 86 KARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAG-CAQIG 144
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+ K AL LF +M +GVK +V LS ++LG L+ G +H Y+++ +
Sbjct: 145 RCK----QALHLFHEM--RRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAG 198
Query: 251 ENDVFI--GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
+ + +L+ MY+ CG +D A +F M++++ ++WT+M TG A G EA+ +
Sbjct: 199 NQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVF 258
Query: 309 DSMRDCGV---KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
M+ G +P+ +TF + AC HAG V++G H F+ M KWG+ P I+HY C+VDL
Sbjct: 259 QWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDL 318
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG-KILLQLQPEVTFV 424
L RAG L+EA+ I +P+KP+ +W +LL C +H + L V K+ L+L+P+
Sbjct: 319 LSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQ--- 375
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ V LSN+YA+A+RW DV VR++M V G S +Q
Sbjct: 376 ----AAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQ 418
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 49/230 (21%)
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI G+ SQS+ + LV + +V+ +P + T ++ ++ LL G VH
Sbjct: 1 MIRGH-SQSETP-----HKLVELYNRMVEAE-AEPNEFTYSFLIGGCARSRLLREGEQVH 53
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDN---ALLIFSRMREKNVLTWTAMATGMAI 297
G + Y +VF+ T+LV++Y+ G D A +F + ++N+++W ++ G
Sbjct: 54 GRVVANGYC--TNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVR 111
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
G + A R+ D M + N V++T++ A C G ++ LHLF M+
Sbjct: 112 CGDVDGARRIFDEMPE----RNVVSWTTMIAGCAQIGRCKQALHLFHEMR---------- 157
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
RAG +K D + + LSAC GD+ LG
Sbjct: 158 ----------RAG-------------VKLDQVALVAALSACAELGDLKLG 184
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 209/390 (53%), Gaps = 55/390 (14%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA----------------- 155
+ +CAR+ +++ G+Q+H + K GF + V TL+HFY
Sbjct: 284 MKACARYSAVTE---GQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDK 340
Query: 156 --------------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
N I +++FD MP R + +W+ MI+GY + AL
Sbjct: 341 SHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDM-----ALK 395
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGTAL 260
LF ML + ++P + T+ LS + G L+ G +H Y M + + +N + + L
Sbjct: 396 LFYSMLN--TSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDN---LSSGL 450
Query: 261 VDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+DMY+KCG + +A+ F+R+ +K +V W AM +AIHG + ++ L ++ +KP
Sbjct: 451 IDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N++TF + +ACCHAG V +G + F++M ++G++P IKHY C+VDLLGRAG+LEEA
Sbjct: 511 NSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
+ +P+KPD ++W S+LSA G+VALGE+ + L +L +ALSN
Sbjct: 571 VSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQ--------THGASKIALSN 622
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSS 468
IYA A W +V VRK+++ +E G S
Sbjct: 623 IYADAGHWINVSVVRKELQDANLERLTGRS 652
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 165/388 (42%), Gaps = 72/388 (18%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + R +V VF +S+ ++ ++ T A+ + AR + +T+ + IH
Sbjct: 115 LVTSFARAGHAARAVAVFRSMLSENVVP-NEATLAGAITAFARCGAPATVGM---IHGFA 170
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+R V+VAT L+H YA ++ S + +FD M R++ TWN M+NGY KAK
Sbjct: 171 LQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNGYV----KAKMI 226
Query: 196 AFNALVLFR-------------------DMLVDVS----------GVKPTDTTMVCVLSV 226
A V +R D++ D G + +V ++
Sbjct: 227 DMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKA 286
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD--------------- 271
++ + G +H + K + + F+ LV Y CG +
Sbjct: 287 CARYSAVTEGQQLHTVILKNGF--DAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTA 344
Query: 272 --NALL--------------IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
NALL +F M E++ ++W+ M +G G+ + A++L SM +
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
++PN VT S +A +G +++G + D + ++ V+ S ++D+ + G + +A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNR-PVQLTDNLSSGLIDMYAKCGSIADA 463
Query: 376 YNFIMGIPIKPDAIL-WRSLLSACNVHG 402
F + K ++ W +++ + +HG
Sbjct: 464 VQFFNRVNDKFSSVSPWNAMICSLAIHG 491
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 200/350 (57%), Gaps = 18/350 (5%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L LG+ H + K N VA LI Y + +K+F + + TW+A+
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSAL 492
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I+ Y S +KD AL+L+ ML + GVKP T+V V+S + L LE G +H
Sbjct: 493 ISSY-SHLGHSKD----ALLLYDQMLTE--GVKPNSATLVSVISSCANLAALEHGELIHS 545
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+++ E D+ I TALVDMY KCG L A +F M E++V+TW M +G +HG+
Sbjct: 546 HVKDVGL--ECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEA 603
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+A++L M VKPN++TF ++ +ACCHAGLV++G LF M+ ++ +EP++KHY+C
Sbjct: 604 IQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRME-EYSLEPNLKHYAC 662
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDLLG++GHL+EA + + +PI+PD +W +LL AC +H + +G +V K PE
Sbjct: 663 MVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPE- 721
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ +SN Y SAE+W ++E +R MK VE G S +
Sbjct: 722 -------NDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 10/277 (3%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ H + +R F +VL+ LI YA K + VF + R + +W++M+ YC
Sbjct: 335 GKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCK 394
Query: 188 QSKKAKDCAFNALVLFRDM-LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
K L L+R+M D + +++ ++S S+LG L G H Y K
Sbjct: 395 AGLDLK-----CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK- 448
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
++ + + AL+ MY +CG D A IF ++ K+V+TW+A+ + + G +A+
Sbjct: 449 -HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L D M GVKPN+ T S+ ++C + +E G + ++K G+E + + +VD+
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDV-GLECDLSICTALVDMY 566
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+ G L A + ++ D + W ++S +HG+
Sbjct: 567 MKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGE 602
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 140/323 (43%), Gaps = 25/323 (7%)
Query: 27 IHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP-PNLFLFNTLIRCT 84
+HA +T+ L P A+L+ Y S + + P P+ FL+N+L+R
Sbjct: 28 LHALAVTSGLSPRPDFAAKLVSAY-----SSAGLPALAALAFAASPCPDAFLWNSLLRSR 82
Query: 85 PPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
S L + FT + A L L +G +H + + G +
Sbjct: 83 HRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAE---LGALPVGAAVHAYSVRFGLL 139
Query: 142 ---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
+V VA++L++ YA + ++FD+MP R W A+I+G + + ++
Sbjct: 140 EGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSY- 198
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF--YMPENDVFI 256
LV D G +P TM L LG L G C+HG+ K + P +
Sbjct: 199 -LVRMVRSAGD-GGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPS----V 252
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
++L MY+KC ++A ++F + EK++++WT++ G +A+ L M + G+
Sbjct: 253 VSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGL 312
Query: 317 KPNAVTFTSLFAACCHAGLVEEG 339
+P+ V + L A + V G
Sbjct: 313 QPDEVVISCLLAGLGNDAKVRGG 335
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 208/384 (54%), Gaps = 41/384 (10%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKK 165
T + L +CA S +++ G +H H K GF N V+V T LI YA + +
Sbjct: 88 ITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARL 147
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKK--------------------------AKDCAFNA 199
VFDQM +R+ +WN MI+GY K+C A
Sbjct: 148 VFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEA 207
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGT 258
L FR+M ++GV P T++ ++S + LG L G VH M+K F ++V +
Sbjct: 208 LECFREM--QLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEF---RDNVKVLN 262
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L+DMY++CGC++ A +F M ++N+++W ++ G A++G ++A+ SM+ G++P
Sbjct: 263 SLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEP 322
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N V++TS AC HAGL++EGL +F ++K P I+HY C+VDL RAG L+EA++
Sbjct: 323 NGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDV 382
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +P+ P+ ++ SLL+AC GDV L EKV K ++L P ++V SN
Sbjct: 383 IKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYP--------GGDSNYVLFSN 434
Query: 439 IYASAERWPDVESVRKQMKVKRVE 462
IYA+ +W VR++MK + ++
Sbjct: 435 IYAAVGKWDGASKVRREMKERGLQ 458
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 236/456 (51%), Gaps = 39/456 (8%)
Query: 27 IHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTP 85
IH+ I + L+S + +LI LY A S K VF +L +N++I+
Sbjct: 269 IHSYSIKHGLESELFVSNKLIDLY----AEFGSLKDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL--WLG-----RQIHVHVTKR 138
+ L + +L F + C SL+++ LG R + ++
Sbjct: 325 LNEQPL-------RAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRK 377
Query: 139 G-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G F+ ++ + ++ YA + S + VF+ +P + +WN +I+GY A
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNG-----FAS 432
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-FYMPENDVFI 256
A+ ++ M + + T V VL SQ G L G +HG + K Y+ DVF+
Sbjct: 433 EAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL---DVFV 489
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
GT+L DMY KCG LD+AL +F ++ N + W + HG G +A+ L M D GV
Sbjct: 490 GTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV 549
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KP+ +TF +L +AC H+GLV+EG F+ M++ +G+ P +KHY C+VDL GRAG LE A
Sbjct: 550 KPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIAL 609
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE-VTFVDVACTSEDFVA 435
NFI +P++PDA +W +LLSAC VHG+V LG+ + L +++PE V + V
Sbjct: 610 NFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGY---------HVL 660
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSN+YASA +W V+ +R K + PG S ++
Sbjct: 661 LSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSME 696
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/494 (24%), Positives = 223/494 (45%), Gaps = 75/494 (15%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T K +HA+L+ +NA+++ + A+L+ LYC + + + F H +++ +
Sbjct: 65 TNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLG----NVALARYTFDHIHNRDVYAW 120
Query: 78 NTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
N +I R + + F+ ++ L D T+ L +C G +IH
Sbjct: 121 NLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD------GNKIHC 174
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
K GFM++V VA +LIH Y + + + +FD+MP R +WNAMI+GYC QS AK
Sbjct: 175 LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYC-QSGNAK 233
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
+ AL L G++ D+ T+V +LS ++ G G +H Y K + E+
Sbjct: 234 E----ALTL-------SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIK--HGLES 280
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
++F+ L+D+Y++ G L + +F RM +++++W ++ ++ + AI L MR
Sbjct: 281 ELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMR 340
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVE-----------------------------EGLHLF 343
++P+ +T SL + G + L L
Sbjct: 341 LSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLV 400
Query: 344 DNMKS--KWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFI--MGIPIKPDAILWRSLLS 396
D+ ++ W + ++ I+ + G EA YN + G I + W S+L
Sbjct: 401 DSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLP 460
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC+ G + G K+ LL+ ++DV + +L+++Y R D S+ Q
Sbjct: 461 ACSQAGALRQGMKLHGRLLK---NGLYLDVFVGT----SLADMYGKCGRLDDALSLFYQ- 512
Query: 457 KVKRVETEPGSSIL 470
+ RV + P ++++
Sbjct: 513 -IPRVNSVPWNTLI 525
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 203/357 (56%), Gaps = 19/357 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G++IH +V ++G +V + ++L+ YA + I ++VF + R S +WN+++ GY
Sbjct: 225 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQ 284
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + AL LFR M+ + V+P V+ + L L G +HGY+ +
Sbjct: 285 NGRYNE-----ALRLFRQMVS--AKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 337
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ ++FI +ALVDMYSKCG + A IF RM + ++WTA+ G A+HG G+EA+ L
Sbjct: 338 F--GRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSL 395
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ GVKPN V F ++ AC H GLV+E F++M +G+ ++HY+ + DLLG
Sbjct: 396 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 455
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG LEEAY+FI + ++P +W +LLS+C+VH ++ L EKV + + + E
Sbjct: 456 RAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSE------- 508
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ--TTTHYTLDGFR 482
+V + N+YAS RW ++ +R +++ K + +P S ++ TH + G R
Sbjct: 509 -NMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDR 564
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 186/395 (47%), Gaps = 35/395 (8%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
I + S KQ+HAQ I S + +I +Y K ++ VF + P + +
Sbjct: 18 IKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEAL----LVFKTLESPPVLAW 73
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTF----------DDFTYVFALGSCARFCSLSTLWL 127
++IRC Q S+ L +F D + L SC L
Sbjct: 74 KSVIRCFTDQS-------LFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR---F 123
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G +H + + G ++ L++ Y+ I S +KVF+ MP + ++N +I GY +
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGY-A 182
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
QS +D AL + R+M S +KP T+ VL + S+ + G +HGY+ +
Sbjct: 183 QSGMYED----ALRMVREM--GTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG 236
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
++DV+IG++LVDMY+K ++++ +FS + ++ ++W ++ G +G+ NEA+RL
Sbjct: 237 I--DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRL 294
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M V+P AV F+S+ AC H + G L + + G +I S +VD+
Sbjct: 295 FRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVL-RGGFGRNIFIASALVDMYS 353
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G+++ A + + D + W +++ +HG
Sbjct: 354 KCGNIQAARKIFDRMNLH-DEVSWTAIIMGHALHG 387
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 131/284 (46%), Gaps = 30/284 (10%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K+IH +I + S + + L+ +Y S + VF+H + +N+L+
Sbjct: 226 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSER----VFSHLYRRDSISWNSLVAG 281
Query: 82 --RCTPPQDSVLVFAYWVSK----GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ +++ +F VS G + F + +CA L+TL LG+Q+H +V
Sbjct: 282 YVQNGRYNEALRLFRQMVSAKVRPGAVAFSS-----VIPACAH---LATLHLGKQLHGYV 333
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+ GF N+ +A+ L+ Y+ +I + +K+FD+M + +W A+I G+
Sbjct: 334 LRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGH----- 388
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A+ LF +M GVKP V VL+ S +GL++ M K + + + ++
Sbjct: 389 GHEAVSLFEEM--KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ-ELE 445
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
A+ D+ + G L+ A S+MR E W+ + + ++H
Sbjct: 446 HYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH 489
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 223/388 (57%), Gaps = 21/388 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D++L F + G+ DDFTY L +CA +L +L G +H V K G + VA
Sbjct: 435 DTILHFNEMLRFGMKP-DDFTYGSVLKACA---ALRSLEYGLMVHDKVIKSGLGSDAFVA 490
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+T++ Y I +K+ D++ + +WNA+++G+ S +K++++ A F +ML
Sbjct: 491 STVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGF-SLNKESEE----AQKFFSEML 545
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D+ G+KP T VL + L +E G +HG + K + +D +I + LVDMY+KC
Sbjct: 546 -DM-GLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEML--DDEYISSTLVDMYAKC 601
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + ++LL+F ++ +++ ++W AM G A+HG G EA+R+ + M+ V PN TF ++
Sbjct: 602 GDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVL 661
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GL ++G F M + + +EP ++H++C+VD+LGR+ +EA FI +P + D
Sbjct: 662 RACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD 721
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W++LLS C + DV + E +L L P+ + V ++ LSN+YA + +W
Sbjct: 722 AVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV--------YILLSNVYAESGKWA 773
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTH 475
DV R+ +K R++ EPG S ++ +
Sbjct: 774 DVSRTRRLLKQGRLKKEPGCSWIEVQSE 801
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T++ Y+ DIS+ +FD MP +WNA+++GYC + F V D+
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRG------MFQESV---DLF 137
Query: 208 VDVS--GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
V+++ GV P TT +L S L L G VH KT E DV G+ALVDMY
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGL--EIDVRTGSALVDMYG 195
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KC LD+AL F M E+N ++W A G + + + L M+ G+ + ++ S
Sbjct: 196 KCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 255
Query: 326 LFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
F +C + G L + +K+K+ + + + IVD+ +A L +A G+P
Sbjct: 256 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 312
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 25/326 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
+Y A SCA L+T GRQ+H H K F + +V T ++ YA ++ ++ F
Sbjct: 252 SYASAFRSCAAMSCLNT---GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF 308
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+P + T NAM+ G A+ LF+ M+ S ++ ++ V S
Sbjct: 309 FGLPNHTVETSNAMMVGLVRAG-----LGIEAMGLFQFMIR--SSIRFDVVSLSGVFSAC 361
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
++ G VH K+ + + D+ + A++D+Y KC L A LIF M++K+ ++
Sbjct: 362 AETKGYFQGQQVHCLAIKSGF--DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS 419
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
W A+ + +G ++ I + M G+KP+ T+ S+ AC +E GL + D +
Sbjct: 420 WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 479
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGD 403
KS G + + S +VD+ + G ++EA ++ I G + + W ++LS +++ +
Sbjct: 480 KSGLGSDAFVA--STVVDMYCKCGIIDEAQKLHDRIGGQQV----VSWNAILSGFSLNKE 533
Query: 404 VALGEKVGKILLQ--LQPE-VTFVDV 426
+K +L L+P+ TF V
Sbjct: 534 SEEAQKFFSEMLDMGLKPDHFTFATV 559
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 190/329 (57%), Gaps = 17/329 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T ++ ++ D+ + +++FD MP R WNAM+ GY + + AL L
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSRE-----ALGL 243
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M +GV ++ T+V VL+ +Q+G LE G VH Y+ V +GTALVD
Sbjct: 244 FDEM--QKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGM--RVSVTLGTALVD 299
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MYSKCG + ++ +F MRE+N+ TWT+ +G+A++G G E + L M G++PN VT
Sbjct: 300 MYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVT 359
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F ++ C AGLVEEG FD+MK K VEP ++HY C+VDL GRAG L++A +FI +
Sbjct: 360 FVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSM 419
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P++P +W +LL+A +H +V LG+ L +++ + V LSNIYA
Sbjct: 420 PVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESK--------NDAAHVLLSNIYAE 471
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ W V VR MK K V+ PG S ++
Sbjct: 472 SHNWKGVSKVRNMMKSKGVKKMPGCSAIE 500
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 14/204 (6%)
Query: 97 VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156
+ K + + T V L +CA+ +L G +H +V RG +V + T L+ Y+
Sbjct: 247 MQKAGVAVSEVTLVSVLTACAQMGALER---GMWVHSYVCSRGMRVSVTLGTALVDMYSK 303
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
++ +VF+ M R+ TW + ++G + + ++C L LF+ M + +G++P
Sbjct: 304 CGVVTMSMEVFETMRERNIYTWTSALSGL-AMNGMGEEC----LELFKRM--ESAGMEPN 356
Query: 217 DTTMVCVLSVSSQLGLLEFG-ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T V VL S GL+E G AC +K P + + +VD+Y + G LD+A+
Sbjct: 357 GVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHY--GCMVDLYGRAGRLDDAVD 414
Query: 276 IFSRMR-EKNVLTWTAMATGMAIH 298
+ M E + W A+ IH
Sbjct: 415 FINSMPVEPHEGVWGALLNASRIH 438
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 241/456 (52%), Gaps = 31/456 (6%)
Query: 21 PSHIKQIHAQLITNALKSPPLYAQLI-QLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
PS +K++H +LK +Y +L+ + A S VF L +N
Sbjct: 396 PS-LKELHCY----SLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNA 450
Query: 80 LI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
LI + + P+ S+ + GLL D+FT L +C++ L +L LG+++H +
Sbjct: 451 LIGGYAQSSDPRLSLDAHLQMKNSGLLP-DNFTVCSLLSACSK---LKSLRLGKEVHGFI 506
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+ ++ V +++ Y ++ + + +FD M S +WN +I G+ +
Sbjct: 507 IRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPER-- 564
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
AL LFR M++ G++P +M+ V S L L G H Y K ++ E++ F
Sbjct: 565 ---ALGLFRQMVL--YGIQPCGISMMTVFGACSLLPSLRLGREAHAYALK--HLLEDNAF 617
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
I +++DMY+K G + + +F+ ++EK+ +W AM G +HG+ EAI+L + M+ G
Sbjct: 618 IACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTG 677
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
P+ +TF + AC H+GL+ EGL D MKS +G++P++KHY+C++D+LGRAG L+ A
Sbjct: 678 RNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNA 737
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
+ +PD +W SLLS C +H ++ +GEKV L L+PE E++V
Sbjct: 738 LRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPE--------KPENYVL 789
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSN+YA +W DV VR++MK + + G S ++
Sbjct: 790 LSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIE 825
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 131/285 (45%), Gaps = 37/285 (12%)
Query: 54 ASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTY 109
SP ++ F NLF +N +I R + + +F +SK L D+FT+
Sbjct: 134 GSPDDSRSA---FDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTF 190
Query: 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ +CA +S + +G +H V K G + ++ V L+ FY ++ +S K+FD
Sbjct: 191 PCVIKACA---GISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDI 247
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP R+ +WN+MI + S D AF P T+V VL V ++
Sbjct: 248 MPERNLVSWNSMIRVF---SDNGDDGAF----------------MPDVATVVTVLPVCAR 288
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
+ G VHG+ K + ++ + AL+DMYSK GC+ ++ +IF KNV++W
Sbjct: 289 EREIGVGKGVHGWAVKLSL--DKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWN 346
Query: 290 AMATGMA----IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
M G + IHG + ++L D VK + VT + C
Sbjct: 347 TMVGGFSAEGDIHGTFDLLRQMLAGSED--VKADEVTILNAVPVC 389
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 29/282 (10%)
Query: 127 LGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
+GR+IH V+ + + ++ T +I YA + FD + ++ WNA+I+ Y
Sbjct: 102 MGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSY 161
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
+ L +F M + + + P + T CV+ + + + G VHG + K
Sbjct: 162 SRN-----ELYHEVLEMFIKM-ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVK 215
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
T + D+F+G ALV Y G + +AL +F M E+N+++W +M I
Sbjct: 216 TGLVE--DLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSM-------------I 260
Query: 306 RLL-DSMRDCGVKPNAVTFTSLFAACCHAGL--VEEGLHLFDNMKSKWGVEPHIKHYSCI 362
R+ D+ D P+ T ++ C V +G+H K ++ + + +
Sbjct: 261 RVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVH---GWAVKLSLDKELVVNNAL 317
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+D+ + G + ++ I + + + W +++ + GD+
Sbjct: 318 MDMYSKWGCIIDS-QMIFKLNNNKNVVSWNTMVGGFSAEGDI 358
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+L S + +E G +H + + + +DV T ++ MY+ CG D++ F +R
Sbjct: 90 LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLC-TRIITMYAMCGSPDDSRSAFDALRS 148
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
KN+ W A+ + + + +E + + M + P+ TF + AC AG+ + G+
Sbjct: 149 KNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKAC--AGISDVGIG 206
Query: 342 L-FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
L + K G+ + + +V G G + +A +P + + + W S++ +
Sbjct: 207 LAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMP-ERNLVSWNSMIRVFSD 265
Query: 401 HGD 403
+GD
Sbjct: 266 NGD 268
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 212/370 (57%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H+ + GF N+ + LI Y+ ++ +
Sbjct: 265 DESTMVTVVSACAQSGSIE---LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+++P + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGETPNDVTMLSIL 374
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ + K+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ + + L MR G++P+ +TF L +AC H+G+++ G H+F
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFR 494
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 495 TMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNV 554
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE +V LSNIYASA RW +V R + K ++
Sbjct: 555 ELGESFAENLIKIEPE--------NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKV 606
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 607 PGCSSIEIDS 616
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 35/364 (9%)
Query: 46 IQLYCTKKASPQSTKIVHFVFTHFDPP-----NLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
+ L C+ P S+ HF+ + DPP N + L C Q ++ A + G
Sbjct: 1 MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
L + +AL FC LS + G + V K N+L+ T+ +A + D
Sbjct: 61 LHNTN-----YALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115
Query: 161 SSGKKVFDQMP----MRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVKP 215
S K++ M + +S T+ ++ C++SK K+ + VL +D+
Sbjct: 116 VSALKLYVCMISLGLLPNSYTFPFVLKS-CAKSKAFKEGQQIHGHVLKLGCDLDL----- 169
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
++S+ Q G LE H +K+ P DV TAL+ Y+ G ++NA
Sbjct: 170 --YVHTSLISMYVQNGRLEDA---HKVFDKS---PHRDVVSYTALIKGYASRGYIENAQK 221
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F + K+V++W AM +G A G EA+ L M V+P+ T ++ +AC +G
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 336 VEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
+E G +HL+ + G ++K + ++DL + G LE A +P K D I W +
Sbjct: 282 IELGRQVHLWID---DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNT 337
Query: 394 LLSA 397
L+
Sbjct: 338 LIGG 341
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/473 (30%), Positives = 236/473 (49%), Gaps = 88/473 (18%)
Query: 66 FTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
F + PN+ +FN LIR C + +++ + + + ++ ++ S + C+
Sbjct: 33 FANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTS-----YSFSSLIKACT 87
Query: 122 L-STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS------------------------ 156
L G +H HV K GF +V V TTLI FY++
Sbjct: 88 LLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTT 147
Query: 157 -------NKDISSGKKVFDQMPMRSSATWNAMINGYC----------------------- 186
+ D++S ++FD+MP ++ ATWNAMI+GY
Sbjct: 148 MISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISW 207
Query: 187 -------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
S++K+ K+ + LF D++ G+ P + TM V+S + LG L G V
Sbjct: 208 TTMMNCYSRNKRYKE----VIALFHDVID--KGMIPDEVTMTTVISACAHLGALALGKEV 261
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H Y+ + + DV+IG++L+DMY+KCG +D ALL+F +++ KN+ W + G+A HG
Sbjct: 262 HLYLVLQGF--DLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHG 319
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
EA+R+ M ++PNAVTF S+ AC HAG +EEG F +M + + P ++HY
Sbjct: 320 YVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHY 379
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419
C+VDLL +AG LE+A I + ++P++ +W +LL+ C +H ++ + + L+ L+P
Sbjct: 380 GCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEP 439
Query: 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSSILQ 471
S + L N+YA RW +V +R MK VE PGSS ++
Sbjct: 440 S--------NSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVE 484
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 204/347 (58%), Gaps = 21/347 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+Q+H V GF F+ ++AT L++ Y +SS + +FD++P + WN +I GY
Sbjct: 94 GKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGY-- 151
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
A + + A V + D G+ P + T VL + L +E G +H ++ +T
Sbjct: 152 ----AWNGPYEAAVQLYYQMFDY-GLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTG 206
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN---VLTWTAMATGMAIHGKGNEA 304
+ E DVF+G AL+DMY+KCGC+ +A +F ++ ++ V++W AM TG A+HG EA
Sbjct: 207 W--EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEA 264
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364
+ L + M KP+ +TF + +AC H GL+EEG F+ M + ++P ++HY+C+VD
Sbjct: 265 LDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVD 323
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
LLG +G L+EAYN IM + + PD+ +W +LL++C +H +V LGE + L++L+P+
Sbjct: 324 LLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPD---- 379
Query: 425 DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ ++V LSNIYA A +W V +RK M +R++ S ++
Sbjct: 380 ----DAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIE 422
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 143/317 (45%), Gaps = 32/317 (10%)
Query: 25 KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+HAQ+ + A +L+ LYC S +F N+FL+N LIR
Sbjct: 95 KQLHAQVCLAGFGFDTVIATKLVNLYCV----CDSLSSARLLFDRIPKHNIFLWNVLIRG 150
Query: 84 ---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
P ++ + Y + L D+FT+ F L +CA +LS + GR+IH HV + G+
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACA---ALSAIEHGREIHEHVVQTGW 207
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS---ATWNAMINGYCSQSKKAKDCAF 197
+V V LI YA + S ++VFD++ +R + +WNAMI GY A
Sbjct: 208 EKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGH-----AT 262
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
AL LF +M KP T V VLS S GLLE G M + Y + V
Sbjct: 263 EALDLFEEM---NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRD-YKIDPTVQHY 318
Query: 258 TALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGK---GNEAIRLLDSMR- 312
T +VD+ G LD A + +M+ + W A+ IH G A+ L +
Sbjct: 319 TCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEP 378
Query: 313 -DCGVKPNAVTFTSLFA 328
D G N V ++++A
Sbjct: 379 DDAG---NYVILSNIYA 392
>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 767
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 216/393 (54%), Gaps = 35/393 (8%)
Query: 99 KGLLTFDDF-------------TYVFALGSCARF-CSLSTLWLGRQIHVHVTKRGFMFNV 144
+ L TF+D T + L SCA C ++ W+ I + +V
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
+V T L+ +A +++ +++FD + ++ W+AMI GY + C AL LFR
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGY-----EQGSCPEEALRLFR 365
Query: 205 DMLVDVS----GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
ML++ + VKP T+V V++ S+LG + +H Y T + D I +AL
Sbjct: 366 QMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL--DQDARIASAL 423
Query: 261 VDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+DM +KCG +++ +FS M E + V++W++M IHG+G A+ L MR G +P
Sbjct: 424 IDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEP 483
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +T+ S+ +AC HAGLVE+G F++M+ +G+ P KHY+C+VDLLGRAGHL+EA+N
Sbjct: 484 NEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNV 543
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I+ +PIK D LW SLL+AC++HG+ LGE V K +L L + V L+N
Sbjct: 544 ILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSN--------SVGHHVLLAN 595
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+Y A RW DV +R +++ + PG S ++
Sbjct: 596 MYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIE 628
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 166/342 (48%), Gaps = 29/342 (8%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+ +CA C + L G +H V K GF + + +++H Y++ KD+ +VF+ +P+
Sbjct: 169 VSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPI 228
Query: 173 --RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD-VSGVKPTDTTMVCVLSVSSQ 229
R +WN++I+G+ + A AL F DM+ + S V+P T++ +L ++
Sbjct: 229 EQRDVVSWNSLISGFTLNGE-----AERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAE 283
Query: 230 LGLLEFGACVHGYMEK--TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LG +E + VH Y+ + + DV + TAL+DM+++CG L A IF + KNV+
Sbjct: 284 LGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVC 343
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCG------VKPNAVTFTSLFAACCHAGLVEEGLH 341
W+AM G EA+RL M G VKPNAVT S+ AAC G
Sbjct: 344 WSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSAS 402
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL-WRSLLSACNV 400
+ G++ + S ++D+ + G +E + ++ W S++ A +
Sbjct: 403 MIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGI 462
Query: 401 HGDVALGEKVGKILLQLQP------EVTFVDV--ACTSEDFV 434
HG+ G++ ++ +++ E+T++ V AC+ V
Sbjct: 463 HGE---GKRALELFSEMRTGGYEPNEITYISVLSACSHAGLV 501
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 159/358 (44%), Gaps = 28/358 (7%)
Query: 57 QSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQD--SVLVFAYWVSKGLLTFDDFTYVFALG 114
++ + H +H D F +N+LI Q+ + L F + + ++FT+ L
Sbjct: 4 KTRRWYHCSISHKDT---FHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLK 60
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+CA +L L Q+H ++T+ G + A L+ Y +VFD+MP S
Sbjct: 61 ACA---ALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGS 117
Query: 175 --SATWNAMINGYCSQSKKAKDCAFNALVLFRDML----VDVSGVKPTD-TTMVCVLSVS 227
+W A+I+ Y S D AF A R M + GV +V +V
Sbjct: 118 VDVVSWTALISAY--SSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVG 175
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNV 285
L G+ VHG + K Y +G ++V MYS C + A +F+ + +++V
Sbjct: 176 CGSNCLRRGSAVHGLVVK--YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDV 233
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCG---VKPNAVTFTSLFAACCHAGLVEEGLHL 342
++W ++ +G ++G+ A+R + M G V+PN VT +L +C G VE +
Sbjct: 234 VSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293
Query: 343 FDNMKSKWG---VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + S+ V + + ++D+ R G+L A G+ K + + W ++++
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGK-NVVCWSAMIAG 350
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 40/247 (16%)
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN++I +Q+ + AL F M V + T +L + L L
Sbjct: 21 WNSLIAKNATQNPQ------TALTFFTRM--QAHAVPSNNFTFPALLKACAALRRLLPTL 72
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGM 295
VH Y+ + D F ALVD Y KCG A +F M E +V++WTA+ +
Sbjct: 73 QVHAYLTRLGLAA--DRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130
Query: 296 AIHGKGNEAIRLLDSMR---------DCGVKPNAVTFTSLFAAC---CHAGLVEEGLHLF 343
+ +G +EA + MR CGV + V+ +L +AC C + + G +
Sbjct: 131 SSNGCVDEAFKAFGRMRWMRGWDGSECCGV--DVVSLGALVSACAVGCGSNCLRRGSAVH 188
Query: 344 D-NMKSKWGVEPHIKH-----YSCIVDLLGRAGHLEEAYNFIMGIPIKP-DAILWRSLLS 396
+K +GV H+ + YS D+ G A+ GIPI+ D + W SL+S
Sbjct: 189 GLVVKYGFGVSTHLGNSMVHMYSACKDVGG-------AWRVFNGIPIEQRDVVSWNSLIS 241
Query: 397 ACNVHGD 403
++G+
Sbjct: 242 GFTLNGE 248
>gi|115477230|ref|NP_001062211.1| Os08g0511000 [Oryza sativa Japonica Group]
gi|42407533|dbj|BAD10739.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113624180|dbj|BAF24125.1| Os08g0511000 [Oryza sativa Japonica Group]
gi|215741604|dbj|BAG98099.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 512
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 213/389 (54%), Gaps = 27/389 (6%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG---FMFN 143
+++V +F V++G + T +G+CA+ L + GR +H + + G + +
Sbjct: 140 REAVALFREAVARGQ-EVNGITVAQVMGACAQSRDLES---GRWVHATLRRWGVEPILLD 195
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
V +AT ++H YAS + + +VFD+MP R+ +WNAM CS+ + L +F
Sbjct: 196 VALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAE-VCSRHGRQD----KVLEVF 250
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
M G+KP T + +L + G G VH YMEKT + V + T+L+DM
Sbjct: 251 PGM--HSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKT--IGHRHVAVCTSLMDM 306
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
YSK G +AL IF ++ K+++ WT+M G+A HG G +A++L + M+ GV P+ V F
Sbjct: 307 YSKIGNARSALQIFQCLKRKDLMAWTSMIIGLAKHGHGKDAVQLFNQMQHGGVVPDHVAF 366
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ AC HAG+V+E FD+M + +G+ P IKHY C++DL RAG L EA + +P
Sbjct: 367 VGVLTACSHAGMVDEARKYFDSMWNHYGIRPTIKHYGCMIDLFSRAGRLAEAEGMMQMMP 426
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
I+P +W S+++ C VHG + E+VG+ + +L P+ + +V +SNIYA
Sbjct: 427 IQPSVTMWGSMMNGCKVHGRADIAERVGRQVAELNPQFGAI--------YVIMSNIYAEI 478
Query: 444 ERWPDVESVRK---QMKVKRVETEPGSSI 469
RW VE R+ Q +K++ G+ +
Sbjct: 479 GRWHAVEHTRRLMWQTGLKKIVGSSGTEV 507
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 176/386 (45%), Gaps = 33/386 (8%)
Query: 75 FLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGS-----------CARFCSLS 123
+ NTLIR S+L+ + + + D FT+ FAL + CA + +
Sbjct: 13 YQHNTLIRAAADHRSLLLAFRAMLREGVAADHFTFPFALKALAQAHHRSPPPCAAATATA 72
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
T LG +H + K G NV A+ L+H Y S D +S + VFD R+ TW AMI
Sbjct: 73 TTTLG-CLHAQMVKSGHGANVYAASALVHAYVSRADAASARAVFDAARHRNVVTWTAMIA 131
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
G+ + + A A+ LFR+ + G + T+ V+ +Q LE G VH +
Sbjct: 132 GHAAAGE-----AREAVALFREAV--ARGQEVNGITVAQVMGACAQSRDLESGRWVHATL 184
Query: 244 EKTFYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ P DV + TA++ MY+ CG LD A +F +M +N ++W AMA + HG+ +
Sbjct: 185 RRWGVEPILLDVALATAVLHMYASCGGLDAAFEVFDKMPRRNEVSWNAMAEVCSRHGRQD 244
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
+ + + M G+KP+ VT+ S+ AC G G + M+ G H+ + +
Sbjct: 245 KVLEVFPGMHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEKTIG-HRHVAVCTSL 303
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ---- 418
+D+ + G+ A + K D + W S++ HG G+ ++ Q+Q
Sbjct: 304 MDMYSKIGNARSALQIFQCLKRK-DLMAWTSMIIGLAKHGH---GKDAVQLFNQMQHGGV 359
Query: 419 --PEVTFVDV--ACTSEDFVALSNIY 440
V FV V AC+ V + Y
Sbjct: 360 VPDHVAFVGVLTACSHAGMVDEARKY 385
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 13/218 (5%)
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
C+H M K+ + +V+ +ALV Y +A +F R +NV+TWTAM G A
Sbjct: 77 GCLHAQMVKSGH--GANVYAASALVHAYVSRADAASARAVFDAARHRNVVTWTAMIAGHA 134
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-- 354
G+ EA+ L G + N +T + AC + +E G + ++ +WGVEP
Sbjct: 135 AAGEAREAVALFREAVARGQEVNGITVAQVMGACAQSRDLESGRWVHATLR-RWGVEPIL 193
Query: 355 -HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVALGEKVG 411
+ + ++ + G L+ A+ +P + + + W ++ C+ HG D L G
Sbjct: 194 LDVALATAVLHMYASCGGLDAAFEVFDKMP-RRNEVSWNAMAEVCSRHGRQDKVLEVFPG 252
Query: 412 KILLQLQPE-VTFVDV--ACTSEDFVALSN-IYASAER 445
+ ++P+ VT++ + ACTS+ L ++A E+
Sbjct: 253 MHSVGMKPDKVTWLSILRACTSKGAAGLGQGVHAYMEK 290
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/374 (34%), Positives = 212/374 (56%), Gaps = 22/374 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK----RGFMFNVLVATTLIHFYASNKDI 160
D+ T V + +CA+ S+ LGRQ+H V GF ++ + LI Y+ D+
Sbjct: 195 DEGTLVSVVSACAQSGSIE---LGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDV 251
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ +F+ + + +WN +I GY + + K+ AL+LF++ML SG P D T+
Sbjct: 252 ETAFGLFEGLSCKDVVSWNTLIGGY-THTNLYKE----ALLLFQEMLR--SGECPNDVTL 304
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
+ VL + LG ++ G +H Y++K N+ + T+L+DMY+KCG ++ A +F+ M
Sbjct: 305 LSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM 364
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+++ +W AM G A+HG+ N A L MR V+P+ +TF L +AC H+GL++ G
Sbjct: 365 LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGR 424
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+F +M + + P ++HY C++DLLG +G +EA I +P++PD ++W SLL AC
Sbjct: 425 QIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKK 484
Query: 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460
HG++ L E + L++++PE S +V LSNIYA+A RW DV VR + K
Sbjct: 485 HGNLELAESFAQKLIKIEPE--------NSGSYVLLSNIYATAGRWEDVARVRGVLNGKG 536
Query: 461 VETEPGSSILQTTT 474
++ PG S ++ +
Sbjct: 537 MKKVPGCSSIEVDS 550
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 91/457 (19%)
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF PNL ++NT++R + P ++ ++ VS G L + +++ F L SCA+
Sbjct: 20 VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLP-NSYSFPFLLKSCAKSK 78
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN----------------------- 157
+ GRQIH V K G + V T+LI YA N
Sbjct: 79 AFEE---GRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135
Query: 158 --------KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
D S +KVFD++ R +WNAMI GY + + AL LF++M+
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEE-----ALELFKEMM-- 188
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP--ENDVFIGTALVDMYSKC 267
+ V+P + T+V V+S +Q G +E G VH +++ + + I AL+D+YSKC
Sbjct: 189 RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A +F + K+V++W + G EA+ L M G PN VT S+
Sbjct: 249 GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL 308
Query: 328 AACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA---------- 375
AC H G ++ G +H++ + K K GV + ++D+ + G +E A
Sbjct: 309 PACAHLGAIDIGRWIHVYIDKKLK-GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR 367
Query: 376 ---------YNFIM---------------GIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ F M G ++PD I + LLSAC+ G + LG ++
Sbjct: 368 SLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIF 427
Query: 412 KILLQ---LQPEVTFVDVACTSEDFVALSNIYASAER 445
K + Q L P++ D + S ++ AE
Sbjct: 428 KSMTQDYNLTPKLEHYGCMI---DLLGHSGLFKEAEE 461
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 15/196 (7%)
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A+ +F ++E N+L W M G A A+ + M G PN+ +F L +C
Sbjct: 17 AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76
Query: 333 AGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ EEG + +K G++ ++ ++ ++ + R G LE+A + D +
Sbjct: 77 SKAFEEGRQIHAQVLKLGCGLDRYV--HTSLISMYARNGGLEDARK-VFDASSHRDVVSC 133
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
+L++ GD KV E+T DV + A+ Y R+ +
Sbjct: 134 TALITGYASRGDFRSARKVFD-------EITERDVV----SWNAMITGYVENGRYEEALE 182
Query: 452 VRKQMKVKRVETEPGS 467
+ K+M V + G+
Sbjct: 183 LFKEMMRTNVRPDEGT 198
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 247/494 (50%), Gaps = 57/494 (11%)
Query: 20 TPSHIKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
+P+ ++ +HA+++ L PP A L+ Y + P + + F ++++++
Sbjct: 18 SPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHL----FDETPRRDIYIYS 73
Query: 79 TLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+L+ P+ ++ + +S L D F + ++ S F L + LGRQ+H H
Sbjct: 74 SLLTAVSHSASPELALPILRCMLSADALHPDHFV-ISSVASV--FARLRSRRLGRQLHAH 130
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+ + +V ++L+ Y G+KVFD M ++S W A+++GY S + +
Sbjct: 131 FVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEE- 189
Query: 195 CAFNALVLFRDM--------------LVDVS---------------GVKPTDT-TMVCVL 224
AL LFR M LV+ GV+ D + V+
Sbjct: 190 ----ALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVI 245
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S+ L G +HG + ++ +++ +G AL+DMYSKC + +A +F + ++
Sbjct: 246 GGSADLAAFVLGRQLHGSTMRLGFL--SNMIVGNALIDMYSKCSDILSAREVFEGITFRD 303
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++WT M G A HG+ EA+ L D M G KPN VTF L AC HAGLV++G LF+
Sbjct: 304 VISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFE 363
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+MK+++G+ P ++HY+C +DLL R+GHL EA + +P +PD W +LLSAC + D
Sbjct: 364 SMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDA 423
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ ++ LL+L+P+ S ++ LSN+YA +W V VRK M + E
Sbjct: 424 EMCIRISDKLLELRPK--------DSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKE 475
Query: 465 PGSSILQTTTHYTL 478
PG S ++ + L
Sbjct: 476 PGYSWIEAGREFRL 489
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 223/388 (57%), Gaps = 21/388 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D++L F + G+ DDFTY L +CA +L +L G +H V K G + VA
Sbjct: 435 DTILHFNEMLRFGMKP-DDFTYGSVLKACA---ALRSLEYGLMVHDKVIKSGLGSDAFVA 490
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+T++ Y I +K+ D++ + +WNA+++G+ S +K++++ A F +ML
Sbjct: 491 STVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGF-SLNKESEE----AQKFFSEML 545
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D+ G+KP T VL + L +E G +HG + K + +D +I + LVDMY+KC
Sbjct: 546 -DM-GLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEML--DDEYISSTLVDMYAKC 601
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + ++LL+F ++ +++ ++W AM G A+HG G EA+R+ + M+ V PN TF ++
Sbjct: 602 GDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVL 661
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GL ++G F M + + +EP ++H++C+VD+LGR+ +EA FI +P + D
Sbjct: 662 RACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD 721
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W++LLS C + DV + E +L L P+ + V ++ LSN+YA + +W
Sbjct: 722 AVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV--------YILLSNVYAESGKWA 773
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTH 475
DV R+ +K R++ EPG S ++ +
Sbjct: 774 DVSRTRRLLKQGRLKKEPGCSWIEVQSE 801
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T++ Y+ DIS+ +FD MP +WNA+++GYC + F V D+
Sbjct: 87 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRG------MFQESV---DLF 137
Query: 208 VDVS--GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
V+++ GV P TT +L S L L G VH KT E DV G+ALVDMY
Sbjct: 138 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGL--EIDVRTGSALVDMYG 195
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KC LD+AL F M E+N ++W A G + + + L M+ G+ + ++ S
Sbjct: 196 KCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 255
Query: 326 LFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
F +C + G L + +K+K+ + + + IVD+ +A L +A G+P
Sbjct: 256 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 312
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 25/326 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
+Y A SCA L+T GRQ+H H K F + +V T ++ YA ++ ++ F
Sbjct: 252 SYASAFRSCAAMSCLNT---GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF 308
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+P + T NAM+ G A+ LF+ M+ S ++ ++ V S
Sbjct: 309 FGLPNHTVETSNAMMVGLVRAG-----LGIEAMGLFQFMIR--SSIRFDVVSLSGVFSAC 361
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
++ G VH K+ + + D+ + A++D+Y KC L A LIF M++K+ ++
Sbjct: 362 AETKGYFQGQQVHCLAIKSGF--DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS 419
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
W A+ + +G ++ I + M G+KP+ T+ S+ AC +E GL + D +
Sbjct: 420 WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 479
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGD 403
KS G + + S +VD+ + G ++EA ++ I G + + W ++LS +++ +
Sbjct: 480 KSGLGSDAFVA--STVVDMYCKCGIIDEAQKLHDRIGGQQV----VSWNAILSGFSLNKE 533
Query: 404 VALGEKVGKILLQ--LQPE-VTFVDV 426
+K +L L+P+ TF V
Sbjct: 534 SEEAQKFFSEMLDMGLKPDHFTFATV 559
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 223/388 (57%), Gaps = 21/388 (5%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D++L F + G+ DDFTY L +CA +L +L G +H V K G + VA
Sbjct: 477 DTILHFNEMLRFGMKP-DDFTYGSVLKACA---ALRSLEYGLMVHDKVIKSGLGSDAFVA 532
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+T++ Y I +K+ D++ + +WNA+++G+ S +K++++ A F +ML
Sbjct: 533 STVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGF-SLNKESEE----AQKFFSEML 587
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
D+ G+KP T VL + L +E G +HG + K + +D +I + LVDMY+KC
Sbjct: 588 -DM-GLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEML--DDEYISSTLVDMYAKC 643
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G + ++LL+F ++ +++ ++W AM G A+HG G EA+R+ + M+ V PN TF ++
Sbjct: 644 GDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVL 703
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GL ++G F M + + +EP ++H++C+VD+LGR+ +EA FI +P + D
Sbjct: 704 RACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD 763
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A++W++LLS C + DV + E +L L P+ + V ++ LSN+YA + +W
Sbjct: 764 AVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSV--------YILLSNVYAESGKWA 815
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTH 475
DV R+ +K R++ EPG S ++ +
Sbjct: 816 DVSRTRRLLKQGRLKKEPGCSWIEVQSE 843
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T++ Y+ DIS+ +FD MP +WNA+++GYC + F V D+
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRG------MFQESV---DLF 179
Query: 208 VDVS--GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
V+++ GV P TT +L S L L G VH KT E DV G+ALVDMY
Sbjct: 180 VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGL--EIDVRTGSALVDMYG 237
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KC LD+AL F M E+N ++W A G + + + L M+ G+ + ++ S
Sbjct: 238 KCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 297
Query: 326 LFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
F +C + G L + +K+K+ + + + IVD+ +A L +A G+P
Sbjct: 298 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG--TAIVDVYAKANSLTDARRAFFGLP 354
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 25/326 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
+Y A SCA L+T GRQ+H H K F + +V T ++ YA ++ ++ F
Sbjct: 294 SYASAFRSCAAMSCLNT---GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF 350
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+P + T NAM+ G A+ LF+ M+ S ++ ++ V S
Sbjct: 351 FGLPNHTVETSNAMMVGLVRAG-----LGIEAMGLFQFMIR--SSIRFDVVSLSGVFSAC 403
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
++ G VH K+ + + D+ + A++D+Y KC L A LIF M++K+ ++
Sbjct: 404 AETKGYFQGQQVHCLAIKSGF--DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVS 461
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
W A+ + +G ++ I + M G+KP+ T+ S+ AC +E GL + D +
Sbjct: 462 WNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVI 521
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGD 403
KS G + + S +VD+ + G ++EA ++ I G + + W ++LS +++ +
Sbjct: 522 KSGLGSDAFVA--STVVDMYCKCGIIDEAQKLHDRIGGQQV----VSWNAILSGFSLNKE 575
Query: 404 VALGEKVGKILLQ--LQPE-VTFVDV 426
+K +L L+P+ TF V
Sbjct: 576 SEEAQKFFSEMLDMGLKPDHFTFATV 601
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 247/489 (50%), Gaps = 52/489 (10%)
Query: 14 KLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKA---SPQSTKIVHFVFTHF 69
KL + IKQIH ++ L +S + +LI+ TK P + +++ V F
Sbjct: 55 KLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTL-TKLGVPMDPYARRVIEPV--QF 111
Query: 70 DPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P FL+ +IR + D + + K +T FT+ L +C ++ L
Sbjct: 112 RNP--FLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG---TMKDLN 166
Query: 127 LGRQIHVHVTK-RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LGRQ H + RGF F V V T+I Y + I +KVFD+MP R +W +I Y
Sbjct: 167 LGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAY 225
Query: 186 CS-----------QSKKAKD-CAFNALVL-------------FRDMLVDVSGVKPTDTTM 220
+S KD A+ A+V + D + + SG++ + T+
Sbjct: 226 ARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRM-EKSGIRADEVTV 284
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
+S +QLG ++ +K+ Y P + V IG+AL+DMYSKCG ++ A+ +F M
Sbjct: 285 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEG 339
KNV T+++M G+A HG+ EA+ L M +KPN VTF AC H+GLV++G
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+FD+M +GV+P HY+C+VDLLGR G L+EA I + ++P +W +LL AC
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACR 464
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H + + E + L +L+P++ +++ LSN+YASA W V VRK +K K
Sbjct: 465 IHNNPEIAEIAAEHLFELEPDII--------GNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 460 RVETEPGSS 468
++ P S
Sbjct: 517 GLKKTPAVS 525
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 191/335 (57%), Gaps = 19/335 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV T+I YA IS K +FD+MP R +W AMI GY SQS + + AL L
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGY-SQSGHS----YEALRL 391
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +L++ G + ++ LS + + LE G +HG + K Y E F+G AL+
Sbjct: 392 F--VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGY--ETGCFVGNALLL 447
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG ++ A +F M K++++W M G + HG G EA+R +SM+ G+KP+ T
Sbjct: 448 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
++ +AC H GLV++G F M +GV P+ +HY+C+VDLLGRAG LEEA+N + +
Sbjct: 508 MVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P +PDA +W +LL A VHG+ L E + ++PE S +V LSN+YAS
Sbjct: 568 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPE--------NSGMYVLLSNLYAS 619
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
+ RW DV +R +M+ K V+ PG S +Q TH
Sbjct: 620 SGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTH 654
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 126/278 (45%), Gaps = 22/278 (7%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+I YA N +I +++FD+ P+ TW AM++GY Q++ ++ A L
Sbjct: 244 DVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYI-QNRMVEE----AREL 298
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F M P +S ++ L G V E MP +V ++
Sbjct: 299 FDRM--------PERNE----VSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMIT 346
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
Y++CG + A +F +M +++ ++W AM G + G EA+RL M G + N +
Sbjct: 347 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSS 406
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F+S + C +E G L + K G E + ++ + + G +EEA + +
Sbjct: 407 FSSALSTCADVVALELGKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 465
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
K D + W ++++ + HG GE+ + ++ E
Sbjct: 466 AGK-DIVSWNTMIAGYSRHG---FGEEALRFFESMKRE 499
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
++ AL +CA +L LG+Q+H + K G+ V L+ Y I +F
Sbjct: 406 SFSSALSTCADVVALE---LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLF 462
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+M + +WN MI GY AL F M + G+KP D TMV VLS
Sbjct: 463 KEMAGKDIVSWNTMIAGYSRHG-----FGEEALRFFESMKRE--GLKPDDATMVAVLSAC 515
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVL 286
S GL++ G M + + + N +VD+ + G L+ A + M E +
Sbjct: 516 SHTGLVDKGRQYFHTMTQDYGVRPNSQHY-ACMVDLLGRAGLLEEAHNLMKNMPFEPDAA 574
Query: 287 TWTAMATGMAIHG 299
W + +HG
Sbjct: 575 IWGTLLGASRVHG 587
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/315 (23%), Positives = 130/315 (41%), Gaps = 55/315 (17%)
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-- 190
+ V KR ++ + +I Y N + + +FD+MP R +WN MI GY
Sbjct: 79 LRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLG 138
Query: 191 KAKD----------CAFNALV--------------LFRDM--LVDVSG-------VKPTD 217
KA++ C++N ++ +F M DVS V+ +
Sbjct: 139 KARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSK 198
Query: 218 TTMVCVLSVSSQ-LGLLEFGACVHGYMEK-------TFY--MPENDVFIGTALVDMYSKC 267
CVL S + L+ + + G+++K F+ M DV ++ Y++
Sbjct: 199 LEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQN 258
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G +D A +F +V TWTAM +G + EA L D M + N V++ ++
Sbjct: 259 GEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE----RNEVSWNAML 314
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
A VE LFD M + ++ ++ ++ + G + EA N +P K D
Sbjct: 315 AGYVQGERVEMAKELFDVMPCR-----NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRD 368
Query: 388 AILWRSLLSACNVHG 402
+ W ++++ + G
Sbjct: 369 PVSWAAMIAGYSQSG 383
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 100/254 (39%), Gaps = 58/254 (22%)
Query: 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
I Y S +VF +MP SS ++NAMI+GY N ML D
Sbjct: 66 ISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLR----------NGEFELARMLFD- 114
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
MPE D+ ++ Y + L
Sbjct: 115 -------------------------------------EMPERDLVSWNVMIKGYVRNRNL 137
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
A +F RM E++V +W + +G A +G ++A R+ D M + N V++ +L +A
Sbjct: 138 GKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPE----KNDVSWNALLSAY 193
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
+EE LF + + W + ++C++ + + EA F + ++ D +
Sbjct: 194 VQNSKLEEACVLFGS-RENWA----LVSWNCLLGGFVKKKKIVEARQFFDSMKVR-DVVS 247
Query: 391 WRSLLSACNVHGDV 404
W ++++ +G++
Sbjct: 248 WNTIITGYAQNGEI 261
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 208/391 (53%), Gaps = 44/391 (11%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L +G IH +V K+G + + V++ LI Y S +VFDQM + NA
Sbjct: 263 LEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAF 322
Query: 182 I-----NGYCSQS----KKAKD----------------CAFN-----ALVLFRDMLVDVS 211
I NG S ++ KD C+ N AL LFR+M ++
Sbjct: 323 IFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM--QIA 380
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
GVKP T+ C+L + L G H + + DV++G+AL+DMY+KCG +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGI--STDVYVGSALIDMYAKCGRIQ 438
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+ + F + KN++ W A+ G A+HGK EA+ + D M+ G KP+ ++FT + +AC
Sbjct: 439 ASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACS 498
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+GL EEG + F++M SK+G+E ++HY+C+V LL RAG LE+AY I +P+ PDA +W
Sbjct: 499 QSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVW 558
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
+LLS+C VH +V+LGE + L +L+P +++ LSNIYAS W +V
Sbjct: 559 GALLSSCRVHNNVSLGEVAAEKLFELEPS--------NPGNYILLSNIYASKGMWNEVNR 610
Query: 452 VRKQMKVKRVETEPGSSILQ--TTTHYTLDG 480
VR MK K + PG S ++ H L G
Sbjct: 611 VRDMMKNKGLRKNPGCSWIEVKNKVHMLLAG 641
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 182/412 (44%), Gaps = 51/412 (12%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S +Q HA ++ L L +L+ Y +T ++ V PN+F F+TL
Sbjct: 30 SQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV----PEPNVFSFSTL 85
Query: 81 IRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I ++ F+ +++GL+ D+ A+ +CA LS L RQ+H +
Sbjct: 86 IYAFSKFHQFHHALSTFSQMLTRGLMP-DNRVLPSAVKACA---GLSALKPARQVHGIAS 141
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS--KKAKD 194
GF + V ++L+H Y I +VFD+M +W+A++ Y Q +AK
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201
Query: 195 ---------------------CAFN-------ALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FN A+++F DM + G +P TT+ VL
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM--HLRGFEPDGTTISSVLPA 259
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
L L G +HGY+ K + +D + +AL+DMY KC C +F +M +V
Sbjct: 260 VGDLEDLVMGILIHGYVIKQGLV--SDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVG 317
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+ A G++ +G+ ++RL ++D G++ N V++TS+ A C G E L LF M
Sbjct: 318 SCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM 377
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAG---HLEEAYNFIMGIPIKPDAILWRSLL 395
+ GV+P+ C++ G H + A+ F + I D + +L+
Sbjct: 378 QIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALI 428
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 18/263 (6%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
++L RQ H H+ K G + +AT L+ YA+N + V D +P + +++ +I
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86
Query: 183 NGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+ +K F+ AL F ML G+ P + + + + L L+ VHG
Sbjct: 87 YAF------SKFHQFHHALSTFSQMLT--RGLMPDNRVLPSAVKACAGLSALKPARQVHG 138
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ + ++D F+ ++LV MY KC + +A +F RM E +V++W+A+ A G
Sbjct: 139 IASVSGF--DSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+EA RL M D GV+PN +++ + A H+GL E + +F +M + G EP +
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR-GFEP---DGTT 252
Query: 362 IVDLLGRAGHLEEAYNFIMGIPI 384
I +L G LE+ +MGI I
Sbjct: 253 ISSVLPAVGDLED---LVMGILI 272
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+++ L G+ H +RG +V V + LI YA I + + FD +P ++ WNA
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I GY K A A+ +F L+ SG KP + CVLS SQ GL E G+
Sbjct: 458 VIAGYAMHGK-----AKEAMEIFD--LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
M Y E V +V + S+ G L+ A + RM + W A+ + +H
Sbjct: 511 NSMSSK-YGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVH 568
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/494 (29%), Positives = 247/494 (50%), Gaps = 57/494 (11%)
Query: 20 TPSHIKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFN 78
+P+ ++ +HA+++ L PP A L+ Y + P + + F ++++++
Sbjct: 100 SPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHL----FDETPRRDIYIYS 155
Query: 79 TLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVH 134
+L+ P+ ++ + +S L D F + ++ S F L + LGRQ+H H
Sbjct: 156 SLLTAVSHSASPELALPILRCMLSADALHPDHFV-ISSVASV--FARLRSRRLGRQLHAH 212
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
+ + +V ++L+ Y G+KVFD M ++S W A+++GY S + +
Sbjct: 213 FVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEE- 271
Query: 195 CAFNALVLFRDM--------------LVDVS---------------GVKPTDT-TMVCVL 224
AL LFR M LV+ GV+ D + V+
Sbjct: 272 ----ALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVI 327
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S+ L G +HG + ++ +++ +G AL+DMYSKC + +A +F + ++
Sbjct: 328 GGSADLAAFVLGRQLHGSTMRLGFL--SNMIVGNALIDMYSKCSDILSAREVFEGITFRD 385
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++WT M G A HG+ EA+ L D M G KPN VTF L AC HAGLV++G LF+
Sbjct: 386 VISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFE 445
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+MK+++G+ P ++HY+C +DLL R+GHL EA + +P +PD W +LLSAC + D
Sbjct: 446 SMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDA 505
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ ++ LL+L+P+ S ++ LSN+YA +W V VRK M + E
Sbjct: 506 EMCIRISDKLLELRPK--------DSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKE 557
Query: 465 PGSSILQTTTHYTL 478
PG S ++ + L
Sbjct: 558 PGYSWIEAGREFRL 571
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 200/350 (57%), Gaps = 18/350 (5%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L LG+ H + K N VA LI Y + +K+F + + TW+A+
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSAL 492
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I+ Y S +KD AL+L+ ML + GVKP T+V V+S + L LE G +H
Sbjct: 493 ISSY-SHLGHSKD----ALLLYDQMLTE--GVKPNSATLVSVISSCANLAALEHGELIHS 545
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+++ E D+ I TALVDMY KCG L A +F M E++V+TW M +G +HG+
Sbjct: 546 HVKDVGL--ECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEA 603
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+A++L M VKPN++TF ++ +ACCHAGLV++G LF M+ ++ +EP++KHY+C
Sbjct: 604 IQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRME-EYSLEPNLKHYAC 662
Query: 362 IVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
+VDLLG++GHL+EA + + +PI+PD +W +LL AC +H + +G +V K PE
Sbjct: 663 MVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPE- 721
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ +SN Y SAE+W ++E +R MK VE G S +
Sbjct: 722 -------NDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTID 764
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 10/278 (3%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ H + +R F +VL+ LI YA K + VF + R + +W++M+ YC
Sbjct: 335 GKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCK 394
Query: 188 QSKKAKDCAFNALVLFRDM-LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
K L L+R+M D + +++ ++S S+LG L G H Y K
Sbjct: 395 AGLDLK-----CLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK- 448
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
++ + + AL+ MY +CG D A IF ++ K+V+TW+A+ + + G +A+
Sbjct: 449 -HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALL 507
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L D M GVKPN+ T S+ ++C + +E G + ++K G+E + + +VD+
Sbjct: 508 LYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDV-GLECDLSICTALVDMY 566
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+ G L A + ++ D + W ++S +HG+
Sbjct: 567 MKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGEA 603
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 140/323 (43%), Gaps = 25/323 (7%)
Query: 27 IHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP-PNLFLFNTLIRCT 84
+HA +T+ L P A+L+ Y S + + P P+ FL+N+L+R
Sbjct: 28 LHALAVTSGLSPRPDFAAKLVSAY-----SSAGLPALAALAFAASPCPDAFLWNSLLRSR 82
Query: 85 PPQD---SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
S L + FT + A L L +G +H + + G +
Sbjct: 83 HRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAE---LGALPVGAAVHAYSVRFGLL 139
Query: 142 ---FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
+V VA++L++ YA + ++FD+MP R W A+I+G + + ++
Sbjct: 140 EGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSY- 198
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF--YMPENDVFI 256
LV D G +P TM L LG L G C+HG+ K + P +
Sbjct: 199 -LVRMVRSAGD-GGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPS----V 252
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
++L MY+KC ++A ++F + EK++++WT++ G +A+ L M + G+
Sbjct: 253 VSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGL 312
Query: 317 KPNAVTFTSLFAACCHAGLVEEG 339
+P+ V + L A + V G
Sbjct: 313 QPDEVVISCLLAGLGNDAKVRGG 335
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/483 (32%), Positives = 242/483 (50%), Gaps = 57/483 (11%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST-KIVHFVFTHFDPPNLFLFNTLIRC 83
KQIHA ITN L + I + SP+ + +FTH PN+F +N++I
Sbjct: 5 KQIHAHAITNNLTRFSYISSRILAFFA--LSPRGDFRYAETLFTHIPNPNIFDYNSIITS 62
Query: 84 --TPPQDSVLVFAY----------------WVSKGLLTFDDFTYVFA----LGSCAR--- 118
T Q L F + + K ++ VF LG+ +
Sbjct: 63 YTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQVFTLSMKLGNSSDVYF 122
Query: 119 -------FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
F S + L RQ+ + R NV+ T+L+ Y S ++ + VFD+MP
Sbjct: 123 VSSVINAFSKHSAIHLARQVFDECSNR----NVVCWTSLVSGYCSCGLVNEARDVFDKMP 178
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG---VKPTDTTMVCVLSVSS 228
+R+ A+++AM++GY ++ + LFR++ G +K +V VL+ +
Sbjct: 179 LRNEASYSAMVSGYVRNGFFSE-----GVQLFRELKKKDKGCACLKFNGALLVSVLNACT 233
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+G E G +H Y+E+ E D+ +GTAL+D Y KCG + A +F++M K+V TW
Sbjct: 234 MVGAFEEGKWIHSYVEENGL--EYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATW 291
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+AM G+AI+G A+ L + M G KPN VTF + AC H L E LF M
Sbjct: 292 SAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSE 351
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+ + P I+HY C+VD+L R+G +++A FI + I+PD +W SLL+ C +HG LG+
Sbjct: 352 KYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHIEPDGAIWGSLLNGCLMHGHYELGQ 411
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
KVGK L++ +P+ S +V L+N+YA+ +W V VRK MK + V G S
Sbjct: 412 KVGKYLIEFEPK--------HSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWS 463
Query: 469 ILQ 471
++
Sbjct: 464 FIE 466
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 154/445 (34%), Positives = 226/445 (50%), Gaps = 58/445 (13%)
Query: 65 VFTHFDPPNLFLFNTLIR--CTPPQD--SVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F P++ +N++I C D ++ F++ + L D FT L +CA
Sbjct: 233 LFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRE 292
Query: 121 SLSTLWLGRQIHVHV-------------------TKRGFM--------------FNVLVA 147
SL LG+QIH H+ K G + NV+
Sbjct: 293 SLK---LGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
T+L+ Y DI + +FD + R W AMI GY + +ALVLFR M+
Sbjct: 350 TSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLIS-----DALVLFRLMI 404
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+ G KP + T+ VLSV S L L+ G +H + + + V +G AL+ MYS+
Sbjct: 405 RE--GPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV--SSVSVGNALITMYSRS 460
Query: 268 GCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
G + +A IF+ + ++ LTWT+M +A HG GNEAI L + M +KP+ +T+ +
Sbjct: 461 GSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGV 520
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+AC H GLVE+G F+ MK+ +EP HY+C++DLLGRAG LEEAYNFI +PI+P
Sbjct: 521 LSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEP 580
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
D + W SLLS+C VH V L + + LL + P S ++AL+N ++ +W
Sbjct: 581 DVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPN--------NSGAYLALANTLSACGKW 632
Query: 447 PDVESVRKQMKVKRVETEPGSSILQ 471
D VRK MK K V+ E G S +Q
Sbjct: 633 EDAAKVRKSMKDKAVKKEQGFSWVQ 657
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 177/429 (41%), Gaps = 94/429 (21%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+ +V F VS G+ + FT+ L SCA + L +G+++H V K G V V
Sbjct: 127 KSAVHAFLRMVSSGI-SPTQFTFTNVLASCA---AAQALDVGKKVHSFVVKLGQSGVVPV 182
Query: 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN----------------------- 183
A +L++ YA D K VFD+M ++ ++TWN MI+
Sbjct: 183 ANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDI 242
Query: 184 --------GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
GYC Q + AL F ML S +KP T+ VLS + L+
Sbjct: 243 VSWNSIITGYCHQGYDIR-----ALETFSFML-KSSSLKPDKFTLGSVLSACANRESLKL 296
Query: 236 GACVHGYMEK--------------TFY-----------------MPENDVFIGTALVDMY 264
G +H ++ + + Y P +V T+L+D Y
Sbjct: 297 GKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
K G +D A IF ++ ++V+ WTAM G A +G ++A+ L M G KPN T
Sbjct: 357 FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI------VDLLGRAGHLEEAYNF 378
++ + V L D+ K V ++ S + + + R+G +++A
Sbjct: 417 AVLS-------VISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKI 469
Query: 379 IMGIPIKPDAILWRSLLSACNVHG----DVALGEKVGKILLQLQPE-VTFVDV--ACTSE 431
I D + W S++ + HG + L EK+ +I L+P+ +T+V V ACT
Sbjct: 470 FNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRI--NLKPDHITYVGVLSACTHV 527
Query: 432 DFVALSNIY 440
V Y
Sbjct: 528 GLVEQGKSY 536
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 156/382 (40%), Gaps = 80/382 (20%)
Query: 126 WLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN- 183
++GR IH + K G + V + L++ Y S ++FD+MP++++ +WN +++
Sbjct: 29 FIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSA 88
Query: 184 ----GYCSQSKKAKD--------------CAFNALVLFRD-----MLVDVSGVKPTDTTM 220
G +++ D +N L LF+ + + SG+ PT T
Sbjct: 89 HAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTF 148
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF-IGTALVDMYSKCGCLDNALLIFSR 279
VL+ + L+ G VH ++ K + ++ V + +L++MY+KCG A ++F R
Sbjct: 149 TNVLASCAAAQALDVGKKVHSFVVK---LGQSGVVPVANSLLNMYAKCGDSVMAKVVFDR 205
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
MR K+ TW M + + + A+ L D M D P+ V++ S+ CH G
Sbjct: 206 MRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD----PDIVSWNSIITGYCHQGYDIRA 261
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
L F M + +KPD S+LSAC
Sbjct: 262 LETFSFM--------------------------------LKSSSLKPDKFTLGSVLSACA 289
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+ LG+ Q+ + DV AL ++YA + +V ++
Sbjct: 290 NRESLKLGK-------QIHAHIVRADVDIAGAVGNALISMYAKS------GAVEVAHRIV 336
Query: 460 RVETEPGSSILQTTTHYTLDGF 481
+ P +++ T+ LDG+
Sbjct: 337 EITGTPSLNVIAFTS--LLDGY 356
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 214/397 (53%), Gaps = 46/397 (11%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNVLVATTLIHFYASNKDISSG 163
+ T++ L +CA F S + + +H + K G +V+V T LI Y+ +
Sbjct: 91 NHITFITLLSACADFPS-ESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHA 149
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSK-----------KAKDC---------------AF 197
+KVF + +++S +WN M+NG+ + +D +
Sbjct: 150 RKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSE 209
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE---NDV 254
AL F M SGV +++ VL+ + LG L G VH F MP+ +++
Sbjct: 210 QALECFHQM--QRSGVAADYVSIIAVLAACADLGALTLGLWVH-----RFVMPQEFKDNI 262
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
I +L+DMYS+CGC++ A +F +M ++ +++W ++ G A++G +E++ +M+
Sbjct: 263 KISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKE 322
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G KP+ V++T AC HAGLV +GL LFDNMKS + P I+HY CIVDL GRAG LE+
Sbjct: 323 GFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLED 382
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434
A N I +P+KP+ ++ SLL+AC HGDV L E++ K L +L PE +V
Sbjct: 383 ALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPE--------GDAYYV 434
Query: 435 ALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
LSNIYA+ +W +VR+ MK + V+ +PG S ++
Sbjct: 435 LLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVE 471
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 151/370 (40%), Gaps = 92/370 (24%)
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF-- 235
W + + YC + ++ A F M ++GV+P T + +LS + F
Sbjct: 60 WTSSLARYCRNGQLSE-----AAAEFTRM--RLAGVEPNHITFITLLSACADFPSESFFF 112
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKC---------------------------- 267
+ +HGY K + + V +GTAL+DMYSKC
Sbjct: 113 ASSLHGYACK-YGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGF 171
Query: 268 ---GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
G ++ A+ +F M ++ ++WTA+ G+ HG +A+ M+ GV + V+
Sbjct: 172 MRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSII 231
Query: 325 SLFAACCHAGLVEEGL--HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY------ 376
++ AAC G + GL H F M ++ + +IK + ++D+ R G +E A
Sbjct: 232 AVLAACADLGALTLGLWVHRF-VMPQEF--KDNIKISNSLIDMYSRCGCIEFARQVFVKM 288
Query: 377 ---------NFIMGIPI-------------------KPDAILWRSLLSACNVHGDVALGE 408
+ I+G + KPD + + L+AC+ G V G
Sbjct: 289 AKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGL 348
Query: 409 KV---GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
++ K + ++ P + E + + ++Y A R D ++ ++M +K E
Sbjct: 349 ELFDNMKSVHKITPRI---------EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVL 399
Query: 466 GSSILQTTTH 475
GS + TH
Sbjct: 400 GSLLAACRTH 409
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++ WT+ +G+ +EA MR GV+PN +TF +L +AC A E
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSAC--ADFPSESFFFAS 114
Query: 345 NMKS---KWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
++ K+G++ H+ + ++D+ + L A + +K +++ W ++L+
Sbjct: 115 SLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVK-NSVSWNTMLNGFMR 173
Query: 401 HGDVAL 406
+G++ L
Sbjct: 174 NGEIEL 179
>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
Length = 492
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 236/453 (52%), Gaps = 31/453 (6%)
Query: 22 SHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S KQ HAQ++ + + + L L+ +Y + K VF N+ +N L
Sbjct: 23 SQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARK----VFDKMVERNMHSWNIL 78
Query: 81 IRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I D++ VF ++ G D FT +CA + +LG+ +H V
Sbjct: 79 IASYAHNCFFYDALGVFDSFLKMGFRP-DHFTLPPVFKACA---GIGDSYLGKMLHSWVI 134
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
+ GF V+V ++++ FYA + + F M R S WN MI G K C
Sbjct: 135 RIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNLMIVGL------GKACF 188
Query: 197 F-NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
F +AL FRDML + GVK T+ +LSV G L G +HG + K + +V
Sbjct: 189 FRDALECFRDMLSE--GVKMDSRTVPSILSVCGGEGDLMKGKEIHGQVVKN-QIFGCEVA 245
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
IG +L+DMY+KCGCL ++ +F+ M E N++TWT+M + +HGKG+EA+ L M+ CG
Sbjct: 246 IGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALALFKKMKYCG 305
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+PN VT T++ A+C H+GL+E+G +F ++ +G EP +HY+C+VDLLGR G+LEEA
Sbjct: 306 FQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLGRFGYLEEA 365
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
+ I + A +W +LL+ C +H ++ +GE L +L+P S +++A
Sbjct: 366 FELIKNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPR--------NSSNYIA 417
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
L ++Y S W V R +M+ + PG S
Sbjct: 418 LCSMYDSLGIWDGVSRTRAKMRELGLVKTPGCS 450
>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
Length = 767
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 216/393 (54%), Gaps = 35/393 (8%)
Query: 99 KGLLTFDDF-------------TYVFALGSCARF-CSLSTLWLGRQIHVHVTKRGFMFNV 144
+ L TF+D T + L SCA C ++ W+ I + +V
Sbjct: 251 RALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDV 310
Query: 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFR 204
+V T L+ +A +++ +++FD + ++ W+AMI GY + C AL LFR
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGY-----EQGSCPEEALRLFR 365
Query: 205 DMLVDVS----GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
ML++ + VKP T+V V++ S+LG + +H Y T + D I +AL
Sbjct: 366 QMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL--DQDARIASAL 423
Query: 261 VDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+DM +KCG +++ +FS M E + V++W++M IHG+G A+ L MR G +P
Sbjct: 424 IDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEP 483
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +T+ S+ +AC HAGLVE+G F++M+ +G+ P KHY+C+VDLLGRAGHL+EA+N
Sbjct: 484 NEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNV 543
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I+ +PIK D LW SLL+AC++HG+ LGE V K +L L + V L+N
Sbjct: 544 ILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSN--------SVGHHVLLAN 595
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+Y A RW DV +R +++ + PG S ++
Sbjct: 596 MYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIE 628
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 166/342 (48%), Gaps = 29/342 (8%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+ +CA C + L G +H V K GF + + +++H Y++ KD+ +VF+ +P+
Sbjct: 169 VSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPI 228
Query: 173 --RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD-VSGVKPTDTTMVCVLSVSSQ 229
R +WN++I+G+ + A AL F DM+ + S V+P T++ +L ++
Sbjct: 229 EQRDVVSWNSLISGFXLNGE-----AERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAE 283
Query: 230 LGLLEFGACVHGYMEK--TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LG +E + VH Y+ + + DV + TAL+DM+++CG L A IF + KNV+
Sbjct: 284 LGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVC 343
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCG------VKPNAVTFTSLFAACCHAGLVEEGLH 341
W+AM G EA+RL M G VKPNAVT S+ AAC G
Sbjct: 344 WSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSAS 402
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL-WRSLLSACNV 400
+ G++ + S ++D+ + G +E + ++ W S++ A +
Sbjct: 403 MIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGI 462
Query: 401 HGDVALGEKVGKILLQLQP------EVTFVDV--ACTSEDFV 434
HG+ G++ ++ +++ E+T++ V AC+ V
Sbjct: 463 HGE---GKRALELFSEMRTGGYEPNEITYISVLSACSHAGLV 501
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 153/342 (44%), Gaps = 25/342 (7%)
Query: 73 NLFLFNTLIRCTPPQD--SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+ F +N+LI Q+ + L F + + ++FT+ L +CA +L L Q
Sbjct: 17 DTFHWNSLIAKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACA---ALRRLLPTLQ 73
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS--SATWNAMINGYCSQ 188
+H ++T+ G + A L+ Y +VFD+MP S +W A+I+ Y
Sbjct: 74 VHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY--S 131
Query: 189 SKKAKDCAFNALVLFRDML----VDVSGVKPTD-TTMVCVLSVSSQLGLLEFGACVHGYM 243
S D AF A R M + GV +V +V L G+ VHG +
Sbjct: 132 SNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLV 191
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWTAMATGMAIHGKG 301
K Y +G ++V MYS C + A +F+ + +++V++W ++ +G ++G+
Sbjct: 192 VK--YGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249
Query: 302 NEAIRLLDSMRDCG---VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG---VEPH 355
A+R + M G V+PN VT +L +C G VE + + + S+ V
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + ++D+ R G+L A G+ K + + W ++++
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGK-NVVCWSAMIAG 350
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 105/247 (42%), Gaps = 40/247 (16%)
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN++I +K A AL F M V + T +L + L L
Sbjct: 21 WNSLI------AKNATQNPQTALTFFTRM--QAHAVPSNNFTFPALLKACAALRRLLPTL 72
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGM 295
VH Y+ + D F ALVD Y KCG A +F M E +V++WTA+ +
Sbjct: 73 QVHAYLTRLGLAA--DRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130
Query: 296 AIHGKGNEA---------IRLLDSMRDCGVKPNAVTFTSLFAAC---CHAGLVEEGLHLF 343
+ +G +EA +R D CGV + V+ +L +AC C + + G +
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGV--DVVSLGALVSACAVGCGSNCLRRGSAVH 188
Query: 344 D-NMKSKWGVEPHIKH-----YSCIVDLLGRAGHLEEAYNFIMGIPIKP-DAILWRSLLS 396
+K +GV H+ + YS D+ G A+ GIPI+ D + W SL+S
Sbjct: 189 GLVVKYGFGVSTHLGNSMVHMYSACKDVGG-------AWRVFNGIPIEQRDVVSWNSLIS 241
Query: 397 ACNVHGD 403
++G+
Sbjct: 242 GFXLNGE 248
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/477 (31%), Positives = 243/477 (50%), Gaps = 53/477 (11%)
Query: 27 IHAQLITNALKSPPLYAQ--LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI--- 81
IHA+++ +S LY LI +Y S + VF +L +N+L+
Sbjct: 99 IHARVLKLGFESH-LYVSNALINMY----GSCGHLGLAQKVFDEMPERDLVSWNSLVCGY 153
Query: 82 -RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
+C ++ + VF G+ D T V + +C SL + + ++ +
Sbjct: 154 GQCKRFREVLGVFEAMRVAGV-KGDAVTMVKVVLACT---SLGEWGVADAMVDYIEENNV 209
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-----------QS 189
+V + TLI Y + + VFDQM R+ +WNAMI GY +
Sbjct: 210 EIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDA 269
Query: 190 KKAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+D AL LF++M+ S VKP + T+ VLS + G L+
Sbjct: 270 MSQRDVISWTNMITSYSQAGQFTEALRLFKEMME--SKVKPDEITVASVLSACAHTGSLD 327
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G H Y++K Y + D+++G AL+DMY KCG ++ AL +F MR+K+ ++WT++ +G
Sbjct: 328 VGEAAHDYIQK--YDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISG 385
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+A++G + A+ M V+P+ F + AC HAGLV++GL F++M+ +G++P
Sbjct: 386 LAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKP 445
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
+KHY C+VDLL R+G+L+ A+ FI +P+ PD ++WR LLSA VHG++ L E K L
Sbjct: 446 EMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKL 505
Query: 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L+L P S ++V SN YA + RW D +R+ M+ V+ GSS ++
Sbjct: 506 LELDPS--------NSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIE 554
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 188/404 (46%), Gaps = 53/404 (13%)
Query: 34 NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDS 89
N P LI+ Y SP + H +F P L +N +IR P ++
Sbjct: 5 NLRTDPSTIYNLIKSYAL---SPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEA 61
Query: 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATT 149
+ ++ +GLL ++ TY+F +CAR +S G IH V K GF ++ V+
Sbjct: 62 IRMYNLMYRQGLLG-NNLTYLFLFKACARVPDVSC---GSTIHARVLKLGFESHLYVSNA 117
Query: 150 LIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
LI+ Y S + +KVFD+MP R +WN+++ GY Q K+ ++ L +F M
Sbjct: 118 LINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGY-GQCKRFRE----VLGVFEAM--R 170
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM------ 263
V+GVK TMV V+ + LG + Y+E+ E DV++G L+DM
Sbjct: 171 VAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNV--EIDVYLGNTLIDMYGRRGL 228
Query: 264 -------------------------YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
Y K G L A +F M +++V++WT M T +
Sbjct: 229 VHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQA 288
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ EA+RL M + VKP+ +T S+ +AC H G ++ G D ++ K+ V+ I
Sbjct: 289 GQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQ-KYDVKADIYV 347
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ ++D+ + G +E+A + K D++ W S++S V+G
Sbjct: 348 GNALIDMYCKCGVVEKALEVFKEMR-KKDSVSWTSIISGLAVNG 390
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/391 (32%), Positives = 200/391 (51%), Gaps = 41/391 (10%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
D + + K + D L +CAR SL G+ +H ++ N+ V
Sbjct: 334 DGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDN---GKDVHDYIKANNMESNLFVC 390
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
L+ YA + + VF M ++ +WN MI
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI------------------------- 425
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
+KP TM CVL + L LE G +HGY+ + Y +D + ALVD+Y KC
Sbjct: 426 ---GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGY--SSDRHVANALVDLYVKC 480
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G L A L+F + K++++WT M G +HG GNEAI + MRD G++P+ V+F S+
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H+GL+E+G F MK+ + +EP ++HY+C+VDLL R G+L +AY F+ +PI PD
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPD 600
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
A +W +LL C + D+ L EKV + + +L+PE T +V L+NIYA AE+W
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGY--------YVLLANIYAEAEKWE 652
Query: 448 DVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
+V+ +R+++ + + PG S ++ L
Sbjct: 653 EVKRLREKIGKQGLRKNPGCSWIEIKGKVNL 683
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 146/328 (44%), Gaps = 51/328 (15%)
Query: 114 GSCARFCS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
GS + C+ L + G+++H + + + L+ FYA+ D+ G++VFD M
Sbjct: 103 GSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEK 162
Query: 173 RSSATWNAMINGYCSQSK-KAKDCAFNALV--------------LFRDMLVDVS------ 211
++ WN M++ Y K C F +V LF D L D
Sbjct: 163 KNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELF-DKLCDRDVISWNS 221
Query: 212 ------------------------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
G+ T++ VL + G L G VH K+
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E + L+DMYSKCG LD AL +F +M E+NV++WT+M G G+ + AI+L
Sbjct: 282 F--ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
L M GVK + V TS+ AC +G ++ G + D +K+ +E ++ + ++D+
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESNLFVCNALMDMYA 398
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLL 395
+ G +E A N + + D I W +++
Sbjct: 399 KCGSMEAA-NSVFSTMVVKDIISWNTMI 425
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 50 CTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTF 104
C + S + K VH ++ + NLF+ N L+ +C + + VF+ V K ++++
Sbjct: 362 CARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISW 421
Query: 105 ---------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155
D T L +CA SLS L G++IH ++ + G+ + VA L+ Y
Sbjct: 422 NTMIGELKPDSRTMACVLPACA---SLSALERGKEIHGYILRNGYSSDRHVANALVDLYV 478
Query: 156 SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVK 214
+ + +FD +P + +W MI GY + A FN + RD +G++
Sbjct: 479 KCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM---RD-----AGIE 530
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL------VDMYSKCG 268
P + + + +L S GLLE G + FY+ +ND I L VD+ S+ G
Sbjct: 531 PDEVSFISILYACSHSGLLEQGW-------RFFYIMKNDFNIEPKLEHYACMVDLLSRTG 583
Query: 269 CLDNA 273
L A
Sbjct: 584 NLSKA 588
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 163/498 (32%), Positives = 251/498 (50%), Gaps = 64/498 (12%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
IKQ HAQLIT AL S P+ A + K A+ S H +F P+LF++NT+I+
Sbjct: 31 QIKQTHAQLITTALISHPVSANKL----LKLAACASLSYAHKLFDQIPQPDLFIYNTMIK 86
Query: 83 C---TPP--QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+P +S++VF L + +++VFA +C + G Q+ +H K
Sbjct: 87 AHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQE---GEQVRIHAVK 143
Query: 138 RGFMFNVLVATTLIHFY---------------ASNKDISS----------------GKKV 166
G NV V LI Y A ++D+ S K++
Sbjct: 144 VGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKEL 203
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD M R +W+ +I GY C AL F ML G KP + T+V L+
Sbjct: 204 FDGMRERDVVSWSTIIAGYVQVG-----CFMEALDFFHKMLQ--IGPKPNEYTLVSALAA 256
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNV 285
S L L+ G +H Y+ K + N+ + + ++DMY+KCG +++A +F + ++ V
Sbjct: 257 CSNLVALDQGKWIHAYIGKG-EIKMNERLLAS-IIDMYAKCGEIESASRVFFEHKVKQKV 314
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
W AM G A+HG NEAI + + M+ + PN VTF +L AC H +VEEG F
Sbjct: 315 WLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRL 374
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
M S + + P I+HY C+VDLL R+G L+EA + I +P+ PD +W +LL+AC ++ D+
Sbjct: 375 MVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDME 434
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE- 464
G ++G+I+ + P + C V LSNIY+++ RW + +R++ ++ R +
Sbjct: 435 RGYRIGRIIKGMDPN----HIGC----HVLLSNIYSTSGRWNEARILREKNEISRDRKKI 486
Query: 465 PG-SSI-LQTTTHYTLDG 480
PG SSI L+ T H L G
Sbjct: 487 PGCSSIELKGTFHQFLVG 504
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/480 (30%), Positives = 243/480 (50%), Gaps = 52/480 (10%)
Query: 24 IKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL- 80
+++IHA I + L + ++ + Y + K+ F P+L F +L
Sbjct: 30 LQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKL----FDEIPNPDLISFTSLM 85
Query: 81 ---IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
++ ++++ +FA V+ G D F V AL + + +GR +H + +
Sbjct: 86 SLHLQLDNQREAISLFARVVAAGHRP-DGFAVVGALSASS---GAGDQVVGRAVHGLIFR 141
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G V+V LI Y+ S KVFD+M ++ TW +M++GY + +F
Sbjct: 142 LGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSF 201
Query: 198 --------------------------NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
AL LF M+++ G +PT T+V VLS + +G
Sbjct: 202 FDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLE--GHRPTHVTIVGVLSACADIG 259
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291
L+ G +HGY K ++ + AL+DMY+K G ++ A +F ++ K+ TWT M
Sbjct: 260 ALDLGRVIHGYGSKC--NASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTM 317
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
+ + G G +A+ L M GV PN+VTF S+ +AC H+GL+EEG+ LFD M+ +
Sbjct: 318 ISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYK 377
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
++P ++HY C++DLLGR G LEEA I + ++PD ++WRSLLSAC V G+ L E G
Sbjct: 378 IDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAG 437
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
K +++ +P V +V L N+YAS+ +W + +R+QM ++ +PG S ++
Sbjct: 438 KEIVKREPGDDGV--------YVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIE 489
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 208/391 (53%), Gaps = 44/391 (11%)
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L L +G IH +V K+G + + V++ LI Y S +VFDQM + NA
Sbjct: 263 LEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAF 322
Query: 182 I-----NGYCSQS----KKAKD----------------CAFN-----ALVLFRDMLVDVS 211
I NG S ++ KD C+ N AL LFR+M ++
Sbjct: 323 IFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM--QIA 380
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
GVKP T+ C+L + L G H + + DV++G+AL+DMY+KCG +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGI--STDVYVGSALIDMYAKCGRIQ 438
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+ + F + KN++ W A+ G A+HGK EA+ + D M+ G KP+ ++FT + +AC
Sbjct: 439 ASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACS 498
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+GL EEG + F++M SK+G+E ++HY+C+V LL RAG LE+AY I +P+ PDA +W
Sbjct: 499 QSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVW 558
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
+LLS+C VH +V+LGE + L +L+P +++ LSNIYAS W +V
Sbjct: 559 GALLSSCRVHNNVSLGEVAAEKLFELEPS--------NPGNYILLSNIYASKGMWNEVNR 610
Query: 452 VRKQMKVKRVETEPGSSILQ--TTTHYTLDG 480
VR MK K + PG S ++ H L G
Sbjct: 611 VRDMMKNKGLRKNPGCSWIEVKNKVHMLLAG 641
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 182/412 (44%), Gaps = 51/412 (12%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S +Q HA ++ L L +L+ Y +T ++ V PN+F F+TL
Sbjct: 30 SQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLV----PEPNVFSFSTL 85
Query: 81 IRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
I ++ F+ +++GL+ D+ A+ +CA LS L RQ+H +
Sbjct: 86 IYAFSKFHQFHHALSTFSQMLTRGLMP-DNRVLPSAVKACA---GLSALKPARQVHGIAS 141
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS--KKAKD 194
GF + V ++L+H Y I +VFD+M +W+A++ Y Q +AK
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201
Query: 195 ---------------------CAFN-------ALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FN A+++F DM + G +P TT+ VL
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM--HLRGFEPDGTTISSVLPA 259
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
L L G +HGY+ K + +D + +AL+DMY KC C +F +M +V
Sbjct: 260 VGDLEDLVMGILIHGYVIKQGLV--SDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVG 317
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+ A G++ +G+ ++RL ++D G++ N V++TS+ A C G E L LF M
Sbjct: 318 SCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM 377
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAG---HLEEAYNFIMGIPIKPDAILWRSLL 395
+ GV+P+ C++ G H + A+ F + I D + +L+
Sbjct: 378 QIA-GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALI 428
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 131/263 (49%), Gaps = 18/263 (6%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
++L RQ H H+ K G + +AT L+ YA+N + V D +P + +++ +I
Sbjct: 27 ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86
Query: 183 NGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
+ +K F+ AL F ML G+ P + + + + L L+ VHG
Sbjct: 87 YAF------SKFHQFHHALSTFSQMLT--RGLMPDNRVLPSAVKACAGLSALKPARQVHG 138
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ + ++D F+ ++LV MY KC + +A +F RM E +V++W+A+ A G
Sbjct: 139 IASVSGF--DSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361
+EA RL M D GV+PN +++ + A H+GL E + +F +M + G EP +
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLR-GFEP---DGTT 252
Query: 362 IVDLLGRAGHLEEAYNFIMGIPI 384
I +L G LE+ +MGI I
Sbjct: 253 ISSVLPAVGDLED---LVMGILI 272
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+++ L G+ H +RG +V V + LI YA I + + FD +P ++ WNA
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I GY K A A+ +F L+ SG KP + CVLS SQ GL E G+
Sbjct: 458 VIAGYAMHGK-----AKEAMEIFD--LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMAIH 298
M Y E V +V + S+ G L+ A + RM + W A+ + +H
Sbjct: 511 NSMSSK-YGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVH 568
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 232/466 (49%), Gaps = 76/466 (16%)
Query: 66 FTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
T PN+F++N LI+ C+ P S L F + + ++ +TY +L + F S
Sbjct: 835 MTQMQKPNVFVYNALIKGFVTCSHPIRS-LEFYVRMLRDSVSPSSYTYS-SLVQASAFAS 892
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
G + H+ K GF F+V + TTLI FY+++ I +KVFD+MP R TW M
Sbjct: 893 ----GFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTM 948
Query: 182 INGY------------CSQSKKAKDCAFNALV--------------LFRDMLV-DV---- 210
++ Y +Q + + +N L+ LF M V D+
Sbjct: 949 VSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWT 1008
Query: 211 ------------------------SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
G+ P + TM V+S + LG+LE G VH Y +
Sbjct: 1009 TMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQN 1068
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
++ DV+IG+ALVDMYSKCG L+ ALL+F + +KN+ W ++ G+A HG EA++
Sbjct: 1069 GFVL--DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALK 1126
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
+ M VKPN VTF S+F AC HAGLVEEG ++ +M + + +++HY C+V L
Sbjct: 1127 MFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLF 1186
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
+AG + EA I + +P+A++W +LL C +H ++ + E L+ L+P
Sbjct: 1187 SKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEP------- 1239
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE-PGSSILQ 471
S + L ++YA RW DV +R +M+ +E PG+S ++
Sbjct: 1240 -MNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIR 1284
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 234/453 (51%), Gaps = 35/453 (7%)
Query: 25 KQIHAQLITNALKSPP--LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+ HAQ+I P +Y L+ +Y +K P S +++ P + T +
Sbjct: 26 RAAHAQIIKTLDNPLPSFIYNHLVNMY-SKLDRPNSAQLL----LSLTPNRSVVTWTALI 80
Query: 83 CTPPQDSVLVFAYW----VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
Q+ A + + + + +DFT+ A + SL + +G+Q+H K
Sbjct: 81 AGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASG---SLRSPLVGKQVHALAVKA 137
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + +V V + Y+ +K+FD+MP R+ ATWNA ++ + + D A
Sbjct: 138 GQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRY--DDALT 195
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A + R G++PTD + VLS + L +LE G VH K + ++F+G+
Sbjct: 196 AFIEARK-----EGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVV--GNIFVGS 248
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--- 315
ALVDMY KCG +++A F M E+N++TW AM G A G+ + A+ L D M CG
Sbjct: 249 ALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM-TCGSHR 307
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
V PN VTF + +AC AG V G+ +F++M+ ++G+EP +HY+C+VDLLGRAG +E+A
Sbjct: 308 VAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQA 367
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
Y FI +PI+P +W +LL A + G LG+ L +L P S + V
Sbjct: 368 YQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDP--------LDSGNHVL 419
Query: 436 LSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
LSN++A+A RW + VRK+MK ++ G S
Sbjct: 420 LSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCS 452
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 9/192 (4%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
+ P + +VS+Q L G H + KT P FI LV+MYSK ++
Sbjct: 4 LSPNSLASLVESAVSTQCSRL--GRAAHAQIIKTLDNPLPS-FIYNHLVNMYSKLDRPNS 60
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA--C 330
A L+ S ++V+TWTA+ G +G+ A+ +MR ++PN TF F A
Sbjct: 61 AQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGS 120
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
+ LV + +H + K G + D+ +AG EEA +P + A
Sbjct: 121 LRSPLVGKQVHA---LAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIAT- 176
Query: 391 WRSLLSACNVHG 402
W + LS + G
Sbjct: 177 WNAYLSNSVLEG 188
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 227/432 (52%), Gaps = 48/432 (11%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F PN+F + ++ R + V ++ KG+L D + + +C +
Sbjct: 419 LFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLP-DKYVFPKVFRACGQL- 476
Query: 121 SLSTLWL--GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
LWL G Q+H V G F++ V +LI Y+ + D+ SG++VFD+M R +W
Sbjct: 477 ----LWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSW 532
Query: 179 NAMINGYCSQSKKAKDC----------AFNALVL-FRDM-----------LVDVSGVKPT 216
N+MI+GYC + + A + +NA++L F D+ + SG+
Sbjct: 533 NSMISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNN 592
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+ VL L+ G VH Y+ K + + + + AL+ MYSKCGC+ A I
Sbjct: 593 QITISTVLPACD----LKSGKQVHAYITKNSF--SSVIPVWNALIHMYSKCGCIGTAYSI 646
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
FS M +++++W M G +HG G A++LL M V PN+VTFTS +AC H+GLV
Sbjct: 647 FSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLV 706
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
+EG+ LF M +G P ++H+SC+VDLL RA LE+A FI +P+KP +W +LL+
Sbjct: 707 DEGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLA 766
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
AC +V++ + + L QL+PE + ++V LSNIYA A RW D +VRK M
Sbjct: 767 ACRAQQNVSVAKLAAEQLFQLEPE--------HAGNYVTLSNIYARAGRWDDAVAVRKLM 818
Query: 457 KVKRVETEPGSS 468
+ + + G S
Sbjct: 819 EDRGLVKPSGYS 830
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 53/305 (17%)
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
SS + +FD++ + W A++ G+ S++ + +C + + +M + GV P
Sbjct: 414 SSAQALFDKLSQPNVFAWTAIL-GFYSRNGLSDEC----VRTYSEM--KLKGVLPDKYVF 466
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V QL LE G VH + E D+ + +L+DMYSK G + + +F M
Sbjct: 467 PKVFRACGQLLWLEVGIQVH--KDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEM 524
Query: 281 REKNVL-----------------------------TWTAMATGMAIHGKGNEAIRLLDSM 311
E++VL TW AM G G+ A+ M
Sbjct: 525 VERDVLSWNSMISGYCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKM 584
Query: 312 RDCGVKPNAVTFTSLFAAC-CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
+ G+ N +T +++ AC +G + +H + S V P ++ ++ + + G
Sbjct: 585 QRSGIMNNQITISTVLPACDLKSG---KQVHAYITKNSFSSVIP---VWNALIHMYSKCG 638
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
+ AY+ + I D + W +++ +HG +G+ LQL +++ DV S
Sbjct: 639 CIGTAYSIFSNM-ISRDLVSWNTMIGGFGMHG-------LGQFALQLLRDMSHSDVCPNS 690
Query: 431 EDFVA 435
F +
Sbjct: 691 VTFTS 695
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 184/329 (55%), Gaps = 23/329 (6%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N++ +T ++ Y+ I + + VF+QM + W+AMI+GY D AL L
Sbjct: 288 NLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES-----DSPQEALNL 342
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTA 259
F +M G+KP TM+ V++ + LG L+ +H +++K + +P I A
Sbjct: 343 FNEM--QSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALP-----INNA 395
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L++MY+KCG L+ A IF +M KNV++WT M + A+HG A+R M D ++PN
Sbjct: 396 LIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+TF + AC HAGLVEEG +F +M ++ + P HY C+VDL GRA L EA +
Sbjct: 456 GITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELV 515
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+P+ P+ I+W SL++AC VHG++ LGE K LL+L P+ V LSNI
Sbjct: 516 EAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPD--------HDGAHVFLSNI 567
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSS 468
YA A RW DV VRK MK K + E G S
Sbjct: 568 YAKARRWEDVGQVRKLMKHKGISKERGCS 596
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 217/464 (46%), Gaps = 65/464 (14%)
Query: 15 LKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L + T+ +H+KQ+HAQ++ + L +S L +L+ C A S VF P
Sbjct: 30 LSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSC---ALSSSLDYALSVFNLIPKPE 86
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
L N +R P+ ++LV+ ++GL D F++ L + +R SL G
Sbjct: 87 THLCNRFLRELSRSEEPEKTLLVYERMRTQGL-AVDRFSFPPLLKALSRVKSLVE---GL 142
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH K GF + V T L+ YA+ I+ + +FD+M R TW+ MI+GYC QS
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYC-QS 201
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEK--- 245
D AL+LF +M V+P + + VLS + G L +G +H + ME
Sbjct: 202 GLFND----ALLLFEEM--KNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIV 255
Query: 246 ----------TFY---------------MPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
T Y M ++ TA+V YSK G ++NA +F++M
Sbjct: 256 VDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQM 315
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG- 339
+K+++ W+AM +G A EA+ L + M+ G+KP+ VT S+ AC H G +++
Sbjct: 316 VKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAK 375
Query: 340 -LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+HLF + G P + ++++ + G LE A +P K + I W ++SA
Sbjct: 376 WIHLFVDKNGFGGALP---INNALIEMYAKCGSLERARRIFDKMPRK-NVISWTCMISAF 431
Query: 399 NVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFV 434
+HGD + Q++ E +TFV V AC+ V
Sbjct: 432 AMHGDAG---SALRFFHQMEDENIEPNGITFVGVLYACSHAGLV 472
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 17/241 (7%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF +L ++ +I PQ+++ +F S G+ D T + + +CA
Sbjct: 311 VFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKP-DQVTMLSVITACAHLG 369
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+L + IH+ V K GF + + LI YA + +++FD+MP ++ +W
Sbjct: 370 ALDQ---AKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTC 426
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+ + A +AL F M + ++P T V VL S GL+E G +
Sbjct: 427 MISAFAMHGD-----AGSALRFFHQM--EDENIEPNGITFVGVLYACSHAGLVEEGRKIF 479
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHG 299
M + V G +VD++ + L AL + M NV+ W ++ +HG
Sbjct: 480 YSMINEHNITPKHVHYG-CMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG 538
Query: 300 K 300
+
Sbjct: 539 E 539
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 208/386 (53%), Gaps = 20/386 (5%)
Query: 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
PQD++L+ + GL + FT L + + S L GRQ+H + G+ NV
Sbjct: 97 PQDALLLLPEMLRIGLKP-NQFTLASLLKAASGVGSTDVL-QGRQLHGLCLRYGYDSNVY 154
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
V+ ++ YA + + +FD M ++ +WNA+I GY + + K A LF +
Sbjct: 155 VSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDK-----AFCLFSN 209
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
ML + VKPT T VL + +G LE G VH M K + + F+G L+DMY+
Sbjct: 210 MLRE--NVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK--WGEKLVAFVGNTLLDMYA 265
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
K G +++A +F R+ +++V++W +M TG + HG G A++ + M + PN +TF
Sbjct: 266 KSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLC 325
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ AC HAGL++EG H FD MK K+ VEP I HY +VDLLGRAGHL+ A FI +PIK
Sbjct: 326 VLTACSHAGLLDEGRHYFDMMK-KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIK 384
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445
P A +W +LL AC +H ++ LG + + +L V L NIYA A R
Sbjct: 385 PTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGT--------HVLLYNIYALAGR 436
Query: 446 WPDVESVRKQMKVKRVETEPGSSILQ 471
W D VRK MK V+ EP S ++
Sbjct: 437 WNDAAKVRKMMKESGVKKEPACSWVE 462
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 163/312 (52%), Gaps = 20/312 (6%)
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R L+ L G+ IH + F ++++ TL++ YA D+ +K+FD+M R T
Sbjct: 24 RCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVT 83
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF-- 235
W A+I GY SQ + +D AL+L +ML G+KP T+ +L +S +G +
Sbjct: 84 WTALITGY-SQHDRPQD----ALLLLPEML--RIGLKPNQFTLASLLKAASGVGSTDVLQ 136
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +HG + Y +++V++ A++DMY++C L+ A LIF M KN ++W A+ G
Sbjct: 137 GRQLHGLCLRYGY--DSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGY 194
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A G+G++A L +M VKP T++S+ AC G +E+G + M KWG +
Sbjct: 195 ARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALM-IKWGEKLV 253
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+ ++D+ ++G +E+A + K D + W S+L+ + HG +GK+ L
Sbjct: 254 AFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSMLTGYSQHG-------LGKVAL 305
Query: 416 QLQPEVTFVDVA 427
Q E+ +A
Sbjct: 306 QRFEEMLRTRIA 317
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 9/200 (4%)
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
+ L R + +G + T+ L + L L G +H + + + +D+ +
Sbjct: 1 MELIRQQCKNNAGAREICHTL---LKRCTHLNKLNEGKIIHALLLNSRF--RDDLVMQNT 55
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L+++Y+KCG L A +F M ++V+TWTA+ TG + H + +A+ LL M G+KPN
Sbjct: 56 LLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPN 115
Query: 320 AVTFTSLFAACCHAGLVE--EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
T SL A G + +G L + ++G + ++ I+D+ R HLEEA
Sbjct: 116 QFTLASLLKAASGVGSTDVLQGRQLH-GLCLRYGYDSNVYVSCAILDMYARCHHLEEA-Q 173
Query: 378 FIMGIPIKPDAILWRSLLSA 397
I + + + + W +L++
Sbjct: 174 LIFDVMVSKNEVSWNALIAG 193
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 168/547 (30%), Positives = 257/547 (46%), Gaps = 111/547 (20%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQST-KIVHFVFTHFDPPN 73
LKA H++Q+HA +I L+ L+ L+ ++ + ST VF P+
Sbjct: 36 LKACKKREHLEQVHACIIHRGLEQDHF---LVFLFISRAHTLLSTLSYASSVFHRVLAPS 92
Query: 74 LFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
L+NTLI+ ++ ++ FA + G L D FTY + +C+ C G+
Sbjct: 93 TVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALP-DSFTYPSVIKACSGTCKARE---GK 148
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD--------------------- 168
+H + G ++ V T+LI Y +I+ +KVFD
Sbjct: 149 SLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVG 208
Query: 169 ----------QMPMRSSATWNAM-------------------------------INGYCS 187
+MP R+ A+WN+M I+GY
Sbjct: 209 DVVEARKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAK 268
Query: 188 QSKKAK-----DCAF---------------------NALVLFRDMLVDVSGVKPTDTTMV 221
A DC+ AL +F +M ++ VKP + +V
Sbjct: 269 AGDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEM--ELMNVKPDEFILV 326
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
++S S+QLG LE V Y+ K + D I AL+DM +KCG ++ AL +F
Sbjct: 327 SLMSASAQLGHLELAQWVDSYVSKICIDLQQDHVIA-ALLDMNAKCGNMERALKLFDEKP 385
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
++V+ + +M G++IHG+G EA+ L + M G+ P+ V FT + AC AGLV+EG +
Sbjct: 386 RRDVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRN 445
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F +MK K+ + P HY+C+VDLL R+GH+ +AY I IP +P A W +LL AC ++
Sbjct: 446 YFQSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLY 505
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GD LGE V L +L+P + ++V LS+IYA+AERW DV VR +M+ +RV
Sbjct: 506 GDSELGEIVANRLFELEP--------LNAANYVLLSDIYAAAERWIDVSLVRSKMRERRV 557
Query: 462 ETEPGSS 468
PGSS
Sbjct: 558 RKIPGSS 564
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 156/480 (32%), Positives = 239/480 (49%), Gaps = 58/480 (12%)
Query: 25 KQIHAQLITNALKSPP---LYAQLIQLYCTKKASPQSTKIVHFV-FTHFDPPNLFLFNTL 80
+Q+HA + L P L L+ LY + + K+ + +H D + + L
Sbjct: 32 EQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRIPHSHKDSVD---YTAL 88
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IRC+ P D+ L F + + L D + ALG+C++ L L Q+HV V K GF
Sbjct: 89 IRCSHPLDA-LRFYLQMRQRALPLDGVALICALGACSK---LGDSNLVPQMHVGVVKFGF 144
Query: 141 MFNVLVATTLIHFYASN-------------------------------KDISSGKKVFDQ 169
+ + V ++ Y + + SGK VFD+
Sbjct: 145 LRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDE 204
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-GVKPTDTTMVCVLSVSS 228
MP R+ W +I GY + A +L ++M+ G T+ VLS S
Sbjct: 205 MPERNEVAWTVLIKGYVGSGFTKE-----AFLLLKEMVFGCGFGFGLNSITLCSVLSACS 259
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
Q G + G VH Y K + V +GT+LVDMY+KCG + AL++F M +NV+ W
Sbjct: 260 QSGDVSVGRWVHCYAVKAVGW-DLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAW 318
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
AM G+A+HG G + + M + VKP+AVTF +L ++C H+GLVE+G F +++
Sbjct: 319 NAMLCGLAMHGMGKVVVEMFACMVE-EVKPDAVTFMALLSSCSHSGLVEQGWQYFHDLER 377
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
+G+ P I+HY+C+VDLLGRAG LEEA + + +PI P+ ++ SLL AC HG + LGE
Sbjct: 378 AYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLPIPPNEVVLGSLLGACYAHGKLRLGE 437
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
K+ + L+Q+ P +E + LSN+YA + S+RK +K + + PG S
Sbjct: 438 KIMRELVQMDP--------LNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMS 489
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/440 (22%), Positives = 173/440 (39%), Gaps = 99/440 (22%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFN--VLVATTLIHFYASNKDISSGKKVFDQM 170
L CAR S + G Q+H T G +F+ + L+H YAS S +K+FD++
Sbjct: 19 LRQCAR---ASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKLFDRI 75
Query: 171 PM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
P + S + A+I CS A + R + + GV ++C L S
Sbjct: 76 PHSHKDSVDYTALIR--CSHPLDA----LRFYLQMRQRALPLDGV-----ALICALGACS 124
Query: 229 QLG-----------LLEFGACVH---------GYME--------KTFY-MPENDVFIGTA 259
+LG +++FG H GY++ + F + E V T
Sbjct: 125 KLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTV 184
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DC--GV 316
+++ KC +++ ++F M E+N + WT + G G EA LL M C G
Sbjct: 185 VLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGF 244
Query: 317 KPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
N++T S+ +AC +G V G +H + W + + + +VD+ + G +
Sbjct: 245 GLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVG--TSLVDMYAKCGRISA 302
Query: 375 AYNFIMGIP---------------------------------IKPDAILWRSLLSACNVH 401
A +P +KPDA+ + +LLS+C+
Sbjct: 303 ALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEEVKPDAVTFMALLSSCSHS 362
Query: 402 GDVALGEKVGKILLQ---LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
G V G + L + ++PE+ E + + ++ A R + E + K++ +
Sbjct: 363 GLVEQGWQYFHDLERAYGIRPEI---------EHYACMVDLLGRAGRLEEAEDLVKKLPI 413
Query: 459 KRVETEPGSSILQTTTHYTL 478
E GS + H L
Sbjct: 414 PPNEVVLGSLLGACYAHGKL 433
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 210/375 (56%), Gaps = 28/375 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-------MFNVLVATTLIHFYASN 157
++ T V AL +CA + T GR +H + K G+ N+++AT ++ YA
Sbjct: 204 NEITMVNALIACAHSRDIDT---GRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKC 260
Query: 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217
+ + +F++MP R+ +WN+MIN Y +Q ++ ++ AL LF DM SGV P
Sbjct: 261 GRLKIARDLFNKMPQRNIVSWNSMINAY-NQYERHQE----ALDLFFDMWT--SGVYPDK 313
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T + VLSV + L G VH Y+ KT D+ + TAL+DMY+K G L NA IF
Sbjct: 314 ATFLSVLSVCAHQCALALGQTVHAYLLKTGI--ATDISLATALLDMYAKTGELGNAQKIF 371
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLV 336
S +++K+V+ WT+M G+A+HG GNEA+ + +M+ D + P+ +T+ + AC H GLV
Sbjct: 372 SSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLV 431
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
EE F M +G+ P +HY C+VDLL RAGH EA + + ++P+ +W +LL+
Sbjct: 432 EEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLN 491
Query: 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
C +H +V + +V L +L+P C S + LSNIYA A RW +V RK M
Sbjct: 492 GCQIHENVCVANQVKVRLKELEP--------CQSGVHILLSNIYAKAGRWEEVNVTRKVM 543
Query: 457 KVKRVETEPGSSILQ 471
K KR+ G S ++
Sbjct: 544 KHKRITKTIGHSSVE 558
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 189/389 (48%), Gaps = 25/389 (6%)
Query: 24 IKQIHAQLITN-ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+K++H ++T +KS ++LI +C + V P+++++N++IR
Sbjct: 20 LKKLHGLIVTTPTIKSIIPLSKLID-FCVD-SEFGDINYADLVLRQIHNPSVYIWNSMIR 77
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
P+ S+L++ + G + D FT+ F L +C C ++ G+ IH + K
Sbjct: 78 GFVNSHNPRMSMLLYRQMIENGY-SPDHFTFPFVLKAC---CVIADQDCGKCIHSCIVKS 133
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF + AT L+H Y S D+ SG KVFD +P + W +I GY ++ +
Sbjct: 134 GFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQ-----PYE 188
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-----END 253
AL +F DM V+P + TMV L + ++ G VH + K Y P ++
Sbjct: 189 ALKVFEDM--SHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSN 246
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+ + TA+++MY+KCG L A +F++M ++N+++W +M + + EA+ L M
Sbjct: 247 IILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWT 306
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
GV P+ TF S+ + C H + G + + K G+ I + ++D+ + G L
Sbjct: 307 SGVYPDKATFLSVLSVCAHQCALALGQTVHAYLL-KTGIATDISLATALLDMYAKTGELG 365
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHG 402
A + K D ++W S+++ +HG
Sbjct: 366 NAQKIFSSLQ-KKDVVMWTSMINGLAMHG 393
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 229/448 (51%), Gaps = 29/448 (6%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP--NLFLFNTL 80
H+ I +I ++ S L I LY ++ ++H + FD N +F
Sbjct: 1021 HVYAIKCGIINDSFVSTAL----IDLYSKGGKMDEAEFLLHGKYD-FDLASWNAIMFG-Y 1074
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
I+ + ++ F+ G+ D+ T A+ + C L L G+QI + K GF
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGI-PIDEITLATAIKASG--C-LINLKQGKQIQAYAIKLGF 1130
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
++ V++ ++ Y D+ + ++F ++ W MI+GY + D A +
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDE--DHALSVY 1188
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
L R VSGV+P + T ++ SS L LE G +H + K Y D F+GT+L
Sbjct: 1189 HLMR-----VSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL--DHFVGTSL 1241
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY KCG + +A +F +M + V+ W AM G+A HG +EA+ L +M+ G++P+
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF + +AC H+GL E FD M +G+ P I+HYSC+VD LGRAG ++EA N I
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIA 1361
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P K A ++R+LL AC GD ++V LL L P S +V LSNIY
Sbjct: 1362 SMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDP--------SDSSAYVLLSNIY 1413
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSS 468
A++ +W DV R MK+K V+ +PG S
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFS 1441
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 36/331 (10%)
Query: 77 FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
F TL+R T DSV T V L + L LG QIH V
Sbjct: 882 FKTLLRSTIGHDSV-----------------TLVIILSAA---VGADDLDLGEQIHALVI 921
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K F V V+ +L++ Y+ + + +K F P +WN MI+ Y +
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN-----NLE 976
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVL---SVSSQLGLLEFGACVHGYMEKTFYMPEND 253
A+ FRD+L D G+KP T+ VL S + G+ VH Y K + ND
Sbjct: 977 MEAICTFRDLLRD--GLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII--ND 1032
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F+ TAL+D+YSK G +D A + + ++ +W A+ G K +A+ M +
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092
Query: 314 CGVKPNAVTF-TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
G+ + +T T++ A+ C L ++G + K G + S ++D+ + G +
Sbjct: 1093 MGIPIDEITLATAIKASGCLINL-KQGKQI-QAYAIKLGFNNDLWVSSGVLDMYIKCGDM 1150
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
A + G +PD + W +++S +GD
Sbjct: 1151 PNALE-LFGEISRPDEVAWTTMISGYIENGD 1180
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 4/199 (2%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+++ L LG++ H + G + + + LI Y+ + S ++VFD+ R TWN+
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++ Y + + + LF L+ G T T+ +L + G ++ VH
Sbjct: 683 ILAAYAQFADSSYENVLEGFRLFG--LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVH 740
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY K + E D+F+ ALV++Y K G + A L+F +M E++ + W M +
Sbjct: 741 GYAVKIGF--ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798
Query: 301 GNEAIRLLDSMRDCGVKPN 319
+EA+R + G P+
Sbjct: 799 QDEALRFFSAFHRSGFFPD 817
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 160/501 (31%), Positives = 259/501 (51%), Gaps = 56/501 (11%)
Query: 7 HRCFALL-KLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHF 64
H +LL K K+I +KQ+HA +I+ L + P +++ L + ++ +
Sbjct: 15 HNLLSLLDKCKSIL---ELKQLHAVVISCGLSQDDPFISKI--LCFSALSNSGDINYSYR 69
Query: 65 VFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF+ P +F +NT+IR P S+ +F + G+ D TY F + + AR
Sbjct: 70 VFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAP-DYLTYPFLVKASARLL 128
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ T G +H H+ K G + + +LIH YA+ + +KVFD + ++ +WN+
Sbjct: 129 NQET---GVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNS 185
Query: 181 MINGYCS-----------QSKKAKDCAF---------------NALVLFRDMLVDVSGVK 214
M++GY +S KD A+ +F M +G K
Sbjct: 186 MLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKM--QSAGPK 243
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
+ TMV V + +G LE G ++ Y+ +P V + T+LVDMY+KCG ++ AL
Sbjct: 244 ANEVTMVSVSCACAHMGALEKGRMIYKYIVDNG-LPLTLV-LQTSLVDMYAKCGAIEEAL 301
Query: 275 LIFSRMR--EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
LIF R+ + +VL W A+ G+A HG E+++L M+ G+ P+ VT+ L AAC H
Sbjct: 302 LIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAH 361
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
GLV+E F+++ SK G+ P +HY+C+VD+L RAG L AY FI +P +P A +
Sbjct: 362 GGLVKEAWFFFESL-SKCGMTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLG 420
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452
+LLS C H ++AL E VG+ L++L+P ++ LSN+YA +RW D S+
Sbjct: 421 ALLSGCINHRNLALAEIVGRKLIELEPN--------HDGRYIGLSNMYAVDKRWDDARSM 472
Query: 453 RKQMKVKRVETEPGSSILQTT 473
R+ M+ + V+ PG S ++ +
Sbjct: 473 REAMERRGVKKSPGFSFVEIS 493
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 229/448 (51%), Gaps = 29/448 (6%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP--NLFLFNTL 80
H+ I +I ++ S L I LY ++ ++H + FD N +F
Sbjct: 1021 HVYAIKCGIINDSFVSTAL----IDLYSKGGKMDEAEFLLHGKYD-FDLASWNAIMFG-Y 1074
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
I+ + ++ F+ G+ D+ T A+ + C L L G+QI + K GF
Sbjct: 1075 IKSNKSRKALEHFSLMHEMGI-PIDEITLATAIKASG--C-LINLKQGKQIQAYAIKLGF 1130
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
++ V++ ++ Y D+ + ++F ++ W MI+GY + D A +
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDE--DHALSVY 1188
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
L R VSGV+P + T ++ SS L LE G +H + K Y D F+GT+L
Sbjct: 1189 HLMR-----VSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSL--DHFVGTSL 1241
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY KCG + +A +F +M + V+ W AM G+A HG +EA+ L +M+ G++P+
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
VTF + +AC H+GL E FD M +G+ P I+HYSC+VD LGRAG ++EA N I
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIA 1361
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P K A ++R+LL AC GD ++V LL L P S +V LSNIY
Sbjct: 1362 SMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDP--------SDSSAYVLLSNIY 1413
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSS 468
A++ +W DV R MK+K V+ +PG S
Sbjct: 1414 AASRQWDDVTDARNMMKLKNVKKDPGFS 1441
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 36/331 (10%)
Query: 77 FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
F TL+R T DSV T V L + L LG QIH V
Sbjct: 882 FKTLLRSTIGHDSV-----------------TLVIILSAA---VGADDLDLGEQIHALVI 921
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K F V V+ +L++ Y+ + + +K F P +WN MI+ Y +
Sbjct: 922 KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN-----NLE 976
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVL---SVSSQLGLLEFGACVHGYMEKTFYMPEND 253
A+ FRD+L D G+KP T+ VL S + G+ VH Y K + ND
Sbjct: 977 MEAICTFRDLLRD--GLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII--ND 1032
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F+ TAL+D+YSK G +D A + + ++ +W A+ G K +A+ M +
Sbjct: 1033 SFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHE 1092
Query: 314 CGVKPNAVTF-TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372
G+ + +T T++ A+ C L ++G + K G + S ++D+ + G +
Sbjct: 1093 MGIPIDEITLATAIKASGCLINL-KQGKQI-QAYAIKLGFNNDLWVSSGVLDMYIKCGDM 1150
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
A + G +PD + W +++S +GD
Sbjct: 1151 PNALE-LFGEISRPDEVAWTTMISGYIENGD 1180
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 4/199 (2%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+++ L LG++ H + G + + + LI Y+ + S ++VFD+ R TWN+
Sbjct: 623 AMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNS 682
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
++ Y + + + LF L+ G T T+ +L + G ++ VH
Sbjct: 683 ILAAYAQFADSSYENVLEGFRLFG--LLREFGFSITRLTLAPLLKLCLLSGFVQVSETVH 740
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY K + E D+F+ ALV++Y K G + A L+F +M E++ + W M +
Sbjct: 741 GYAVKIGF--ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798
Query: 301 GNEAIRLLDSMRDCGVKPN 319
+EA+R + G P+
Sbjct: 799 QDEALRFFSAFHRSGFXPD 817
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/361 (36%), Positives = 198/361 (54%), Gaps = 24/361 (6%)
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170
FA + A C L L G+QIH V K F +++ V + ++ Y ++ S +KVF+Q+
Sbjct: 503 FANAAKAAGC-LVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQI 561
Query: 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
P W +I+G ++ + AL + M ++GV+P + T ++ S L
Sbjct: 562 PSPDDVAWTTVISGCVENGEEEQ-----ALFTYHQM--RLAGVQPDEYTFATLVKACSLL 614
Query: 231 GLLEFGACVHGYMEK---TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LE G +H + K F D F+ T+LVDMY+KCG +++A +F RM ++V
Sbjct: 615 TALEQGKQIHANIMKLNCAF-----DPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVAL 669
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W AM G+A HG EA+ + M+ GV P+ VTF + +AC H+GL + FD+M+
Sbjct: 670 WNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQ 729
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+GVEP I+HYSC+VD L RAGH++EA + +P + A ++R+LL+AC V GD G
Sbjct: 730 KTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETG 789
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467
E+V + L + P S +V LSNIYA+A +W + S R MK V+ EPG
Sbjct: 790 ERVAEKLFTMDPS--------DSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGF 841
Query: 468 S 468
S
Sbjct: 842 S 842
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 21/303 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D TY+ L A SL+ L LG+QIH V + G+ V VA + I+ Y ++ +
Sbjct: 296 DSLTYIVILSVVA---SLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYAR 352
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++F QM +WN +I+G C++S ++C+ L LF D+L SG+ P T+ VL
Sbjct: 353 RMFGQMKEVDLISWNTVISG-CARSG-LEECS---LRLFIDLLR--SGLLPDQFTITSVL 405
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPEN---DVFIGTALVDMYSKCGCLDNALLIFSRMR 281
S L E CV G T + D F+ TAL+D+YSK G ++ A L+F
Sbjct: 406 RACSSL---EESYCV-GRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
++ +W AM G + EA+RL M + G K + +TF + A +++G
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521
Query: 342 LFD-NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ +K ++ + + S I+D+ + G ++ A IP PD + W +++S C
Sbjct: 522 IHAVVIKMRFHYDLFV--ISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVE 578
Query: 401 HGD 403
+G+
Sbjct: 579 NGE 581
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 7/222 (3%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNA 180
S L LG++ H + G + V LI YA + S +K+FD P R T+NA
Sbjct: 27 SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNA 86
Query: 181 MINGYCSQSK-KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ Y + + A +FR L+ S + T T+ + + G +
Sbjct: 87 ILAAYAHTGELHDVEKTHEAFHIFR--LLRQSVMLTTRHTLSPLFKLCLLYGSPSASEAL 144
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
GY K + DVF+ ALV++Y+K + A ++F RM ++V+ W M G
Sbjct: 145 QGYAVKIGL--QWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMG 202
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
G+E + L + G++P+ V+ ++ + E L
Sbjct: 203 AGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELE 244
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 206/350 (58%), Gaps = 18/350 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L LGR + + LV + L+ Y +I+ ++VFD + + WNAMI G
Sbjct: 270 LVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITG 329
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + A+ LF M ++G++P T+ VLS S +G LE G+ + GY
Sbjct: 330 YAQNG-----MSNEAISLFHSM--RIAGMRPDKITLAGVLSACSAVGALELGSELDGYAS 382
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ ++V++GTALVDMY+KCG LD A+ +F +M KNV +W A+ G+A +G+G+EA
Sbjct: 383 RRGLY--SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEA 440
Query: 305 IRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
I+ MR + G+KP+ +TF + +AC HAGLV++G F+++ ++ + P I+HYSC+V
Sbjct: 441 IQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMV 500
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLL R+GHLEEA++FI IP K DA++ +LL+AC +V +GE+V ++QL+P
Sbjct: 501 DLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEP---- 556
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S ++V S IYAS++R D +R M+ + V PG S ++ +
Sbjct: 557 ----TNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVS 602
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 178/374 (47%), Gaps = 27/374 (7%)
Query: 72 PNLFLFNTLIR---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
P F +N IR + P S+ +F + + + + D +T F L + AR+ + S L
Sbjct: 116 PTAFSYNVAIRFFASSRPHTSLRLFLHML-RSAIRPDSYTLPFLLLAAARYPAPS---LA 171
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R H + K G + +LI Y+ D + +KVFD +P R +WNAM+ Y
Sbjct: 172 RAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR- 230
Query: 189 SKKAKDCAFNALV--LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
N V +FRDM V V P T+ VL+ G L G V +
Sbjct: 231 ------VGMNGEVGRMFRDM-VKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSA 283
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
E D +G+AL+ MY KCG + A +F + +K+++ W AM TG A +G NEAI
Sbjct: 284 RM--EMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAIS 341
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L SMR G++P+ +T + +AC G +E G L D S+ G+ ++ + +VD+
Sbjct: 342 LFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL-DGYASRRGLYSNVYVGTALVDMY 400
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGE-KVGKILLQLQP-EVT 422
+ G L++A +P K + W +L+ A N GD A+ ++ + L+P ++T
Sbjct: 401 AKCGDLDKAIEVFRKMPCK-NVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDIT 459
Query: 423 FVDV--ACTSEDFV 434
F+ V AC V
Sbjct: 460 FIGVLSACVHAGLV 473
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 198/364 (54%), Gaps = 20/364 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F L L GR IH V K G + +L YA +++ K +FD+M + W
Sbjct: 232 FTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILW 291
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI+GY A A+ +F +M+ V+P ++ +S +Q+G LE
Sbjct: 292 NAMISGYAKNGY-----AREAIDMFHEMIN--KDVRPDTISITSAISACAQVGSLEQARS 344
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
++ Y+ ++ Y +DVFI +AL+DM++KCG ++ A L+F R +++V+ W+AM G +H
Sbjct: 345 MYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ EAI L +M GV PN VTF L AC H+G+V EG F+ M + P +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH-KINPQQQH 461
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y+C++DLLGRAGHL++AY I +P++P +W +LLSAC H V LGE + L +
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
P T +V LSN+YA+A W V VR +MK K + + G S ++ L
Sbjct: 522 PSNT--------GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR--L 571
Query: 479 DGFR 482
+ FR
Sbjct: 572 EAFR 575
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 195/396 (49%), Gaps = 28/396 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ + T + +KQIHA+L+ L+ S L +LI +S VF P
Sbjct: 28 IDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH----ASSSFGDITFARQVFDDLPRPQ 83
Query: 74 LFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+F +N +IR QD++L+++ + ++ D FT+ L +C+ LS L +GR
Sbjct: 84 IFPWNAIIRGYSRNNHFQDALLMYSN-MQLARVSPDSFTFPHLLKACS---GLSHLQMGR 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNAMINGYCS 187
+H V + GF +V V LI YA + + S + VF+ +P+ R+ +W A+++ Y
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ AL +F M VKP +V VL+ + L L+ G +H + K
Sbjct: 200 NGE-----PMEALEIFSQM--RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
E D+ I +L MY+KCG + A ++F +M+ N++ W AM +G A +G EAI +
Sbjct: 253 LEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLL 366
M + V+P+ ++ TS +AC G +E+ +++ + +S + + I S ++D+
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMF 368
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G +E A + + D ++W +++ +HG
Sbjct: 369 AKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 230/449 (51%), Gaps = 30/449 (6%)
Query: 25 KQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+QIH + N L L L+ +Y ++ ++ K+ F N ++ ++
Sbjct: 230 RQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKM----FDSSGDRNSITWSAMVTG 285
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ +++ +F+ S G+ ++T V L +C+ C L G+Q+H + K G
Sbjct: 286 YSQNGESLEAIKLFSRMFSAGIKP-SEYTIVGVLNACSDICYLVE---GKQLHSFLLKLG 341
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F ++ T L+ YA ++ +K FD + R A W ++I+GY S + A
Sbjct: 342 FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEE-----A 396
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L+L+R M +G+ P D TM VL S L LE G VHG+ K + E V IG+A
Sbjct: 397 LILYRRM--KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE--VPIGSA 452
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L MY+KCG L++ L+F R K+V++W AM +G++ +G+G+EA+ L + M G +P+
Sbjct: 453 LSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPD 512
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF ++ +AC H G VE G F M ++G++P + HY+C+VD+L RAG L+E FI
Sbjct: 513 DVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEFI 572
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
I LWR LLSAC HG+ LG G+ L+ L S +V L+ I
Sbjct: 573 ESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSR--------ESSTYVQLAGI 624
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSS 468
Y + R DVE V K M+ V E G S
Sbjct: 625 YTALGRMRDVERVWKLMRTNGVSKEVGCS 653
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 22/277 (7%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
SL + +GRQ H V K ++ V T+L+ Y K + M W
Sbjct: 132 SLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYC--------KAGLKYLYMVYYGFWLC 183
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+ K+ C L + +D VLS + + G +H
Sbjct: 184 YKKDVLRRQLKSSIC----------FLEEKEKESDSDYVFTAVLSSLAATVYVGLGRQIH 233
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G K + V + ALV MYSKC L+ A +F ++N +TW+AM TG + +G+
Sbjct: 234 GITVKNGLL--GFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 291
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EAI+L M G+KP+ T + AC + EG L + K G E H+ +
Sbjct: 292 SLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLL-KLGFERHLFATT 350
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+VD+ +AG L +A + + D LW SL+S
Sbjct: 351 ALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLISG 386
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR +H + + G A L++FYA ++ +F+ + + +WN++I GY
Sbjct: 35 GRAVHAQIIRTGTSTCTQHANVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQ 94
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + + LFR+M + P T+ + S L G H + K
Sbjct: 95 NGGISS--SHTVMQLFREM--RAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMS 150
Query: 248 YMPENDVFIGTALVDMYSKCG 268
D+++ T+LV MY K G
Sbjct: 151 SF--GDIYVDTSLVGMYCKAG 169
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG---KGNEAIRLLDSMRDCGV 316
LV+ Y+KCG L A IF+ + K+V++W ++ TG + +G + ++L MR +
Sbjct: 57 LVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDI 116
Query: 317 KPNAVTFTSLFAA 329
PNA T +F A
Sbjct: 117 LPNAYTLAGIFKA 129
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/367 (35%), Positives = 197/367 (53%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT V L +CAR L T G ++ K G NV VAT + Y ++ +
Sbjct: 176 DSFTAVRVLTACARVADLVT---GEEVWTAAEKEGIAGNVFVATAAVDLYVKCGEMDKAR 232
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD+M + W AM+ GY S + AL LF M V+ G++P T+ L
Sbjct: 233 GVFDKMKNKDVVAWGAMVGGYASNGHPRE-----ALELFFAMQVE--GMRPDCYTVAGAL 285
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++LG L+ G V G ++ + + +GTAL+DMY+KCG A ++F +MR ++
Sbjct: 286 SACTRLGALDLGRRVVGMLQWDEVL--GNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRD 343
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++ W AM G+ + G A L+ M+ G+ N TF L +C H GLV++G F
Sbjct: 344 IIVWNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFR 403
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
NM + + P I+HY +VDLL RAG L+EA+ I +P++ +A++W +LL C +H +
Sbjct: 404 NMTQLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNA 463
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
L E V K L+QL+P S ++V LSNIY+++ RW D +R +MK K VE
Sbjct: 464 DLAEHVLKQLIQLEP--------WNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKV 515
Query: 465 PGSSILQ 471
P SS ++
Sbjct: 516 PASSWVE 522
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 16/298 (5%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
T+ FA+ S +R L G Q+H K N V T+L++ YA + +K
Sbjct: 75 LTFPFAIKSASRLPD--PLTAGAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKA 132
Query: 167 FDQMPM-RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
FD+M S+ +W A+I Y + A+ + R SGV+P T V VL+
Sbjct: 133 FDEMRQPPSTVSWTALITAYMDAGR-----GLEAIGVARSAF--ASGVRPDSFTAVRVLT 185
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+++ L G V EK +VF+ TA VD+Y KCG +D A +F +M+ K+V
Sbjct: 186 ACARVADLVTGEEVWTAAEKEGI--AGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDV 243
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
+ W AM G A +G EA+ L +M+ G++P+ T +AC G ++ G +
Sbjct: 244 VAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGM 303
Query: 346 MKSKWG-VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ +W V + + ++D+ + G EA+ + + D I+W +++ + G
Sbjct: 304 L--QWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNR-DIIVWNAMILGLGMTG 358
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 9/178 (5%)
Query: 233 LEFGACVHGYMEKTFYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTA 290
L GA +H ++ +P ++ + T+L+++Y++CG L +A F MR+ + ++WTA
Sbjct: 91 LTAGAQLHA---RSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTA 147
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350
+ T G+G EAI + S GV+P++ T + AC + G ++ K
Sbjct: 148 LITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVW-TAAEKE 206
Query: 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVAL 406
G+ ++ + VDL + G +++A + K D + W +++ A N H AL
Sbjct: 207 GIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNK-DVVAWGAMVGGYASNGHPREAL 263
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 237/477 (49%), Gaps = 48/477 (10%)
Query: 10 FALLKLKAITTPSHIKQIHAQLI-TNALKSPPLYAQLIQLY--CTK--------KASPQS 58
FA+ A++ P KQ+H + T L P + LI +Y C+ +PQS
Sbjct: 15 FAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQS 74
Query: 59 TKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALG 114
K+ +N+L+ + +D V++F G+ + V LG
Sbjct: 75 RKLT------------VCYNSLLSGYALNSRVKDVVVLFCEMRELGV----EINGVTMLG 118
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
L LG +H K G + V L+ Y + +I G+K+FD+MP +
Sbjct: 119 LVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKG 178
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
TWNAMINGY A N L L+++M + G P T+V VLS + LG L
Sbjct: 179 LITWNAMINGYAQNG-----LANNVLELYKEM--ESKGFCPDPLTLVGVLSSCAHLGALS 231
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G V ME + ++ F+ ALV+MY++CG L A IF M K+V++WTA+ G
Sbjct: 232 VGKEVERKMEGFGF--SSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGG 289
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP 354
+HG+G A+ L D M G+KP+ F S+ +AC HAGL +GL F M+ K+G+ P
Sbjct: 290 YGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRP 349
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414
+HYSC+VDLLGRAG L EA I + ++ D LW +LL AC +H +V L E + +
Sbjct: 350 GAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQV 409
Query: 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++L+P T +V LSN+Y A + VR M+ ++++ +PG S ++
Sbjct: 410 IELEPTNTGY--------YVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVE 458
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 170/333 (51%), Gaps = 27/333 (8%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
FT+ FA+ SCA +LS G+Q+H HV K G + V T+LI Y I + +K+
Sbjct: 11 FTFPFAIKSCA---ALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67
Query: 167 FDQMPMRSSAT--WNAMINGYCSQSKKAKDCAFNALVLF---RDMLVDVSGVKPTDTTMV 221
FD+ P T +N++++GY S + KD +VLF R++ V+++GV TM+
Sbjct: 68 FDENPQSRKLTVCYNSLLSGYALNS-RVKD----VVVLFCEMRELGVEINGV-----TML 117
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
++ G L G CVHG+ K + + D +G L+ MY K G +D +F M
Sbjct: 118 GLVQPCGIPGNLGLGMCVHGFCVK--FGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMP 175
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
K ++TW AM G A +G N + L M G P+ +T + ++C H G + G
Sbjct: 176 RKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE 235
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ M+ +G + + +V++ R G+L++A + G+P+K + W +++ +H
Sbjct: 236 VERKMEG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVK-SVVSWTAIIGGYGMH 293
Query: 402 --GDVALGEKVGKILLQLQPEVT-FVDV--ACT 429
G+VA+G I ++P+ T FV V AC+
Sbjct: 294 GQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACS 326
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/495 (30%), Positives = 263/495 (53%), Gaps = 57/495 (11%)
Query: 15 LKAITTPSHIKQ---IHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
LK I +++ IHA ++ L+ P + L+ +Y T+ VF
Sbjct: 115 LKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQ----VFEEMP 170
Query: 71 PPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
+ +N +I RC +++V V+ + ++ T V L +CA L L
Sbjct: 171 ERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACA---VLRNLE 227
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY- 185
LG++IH ++ ++ L+ Y +S +++FD M +++ W +M+ GY
Sbjct: 228 LGKEIHDYIANE-LDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYV 286
Query: 186 -CSQSKKAKD--------------------CAFN----ALVLFRDMLVDVSGVKPTDTTM 220
C Q +A+ FN A+ LF +M + GV+P +
Sbjct: 287 ICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEM--QIRGVEPDKFIV 344
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V +L+ +QLG LE G +H Y+++ + D + TAL++MY+KCGC++ +L IF+ +
Sbjct: 345 VTLLTGCAQLGALEQGKWIHNYIDEN--RIKMDAVVSTALIEMYAKCGCIEKSLEIFNGL 402
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
++ + +WT++ G+A++GK +EA+ L ++M+ CG+KP+ +TF ++ +AC HAGLVEEG
Sbjct: 403 KDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGR 462
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI---LWRSLLSA 397
LF +M S + +EP+++HY C +DLLGRAG L+EA + +P + + I L+ +LLSA
Sbjct: 463 KLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSA 522
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C +G++ +GE++ L +++ + S L++IYASA+RW DV VR +MK
Sbjct: 523 CRTYGNIDMGERLATALAKVK--------SSDSSLHTLLASIYASADRWEDVRKVRSKMK 574
Query: 458 VKRVETEPGSSILQT 472
++ PG S ++
Sbjct: 575 DLGIKKVPGYSAIEV 589
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 113/404 (27%), Positives = 190/404 (47%), Gaps = 36/404 (8%)
Query: 8 RCFALLK------LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
+C LLK LK+ + S +KQI A + L+ + + + +S
Sbjct: 2 QCSKLLKGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAF-SMDSSLGDFNY 60
Query: 62 VHFVFTHFDPPNLFLFNTLIRCTPPQDS----VLVFAYWVSKGLLTFDDFTYVFALGSCA 117
+ +F H P+LF++N +I+ + S + +F +G+ D++TY + L
Sbjct: 61 ANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWP-DNYTYPYVLKGIG 119
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ + G +IH V K G F+ V +L+ YA + +VF++MP R + +
Sbjct: 120 ---CIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVS 176
Query: 178 WNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
WN MI+GY C + ++A D ++R M ++ S KP + T+V LS + L LE
Sbjct: 177 WNIMISGYVRCKRFEEAVD-------VYRRMQME-SNEKPNEATVVSTLSACAVLRNLEL 228
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +H Y+ + +G AL+DMY KCGC+ A IF M KNV WT+M TG
Sbjct: 229 GKEIHDYIANELDLTP---IMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGY 285
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
I G+ ++A L + + V +T++ E+ + LF M+ + GVEP
Sbjct: 286 VICGQLDQARYLFER----SPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIR-GVEPD 340
Query: 356 IKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLS 396
++ + G LE+ +N+I IK DA++ +L+
Sbjct: 341 KFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIE 384
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNV----LTWTAMATGMAIHGKGNEAIRLLD 309
+FI ++ + K G L +A+ +F ++RE+ V T+ + G+ G+ E ++
Sbjct: 73 LFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHA 132
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+ G++ + SL GLVE +F+ M + V +I ++ R
Sbjct: 133 FVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNI-----MISGYVRC 187
Query: 370 GHLEEAYNFIMGIPI----KPDAILWRSLLSACNVHGDVALGEKV 410
EEA + + + KP+ S LSAC V ++ LG+++
Sbjct: 188 KRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEI 232
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 206/350 (58%), Gaps = 18/350 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L LGR + + LV + L+ Y +I+ ++VFD + + WNAMI G
Sbjct: 270 LVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITG 329
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + A+ LF M ++G++P T+ VLS S +G LE G+ + GY
Sbjct: 330 YAQNG-----MSNEAISLFHSM--RIAGMRPDKITLAGVLSACSAVGALELGSELDGYAS 382
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ ++V++GTALVDMY+KCG LD A+ +F +M KNV +W A+ G+A +G+G+EA
Sbjct: 383 RRGLY--SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEA 440
Query: 305 IRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
I+ MR + G+KP+ +TF + +AC HAGLV++G F+++ ++ + P I+HYSC+V
Sbjct: 441 IQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMV 500
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLL R+GHLEEA++FI IP K DA++ +LL+AC +V +GE+V ++QL+P
Sbjct: 501 DLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEP---- 556
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S ++V S IYAS++R D +R M+ + V PG S ++ +
Sbjct: 557 ----TNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVS 602
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 178/374 (47%), Gaps = 27/374 (7%)
Query: 72 PNLFLFNTLIR---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
P F +N IR + P S+ +F + + + + D +T F L + AR+ + S L
Sbjct: 116 PTAFSYNVAIRFFASSRPHTSLRLFLHML-RSAIRPDSYTLPFLLLAAARYPAPS---LA 171
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R H + K G + +LI Y+ D + +KVFD +P R +WNAM+ Y
Sbjct: 172 RAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR- 230
Query: 189 SKKAKDCAFNALV--LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
N V +FRDM V V P T+ VL+ G L G V +
Sbjct: 231 ------VGMNGEVGRMFRDM-VKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSA 283
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
E D +G+AL+ MY KCG + A +F + +K+++ W AM TG A +G NEAI
Sbjct: 284 RM--EMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAIS 341
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L SMR G++P+ +T + +AC G +E G L D S+ G+ ++ + +VD+
Sbjct: 342 LFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL-DGYASRRGLYSNVYVGTALVDMY 400
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGE-KVGKILLQLQP-EVT 422
+ G L++A +P K + W +L+ A N GD A+ ++ + L+P ++T
Sbjct: 401 AKCGDLDKAIEVFRKMPCK-NVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDIT 459
Query: 423 FVDV--ACTSEDFV 434
F+ V AC V
Sbjct: 460 FIGVLSACVHAGLV 473
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 206/350 (58%), Gaps = 18/350 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L LGR + + LV + L+ Y +I+ ++VFD + + WNAMI G
Sbjct: 270 LVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITG 329
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y + A+ LF M ++G++P T+ VLS S +G LE G+ + GY
Sbjct: 330 YAQNGMSNE-----AISLFHSM--RIAGMRPDKITLAGVLSACSAVGALELGSELDGYAS 382
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ ++V++GTALVDMY+KCG LD A+ +F +M KNV +W A+ G+A +G+G+EA
Sbjct: 383 RRGLY--SNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNGRGDEA 440
Query: 305 IRLLDSMR-DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
I+ MR + G+KP+ +TF + +AC HAGLV++G F+++ ++ + P I+HYSC+V
Sbjct: 441 IQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEHYSCMV 500
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
DLL R+GHLEEA++FI IP K DA++ +LL+AC +V +GE+V ++QL+P
Sbjct: 501 DLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLEP---- 556
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S ++V S IYAS++R D +R M+ + V PG S ++ +
Sbjct: 557 ----TNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVS 602
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 178/374 (47%), Gaps = 27/374 (7%)
Query: 72 PNLFLFNTLIR---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
P F +N IR + P S+ +F + + + + D +T F L + AR+ + S L
Sbjct: 116 PTAFSYNVAIRFFASSRPHTSLRLFLHML-RSAIRPDSYTLPFLLLAAARYPAPS---LA 171
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
R H + K G + +LI Y+ D + +KVFD +P R +WNAM+ Y
Sbjct: 172 RAAHALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGR- 230
Query: 189 SKKAKDCAFNALV--LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
N V +FRDM V V P T+ VL+ G L G V +
Sbjct: 231 ------VGMNGEVGRMFRDM-VKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSA 283
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
E D +G+AL+ MY KCG + A +F + +K+++ W AM TG A +G NEAI
Sbjct: 284 RM--EMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAIS 341
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L SMR G++P+ +T + +AC G +E G L D S+ G+ ++ + +VD+
Sbjct: 342 LFHSMRIAGMRPDKITLAGVLSACSAVGALELGSEL-DGYASRRGLYSNVYVGTALVDMY 400
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVALGE-KVGKILLQLQP-EVT 422
+ G L++A +P K + W +L+ A N GD A+ ++ + L+P ++T
Sbjct: 401 AKCGDLDKAIEVFRKMPCK-NVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDIT 459
Query: 423 FVDV--ACTSEDFV 434
F+ V AC V
Sbjct: 460 FIGVLSACVHAGLV 473
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 196/363 (53%), Gaps = 30/363 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D F+ V L +CAR ++ G I +++ G NV VAT+L+ Y ++
Sbjct: 214 DSFSLVKVLAACARLGDCTS---GEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-----ALVLFRDMLVDVSGVKPTDTT 219
+F MP + +W+ MI GY AFN AL LF M +KP T
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGY----------AFNGLPQQALDLFFQM--QSENLKPDCYT 318
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV VLS + LG L+ G M++ ++ ++ +GTAL+DMYSKCG + A IF+
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFL--SNPVLGTALIDMYSKCGSVTQAWEIFTA 376
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M++K+ + W AM G++++G L + G++P+ TF L C H G V EG
Sbjct: 377 MKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEG 436
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F+NMK + + P I+HY C+VDLLGRAG L EA+ I +P+KP+A++W +LL C
Sbjct: 437 RQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCK 496
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H D L E+V K L++L+P S ++V LSNIY+ RW + E +R MK +
Sbjct: 497 LHKDTHLAEQVLKKLIELEP--------WNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548
Query: 460 RVE 462
+++
Sbjct: 549 QIQ 551
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 121/420 (28%), Positives = 210/420 (50%), Gaps = 37/420 (8%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ +K IHA+L+ L LI L C ST VF+ PN+FL+NT+I
Sbjct: 30 NQLKHIHARLLRLHLDQDNYLLNLI-LCCALDFG--STNYSKLVFSQVKEPNIFLWNTMI 86
Query: 82 RCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + D++ ++ G L ++FT F L +CAR + LG +IH + K
Sbjct: 87 RGLVSKDCFDDAIHLYGSMRGGGFLP-NNFTIPFVLKACARKLDVR---LGLKIHSLLVK 142
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G+ +V V T+L+ Y + KVFD +P ++ +W A+I GY S +
Sbjct: 143 AGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFRE---- 198
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A+ F+ +L G+KP ++V VL+ ++LG G + Y+ + M N VF+
Sbjct: 199 -AIGAFKKLL--EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS-GMGRN-VFVA 253
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T+L+DMY KCG L+ A LIFS M EK++++W+ M G A +G +A+ L M+ +K
Sbjct: 254 TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLK 313
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ T + +AC G ++ G+ M ++++ P + + ++D+ + G + +A+
Sbjct: 314 PDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAW 371
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDV-------ALGEKVGKILLQLQP-EVTFVDVAC 428
+ K D ++W +++ +++G +L EK G ++P E TF+ + C
Sbjct: 372 EIFTAMK-KKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG-----IRPDENTFIGLLC 425
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 155/337 (45%), Gaps = 35/337 (10%)
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN 143
+P L ++S GL F+ ++ A R + +H+ + ++ N
Sbjct: 9 SPVFSKALEIKNYLSNGLNFFNQLKHIHA----------------RLLRLHLDQDNYLLN 52
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
+++ L F ++N K VF Q+ + WN MI G S KDC +A+ L+
Sbjct: 53 LILCCAL-DFGSTN----YSKLVFSQVKEPNIFLWNTMIRGLVS-----KDCFDDAIHLY 102
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
M G P + T+ VL ++ + G +H + K Y ++DVF+ T+L+ +
Sbjct: 103 GSM--RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY--DHDVFVKTSLLSL 158
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y KC D+AL +F + +KNV++WTA+ TG G EAI + + G+KP++ +
Sbjct: 159 YVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSL 218
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ AAC G G D S G+ ++ + ++D+ + G+LE A N I
Sbjct: 219 VKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA-NLIFSAM 276
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+ D + W +++ +G L ++ + Q+Q E
Sbjct: 277 PEKDIVSWSTMIQGYAFNG---LPQQALDLFFQMQSE 310
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 213/371 (57%), Gaps = 20/371 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
DDFTY L +CA L +L G +H K G + V++T++ Y I+ +
Sbjct: 453 DDFTYGSVLKACA---GLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQ 509
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+ D++ + +WN++I+G+ S +K++++ A F +ML D+ GVKP T VL
Sbjct: 510 KLHDRIGGQELVSWNSIISGF-SLTKQSEE----AQRFFSEML-DM-GVKPDHFTYATVL 562
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ L +E G +HG + K + D +I + LVDMY+KCG + ++LL+F + R+ +
Sbjct: 563 DTCANLATIELGKQIHGQIIKQEML--GDEYISSTLVDMYAKCGNMPDSLLMFEKARKLD 620
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
++W AM G A+HG+G EA+ + + M+ V PN TF ++ AC H GL+++G F
Sbjct: 621 FVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFH 680
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M S++ + P ++H++C+VD+LGR+ +EA FI +PI+ DA++W++LLS C + DV
Sbjct: 681 LMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDV 740
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ E +L+L P+ V ++ LSN+YA + +W DV R+ M+ R+ E
Sbjct: 741 EVAETAASNVLRLDPDDASV--------YILLSNVYAGSGKWVDVSRTRRLMRQGRLRKE 792
Query: 465 PGSSILQTTTH 475
PG S ++ +
Sbjct: 793 PGCSWIEVQSE 803
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 132/312 (42%), Gaps = 38/312 (12%)
Query: 100 GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
G + F++++ L + A +L+T G+ H + GFM V+ L+ YA
Sbjct: 13 GFVATATFSHLYQLCASAGRSALTT---GQAAHARMLVSGFMPTTFVSNCLLQMYARCGG 69
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA------------FNALV------ 201
+ VFD MP R + +WN M+ Y + +N L+
Sbjct: 70 TAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQH 129
Query: 202 -LFRD-----MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
+FR+ M + GV TT+ +L L L G +H KT E DV
Sbjct: 130 GMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGL--ETDVR 187
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
G+ALVDMY KC LD+AL F M E+N ++W A G + + + L M+ G
Sbjct: 188 AGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLG 247
Query: 316 VKPNAVTFTSLFAAC----CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
+ + + S F +C C + + H N+ S V + IVD+ +AG+
Sbjct: 248 LGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVG-----TAIVDVYAKAGN 302
Query: 372 LEEAYNFIMGIP 383
L +A +G+P
Sbjct: 303 LVDARRAFIGLP 314
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 19/337 (5%)
Query: 65 VFTHFDPPNLFLFNTLIR--CTPP--QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F P++ +NTLI C ++SV + +G+ D T L SC
Sbjct: 107 LFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGV-ALDRTTLAVLLKSCG--- 162
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L L LG QIH K G +V + L+ Y + + + F M R+S +W A
Sbjct: 163 GLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGA 222
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
I G C Q+++ + LF M G+ + + + L +H
Sbjct: 223 AIAG-CVQNEQYT----RGMELFVQM--QRLGLGVSQPAYASAFRSCAAMPCLSTARQLH 275
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
+ K + +D +GTA+VD+Y+K G L +A F + NV T AM G+ G
Sbjct: 276 AHAIKNVF--SSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGL 333
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA++L M GV + ++ + +F+AC +GL + + K G + + +
Sbjct: 334 GAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVH-CLAVKSGFDVDVCVRN 392
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
I+DL G+ L EAY + + D++ W ++++A
Sbjct: 393 AILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAA 428
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 50/345 (14%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
Y A SCA LST RQ+H H K F + +V T ++ YA ++ ++ F
Sbjct: 254 AYASAFRSCAAMPCLST---ARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAF 310
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+P + T NAM+ G A+ A+ LF+ M SGV ++ V S
Sbjct: 311 IGLPHHNVETCNAMMVGLVRTGLGAE-----AMQLFQFMTR--SGVGFDVISLSGVFSAC 363
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+++ G VH K+ + + DV + A++D+Y KC L A L+F M +++ ++
Sbjct: 364 AEVKGYFQGLQVHCLAVKSGF--DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVS 421
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
W A+ + + + I L+ M G++P+ T+ S+ AC +E GL + +
Sbjct: 422 WNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAI 481
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHL-------------------------------EEA 375
KS G++ + S +VD+ + G + EEA
Sbjct: 482 KSGLGLDAFVS--STVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEA 539
Query: 376 YNF---IMGIPIKPDAILWRSLLSACNVHGDVALGEKV-GKILLQ 416
F ++ + +KPD + ++L C + LG+++ G+I+ Q
Sbjct: 540 QRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQ 584
>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 824
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/417 (33%), Positives = 225/417 (53%), Gaps = 25/417 (5%)
Query: 65 VFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
VF ++ +NT+I D L+ Y + K D T V AL S A +
Sbjct: 379 VFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYIT-VTALLSAA--SN 435
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ--MPMRSSATWN 179
L +G+Q H + ++G F + + LI YA + I +K+F+ R ATWN
Sbjct: 436 LRNKEIGKQTHGFLIRQGIQFEGM-NSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWN 494
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+MI+GY + ++FR ML ++P T+ +L SQ+G ++ G +
Sbjct: 495 SMISGYTQNGHTEE-----TFLVFRKMLEQ--NIRPNAVTVASILPACSQVGSVDLGKQL 547
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG+ + + + +VF+ +ALVDMYSK G + A +FS+ +E+N +T+T M G HG
Sbjct: 548 HGFSIRQYL--DQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHG 605
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G AI L SM++ G+KP+A+ F ++ +AC ++GLV+EGL +F++M+ + ++P +HY
Sbjct: 606 MGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHY 665
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
CI D+LGR G + EAY F+ G+ + + A LW SLL +C +HG++ L E V + L +L
Sbjct: 666 CCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLD 725
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
F V LSN+YA + W V+ VRK M+ K ++ E G S ++ H
Sbjct: 726 KGKNFSGYE------VLLSNMYAEEQNWKSVDRVRKGMREKGLKKEVGRSGIEVAGH 776
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/433 (23%), Positives = 187/433 (43%), Gaps = 59/433 (13%)
Query: 25 KQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQST------KIVHFVFTHFDPPNLFLF 77
K +H LI S + + L+ +Y + +P S +V VF + N+ +
Sbjct: 127 KAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAW 186
Query: 78 NTLI----RCTPPQDSVLVFAYWVSKGLLTFD-DFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLI + ++ FA + + F VF + +R + ++ G +
Sbjct: 187 NTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYGLMLK 246
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ ++ ++ V ++ I YA D+ S ++VFD R+ WN MI Y
Sbjct: 247 L---GDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQN---- 299
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
DC ++ LF + + + + T + S S L +E G HG++ K F E
Sbjct: 300 -DCLVESIELFLEA-IGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNF--REL 355
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ I +L+ MYS+CG + + +F MRE++V++W M + +G +E + L+ M+
Sbjct: 356 PIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ 415
Query: 313 DCGVKPNAVTFTSLFAACC-----------HAGLVEEGLHLFDNMKS-------KWGV-- 352
G K + +T T+L +A H L+ +G+ F+ M S K G+
Sbjct: 416 KQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQ-FEGMNSYLIDMYAKSGLIR 474
Query: 353 ------------EPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSA 397
E ++ ++ + GH EE + ++ I+P+A+ S+L A
Sbjct: 475 ISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPA 534
Query: 398 CNVHGDVALGEKV 410
C+ G V LG+++
Sbjct: 535 CSQVGSVDLGKQL 547
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 108/254 (42%), Gaps = 36/254 (14%)
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+++FD +P ++ WN +I G+ + AL+ + M K T
Sbjct: 59 RQLFDAIPKPTTVLWNTIIIGFI-----CNNLPHEALLFYSRMKKTAPFTKCDAYTYSST 113
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC--------GCLDNALL 275
L ++ L+ G VH ++ + + + + +L++MY C C + ++
Sbjct: 114 LKACAETKNLKAGKAVHCHLIRC--LQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVV 171
Query: 276 --IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+F MR KNV+ W + + G+ EA R M +KP+ V+F ++F A +
Sbjct: 172 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATS 231
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHY---SCIVDLLGRAGHLE--------------EAY 376
+++ ++F + K G E ++K S + + G LE E +
Sbjct: 232 RSIKKA-NVFYGLMLKLGDE-YVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVW 289
Query: 377 NFIMGIPIKPDAIL 390
N ++G+ ++ D ++
Sbjct: 290 NTMIGVYVQNDCLV 303
>gi|357137130|ref|XP_003570154.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Brachypodium distachyon]
Length = 622
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 238/458 (51%), Gaps = 33/458 (7%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+++ HA+ + L P +A+ + C + P + +F D P F +NTL+R
Sbjct: 58 VRKAHARHVKLGLDRSPRHARPLLAACALGSWPGGMEYAAAIFAALDEPEAFDYNTLMRG 117
Query: 84 ----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
P ++ ++A + +G+ D +T+ F L +CAR L+ GRQ+H HV K G
Sbjct: 118 HVAHDDPAAALRLYAAMLEQGVEP-DRYTFPFVLKACAR---LAASGQGRQLHGHVAKLG 173
Query: 140 F-MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA--KDC- 195
F + V +LI FY + ++ F+QM S T + + ++ DC
Sbjct: 174 FSQHDEHVGNSLISFYGRCGEPELARRAFEQMEAEESTTAASWSALLAAYTRAGLWADCL 233
Query: 196 -AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH-GYMEKTFYMPEND 253
+F A+ +G +P +++MV LS + LG + G +H + T + +
Sbjct: 234 DSFGAMAR--------AGGRPEESSMVSALSACAHLGAYDVGRSIHCALLRNTVAL---N 282
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F+ T+LVDMY+KCGC+D A +F M KN T++AM +G+A+HG G +A+++ D+M
Sbjct: 283 TFMETSLVDMYAKCGCIDKASAVFDAMDGKNEWTYSAMVSGLALHGDGLKALQVFDAMAR 342
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
G KP+ + + AC +GL+EEGL FD M+ + V P+ +HY C+VDL+ RAG L+
Sbjct: 343 EGHKPDEAVYVGILNACSRSGLLEEGLRCFDRMRLEHKVAPNAQHYGCMVDLMARAGRLD 402
Query: 374 EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
+A I +P P WRSLL+AC +HG+V L E+ + L + A + D+
Sbjct: 403 DARALIGSMPTGPTDAAWRSLLNACRIHGNVELAERALQGLSGIG--------AVNAGDY 454
Query: 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V L++++A + W ++R + + + PG S ++
Sbjct: 455 VILADMHARTKNWDAAAALRTEAANRGLAQAPGFSAVE 492
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 208/390 (53%), Gaps = 55/390 (14%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA----------------- 155
+ +CAR+ +++ G+Q+H + K GF V TL+HFY
Sbjct: 284 MKACARYSAVTE---GQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDK 340
Query: 156 --------------SNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
N I +++FD MP R + +W+ MI+GY + AL
Sbjct: 341 SHTASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDM-----ALK 395
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-MEKTFYMPENDVFIGTAL 260
LF ML + ++P + T+ LS + G L+ G +H Y M + + +N + + L
Sbjct: 396 LFYSMLN--TSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDN---LSSGL 450
Query: 261 VDMYSKCGCLDNALLIFSRMREK--NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+DMY+KCG + +A+ F+R+ +K +V W AM +AIHG + ++ L ++ +KP
Sbjct: 451 IDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N++TF + +ACCHAG V +G + F++M ++G++P IKHY C+VDLLGRAG+LEEA
Sbjct: 511 NSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
+ +P+KPD ++W S+LSA G+VALGE+ + L +L +ALSN
Sbjct: 571 VSMMPMKPDVVIWGSILSASRAQGNVALGERAAEELAKLDQ--------THGASKIALSN 622
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSS 468
IYA A W +V VRK+++ +E G S
Sbjct: 623 IYADAGHWTNVSVVRKELQDANLERLTGRS 652
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 164/388 (42%), Gaps = 72/388 (18%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L R +V VF +S+ ++ ++ T A+ + AR + +T+ + IH
Sbjct: 115 LVTAFARAGHAARAVAVFRSMLSENVVP-NEATLAGAITAFARCGAPATVGM---IHGFA 170
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
+R V+VAT L+H YA ++ S + +FD M R++ TWN M+NGY KAK
Sbjct: 171 LQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTHRNTVTWNVMLNGYV----KAKMI 226
Query: 196 AFNALVLFR-------------------DMLVDVS----------GVKPTDTTMVCVLSV 226
A V +R D++ D G + +V ++
Sbjct: 227 DMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVLLVDLMKA 286
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD--------------- 271
++ + G +H + K + + F+ LV Y CG +
Sbjct: 287 CARYSAVTEGQQLHTVILKNGF--DALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSHTA 344
Query: 272 --NALL--------------IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
NALL +F M E++ ++W+ M +G G+ + A++L SM +
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
++PN VT S +A +G +++G + D + ++ V+ S ++D+ + G + +A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNR-PVQLTDNLSSGLIDMYAKCGSIADA 463
Query: 376 YNFIMGIPIKPDAIL-WRSLLSACNVHG 402
F + K ++ W +++ + +HG
Sbjct: 464 VQFFNRVNDKFSSVSPWNAMICSLAIHG 491
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 240/468 (51%), Gaps = 62/468 (13%)
Query: 42 YAQLIQLYCTKKASPQSTKIVH-FVFTHFDPPNLFLFNTLIRC----------------T 84
Y++LI+ C + + Q ++VH VF++ P FL NTLI
Sbjct: 19 YSELIKC-CLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77
Query: 85 PPQDSV----LVFAYWVSK---GLLTF-----------DDFTYVFALGSCARFCSLSTLW 126
P ++ V ++ AY S L F + +TY L +C +L
Sbjct: 78 PDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---- 133
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
RQ+H + K G +V V + LI Y+ + VF++M WN++I G+
Sbjct: 134 --RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
S + + D + D S T+ VL + L LLE G VH ++ K
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQS-------TLTSVLRACTGLALLELGRQVHVHVLKY 244
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIHGKGNEAI 305
+ D+ + AL+DMY KCG L++A L+F+RM EK+V++W+ M G+A +G +A+
Sbjct: 245 ----DQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADAL 300
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+L ++M+ G KPN +T + AC HAGLV +G + F +MK +G++P +HY CI+DL
Sbjct: 301 KLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDL 360
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG L+EA I + +PDA+ WR LL AC VH +V L K +L+L P
Sbjct: 361 LGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDP------ 414
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+ ++ LSNIYA++++W DV VR++M+ + V+ +PG S ++ +
Sbjct: 415 --ADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVS 460
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 204/346 (58%), Gaps = 18/346 (5%)
Query: 129 RQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
R +H + +RG++ V++ ++ YA I S KVF+ +P++ +WN +I+GY
Sbjct: 394 RSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQ 453
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
A A+ ++R M+ + +K T V +L+ + +G L+ G +HG++ KT
Sbjct: 454 NG-----LASEAIEVYR-MMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTN 507
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
DVF+GT L+D+Y KCG L +A+ +F ++ ++ + W A+ + IHG G +A++L
Sbjct: 508 L--HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKL 565
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M+D GVKP+ VTF SL +AC H+GLV+EG F M+ ++G++P +KHY C+VDLLG
Sbjct: 566 FREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMVDLLG 624
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG LE AY+FI +P+ PDA +W +LL AC +HG++ LG+ L ++ E
Sbjct: 625 RAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSE------- 677
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+V LSNIYA+ +W V+ VR + + ++ PG S ++
Sbjct: 678 -NVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVN 722
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 29/385 (7%)
Query: 25 KQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K++HA L+ + ++S + +L+ LY AS + F +++ +N++I
Sbjct: 93 KRLHALLVVSGKIQSNFISIRLVNLY----ASLGDVSLSRGTFDQIQRKDVYTWNSMISA 148
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
R ++++ F + D +T+ L +C TL GR+IH V K G
Sbjct: 149 YVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC------QTLVDGRKIHCWVFKLG 202
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F ++V VA +LIH Y+ + + +FD MP R +WNAMI+G A+ A
Sbjct: 203 FQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQ-----A 257
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L + +M ++ G+ T+ +L V +QLG + +H Y+ K + E ++F+ A
Sbjct: 258 LDVLDEMRLE--GINMDSVTVASILPVCAQLGDISTATLIHLYVIK--HGLEFELFVSNA 313
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L++MY+K G L +A +F +M ++V++W ++ + A M+ G++P+
Sbjct: 314 LINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPD 373
Query: 320 AVTFTSL--FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
+T SL AA +H F M+ W +E + + ++D+ + G ++ A+
Sbjct: 374 LLTLVSLASIAAQSRDYKNSRSVHGF-IMRRGWLMEAVVIG-NAVMDMYAKLGVIDSAHK 431
Query: 378 FIMGIPIKPDAILWRSLLSACNVHG 402
IP+K D + W +L+S +G
Sbjct: 432 VFNLIPVK-DVVSWNTLISGYTQNG 455
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 153/325 (47%), Gaps = 27/325 (8%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F S + L +++H + G + + ++ L++ YAS D+S + FDQ+ + TW
Sbjct: 83 FDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTW 142
Query: 179 NAMINGYCSQS--KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
N+MI+ Y ++A DC F L+L D P C V G
Sbjct: 143 NSMISAYVRNGHFREAIDC-FYQLLLVTKFQADFYTFPP--VLKACQTLVD--------G 191
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H ++ K + + DVF+ +L+ MYS+ G + A +F M +++ +W AM +G+
Sbjct: 192 RKIHCWVFKLGF--QWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEP 354
+G +A+ +LD MR G+ ++VT S+ C G + +HL+ K G+E
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLY---VIKHGLEF 306
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD--VALGEKVGK 412
+ + ++++ + G+L +A + ++ D + W S+++A + D A G
Sbjct: 307 ELFVSNALINMYAKFGNLGDAQKVFQQMFLR-DVVSWNSIIAAYEQNDDPVTARGFFFKM 365
Query: 413 ILLQLQPE----VTFVDVACTSEDF 433
L L+P+ V+ +A S D+
Sbjct: 366 QLNGLEPDLLTLVSLASIAAQSRDY 390
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 10/185 (5%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A + + L G +IH H+ K +V V T LI Y + +F Q+P SS
Sbjct: 485 AAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSV 544
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WNA+I+ + K AL LFR+M GVKP T + +LS S GL++ G
Sbjct: 545 PWNAIISCHGIHGHGEK-----ALKLFREM--QDEGVKPDHVTFISLLSACSHSGLVDEG 597
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGM 295
M++ P + +VD+ + G L+ A M + W A+
Sbjct: 598 KWFFHLMQEYGIKPSLKHY--GCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGAC 655
Query: 296 AIHGK 300
IHG
Sbjct: 656 RIHGN 660
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 208/379 (54%), Gaps = 30/379 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L SC R S L LG+QIH + K + ++ V ++L+ YA I +
Sbjct: 151 NEFTFATVLTSCIR---ASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAR 207
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++F+ +P R + A+I GY + AL +F+ + G++P T +L
Sbjct: 208 EIFECLPERDVVSCTAIIAGYAQLGLDEE-----ALEMFQRL--QSEGMRPNYVTYASLL 260
Query: 225 SVSSQLGLLEFGACVHGYM---EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+ S L LL+ G H ++ E FY + +L+DMYSKCG L A +F M
Sbjct: 261 TALSGLALLDHGKQAHCHVLRRELPFY-----AVLQNSLIDMYSKCGNLSYAQRLFDNMP 315
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGL 340
E+ ++W AM G + HG G E + L MRD VKP+AVT ++ + C H + + GL
Sbjct: 316 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGL 375
Query: 341 HLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
++D M ++G++P +HY CIVD+LGRAG ++EA+ FI +P KP A + SLL AC
Sbjct: 376 SIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 435
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
VH V +GE VG L++++PE + ++V LSN+YASA RW DV +VR M K
Sbjct: 436 VHLSVDIGEYVGHRLIEIEPE--------NAGNYVILSNLYASAGRWEDVNNVRAMMMQK 487
Query: 460 RVETEPGSSILQ--TTTHY 476
V EPG S +Q T HY
Sbjct: 488 AVTKEPGRSWIQHEQTLHY 506
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 152/297 (51%), Gaps = 22/297 (7%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H H+ K ++ + T L+ FY + +KV D+MP ++ +W AMI+ Y S
Sbjct: 70 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY-S 128
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
Q+ + + AL +F +M+ S KP + T VL+ + L G +HG + K
Sbjct: 129 QTGHSSE----ALSVFAEMM--RSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWN 182
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y ++ +F+G++L+DMY+K G ++ A IF + E++V++ TA+ G A G EA+ +
Sbjct: 183 Y--DSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 240
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG----LHLFDNMKSKWGVEPHIKHYSCIV 363
++ G++PN VT+ SL A L++ G H+ + V + ++
Sbjct: 241 FQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ-----NSLI 295
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
D+ + G+L A +P + AI W ++L + HG LG +V ++ ++ E
Sbjct: 296 DMYSKCGNLSYAQRLFDNMPERT-AISWNAMLVGYSKHG---LGREVLELFRLMRDE 348
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L G VH +M KT Y+P ++ T L+ Y KC CL++A + M EKNV++WTAM
Sbjct: 67 LREGQRVHAHMIKTRYLPA--TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMI 124
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
+ + G +EA+ + M KPN TF ++ +C A + G + + KW
Sbjct: 125 SRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIH-GLIVKWNY 183
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
+ HI S ++D+ +AG +EEA +P + D + ++++ + + L E+ +
Sbjct: 184 DSHIFVGSSLLDMYAKAGQIEEAREIFECLPER-DVVSCTAIIAG---YAQLGLDEEALE 239
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNI 439
+ +LQ E + + ALS +
Sbjct: 240 MFQRLQSEGMRPNYVTYASLLTALSGL 266
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 195/363 (53%), Gaps = 30/363 (8%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D F+ V L +CAR ++ G I +++ G NV VAT+L+ Y ++
Sbjct: 214 DSFSLVKVLAACARLGDCTS---GEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERAN 270
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN-----ALVLFRDMLVDVSGVKPTDTT 219
+F MP + +W+ MI GY AFN AL LF M +KP T
Sbjct: 271 LIFSAMPEKDIVSWSTMIQGY----------AFNGLPQQALDLFFQM--QSENLKPDCYT 318
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
MV VLS + LG L+ G M++ ++ ++ +GTAL+DMYSKCG + A IF+
Sbjct: 319 MVGVLSACATLGALDLGIWASSLMDRNEFL--SNPVLGTALIDMYSKCGSVTQAWEIFTA 376
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M+ K+ + W AM G++++G L + G++P+ TF L C H G V EG
Sbjct: 377 MKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEG 436
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
F+NMK + + P I+HY C+VDLLGRAG L EA+ I +P+KP+A++W +LL C
Sbjct: 437 RQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCK 496
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H D L E+V K L++L+P S ++V LSNIY+ RW + E +R MK +
Sbjct: 497 LHKDTHLAEQVLKKLIELEP--------WNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQ 548
Query: 460 RVE 462
+++
Sbjct: 549 QIQ 551
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 210/420 (50%), Gaps = 37/420 (8%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ +K IHA+L+ L LI L C ST VF+ PN+FL+NT+I
Sbjct: 30 NQLKHIHARLLRLHLDQDNYLLNLI-LCCALDFG--STNYSKLVFSQVKEPNIFLWNTMI 86
Query: 82 RCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + D++ ++ G L ++FT F L +CAR + LG +IH + K
Sbjct: 87 RGLVSKDCFDDAIHLYGSMRGGGFLP-NNFTIPFVLKACARKLDVR---LGLKIHSLLVK 142
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
G+ +V V T+L+ Y + KVFD +P ++ +W A+I GY S +
Sbjct: 143 AGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFRE---- 198
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
A+ F+ +L G+KP ++V VL+ ++LG G + Y+ + M N VF+
Sbjct: 199 -AIGAFKKLL--EMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS-GMGRN-VFVA 253
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
T+L+DMY KCG L+ A LIFS M EK++++W+ M G A +G +A+ L M+ +K
Sbjct: 254 TSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLK 313
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
P+ T + +AC G ++ G+ M ++++ P + + ++D+ + G + +A+
Sbjct: 314 PDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYSKCGSVTQAW 371
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDV-------ALGEKVGKILLQLQP-EVTFVDVAC 428
+ + D ++W +++ +++G +L EK G ++P E TF+ + C
Sbjct: 372 EIFTAMK-RKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG-----IRPDENTFIGLLC 425
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 155/337 (45%), Gaps = 35/337 (10%)
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN 143
+P L ++S GL F+ ++ A R + +H+ + ++ N
Sbjct: 9 SPVFSKALEIKNYLSNGLNFFNQLKHIHA----------------RLLRLHLDQDNYLLN 52
Query: 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203
+++ L F ++N K VF Q+ + WN MI G S KDC +A+ L+
Sbjct: 53 LILCCAL-DFGSTN----YSKLVFSQVKEPNIFLWNTMIRGLVS-----KDCFDDAIHLY 102
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
M G P + T+ VL ++ + G +H + K Y ++DVF+ T+L+ +
Sbjct: 103 GSM--RGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY--DHDVFVKTSLLSL 158
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y KC D+AL +F + +KNV++WTA+ TG G EAI + + G+KP++ +
Sbjct: 159 YVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSL 218
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ AAC G G D S G+ ++ + ++D+ + G+LE A N I
Sbjct: 219 VKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERA-NLIFSAM 276
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+ D + W +++ +G L ++ + Q+Q E
Sbjct: 277 PEKDIVSWSTMIQGYAFNG---LPQQALDLFFQMQSE 310
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/428 (32%), Positives = 210/428 (49%), Gaps = 54/428 (12%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA------------------ 117
L N IRC QD+ VF L D ++ +G CA
Sbjct: 573 LINMYIRCGSLQDARNVF-----HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE 627
Query: 118 -------------RFCSLST-LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
+ C+ S L G+++ ++ G+ + V LI Y+ + ++
Sbjct: 628 GFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDA 687
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
++VFD+MP R +WN +I GY F + +D++ P + V +
Sbjct: 688 REVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVV-------PNKFSFVSL 740
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L+ S LE G VH + K + DV +G AL+ MY+KCG A +F + EK
Sbjct: 741 LNACSSFSALEEGKRVHAEIVKRKL--QGDVRVGAALISMYAKCGSQGEAQEVFDNIIEK 798
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
NV+TW AM A HG ++A+ + M G+KP+ TFTS+ +AC HAGLV EG +F
Sbjct: 799 NVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIF 858
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
+M+S++GV P I+HY C+V LLGRA +EA I +P PDA +W +LL AC +HG+
Sbjct: 859 SSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGN 918
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+AL E L+L V ++ LSN+YA+A RW DV +R+ M+ + +
Sbjct: 919 IALAEHAANNALKLNARNPAV--------YILLSNVYAAAGRWDDVAKIRRVMEGRGIRK 970
Query: 464 EPGSSILQ 471
EPG S ++
Sbjct: 971 EPGRSWIE 978
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 197/423 (46%), Gaps = 30/423 (7%)
Query: 15 LKAITTPSHI---KQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L A +P+ + K+IH+Q+I + P + L+ +Y P++ + VF
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ----VFAGIS 190
Query: 71 PPNLFLFNTLIRCTPPQDSVL----VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P ++ +NT++ + V +F S+G+ + D TY+ L + F + S L
Sbjct: 191 PRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDA---FTTPSMLD 246
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
G++IH + G ++ V T L+ D+ S K+ F R +NA+I
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALA 306
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
+ AF R GV TT + +L+ S LE G +H ++ +
Sbjct: 307 QHGHNVE--AFEQYYRMRS-----DGVALNRTTYLSILNACSTSKALEAGKLIHSHISED 359
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ +DV IG AL+ MY++CG L A +F M ++++++W A+ G A EA+R
Sbjct: 360 GH--SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMR 417
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L M+ GVKP VTF L +AC ++ +G + +++ + G++ + + ++++
Sbjct: 418 LYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL-RSGIKSNGHLANALMNMY 476
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL--QLQPE-VTF 423
R G L EA N G + D I W S+++ HG K+ + + +L+P+ +TF
Sbjct: 477 RRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535
Query: 424 VDV 426
V
Sbjct: 536 ASV 538
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 168/357 (47%), Gaps = 21/357 (5%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T++ L +CA + + G+ IH + + G N +A L++ Y + + VF
Sbjct: 433 TFLHLLSACANSSAYAD---GKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVF 489
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ R +WN+MI G+ A LF++M + ++P + T VLS
Sbjct: 490 EGTQARDVISWNSMIAGHAQHGSYE-----TAYKLFQEMQNEE--LEPDNITFASVLSGC 542
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LE G +HG + ++ + DV +G AL++MY +CG L +A +F ++ ++V++
Sbjct: 543 KNPEALELGKQIHGRITESGL--QLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS 600
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
WTAM G A G+ +AI L M++ G +P TF+S+ C + ++EG + +
Sbjct: 601 WTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYIL 660
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALG 407
+ G E + ++ ++G + +A +P + D + W +++ +G LG
Sbjct: 661 NS-GYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAGYAQNG---LG 715
Query: 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ + Q+Q + DV FV+L N +S + + V ++ ++++ +
Sbjct: 716 QTAVEFAYQMQEQ----DVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 136/295 (46%), Gaps = 14/295 (4%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV L +C R L ++IH + + ++ ++ LI+ Y + + +VF
Sbjct: 29 TYVALLQNCTR---KRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+MP R +WN++I+ Y Q K K A LF +M +G P T + +L+
Sbjct: 86 KEMPRRDVISWNSLISCYAQQGFKKK-----AFQLFEEM--QNAGFIPNKITYISILTAC 138
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
LE G +H + K Y + D + +L+ MY KCG L A +F+ + ++V++
Sbjct: 139 YSPAELENGKKIHSQIIKAGY--QRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+ M A E + L M G+ P+ VT+ +L A +++EG + +
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIH-KLT 255
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G+ I+ + +V + R G ++ A G + D +++ +L++A HG
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNALIAALAQHG 309
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 99/196 (50%), Gaps = 9/196 (4%)
Query: 204 RDMLVDVSGVKPTDT---TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
R+ + + +PT+T T V +L ++ LL +H M + + P D+F+ L
Sbjct: 11 REDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGP--DIFLSNLL 68
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
++MY KC + +A +F M ++V++W ++ + A G +A +L + M++ G PN
Sbjct: 69 INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+T+ S+ AC +E G + +K+ + +P ++ + ++ + G+ G L A
Sbjct: 129 ITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ--NSLLSMYGKCGDLPRARQVF 186
Query: 380 MGIPIKPDAILWRSLL 395
GI + D + + ++L
Sbjct: 187 AGISPR-DVVSYNTML 201
>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 695
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 209/390 (53%), Gaps = 25/390 (6%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
+ +V+ F +GL+ D L + L WL R IH V K GF V V
Sbjct: 202 EAAVIAFRDMRREGLVGADQHVLCSVLSASG---GLKDGWLARAIHSCVMKSGFEQEVAV 258
Query: 147 ATTLIHFYASNKDISSGKKV--FDQMPMRS-SATWNAMINGYCSQSKKAKDCAFNALVLF 203
L YA D+ + +V DQ + SAT ++I+GY DC AL++F
Sbjct: 259 RNALTDMYAKAADMDNAARVVKIDQGSLNVVSAT--SLIDGYIET-----DCIEKALLMF 311
Query: 204 RDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM 263
++ GV+P + T ++ + LLE GA +H + KT + +D F+ + L+DM
Sbjct: 312 IEL--RRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLI--SDSFVSSTLLDM 367
Query: 264 YSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323
Y KCG + ++ +F + + W A +A HG G EAIR D M G++PN +TF
Sbjct: 368 YGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITF 427
Query: 324 TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
SL AC HAGLV+EGL F +MK G+EP +HYSCI+D+ GRAG L+EA FI +P
Sbjct: 428 VSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMP 487
Query: 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443
+KP+A W SLL AC + G+ LGE +++L+P+ T V V+LS IYAS
Sbjct: 488 VKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGV--------HVSLSGIYASL 539
Query: 444 ERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+W DV++VRK M+ R++ PG S + +
Sbjct: 540 GQWEDVKAVRKLMRDNRIKKLPGFSWVDSN 569
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 125/286 (43%), Gaps = 19/286 (6%)
Query: 98 SKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYAS 156
S+ L T L SC R L LGR +H + G + +A LI Y+
Sbjct: 9 SRSLDTATSLRLAAPLQSCGR---AGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSH 65
Query: 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
D+ S ++FD MP + +W +++G +Q+ +D AL F M +G+ PT
Sbjct: 66 CADVPSAVRLFDAMPRPNLVSWTTLVSGL-TQNSMHRD----ALAAFSSMCR--AGLVPT 118
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
+ ++ L GA +H + + E +F+ + L DMYSK G L A +
Sbjct: 119 QFALSSAARAAAALAARHAGAQLHCVGVRLGFDAE--LFVASNLADMYSKSGLLVEACRV 176
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGL 335
F +M +K+ + WTAM G A +G A+ MR G V + S+ +A +G
Sbjct: 177 FDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSA---SGG 233
Query: 336 VEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
+++G + K G E + + + D+ +A ++ A +
Sbjct: 234 LKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVV 279
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/401 (33%), Positives = 217/401 (54%), Gaps = 21/401 (5%)
Query: 72 PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
P F+ + + + ++ +F + + + + FT+ L + A + +L L + I
Sbjct: 215 PWSFMISRFAQSGQSEKALEIFCQ-MRRAFVIPNQFTFSSVLQASA---DIESLDLSKTI 270
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H H K G +V V+ L+ YA I ++F+ + R+ +WN +I Y
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
+ AL LF +ML V+ T+ T +L + L LE G VH KT Y
Sbjct: 331 ER-----ALSLFSNMLR--YQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIY--G 381
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV +G AL+DMY+KCG + +A +F + ++ ++W A+ G ++HG G EAI++ + M
Sbjct: 382 QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLM 441
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371
++ KP+ +TF + +AC + G ++EG F +MK +G+EP ++HY+C+V L+GR+G+
Sbjct: 442 KETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGN 501
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L++A FI IP +P ++WR+LL AC +H DV LG + +L+L+P
Sbjct: 502 LDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPR--------DEA 553
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
V LSNIYA A RW +V VRK MK K V+ EPG S ++
Sbjct: 554 SHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIEN 594
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 9/203 (4%)
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
LGR +H V K G+ N + T LI Y+ + +S ++VFD++ + +W MI Y
Sbjct: 64 LGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYA 123
Query: 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
DC AL F M V+G KP + T VL L + G VH + KT
Sbjct: 124 EN-----DCFSEALEFFSQM--RVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKT 176
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
Y E D+++G L+++Y++CG D+A F M + +V+ W+ M + A G+ +A+
Sbjct: 177 NY--ERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALE 234
Query: 307 LLDSMRDCGVKPNAVTFTSLFAA 329
+ MR V PN TF+S+ A
Sbjct: 235 IFCQMRRAFVIPNQFTFSSVLQA 257
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 127/283 (44%), Gaps = 32/283 (11%)
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
VFD+MP R++ ++ +I+GY +K A LF + + + P T V L
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNK-----FIEAFELFARLHGEGHELNPFVFTTVLKLL 56
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
VS + E G VHG + K Y ++ FIGTAL+D YS GC+ A +F + K++
Sbjct: 57 VSMEWA--ELGRIVHGCVLKVGY--GSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDM 112
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
++WT M A + +EA+ MR G KPN TF + AC GL FD
Sbjct: 113 VSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACL-------GLQNFDA 165
Query: 346 MKS------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
K+ K E + +++L R G ++A+ +P K D I W ++S
Sbjct: 166 GKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMP-KNDVIPWSFMISRFA 224
Query: 400 VHGDVALGEKVGKILLQLQ------PEVTFVDVACTSEDFVAL 436
G EK +I Q++ + TF V S D +L
Sbjct: 225 QSGQ---SEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESL 264
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 208/379 (54%), Gaps = 30/379 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT+ L SC R S L LG+QIH + K + ++ V ++L+ YA I +
Sbjct: 152 NEFTFATVLTSCIR---ASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAR 208
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
++F+ +P R + A+I GY + AL +F + + G+ P T +L
Sbjct: 209 EIFECLPERDVVSCTAIIAGYAQLGLDEE-----ALEMFHRLHSE--GMSPNYVTYASLL 261
Query: 225 SVSSQLGLLEFGACVHGYM---EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+ S L LL+ G H ++ E FY + +L+DMYSKCG L A +F M
Sbjct: 262 TALSGLALLDHGKQAHCHVLRRELPFY-----AVLQNSLIDMYSKCGNLSYARRLFDNMP 316
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGL 340
E+ ++W AM G + HG G E + L MRD VKP+AVT ++ + C H + + GL
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376
Query: 341 HLFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
++FD M ++G +P +HY CIVD+LGRAG ++EA+ FI +P KP A + SLL AC
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 436
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
VH V +GE VG+ L++++PE + ++V LSN+YASA RW DV +VR M K
Sbjct: 437 VHLSVDIGESVGRRLIEIEPE--------NAGNYVILSNLYASAGRWADVNNVRAMMMQK 488
Query: 460 RVETEPGSSILQ--TTTHY 476
V EPG S +Q T HY
Sbjct: 489 AVTKEPGRSWIQHEQTLHY 507
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 149/297 (50%), Gaps = 22/297 (7%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H H+ K ++ + T L+ FY + +KV D+MP ++ +W AMI+ Y S
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY-S 129
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
Q+ + + AL +F +M+ S KP + T VL+ + L G +HG + K
Sbjct: 130 QTGHSSE----ALTVFAEMM--RSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWN 183
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y ++ +F+G++L+DMY+K G + A IF + E++V++ TA+ G A G EA+ +
Sbjct: 184 Y--DSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEM 241
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG----LHLFDNMKSKWGVEPHIKHYSCIV 363
+ G+ PN VT+ SL A L++ G H+ + V + ++
Sbjct: 242 FHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ-----NSLI 296
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
D+ + G+L A +P + AI W ++L + HG LG +V ++ ++ E
Sbjct: 297 DMYSKCGNLSYARRLFDNMPERT-AISWNAMLVGYSKHG---LGREVLELFRLMRDE 349
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L G VH +M KT Y+P ++ T L+ Y KC CL++A + M EKNV++WTAM
Sbjct: 68 LRDGQRVHAHMIKTRYLPA--TYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMI 125
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
+ + G +EA+ + M KPN TF ++ +C A + G + + KW
Sbjct: 126 SRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIH-GLIVKWNY 184
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383
+ HI S ++D+ +AG ++EA +P
Sbjct: 185 DSHIFVGSSLLDMYAKAGQIKEAREIFECLP 215
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 154/497 (30%), Positives = 251/497 (50%), Gaps = 69/497 (13%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70
L L+A+ S +KQIH Q I L S L LI++Y ++ H VF
Sbjct: 70 LYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGL----VRLAHQVFEKMP 125
Query: 71 PPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P++ FN +I + +++ +F V GL D+FT + L SC + L +
Sbjct: 126 SPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEP-DEFTILGLLVSCGQ---LGNVK 181
Query: 127 LGRQIHVHVTKRG--FMFNVLVATTLIHFYA---------------SNKDISS------- 162
G+ +H + +R N+++ L+ Y KDI S
Sbjct: 182 FGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAG 241
Query: 163 ---------GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VS 211
+ F QMP R +WN+++ GY + A ++++VD +
Sbjct: 242 CAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFAS---------VKELIVDMVME 292
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
V P TM+ ++S +++ G L+ G HG++ + + D F+G+AL+DMY KCG ++
Sbjct: 293 KVIPDTVTMISLVSAATESGALDQGRWAHGWVIRM--QIKLDAFLGSALIDMYCKCGSIE 350
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F + +K+V WT M TG+A HG G++A+ L M++ V P+ VTF S+ +AC
Sbjct: 351 RASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQE-DVSPDDVTFVSVLSACS 409
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
H+GLV++G+ +F +M + +G+EP ++HY C+VDLL R+G L EA + I +P+KP +W
Sbjct: 410 HSGLVDQGIKVFSSM-TDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIW 468
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
++L+AC GDV L E + LL L PE + LSNIYA++ RW +
Sbjct: 469 GAMLNACQAQGDVELAEIASRELLNLDPE--------EEGGYTLLSNIYAASGRWSYSKK 520
Query: 452 VRKQMKVKRVETEPGSS 468
+R+ M+ + V+ G S
Sbjct: 521 IRETMESRGVKKTAGCS 537
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 184/426 (43%), Gaps = 70/426 (16%)
Query: 48 LYCTKKASPQSTKIVHFVFTHFDP-PNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDD 106
+Y + + P + + +F HF P PNLF++NTLI A+ K + +F
Sbjct: 5 IYFSAVSHPDNLDLAITLFNHFTPNPNLFIYNTLIS-----------AFSSLKKIESFYL 53
Query: 107 FTYVFALGSCARFCSLSTLWLG-------RQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159
+ + + G C +L L +QIH G + TLI Y N
Sbjct: 54 YNVLLSSGECPDKQTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGL 113
Query: 160 ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219
+ +VF++MP ++N MI GY K A+ LF +M+ G++P + T
Sbjct: 114 VRLAHQVFEKMPSPDIVSFNVMIVGYAK-----KGFGLEAMRLFHEMVG--LGLEPDEFT 166
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC------------ 267
++ +L QLG ++FG VHG+ME+ +++ +G AL+DMY KC
Sbjct: 167 ILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGA 226
Query: 268 --------------GC-----LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
GC L+ A L F +M +++++W ++ TG A G L+
Sbjct: 227 LKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELI 286
Query: 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK----HYSCIVD 364
M V P+ VT SL +A +G +++G W + IK S ++D
Sbjct: 287 VDMVMEKVIPDTVTMISLVSAATESGALDQG-----RWAHGWVIRMQIKLDAFLGSALID 341
Query: 365 LLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
+ + G +E A I K D +W ++++ HG G K ++ ++Q +V+
Sbjct: 342 MYCKCGSIERASRVFKEIN-KKDVTVWTTMITGLAFHG---YGSKALELFSEMQEDVSPD 397
Query: 425 DVACTS 430
DV S
Sbjct: 398 DVTFVS 403
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 199/364 (54%), Gaps = 20/364 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F L L GR IH V K G + +L YA +++ K +FD+M + W
Sbjct: 232 FTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILW 291
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI+GY A A+ +F +M+ V+P ++ +S +Q+G LE
Sbjct: 292 NAMISGYAKNGY-----AREAIDMFHEMIN--KDVRPDTISITSAISACAQVGSLEQARS 344
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
++ Y+ ++ Y +DVFI +AL+DM++KCG ++ A L+F R +++V+ W+AM G +H
Sbjct: 345 MYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ EAI L +M GV PN VTF L AC H+G+V EG F N+ + + P +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF-NLMADHKINPQQQH 461
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y+C++DLLGRAGHL++AY I +P++P +W +LLSAC H V LGE + L +
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
P T +V LSN+YA+A W V VR +MK K + + G S ++ L
Sbjct: 522 PSNT--------GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR--L 571
Query: 479 DGFR 482
+ FR
Sbjct: 572 EAFR 575
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 195/396 (49%), Gaps = 28/396 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ + T + +KQIHA+L+ L+ S L +LI +S VF P
Sbjct: 28 IDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH----ASSSFGDITFARQVFDDLPRPQ 83
Query: 74 LFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+F +N +IR QD++L+++ + ++ D FT+ L +C+ LS L +GR
Sbjct: 84 IFPWNAIIRGYSRNNHFQDALLMYSN-MQLARVSPDSFTFPHLLKACS---GLSHLQMGR 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNAMINGYCS 187
+H V + GF +V V LI YA + + S + VF+ +P+ R+ +W A+++ Y
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ AL +F M VKP +V VL+ + L L+ G +H + K
Sbjct: 200 NGE-----PMEALEIFSHM--RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
E D+ I +L MY+KCG + A ++F +M+ N++ W AM +G A +G EAI +
Sbjct: 253 LEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLL 366
M + V+P+ ++ TS +AC G +E+ +++ + +S + + I S ++D+
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMF 368
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G +E A + + D ++W +++ +HG
Sbjct: 369 AKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 39/358 (10%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q+H K GF F+V V T L++ YA+ K+VFD+MP+R+S TWN I G
Sbjct: 109 GLQLHALTLKLGFEFHVYVHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGLAK 168
Query: 188 QSK--------------------------KAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+ + AL LF M +D G+KPT+ T++
Sbjct: 169 WGELHLARSLLDEMPMPTVVSWTTIIDGYTRMNQPKQALALFLTMFLD-EGIKPTEITLL 227
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM- 280
+ S LG LE +H Y EK+ + +D+ I T+L+D Y+KCGC+++A +F +
Sbjct: 228 AIFPAISNLGALEICQLIHTYGEKSG-LNASDIRIRTSLLDTYAKCGCIESASRVFGEID 286
Query: 281 -REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ +N+++WT++ + A+HG EA+ + M+ +KPN +TF S+ AC H GLVEEG
Sbjct: 287 AKSRNLVSWTSIISAFAMHGMAKEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEG 346
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLLSAC 398
L F M +K+ + P +KHY C++D+LGRAG L+EA + IP + ++WR+LL AC
Sbjct: 347 LKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPNYVVNVVIWRTLLGAC 406
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
+ HG+V +G +V + +L+++ + D+V LSNI+A R+ DVE VR+ M
Sbjct: 407 SFHGNVEMGARVTRKILEMEKKY--------GGDYVLLSNIFAGVGRFWDVERVRRLM 456
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/385 (33%), Positives = 204/385 (52%), Gaps = 42/385 (10%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A L L +G++ H +V + GF +V V T+LI Y N ++S + VFD M R+
Sbjct: 633 ASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIF 692
Query: 177 TWNAMINGYC------------SQSKKAK------------------DCAFNALVLFRDM 206
WN++++GY +Q +K C AL F M
Sbjct: 693 AWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQM 752
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
GV P ++ C+L + L LL+ G +H + ++ DVF+ TAL+DMYSK
Sbjct: 753 --QQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFI--EDVFVATALIDMYSK 808
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
L NA +F R++ K + +W M G AI G G EAI + + M+ GV P+A+TFT+L
Sbjct: 809 SSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTAL 868
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
+AC ++GL+ EG FD+M + + + P ++HY C+VDLLGRAG+L+EA++ I +P+KP
Sbjct: 869 LSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKP 928
Query: 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446
DA +W +LL +C +H ++ E K L +L+P S +++ + N+Y+ RW
Sbjct: 929 DATIWGALLGSCRIHKNLKFAETAAKNLFKLEPN--------NSANYILMMNLYSIFNRW 980
Query: 447 PDVESVRKQMKVKRVETEPGSSILQ 471
D++ +R+ M V S +Q
Sbjct: 981 EDMDHLRELMGAAGVRNRQVWSWIQ 1005
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/348 (30%), Positives = 165/348 (47%), Gaps = 26/348 (7%)
Query: 24 IKQIHAQLITNALKSPPLYA--QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
IK +HAQ+I K P A LI Y S +V +V P N +N+ +
Sbjct: 439 IKMMHAQMIKLPQKWNPDAAAKNLISSYLGF-GDFWSAAMVFYVGL---PRNYLKWNSFV 494
Query: 82 RCTPPQDSVL-----VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
L VF KG++ FD Y AL +C R + +WLG +IH +
Sbjct: 495 EEFKSSAGSLHIVLEVFKELHGKGVV-FDSEVYSVALKTCTR---VMDIWLGMEIHGCLI 550
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
KRGF +V + L++FY + +VF +MP + WN I K K
Sbjct: 551 KRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQK--- 607
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVS-SQLGLLEFGACVHGYMEKTFYMPENDVF 255
+ LFR M S +K T+V VL S S+LG L G HGY+ + + + DV+
Sbjct: 608 --GVELFRKM--QFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGF--DCDVY 661
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+GT+L+DMY K L +A +F M+ +N+ W ++ +G + G +A+RLL+ M G
Sbjct: 662 VGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEG 721
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
+KP+ VT+ + + G +E L F M+ + GV P+ +C++
Sbjct: 722 IKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQE-GVMPNSASITCLL 768
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 125/278 (44%), Gaps = 21/278 (7%)
Query: 29 AQLITNALKSPPLYA--QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTP- 85
AQ + + +K+ ++A L+ Y K + ++++ + P+L +N +I
Sbjct: 679 AQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAM 738
Query: 86 ---PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
++++ FA +G++ + + L +CA SLS L G++IH + GF+
Sbjct: 739 WGCGKEALAFFAQMQQEGVMP-NSASITCLLRACA---SLSLLQKGKEIHCLSIRNGFIE 794
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V VAT LI Y+ + + + KVF ++ ++ A+WN MI G+ A+ +
Sbjct: 795 DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFA-----IFGLGKEAISV 849
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALV 261
F +M GV P T +LS GL+ G M + + P + + +V
Sbjct: 850 FNEM--QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHY--CCMV 905
Query: 262 DMYSKCGCLDNAL-LIFSRMREKNVLTWTAMATGMAIH 298
D+ + G LD A LI + + + W A+ IH
Sbjct: 906 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIH 943
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 21/370 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ D T L CA+ + + G+ IH++V K G F + V+ LI+ YA +
Sbjct: 91 VKMDAITVASVLPVCAQVGDILS---GKLIHLYVIKHGLEFELFVSNALINMYAKFGSLG 147
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+KVF + ++ +WN +I GY ++ A +L + + P T V
Sbjct: 148 HAQKVFGLL-IKDVVSWNTLITGYAQNGLASE--AIEVYLLMEEH----EEIIPNQGTWV 200
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+L S +G L+ G +HG + K +DVF+GT L+DMY KCG LD+A+ +F ++
Sbjct: 201 SILPAYSHVGALQQGMRIHGQVIKNCLY--SDVFVGTCLIDMYGKCGKLDDAISLFYQVP 258
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
KN + W AM + +HG G +A+ L M+ VKP+ +TF SL +AC H+GLV +
Sbjct: 259 RKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQW 318
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F+ M+ ++G++P +KHY C+VDL GRAG LE A+NFI +PI+PDA W +LL+AC +H
Sbjct: 319 CFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIH 378
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G++ LG+ + L ++ E +V LSNIYA+ +W V+ VR + + +
Sbjct: 379 GNIELGKHASERLFEVDSENVGY--------YVLLSNIYANVGKWEGVDDVRSLARDRGL 430
Query: 462 ETEPG-SSIL 470
PG SSI+
Sbjct: 431 RKNPGWSSII 440
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 175/317 (55%), Gaps = 24/317 (7%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G++IH V K GF ++V VA +L+H Y+ + +K+FD MP R +WNAMI+GYC
Sbjct: 13 GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
A+ AL + +M ++ GVK T+ VL V +Q+G + G +H Y+ K
Sbjct: 73 NGNAAE-----ALDIADEMRLE--GVKMDAITVASVLPVCAQVGDILSGKLIHLYVIK-- 123
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ E ++F+ AL++MY+K G L +A +F + K+V++W + TG A +G +EAI +
Sbjct: 124 HGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEV 182
Query: 308 LDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
M + + PN T+ S+ A H G +++G+ + + K + + +C++D+
Sbjct: 183 YLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQV-IKNCLYSDVFVGTCLIDMY 241
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE------ 420
G+ G L++A + +P + +++ W +++S VHGD GEK ++ +++ E
Sbjct: 242 GKCGKLDDAISLFYQVP-RKNSVPWNAMISCYGVHGD---GEKALELFREMKAERVKPDH 297
Query: 421 VTFVDV--ACTSEDFVA 435
+TFV + AC+ V+
Sbjct: 298 ITFVSLLSACSHSGLVS 314
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 160/495 (32%), Positives = 239/495 (48%), Gaps = 57/495 (11%)
Query: 16 KAITTPSHIKQIHAQLITNALKSPPLYAQLI-------QLYCTKKASPQSTKIVHFVFTH 68
+ T H++Q HA+L L + + L+ +AS S + +F H
Sbjct: 33 RRAATGRHVQQAHARLAVLGLATASVLPHLLAALPRLPHPPPPDEASSSSYPLS--LFRH 90
Query: 69 FDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLS----T 124
+ F N L+R P + +F + L +F F L S + + +
Sbjct: 91 SASASAFASNHLLRVLPHPLPLRLFPNLPRRNLHSF-----TFLLASISNHLDATDHRAS 145
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP-MRSSATWNAMIN 183
+LG +H K G ++ V L HFY D+ + + VFD++P +R TWNA++
Sbjct: 146 SFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLA 205
Query: 184 GYCSQSK-KAKDCAFN-------------------------ALVLFRDMLVDVSGVKPTD 217
GY +A F AL +FRDM+ GV+ +
Sbjct: 206 GYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVE--KGVRVNE 263
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
+V LS ++Q+GLLE G VH +++T MP + V +G ALVDM+SKCGC+ A +F
Sbjct: 264 AAVVTALSAAAQMGLLEHGRFVHEVVQRTG-MPVS-VNVGAALVDMFSKCGCVAVAREVF 321
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
M ++V W AM G+A HG G +A+ L D G+ P +TF + AC GLV
Sbjct: 322 DGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVA 381
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
EG F M K+ +EP ++HY C+VDLLGRAG + EA I G+ I PD +LW ++LSA
Sbjct: 382 EGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSA 441
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C H V LG VG L++L+P +V L++IYA A++W +V VRK M
Sbjct: 442 CKTHNLVDLGITVGNKLIELEP--------AHDGHYVLLASIYAKAKKWDEVREVRKLMS 493
Query: 458 VKRVETEPGSSILQT 472
+ G S+++
Sbjct: 494 SRGTGKSAGWSLMEA 508
>gi|253761503|ref|XP_002489130.1| hypothetical protein SORBIDRAFT_0019s004710 [Sorghum bicolor]
gi|241947229|gb|EES20374.1| hypothetical protein SORBIDRAFT_0019s004710 [Sorghum bicolor]
Length = 489
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 155/479 (32%), Positives = 240/479 (50%), Gaps = 38/479 (7%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYA--QLIQLYCTKKASPQST 59
LSL RC TPS + ++HA +I + + +A +L+ Y P +
Sbjct: 21 LSLLADRC---------ATPSALARVHAAMIVSGRLAEDAFAASRLLTAYAALSPDPAAA 71
Query: 60 KIVHFVFTHFDPPNLFLFNTLIR---CTP-PQDSVLVFAYWVSKGLLTFDDFTYVFALGS 115
+ P N F+ NT +R +P P + F+ G L T+ F L +
Sbjct: 72 ALALLSSLPCAP-NSFMLNTTLRVLASSPDPAAAFPFFSRLRVTGALAPGRHTFPFLLKA 130
Query: 116 CARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
AR L + Q+H + G + + VA L+ Y+ + + ++VFD++P R+
Sbjct: 131 AARLPL--PLPVTEQLHALAVRHGVLLDAYVANGLVRGYSVAGRLQAARRVFDELPERNP 188
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV--SSQLGLL 233
A + M++ Y +Q+ + +D A+ F D +V V G +P T+ VLS S G L
Sbjct: 189 AVYTTMVSAY-AQNGRHED----AMAAF-DEMVRV-GFEPCGATLASVLSACARSASGGL 241
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL-TWTAMA 292
E G VH M T + +GTAL+DMY K G + A + + E++V W A+
Sbjct: 242 EMGCHVHDLM--TAWGVPVSTILGTALIDMYVKNGAIKEAFAVLDGLPERHVTGAWNALI 299
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
+G+A HG A+ L M+ GV PNA T +AC H GL++E LF +M+ +G+
Sbjct: 300 SGLAHHGHRERALNLFRQMQQEGVPPNATTLVGALSACSHPGLLDEARRLFSSMEKDFGI 359
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
P I+HY C+VDLLGRAG L EA + I G+ + D ++W +LL+AC H + + E+
Sbjct: 360 TPAIQHYGCMVDLLGRAGLLSEAEDLIRGMSCEADTVIWGALLTACKNHSGIEIAERAAV 419
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L+L P V +V LSN+YA A RW DV+ +RK+MK R+ PG+S +
Sbjct: 420 EMLKLDPSNHGV--------YVVLSNLYAEAGRWQDVDKLRKEMKGARLSKIPGASTVN 470
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/363 (35%), Positives = 206/363 (56%), Gaps = 21/363 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++FT AL C C + +L LG Q++ K G+ N+ V +L++ Y + I
Sbjct: 268 NEFTLTSALSQC---CEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAH 324
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKD----C--AFNALVLFRDMLVDVSGVKPTDT 218
++F++M S TWNAMI G+ + KD C AL LF + ++SG+KP
Sbjct: 325 RLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKL--NLSGMKPDLF 382
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+ VLSV S++ +E G +H KT ++ +DV + T+L+ MYSKCG ++ A F
Sbjct: 383 TLSSVLSVCSRMLAIEQGEQIHAQTIKTGFL--SDVIVSTSLISMYSKCGSIERASKAFL 440
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M + ++ WT+M TG + HG +A+ + + M GV+PNAVTF + +AC HAG+V +
Sbjct: 441 EMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQ 500
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
L+ F+ M+ K+ ++P + HY C+VD+ R G LE+A NFI + +P +W + ++ C
Sbjct: 501 ALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGC 560
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
HG++ LG + LL L+P+ E +V L N+Y SAER+ DV VRK M+
Sbjct: 561 KSHGNLELGFYAAEQLLSLKPK--------DPETYVLLLNMYLSAERFEDVSRVRKMMEE 612
Query: 459 KRV 461
++V
Sbjct: 613 EKV 615
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 141/267 (52%), Gaps = 11/267 (4%)
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
+H HV K G N V + L++ YA ++ ++VFD M R+ W ++ G+ S+
Sbjct: 89 VHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQ 148
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250
+A+ +F++ML +G P+ T+ VL S L L+ G H Y+ K Y
Sbjct: 149 PK-----HAIHVFQEMLY--AGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIK--YHV 199
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
+ D +G+AL +YSKCG L++AL FSR+REKNV++WT+ + A +G + +RL
Sbjct: 200 DFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVE 259
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M +KPN T TS + CC +E G ++ ++ K+G E +++ + ++ L ++G
Sbjct: 260 MIAVDIKPNEFTLTSALSQCCEILSLELGTQVY-SLCIKFGYESNLRVRNSLLYLYLKSG 318
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ EA+ + + W ++++
Sbjct: 319 CIVEAHRLFNRMD-DASMVTWNAMIAG 344
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 188/417 (45%), Gaps = 47/417 (11%)
Query: 65 VFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF + N+ + TL ++ + P+ ++ VF + +L + V+ L + C
Sbjct: 124 VFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVF-----QEMLYAGSYPSVYTLSAVLHAC 178
Query: 121 S-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
S L +L LG Q H ++ K F+ V + L Y+ + K F ++ ++ +W
Sbjct: 179 SSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWT 238
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDML-VDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
+ ++ K L LF +M+ VD +KP + T+ LS ++ LE G
Sbjct: 239 SAVSACADNGAPVK-----GLRLFVEMIAVD---IKPNEFTLTSALSQCCEILSLELGTQ 290
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG---- 294
V+ K Y E+++ + +L+ +Y K GC+ A +F+RM + +++TW AM G
Sbjct: 291 VYSLCIKFGY--ESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQM 348
Query: 295 -------MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
++ +G+EA++L + G+KP+ T +S+ + C +E+G +
Sbjct: 349 MELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQ-T 407
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVA 405
K G + + ++ + + G +E A + + + I W S+++ + HG A
Sbjct: 408 IKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRT-MIAWTSMITGFSQHGMSQQA 466
Query: 406 LGEKVGKILLQLQPE-VTFVDV--ACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
L L ++P VTFV V AC+ V+ + Y E ++K+ K+K
Sbjct: 467 LHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNY--------FEIMQKKYKIK 515
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/353 (36%), Positives = 202/353 (57%), Gaps = 22/353 (6%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ + + L R++ + +R NV+ T+++ Y N D+ + K +FD MP ++ TW
Sbjct: 232 YVKMGCVGLARELFNEMRER----NVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTW 287
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI GYC Q++++ D AL LFR+M + V+P + T+VCVL + LG L+ G
Sbjct: 288 NAMIGGYC-QNRRSHD----ALELFREM--QTASVEPNEVTVVCVLPAVADLGALDLGRW 340
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H + + + IGTAL+DMY+KCG + A L F M E+ +W A+ G A++
Sbjct: 341 IHRFALRK--KLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVN 398
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EA+ + M + G PN VT + +AC H GLVEEG F+ M+ ++G+ P ++H
Sbjct: 399 GCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAME-RFGIAPQVEH 457
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y C+VDLLGRAG L+EA N I +P + I+ S L AC DV E+V K ++++
Sbjct: 458 YGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMD 517
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+V + ++V L N+YA+ +RW DVE V++ MK + E S+++
Sbjct: 518 EDV--------AGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIE 562
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 150/344 (43%), Gaps = 46/344 (13%)
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
HF F P LF L R PP T D +T+ + CA +
Sbjct: 98 HFAARQFSQP-FTLFRDLRRQAPP---------------FTPDGYTFTALVKGCATRVAT 141
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
G +H V K G F++ VAT L+ Y + S +KVFD+M +RS +W A+I
Sbjct: 142 GE---GTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVI 198
Query: 183 NGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
GY C +A+ LF +M D +V ++ G ++ G CV
Sbjct: 199 VGYARCGDMSEARR-------LFDEM---------EDRDIVAFNAMID--GYVKMG-CVG 239
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
E M E +V T++V Y G ++NA L+F M EKNV TW AM G + +
Sbjct: 240 LARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRR 299
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEPHIKH 358
++A+ L M+ V+PN VT + A G ++ G +H F ++ K I
Sbjct: 300 SHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRF-ALRKKLDRSARIG- 357
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ ++D+ + G + +A G+ + A W +L++ V+G
Sbjct: 358 -TALIDMYAKCGEITKAKLAFEGMTERETAS-WNALINGFAVNG 399
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 19/228 (8%)
Query: 130 QIHVHVTKRGFM--FNVLVA--TTLIHFYASNKD----ISSGKKVFDQMPMRSSATWNAM 181
QIH + + N+L A TT AS K I+ ++ F+ R + N+M
Sbjct: 35 QIHAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAIINHARRFFNATHTRDTFLCNSM 94
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241
I + + + ++ LFRD+ P T ++ + G +HG
Sbjct: 95 IAAHFAARQFSQ-----PFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGTLLHG 149
Query: 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKG 301
+ K D+++ TALVDMY K G L +A +F M ++ ++WTA+ G A G
Sbjct: 150 MVLKNGVCF--DLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDM 207
Query: 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+EA RL D M D + V F ++ G V LF+ M+ +
Sbjct: 208 SEARRLFDEMED----RDIVAFNAMIDGYVKMGCVGLARELFNEMRER 251
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/367 (35%), Positives = 210/367 (57%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ FT+ L +CA +L+ L +G Q+ H K GF VA +LI YA + I +
Sbjct: 375 NHFTFSSTLKACA---NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K FD + ++ ++N +I+ Y + AL LF + ++ G+ + T +L
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEE-----ALELFNE--IEDQGMGASAFTFASLL 484
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++ +G + G +H + K+ V AL+ MYS+CG +++A +F M ++N
Sbjct: 485 SGAASIGTIGKGEQIHARVIKSGLKLNQSVC--NALISMYSRCGNIESAFQVFEDMEDRN 542
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++WT++ TG A HG +A+ L M + GV+PN VT+ ++ +AC H GLV EG F
Sbjct: 543 VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFK 602
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M ++ GV P ++HY+CIVD+LGR+G L EA FI +P K DA++WR+ L AC VHG++
Sbjct: 603 SMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNL 662
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG+ K++++ +P D A ++ LSN+YAS +W +V ++RK MK K + E
Sbjct: 663 ELGKHAAKMIIEQEPH----DPAA----YILLSNLYASISKWDEVSNIRKAMKEKXLIKE 714
Query: 465 PGSSILQ 471
G S ++
Sbjct: 715 AGCSWVE 721
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 57/380 (15%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L C R S +G +H +T+ + + +LI Y+ +F
Sbjct: 68 TYSLFLKKCIRTRSFD---IGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124
Query: 168 DQM-PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
M R +W+AM++ + + + F AL+ F DM+ + G P +
Sbjct: 125 RLMGSSRDLISWSAMVSCFANN-----NMGFRALLTFVDMIEN--GYYPNEYCFAAATRA 177
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC-GCLDNALLIFSRMREKNV 285
S + G + G++ KT Y+ ++DV +G L+DM+ K G L +A +F +M E+N
Sbjct: 178 CSTAEFVSVGDSIFGFVIKTGYL-QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----------HAG 334
+TWT M T + G EAI L M G +P+ T + + +AC H+
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296
Query: 335 LVEEGLHL-------FDNMKSKWGVEPHI----KHYSCIVD------------LLGRAGH 371
+ GL L NM +K V+ + K + I+D + + G+
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356
Query: 372 LEEAYNFIMGIPIK---PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
EEA + G+ + P+ + S L AC + +GE+V ++L F V C
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL----GFSSVNC 412
Query: 429 TSEDFVALSNIYASAERWPD 448
+ +++ YA + R D
Sbjct: 413 VANSLISM---YARSGRIDD 429
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 156/501 (31%), Positives = 251/501 (50%), Gaps = 61/501 (12%)
Query: 8 RCFALLKLKAITTPSHI---KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVH 63
R + LK ++ H+ KQIH Q+I +S L L+ +Y + K
Sbjct: 139 RVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK--- 195
Query: 64 FVFTHFDPPNLFLFNTL----IRCTPPQDSVLVF-------AYWVS--KGL--------- 101
VF D N ++N+L + C +D++ +F W + KGL
Sbjct: 196 -VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEA 254
Query: 102 -----------LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL 150
L D + + L +C +++ G+QIH + + F ++ V + L
Sbjct: 255 IECFREMKVQGLKMDQYPFGSVLPACGGLGAINE---GKQIHACIIRTNFQDHIYVGSAL 311
Query: 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
I Y K + K VFD+M ++ +W AM+ GY Q+ +A++ A+ +F DM
Sbjct: 312 IDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGY-GQTGRAEE----AVKIFLDM--QR 364
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
SG+ P T+ +S + + LE G+ HG + + + V + +LV +Y KCG +
Sbjct: 365 SGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLI--HYVTVSNSLVTLYGKCGDI 422
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
D++ +F+ M ++ ++WTAM + A G+ E I+L D M G+KP+ VT T + +AC
Sbjct: 423 DDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC 482
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
AGLVE+G F M S++G+ P I HYSC++DL R+G LEEA FI G+P PDAI
Sbjct: 483 SRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIG 542
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W +LLSAC G++ +G+ + L++L P + LS+IYAS +W V
Sbjct: 543 WTTLLSACRNKGNLEIGKWAAESLIELDPH--------HPAGYTLLSSIYASKGKWDSVA 594
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+R+ M+ K V+ EPG S ++
Sbjct: 595 QLRRGMREKNVKKEPGQSWIK 615
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 45/333 (13%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-SQSKKAKDCAFNALV 201
N+ L+ Y+ IS + F+++P R TWN +I GY S A A+N ++
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
RD ++ T T++ +L +SS G + G +HG + K + E+ + +G+ L+
Sbjct: 131 --RDFSANL-----TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGF--ESYLLVGSPLL 181
Query: 262 DMYSKCGCLDNALLIFS------------------------------RMREKNVLTWTAM 291
MY+ GC+ +A +F R EK+ ++W AM
Sbjct: 182 YMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAM 241
Query: 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351
G+A +G EAI M+ G+K + F S+ AC G + EG + + +
Sbjct: 242 IKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACI-IRTN 300
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ HI S ++D+ + L A + K + + W +++ +G E+
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVG---YGQTGRAEEAV 356
Query: 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
KI L +Q D + A +N+ + E
Sbjct: 357 KIFLDMQRSGIDPDHYTLGQAISACANVSSLEE 389
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 70/158 (44%), Gaps = 4/158 (2%)
Query: 242 YMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y + F +P+ ++F L+ YSK G + F ++ +++ +TW + G ++ G
Sbjct: 59 YARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGL 118
Query: 301 GNEAIRLLDS-MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
A++ ++ MRD VT ++ G V G + + K G E ++
Sbjct: 119 VGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQV-IKLGFESYLLVG 177
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
S ++ + G + +A G+ + + +++ SL+
Sbjct: 178 SPLLYMYANVGCISDAKKVFYGLDDR-NTVMYNSLMGG 214
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 164/515 (31%), Positives = 244/515 (47%), Gaps = 85/515 (16%)
Query: 23 HIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ QIHAQ+I + L S L QLI +K+ S VF H P NLF FN LI
Sbjct: 96 QLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLA----VFNHHKPKNLFTFNALI 151
Query: 82 RCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R +++ F + G+ D TY F L S A S LG IH + +
Sbjct: 152 RGLTTNSHFFNAIFHFRLMLRSGIKP-DRLTYPFVLKSMAGLFSTE---LGMAIHCMILR 207
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR-----SSATWNAMINGYCSQSK-- 190
G + V +L+ Y + + S KVFD+ P R S+ WN +I G C
Sbjct: 208 CGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMK 267
Query: 191 ----------KAKDCAFNALV--------------LFRDM----------LVD------- 209
K ++ +++ L+ LF M +VD
Sbjct: 268 KAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGD 327
Query: 210 ------------VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-FYMPENDVFI 256
GV+P T+V LS +++G LE G +H Y++ ++ E +
Sbjct: 328 SEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEA---L 384
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
GTALVDMY+KCG +++A +F +K++ TWT M G AIHG +AI M G+
Sbjct: 385 GTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGI 444
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
KP+ V F +L AC H+G V+ GL+ FD+M+ + +EP +KHY+ IVD+LGR+G L+EA
Sbjct: 445 KPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEAL 504
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
FI +P+ PD ++W +L AC H + + LL+L+P T +++ L
Sbjct: 505 RFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHT--------GNYIFL 556
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SN YA+ +W D E VR M+ + V G S ++
Sbjct: 557 SNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIE 591
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 193/344 (56%), Gaps = 17/344 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GRQ+H K F ++ +A+ LI Y+ + K++FD++ WN+M+ G
Sbjct: 438 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 497
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S + A F+ M G+ P+ + VLS ++L L G VH + +
Sbjct: 498 NSLDKE-----AFTFFKKM--REKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREG 550
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
YM ND F+G+AL+DMYSKCG +D A +F M KN +TW M G A +G G+EA+ L
Sbjct: 551 YM--NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLL 608
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M G KP+ +TF ++ AC H+GLV+ G+ +F++M+ + GVEP + HY+CI+D LG
Sbjct: 609 YEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLG 668
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L EA I +P K D I+W LLS+C V+ DV+L + + L L P+
Sbjct: 669 RAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQ------- 721
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V L+NIY+S RW D ++VR+ M +V +PG S ++
Sbjct: 722 -NSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 764
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 61/351 (17%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ IH H+ + + ++ LI FYA I + +++FDQMP R TWNA++ YC
Sbjct: 24 GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83
Query: 188 QSKKAKDCAFNALVLFRDM-----------------------------LVDVSGVKPTDT 218
S+ +A VLF +M + G PT
Sbjct: 84 ASELE-----DAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHF 138
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+ VLS L +E G HG K +N++++G AL+ MY+KC C+ +A+ F
Sbjct: 139 TLASVLSACGALVDVECGRRCHGISIKIGL--DNNIYVGNALLGMYAKCRCIGDAIQAFG 196
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
+ E N +++TAM G+A + NEA RL M + ++V+ +S+ C G E
Sbjct: 197 DVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEF 256
Query: 339 GLHLFDNMKS-------------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
GLH +++ S K G E + + ++D+ + G+++ A + +P +
Sbjct: 257 GLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP-E 315
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQ------PEVTFVD--VAC 428
+ W +++ +G + K + L ++Q E+T+V+ VAC
Sbjct: 316 VSVVSWNVMIAG---YGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVAC 363
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 44/301 (14%)
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
DI +G+++FD M S ++WN +++GY SQ++ K+ A+ LFR+M V P T
Sbjct: 368 DIEAGRQMFDGMSSPSLSSWNTILSGY-SQNENHKE----AVKLFREM--QFRSVHPDRT 420
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+ +LS + + LLE G VH +K + D+++ + L+ MYSKCG ++ A IF
Sbjct: 421 TLAIILSSLAGMMLLEGGRQVHAVSQKAVF--RTDIYLASGLIGMYSKCGKVEMAKRIFD 478
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
R+ E +++ W +M G++++ EA MR+ G+ P+ ++ ++ + C + +
Sbjct: 479 RIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQ 538
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA----------------------- 375
G + + ++ G S ++D+ + G ++ A
Sbjct: 539 GRQVHSQI-AREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYA 597
Query: 376 -----------YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
Y ++G KPD I + ++L+AC+ G V G K+ + Q V
Sbjct: 598 QNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLV 657
Query: 425 D 425
D
Sbjct: 658 D 658
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 146/320 (45%), Gaps = 31/320 (9%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKG 100
++ YC KAS + H +F N+ +NTLI R Q ++ V+ Y +S+
Sbjct: 77 ILGAYC--KASE--LEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVY-YRMSRE 131
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
FT L +C +L + GR+ H K G N+ V L+ YA + I
Sbjct: 132 GFVPTHFTLASVLSACG---ALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCI 188
Query: 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220
+ F +P + ++ AM+ G D A LFR ML + + ++
Sbjct: 189 GDAIQAFGDVPEPNEVSFTAMMGGLAD-----SDQVNEAFRLFRLMLRNR--IHVDSVSL 241
Query: 221 VCVLSVSSQLGLLEFG---------ACVHGYMEKTFYMP---ENDVFIGTALVDMYSKCG 268
VL V S+ G EFG + VHG + E+D+ + +L+DMY+K G
Sbjct: 242 SSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNG 301
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+D+A +IF M E +V++W M G + ++AI L M+ G +P+ +T+ ++
Sbjct: 302 NMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLV 361
Query: 329 ACCHAGLVEEGLHLFDNMKS 348
AC +G +E G +FD M S
Sbjct: 362 ACIKSGDIEAGRQMFDGMSS 381
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
F+Y L CA+ SLS GRQ+H + + G+M + V + LI Y+ D+ + + V
Sbjct: 521 FSYATVLSCCAKLSSLSQ---GRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 577
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD M +++ TWN MI+GY C A++L+ DM+ SG KP T V VL+
Sbjct: 578 FDMMLGKNTVTWNEMIHGYAQNG-----CGDEAVLLYEDMI--GSGEKPDGITFVAVLTA 630
Query: 227 SSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
S GL++ G + M++ + P D + T ++D + G L A ++ +M
Sbjct: 631 CSHSGLVDTGIKIFNSMQQEHGVEPLVDHY--TCIIDSLGRAGRLHEAEVLIDKM 683
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 254/470 (54%), Gaps = 36/470 (7%)
Query: 15 LKAITTPSHIK------QIHAQLITN-ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
L AI+ SH++ Q+HA +I N A+ + LI +Y + S KI F
Sbjct: 294 LSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKI----FD 349
Query: 68 HFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
+ ++ +NT+I D L+ Y + K L D T V AL S A L
Sbjct: 350 NMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVT-VTALLSAA--SDLRN 406
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM--PMRSSATWNAMI 182
+G+Q H ++ + G F + + LI YA + I + + VF++ R ATWN+M+
Sbjct: 407 PDIGKQTHGYLLRNGIQFEGM-DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMM 465
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+GY A ++ R ML V P T+ +L + G +++G +HG+
Sbjct: 466 SGYTQNG-----LVDQAFLILRQMLD--QKVMPNVVTLASILPACNPSGYIDWGKQLHGF 518
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ + +VF+ TAL+DMYSK G + +A +FS+ EK+++T++ M G HG G
Sbjct: 519 SIRNDL--DQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGE 576
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
A+ + M+ G++P+AVT ++ +AC +AGLV+EGL +F++M++ + ++P +H+ C+
Sbjct: 577 SALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCV 636
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
D+LGRAG +++AY F++G+ K + + +W SLL+AC +H LG+ V K LL+++
Sbjct: 637 ADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEK-- 694
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ + V LSNIYA W +V+ VRKQM+ + ++ E GSS ++
Sbjct: 695 ----INGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIE 740
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 174/406 (42%), Gaps = 43/406 (10%)
Query: 65 VFTHFDPPNLFLFNTLI---RCTPPQDSVLVFAYWV--SKGLLTFDDFTYVFALGSCARF 119
+F P+ L+NT+I C D L+F + S + D +TY L +CA
Sbjct: 26 LFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACA-- 83
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA------SNKDISSG-------KKV 166
L +G+ +H H + + +V +L++ Y+ + + SG +KV
Sbjct: 84 -DTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 142
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD M R+ WN +I Y + A+ A+ F M++ + G+KP+ + V V
Sbjct: 143 FDTMRKRTVVAWNTLIAWYVRTERYAE-----AVKQF-SMMMKI-GIKPSPVSFVNVFPA 195
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S LG + VHG + K ND+++ ++ + MY++ GCL+ A +F E+N
Sbjct: 196 FSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTE 255
Query: 287 TWTAMATGMAIHGKGNEAIRL-LDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLF 343
W M + + E I+L ++ + VT S +A H E E LH F
Sbjct: 256 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 315
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
K + + ++ + R ++ ++ +P K D + W +++SA +G
Sbjct: 316 ---VIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK-DVVSWNTMISAFVQNG- 370
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
L ++ + +++ + VD + A S++ R PD+
Sbjct: 371 --LNDEALMLFYEMKKQDLMVDSVTVTALLSAASDL-----RNPDI 409
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 20/185 (10%)
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+++FD +P S+ WN +I G + + AL+ + +M VK T
Sbjct: 23 ARQLFDALPRPSTVLWNTIIIGLVCNNFPDE-----ALLFYSNMKSSSPQVKCDSYTYSS 77
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL------------ 270
VL + L G VH + + P V+ +L++MYS C
Sbjct: 78 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVY--NSLLNMYSMCSSTTPDGKMVSGYSR 135
Query: 271 -DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
D +F MR++ V+ W + + EA++ M G+KP+ V+F ++F A
Sbjct: 136 CDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA 195
Query: 330 CCHAG 334
G
Sbjct: 196 FSSLG 200
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 139/418 (33%), Positives = 217/418 (51%), Gaps = 45/418 (10%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR--------------------FC 120
IRC D+ L+F + + T++ A C R F
Sbjct: 381 IRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFV 440
Query: 121 SLSTLWLG-------RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
++ + +G +++H + G + ++ V L+H YA + K+VFD M R
Sbjct: 441 NILSANVGEEALEWVKEVHSYAIDAG-LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVER 499
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ TW MI+G C A LF ML + G+ P TT V +LS + G L
Sbjct: 500 NVTTWTVMISGLAQHG-----CGHEAFSLFLQMLRE--GIVPDATTYVSILSACASTGAL 552
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
E+ VH + + +D+ +G ALV MY+KCG +D+A +F M E++V +WT M
Sbjct: 553 EWVKEVHSHAVNAGLV--SDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIG 610
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G+A HG+G +A+ L M+ G KPN +F ++ +AC HAGLV+EG F ++ +G+E
Sbjct: 611 GLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIE 670
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P ++HY+C+VDLLGRAG LEEA +FI+ +PI+P W +LL AC +G++ + E K
Sbjct: 671 PTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKE 730
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L+L+P+ ++ +V LSNIYA+ W VR M+ + + EPG S ++
Sbjct: 731 RLKLKPK--------SASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIE 780
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 167/353 (47%), Gaps = 23/353 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
++ TY+ L +C CS +L G++IH H+ + GF +V V T L++ Y I +
Sbjct: 29 NEITYLSILKAC---CSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQ 85
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD+M R+ +W MI G + + AF+ R + + G P T V +L
Sbjct: 86 LIFDKMVERNVISWTVMIGGLAHYGRGQE--AFH-----RFLQMQREGFIPNSYTYVSIL 138
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ ++ G LE+ VH + D+ +G ALV MY+K G +D+A ++F M E++
Sbjct: 139 NANASAGALEWVKEVHSHAVNAGLAL--DLRVGNALVHMYAKSGSIDDARVVFDGMVERD 196
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF--AACCHAGLVEEGLHL 342
+ +WT M G+A HG+G EA L M G PN T+ S+ +A G + E +
Sbjct: 197 IFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGAL-EWVKE 255
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
K G ++ + ++ + + G +++A G+ + D I W +++ +G
Sbjct: 256 VHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR-DVISWNAMIGGLAQNG 314
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
G + I L++Q E D S +++L N + S W V+ V K
Sbjct: 315 ---CGHEAFTIFLKMQQEGFVPD----STTYLSLLNTHVSTGAWEWVKEVHKH 360
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 152/332 (45%), Gaps = 52/332 (15%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY+ L + A + + W+ +++H H K GF+ ++ V LIH YA I + VF
Sbjct: 234 TYLSILNASAITSTGALEWV-KEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVF 292
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
D M R +WNAMI G C A +F M + G P TT + +L+
Sbjct: 293 DGMCDRDVISWNAMIGGLAQNG-----CGHEAFTIFLKMQQE--GFVPDSTTYLSLLNTH 345
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
G E+ VH + + + +D+ +G+A V MY +CG +D+A LIF ++ +NV T
Sbjct: 346 VSTGAWEWVKEVHKHAVEVGLV--SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTT 403
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-----------CHAGLV 336
W AM G+A G EA+ L MR G P+A TF ++ +A H+ +
Sbjct: 404 WNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI 463
Query: 337 EEGL-----------------------HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
+ GL +FD+M VE ++ ++ ++ L + G
Sbjct: 464 DAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-----VERNVTTWTVMISGLAQHGCGH 518
Query: 374 EAYNFIMGI---PIKPDAILWRSLLSACNVHG 402
EA++ + + I PDA + S+LSAC G
Sbjct: 519 EAFSLFLQMLREGIVPDATTYVSILSACASTG 550
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 124/238 (52%), Gaps = 14/238 (5%)
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GY A +A+ ++ M + G +P + T + +L L++G +H
Sbjct: 1 MIGGYAEYGY-----AEDAMKVYSQMRRE--GGQPNEITYLSILKACCSPVSLKWGKKIH 53
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
++ ++ + ++DV + TALV+MY KCG +D+A LIF +M E+NV++WT M G+A +G+
Sbjct: 54 AHIIQSGF--QSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGR 111
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EA M+ G PN+ T+ S+ A AG +E + + + G+ ++ +
Sbjct: 112 GQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGN 170
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+V + ++G +++A G+ ++ D W ++ HG G++ + LQ++
Sbjct: 171 ALVHMYAKSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGR---GQEAFSLFLQME 224
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 133/350 (38%), Positives = 210/350 (60%), Gaps = 21/350 (6%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
R+I ++ +R +V T+L++ YA N D+ S +K+FD+MP R+ +WNAMI GY
Sbjct: 307 AREIFNNMERR----DVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQ 362
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH-GYMEKT 246
S+ + AL LF +M VDV G+ PT+ T+VCVLS S QLG LE G +H ++ K
Sbjct: 363 NSQPME-----ALELFHNM-VDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKI 416
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306
+ + + A++DMY+KCG +D A +F M EKN+++W +M + A +G +A+
Sbjct: 417 GI--QVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALT 474
Query: 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366
L D M G+KP+ +TF + +AC + G V EG F++M++ +GVEP +HY+C+VDLL
Sbjct: 475 LFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLL 534
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDV 426
R G L+EAY I +P++ W +LL AC HG+V + + G+ LL+L PE + +
Sbjct: 535 SRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDSGI-- 592
Query: 427 ACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476
+ L+NI A ++W DV VR+ M+ + V+ PG S+++ +
Sbjct: 593 ------YSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKF 636
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 128/485 (26%), Positives = 215/485 (44%), Gaps = 55/485 (11%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
LL L++ ++ +KQI A + L + A + +C S H +F +
Sbjct: 56 LLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGD-IHYAHLIFDQTEL 114
Query: 72 PNLFLFNTLIR--CTPPQDSV-LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128
PN F +NT+I+ C S+ F + + FD ++VFAL +C +F + +G
Sbjct: 115 PNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQF---AEKIVG 171
Query: 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQ 188
+H + KRGF ++ V LI Y + +++FD+ ++ TW MINGY
Sbjct: 172 MAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARN 231
Query: 189 SKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248
+ + A+ LF ML S VKP + TM+ +LS SQ G E G +H ++ +
Sbjct: 232 NWLDE-----AIALFNSMLS--SDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDI 284
Query: 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308
++ A++DMY KCGCL A IF+ M ++V +WT++ G A +G A +L
Sbjct: 285 TCSLNLL--NAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLF 342
Query: 309 DSMRD--------------------------------CGVKPNAVTFTSLFAACCHAGLV 336
D M + G+ P T + +A G +
Sbjct: 343 DEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCL 402
Query: 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396
E G + N +K G++ + + ++D+ + G ++ A +P K + + W S++S
Sbjct: 403 EMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEK-NLVSWNSMIS 461
Query: 397 ACNVHGDV--ALGEKVGKILLQLQPE-VTFVDV--ACTSEDFVALSNI-YASAERWPDVE 450
A +G AL I L+P+ +TF+ V AC+ FV+ + S E VE
Sbjct: 462 AYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVE 521
Query: 451 SVRKQ 455
R+
Sbjct: 522 PKREH 526
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 223/441 (50%), Gaps = 50/441 (11%)
Query: 69 FDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
D P ++N +IR P +V + + VS D FT+ L +CAR +
Sbjct: 1 MDNPTTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEP-DGFTHSSLLSACARGGLVKE 59
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
G Q+H V +G+ NV V T+LI FYA + + VFD MP RS +WN+M+ G
Sbjct: 60 ---GEQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAG 116
Query: 185 Y--CSQSKKAK-------------------DCAFN-----ALVLFRDMLVDVSGVKPTDT 218
Y C+ A+ CA N AL+LF +M + V+
Sbjct: 117 YVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEM--RRACVELDQV 174
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALL 275
+V LS ++LG L+ G +H Y+++ F + V + AL+ MY+ CG L A
Sbjct: 175 ALVAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQ 234
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL-----DSMRDCGVKPNAVTFTSLFAAC 330
+F +M K+ ++WT+M A G G EA+ L D ++ GV+P+ +TF + AC
Sbjct: 235 VFVKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCAC 294
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
HAG V+EG +F +MK WG+ P I+HY C+VDLL RAG L+EA I +P+ P+ +
Sbjct: 295 SHAGFVDEGHQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAI 354
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W +LL C +H + L +V +L PE+ A V LSNIYA +RW DV
Sbjct: 355 WGALLGGCRIHRNSELASQVEN---KLVPELNGDQAAGY---LVLLSNIYAFGQRWQDVI 408
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+VR++M V+ PG S +Q
Sbjct: 409 TVRQKMIEMGVKKPPGRSWIQ 429
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 22/383 (5%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++++L F + + + T D LG+C +L GR +H V K GF ++ V
Sbjct: 189 EEALLAFKKMIDEEV-TIDQHVLCSTLGACG---ALKACKFGRSVHSSVVKLGFESDIFV 244
Query: 147 ATTLIHFYASNKDISSGKKVFD-QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
L Y+ D+ S VF R+ ++ +I+GY + K + V R
Sbjct: 245 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK--GLSVFVELRR 302
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
G++P + T ++ + LE G +H + K + + D F+ + LVDMY
Sbjct: 303 -----QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINF--DEDPFVSSILVDMYG 355
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG L+ A+ F + + + W ++ + HG G +AI++ + M D GVKPNA+TF S
Sbjct: 356 KCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFIS 415
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
L C HAGLVEEGL F +M +GV P +HYSC++DLLGRAG L+EA FI +P +
Sbjct: 416 LLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFE 475
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445
P+A W S L AC +HGD +G+ + L++L+P+ S V LSNIYA+ +
Sbjct: 476 PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPK--------NSGALVLLSNIYANERQ 527
Query: 446 WPDVESVRKQMKVKRVETEPGSS 468
W DV SVR +M+ V+ PG S
Sbjct: 528 WEDVRSVRMRMRDGNVKKLPGYS 550
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 186/399 (46%), Gaps = 28/399 (7%)
Query: 25 KQIHAQLITNALKSPP--LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQ+HA LI A +P L L+ +Y + K+ F NL + +I
Sbjct: 25 KQLHALLIC-AGYTPCTFLTNHLVNMYSKCGELDHALKL----FDTMPQRNLVSWTAMIS 79
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC-SLSTLWLGRQIHVHVTKRGFM 141
Q+S A G+ + FA S R C SL ++ +G+Q+H K G
Sbjct: 80 -GLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIG 138
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
+ V + L Y+ + KVF++MP + +W AMI+GY + + AL+
Sbjct: 139 SELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEE-----ALL 193
Query: 202 LFRDMLVDVSGVKPTDTTMVC-VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
F+ M+ + + D ++C L L +FG VH + K + E+D+F+G AL
Sbjct: 194 AFKKMIDEEVTI---DQHVLCSTLGACGALKACKFGRSVHSSVVKLGF--ESDIFVGNAL 248
Query: 261 VDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
DMYSK G +++A +F E +NV+++T + G + + + + +R G++PN
Sbjct: 249 TDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPN 308
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
TF+SL AC + +E+G L MK + +P + S +VD+ G+ G LE+A
Sbjct: 309 EFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQA 366
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
I P I W SL+S HG LG+ KI ++
Sbjct: 367 FDEIG-DPTEIAWNSLVSVFGQHG---LGKDAIKIFERM 401
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 122/264 (46%), Gaps = 11/264 (4%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
+ L G+Q+H + G+ + L++ Y+ ++ K+FD MP R+ +W
Sbjct: 15 YAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSW 74
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
AMI+G SK ++ A+ F M + G PT + + LG +E G
Sbjct: 75 TAMISGLSQNSKFSE-----AIRTFCGM--RICGEVPTQFAFSSAIRACASLGSIEMGKQ 127
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H K + +++F+G+ L DMYSKCG + +A +F M K+ ++WTAM G +
Sbjct: 128 MHCLALK--FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 185
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ EA+ M D V + S AC + G + ++ K G E I
Sbjct: 186 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VKLGFESDIFV 244
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGI 382
+ + D+ +AG +E A N + GI
Sbjct: 245 GNALTDMYSKAGDMESASN-VFGI 267
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 4/181 (2%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
V+ ++ L G +H + Y P F+ LV+MYSKCG LD+AL +F M +
Sbjct: 11 VIQTYAKTKRLRRGKQLHALLICAGYTP--CTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
+N+++WTAM +G++ + K +EAIR MR CG P F+S AC G +E G +
Sbjct: 69 RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ K+G+ + S + D+ + G + +A +P K D + W +++ + G
Sbjct: 129 H-CLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDGYSKIG 186
Query: 403 D 403
+
Sbjct: 187 E 187
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 232/444 (52%), Gaps = 26/444 (5%)
Query: 27 IHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTP 85
+H +I + L+S + LI +Y +K Q + VF + +L +N++I
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMY-SKFGRLQDAQ---RVFDGMEVRDLVSWNSIIAAYE 325
Query: 86 PQDSVLVFAYWVSKGLLT--FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK-RGFMF 142
D + + + L D V +L S F LS +GR +H V + R
Sbjct: 326 QNDDPVTALGFFKEMLFVGMRPDLLTVVSLASI--FGQLSDRRIGRAVHGFVVRCRWLEV 383
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
++++ L++ YA I + VF+Q+P R +WN +I GY ++ A +A
Sbjct: 384 DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASE--AIDAY-- 439
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
+M+ + + P T V +L S +G L+ G +HG + K DVF+ T L+D
Sbjct: 440 --NMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFL--DVFVATCLID 495
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG L++A+ +F + ++ + W A+ + + IHG G +A++L MR GVK + +T
Sbjct: 496 MYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHIT 555
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F SL +AC H+GLV+E FD M+ ++ ++P++KHY C+VDL GRAG+LE+AYN + +
Sbjct: 556 FVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNM 615
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
PI+ DA +W +LL+AC +HG+ LG LL++ E +V LSNIYA+
Sbjct: 616 PIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSE--------NVGYYVLLSNIYAN 667
Query: 443 AERWPDVESVRKQMKVKRVETEPG 466
+W VR + + + PG
Sbjct: 668 VGKWEGAVKVRSLARDRGLRKTPG 691
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 157/312 (50%), Gaps = 23/312 (7%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F S + + + +Q+H + G +V++ T L+ YA+ D+S F + ++ +W
Sbjct: 58 FRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSW 117
Query: 179 NAMINGYCSQSK--KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
N+M++ Y + + + DC L+ +SGV+P T VL L G
Sbjct: 118 NSMVSAYVRRGRYRDSMDCVTE--------LLSLSGVRPDFYTFPPVLKACLSLA---DG 166
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H ++ K + E+DV++ +L+ +YS+ G ++ A +F M ++V +W AM +G
Sbjct: 167 EKMHCWVLKMGF--EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFC 224
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDNMKSKWGVEP 354
+G EA+R+LD M+ VK + VT +S+ C + V G +HL+ K G+E
Sbjct: 225 QNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLY---VIKHGLES 281
Query: 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD--VALGEKVGK 412
+ + ++++ + G L++A G+ ++ D + W S+++A + D ALG
Sbjct: 282 DVFVSNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAAYEQNDDPVTALGFFKEM 340
Query: 413 ILLQLQPEVTFV 424
+ + ++P++ V
Sbjct: 341 LFVGMRPDLLTV 352
>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22150, chloroplastic; Flags: Precursor
gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 820
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 225/413 (54%), Gaps = 25/413 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
VF ++ +NT+I D L+ Y + K D T V AL S A +
Sbjct: 375 VFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYIT-VTALLSAA--SN 431
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ--MPMRSSATWN 179
L +G+Q H + ++G F + + LI Y+ + I +K+F+ R ATWN
Sbjct: 432 LRNKEIGKQTHAFLIRQGIQFEGM-NSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWN 490
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+MI+GY K ++FR ML ++P T+ +L SQ+G ++ G +
Sbjct: 491 SMISGYTQNGHTEK-----TFLVFRKMLEQ--NIRPNAVTVASILPACSQIGSVDLGKQL 543
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG+ + Y+ +N VF+ +ALVDMYSK G + A +FS+ +E+N +T+T M G HG
Sbjct: 544 HGFSIRQ-YLDQN-VFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHG 601
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359
G AI L SM++ G+KP+A+TF ++ +AC ++GL++EGL +F+ M+ + ++P +HY
Sbjct: 602 MGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHY 661
Query: 360 SCIVDLLGRAGHLEEAYNFIMGIPIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
CI D+LGR G + EAY F+ G+ + + A LW SLL +C +HG++ L E V + L +
Sbjct: 662 CCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFD 721
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
F V LSN+YA ++W V+ VR+ M+ K ++ E G S ++
Sbjct: 722 KGKNFSGYE------VLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIE 768
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 101/428 (23%), Positives = 185/428 (43%), Gaps = 53/428 (12%)
Query: 25 KQIHAQLITNALKSPPL-YAQLIQLYCTKKASPQ--STKIVHFVFTHFDPPNLFLFNTLI 81
K +H LI S + + L+ +Y + +P +V VF + N+ +NTLI
Sbjct: 127 KAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLI 186
Query: 82 ----RCTPPQDSVLVFAYWVSKGLLTFD-DFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
+ ++ F + + F VF S +R + ++ G + +
Sbjct: 187 SWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKL--- 243
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
++ ++ V ++ I YA DI S ++VFD R+ WN MI Y DC
Sbjct: 244 GDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQN-----DCL 298
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
++ LF + + + + T + S S L +E G HG++ K F E + I
Sbjct: 299 VESIELFLEA-IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNF--RELPIVI 355
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
+L+ MYS+CG + + +F MRE++V++W M + +G +E + L+ M+ G
Sbjct: 356 VNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 415
Query: 317 KPNAVTFTSLFAACC-----------HAGLVEEGLHL------FDNMKSKWGV------- 352
K + +T T+L +A HA L+ +G+ +M SK G+
Sbjct: 416 KIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKL 475
Query: 353 -------EPHIKHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHG 402
E ++ ++ + GH E+ + ++ I+P+A+ S+L AC+ G
Sbjct: 476 FEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIG 535
Query: 403 DVALGEKV 410
V LG+++
Sbjct: 536 SVDLGKQL 543
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 107/251 (42%), Gaps = 32/251 (12%)
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+++FD +P ++ WN +I G+ + AL+ + M T
Sbjct: 58 ARQLFDAIPKPTTVLWNTIIIGFI-----CNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC----GCLDNALL--I 276
L ++ L+ G VH ++ + + + + +L++MY C C + ++ +
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRC--LQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKV 170
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336
F MR KNV+ W + + G+ EA R M VKP+ V+F ++F A + +
Sbjct: 171 FDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSI 230
Query: 337 EEGLHLFDNMKSKWGVEPHIKHY---SCIVDLLGRAGHLE--------------EAYNFI 379
++ ++F + K G E ++K S + + G +E E +N +
Sbjct: 231 KKA-NVFYGLMLKLGDE-YVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTM 288
Query: 380 MGIPIKPDAIL 390
+G+ ++ D ++
Sbjct: 289 IGVYVQNDCLV 299
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 148/418 (35%), Positives = 219/418 (52%), Gaps = 26/418 (6%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLIR-CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALG-- 114
S +I VF + +NT+I C +S FA ++ K L + T V +G
Sbjct: 296 SARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL-KMLDEGEVPTRVTMMGVL 354
Query: 115 -SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA L W +H + K NV V +LI Y+ K + +F+ + +
Sbjct: 355 LACANLGDLERGWF---VHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLE-K 410
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
++ TWNAMI GY C AL LF ++ G+K T+V V++ + +
Sbjct: 411 TNVTWNAMILGYAQNG-----CVKEALNLF--CMMQSQGIKLDCFTLVGVITALADFSVN 463
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+HG + +N+VF+ TALVDMY+KCG + A +F M+E++V+TW AM
Sbjct: 464 RQAKWIHGLAVRACM--DNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMID 521
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G HG G E + L + M+ VKPN +TF S+ +AC H+G VEEGL LF +M+ + +E
Sbjct: 522 GYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLE 581
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P + HYS +VDLLGRAG L++A+NFI +PIKP + ++L AC +H +V LGEK +
Sbjct: 582 PTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQK 641
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P+ V L+NIYAS W V VR M+ K + PG S ++
Sbjct: 642 LFKLDPD--------EGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVE 691
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 19/346 (5%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFV 65
HR +++ L+ T+ + QI +I N + L+ ++I L+C ++ ++ ++ V
Sbjct: 46 HRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHV 105
Query: 66 FTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLST 124
D + + + D++ F + + L D+ + L C L
Sbjct: 106 ELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQL--CGENLDLKK 163
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
GR+IH + GF N+ V T ++ YA + I + K+F++M + +W ++ G
Sbjct: 164 ---GREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y +Q+ AK AL L M +G KP T+V +L + + L G +HGY
Sbjct: 221 Y-AQNGHAK----RALQLVLQM--QEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAF 273
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
++ + E+ V + AL+DMY KCG A L+F MR K V++W M G A +G+ EA
Sbjct: 274 RSGF--ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEA 331
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LH-LFDNMK 347
M D G P VT + AC + G +E G +H L D +K
Sbjct: 332 FATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLK 377
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 129/274 (47%), Gaps = 11/274 (4%)
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
QI + K GF L T +I + S +VF+ + ++ ++ M+ GY S
Sbjct: 65 QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+AL F M+ D V+ C+L + + L+ G +HG + +
Sbjct: 125 SLG-----DALCFFLRMMCD--EVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGF- 176
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E+++F+ TA++ +Y+KC +DNA +F RM+ K++++WT + G A +G A++L+
Sbjct: 177 -ESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVL 235
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M++ G KP++VT S+ A + G + + G E + + ++D+ +
Sbjct: 236 QMQEAGQKPDSVTLVSILPAVADMKALRIGRSIH-GYAFRSGFESLVNVTNALLDMYFKC 294
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
G A G+ K + W +++ C +G+
Sbjct: 295 GSARIARLVFKGMRSKT-VVSWNTMIDGCAQNGE 327
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 218/412 (52%), Gaps = 33/412 (8%)
Query: 69 FDPPNLFLFNTLIRC-TPPQDSVLV----FAYWVSKGLLTFDDFTYVFALGSCARFCSLS 123
+ NL +N+LIR +D +LV FA + L++++ + + C R
Sbjct: 221 LEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWN--SMIDGCVKCGRMEDAQ 278
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
L+ R +++ +I YA N + + +FD+MP R +NAM+
Sbjct: 279 GLF----------DRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMG 328
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY AL +F M D + T++ LS +QLG ++ G +H ++
Sbjct: 329 GYVQNGY-----CMEALGIFYGMQSD-GNFLLDNATLLIALSAIAQLGHIDKGVAIHRFI 382
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
E+ + D +G AL+DMYSKCG ++NA+++F ++EK+V W A+ G+AIHG G
Sbjct: 383 EEIGF--SLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGEL 440
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363
A L M V+P+ +TF L AC HAGLV+EG+ F+ M+ VEP ++HY C+V
Sbjct: 441 AFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMV 500
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
D+LGRAGH+EEA NF+ +P +P+ ++WRSLLSAC H +G+ V + L++L
Sbjct: 501 DILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLD----- 555
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
+ + +V SN+YA +W DV VR MK K ++ PG S ++ H
Sbjct: 556 ---SPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGH 604
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 141/332 (42%), Gaps = 52/332 (15%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD---ISSGKKVFDQ 169
L C R ++ QIH + GF+ N + T +I ++++ I + +F +
Sbjct: 22 LKKCKRLSDIN------QIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFR 75
Query: 170 MPMRSSAT-----------WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
WNA+I Y S K+ A+ L ML + G
Sbjct: 76 HHAFEFDEKEEEEEKDPFLWNAIIKTY-SHGHDPKE----AMWLVSLMLEN--GAFADKF 128
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+ VL S++GL++ G +HG ++K + +D+F+ L+ Y KCGCL A +F
Sbjct: 129 TLSLVLKACSRVGLVKEGMQIHGLLKKLEF--GSDLFLQNCLISFYVKCGCLVRASQVFD 186
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAGLV 336
RM +++ +++ +M G G+ I L + DC + N +++ SL +
Sbjct: 187 RMPKRDSVSYNSMIDGYVKGGR----IDLARVVFDCIPLEERNLISWNSLIRGYAQS--- 239
Query: 337 EEGL----HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
E+G+ LF M E + ++ ++D + G +E+A +P + D + W
Sbjct: 240 EDGILVAWQLFAKMP-----ERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNR-DIVSWA 293
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
+++ +G V + + L PE V
Sbjct: 294 NMIDGYAKNGRV----DIARSLFDEMPERDVV 321
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 228/427 (53%), Gaps = 25/427 (5%)
Query: 45 LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-TPPQDSVLVFAYW--VSKGL 101
LI LY + + K+ H + +L +NT+I D F+ + + G
Sbjct: 187 LIHLYAEFEYMDAAAKLFH----ETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGN 242
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
+ D + V + +C + L +G+ +H + G + T LI+ Y+ I
Sbjct: 243 VECDRVSLVSLISACT---NXRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIE 299
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
G+KVFD++ + A+WN+MI GY +C FN L ++ +KP + TM+
Sbjct: 300 LGRKVFDELADENIASWNSMIYGYV-------ECGFNIEALSLWNVIQSRKIKPDEVTML 352
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
++S G L G ++ Y+E + ++ + V AL+DMY+KCG +D A +FS+M
Sbjct: 353 GLISACRSSGDLHQGIQINSYIESSDHLSGSTVLC-NALIDMYAKCGSMDRAETVFSKMP 411
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
++V++WT++ G AI+G+G EA+ M ++PN+VTF + +AC HAGLV++G +
Sbjct: 412 RRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNSVTFLGVLSACDHAGLVDKGKN 471
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
L+D M + +EP I+H C+VD+ RAG LEEAY F+ +P++P+A++WR L++AC VH
Sbjct: 472 LYDIMCKYYHIEPKIEHCGCMVDMHARAGMLEEAYKFVKDMPVEPNAVVWRMLINACRVH 531
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GD LG + L+ ++ E ED V SNI+A A RW DV R M ++
Sbjct: 532 GDFNLGLNLVSGLIDVKTEH-------GPEDHVISSNIFAEAGRWDDVLQERSLMVAQKA 584
Query: 462 ETEPGSS 468
PG S
Sbjct: 585 VKLPGKS 591
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 141/296 (47%), Gaps = 13/296 (4%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T V + C F S +G +H + K V LIH YA + + + K+F
Sbjct: 148 TLVILISGCVEFGRFS---IGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLF 204
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ +R +WN MI GY K DC NA LFR+M + V+ ++V ++S
Sbjct: 205 HETNVRDLVSWNTMIAGYA----KNNDCR-NAFSLFREM--RIGNVECDRVSLVSLISAC 257
Query: 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT 287
+ L G VH +++ + E + TAL++MYSKCG ++ +F + ++N+ +
Sbjct: 258 TNXRDLHMGKAVHAFIKVSGM--EMMIHFETALINMYSKCGSIELGRKVFDELADENIAS 315
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
W +M G G EA+ L + ++ +KP+ VT L +AC +G + +G+ + ++
Sbjct: 316 WNSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIE 375
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
S + + ++D+ + G ++ A +P + D I W S++ ++G+
Sbjct: 376 SSDHLSGSTVLCNALIDMYAKCGSMDRAETVFSKMP-RRDVISWTSIIVGYAINGE 430
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 174/398 (43%), Gaps = 62/398 (15%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-NKDISSG 163
D F Y + +C R LS + GR IH HV + G +NV V L++ Y+S K +
Sbjct: 39 DHFVYASLIKACNR---LSAIREGRSIHCHVLRFGLDYNVNVLNALVYLYSSAEKSMGCA 95
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDML---VDVSGVKPTDTT 219
+FD++P ++ T N MI+G+ K+ F+A V LF +L D+ VKP T
Sbjct: 96 CALFDKIPEKTIVTVNCMISGF------VKNKRFHAGVGLFNRVLGGGFDLR-VKPNYVT 148
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+V ++S + G G +H Y KT +N+V AL+ +Y++ +D A +F
Sbjct: 149 LVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEV--RNALIHLYAEFEYMDAAAKLFHE 206
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+++++W M G A + A L MR V+ + V+ SL +AC + + G
Sbjct: 207 TNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMG 266
Query: 340 --LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE------------------------ 373
+H F + G+E I + ++++ + G +E
Sbjct: 267 KAVHAFIKVS---GMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGY 323
Query: 374 -------EA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
EA +N I IKPD + L+SAC GD+ G ++ ++ ++
Sbjct: 324 VECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINS-YIESSDHLSG 382
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
V C AL ++YA E+V +M + V
Sbjct: 383 STVLCN-----ALIDMYAKCGSMDRAETVFSKMPRRDV 415
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 223/428 (52%), Gaps = 23/428 (5%)
Query: 47 QLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPP---QDSVLVFAYWVSKGLLT 103
+Y K+ + VF ++ +NT+I + L+ + L
Sbjct: 174 DVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR 233
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
D FT L A + +L G++IH + + G+ +V + ++LI YA +
Sbjct: 234 PDSFTLSSVLPIFAEYVNLLK---GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDS 290
Query: 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
+VF +P +WN++I G C Q+ + L F+ ML+ + +KP + +
Sbjct: 291 CRVFYMLPQHDGISWNSIIAG-CVQNGMFDE----GLKFFQQMLI--AKIKPNHVSFSSI 343
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+ + L L G +HGY+ ++ + + +VFI +ALVDMY+KCG + A IF +M
Sbjct: 344 MPACAHLTTLHLGKQLHGYIIRSRF--DGNVFIASALVDMYAKCGNIRTARWIFDKMELY 401
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++++WTAM G A+HG +AI L M GVKPN V F ++ AC HAGLV+E F
Sbjct: 402 DMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYF 461
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++M + + P ++HY+ + DLLGR G LEEAY FI + I+P +W +LL+AC VH +
Sbjct: 462 NSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKN 521
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463
+ L EKV K L + P+ ++ +V LSNIY++A RW D +R M+ K ++
Sbjct: 522 IELAEKVSKKLFTVDPQ----NIGA----YVLLSNIYSAAGRWKDARKLRIAMRDKGMKK 573
Query: 464 EPGSSILQ 471
+P S ++
Sbjct: 574 KPACSWIE 581
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 196/420 (46%), Gaps = 53/420 (12%)
Query: 17 AITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL 76
++ + S KQ+HAQ++ +L SP L + ++ +Y S I + + + PP
Sbjct: 17 SVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPS---PPTTLA 73
Query: 77 FNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
+ ++IRC S+ F ++ G D + L SC + L G +H
Sbjct: 74 WKSIIRCYTSHGLFLHSLSFFIQMLASGKYP-DHNVFPSVLKSCTL---MKDLRFGESVH 129
Query: 133 VHVTKRGFMFNVLVATTLIHFYA---SNKDISSGKKVFDQ-------------------- 169
+ + G F++ L++ Y+ S +++++ KKVFD+
Sbjct: 130 GCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSL 189
Query: 170 ------MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
MP R +WN +I+G +Q+ +D AL++ R+M + ++P T+ V
Sbjct: 190 RKVFEMMPKRDIVSWNTVISG-NAQNGMHED----ALMMVREM--GNADLRPDSFTLSSV 242
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
L + ++ L G +HGY + Y + DVFIG++L+DMY+KC +D++ +F + +
Sbjct: 243 LPIFAEYVNLLKGKEIHGYAIRNGY--DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH 300
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+ ++W ++ G +G +E ++ M +KPN V+F+S+ AC H + G L
Sbjct: 301 DGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLH 360
Query: 344 DN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++S++ I S +VD+ + G++ A +I D + W +++ +HG
Sbjct: 361 GYIIRSRFDGNVFIA--SALVDMYAKCGNIRTA-RWIFDKMELYDMVSWTAMIMGYALHG 417
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 183/311 (58%), Gaps = 17/311 (5%)
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+K+FD M +R+ +W+AMI GY A DC AL +FR ++ +SG+ P TTM+
Sbjct: 226 ARKIFDVMGVRNEVSWSAMIGGYV-----ASDCMKEALDIFR--MMQLSGIDPDLTTMLG 278
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL S L L+ G C HGY+ + D I AL+DMYSKCG + A +F+RM
Sbjct: 279 VLPACSHLAALQHGFCSHGYLIVRGF--ATDTLICNALIDMYSKCGKISFAREVFNRMDR 336
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++++W AM G IHG G EA+ L + G+KP+ +TF L ++C H+GLV EG
Sbjct: 337 HDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLW 396
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
FD M + + P ++H C+VD+LGRAG ++EA++FI +P +PD +W +LLSAC +H
Sbjct: 397 FDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHK 456
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
++ LGE+V K + L PE T +FV LSNIY++A RW D +R K ++
Sbjct: 457 NIELGEEVSKKIQSLGPEST--------GNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508
Query: 463 TEPGSSILQTT 473
PG S ++
Sbjct: 509 KIPGCSWIEIN 519
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 14/224 (6%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
Y+ L +C + SL+ ++IH H K + V L Y S + +++F
Sbjct: 10 NYLHLLEACIQSKSLTE---AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
D++P S WN +I Y A + F+ A+ L+ ML GV+P T VL
Sbjct: 67 DEIPNPSVILWNQIIRAY------AWNGPFDGAIDLYHSMLH--LGVRPNKYTYPFVLKA 118
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S L +E G +H + K F + E+DVF+ TALVD Y+KCG L A +FS M ++V+
Sbjct: 119 CSGLLAIEDGVEIHSH-AKMFGL-ESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVV 176
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
W AM G +++G ++A++L+ M++ G+ PN+ T + C
Sbjct: 177 AWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC 220
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 20/240 (8%)
Query: 120 CS-LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
CS L+ L G H ++ RGF + L+ LI Y+ IS ++VF++M +W
Sbjct: 283 CSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSW 342
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI GY AL LF D+L G+KP D T +C+LS S GL+ G
Sbjct: 343 NAMIIGY-----GIHGLGMEALGLFHDLL--ALGLKPDDITFICLLSSCSHSGLVMEGRL 395
Query: 239 VHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGMA 296
M + F +P + I +VD+ + G +D A M E +V W+A+ +
Sbjct: 396 WFDAMSRDFSIVPRMEHCI--CMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 453
Query: 297 IHGK---GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
IH G E + + S+ N V +++++A AG ++ H+ K WG++
Sbjct: 454 IHKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIYSA---AGRWDDAAHIRITQKD-WGLK 508
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L +Y C + A +F + +V+ W + A +G + AI L SM GV+PN
Sbjct: 49 LTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPN 108
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
T+ + AC +E+G+ + + K +G+E + + +VD + G L EA
Sbjct: 109 KYTYPFVLKACSGLLAIEDGVEIHSHAK-MFGLESDVFVCTALVDFYAKCGILVEAQRLF 167
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
+ + D + W ++++ C+++G L + ++++Q+Q E
Sbjct: 168 SSMSHR-DVVAWNAMIAGCSLYG---LCDDAVQLIMQMQEE 204
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 247/453 (54%), Gaps = 28/453 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+H+++I L + L+ +Y K A+ S VF N+ + +I
Sbjct: 71 KQLHSRVIRLGLALDVCVGCSLVDMY-AKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129
Query: 84 TPP-----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
++++ +F +S G + + F++ L +C +LS + G Q++ + K
Sbjct: 130 YAQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACG---NLSDPYTGEQVYSYAVKL 185
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G V +LI YA + + +K FD + ++ ++NA+++GY K +
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE----- 240
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A +LF + + +G+ + T +LS ++ +G + G +HG + K Y +++ I
Sbjct: 241 AFLLFNE--IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY--KSNQCICN 296
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+ MYS+CG ++ A +F+ M ++NV++WT+M TG A HG A+ + M + G KP
Sbjct: 297 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 356
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +T+ ++ +AC H G++ EG F++M + G+ P ++HY+C+VDLLGR+G L EA F
Sbjct: 357 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 416
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +P+ DA++WR+LL AC VHG+ LG +++L+ +P+ D A ++ LSN
Sbjct: 417 INSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD----DPAA----YILLSN 468
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ASA +W DV +RK MK + + E G S ++
Sbjct: 469 LHASAGQWKDVVKIRKSMKERNLIKEAGCSWIE 501
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 23/334 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY---ASNKDIS 161
D FTY L +C L L LG+Q+H V + G +V V +L+ Y A++ +
Sbjct: 50 DRFTYSSVLSACTE---LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 106
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKPTDTTM 220
+KVF+QMP + +W A+I Y ++ +C A+ LF M +SG ++P +
Sbjct: 107 DSRKVFEQMPEHNVMSWTAIITAYA----QSGECDKEAIELFCKM---ISGHIRPNHFSF 159
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VL L G V+ Y K N +G +L+ MY++ G +++A F +
Sbjct: 160 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVN--CVGNSLISMYARSGRMEDARKAFDIL 217
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
EKN++++ A+ G A + K EA L + + D G+ +A TF SL + G + +G
Sbjct: 218 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 277
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ + K G + + + ++ + R G++E A+ + + + I W S+++
Sbjct: 278 QIHGRLL-KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAK 335
Query: 401 HGDVALGEKVGKILLQ--LQP-EVTFVDV--ACT 429
HG ++ +L+ +P E+T+V V AC+
Sbjct: 336 HGFATRALEMFHKMLETGTKPNEITYVAVLSACS 369
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 133/294 (45%), Gaps = 56/294 (19%)
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVFD+MP R+ TW MI + CA +A+ LF DM ++SG P T VL
Sbjct: 6 KVFDKMPERNLVTWTLMITRFAQLG-----CARDAIDLFLDM--ELSGYVPDRFTYSSVL 58
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC---GCLDNALLIFSRMR 281
S ++LGLL G +H + + DV +G +LVDMY+KC G +D++ +F +M
Sbjct: 59 SACTELGLLALGKQLHSRVIRLGLAL--DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 116
Query: 282 EKNVLTWTAMATGMAIHGK-GNEAIRLLDSMRDCGVKPNAVTFTSLFAAC---------- 330
E NV++WTA+ T A G+ EAI L M ++PN +F+S+ AC
Sbjct: 117 EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 176
Query: 331 -------------------------CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+G +E+ FD + E ++ Y+ IVD
Sbjct: 177 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL-----FEKNLVSYNAIVDG 231
Query: 366 LGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
+ EEA +N I I A + SLLS G + GE++ LL+
Sbjct: 232 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 285
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 44/213 (20%)
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F +M E+N++TWT M T A G +AI L M G P+ T++S+ +AC
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 333 AGLVEEGLHLFD------------------NMKSKWGV---------------EPHIKHY 359
GL+ G L +M +K E ++ +
Sbjct: 64 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123
Query: 360 SCIVDLLGRAGHLE----EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+ I+ ++G + E + ++ I+P+ + S+L AC D GE+V +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
+L V C +++ YA + R D
Sbjct: 184 KL----GIASVNCVGNSLISM---YARSGRMED 209
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 184/332 (55%), Gaps = 17/332 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N+ T+I Y N I+ +K+FD MP R +W A+I+GY + AL +
Sbjct: 324 NISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE-----ALNM 378
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M D G +T C LS + + LE G VHG + K + E F+G AL+
Sbjct: 379 FVEMKRD--GESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGF--ETGCFVGNALLG 434
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCG D A +F + EK+V++W M G A HG G +A+ L +SM+ GVKP+ +T
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ +AC H+GL++ G F +M + V+P KHY+C++DLLGRAG LEEA N + +
Sbjct: 495 MVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM 554
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P P A W +LL A +HG+ LGEK +++ +++P+ S +V LSN+YA+
Sbjct: 555 PFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQ--------NSGMYVLLSNLYAA 606
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
+ RW DV +R +M+ V+ G S ++
Sbjct: 607 SGRWVDVGKMRSKMREAGVQKVTGYSWVEVQN 638
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 22/229 (9%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
T+ AL +CA ++ L LG+Q+H V K GF V L+ Y VF
Sbjct: 393 TFSCALSTCA---DIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVF 449
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227
+ + + +WN MI GY ALVLF M +GVKP + TMV VLS
Sbjct: 450 EGIEEKDVVSWNTMIAGYARHG-----FGRQALVLFESM--KKAGVKPDEITMVGVLSAC 502
Query: 228 SQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNV 285
S GL++ G M++ + + P + + T ++D+ + G L+ A + M +
Sbjct: 503 SHSGLIDRGTEYFYSMDRDYNVKPTSKHY--TCMIDLLGRAGRLEEAENLMRNMPFDPGA 560
Query: 286 LTWTAMATGMAIHGK---GNEAIRLLDSM--RDCGVKPNAVTFTSLFAA 329
+W A+ IHG G +A ++ M ++ G+ V ++L+AA
Sbjct: 561 ASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGM---YVLLSNLYAA 606
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 58/268 (21%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+++ I + N S +VF+ MP RSS ++NAMI+GY +K L
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAK---------FSL 95
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
RD+ MPE D+F ++
Sbjct: 96 ARDLFDK---------------------------------------MPERDLFSWNVMLT 116
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
Y + L A +F M +K+V++W AM +G A +G +EA + + M N+++
Sbjct: 117 GYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM----PHRNSIS 172
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ L AA H G ++E LF++ +S W + ++C++ + L +A +
Sbjct: 173 WNGLLAAYVHNGRLKEARRLFES-QSNW----ELISWNCLMGGYVKRNMLGDARQLFDRM 227
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKV 410
P++ D I W +++S GD++ +++
Sbjct: 228 PVR-DVISWNTMISGYAQVGDLSQAKRL 254
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 127/286 (44%), Gaps = 37/286 (12%)
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS--KKAKDCAF 197
F +NV++ Y N+ + K+FD MP + +WNAM++GY +A++ F
Sbjct: 109 FSWNVMLTG-----YVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEARE-VF 162
Query: 198 NAL-----VLFRDMLVD-VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF---- 247
N + + + +L V + + + S L+ + + GY+++
Sbjct: 163 NKMPHRNSISWNGLLAAYVHNGRLKEARRL--FESQSNWELISWNCLMGGYVKRNMLGDA 220
Query: 248 -----YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
MP DV ++ Y++ G L A +F+ ++V TWTAM +G +G +
Sbjct: 221 RQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVD 280
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EA + D M VK N +++ ++ A + LF+ M + +I ++ +
Sbjct: 281 EARKYFDEM---PVK-NEISYNAMLAGYVQYKKMVIAGELFEAMPCR-----NISSWNTM 331
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS--ACNVHGDVAL 406
+ G+ G + +A +P + D + W +++S A N H + AL
Sbjct: 332 ITGYGQNGGIAQARKLFDMMP-QRDCVSWAAIISGYAQNGHYEEAL 376
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 122/268 (45%), Gaps = 18/268 (6%)
Query: 150 LIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC-----SQSKK------AKDC-AF 197
L+ Y + +++FD+MP+R +WN MI+GY SQ+K+ +D +
Sbjct: 207 LMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTW 266
Query: 198 NALV--LFRDMLVDVSGVKPTDTTMVCVLSVSSQL-GLLEFGACVHGYMEKTFYMPENDV 254
A+V ++ +VD + + + +S ++ L G +++ V E MP ++
Sbjct: 267 TAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIA-GELFEAMPCRNI 325
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314
++ Y + G + A +F M +++ ++W A+ +G A +G EA+ + M+
Sbjct: 326 SSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRD 385
Query: 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374
G N TF+ + C +E G + + K G E + ++ + + G +E
Sbjct: 386 GESSNRSTFSCALSTCADIAALELGKQVHGQV-VKAGFETGCFVGNALLGMYFKCGSTDE 444
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHG 402
A + GI K D + W ++++ HG
Sbjct: 445 ANDVFEGIEEK-DVVSWNTMIAGYARHG 471
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 240/459 (52%), Gaps = 32/459 (6%)
Query: 17 AITTPSHIKQIHAQLIT-NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF 75
++ P KQIHA + + + +YC + + K+ F NL
Sbjct: 120 SLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKL----FDEIPERNLE 175
Query: 76 LFNTLIRCT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQI 131
+N I + P++++ F + G + T+ L +C+ L LG Q+
Sbjct: 176 TWNAYISNSVTDGRPKEAIEAFIEFRRIGGQP-NSITFCGFLNACSDGLLLD---LGMQM 231
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H V + GF +V V LI FY K I S + +F +M M+++ +W +++ Y +
Sbjct: 232 HGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHED 291
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
K A VL+ ++ V+ +D + VLS + + LE G +H + K E
Sbjct: 292 EK-----ASVLYLRSRKEI--VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACV--E 342
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
++F+G+ALVDMY KCGC++++ F M EKN++T ++ G A G+ + A+ L + M
Sbjct: 343 RNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDM 402
Query: 312 --RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
R CG PN +TF SL +AC AG VE G+ +FD+MKS +G+EP +HYSCIVD+LGRA
Sbjct: 403 APRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRA 462
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G +E+A+ FI +PIKP +W +L +AC +HG LG + L +L P+
Sbjct: 463 GMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPK--------D 514
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
S + V LSN +A+A RW + +VR++MK ++ G S
Sbjct: 515 SGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYS 553
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 107/417 (25%), Positives = 192/417 (46%), Gaps = 35/417 (8%)
Query: 2 LSLPGHRCFALLKLKAITTPSHI--KQIHAQLITNALKSPP---LYAQLIQLYCTKKASP 56
+SL LL AI+T S + +HA+++ L SPP L LI +Y +K P
Sbjct: 1 MSLLTADALGLLLKNAISTSSMRLGRVVHARIV-KTLDSPPPPFLANYLINMY-SKLDHP 58
Query: 57 QSTKIVHFVFTHFDPP-NLFLFNTLIRCTPPQD--SVLVFAYW-VSKGLLTFDDFTYVFA 112
+S ++V P N+ + +L+ S +F ++ + + + +DFT+
Sbjct: 59 ESARLV----LRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCV 114
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
+ A SL G+QIH K G + +V V + Y + +K+FD++P
Sbjct: 115 FKAVA---SLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPE 171
Query: 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232
R+ TWNA I+ + + + A A + FR + G +P T L+ S L
Sbjct: 172 RNLETWNAYISNSVTDGRPKE--AIEAFIEFRRI-----GGQPNSITFCGFLNACSDGLL 224
Query: 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292
L+ G +HG + ++ + + DV + L+D Y KC + ++ +IF+ M KN ++W ++
Sbjct: 225 LDLGMQMHGLVFRSGF--DTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLV 282
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---K 349
+ + +A L R V+ + +S+ +AC AG+ GL L ++ + K
Sbjct: 283 AAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSAC--AGMA--GLELGRSIHAHAVK 338
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
VE +I S +VD+ G+ G +E++ +P K + + SL+ G V +
Sbjct: 339 ACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTLNSLIGGYAHQGQVDM 394
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 195/342 (57%), Gaps = 19/342 (5%)
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
M +V+ T +I Y + +++F +M MR+ TWNAMI GY + A + L
Sbjct: 194 MRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGR-----AEDGL 248
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFR ML +GVKP ++ VL S L L+ G VH + K +D GT+L
Sbjct: 249 RLFRTMLE--TGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPL--SSDTTAGTSL 304
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
V MYSKCG L +A +F ++ K+V+ W AM +G A HG G +A+RL D M+ G+KP+
Sbjct: 305 VSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDW 364
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF ++ AC HAGLV+ G+ F+ M+ +G+E +HY+C+VDLLGRAG L EA + I
Sbjct: 365 ITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIK 424
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
+P KP ++ +LL AC +H ++ L E K LL+L P + + +V L+N+Y
Sbjct: 425 SMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTI--------ATGYVQLANVY 476
Query: 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTLDGFR 482
A+ RW V S+R+ MK V PG S ++ + + GFR
Sbjct: 477 AAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINS--VVHGFR 516
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 100/422 (23%), Positives = 174/422 (41%), Gaps = 56/422 (13%)
Query: 46 IQLYCTKKASPQSTK----IVHFVFTH-----FDPPNLFLFNTLI----RCTPPQDSVLV 92
++L KK SP T + +V +H F+ N+ N LI RC +V V
Sbjct: 4 LRLLRRKKRSPLLTSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRV 63
Query: 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM-FNVLVATTLI 151
F K +T++ FA RQ+ + + + +N+++A
Sbjct: 64 FEDMKVKSTVTWNSILAAFAKKP-------GHFEYARQLFEKIPQPNTVSYNIMLACHWH 116
Query: 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS 211
H + + FD MP++ A+WN MI+ + A LF M
Sbjct: 117 HL-----GVHDARGFFDSMPLKDVASWNTMISALAQVGLMGE-----ARRLFSAM----- 161
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
P + VS + + A V + + P V TA++ Y K G ++
Sbjct: 162 ---PEKNCVSWSAMVSGYVACGDLDAAVECF----YAAPMRSVITWTAMITGYMKFGRVE 214
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
A +F M + ++TW AM G +G+ + +RL +M + GVKPNA++ TS+ C
Sbjct: 215 LAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCS 274
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ ++ G + + K + + +V + + G L++A+ + IP K D + W
Sbjct: 275 NLSALQLGKQV-HQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRK-DVVCW 332
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDV--ACTSEDFVALSNIYASA 443
+++S HG G+K ++ +++ E +TFV V AC V L Y +
Sbjct: 333 NAMISGYAQHG---AGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNT 389
Query: 444 ER 445
R
Sbjct: 390 MR 391
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+LS L LG+Q+H V K + T+L+ Y+ D+ ++F Q+P + WNA
Sbjct: 275 NLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNA 334
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI+GY K AL LF +M + G+KP T V VL + GL++ G
Sbjct: 335 MISGYAQHGAGKK-----ALRLFDEMKKE--GLKPDWITFVAVLLACNHAGLVDLGVQYF 387
Query: 241 GYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
M + F + PE+ +VD+ + G L A+ + M
Sbjct: 388 NTMRRDFGIETKPEH----YACMVDLLGRAGKLSEAVDLIKSM 426
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 210/351 (59%), Gaps = 20/351 (5%)
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
L LGR + V G LV + L+ Y +++ ++VFD + + + WNA+I G
Sbjct: 249 LALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITG 308
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY-M 243
Y +Q+ +K+ A+ LF M +G +P T+V VLS + +G LE G + Y +
Sbjct: 309 Y-AQNGMSKE----AISLFHSM--RQAGARPDKITLVGVLSACAAVGALELGTELDRYAL 361
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
++ FY ++V++GTALVDMYSKCG L A+ +F ++ KN +W A+ G+A +G+G E
Sbjct: 362 QRGFY---SNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNGRGQE 418
Query: 304 AIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
AIR + MR G++P+ +TF + +AC HAGL+++G FD++ S++ + P I+HYSC+
Sbjct: 419 AIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEHYSCM 478
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDLL RAGHLEEA++FI IP KPDA++ +LL+AC +V + +V ++ L+P
Sbjct: 479 VDLLARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLEPS-- 536
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
S ++V S IYAS++R D +R M+ + V PG S ++ +
Sbjct: 537 ------NSWNYVVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCSWIEVS 581
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 200/438 (45%), Gaps = 31/438 (7%)
Query: 22 SHIKQIHAQLITNALKSP--PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
S I+Q+HA L+ + P ++L+ + + S + VH + T P F FN
Sbjct: 43 STIQQLHAHLLHHDRPIPYNHFLSKLLSISSSSSPSTAAADYVHLLLTAHPTPTAFSFNV 102
Query: 80 LIR---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
+R + P+ + L + + + L D +T F L + AR + + + +
Sbjct: 103 ALRFFAASRPR-TTLQLSLRMLRAALRPDAYTLPFLLLAAARCPAPAFAASAHAL---LQ 158
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
K G + +L+ Y++ + ++VFD + R +WN+MI Y Q+ KD
Sbjct: 159 KLGLHNHDHTVHSLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAY--QAAGMKD-- 214
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
+A +FR M+ + V P T+ VL+ G L G + ++ K+ M E +
Sbjct: 215 -DAARMFRAMVAE-GAVPPNAVTVAVVLAACRDAGDLALGRWLEEWV-KSVGM-EVGSLV 270
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
G+ALV MY KCG + A +F + K+ + W A+ TG A +G EAI L SMR G
Sbjct: 271 GSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGA 330
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
+P+ +T + +AC G +E G L D + G ++ + +VD+ + G L A
Sbjct: 331 RPDKITLVGVLSACAAVGALELGTEL-DRYALQRGFYSNVYVGTALVDMYSKCGDLTRAI 389
Query: 377 NFIMGIPIKPDAILWRSLLS--ACNVHGDVALGE-KVGKILLQLQP-EVTFVDV--ACTS 430
+P K +A W +L+ A N G A+ + ++ + L+P ++TF+ V AC
Sbjct: 390 QVFEKLPCKNEAS-WNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVH 448
Query: 431 EDFVALSNIYASAERWPD 448
+ + RW D
Sbjct: 449 ------AGLLKDGRRWFD 460
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 210/367 (57%), Gaps = 20/367 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ FT+ L +CA +L+ L +G Q+ H K GF VA +LI YA + I +
Sbjct: 375 NHFTFSSTLKACA---NLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K FD + ++ ++N +I+ Y + AL LF + ++ G+ + T +L
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEE-----ALELFNE--IEDQGMGASAFTFASLL 484
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S ++ +G + G +H + K+ V AL+ MYS+CG +++A +F M ++N
Sbjct: 485 SGAASIGTIGKGEQIHARVIKSGLKLNQSVC--NALISMYSRCGNIESAFQVFEDMEDRN 542
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++WT++ TG A HG +A+ L M + GV+PN VT+ ++ +AC H GLV EG F
Sbjct: 543 VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFK 602
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M ++ GV P ++HY+C+VD+LGR+G L EA FI +P K DA++WR+ L AC VHG++
Sbjct: 603 SMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNL 662
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LG+ K++++ +P D A ++ LSN+YAS +W +V ++RK MK K + E
Sbjct: 663 ELGKHAAKMIIEQEPH----DPAA----YILLSNLYASTSKWDEVSNIRKAMKEKNLIKE 714
Query: 465 PGSSILQ 471
G S ++
Sbjct: 715 AGCSWVE 721
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 160/380 (42%), Gaps = 57/380 (15%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L C R S +G +H +T+ + + +LI Y+ +F
Sbjct: 68 TYSLFLKKCIRTRSFD---IGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124
Query: 168 DQM-PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
M R +W+AM++ + + + F AL+ F DM+ + G P +
Sbjct: 125 QLMGSSRDLISWSAMVSCFANN-----NMGFRALLTFVDMIEN--GYYPNEYCFAAATRA 177
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC-GCLDNALLIFSRMREKNV 285
S + G + G++ KT Y+ ++DV +G L+DM+ K G L +A +F +M E+N
Sbjct: 178 CSTAEFVSVGDSIFGFVVKTGYL-QSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 236
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC-----------HAG 334
+TWT M T + G EAI L M G +P+ T + + +AC H+
Sbjct: 237 VTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQ 296
Query: 335 LVEEGLHL-------FDNMKSKWGVEPHI----KHYSCIVD------------LLGRAGH 371
+ GL L NM +K V+ + K + I+D + + G+
Sbjct: 297 AIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGY 356
Query: 372 LEEAYNFIMGIPIK---PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
EEA + G+ + P+ + S L AC + +GE+V ++L F V C
Sbjct: 357 DEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKL----GFSSVNC 412
Query: 429 TSEDFVALSNIYASAERWPD 448
+ +++ YA + R D
Sbjct: 413 VANSLISM---YARSGRIDD 429
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 193/344 (56%), Gaps = 17/344 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GRQ+H K F ++ +A+ LI Y+ + K++FD++ WN+M+ G
Sbjct: 409 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 468
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S + A F+ M G+ P+ + VLS ++L L G VH + +
Sbjct: 469 NSLDKE-----AFTFFKKMRE--KGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREG 521
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
YM ND F+G+AL+DMYSKCG +D A +F M KN +TW M G A +G G+EA+ L
Sbjct: 522 YM--NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLL 579
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M G KP+ +TF ++ AC H+GLV+ G+ +F++M+ + GVEP + HY+CI+D LG
Sbjct: 580 YEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLG 639
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG L EA I +P K D I+W LLS+C V+ DV+L + + L L P+
Sbjct: 640 RAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQ------- 692
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +V L+NIY+S RW D ++VR+ M +V +PG S ++
Sbjct: 693 -NSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 735
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 157/330 (47%), Gaps = 48/330 (14%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+ IH H+ + + ++ LI FYA I + +++FDQMP R TWNA++ YC
Sbjct: 24 GKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCK 83
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTD-----TTMVCVLSVSSQLGLL---EFGACV 239
S+ +A VLF +M P T++ L+ + G L E G
Sbjct: 84 ASELE-----DAHVLFAEM--------PERNIVSWNTLISALTRNGACGALVDVECGRRC 130
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
HG K +N++++G AL+ MY+KC C+ +A+ F + E N +++TAM G+A
Sbjct: 131 HGISIKIGL--DNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSD 188
Query: 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS----------- 348
+ NEA RL M + ++V+ +S+ C G E GLH +++ S
Sbjct: 189 QVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCL 248
Query: 349 --KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K G E + + ++D+ + G+++ A + +P + + W +++ +G +
Sbjct: 249 TIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP-EVSVVSWNVMIAG---YGQKSQ 304
Query: 407 GEKVGKILLQLQ------PEVTFVD--VAC 428
K + L ++Q E+T+V+ VAC
Sbjct: 305 SSKAIEYLQRMQYHGFEPDEITYVNMLVAC 334
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 162/350 (46%), Gaps = 32/350 (9%)
Query: 18 ITTPSHI--KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
I +H+ K IHA ++ + L L +LI+ Y A S ++ F ++
Sbjct: 16 IDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRL----FDQMPKRDI 71
Query: 75 FLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+ +N ++ + + +D+ ++FA + +++++ T + AL +L + GR+
Sbjct: 72 YTWNAILGAYCKASELEDAHVLFAEMPERNIVSWN--TLISALTRNGACGALVDVECGRR 129
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
H K G N+ V L+ YA + I + F +P + ++ AM+ G
Sbjct: 130 CHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLAD--- 186
Query: 191 KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG---------ACVHG 241
D A LFR ML + + ++ VL V S+ G EFG + VHG
Sbjct: 187 --SDQVNEAFRLFRLMLRNR--IHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHG 242
Query: 242 YMEKTFYMP---ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+ E+D+ + +L+DMY+K G +D+A +IF M E +V++W M G
Sbjct: 243 QQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQK 302
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+ ++AI L M+ G +P+ +T+ ++ AC +G +E G +FD M S
Sbjct: 303 SQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS 352
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 44/301 (14%)
Query: 159 DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
DI +G+++FD M S ++WN +++GY SQ++ K+ A+ LFR+M V P T
Sbjct: 339 DIEAGRQMFDGMSSPSLSSWNTILSGY-SQNENHKE----AVKLFREM--QFRSVHPDRT 391
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T+ +LS + + LLE G VH +K + D+++ + L+ MYSKCG ++ A IF
Sbjct: 392 TLAIILSSLAGMMLLEGGRQVHAVSQKAVF--RTDIYLASGLIGMYSKCGKVEMAKRIFD 449
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
R+ E +++ W +M G++++ EA MR+ G+ P+ ++ ++ + C + +
Sbjct: 450 RIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQ 509
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA----------------------- 375
G + + ++ G S ++D+ + G ++ A
Sbjct: 510 GRQVHSQI-AREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYA 568
Query: 376 -----------YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV 424
Y ++G KPD I + ++L+AC+ G V G K+ + Q V
Sbjct: 569 QNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLV 628
Query: 425 D 425
D
Sbjct: 629 D 629
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
F+Y L CA+ SLS GRQ+H + + G+M + V + LI Y+ D+ + + V
Sbjct: 492 FSYATVLSCCAKLSSLSQ---GRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 548
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD M +++ TWN MI+GY C A++L+ DM+ SG KP T V VL+
Sbjct: 549 FDMMLGKNTVTWNEMIHGYAQNG-----CGDEAVLLYEDMI--GSGEKPDGITFVAVLTA 601
Query: 227 SSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
S GL++ G + M++ + P D + T ++D + G L A ++ +M
Sbjct: 602 CSHSGLVDTGIKIFNSMQQEHGVEPLVDHY--TCIIDSLGRAGRLHEAEVLIDKM 654
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/494 (29%), Positives = 249/494 (50%), Gaps = 56/494 (11%)
Query: 15 LKAITTPSHI---KQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFD 70
+ +TP + ++IHA+++ N + + A LI +Y +S ++ + VF
Sbjct: 214 ISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEARE----VFDKMK 269
Query: 71 PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
++ +N +I C +++ ++ +G T+V LG+C+ S+ L
Sbjct: 270 KRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGF-KRTKATFVSILGACS---SVKALA 325
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI---- 182
GR +H H+ +RG V VAT L++ YA + +KVF+ M R + W+ +I
Sbjct: 326 QGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYA 385
Query: 183 -NGYCSQSKKAKD------------------------CAFNALVLFRDMLVDVSGVKPTD 217
NGY ++KA+ CA A+ +FR+M +G+KP
Sbjct: 386 SNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREM-TGAAGLKPDA 444
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
T + VL + LG L +H + ++ E++V + L++MY++CG L+ A +F
Sbjct: 445 VTFIAVLEACASLGRLSEVKALHAQISESEL--ESNVVVTNTLINMYARCGSLEEAERLF 502
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
+ +EK V++WTAM + +G+ EA+ L M GVKP+ VT+TS+ C H G +E
Sbjct: 503 AAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLE 562
Query: 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+G F +M + P H++ +VDLLGR+G L +A + +P +PD + W + L+A
Sbjct: 563 QGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTA 622
Query: 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
C +HG + LGE + + +L P T ++A+SNIYA+ W V SVRK+M+
Sbjct: 623 CRIHGKLELGEAAAERVYELDPSST--------APYIAMSNIYAAHGMWEKVASVRKKME 674
Query: 458 VKRVETEPGSSILQ 471
+ ++ PG S ++
Sbjct: 675 ERGLKKLPGLSFIE 688
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 21/331 (6%)
Query: 95 YWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIH 152
YW +GL T D T+V LG+C S+L GR+IH V G +A L+
Sbjct: 98 YWRMNLQGLGT-DHVTFVSVLGAC------SSLAQGREIHNRVFYSGLDSFQSLANALVT 150
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212
YA + K++F + R +WNA+I + SQS AL +F++M D
Sbjct: 151 MYARFGSVGDAKRMFQSLQTRDETSWNAVILAH-SQSGDWS----GALRIFKEMKCD--- 202
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
VKP TT + V+S S +L G +H + + + D+ + TAL++MY KCG
Sbjct: 203 VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGF--DTDLVVATALINMYGKCGSSHE 260
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F +M+++++++W M ++G +EA+ L + G K TF S+ AC
Sbjct: 261 AREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSS 320
Query: 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
+ +G + ++ + G++ + + +V++ + G LEEA + + DA+ W
Sbjct: 321 VKALAQGRLVHSHILER-GLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR-DAVAWS 378
Query: 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
+L+ A +G K K+ +L T
Sbjct: 379 TLIGAYASNGYGKDARKARKVFDRLGSRDTI 409
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 24/303 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T++ L SC+ S + GR +H + F + +V LI Y + +
Sbjct: 6 DNVTFLTVLCSCS---SCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62
Query: 165 KVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
VF+ M R+ +WNAMI Y + ALVL+ M ++ G+ T V
Sbjct: 63 SVFESMDWRQRNVVSWNAMIAAYAQNGHSTE-----ALVLYWRM--NLQGLGTDHVTFVS 115
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF--IGTALVDMYSKCGCLDNALLIFSRM 280
VL S L G +H + FY D F + ALV MY++ G + +A +F +
Sbjct: 116 VLGACSSLAQ---GREIH---NRVFY-SGLDSFQSLANALVTMYARFGSVGDAKRMFQSL 168
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
+ ++ +W A+ + G + A+R+ M+ C VKPN+ T+ ++ + ++ EG
Sbjct: 169 QTRDETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGR 227
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ + + G + + + ++++ G+ G EA + K D + W ++ +
Sbjct: 228 KIHAEIVAN-GFDTDLVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIGCYVL 285
Query: 401 HGD 403
+GD
Sbjct: 286 NGD 288
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 9/192 (4%)
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
+P + T + VL S G + G +H + + + E D +G AL+ MY KC L +A
Sbjct: 4 QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRF--ERDTMVGNALISMYGKCDSLVDA 61
Query: 274 LLIFSRM--REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+F M R++NV++W AM A +G EA+ L M G+ + VTF S+ AC
Sbjct: 62 RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ +G + + + G++ + +V + R G + +A + + D W
Sbjct: 122 S---LAQGREIHNRVFYS-GLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTR-DETSW 176
Query: 392 RSLLSACNVHGD 403
+++ A + GD
Sbjct: 177 NAVILAHSQSGD 188
>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
Length = 522
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/274 (44%), Positives = 177/274 (64%), Gaps = 12/274 (4%)
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
+ L LF +M S +K + T+V ++S ++LG L GA H Y+ K + + + F+G
Sbjct: 133 SVLTLFIEM--QKSLIKANEVTLVALISACAELGALSQGAWAHVYVLK--HNLKLNHFVG 188
Query: 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
TAL+DMYSKCGCLD A +F ++ ++ L + AM G AIHG G++A+ L M G+
Sbjct: 189 TALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLA 248
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
P+ VT +C H GLVEEG +F++MK +GVEP ++HY C+VDLLGRAG L EA
Sbjct: 249 PDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEE 308
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
++ +P+KP+A++WRSLL A VHG++ +GE V K L+QL+PE TS ++V LS
Sbjct: 309 RVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPE--------TSGNYVLLS 360
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
N+YAS RW DV+ VRK MK + PGSS+++
Sbjct: 361 NMYASINRWDDVKRVRKLMKDHGINKVPGSSLVE 394
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 123/287 (42%), Gaps = 26/287 (9%)
Query: 28 HAQLITNALKSPP--LYAQLIQ-LYCTKKASPQSTKIVHFVFTHFD-PPNLFLFNTLIRC 83
HA I N + +P LY LI L K + + + V TH PN F F +L +
Sbjct: 58 HALSIFNHIPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKA 117
Query: 84 TPPQ----------DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
Q SVL + K L+ ++ T V + +CA +LS G HV
Sbjct: 118 CGSQPWLRHDIFLIKSVLTLFIEMQKSLIKANEVTLVALISACAELGALSQ---GAWAHV 174
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+V K N V T LI Y+ + ++FDQ+P R + +NAMI G+
Sbjct: 175 YVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGY--- 231
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL LF+ M ++ G+ P D T+V + S +GL+E G V M++ + +
Sbjct: 232 --GHQALDLFKKMTLE--GLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKL 287
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHG 299
G LVD+ + G L A M K N + W ++ +HG
Sbjct: 288 EHYG-CLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHG 333
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 203/376 (53%), Gaps = 28/376 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKR----------GFMFNVLVATTLIHFYASN 157
T + L +CA SL G +IH + K G +++V LI Y+
Sbjct: 258 TIISVLSACA---SLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 314
Query: 158 KDISSGKKVFDQMPM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ + + +FD +P+ R+ TW MI G+ +Q + D AL LF +M+ + GV P
Sbjct: 315 RSFKAARSIFDDIPLEERNVVTWTVMIGGH-AQYGDSND----ALKLFVEMISEPYGVAP 369
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T+ C+L + L + G +H Y+ + + F+ L++MYSKCG +D A
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 429
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M +K+ ++WT+M TG +HG+G+EA+ + D MR G P+ +TF + AC H G+
Sbjct: 430 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 489
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++GL FD+M + +G+ P +HY+ +DLL R G L++A+ + +P++P A++W +LL
Sbjct: 490 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 549
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
SAC VH +V L E L+++ E + +SNIYA+A RW DV +R
Sbjct: 550 SACRVHSNVELAEHALNKLVEMNAE--------NDGSYTLISNIYATAGRWKDVARIRHL 601
Query: 456 MKVKRVETEPGSSILQ 471
MK ++ PG S +Q
Sbjct: 602 MKKSGIKKRPGCSWVQ 617
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 23/253 (9%)
Query: 104 FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163
D FT L +C L + G H + GF NV + L+ Y+ +
Sbjct: 8 LDHFTLPHVLKACGE---LPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 64
Query: 164 KKVFDQMPMRS---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT-- 218
+FD++ R +WN++++ + S A+ AL LF M + V KPT+
Sbjct: 65 SMIFDEITQRGIDDVISWNSIVSAHVKSSN-----AWTALDLFSKMTLIVHE-KPTNERS 118
Query: 219 ---TMVCVLSVSSQLGLLEFGACVHGYMEK--TFYMPENDVFIGTALVDMYSKCGCLDNA 273
++V +L L + VHG + TF DVF+G AL+D Y+KCG ++NA
Sbjct: 119 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL----DVFVGNALIDAYAKCGLMENA 174
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F+ M K+V++W AM G + G A L +MR + + VT+T++ A
Sbjct: 175 VKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQR 234
Query: 334 GLVEEGLHLFDNM 346
G E L++F M
Sbjct: 235 GCSHEALNVFRQM 247
>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
Length = 526
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 206/370 (55%), Gaps = 21/370 (5%)
Query: 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161
L+FD A+ SCA S L G Q H GF+ N + ++L+ FY ++
Sbjct: 124 LSFDASVLSNAVSSCA---STRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELD 180
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+ KVF +MP+R+ +W A+I+G+ + D L R+ S +KP D T
Sbjct: 181 NAYKVFKEMPVRNVVSWTAIISGFAQDWQV--DMCLQLYCLMRN-----STLKPNDFTFT 233
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
+LS + G L G H + + ++ + I ALV MY KCG +++A IF M
Sbjct: 234 SLLSACTGSGALGQGRSAHCQIIEMGFVSY--LHIANALVSMYCKCGNVEDAFHIFENMV 291
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
K++++W +M G A HG + I L + M+ GVKP+A+TF + ++C HAG VE G +
Sbjct: 292 GKDIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFVEGGRN 351
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
F++M ++GV+P + HYSCIVDLLGRAG LEEA FI +P+ P+A++W SL+S+C +H
Sbjct: 352 YFNSM-VEYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVSSCRLH 410
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
G V +G + + L L+PE + V L+N+YAS W VRK MK +R+
Sbjct: 411 GSVWIGIQAAENTLLLEPEC--------AATHVQLANLYASVGFWDQAARVRKLMKDRRL 462
Query: 462 ETEPGSSILQ 471
+T PG S ++
Sbjct: 463 KTNPGCSWIE 472
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 254/470 (54%), Gaps = 36/470 (7%)
Query: 15 LKAITTPSHIK------QIHAQLITN-ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFT 67
L AI+ SH++ Q+HA +I N A+ + LI +Y + S KI F
Sbjct: 318 LSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKI----FD 373
Query: 68 HFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLST 124
+ ++ +NT+I D L+ Y + K L D T V AL S A L
Sbjct: 374 NMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVT-VTALLSAA--SDLRN 430
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM--PMRSSATWNAMI 182
+G+Q H ++ + G F + + LI YA + I + + VF++ R ATWN+M+
Sbjct: 431 PDIGKQTHGYLLRNGIQFEGM-DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMM 489
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
+GY A ++ R ML V P T+ +L + G +++G +HG+
Sbjct: 490 SGYTQNG-----LVDQAFLILRQMLDQ--KVMPNVVTLASILPACNPSGYIDWGKQLHGF 542
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+ + +VF+ TAL+DMYSK G + +A +FS+ EK+++T++ M G HG G
Sbjct: 543 SIRNDL--DQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGE 600
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
A+ + M+ G++P+AVT ++ +AC +AGLV+EGL +F++M++ + ++P +H+ C+
Sbjct: 601 SALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCV 660
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421
D+LGRAG +++AY F++G+ K + + +W SLL+AC +H LG+ V K LL+++
Sbjct: 661 ADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEK-- 718
Query: 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ + V LSNIYA W +V+ VRKQM+ + ++ E GSS ++
Sbjct: 719 ----INGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIE 764
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 174/406 (42%), Gaps = 43/406 (10%)
Query: 65 VFTHFDPPNLFLFNTLI---RCTPPQDSVLVFAYWV--SKGLLTFDDFTYVFALGSCARF 119
+F P+ L+NT+I C D L+F + S + D +TY L +CA
Sbjct: 50 LFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACA-- 107
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA------SNKDISSG-------KKV 166
L +G+ +H H + + +V +L++ Y+ + + SG +KV
Sbjct: 108 -DTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 166
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD M R+ WN +I Y + A+ A+ F M++ + G+KP+ + V V
Sbjct: 167 FDTMRKRTVVAWNTLIAWYVRTERYAE-----AVKQF-SMMMKI-GIKPSPVSFVNVFPA 219
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
S LG + VHG + K ND+++ ++ + MY++ GCL+ A +F E+N
Sbjct: 220 FSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTE 279
Query: 287 TWTAMATGMAIHGKGNEAIRL-LDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLF 343
W M + + E I+L ++ + VT S +A H E E LH F
Sbjct: 280 VWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAF 339
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
K + + ++ + R ++ ++ +P K D + W +++SA +G
Sbjct: 340 ---VIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK-DVVSWNTMISAFVQNG- 394
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
L ++ + +++ + VD + A S++ R PD+
Sbjct: 395 --LNDEALMLFYEMKKQDLMVDSVTVTALLSAASDL-----RNPDI 433
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 20/185 (10%)
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+++FD +P S+ WN +I G + AL+ + +M VK T
Sbjct: 47 ARQLFDALPRPSTVLWNTIIIGLV-----CNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 101
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL------------ 270
VL + L G VH + + P V+ +L++MYS C
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVY--NSLLNMYSMCSSTTPDGKMVSGYSR 159
Query: 271 -DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
D +F MR++ V+ W + + EA++ M G+KP+ V+F ++F A
Sbjct: 160 CDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA 219
Query: 330 CCHAG 334
G
Sbjct: 220 FSSLG 224
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/418 (33%), Positives = 219/418 (52%), Gaps = 25/418 (5%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFAL 113
S I +F D + +N++I + + ++L+F + +G+ + T + AL
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQP-TNVTVMGAL 239
Query: 114 GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR 173
+CA L L G+ +H V + +V V +LI Y+ K + +F + +
Sbjct: 240 HACA---DLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296
Query: 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
+ +WNAMI GY C AL F +M +KP TMV V+ ++L +
Sbjct: 297 TLVSWNAMILGYAQNG-----CVNEALNAFCEM--QSRNIKPDSFTMVSVIPALAELSIP 349
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMAT 293
+HG + + F + +VF+ TALVDMY+KCG + A +F M ++V+TW AM
Sbjct: 350 RQAKWIHGLVIRRFL--DKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMID 407
Query: 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353
G HG G ++ L M+ +KPN +TF +AC H+GLVEEGL F++MK +G+E
Sbjct: 408 GYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIE 467
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKI 413
P + HY +VDLLGRAG L +A++FI +PIKP ++ ++L AC +H +V LGEK
Sbjct: 468 PTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFE 527
Query: 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +L P+ V L+NIYA+A W V VR M+ ++ PG S+++
Sbjct: 528 IFKLNPD--------DGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVE 577
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 14/234 (5%)
Query: 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKK 165
+FTY+ L C S L G++IH V GF +N+ T +++ YA + I+
Sbjct: 32 NFTYLLKL--CG---DNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYN 86
Query: 166 VFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
+FD+MP R WN MI+GY F + L + + G +P T+V +L
Sbjct: 87 MFDRMPERDLVCWNTMISGYAQN-------GFAKVALMLVLRMSEEGHRPDSITIVSILP 139
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LL G VHGY+ + + E+ V + TALVDMYSKCG + A +IF M + V
Sbjct: 140 AVADTRLLRIGMAVHGYVLRAGF--ESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTV 197
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
++W +M G G A+ + M D GV+P VT AC G +E G
Sbjct: 198 VSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERG 251
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 16/235 (6%)
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
M+ GY S +AL F M D V+P +L + L+ G +H
Sbjct: 1 MLKGYAKSSSLD-----SALSFFSRMKHD--SVRPVVYNFTYLLKLCGDNSDLKRGKEIH 53
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
G + + + ++F T +V+MY+KC +++A +F RM E++++ W M +G A +G
Sbjct: 54 GSVITSGF--SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGF 111
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
A+ L+ M + G +P+++T S+ A L+ G+ + + + G E + +
Sbjct: 112 AKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVL-RAGFESLVNVST 170
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+VD+ + G + A G+ + + W S+ + G V G+ G +L+
Sbjct: 171 ALVDMYSKCGSVSIARVIFDGMDHRT-VVSWNSM-----IDGYVQSGDAEGAMLI 219
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 203/376 (53%), Gaps = 28/376 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKR----------GFMFNVLVATTLIHFYASN 157
T + L +CA SL G +IH + K G +++V LI Y+
Sbjct: 365 TIISVLSACA---SLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 421
Query: 158 KDISSGKKVFDQMPM--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215
+ + + +FD +P+ R+ TW MI G+ +Q + D AL LF +M+ + GV P
Sbjct: 422 RSFKAARSIFDDIPLEERNVVTWTVMIGGH-AQYGDSND----ALKLFVEMISEPYGVAP 476
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
T+ C+L + L + G +H Y+ + + F+ L++MYSKCG +D A
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 536
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F M +K+ ++WT+M TG +HG+G+EA+ + D MR G P+ +TF + AC H G+
Sbjct: 537 VFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 596
Query: 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLL 395
V++GL FD+M + +G+ P +HY+ +DLL R G L++A+ + +P++P A++W +LL
Sbjct: 597 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALL 656
Query: 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455
SAC VH +V L E L+++ E + +SNIYA+A RW DV +R
Sbjct: 657 SACRVHSNVELAEHALNKLVEMNAE--------NDGSYTLISNIYATAGRWKDVARIRHL 708
Query: 456 MKVKRVETEPGSSILQ 471
MK ++ PG S +Q
Sbjct: 709 MKKSGIKKRPGCSWVQ 724
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 133/302 (44%), Gaps = 26/302 (8%)
Query: 58 STKIVHFVFTHFDPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALG 114
+T V P +N LIR Q DS + + + + D FT L
Sbjct: 66 ATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLK 125
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+C L + G H + GF NV + L+ Y+ + +FD++ R
Sbjct: 126 ACGE---LPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 182
Query: 175 ---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT-----TMVCVLSV 226
+WN++++ + S A+ AL LF M + V KPT+ ++V +L
Sbjct: 183 IDDVISWNSIVSAHVKSSN-----AWTALDLFSKMTLIVHE-KPTNERSDIISIVNILPA 236
Query: 227 SSQLGLLEFGACVHGYMEK--TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
L + VHG + TF DVF+G AL+D Y+KCG ++NA+ +F+ M K+
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFL----DVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 292
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W AM G + G A L +MR + + VT+T++ A G E L++F
Sbjct: 293 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFR 352
Query: 345 NM 346
M
Sbjct: 353 QM 354
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
+GT +V Y CG D ALL+ R+ + W + G+ + AI + M G
Sbjct: 53 LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375
+ + T + AC G F + G E ++ + +V + R G LEEA
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171
Query: 376 YNFIMGIPIK--PDAILWRSLLSA 397
I + D I W S++SA
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSA 195
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 203/381 (53%), Gaps = 30/381 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM------------FNVLVATTLIH 152
+ T + L +CA SL L G +IH + K+ + +++V LI
Sbjct: 394 NSVTIISLLSACA---SLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALID 450
Query: 153 FYASNKDISSGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
Y+ + + + +FD +P R TW MI GY +Q + D AL +F +M+
Sbjct: 451 MYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGY-AQYGDSND----ALKIFSEMISKP 505
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
V P T+ C+L + L L G +H Y+ + + F+ L+DMYSKCG +
Sbjct: 506 YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDV 565
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
D A +F M ++N ++WT+M +G +HG+G EA+ + D M+ G P+ ++F L AC
Sbjct: 566 DTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC 625
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H+G+V++GL+ FD M+ + V +HY+C++DLL R G L++A+ I +P++P A++
Sbjct: 626 SHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVI 685
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450
W +LLSAC VH +V L E L+ ++ E + +SNIYA+A RW DV
Sbjct: 686 WVALLSACRVHSNVELAEYALNKLVNMKAE--------NDGSYTLISNIYANARRWKDVA 737
Query: 451 SVRKQMKVKRVETEPGSSILQ 471
+R+ MK ++ PG S +Q
Sbjct: 738 RIRQLMKKSGIKKRPGCSWVQ 758
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 118/258 (45%), Gaps = 18/258 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D FT +AL +C L + GR +H + GF NV V L+ Y+ +
Sbjct: 148 DHFTLPYALKACGE---LPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDAS 204
Query: 165 KVFDQMPMRS---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV----SGVKPTD 217
VFD++ + +WN+++ + S AL LF +M + V + +
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPR-----TALELFSEMSMIVHEKATNERSDI 259
Query: 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277
++V +L + L L +H Y + D F+ AL+D Y+KCG +++A+ +F
Sbjct: 260 ISIVNILPACASLKALPQIKEIHSYAIRNGTFA--DAFVCNALIDTYAKCGSMNDAVKVF 317
Query: 278 SRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337
+ M K+V++W AM TG G A L ++MR + + +T++++ A G +
Sbjct: 318 NVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQ 377
Query: 338 EGLHLFDNMKSKWGVEPH 355
E L F M G EP+
Sbjct: 378 EALDAFQQMILD-GSEPN 394
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 154/497 (30%), Positives = 251/497 (50%), Gaps = 50/497 (10%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTH 68
F L + + +++HA + + A L+++Y + + + VF
Sbjct: 51 FVLRAIGTMKLSVEGRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARR----VFDE 106
Query: 69 FDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
L L+N ++RC + + A + G T D T V A+ +C+R L+
Sbjct: 107 MPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLN-- 164
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LGR+IH ++ F F++ VA L+ Y N + K+F+QMP R+ +W +++GY
Sbjct: 165 -LGRRIHSYMDGV-FGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGY 222
Query: 186 --CSQSKKA---------KDCAF---------------NALVLFRDMLVDVSGVKPTDTT 219
Q KA KD AL+LFRDM + V+P T
Sbjct: 223 GIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDM--QLQRVEPDKFT 280
Query: 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279
+V +L+ + +G L+ G +H Y E + D +GTAL++MYSKCG +D +L IF R
Sbjct: 281 VVTLLTCCANIGALDQGEWIHQYAESRNM--KIDAVLGTALIEMYSKCGHVDKSLQIFGR 338
Query: 280 MREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
M+ K+ WTA+ G+A +G+ ++A+ L + M+ KP+ +TF + +ACCH GLV+EG
Sbjct: 339 MQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEG 398
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSAC 398
F MK + +EP I+HYSC+V+LLG AG L EA I +P+ D + L+ +LL+AC
Sbjct: 399 QRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLITDMPVNNDTMPLFGALLTAC 458
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
+G+V + E + K + D + + V +SN+YA+A RW + VR +M
Sbjct: 459 KANGNVEMSEWLTK-------RIAKEDCSPNPDVNVLMSNVYATASRWEEAIRVRSKMTN 511
Query: 459 KRVETEPGSSILQTTTH 475
V+ G S+++ +
Sbjct: 512 PAVKKTAGCSMIEVKEY 528
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 38/332 (11%)
Query: 78 NTLIRCTPPQDS---VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL---GRQI 131
N LIR + S V+ Y + L D +TY F L + + T+ L GR++
Sbjct: 15 NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRA------IGTMKLSVEGRKV 68
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
H K GF ++ A +L+ Y S ++VFD+MP R WN M+ Y +
Sbjct: 69 HAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGR- 127
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251
F A V + ++ G P T+V ++ S+ G L G +H YM+ F
Sbjct: 128 -----FTAAVAL-AVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGF-- 179
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ + AL+DMY+K G L+ A+ +F +M E+N+++WT + +G I G+ LD
Sbjct: 180 -SLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQ-------LDKA 231
Query: 312 R----DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
R C + + + +TS+ AC G EE L LF +M+ + VEP ++
Sbjct: 232 RVFFYQC-TQKDLILWTSMINACVQHGSFEEALILFRDMQLQ-RVEPDKFTVVTLLTCCA 289
Query: 368 RAGHLEEA---YNFIMGIPIKPDAILWRSLLS 396
G L++ + + +K DA+L +L+
Sbjct: 290 NIGALDQGEWIHQYAESRNMKIDAVLGTALIE 321
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 105/256 (41%), Gaps = 22/256 (8%)
Query: 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271
G+ T VL + L G VH KT + D + +L++MY+ G D
Sbjct: 41 GLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVKTGF--RWDAYTACSLMEMYTMLGRAD 98
Query: 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331
+A +F M ++ ++ W M G+ A+ L M G P+ VT + AC
Sbjct: 99 SARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACS 158
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
AG + G + M +G + + ++D+ + G+LEEA +P + + I W
Sbjct: 159 RAGDLNLGRRIHSYMDGVFGFSLPVAN--ALLDMYTKNGYLEEAVKMFEQMP-ERNIISW 215
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451
L+S + G QL F CT +D + +++ + + E
Sbjct: 216 TILVSGYGIAG-------------QLDKARVFF-YQCTQKDLILWTSMINACVQHGSFEE 261
Query: 452 ---VRKQMKVKRVETE 464
+ + M+++RVE +
Sbjct: 262 ALILFRDMQLQRVEPD 277
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 247/453 (54%), Gaps = 28/453 (6%)
Query: 25 KQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ+H+++I L + L+ +Y K A+ S VF N+ + +I
Sbjct: 76 KQLHSRVIRLGLALDVCVGCSLVDMY-AKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 134
Query: 84 TPP-----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
++++ +F +S G + + F++ L +C +LS + G Q++ + K
Sbjct: 135 YAQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACG---NLSDPYTGEQVYSYAVKL 190
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G V +LI YA + + +K FD + ++ ++NA+++GY K +
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE----- 245
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
A +LF + + +G+ + T +LS ++ +G + G +HG + K Y +++ I
Sbjct: 246 AFLLFNE--IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY--KSNQCICN 301
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
AL+ MYS+CG ++ A +F+ M ++NV++WT+M TG A HG A+ + M + G KP
Sbjct: 302 ALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 361
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
N +T+ ++ +AC H G++ EG F++M + G+ P ++HY+C+VDLLGR+G L EA F
Sbjct: 362 NEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEF 421
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +P+ DA++WR+LL AC VHG+ LG +++L+ +P+ D A ++ LSN
Sbjct: 422 INSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD----DPAA----YILLSN 473
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ASA +W DV +RK MK + + E G S ++
Sbjct: 474 LHASAGQWKDVVKIRKSMKERNLIKEAGCSWIE 506
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 23/334 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY---ASNKDIS 161
D FTY L +C L L LG+Q+H V + G +V V +L+ Y A++ +
Sbjct: 55 DRFTYSSVLSACTE---LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVD 111
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKPTDTTM 220
+KVF+QMP + +W A+I Y ++ +C A+ LF M +SG ++P +
Sbjct: 112 DSRKVFEQMPEHNVMSWTAIITAYA----QSGECDKEAIELFCKM---ISGHIRPNHFSF 164
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
VL L G V+ Y K N +G +L+ MY++ G +++A F +
Sbjct: 165 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVN--CVGNSLISMYARSGRMEDARKAFDIL 222
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
EKN++++ A+ G A + K EA L + + D G+ +A TF SL + G + +G
Sbjct: 223 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 282
Query: 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
+ + K G + + + ++ + R G++E A+ + + + I W S+++
Sbjct: 283 QIHGRLL-KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAK 340
Query: 401 HGDVALGEKVGKILLQ--LQP-EVTFVDV--ACT 429
HG ++ +L+ +P E+T+V V AC+
Sbjct: 341 HGFATRALEMFHKMLETGTKPNEITYVAVLSACS 374
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 133/294 (45%), Gaps = 56/294 (19%)
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KVFD+MP R+ TW MI + CA +A+ LF DM ++SG P T VL
Sbjct: 11 KVFDKMPERNLVTWTLMITRFAQLG-----CARDAIDLFLDM--ELSGYVPDRFTYSSVL 63
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC---GCLDNALLIFSRMR 281
S ++LGLL G +H + + DV +G +LVDMY+KC G +D++ +F +M
Sbjct: 64 SACTELGLLALGKQLHSRVIRLGLAL--DVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP 121
Query: 282 EKNVLTWTAMATGMAIHGK-GNEAIRLLDSMRDCGVKPNAVTFTSLFAAC---------- 330
E NV++WTA+ T A G+ EAI L M ++PN +F+S+ AC
Sbjct: 122 EHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGE 181
Query: 331 -------------------------CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
+G +E+ FD + E ++ Y+ IVD
Sbjct: 182 QVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL-----FEKNLVSYNAIVDG 236
Query: 366 LGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416
+ EEA +N I I A + SLLS G + GE++ LL+
Sbjct: 237 YAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK 290
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 44/213 (20%)
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332
A +F +M E+N++TWT M T A G +AI L M G P+ T++S+ +AC
Sbjct: 9 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68
Query: 333 AGLVEEGLHLFD------------------NMKSKWGV---------------EPHIKHY 359
GL+ G L +M +K E ++ +
Sbjct: 69 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128
Query: 360 SCIVDLLGRAGHLE----EAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+ I+ ++G + E + ++ I+P+ + S+L AC D GE+V +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448
+L V C +++ YA + R D
Sbjct: 189 KL----GIASVNCVGNSLISM---YARSGRMED 214
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 242/474 (51%), Gaps = 47/474 (9%)
Query: 25 KQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
++IH + N +++ + L+ +YC K P+ ++V F + ++N L+
Sbjct: 554 REIHCYALRNGDLIENSFVGTALVDMYCNCK-QPKKGRLV---FDGVVRRTVAVWNALLA 609
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
R ++ +F +S+ + T+ L +C R C + + G IH ++ KR
Sbjct: 610 GYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVR-CKVFSDKEG--IHGYIVKR 666
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF + V L+ Y+ + K +F +M R +WN MI G C + D A N
Sbjct: 667 GFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITG-CIVCGRYDD-ALN 724
Query: 199 ALVLFR--------DMLVDVS---GV--KPTDTTMVCVLSVSSQLGLLEFGACVHGY-ME 244
L + D VD GV KP T++ VL + L L G +H Y ++
Sbjct: 725 LLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVK 784
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ M DV +G+ALVDMY+KCGCL+ A +F +M +NV+TW + +HGKG EA
Sbjct: 785 QKLAM---DVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEA 841
Query: 305 IRLLDSMRDCG------VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+ L M G ++PN VT+ ++FAAC H+G+V+EGLHLF MK+ GVEP H
Sbjct: 842 LELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDH 901
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI-LWRSLLSACNVHGDVALGEKVGKILLQL 417
Y+C+VDLLGR+G ++EAY I +P + + W SLL AC +H V GE K L L
Sbjct: 902 YACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVL 961
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+P V + +V +SNIY+SA W VRK+MK V EPG S ++
Sbjct: 962 EPNV--------ASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIE 1007
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 144/297 (48%), Gaps = 18/297 (6%)
Query: 111 FALGSCARFCS--LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFD 168
F L S A CS + LG+Q+H + + G + L+ YA ++ K +F
Sbjct: 434 FTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL-RTYTNNALVTMYARLGRVNDAKALFG 492
Query: 169 QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+ +WN +I+ SQ+ + ++ AL+ M+VD GV+P T+ VL S
Sbjct: 493 VFDGKDLVSWNTVISS-LSQNDRFEE----ALMYVYLMIVD--GVRPDGVTLASVLPACS 545
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
QL L G +H Y + + EN F+GTALVDMY C L+F + + V W
Sbjct: 546 QLERLRIGREIHCYALRNGDLIENS-FVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVW 604
Query: 289 TAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAAC--CHAGLVEEGLHLFDN 345
A+ G A + ++A+RL M + PNA TF S+ AC C +EG+H +
Sbjct: 605 NALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGY-I 663
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+K +G + +++ + ++D+ R G +E + I G K D + W ++++ C V G
Sbjct: 664 VKRGFGKDKYVQ--NALMDMYSRMGRVEISKT-IFGRMNKRDIVSWNTMITGCIVCG 717
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 16/229 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM--FNVLVATTLIHFYASNKDISS 162
D+F + L + A ++ L LG+QIH HV K G +V VA +L++ Y D+++
Sbjct: 329 DNFAFPAVLKAAA---AVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTA 385
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
++VFD +P R +WN+MI C + +L LFR ML + V PT T+V
Sbjct: 386 ARQVFDDIPDRDHVSWNSMIATLCRFEEWEL-----SLHLFRLMLSE--NVDPTSFTLVS 438
Query: 223 VLSVSSQL-GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V S + G + G VH Y T + + ALV MY++ G +++A +F
Sbjct: 439 VAHACSHVRGGVRLGKQVHAY---TLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFD 495
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
K++++W + + ++ + + EA+ + M GV+P+ VT S+ AC
Sbjct: 496 GKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPAC 544
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 6/177 (3%)
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL ++ + L G +H ++ K + P + V + +LV+MY KCG L A +F + +
Sbjct: 336 VLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPD 395
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++ ++W +M + + ++ L M V P + T S+ AC H V G+ L
Sbjct: 396 RDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSH---VRGGVRL 452
Query: 343 FDNMKSKWGVEPHIKHYS--CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ + ++ Y+ +V + R G + +A + G+ D + W +++S+
Sbjct: 453 GKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDA-KALFGVFDGKDLVSWNTVISS 508
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 191/330 (57%), Gaps = 18/330 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+I YA + K +FDQMP R ++N+M+ GY AL +
Sbjct: 286 DVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYH-----MEALEI 340
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPENDVFIGTALV 261
F DM + S + P +TT+V VLS +QLG L +H Y+ EK F++ +G AL+
Sbjct: 341 FSDMEKE-SHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGK---LGVALI 396
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DMYSKCG + +A+L+F + K++ W AM G+AIHG G A +L + +KP+ +
Sbjct: 397 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDI 456
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + AC H+GLV+EGL F+ M+ K +EP ++HY C+VD+L R+G +E A N I
Sbjct: 457 TFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQE 516
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI+P+ ++WR+ L+ACN H + GE VGK L+ + +V LSN+YA
Sbjct: 517 MPIEPNDVIWRTFLTACNHHKEFETGELVGKHLI--------LQAGYNPSSYVLLSNMYA 568
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQ 471
S +W DV +R MK +++E PG S ++
Sbjct: 569 SFGKWKDVRRIRTMMKERKIEKIPGCSWIE 598
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 106/462 (22%), Positives = 203/462 (43%), Gaps = 64/462 (13%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF---------D 70
T + +IHA+LIT L + I L P + VF + +
Sbjct: 27 TSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHVCSSSPGGE 86
Query: 71 PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
+ FL+N +I+ P+ ++L+F + G+ + D F+ L +C+R L +
Sbjct: 87 VEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGV-SVDKFSMSLVLKACSR---LGFVK 142
Query: 127 LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC 186
G QIH + K G ++ + LI Y + +++FD+MP R S ++N+MI+GY
Sbjct: 143 GGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYV 202
Query: 187 SQS--KKAKDCAFNALVLFRDMLVD----VSGVKPTDTTMVCVLSVSSQL---GLLEFGA 237
+ + A++ F+ + L+ +SG T + ++ +++ L+ + +
Sbjct: 203 KRGLIESAREL-FDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNS 261
Query: 238 CVHGYME-------KTFY--MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+ GY++ K + MP DV ++D Y+K G + A +F +M ++V+++
Sbjct: 262 MIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSY 321
Query: 289 TAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEG--LHLFDN 345
+M G + EA+ + M ++ + P+ T + +A G + + +HL+
Sbjct: 322 NSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV 381
Query: 346 MKS-----KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
K K GV ++D+ + G ++ A GI K W +++ +
Sbjct: 382 EKQFFLGGKLGV--------ALIDMYSKCGSIQHAMLVFEGIENK-SIDHWNAMIGGLAI 432
Query: 401 HGDVALGEKVGKILLQLQ------PEVTFVDV--ACTSEDFV 434
HG LGE +LLQ++ ++TFV V AC+ V
Sbjct: 433 HG---LGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLV 471
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 153/497 (30%), Positives = 243/497 (48%), Gaps = 60/497 (12%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+H+KQ+ A L T YA + +CT S + +F H N LF +I
Sbjct: 20 NHLKQLQAYLTTLGHAHTHFYAFKLIRFCTLTLS--NLTYARLIFDHIPSLNTHLFTAMI 77
Query: 82 RC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
T P ++ +F + + + F + AL +C C+ +L H +
Sbjct: 78 TAYAAHPATHPS-ALSLFRHMLRSQPPRPNHFIFPHALKTCPESCAAESL------HAQI 130
Query: 136 TKRGFMFNVLVATTLIHFYAS-NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA-- 192
K GF +V T L+ Y+ + + + KKVFD+M RS ++ AM++G+
Sbjct: 131 VKSGFHEYPVVQTALVDSYSKVSGGLGNAKKVFDEMSDRSVVSFTAMVSGFARVGDVESA 190
Query: 193 ---------KDC-AFNALV--------------LFRDMLVDVSGVKPTDTTMVCVLSVSS 228
+D ++NAL+ LFR M+ + + +P T+VC LS
Sbjct: 191 VRVFGEMLDRDVPSWNALIAGCTQNGAFTQGIELFRRMVFECN--RPNGVTVVCALSACG 248
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
+G+L+ G +HGY+ K D F+ ALVDMY KCG L A +F EK + +W
Sbjct: 249 HMGMLQLGRWIHGYVYKNGLA--FDSFVLNALVDMYGKCGSLGKARKVFEMNPEKGLTSW 306
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCG--VKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
+M A+HG+ + AI + + M + G V+P+ VTF L AC H GLVE+G F+ M
Sbjct: 307 NSMINCFALHGQSDSAIAIFEQMVEGGGGVRPDEVTFVGLLNACTHGGLVEKGYWYFEMM 366
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
++G+EP I+HY C++DLLGRAG +EA + + G+ ++PD ++W SLL+ C VHG L
Sbjct: 367 VQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVVKGMSMEPDEVVWGSLLNGCKVHGRTDL 426
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
E K L+++ P + L+N+Y +W +V +V + +K ++ PG
Sbjct: 427 AEFAAKKLIEIDPH--------NGGYRIMLANVYGELGKWDEVRNVWRTLKQQKSYKVPG 478
Query: 467 SSIL----QTTTHYTLD 479
S + Q Y+LD
Sbjct: 479 CSWIEVDDQVHQFYSLD 495
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 201/356 (56%), Gaps = 23/356 (6%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
T VF++ CA+ L T G+++ + + NV+V T L+ Y + I ++
Sbjct: 254 ITSVFSI--CAKSGDLDT---GKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARRE 307
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+M R W+ MI GY + +L LF M + +P + T+V V+S
Sbjct: 308 FDRMSQRDVVAWSTMIAGYAQNGRP-----LESLELFERM--KATDCRPNEVTLVGVISA 360
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+QLG E + Y E +P ++G+AL+DMY++CG + A +FSRM +K V+
Sbjct: 361 CAQLGSDELVEQIGNYAENQ-RLPLTS-YLGSALIDMYTRCGHVGRARSVFSRMEQKGVI 418
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TW +M G+A++G +AI L + M + GV+PN +TF +L AAC HAGLV++G+ F+ M
Sbjct: 419 TWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 478
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K + V P ++H +CIVDLL ++G L EAY FI + ++P+A++W +LLS+C H DV L
Sbjct: 479 KREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVEL 538
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+ + LL ++P+ S +V LSNIYA A W D +R M+ K V+
Sbjct: 539 AKLASRKLLAMEPD--------NSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQ 586
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 165/348 (47%), Gaps = 58/348 (16%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--------------- 172
GRQ+H H RG + +V V T L+ FYA N D+ S VFD+MP+
Sbjct: 138 GRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSK 197
Query: 173 ----------------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
R+SA+WN+MI Y + + AL LF ML + G +P
Sbjct: 198 AGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFRE-----ALTLFDRMLSE--GARPN 250
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+ V S+ ++ G L+ G V + + +V + TAL++MY KC +D+A
Sbjct: 251 AITITSVFSICAKSGDLDTGKRVRDLIGEDDL---QNVIVHTALMEMYVKCRAIDDARRE 307
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-- 334
F RM +++V+ W+ M G A +G+ E++ L + M+ +PN VT + +AC G
Sbjct: 308 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSD 367
Query: 335 -LVEEGLHLFDNMKSKWGVEPHIKHY-SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
LVE+ + +N + P + S ++D+ R GH+ A + + K I W
Sbjct: 368 ELVEQIGNYAENQRL-----PLTSYLGSALIDMYTRCGHVGRARSVFSRMEQK-GVITWN 421
Query: 393 SLLSACNVHG----DVALGEKVGKILLQLQPEVTFVDV--ACTSEDFV 434
S++ ++G ++L EK+ + +Q E+TFV + ACT V
Sbjct: 422 SMIRGLAMNGFAEDAISLYEKMAENGVQPN-EITFVALLAACTHAGLV 468
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 233/452 (51%), Gaps = 30/452 (6%)
Query: 25 KQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
K+IH + + S + L+ +Y A S + +F N+ +N++I
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMY----AKCGSLETARQLFDGMLERNVVSWNSMIDA 311
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ P++++L+F + +G+ D + + AL +CA L L GR IH + G
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKP-TDVSVMGALHACA---DLGDLERGRFIHKLSVELG 367
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
NV V +LI Y K++ + +F ++ R+ +WNAMI G+ + +A
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGR-----PIDA 422
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L F M VKP T V V++ ++L + +HG + ++ + +VF+ TA
Sbjct: 423 LNYFSQMRSRT--VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCL--DKNVFVTTA 478
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMY+KCG + A LIF M E++V TW AM G HG G A+ L + M+ +KPN
Sbjct: 479 LVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPN 538
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF S+ +AC H+GLVE GL F MK + +E + HY +VDLLGRAG L EA++FI
Sbjct: 539 GVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFI 598
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
M +P+KP ++ ++L AC +H +V EK + L +L P+ V L+NI
Sbjct: 599 MQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPD--------DGGYHVLLANI 650
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
Y +A W V VR M + + PG S+++
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVE 682
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 166/336 (49%), Gaps = 26/336 (7%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHF 69
A L L+ ++ ++QI + N L + +L+ L+C + ++ + VF
Sbjct: 40 AALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAAR----VFEPI 95
Query: 70 DPPNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDD-----FTYVFALGSCARFCSLS 123
D L++T+++ D ++V + +DD + + + L C +
Sbjct: 96 DSKLNVLYHTMLKGFAKVSDLDKALQFFVR---MRYDDVEPVVYNFTYLLKVCG---DEA 149
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN 183
L +G++IH + K GF ++ T L + YA + ++ +KVFD+MP R +WN ++
Sbjct: 150 ELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVA 209
Query: 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243
GY SQ+ A+ AL + + M + +KP+ T+V VL S L L+ G +HGY
Sbjct: 210 GY-SQNGMAR----MALEMVKSMCEE--NLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262
Query: 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNE 303
++ + ++ V I TALVDMY+KCG L+ A +F M E+NV++W +M + E
Sbjct: 263 MRSGF--DSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKE 320
Query: 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
A+ + M D GVKP V+ AC G +E G
Sbjct: 321 AMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 22/383 (5%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV 146
++++L F + + + T D LG+C +L GR +H V K GF ++ V
Sbjct: 124 EEALLAFKKMIDEEV-TIDQHVLCSTLGACG---ALKACKFGRSVHSSVVKLGFESDIFV 179
Query: 147 ATTLIHFYASNKDISSGKKVFD-QMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
L Y+ D+ S VF R+ ++ +I+GY + K + V R
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEK--GLSVFVELRR 237
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
G++P + T ++ + LE G +H + K + + D F+ + LVDMY
Sbjct: 238 -----QGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINF--DEDPFVSSILVDMYG 290
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG L+ A+ F + + + W ++ + HG G +AI++ + M D GVKPNA+TF S
Sbjct: 291 KCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFIS 350
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
L C HAGLVEEGL F +M +GV P +HYSC++DLLGRAG L+EA FI +P +
Sbjct: 351 LLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFE 410
Query: 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445
P+A W S L AC +HGD +G+ + L++L+P+ S V LSNIYA+ +
Sbjct: 411 PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPK--------NSGALVLLSNIYANERQ 462
Query: 446 WPDVESVRKQMKVKRVETEPGSS 468
W DV SVR +M+ V+ PG S
Sbjct: 463 WEDVRSVRMRMRDGNVKKLPGYS 485
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 155/311 (49%), Gaps = 20/311 (6%)
Query: 111 FALGSCARFC-SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
FA S R C SL ++ +G+Q+H K G + V + L Y+ + KVF++
Sbjct: 42 FAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEE 101
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC-VLSVSS 228
MP + +W AMI+GY + + AL+ F+ M+ + + D ++C L
Sbjct: 102 MPCKDEVSWTAMIDGYSKIGEFEE-----ALLAFKKMIDEEVTI---DQHVLCSTLGACG 153
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVLT 287
L +FG VH + K + E+D+F+G AL DMYSK G +++A +F E +NV++
Sbjct: 154 ALKACKFGRSVHSSVVKLGF--ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVS 211
Query: 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN-M 346
+T + G + + + + +R G++PN TF+SL AC + +E+G L M
Sbjct: 212 YTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVM 271
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K + +P + S +VD+ G+ G LE+A I P I W SL+S HG L
Sbjct: 272 KINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQHG---L 325
Query: 407 GEKVGKILLQL 417
G+ KI ++
Sbjct: 326 GKDAIKIFERM 336
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 100/213 (46%), Gaps = 11/213 (5%)
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP R+ +W AMI+G SK ++ A+ F M + G PT + +
Sbjct: 1 MPQRNLVSWTAMISGLSQNSKFSE-----AIRTFCGMRI--CGEVPTQFAFSSAIRACAS 53
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG +E G +H K + +++F+G+ L DMYSKCG + +A +F M K+ ++WT
Sbjct: 54 LGSIEMGKQMHCLALK--FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWT 111
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AM G + G+ EA+ M D V + S AC + G + ++ K
Sbjct: 112 AMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV-VK 170
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
G E I + + D+ +AG +E A N + GI
Sbjct: 171 LGFESDIFVGNALTDMYSKAGDMESASN-VFGI 202
>gi|356509555|ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 542
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 230/429 (53%), Gaps = 23/429 (5%)
Query: 44 QLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLT 103
+ +QL+ K AS +K+ F F P + L+ T P + L FA
Sbjct: 8 EALQLHGQKDASRNLSKV--FSFAALSPFGDLNYARLLLSTNPSTTTLSFAPSPKPPTPP 65
Query: 104 FDDFTYVFALGSCARFCSLSTLW-LGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162
++ FT+ F L CA S L LG+Q+H +TK GF ++ + L+H Y+ D+
Sbjct: 66 YN-FTFPFLLKCCAP----SKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEFGDLVL 120
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+ +FD+MP R +W +MI+G + D A+ LF ML GV+ + T++
Sbjct: 121 ARSLFDRMPHRDVVSWTSMISGLVNH-----DLPVEAISLFERMLQ--CGVEVNEATVIS 173
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL + G L G VH +E+ + + TALVDMY+K GC+ +
Sbjct: 174 VLRARADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKSGCIVRKVFDDVVD-- 231
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
++V WTAM +G+A HG +AI + M GVKP+ T T++ AC +AGL+ EG L
Sbjct: 232 RDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREGFML 291
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
F +++ ++G++P I+H+ C+VDLL RAG L+EA +F+ +PI+PDA+LWR+L+ AC VHG
Sbjct: 292 FSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLWRTLIWACKVHG 351
Query: 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
D ++ +++ L+ + D S ++ SN+YAS +W + VR+ M K +
Sbjct: 352 D---DDRAERLMKHLEIQDMRAD---DSGSYILTSNVYASTGKWCNKAEVRELMNKKGLV 405
Query: 463 TEPGSSILQ 471
GSS ++
Sbjct: 406 KPLGSSRIE 414
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 206/370 (55%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H + GF N+ + LI Y ++ +
Sbjct: 234 DESTMVSVVSACAQSASIE---LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETAC 290
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+ + + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 291 GLFEGLSYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGESPNDVTMLSIL 343
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG +E G +H Y+ K N T+L+DMY+KCG ++ A +F + ++
Sbjct: 344 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 403
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ N A + MR ++P+ +TF L +AC H+G+++ G H+F
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR 463
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+MK + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC ++ +V
Sbjct: 464 SMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANV 523
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++P+ +V LSNIYA+A RW +V +R + K ++
Sbjct: 524 ELGESYAQNLIKIEPK--------NPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKV 575
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 576 PGCSSIEIDS 585
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 134/507 (26%), Positives = 221/507 (43%), Gaps = 92/507 (18%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79
T ++ IHAQ+I L + + +C VF PNL ++NT
Sbjct: 14 TLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNT 73
Query: 80 LIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ R + P ++ ++ +S GLL + +T+ F L SCA+ + G+QIH HV
Sbjct: 74 MFRGHALSSDPVSALYLYVCMISLGLLP-NCYTFPFLLKSCAKSKAFRE---GQQIHGHV 129
Query: 136 TKRGFMFNVLVATTLIHFYASN---------------KD----------------ISSGK 164
K G+ ++ V T+LI Y N +D I+S +
Sbjct: 130 LKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQ 189
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
K+FD++P++ +WNAMI+GY + AL LF++M+ + V+P ++TMV V+
Sbjct: 190 KMFDEIPIKDVVSWNAMISGYAETGNNKE-----ALELFKEMM--KTNVRPDESTMVSVV 242
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +Q +E G VH +++ + +++ I AL+D+Y KCG ++ A +F + K+
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGF--GSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 300
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LHL 342
V++W + G EA+ L M G PN VT S+ AC H G +E G +H+
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------------------- 382
+ N + K GV H + ++D+ + G +E A I
Sbjct: 361 YINKRLK-GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGR 419
Query: 383 --------------PIKPDAILWRSLLSACNVHGDVALGEKV-------GKILLQLQPEV 421
I+PD I + LLSAC+ G + LG + KI +L+
Sbjct: 420 ANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYG 479
Query: 422 TFVDVACTSEDFVALSNIYASAERWPD 448
+D+ S F + + E PD
Sbjct: 480 CMIDLLGHSGLFKEAEEMINTMEMEPD 506
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 201/356 (56%), Gaps = 23/356 (6%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
T VF++ CA+ L T G+++ + + NV+V T L+ Y + I ++
Sbjct: 205 ITSVFSI--CAKSGDLDT---GKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARRE 258
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD+M R W+ MI GY + +L LF M + +P + T+V V+S
Sbjct: 259 FDRMSQRDVVAWSTMIAGYAQNGRP-----LESLELFERM--KATDCRPNEVTLVGVISA 311
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL 286
+QLG E + Y E +P ++G+AL+DMY++CG + A +FSRM +K V+
Sbjct: 312 CAQLGSDELVEQIGNYAENQ-RLPLTS-YLGSALIDMYTRCGHVGRARSVFSRMEQKGVI 369
Query: 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346
TW +M G+A++G +AI L + M + GV+PN +TF +L AAC HAGLV++G+ F+ M
Sbjct: 370 TWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 429
Query: 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
K + V P ++H +CIVDLL ++G L EAY FI + ++P+A++W +LLS+C H DV L
Sbjct: 430 KREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVEL 489
Query: 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+ + LL ++P+ S +V LSNIYA A W D +R M+ K V+
Sbjct: 490 AKLASRKLLAMEPD--------NSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQ 537
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 164/348 (47%), Gaps = 58/348 (16%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--------------- 172
GRQ+H H RG + +V V T L+ FYA N D+ S FD+MP+
Sbjct: 89 GRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSK 148
Query: 173 ----------------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216
R+SA+WN+MI Y + + AL LF ML + G +P
Sbjct: 149 AGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFRE-----ALALFDRMLSE--GARPN 201
Query: 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276
T+ V S+ ++ G L+ G V + + +V + TAL++MY KC +D+A
Sbjct: 202 AITITSVFSICAKSGDLDTGKRVRDLIGEDDL---QNVIVHTALMEMYVKCRAIDDARRE 258
Query: 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-- 334
F RM +++V+ W+ M G A +G+ E++ L + M+ +PN VT + +AC G
Sbjct: 259 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSD 318
Query: 335 -LVEEGLHLFDNMKSKWGVEPHIKHY-SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWR 392
LVE+ + +N + P + S ++D+ R GH+ A + + K I W
Sbjct: 319 ELVEQIGNYAENQRL-----PLTSYLGSALIDMYTRCGHVGRARSVFSRMEQK-GVITWN 372
Query: 393 SLLSACNVHG----DVALGEKVGKILLQLQPEVTFVDV--ACTSEDFV 434
S++ ++G ++L EK+ + +Q E+TFV + ACT V
Sbjct: 373 SMIRGLAMNGFAEDAISLYEKMAENGVQPN-EITFVALLAACTHAGLV 419
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 235/479 (49%), Gaps = 28/479 (5%)
Query: 10 FALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTH 68
F L +++ P +Q+H + ++ P + LI +YC + K VF
Sbjct: 58 FILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARK----VFEE 113
Query: 69 FDPPNLFL---FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL 125
+P + L +N LI V AY + T V LG L
Sbjct: 114 -NPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYL 172
Query: 126 WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
WLGR +H K G V V + I Y + +G+++FD+MP++ TWNA+I+GY
Sbjct: 173 WLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGY 232
Query: 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245
A++ L L+ M SGV P T+V VLS + LG + G V +E
Sbjct: 233 SQNG-----LAYDVLELYEQM--KSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVES 285
Query: 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305
++P +VF+ A + MY++CG L A +F M K++++WTAM +HG G +
Sbjct: 286 NGFVP--NVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGL 343
Query: 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
L D M G++P+ F + +AC H+GL ++GL LF MK ++ +EP +HYSC+VDL
Sbjct: 344 MLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDL 403
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425
LGRAG L+EA FI +P++PD +W +LL AC +H +V + E +++ +P
Sbjct: 404 LGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGY- 462
Query: 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ--TTTHYTLDGFR 482
+V +SNIY+ ++ + +R M+ + +PG S ++ H L G R
Sbjct: 463 -------YVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDR 514
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 211/398 (53%), Gaps = 48/398 (12%)
Query: 88 DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147
+++L+F + G+ D FT V L + ++ C+L LGR +H+++ G + +V
Sbjct: 221 EAILLFQEMLQLGV-EADVFTLVSLLSASSKHCNLD---LGRFVHLYIVITGVEIDSIVT 276
Query: 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
LI YA + K VFDQM + +W +M+N Y +Q NA+ +F M
Sbjct: 277 NALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQG-----LVENAVQIFNHMP 331
Query: 208 VD-----------------------------VSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
V +SGV P D T+V +LS S G L G
Sbjct: 332 VKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQ 391
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
H Y+ V + +L+DMY+KCG L A+ IF M EKNV++W + +A+H
Sbjct: 392 AHCYICDNIITVS--VTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALH 449
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G G EAI + SM+ G+ P+ +TFT L +AC H+GLV+ G + FD M S + + P ++H
Sbjct: 450 GFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEH 509
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y+C+VDLLGR G L EA I +P+KPD ++W +LL AC ++G++ + +++ K LL+L
Sbjct: 510 YACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELG 569
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456
S +V LSN+Y+ ++RW D++ +RK M
Sbjct: 570 --------RFNSGLYVLLSNMYSESQRWDDMKKIRKIM 599
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 129/486 (26%), Positives = 218/486 (44%), Gaps = 73/486 (15%)
Query: 2 LSLPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKI 61
L P H+ L L ++ +K +HAQ+I + L + + + C ++ +
Sbjct: 34 LKSPTHQTLHHL-LDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGD---LRY 89
Query: 62 VHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117
H +F PN F++N LIR P S+L+F VS G + + FT+ F L +CA
Sbjct: 90 AHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMP-NQFTFPFVLKACA 148
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
+ W +H K G + V ++ Y + + I S ++VFD + R+ +
Sbjct: 149 ---AKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVS 205
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN+MI GY K C A++LF++ML GV+ T+V +LS SS+ L+ G
Sbjct: 206 WNSMIAGY----SKMGFCD-EAILLFQEMLQ--LGVEADVFTLVSLLSASSKHCNLDLGR 258
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL--------------------------- 270
VH Y+ T E D + AL+DMY+KCG L
Sbjct: 259 FVHLYIVITGV--EIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYAN 316
Query: 271 ----DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
+NA+ IF+ M KNV++W ++ + G+ EA+ L M GV P+ T S+
Sbjct: 317 QGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSI 376
Query: 327 FAACCHAGLVEEG----LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ C + G + G ++ DN+ + + + ++D+ + G L+ A + G+
Sbjct: 377 LSCCSNTGDLALGKQAHCYICDNI-----ITVSVTLCNSLIDMYAKCGALQTAIDIFFGM 431
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP------EVTFVDV--ACTSEDFV 434
P K + + W ++ A +HG GE+ ++ +Q E+TF + AC+ V
Sbjct: 432 PEK-NVVSWNVIIGALALHG---FGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLV 487
Query: 435 ALSNIY 440
+ Y
Sbjct: 488 DMGRYY 493
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 113/256 (44%), Gaps = 17/256 (6%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
+F H N+ +N++I C + ++V +F G++ DD T V L C+
Sbjct: 326 IFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMP-DDATLVSILSCCSNTG 384
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L+ LG+Q H ++ +V + +LI YA + + +F MP ++ +WN
Sbjct: 385 DLA---LGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNV 441
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I + A+ +F+ M SG+ P + T +LS S GL++ G
Sbjct: 442 IIGALALHGFGEE-----AIEMFKSM--QASGLYPDEITFTGLLSACSHSGLVDMGRYYF 494
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMAIHG 299
M TF + V +VD+ + G L A+ + +M K +V+ W A+ I+G
Sbjct: 495 DIMISTFRISPG-VEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYG 553
Query: 300 KGNEAIRLLDSMRDCG 315
A +++ + + G
Sbjct: 554 NLEIAKQIMKQLLELG 569
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 246/489 (50%), Gaps = 52/489 (10%)
Query: 14 KLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKA---SPQSTKIVHFVFTHF 69
KL + IKQIH ++ L +S + +LI+ TK P +++ V F
Sbjct: 56 KLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRT-LTKLGVPMDPYPRRVIEPV--QF 112
Query: 70 DPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P FL+ +IR + D + + K +T FT+ L +C S+ L
Sbjct: 113 RNP--FLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG---SMGDLN 167
Query: 127 LGRQIHVHVTK-RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LGRQ H + RGF F V V T+I Y I +KVFD+MP R +W +I Y
Sbjct: 168 LGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAY 226
Query: 186 CS-----------QSKKAKD-CAFNALVL-------------FRDMLVDVSGVKPTDTTM 220
+S KD A+ A+V + D + + SG++ + T+
Sbjct: 227 ARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRM-EKSGIRADEVTV 285
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
+S +QLG ++ +K+ Y P + V IG+AL+DMYSKCG ++ A+ +F M
Sbjct: 286 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSM 345
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEG 339
KNV ++++M G+A HG+ EA+ L M +KPN VTF AC H+GLV++G
Sbjct: 346 NNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQG 405
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+F +M +GVEP HY+C+VDLLGRAG L+EA I + ++P +W +LL AC
Sbjct: 406 RQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACR 465
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H + + E + L +L+P++ +++ LSN+Y+SA W V SVRK +K K
Sbjct: 466 IHNNPDIAEIAAEHLFELEPDII--------GNYILLSNVYSSAGDWGGVLSVRKLIKEK 517
Query: 460 RVETEPGSS 468
++ P S
Sbjct: 518 GLKKTPAVS 526
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 194/322 (60%), Gaps = 17/322 (5%)
Query: 150 LIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209
L+ Y+ + +++S +VF+ M RS +W +MI GY + + ++ LF +M +
Sbjct: 265 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREG-----LSDMSVRLFHEM--E 317
Query: 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269
+ P TM C+L + L LE G +HG++ + + D + ALVDMY KCG
Sbjct: 318 KEDLFPNSITMACILPACASLAALERGQEIHGHILRNGF--SLDRHVANALVDMYLKCGA 375
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
L A L+F + EK++++WT M G +HG G+EAI + MR+ G++P+ V+F S+ A
Sbjct: 376 LGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYA 435
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C H+GL++EG F+ M++ +EP +HY+CIVDLL RAG+L +AY FI +PI+PDA
Sbjct: 436 CSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDAT 495
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W +LL C ++ DV L EKV + + +L+PE T +V L+NIYA AE+W +V
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGY--------YVLLANIYAEAEKWEEV 547
Query: 450 ESVRKQMKVKRVETEPGSSILQ 471
+ +R+++ + + PG S ++
Sbjct: 548 KKLRERIGRRGLRKNPGCSWIE 569
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 148/318 (46%), Gaps = 38/318 (11%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TY L CA L ++ GR+IH + + ++ + L+ Y + D+ G+++F
Sbjct: 103 TYCSVLQLCA---DLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIF 159
Query: 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
D++ WN ++NGY AK F +L LF+ M G++ ++ +
Sbjct: 160 DKVANEKVFLWNLLMNGY------AKIGNFRESLSLFKRM--RELGIRRVESARKLFDEL 211
Query: 227 SSQLGLLEFGACVHGYM-----EKTFYMPENDVFIG----------------TALVDMYS 265
+ ++ + + + GY+ EK + E + +G L+DMYS
Sbjct: 212 GDR-DVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYS 270
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
K G L++A+ +F M E++V++WT+M G A G + ++RL M + PN++T
Sbjct: 271 KSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMAC 330
Query: 326 LFAACCHAGLVEEGLHLFDN-MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ AC +E G + + +++ + ++ H+ + +VD+ + G L A IP
Sbjct: 331 ILPACASLAALERGQEIHGHILRNGFSLDRHVA--NALVDMYLKCGALGLARLLFDMIPE 388
Query: 385 KPDAILWRSLLSACNVHG 402
K D + W +++ +HG
Sbjct: 389 K-DLVSWTVMIAGYGMHG 405
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 14/196 (7%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+ T L +CA SL+ L G++IH H+ + GF + VA L+ Y + +
Sbjct: 324 NSITMACILPACA---SLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 380
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+FD +P + +W MI GY ++ A+ F +M SG++P + + + +L
Sbjct: 381 LLFDMIPEKDLVSWTVMIAGYGMHGYGSE-----AIAAFNEM--RNSGIEPDEVSFISIL 433
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMR-E 282
S GLL+ G M + P+++ + +VD+ ++ G L A M E
Sbjct: 434 YACSHSGLLDEGWGFFNMMRNNCCIEPKSEHY--ACIVDLLARAGNLSKAYKFIKMMPIE 491
Query: 283 KNVLTWTAMATGMAIH 298
+ W A+ G I+
Sbjct: 492 PDATIWGALLCGCRIY 507
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 220/390 (56%), Gaps = 35/390 (8%)
Query: 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCA-RFCSLSTLWLGRQIHVHVTKRGFMFNVL 145
++++ +F V+ G+ D+ T+V + +C+ R L R +H ++ N
Sbjct: 242 EEALRLFDEMVNAGIEP-DETTWVTVISACSSRGDPCLAASLVRTLH----QKRIQLNCF 296
Query: 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
V T L+ YA D+ S +K+F+ MP R+ TWN+MI GY + A A+ LF++
Sbjct: 297 VRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAM-----AIELFKE 351
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG----TALV 261
M+ + P + TMV V+S LG LE G V ++ EN + + A++
Sbjct: 352 MIT-AKKLTPDEVTMVSVISACGHLGALELGNWV------VRFLTENQIKLSISGHNAMI 404
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
MYS+CG +++A +F M ++V+++ + +G A HG G EAI L+ +M++ G++P+ V
Sbjct: 405 FMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV 464
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF + AC HAGL+EEG +F+++K +P I HY+C+VDLLGR G LE+A +
Sbjct: 465 TFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMER 519
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+P++P A ++ SLL+A +H V LGE L +L+P+ S +F+ LSNIYA
Sbjct: 520 MPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPD--------NSGNFILLSNIYA 571
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQ 471
SA RW DVE +R+ MK V+ G S ++
Sbjct: 572 SAGRWKDVERIREAMKKGGVKKTTGWSWVE 601
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 125/465 (26%), Positives = 205/465 (44%), Gaps = 97/465 (20%)
Query: 12 LLKLKAITTP----SHIKQIHAQLITNALKSPPLYAQLIQLYCTK-KASPQSTKIVHFVF 66
+L+L +I + +H++Q+HAQ+I N+L + L+ +CT+ +A P T H +F
Sbjct: 1 MLELGSIASRVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYT---HLLF 57
Query: 67 THFDPPNLFLFNTLIR-CTPPQD-SVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLS 123
PN+F+F +++R + QD + +V Y +G + D F Y + S
Sbjct: 58 NSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG---- 113
Query: 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAM 181
G H HV K G + V +I YA I +KVFD++P R A WNAM
Sbjct: 114 ----GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAM 169
Query: 182 INGYCSQSKKAK------------------------------------DC---------- 195
++GY + + DC
Sbjct: 170 VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 229
Query: 196 -----------AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
A AL LF +M+ +G++P +TT V V+S S G C+ +
Sbjct: 230 AMLSGYAQNGLAEEALRLFDEMV--NAGIEPDETTWVTVISACSSRG----DPCLAASLV 283
Query: 245 KTFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
+T + + + F+ TAL+DMY+K G LD+A +F+ M +NV+TW +M G A +G+
Sbjct: 284 RTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSA 343
Query: 303 EAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK---- 357
AI L M + P+ VT S+ +AC H G +E G N ++ E IK
Sbjct: 344 MAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-----NWVVRFLTENQIKLSIS 398
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++ ++ + R G +E+A + + D + + +L+S HG
Sbjct: 399 GHNAMIFMYSRCGSMEDAKRVFQEMATR-DVVSYNTLISGFAAHG 442
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 19/354 (5%)
Query: 111 FALGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
F L S C L LG+Q+ K G N+ V + ++ Y + + F++
Sbjct: 282 FTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEE 341
Query: 170 MPMRSSATWNAMINGYCSQSKKAKD------CAFNALVLFRDMLVDVSGVKPTDTTMVCV 223
M S TWNAMI+GY + AKD F AL +FR++ S +KP T +
Sbjct: 342 MDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNL--KRSAMKPDLFTFSSI 399
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LSV S + LE G +H KT ++ +DV + +ALV+MY+KCGC+++A F M +
Sbjct: 400 LSVCSSMMALEQGEQIHAQTIKTGFL--SDVVVNSALVNMYNKCGCIEDATKAFVEMSIR 457
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
++TWT+M +G + HG+ EAI+L + MR GV+PN +TF + +AC +AGL E+ H F
Sbjct: 458 TLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYF 517
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
D MK ++ +EP + HY C+VD+ R G L++A+ FI +P+ +W SL++ C HG+
Sbjct: 518 DMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGN 577
Query: 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457
+ L L++L+P+ E +V L N+Y S ERW DV VRK MK
Sbjct: 578 MELAFYAADRLIELRPKGI--------ETYVLLLNMYISNERWHDVARVRKLMK 623
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 138/300 (46%), Gaps = 23/300 (7%)
Query: 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162
T YV L C SL R +H H+ K G ++ VAT+L++ Y
Sbjct: 75 TVQSAMYVPLLHVCVETGSLGG---ARALHGHMVKTGTSADMFVATSLVNAYMRCGASQD 131
Query: 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
+ +FDQMP ++ TW A+I GY S+ AL +F +ML +G P+ T+
Sbjct: 132 ARSLFDQMPEKNVVTWTALITGYTVNSQ-----LLEALEVFVEML--EAGRYPSHYTLGA 184
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
+L+ S + G+ VHGY K Y + IG +L MY+K G L++A+ F + +
Sbjct: 185 MLNACSASNNADLGSQVHGYTIK--YRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPD 242
Query: 283 KNVLTWTAMATGMAIHGKGNE--AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
KNV+TWT M + A E LD + D GV PN T TS+ + C L
Sbjct: 243 KNVITWTTMISACAEDENYTELGLTLFLDMLMD-GVLPNEFTLTSVMSLCG----TRLDL 297
Query: 341 HLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+L +++ K G + +I + + L R G +EA F + I W +++S
Sbjct: 298 NLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMD-DVSIITWNAMISG 356
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 6/179 (3%)
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
V +L V + G L +HG+M KT D+F+ T+LV+ Y +CG +A +F +M
Sbjct: 82 VPLLHVCVETGSLGGARALHGHMVKTG--TSADMFVATSLVNAYMRCGASQDARSLFDQM 139
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340
EKNV+TWTA+ TG ++ + EA+ + M + G P+ T ++ AC + + G
Sbjct: 140 PEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGS 199
Query: 341 HLFD-NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ +K + I + C + ++G LE A +P K + I W +++SAC
Sbjct: 200 QVHGYTIKYRALSITSIGNSLC--RMYAKSGSLESAMRAFRMVPDK-NVITWTTMISAC 255
>gi|212722054|ref|NP_001132129.1| uncharacterized protein LOC100193546 [Zea mays]
gi|194693506|gb|ACF80837.1| unknown [Zea mays]
gi|413926460|gb|AFW66392.1| hypothetical protein ZEAMMB73_680096 [Zea mays]
Length = 473
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/393 (33%), Positives = 228/393 (58%), Gaps = 25/393 (6%)
Query: 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF 140
IR +PP+ ++ +F S+G+ T D +T + +C S S L + +H + G+
Sbjct: 94 IRASPPRLALRLFDEMRSRGVPT-DPYTLPLLISAC----SCSGFTLCQSLHGQGFRLGY 148
Query: 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200
+V T L++ Y +++ +VF++MP++ W +M++GY K A+
Sbjct: 149 NCHVFTQTALLNAYLKCGSVATACRVFEEMPVKDVVAWTSMVSGYVDSRMYLK-----AV 203
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+F +M V P + T+V + + + LG LE +H Y+EK E+++ + AL
Sbjct: 204 EVFNEMRGADDLVWPNEATVVSLATACAGLGSLEHAKGLHSYVEKAGL--EDELIVRNAL 261
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMY KCGC+++A +F MREK++ +WT M +G++ HG+G EA+ L SM + GV P++
Sbjct: 262 VDMYGKCGCIESAHRLFCLMREKDLHSWTTMISGLSSHGRGEEAVGLFFSMCEEGVLPDS 321
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
TF + +AC HAGLV+EG+H+F++M+S+ V KHY C+VDL RAG + AY FI
Sbjct: 322 TTFIVVLSACSHAGLVDEGIHIFNSMESEHNVPRDTKHYGCMVDLFSRAGLVRRAYEFIS 381
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED--FVALSN 438
+P +P+ + +LLSAC+++ ++ +GE V + +D+ C+ + V LSN
Sbjct: 382 MMPFEPNLEILGALLSACSINNELEIGELV----------LNKIDMVCSYKGGAGVLLSN 431
Query: 439 IYASAERWPDVESVRKQMKVKR-VETEPGSSIL 470
IYA+ W +V+++R++++ + V PG S++
Sbjct: 432 IYANQNLWHEVDTIRRKIRTEAIVRKPPGHSLI 464
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 224/447 (50%), Gaps = 59/447 (13%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF N+ +N+LI C P +++++F ++ G D+ T + +CA
Sbjct: 208 VFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFP-DEVTLSSVMSACA--- 263
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLV--------------------------------AT 148
L+ GRQ+H H+ KR + + +V T
Sbjct: 264 GLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSET 323
Query: 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV 208
+++ YA + ++ + VF QM ++ WN +I Y ++ + A+ LF +
Sbjct: 324 SILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEE-----AIRLFVQLKR 378
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMY 264
D + PT T VL+ + +L+ G H ++ K + PE+DVF+G +LVDMY
Sbjct: 379 D--SIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMY 436
Query: 265 SKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324
K G +D+ +F RM ++ ++W AM G A +G+ +A+ L + M P++VT
Sbjct: 437 LKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMI 496
Query: 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI 384
+ +AC H+GLV+EG F M G+ P HY+C+VDLLGRAGHL+EA I +P
Sbjct: 497 GVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPT 556
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+PD++LW SLL AC +H +V LGE+ L +L PE S +V LSN+YA
Sbjct: 557 EPDSVLWASLLGACRLHKNVELGERTAGRLFELDPE--------NSGPYVLLSNMYAEMG 608
Query: 445 RWPDVESVRKQMKVKRVETEPGSSILQ 471
+W DV VR+ MK + V +PG S ++
Sbjct: 609 KWADVFRVRRSMKDRGVSKQPGCSWIE 635
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 149/325 (45%), Gaps = 48/325 (14%)
Query: 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166
+++ AL +CA L T G Q+H V + +V + T L+ YA + ++V
Sbjct: 152 YSFASALSACAAEKDLRT---GEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRV 208
Query: 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226
FD MP R+ +WN++I Y + ALVLF +M+ +G P + T+ V+S
Sbjct: 209 FDAMPERNVVSWNSLITCYEQNGPVGE-----ALVLFVEMM--ATGFFPDEVTLSSVMSA 261
Query: 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG------CL---------- 270
+ L G VH +M K + +D+ + ALVDMY+KCG C+
Sbjct: 262 CAGLAAEREGRQVHAHMVKRDRL-RDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVV 320
Query: 271 ---------------DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315
++A ++FS+M EKNV+ W + A +G+ EAIRL ++
Sbjct: 321 SETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDS 380
Query: 316 VKPNAVTFTSLFAACCHAGLVEEGLH-----LFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
+ P T+ ++ AC + +++ G L + + +G E + + +VD+ + G
Sbjct: 381 IWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLL 395
+++ + + D + W +++
Sbjct: 441 SIDDGAKVFERMAAR-DNVSWNAMI 464
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 128/277 (46%), Gaps = 33/277 (11%)
Query: 135 VTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK- 193
V F+ N LV+T YA + ++VFD +P+R++ ++NA+++ Y + +
Sbjct: 48 VAGETFLLNTLVST-----YARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEA 102
Query: 194 -----------DCAFNALV--LFR-------DMLVDVSGVKPTD-----TTMVCVLSVSS 228
C++NA+V L R D L ++ + D + LS +
Sbjct: 103 RALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACA 162
Query: 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTW 288
L G VHG + ++ + +DV IGTALVDMY+KC +A +F M E+NV++W
Sbjct: 163 AEKDLRTGEQVHGLVARSPHA--DDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSW 220
Query: 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
++ T +G EA+ L M G P+ VT +S+ +AC EG + +M
Sbjct: 221 NSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVK 280
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385
+ + + + +VD+ + G EA +P +
Sbjct: 281 RDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR 317
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/515 (30%), Positives = 251/515 (48%), Gaps = 78/515 (15%)
Query: 20 TPSHIKQIHAQLI--TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T +K IHA+L+ ++ S + +L++LY A T H VF PN +L+
Sbjct: 14 TLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGA----TDYAHKVFDEITQPNAYLW 69
Query: 78 NTLI------RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW----- 126
+LI R S+ + +L F + + AL RF ++
Sbjct: 70 TSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFAFD 129
Query: 127 ----------------LGRQIHVHVTKRGF----MFNVLVATTLIHFYASNKDISSGKKV 166
G V + ++ F NV+ T++I Y D++ + +
Sbjct: 130 EMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVL 189
Query: 167 FDQMPMRSSATWNAMINGY--CSQSKKAKDCAFN-------------------------A 199
FD MP++ A+WN M++GY C F+ A
Sbjct: 190 FDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKA 249
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG-ACVHGYMEKTFYMPENDVFIGT 258
L LF +KP +T ++ ++S SQLG+++ + +H Y+ + +D+ + T
Sbjct: 250 LELFERF--KEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLL---SDLRVFT 304
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318
+L+DMY+KCG ++ AL +F K++L ++ M +A HG G +AI L D M+ +KP
Sbjct: 305 SLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKP 364
Query: 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378
++VTF + AC H GLV+EG F M ++G++P KHY+C+VDLLGR G LEEAYN
Sbjct: 365 DSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNL 424
Query: 379 IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438
I +PI P +++W +LL+AC VH +V L E L +++P+ S +++ LSN
Sbjct: 425 IRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPD--------NSGNYILLSN 476
Query: 439 IYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
IYA+A RW V VR +++ RV GSS ++ +
Sbjct: 477 IYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 511
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 122/300 (40%), Gaps = 27/300 (9%)
Query: 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRS 174
+C SL ++ I V F+ N L+ Y+ KVFD++ +
Sbjct: 11 NCKTLKSLKSIHARLLIESSVASSEFVIN-----KLLRLYSRFGATDYAHKVFDEITQPN 65
Query: 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234
+ W ++I+GY + D AF+ + R + V + T+ VL ++L +
Sbjct: 66 AYLWTSLIHGYVEN--RQYDEAFSLFIQMRREPISV-----LNFTISSVLKALARLTRFK 118
Query: 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG 294
G V+G+ M E D+ ++ Y +D A F RM E+NV++WT+M G
Sbjct: 119 GGQAVYGFAFDE--MCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICG 176
Query: 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH-LFDNMKSKWGVE 353
G EA L DSM VK + ++ + + G G LFD M K
Sbjct: 177 YVKAGDMAEAQVLFDSM---PVK-DLASWNVMVSGYMDIGDYTNGARCLFDQMPMK---- 228
Query: 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGEKV 410
++ +S ++ R G +A IKPD ++SAC+ G + E +
Sbjct: 229 -NLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESI 287
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 21/363 (5%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
+++T L +C C + TL LG QIH K G+ ++L+ ++++ Y + +
Sbjct: 265 NEYTLTSVLSAC---CVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQ 321
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKD------CAFNALVLFRDMLVDVSGVKPTDT 218
K+F+ M + TWNAMI G+ A+D AL +F+ + SG+KP
Sbjct: 322 KLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYR--SGMKPDLF 379
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T VLSV S L LE G +HG + K+ + DV +GTALV MY+KCG +D A F
Sbjct: 380 TFSSVLSVCSNLVALEQGEQIHGQIIKSGVLA--DVVVGTALVSMYNKCGSIDKASKAFL 437
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M + +++WT+M TG A HG +A++L + MR G+KPN VTF + +AC HAGL +E
Sbjct: 438 EMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADE 497
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
L+ F+ M+ ++ ++P + H++C++D+ R G +EEA++ + + +P+ +W L++ C
Sbjct: 498 ALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGC 557
Query: 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458
HG LG + LL+L+P+ DV E +V+L N++ SA RW DV VRK MK
Sbjct: 558 RSHGKSDLGFYAAEQLLKLKPK----DV----ETYVSLLNMHISAGRWKDVSKVRKLMKE 609
Query: 459 KRV 461
++V
Sbjct: 610 EKV 612
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 11/270 (4%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
R IH H+ K GF ++ V T L++ Y+ + S KVFD +P R+ W ++ GY
Sbjct: 83 ARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 142
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S AL LF ML +G P++ T+ VL+ S L +EFG VH Y+ K
Sbjct: 143 NSH-----PLLALQLFIKMLE--AGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIK-- 193
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y + D IG +L YSK L+ A+ F ++EK+V++WT++ + +G+ ++
Sbjct: 194 YHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSF 253
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
M G+KPN T TS+ +ACC ++ G + ++ K G I + I+ L
Sbjct: 254 FMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQI-HSLSIKLGYGSSILIKNSIMYLYL 312
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+ G L EA G+ + + W ++++
Sbjct: 313 KCGWLIEAQKLFEGMET-LNLVTWNAMIAG 341
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 182/387 (47%), Gaps = 35/387 (9%)
Query: 63 HFVFTHFDPPNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
H VF + N+ + TL ++ + P ++ +F + G ++T L +C+
Sbjct: 119 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYP-SNYTLGIVLNACS- 176
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
SL ++ G+Q+H ++ K F+ + +L FY+ + + K F + + +W
Sbjct: 177 --SLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISW 234
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
++I+ C + A+ +F F DML D G+KP + T+ VLS + L+ GA
Sbjct: 235 TSVISSCCDNGQAARSLSF-----FMDMLSD--GMKPNEYTLTSVLSACCVMLTLDLGAQ 287
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATG---- 294
+H K Y + + I +++ +Y KCG L A +F M N++TW AM G
Sbjct: 288 IHSLSIKLGY--GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKM 345
Query: 295 -------MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347
+A H G+ A+ + + G+KP+ TF+S+ + C + +E+G + +
Sbjct: 346 MDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQI- 404
Query: 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG--DVA 405
K GV + + +V + + G +++A + +P + I W S+++ HG A
Sbjct: 405 IKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRT-MISWTSMITGFARHGLSQQA 463
Query: 406 LGEKVGKILLQLQP-EVTFVDV--ACT 429
L L+ ++P +VTFV V AC+
Sbjct: 464 LQLFEDMRLVGIKPNQVTFVGVLSACS 490
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 203/353 (57%), Gaps = 17/353 (4%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F + + G +H + K GF +V V ++LI YA+ + KVFD + W
Sbjct: 180 FAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLW 239
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
N+M+ GY +Q+ ++ AL +FR ML +GV+P T ++ L LL G
Sbjct: 240 NSMLAGY-AQNGSVEE----ALGIFRRMLQ--AGVRPVPVTFSSLIPAFGNLSLLRLGKQ 292
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
+H Y+ + + +++FI ++L+DMY KCG +D A +F+ ++ ++++WTAM G A+H
Sbjct: 293 LHAYLIRARF--NDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALH 350
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EA L + M VKPN +TF ++ AC HAGLV+ G F++M +++G P ++H
Sbjct: 351 GPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEH 410
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ + D LGRAG L+EAYNFI + IKP + +W +LL AC VH + L E+V K + +L+
Sbjct: 411 CAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELE 470
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
P+ + V LSN+Y+++ RW + +RK M++K ++ EP S ++
Sbjct: 471 PK--------SMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIE 515
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 13/242 (5%)
Query: 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
S +KVFD+M R + +WN +I G C++ K+ ++ AL + R+M D G P T+
Sbjct: 122 SMRKVFDEMLERDAVSWNTLILG-CAEHKRHQE----ALSMVREMWRD--GFMPDTFTLS 174
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
VL + ++ ++ G VHGY K + +NDVF+G++L+DMY+ C +D ++ +F
Sbjct: 175 TVLPIFAECADIKRGMVVHGYAIKNGF--DNDVFVGSSLIDMYANCTQMDYSMKVFDSFS 232
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
+ + + W +M G A +G EA+ + M GV+P VTF+SL A + L+ G
Sbjct: 233 DCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQ 292
Query: 342 LFDNM-KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400
L + ++++ I S ++D+ + G+++ A GI PD + W +++ +
Sbjct: 293 LHAYLIRARFNDNIFIS--SSLIDMYCKCGNVDIARRVFNGIQ-SPDIVSWTAMIMGYAL 349
Query: 401 HG 402
HG
Sbjct: 350 HG 351
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 36/259 (13%)
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
+A+ LF M V+ ++ L + LGL A +H ++ D F
Sbjct: 29 LHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFA--DRFT 86
Query: 257 GTALVDMYSKC---------------GCLDNALL-----IFSRMREKNVLTWTAMATGMA 296
AL+++ K G L++A +F M E++ ++W + G A
Sbjct: 87 ANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCA 146
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTS---LFAACC--HAGLVEEGLHLFDNMKSKWG 351
H + EA+ ++ M G P+ T ++ +FA C G+V G + K G
Sbjct: 147 EHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAI------KNG 200
Query: 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411
+ + S ++D+ ++ + DA+LW S+L+ +G V E +G
Sbjct: 201 FDNDVFVGSSLIDMYANCTQMDYSMKVFDSFS-DCDAVLWNSMLAGYAQNGSVE--EALG 257
Query: 412 KILLQLQPEVTFVDVACTS 430
LQ V V V +S
Sbjct: 258 IFRRMLQAGVRPVPVTFSS 276
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,397,278,847
Number of Sequences: 23463169
Number of extensions: 295675328
Number of successful extensions: 907347
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8667
Number of HSP's successfully gapped in prelim test: 2376
Number of HSP's that attempted gapping in prelim test: 778486
Number of HSP's gapped (non-prelim): 46830
length of query: 482
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 336
effective length of database: 8,933,572,693
effective search space: 3001680424848
effective search space used: 3001680424848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)