BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011587
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH--LFDNMKSKWGVEP 354
I G GN +LD D G P+ V L AA H+ +EGL+ +F +S P
Sbjct: 152 IPGPGNTVTAILDRFGDAGFSPDEVV--DLLAA--HSLASQEGLNSAIF---RSPLDSTP 204
Query: 355 HIKHYSCIVDLLGRA--------GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ ++ L + G EE F G I+ DA+L R +AC +
Sbjct: 205 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGGFRIRSDALLARDSRTACRWQSMTSS 264
Query: 407 GEKVGK 412
E +G+
Sbjct: 265 NEVMGQ 270
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH--LFDNMKSKWGVEP 354
I G GN +LD M D G P+ V L AA H+ +EGL+ +F +S P
Sbjct: 153 IPGPGNTVTAILDRMGDAGFSPDEV--VDLLAA--HSLASQEGLNSAIF---RSPLDSTP 205
Query: 355 HIKHYSCIVDLLGRA--------GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ ++ L + G EE F ++ DA+L R +AC +
Sbjct: 206 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 265
Query: 407 GEKVGK 412
E +G+
Sbjct: 266 NEVMGQ 271
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH--LFDNMKSKWGVEP 354
I G GN +LD M D G P+ V L AA H+ +EGL+ +F +S P
Sbjct: 152 IPGPGNTVTAILDRMGDAGFSPDEV--VDLLAA--HSLASQEGLNSAIF---RSPLDSTP 204
Query: 355 HIKHYSCIVDLLGRA--------GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ ++ L + G EE F ++ DA+L R +AC +
Sbjct: 205 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 264
Query: 407 GEKVGK 412
E +G+
Sbjct: 265 NEVMGQ 270
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 17/126 (13%)
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH--LFDNMKSKWGVEP 354
I G GN +LD M D G P+ V L AA H+ +EGL+ +F +S P
Sbjct: 152 IPGPGNTVTAILDRMGDAGFSPDEV--VDLLAA--HSLASQEGLNSAIF---RSPLDSTP 204
Query: 355 HIKHYSCIVDLLGRA--------GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ ++ L + G EE F ++ DA+L R +AC +
Sbjct: 205 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 264
Query: 407 GEKVGK 412
E +G+
Sbjct: 265 NEVMGQ 270
>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx
pdb|3S1L|B Chain B, Crystal Structure Of Apo-Form Furx
pdb|3S1L|C Chain C, Crystal Structure Of Apo-Form Furx
pdb|3S1L|D Chain D, Crystal Structure Of Apo-Form Furx
pdb|3S2E|A Chain A, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|B Chain B, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|C Chain C, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|D Chain D, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|E Chain E, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|F Chain F, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|G Chain G, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2E|H Chain H, Crystal Structure Of Furx Nadh Complex 1
pdb|3S2F|A Chain A, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|B Chain B, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|C Chain C, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|D Chain D, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|E Chain E, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|F Chain F, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|G Chain G, Crystal Structure Of Furx Nadh:furfural
pdb|3S2F|H Chain H, Crystal Structure Of Furx Nadh:furfural
pdb|3S2G|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2G|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol I
pdb|3S2I|A Chain A, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|B Chain B, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|C Chain C, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|D Chain D, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|E Chain E, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|F Chain F, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|G Chain G, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
pdb|3S2I|H Chain H, Crystal Structure Of Furx Nadh+:furfuryl Alcohol Ii
Length = 340
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
+YS CG ++ L + + EK TG +++G E + + G+ P+ V
Sbjct: 90 LYSACGYCEHCLQGWETLCEKQ------QNTGYSVNGGYGEYV--VADPNYVGLLPDKVG 141
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
F + C V +GL + D +W ++ +G GH+ Y MG+
Sbjct: 142 FVEIAPILCAGVTVYKGLKVTDTRPGQW----------VVISGIGGLGHVAVQYARAMGL 191
>pdb|1XPI|A Chain A, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
pdb|1XPI|B Chain B, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
Length = 231
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
SH+K + A L+ N L+S ++ Q + P T+ F + F TL+
Sbjct: 98 SHVKSVQAPLLKNILQSGERIVRVSQ-----EGKPSETR--------FKVEERYAFATLV 144
Query: 82 RCTP 85
RC+P
Sbjct: 145 RCSP 148
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH--LFDNMKSKWGVEP 354
I G GN +LD M D G P+ V L AA A +EGL+ +F +S P
Sbjct: 151 IPGPGNTVTAILDRMGDAGFSPDEV--VDLLAAXSLAS--QEGLNSAIF---RSPLDSTP 203
Query: 355 HIKHYSCIVDLLGRA--------GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVAL 406
+ ++ L + G EE F ++ DA+L R +AC +
Sbjct: 204 QVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEFRMRSDALLARDSRTACRWQSMTSS 263
Query: 407 GEKVGK 412
E +G+
Sbjct: 264 NEVMGQ 269
>pdb|1V9K|A Chain A, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
pdb|1V9K|B Chain B, The Crystal Structure Of The Catalytic Domain Of
Pseudouridine Synthase Rluc From Escherichia Coli
Length = 228
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
SH+K + A L+ N L+S ++ Q + P T+ F + F TL+
Sbjct: 95 SHVKSVQAPLLKNILQSGERIVRVSQ-----EGKPSETR--------FKVEERYAFATLV 141
Query: 82 RCTP 85
RC+P
Sbjct: 142 RCSP 145
>pdb|2B6M|A Chain A, Structure Of The Dsba Mutant (P31a-C33a)
pdb|2B6M|B Chain B, Structure Of The Dsba Mutant (P31a-C33a)
Length = 189
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW--GVEPHIKHYSCIVDLLGRAGHLEEA 375
P + F S F C HA EE LH+ DN+K K GV+ H + + LG+ L +A
Sbjct: 20 PQVLEFFSFF--CAHAYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGK--DLTQA 75
Query: 376 YNFIMGIPIK 385
+ M + ++
Sbjct: 76 WAVAMALGVE 85
>pdb|3SD2|A Chain A, Crystal Structure Of A Putative Member Of Duf3244 Protein
Family (Bt_3571) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.40 A Resolution
Length = 101
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 257 GTALVDMYSKCGCLDNALLI-FSRMREKNVLTWTAMATGMAIHGK 300
G + Y KC L N L + F R ++ ++T T ATG +H K
Sbjct: 19 GIPIQPTYEKCAILSNILNVSFGRAKDYAIITVTNKATGEIVHSK 63
>pdb|3L9S|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Dsba
Length = 191
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 16/125 (12%)
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HLEEA 375
+P + F S + C H EE LH+ DN+K K + Y V+ LG G L +A
Sbjct: 22 EPQVLEFFSFY--CPHCYQFEEVLHVSDNVKKKLPEGTKMTKYH--VEFLGPLGKELTQA 77
Query: 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435
+ M + ++ + L A V + K+ FVD ED+ A
Sbjct: 78 WAVAMALGVEDKVTV--PLFEAVQKTQTVQSAADIRKV---------FVDAGVKGEDYDA 126
Query: 436 LSNIY 440
N +
Sbjct: 127 AWNSF 131
>pdb|1LNS|A Chain A, Crystal Structure Analysis Of The X-Prolyl Dipeptidyl
Aminopeptidase From Lactococcus Lactis
Length = 763
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
CT + +++ +WVS+GLL D+ + F S A F S
Sbjct: 125 CTRRKTGMILVEHWVSEGLLPLDNHYHFFNDKSLATFDS 163
>pdb|2B3S|A Chain A, Structure Of The Dsba Mutant (P31g-C33a)
pdb|2B3S|B Chain B, Structure Of The Dsba Mutant (P31g-C33a)
Length = 189
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW--GVEPHIKHYSCIVDLLGRAGHLEEA 375
P + F S F C HA EE LH+ DN+K K GV+ H + + LG+ L +A
Sbjct: 20 PQVLEFFSFF--CGHAYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGK--DLTQA 75
Query: 376 YNFIMGIPIK 385
+ M + ++
Sbjct: 76 WAVAMALGVE 85
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 346 MKSKWGVEPHIKHYSCI-------VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ +KWGV + CI LLG A H AY + + IKPD W L+ +
Sbjct: 47 LGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDDKIKPD---WHKLVQSV 103
Query: 399 NVH 401
H
Sbjct: 104 QNH 106
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 346 MKSKWGVEPHIKHYSCI-------VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ +KWGV + CI LLG A H AY + + IKPD W L+ +
Sbjct: 43 LGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDDKIKPD---WHKLVQSV 99
Query: 399 NVH 401
H
Sbjct: 100 QNH 102
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 346 MKSKWGVEPHIKHYSCI-------VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
+ +KWGV + CI LLG A H AY + + IKPD W L+ +
Sbjct: 47 LGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDDKIKPD---WHKLVQSV 103
Query: 399 NVH 401
H
Sbjct: 104 QNH 106
>pdb|1TI1|A Chain A, Crystal Structure Of A Mutant Dsba
pdb|1U3A|A Chain A, Mutant Dsba
pdb|1U3A|B Chain B, Mutant Dsba
pdb|1U3A|D Chain D, Mutant Dsba
pdb|1U3A|E Chain E, Mutant Dsba
pdb|2HI7|A Chain A, Crystal Structure Of Dsba-Dsbb-Ubiquinone Complex
pdb|3E9J|B Chain B, Structure Of The Charge-Transfer Intermediate Of The
Transmembrane Redox Catalyst Dsbb
pdb|3E9J|E Chain E, Structure Of The Charge-Transfer Intermediate Of The
Transmembrane Redox Catalyst Dsbb
pdb|2ZUP|A Chain A, Updated Crystal Structure Of Dsbb-Dsba Complex From E.
Coli
pdb|2LEG|A Chain A, Membrane Protein Complex Dsbb-Dsba Structure By Joint
Calculations With Solid-State Nmr And X-Ray Experimental
Data
Length = 189
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW--GVEPHIKHYSCIVDLLGRAGHLEEA 375
P + F S F C HA EE LH+ DN+K K GV+ H + + LG+ L +A
Sbjct: 20 PQVLEFFSFF--CPHAYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGK--DLTQA 75
Query: 376 YNFIMGIPIK 385
+ M + ++
Sbjct: 76 WAVAMALGVE 85
>pdb|2XVO|A Chain A, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
pdb|2XVO|B Chain B, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
pdb|2XVO|C Chain C, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
pdb|2XVO|D Chain D, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
Length = 192
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
RGF+F + L + +ASN +S +K F + + ++ IN Y +Q+
Sbjct: 100 RGFVFPSQDPSQLNNIFASNNKVSVSEKAFAILNRKKEGAVSSTINVYITQN 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,934,091
Number of Sequences: 62578
Number of extensions: 545420
Number of successful extensions: 1327
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1322
Number of HSP's gapped (non-prelim): 20
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)