BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011587
(482 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970
OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/470 (52%), Positives = 332/470 (70%), Gaps = 5/470 (1%)
Query: 4 LPGHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVH 63
PG R +LL+ + T KQIHAQL+ N L+ +LI YC+K ++ S+K+ H
Sbjct: 5 FPGPRFLSLLQQNS-KTLIQAKQIHAQLVINGCHDNSLFGKLIGHYCSKPSTESSSKLAH 63
Query: 64 F-VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCS 121
VF F P+ FLFNTL++C+ P+DS+ +FA + SK LL ++ T+VF LG+CAR S
Sbjct: 64 LLVFPRFGHPDKFLFNTLLKCSKPEDSIRIFANYASKSSLLYLNERTFVFVLGACARSAS 123
Query: 122 LSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
S L +GR +H V K GF++ + L+ TTL+HFYA N D+ +KVFD+MP R+S TWNA
Sbjct: 124 SSALRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNA 183
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
MI GYCS K A A+VLFR SGV+PTDTTMVCVLS SQ GLLE G+ VH
Sbjct: 184 MIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVH 243
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+EK + PE DVFIGTALVDMYSKCGCL+NA +F M+ KNV TWT+MATG+A++G+
Sbjct: 244 GYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGR 303
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
GNE LL+ M + G+KPN +TFTSL +A H GLVEEG+ LF +MK+++GV P I+HY
Sbjct: 304 GNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYG 363
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVDLLG+AG ++EAY FI+ +PIKPDAIL RSL +AC+++G+ +GE++GK LL+++ E
Sbjct: 364 CIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIERE 423
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470
+ ED+VALSN+ A +W +VE +RK+MK +R++T PG S +
Sbjct: 424 DEKLS-GSECEDYVALSNVLAHKGKWVEVEKLRKEMKERRIKTRPGYSFV 472
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 301 bits (770), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 182/539 (33%), Positives = 280/539 (51%), Gaps = 94/539 (17%)
Query: 2 LSLPGHRCFALLK----LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCT---KKA 54
+++ H C +LL L+A+T QIH I + + + + L+C A
Sbjct: 1 MTIAIHHCLSLLNSCKNLRALT------QIHGLFIKYGVDTDSYFTGKLILHCAISISDA 54
Query: 55 SPQSTKIVHFVFTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYV 110
P + +++ F P+ F+FNTL+R P +SV VF + KG + D F++
Sbjct: 55 LPYARRLL----LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFA 110
Query: 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS-------------- 156
F + + F SL T G Q+H K G ++ V TTLI Y
Sbjct: 111 FVIKAVENFRSLRT---GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM 167
Query: 157 -----------------NKDISSGKKVFDQMPMRSSATWNAMINGYCS----QSKK---- 191
D++ +++FD+M +R+ +WN M+ GY +S K
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 192 -----------------AKDCAFN-ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233
A + +FN + + FR++ +G+ P + ++ VLS SQ G
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL--QRAGMSPNEVSLTGVLSACSQSGSF 285
Query: 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-VLTWTAMA 292
EFG +HG++EK Y V + AL+DMYS+CG + A L+F M+EK +++WT+M
Sbjct: 286 EFGKILHGFVEKAGY--SWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMI 343
Query: 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352
G+A+HG+G EA+RL + M GV P+ ++F SL AC HAGL+EEG F MK + +
Sbjct: 344 AGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHI 403
Query: 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412
EP I+HY C+VDL GR+G L++AY+FI +PI P AI+WR+LL AC+ HG++ L E+V +
Sbjct: 404 EPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQ 463
Query: 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L +L P S D V LSN YA+A +W DV S+RK M V+R++ S+++
Sbjct: 464 RLNELDPN--------NSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVE 514
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHF 64
+C LL+ +++ + ++QIHA I + ++ L LI Y SP H
Sbjct: 16 EKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLI-FYLVSLPSPPPMSYAHK 74
Query: 65 VFTHFDPP-NLFLFNTLIRCTPP-QDSVLVFAYWVS---KGLLTFDDFTYVFALGSCARF 119
VF+ + P N+F++NTLIR +S+ F+ + GL+ D TY F + +
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT-- 132
Query: 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
+++ + LG IH V + GF + V +L+H YA+ D++S KVFD+MP + WN
Sbjct: 133 -TMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
++ING+ K + AL L+ +M + G+KP T+V +LS +++G L G V
Sbjct: 192 SVINGFAENGKPEE-----ALALYTEM--NSKGIKPDGFTIVSLLSACAKIGALTLGKRV 244
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H YM K ++ L+D+Y++CG ++ A +F M +KN ++WT++ G+A++G
Sbjct: 245 HVYMIKVGLT--RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNG 302
Query: 300 KGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G EAI L M G+ P +TF + AC H G+V+EG F M+ ++ +EP I+H
Sbjct: 303 FGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEH 362
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ C+VDLL RAG +++AY +I +P++P+ ++WR+LL AC VHGD L E +LQL+
Sbjct: 363 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLE 422
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
P S D+V LSN+YAS +RW DV+ +RKQM V+ PG S+++
Sbjct: 423 PN--------HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 258/490 (52%), Gaps = 48/490 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + + + K+I+A +I + L + +C K + +F PN+
Sbjct: 17 LQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDK---IEDMDYATRLFNQVSNPNV 73
Query: 75 FLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+N++IR D + ++ + K D FT+ F SCA SL + +LG+Q
Sbjct: 74 FLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA---SLGSCYLGKQ 130
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC--SQ 188
+H H+ K G F+V+ LI Y D+ KVFD+M R +WN++++GY Q
Sbjct: 131 VHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 189 SKKAKD------------------------CAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
KKAK C A+ FR+M ++G++P + +++ VL
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREM--QLAGIEPDEISLISVL 248
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+QLG LE G +H Y E+ ++ + V AL++MYSKCG + A+ +F +M K+
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRGFLKQTGVC--NALIEMYSKCGVISQAIQLFGQMEGKD 306
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V++W+ M +G A HG + AI + M+ VKPN +TF L +AC H G+ +EGL FD
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD 366
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M+ + +EP I+HY C++D+L RAG LE A +P+KPD+ +W SLLS+C G++
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNL 426
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
+ L++L+PE D+ ++V L+NIYA +W DV +RK ++ + ++
Sbjct: 427 DVALVAMDHLVELEPE----DMG----NYVLLANIYADLGKWEDVSRLRKMIRNENMKKT 478
Query: 465 PGSSILQTTT 474
PG S+++
Sbjct: 479 PGGSLIEVNN 488
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 167/500 (33%), Positives = 257/500 (51%), Gaps = 48/500 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L+ + +KQIHA+++ L +C S VF FD P+
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDT 80
Query: 75 FLFNTLIR---CT-PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
FL+N +IR C+ P+ S+L++ + + +T+ L +C+ +LS Q
Sbjct: 81 FLWNLMIRGFSCSDEPERSLLLYQRMLCSSA-PHNAYTFPSLLKACS---NLSAFEETTQ 136
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190
IH +TK G+ +V +LI+ YA + +FD++P +WN++I GY K
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 191 K--------------------------AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
D AL LF +M S V+P + ++ L
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEM--QNSDVEPDNVSLANAL 254
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
S +QLG LE G +H Y+ KT D +G L+DMY+KCG ++ AL +F +++K+
Sbjct: 255 SACAQLGALEQGKWIHSYLNKT--RIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKS 312
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
V WTA+ +G A HG G EAI M+ G+KPN +TFT++ AC + GLVEEG +F
Sbjct: 313 VQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFY 372
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
+M+ + ++P I+HY CIVDLLGRAG L+EA FI +P+KP+A++W +LL AC +H ++
Sbjct: 373 SMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI 432
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE++G+IL+ + P +V +NI+A ++W R+ MK + V
Sbjct: 433 ELGEEIGEILIAIDP--------YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKV 484
Query: 465 PGSSI--LQTTTHYTLDGFR 482
PG S L+ TTH L G R
Sbjct: 485 PGCSTISLEGTTHEFLAGDR 504
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 249/453 (54%), Gaps = 26/453 (5%)
Query: 26 QIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-- 83
QI A I + ++ A+LI +CT+ + S +F P++ +FN++ R
Sbjct: 47 QIQAYAIKSHIEDVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYS 105
Query: 84 --TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFM 141
T P + +F + G+L D++T+ L +CA +L GRQ+H K G
Sbjct: 106 RFTNPLEVFSLFVEILEDGILP-DNYTFPSLLKACAVAKALEE---GRQLHCLSMKLGLD 161
Query: 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201
NV V TLI+ Y +D+ S + VFD++ +NAMI GY +++ + AL
Sbjct: 162 DNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNE-----ALS 216
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261
LFR+M +KP + T++ VLS + LG L+ G +H Y +K + V + TAL+
Sbjct: 217 LFREM--QGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY--VKVNTALI 272
Query: 262 DMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321
DM++KCG LD+A+ IF +MR K+ W+AM A HGK +++ + + MR V+P+ +
Sbjct: 273 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 332
Query: 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381
TF L AC H G VEEG F M SK+G+ P IKHY +VDLL RAG+LE+AY FI
Sbjct: 333 TFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDK 392
Query: 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441
+PI P +LWR LL+AC+ H ++ L EKV + + +L D+V LSN+YA
Sbjct: 393 LPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDS--------HGGDYVILSNLYA 444
Query: 442 SAERWPDVESVRKQMKVKRVETEPGSSILQTTT 474
++W V+S+RK MK ++ PG S ++
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNN 477
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/466 (35%), Positives = 257/466 (55%), Gaps = 28/466 (6%)
Query: 19 TTPSHIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
T H++QIHA L+ T+ +++ ++ + P+ VF+ P L
Sbjct: 22 TGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLI-PRDINYSCRVFSQRLNPTLSHC 80
Query: 78 NTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NT+IR P + +F L + + FAL C + L G QIH
Sbjct: 81 NTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKS---GDLLGGLQIHG 137
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ GF+ + L+ TTL+ Y++ ++ + KVFD++P R + +WN + + Y ++K+ +
Sbjct: 138 KIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYL-RNKRTR 196
Query: 194 DCAFNALVLFRDMLVDVSG-VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
D LVLF M DV G VKP T + L + LG L+FG VH ++++
Sbjct: 197 D----VLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGL--SG 250
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
+ + LV MYS+CG +D A +F MRE+NV++WTA+ +G+A++G G EAI + M
Sbjct: 251 ALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEML 310
Query: 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-KWGVEPHIKHYSCIVDLLGRAGH 371
G+ P T T L +AC H+GLV EG+ FD M+S ++ ++P++ HY C+VDLLGRA
Sbjct: 311 KFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARL 370
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
L++AY+ I + +KPD+ +WR+LL AC VHGDV LGE+V L++L+ E +
Sbjct: 371 LDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAE--------EAG 422
Query: 432 DFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D+V L N Y++ +W V +R MK KR+ T+PG S LQ T H
Sbjct: 423 DYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVH 468
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 278 bits (710), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 254/493 (51%), Gaps = 57/493 (11%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L++ +H+ IHA++I +LI++ T S + VF++ PN
Sbjct: 36 LRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCST----LDSVDYAYDVFSYVSNPN 91
Query: 74 LFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
++L+ +I D V ++ + +L D++ L +C L + R
Sbjct: 92 VYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLP-DNYVITSVLKAC-------DLKVCR 143
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-- 187
+IH V K GF + V ++ Y + ++ + KK+FD+MP R MIN Y
Sbjct: 144 EIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG 203
Query: 188 ---------QSKKAKDCA---------------FNALVLFRDMLVDVSGVKPTDTTMVCV 223
Q K KD AL LFR+M ++ V + T VCV
Sbjct: 204 FIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQME--NVSANEFTAVCV 261
Query: 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
LS S LG LE G VH ++E N F+G AL++MYS+CG ++ A +F MR+K
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSN--FVGNALINMYSRCGDINEARRVFRVMRDK 319
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343
+V+++ M +G+A+HG EAI M + G +PN VT +L AC H GL++ GL +F
Sbjct: 320 DVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVF 379
Query: 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403
++MK + VEP I+HY CIVDLLGR G LEEAY FI IPI+PD I+ +LLSAC +HG+
Sbjct: 380 NSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGN 439
Query: 404 VALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462
+ LGEK+ K L + + P+ S +V LSN+YAS+ +W + +R+ M+ +E
Sbjct: 440 MELGEKIAKRLFESENPD---------SGTYVLLSNLYASSGKWKESTEIRESMRDSGIE 490
Query: 463 TEPGSSILQTTTH 475
EPG S ++
Sbjct: 491 KEPGCSTIEVDNQ 503
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 277 bits (709), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/490 (32%), Positives = 267/490 (54%), Gaps = 48/490 (9%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS-PQSTKIVHF---VFTHFD 70
L++ ++ S +K IH L+ L S A + C ++ + T ++ + +F+
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQ 78
Query: 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTLWL 127
PNLF+FN LIRC + + F ++ K + D+ T+ F + + + + + +
Sbjct: 79 NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE---MECVLV 135
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G Q H + + GF +V V +L+H YA+ I++ ++F QM R +W +M+ GYC
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCK 195
Query: 188 --------------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMV 221
+C A+ LF M + GV +T MV
Sbjct: 196 CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKRE--GVVANETVMV 253
Query: 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281
V+S + LG LEFG + Y+ K+ +M N + +GTALVDM+ +CG ++ A+ +F +
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKS-HMTVN-LILGTALVDMFWRCGDIEKAIHVFEGLP 311
Query: 282 EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341
E + L+W+++ G+A+HG ++A+ M G P VTFT++ +AC H GLVE+GL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+++NMK G+EP ++HY CIVD+LGRAG L EA NFI+ + +KP+A + +LL AC ++
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIY 431
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
+ + E+VG +L++++PE S +V LSNIYA A +W +ES+R MK K V
Sbjct: 432 KNTEVAERVGNMLIKVKPE--------HSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 462 ETEPGSSILQ 471
+ PG S+++
Sbjct: 484 KKPPGWSLIE 493
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 253/504 (50%), Gaps = 72/504 (14%)
Query: 20 TPSHIKQIHAQLITNALKSPPLYAQLIQLYC-TKKASPQSTKIVHFVFTHFDPPNLFLFN 78
T + QIHA I + L A I +C T + H +F N F +N
Sbjct: 35 TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94
Query: 79 TLIRCTPPQD------SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
T+IR D ++ +F +S + + FT+ L +CA+ + G+QIH
Sbjct: 95 TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE---GKQIH 151
Query: 133 VHVTKRGFMFNVLVATTLIHFYAS----------------NKDI---------------- 160
K GF + V + L+ Y KD+
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 161 -------------SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207
+ + +FD+M RS +WN MI+GY S + KD A+ +FR+M
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY-SLNGFFKD----AVEVFREM- 265
Query: 208 VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267
++P T+V VL S+LG LE G +H Y E + D +G+AL+DMYSKC
Sbjct: 266 -KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI--RIDDVLGSALIDMYSKC 322
Query: 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327
G ++ A+ +F R+ +NV+TW+AM G AIHG+ +AI MR GV+P+ V + +L
Sbjct: 323 GIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 382
Query: 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
AC H GLVEEG F M S G+EP I+HY C+VDLLGR+G L+EA FI+ +PIKPD
Sbjct: 383 TACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPD 442
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447
++W++LL AC + G+V +G++V IL+ + P S +VALSN+YAS W
Sbjct: 443 DVIWKALLGACRMQGNVEMGKRVANILMDMVPH--------DSGAYVALSNMYASQGNWS 494
Query: 448 DVESVRKQMKVKRVETEPGSSILQ 471
+V +R +MK K + +PG S++
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLID 518
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 254/471 (53%), Gaps = 26/471 (5%)
Query: 3 SLPGHRCFALLKL--KAITTPSHIKQIHAQLITNALKSPPLYA-QLIQLYCTKKASPQST 59
S P + + LL L ++ S ++H ++ N P A +LI +Y + +
Sbjct: 73 SSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYAR 132
Query: 60 KIVHFVFTHFDPPNLFLFNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116
K VF ++++N L R + VL + +++ + D FTY + L +C
Sbjct: 133 K----VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188
Query: 117 -ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
A C+++ L G++IH H+T+RG+ +V + TTL+ YA + VF MP+R+
Sbjct: 189 VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNV 248
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+W+AMI Y K AF AL FR+M+ + P TMV VL + L LE
Sbjct: 249 VSWSAMIACYAKNGK-----AFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQ 303
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G +HGY+ + ++ + + +ALV MY +CG L+ +F RM +++V++W ++ +
Sbjct: 304 GKLIHGYILRRGL--DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG G +AI++ + M G P VTF S+ AC H GLVEEG LF+ M G++P
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ 421
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY+C+VDLLGRA L+EA + + +P +W SLL +C +HG+V L E+ + L
Sbjct: 422 IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466
L+P+ + ++V L++IYA A+ W +V+ V+K ++ + ++ PG
Sbjct: 482 ALEPK--------NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPG 524
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 271 bits (693), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 161/463 (34%), Positives = 244/463 (52%), Gaps = 29/463 (6%)
Query: 22 SHIKQIHAQLITNALKSPP----LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
S +KQ+HA + P LY +++QL +S VF + + F++
Sbjct: 62 SQLKQLHAFTLRTTYPEEPATLFLYGKILQL----SSSFSDVNYAFRVFDSIENHSSFMW 117
Query: 78 NTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132
NTLIR + +++ +++ + +G + D T+ F L +CA S G+Q+H
Sbjct: 118 NTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE---GKQVH 174
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ K GF +V V LIH Y S + +KVFD+MP RS +WN+MI+ +
Sbjct: 175 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 234
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM-EKTFYMPE 251
+AL LFR+M +P TM VLS + LG L G H ++ K
Sbjct: 235 -----SALQLFREMQ---RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVA 286
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
DV + +L++MY KCG L A +F M+++++ +W AM G A HG+ EA+ D M
Sbjct: 287 MDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRM 346
Query: 312 RDC--GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
D V+PN+VTF L AC H G V +G FD M + +EP ++HY CIVDL+ RA
Sbjct: 347 VDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARA 406
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG-DVALGEKVGKILLQLQPEVTFVDVAC 428
G++ EA + +M +P+KPDA++WRSLL AC G V L E++ + ++ + + + C
Sbjct: 407 GYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNC 466
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V LS +YASA RW DV VRK M + EPG S ++
Sbjct: 467 SGA-YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIE 508
>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730
OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1
Length = 501
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 256/476 (53%), Gaps = 40/476 (8%)
Query: 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFV 65
H+C LKL ++ H+ QIH Q+ ++L++ + ++L+++ A + +
Sbjct: 14 HQCLIFLKL--CSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLA--KDLAFARTL 69
Query: 66 FTHFDPPNLFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121
H +N L R P +S+ V++ +G+ + T+ F L +CA F
Sbjct: 70 LLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKP-NKLTFPFLLKACASFLG 128
Query: 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
L+ GRQI V V K GF F+V V LIH Y + K S +KVFD+M R+ +WN++
Sbjct: 129 LTA---GRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSI 185
Query: 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK--PTDTTMVCVLSVSSQLGLLEFGACV 239
+ K L L + ++ G + P +TTMV +LS G L G V
Sbjct: 186 MTALVENGK---------LNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLV 234
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H + E + +GTALVDMY+K G L+ A L+F RM +KNV TW+AM G+A +G
Sbjct: 235 HS--QVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYG 292
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
EA++L M ++ V+PN VTF + AC H GLV++G F M+ ++P + H
Sbjct: 293 FAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIH 352
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH---GDVALGEKVGKILL 415
Y +VD+LGRAG L EAY+FI +P +PDA++WR+LLSAC++H D +GEKV K L+
Sbjct: 353 YGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLI 412
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L+P+ S + V ++N +A A W + VR+ MK +++ G S L+
Sbjct: 413 ELEPK--------RSGNLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLE 460
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 261/479 (54%), Gaps = 32/479 (6%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
+L + T IK H+ I + L YA + +L P K H+ + FD
Sbjct: 15 ILASQRCNTVKQIKSTHSLFIIHGLHRNT-YA-ISKLLTAFLHLPNLNKHFHYASSIFDS 72
Query: 72 ---PNLFLFNTLIR-CTPPQDSVLVFAYWVSKGLLTFDD-----FTYVFALGSCARFCSL 122
PN F+++T+IR C+ L Y++ +D T+ F + +C + C
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFF 132
Query: 123 STLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
S +G+QIH V K G F+ + V T ++ Y +K + +KVFD++P W+ +
Sbjct: 133 S---VGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVL 189
Query: 182 INGYCSQSKKAKDCAFNA--LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+NGY C + L +FR+MLV G++P + ++ L+ +Q+G L G +
Sbjct: 190 MNGYVR-------CGLGSEGLEVFREMLV--KGLEPDEFSVTTALTACAQVGALAQGKWI 240
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H +++K ++ E+DVF+GTALVDMY+KCGC++ A+ +F ++ +NV +W A+ G A +G
Sbjct: 241 HEFVKKKSWI-ESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYG 299
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+A+ L+ + R+ G+KP++V + AAC H G +EEG + +NM++++ + P +H
Sbjct: 300 YAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEH 359
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSCIVDL+ RAG L++A N I +P+KP A +W +LL+ C H +V LGE K LL L+
Sbjct: 360 YSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLE 419
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477
+V V LSNIY S +R P+ VR ++ + V PG S+L+ + T
Sbjct: 420 KG----NVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVT 474
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 162/489 (33%), Positives = 251/489 (51%), Gaps = 53/489 (10%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL 74
L T + + +IHA L+ + L L L+ + + S ++ + VF+H PN+
Sbjct: 11 LHGHNTRTRLPEIHAHLLRHFLHGSNL---LLAHFISICGSLSNSDYANRVFSHIQNPNV 67
Query: 75 FLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQ 130
+FN +I+C PP +S+ F+ S+G+ D++TY L SC+ SLS L G+
Sbjct: 68 LVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWA-DEYTYAPLLKSCS---SLSDLRFGKC 123
Query: 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYC---- 186
+H + + GF + ++ Y S + +KVFD+M R+ WN MI G+C
Sbjct: 124 VHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGD 183
Query: 187 ------------------------SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222
S SK +D AL LF +M+ G P + T+V
Sbjct: 184 VERGLHLFKQMSERSIVSWNSMISSLSKCGRD--REALELFCEMIDQ--GFDPDEATVVT 239
Query: 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282
VL +S+ LG+L+ G +H E + + ++ + +G ALVD Y K G L+ A IF +M+
Sbjct: 240 VLPISASLGVLDTGKWIHSTAESS-GLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQR 298
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLH 341
+NV++W + +G A++GKG I L D+M + G V PN TF + A C + G VE G
Sbjct: 299 RNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEE 358
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
LF M ++ +E +HY +VDL+ R+G + EA+ F+ +P+ +A +W SLLSAC H
Sbjct: 359 LFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSH 418
Query: 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
GDV L E L++++P S ++V LSN+YA RW DVE VR MK R+
Sbjct: 419 GDVKLAEVAAMELVKIEP--------GNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRL 470
Query: 462 ETEPGSSIL 470
G S +
Sbjct: 471 RKSTGQSTI 479
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 251/468 (53%), Gaps = 27/468 (5%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQL-YCTKKASPQSTKIVHFVFTHFDPPN 73
LK KQ+HA+ I +L ++ L C S +F D P
Sbjct: 37 LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
F FNT+IR ++++ + + +G D+FTY L +C R L ++ G+
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEP-DNFTYPCLLKACTR---LKSIREGK 152
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
QIH V K G +V V +LI+ Y ++ VF+++ +++A+W++M++
Sbjct: 153 QIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMG 212
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
++ L+LFR M + + +K ++ MV L + G L G +HG++ + +
Sbjct: 213 MWSE-----CLLLFRGMCSE-TNLKAEESGMVSALLACANTGALNLGMSIHGFLLRN--I 264
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
E ++ + T+LVDMY KCGCLD AL IF +M ++N LT++AM +G+A+HG+G A+R+
Sbjct: 265 SELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFS 324
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M G++P+ V + S+ AC H+GLV+EG +F M + VEP +HY C+VDLLGRA
Sbjct: 325 KMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRA 384
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429
G LEEA I IPI+ + ++WR+ LS C V ++ LG+ + LL+L
Sbjct: 385 GLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSH--------N 436
Query: 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI--LQTTTH 475
D++ +SN+Y+ + W DV R ++ +K ++ PG SI L+ TH
Sbjct: 437 PGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTH 484
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/483 (33%), Positives = 247/483 (51%), Gaps = 52/483 (10%)
Query: 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
+KQ H +I L L C+ + + VFTH PN +L NT+IR
Sbjct: 31 LKQSHCYMIITGLNRDNLNVAKFIEACSNAGH---LRYAYSVFTHQPCPNTYLHNTMIRA 87
Query: 84 -----TPPQDSVLVFAYWVSKGLLTF-DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
P S+ + Y L D FT+ F L R +S +W GRQIH V
Sbjct: 88 LSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVR---VSDVWFGRQIHGQVVV 144
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY------------ 185
GF +V V T LI Y S + +K+FD+M ++ WNA++ GY
Sbjct: 145 FGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSL 204
Query: 186 ---------------CSQSKKAKDC-AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
C S AK A A+ +F+ ML++ V+P + T++ VLS +
Sbjct: 205 LEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLME--NVEPDEVTLLAVLSACAD 262
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG LE G + Y++ V + A++DMY+K G + AL +F + E+NV+TWT
Sbjct: 263 LGSLELGERICSYVDHRGM--NRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWT 320
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
+ G+A HG G EA+ + + M GV+PN VTF ++ +AC H G V+ G LF++M+SK
Sbjct: 321 TIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSK 380
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+ P+I+HY C++DLLGRAG L EA I +P K +A +W SLL+A NVH D+ LGE+
Sbjct: 381 YGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGER 440
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
L++L+P S +++ L+N+Y++ RW + +R MK V+ G S
Sbjct: 441 ALSELIKLEPN--------NSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESS 492
Query: 470 LQT 472
++
Sbjct: 493 IEV 495
>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550
OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1
Length = 581
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 158/469 (33%), Positives = 249/469 (53%), Gaps = 40/469 (8%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP-PN 73
L+ + +++IH+ +I N L+ P + +C + S +F HFD P+
Sbjct: 12 LQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTG-SLSHAQLLFDHFDSDPS 70
Query: 74 LFLFNTLIR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+N LIR + P +S+L + + + D FT+ FAL SC R S+
Sbjct: 71 TSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL--- 127
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
+IH V + GF+ + +VAT+L+ Y++N + KVFD+MP+R +WN MI
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMI------- 180
Query: 190 KKAKDCAFN-------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
C F+ AL +++ M GV T+V +LS + + L G +H
Sbjct: 181 -----CCFSHVGLHNQALSMYKRM--GNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRI 233
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
E+ VF+ AL+DMY+KCG L+NA+ +F+ MR+++VLTW +M G +HG G
Sbjct: 234 ACDI--RCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGV 291
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362
EAI M GV+PNA+TF L C H GLV+EG+ F+ M S++ + P++KHY C+
Sbjct: 292 EAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCM 351
Query: 363 VDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422
VDL GRAG LE + I D +LWR+LL +C +H ++ LGE K L+QL+
Sbjct: 352 VDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLE---- 407
Query: 423 FVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
A + D+V +++IY++A S+RK ++ ++T PG S ++
Sbjct: 408 ----AFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIE 452
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 261 bits (668), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 260/474 (54%), Gaps = 32/474 (6%)
Query: 12 LLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP 71
+L + T IK H+ I + L YA + +L P K H+ + FD
Sbjct: 15 ILASQRCNTVKQIKSTHSLFIIHGLHRNT-YA-ISKLLTAFLHLPNLNKHFHYASSIFDS 72
Query: 72 ---PNLFLFNTLIR-CTPPQDSVLVFAYWV-----SKGLLTFDDFTYVFALGSCARFCSL 122
PN F+++T+IR C+ L Y++ + +T T+ F + +C + C
Sbjct: 73 IEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFF 132
Query: 123 STLWLGRQIHVHVTKRG-FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAM 181
S +G+QIH V K G F+ + V T ++ Y +K + +KVFD++P W+ +
Sbjct: 133 S---VGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVL 189
Query: 182 INGYCSQSKKAKDCAFNA--LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACV 239
+NGY C + L +F++MLV G++P + ++ L+ +Q+G L G +
Sbjct: 190 MNGYVR-------CGLGSEGLEVFKEMLV--RGIEPDEFSVTTALTACAQVGALAQGKWI 240
Query: 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299
H +++K ++ E+DVF+GTALVDMY+KCGC++ A+ +F ++ +NV +W A+ G A +G
Sbjct: 241 HEFVKKKRWI-ESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYG 299
Query: 300 KGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
+A LD + R+ G+KP++V + AAC H G +EEG + +NM++++G+ P +H
Sbjct: 300 YAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEH 359
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
YSCIVDL+ RAG L++A + I +P+KP A +W +LL+ C H +V LGE + LL L+
Sbjct: 360 YSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLE 419
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
+V V LSNIY S +R P+ VR ++ + + PG S+L+
Sbjct: 420 KG----NVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEV 469
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 261 bits (668), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 158/477 (33%), Positives = 254/477 (53%), Gaps = 40/477 (8%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNA-LKSPPLYAQLIQLYCTKKASPQSTKIVHFVF 66
R + ++ + S IKQ+ + +T +S L ++L++ S + +F
Sbjct: 3 RVYMETMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQ--IF 60
Query: 67 THFDPPNLFLFNTLIRC-TPPQDSVLVFAYWVS--------KGLLTFDDFTYVFALGSCA 117
+ P +N +IR L F+++ S + D T F L +CA
Sbjct: 61 RYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACA 120
Query: 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177
R S + Q+H + +RG + L+ TTL+ Y+ N D+ S K+FD+MP+R A+
Sbjct: 121 RALCSSAM---DQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVAS 177
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WNA+I G S ++ A A+ L++ M + G++ ++ T+V L S LG ++ G
Sbjct: 178 WNALIAGLVSGNR-----ASEAMELYKRM--ETEGIRRSEVTVVAALGACSHLGDVKEGE 230
Query: 238 CV-HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-EKNVLTWTAMATGM 295
+ HGY ++V + A +DMYSKCG +D A +F + +K+V+TW M TG
Sbjct: 231 NIFHGY-------SNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGF 283
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
A+HG+ + A+ + D + D G+KP+ V++ + AC HAGLVE GL +F+NM K GVE +
Sbjct: 284 AVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERN 342
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+KHY C+VDLL RAG L EA++ I + + PD +LW+SLL A ++ DV + E + +
Sbjct: 343 MKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIK 402
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQT 472
++ DFV LSN+YA+ RW DV VR M+ K+V+ PG S ++
Sbjct: 403 EMGVN--------NDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEA 451
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 252/476 (52%), Gaps = 48/476 (10%)
Query: 26 QIHAQLITNALKSPPLYAQL-IQLYCTKKASPQSTKIVH--FVFTHFDPPNLFLFNTLIR 82
QIHA ++ + L P Y L ++L+ +A KI H +F P+LFLF I
Sbjct: 47 QIHAAILRHNLLLHPRYPVLNLKLH---RAYASHGKIRHSLALFHQTIDPDLFLFTAAIN 103
Query: 83 CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF 142
T + + A+ + LL+ + F S + CS + G+ IH HV K G
Sbjct: 104 -TASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS---GKLIHTHVLKFGLGI 159
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDCAFN--- 198
+ VAT L+ YA D+ S +KVFD+MP RS + AMI Y Q +A F+
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC 219
Query: 199 ----------------------ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
AL+LF+ +L + KP + T+V LS SQ+G LE G
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE-GKPKPDEITVVAALSACSQIGALETG 278
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
+H +++ + +V + T L+DMYSKCG L+ A+L+F+ K+++ W AM G A
Sbjct: 279 RWIHVFVKSSRI--RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYA 336
Query: 297 IHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG +A+RL + M+ G++P +TF AC HAGLV EG+ +F++M ++G++P
Sbjct: 337 MHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
I+HY C+V LLGRAG L+ AY I + + D++LW S+L +C +HGD LG+++ + L+
Sbjct: 397 IEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLI 456
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
L + + + +V LSNIYAS + V VR MK K + EPG S ++
Sbjct: 457 GLNIKNSGI--------YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIE 504
>sp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g43790
OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1
Length = 460
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 250/482 (51%), Gaps = 46/482 (9%)
Query: 6 GHRCFALL-KLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIV 62
HRC L+ K K++ ++KQIHAQ+IT L + PL ++L+ L T S +
Sbjct: 9 NHRCLNLISKCKSL---QNLKQIHAQIITIGLSHHTYPL-SKLLHLSSTVCLSYALS--- 61
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQDSV----LVFAYW-----VSKGLLTFDDFTYVFAL 113
+ P++FL+NTLI + L F+ + + ++FTY
Sbjct: 62 --ILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTY---- 115
Query: 114 GSCARFCSLSTLWL--GRQIHVHVTK--RGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
S + W GR +H HV K + V L+ FYA+ + + +F++
Sbjct: 116 PSLFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFER 175
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
+ ATWN ++ Y + + D L+LF M V+P + ++V ++ +
Sbjct: 176 IREPDLATWNTLLAAYANSEEIDSD--EEVLLLFMRM-----QVRPNELSLVALIKSCAN 228
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
LG G H Y+ K + F+GT+L+D+YSKCGCL A +F M +++V +
Sbjct: 229 LGEFVRGVWAHVYVLKNNLTL--NQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYN 286
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
AM G+A+HG G E I L S+ G+ P++ TF +AC H+GLV+EGL +F++MK+
Sbjct: 287 AMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAV 346
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
+G+EP ++HY C+VDLLGR+G LEEA I +P+KP+A LWRS L + HGD GE
Sbjct: 347 YGIEPKVEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGEI 406
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
K LL L+ E S ++V LSNIYA RW DVE R+ MK RV PG S
Sbjct: 407 ALKHLLGLEFE--------NSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGIST 458
Query: 470 LQ 471
L
Sbjct: 459 LN 460
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 244/461 (52%), Gaps = 40/461 (8%)
Query: 23 HIKQIHAQLI-TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
++Q+HA LI T +S L +LI L C+ +A H +F P+ FLFN++I
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARA----IAYTHLLFLSVPLPDDFLFNSVI 79
Query: 82 RCTP----PQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ T P V + +S + + ++T+ + SCA LS L +G+ +H H
Sbjct: 80 KSTSKLRLPLHCVAYYRRMLSSNV-SPSNYTFTSVIKSCA---DLSALRIGKGVHCHAVV 135
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF 197
GF + V L+ FY+ D+ ++VFD+MP +S WN++++G+ + D A
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGF--EQNGLADEAI 193
Query: 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN---DV 254
R+ SG +P T V +LS +Q G + G+ VH Y+ + E +V
Sbjct: 194 QVFYQMRE-----SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYI-----ISEGLDLNV 243
Query: 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD- 313
+GTAL+++YS+CG + A +F +M+E NV WTAM + HG G +A+ L + M D
Sbjct: 244 KLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDD 303
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373
CG PN VTF ++ +AC HAGLVEEG ++ M + + P ++H+ C+VD+LGRAG L+
Sbjct: 304 CGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLD 363
Query: 374 EAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
EAY FI + A LW ++L AC +H + LG ++ K L+ L+P+
Sbjct: 364 EAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPD--------NP 415
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
V LSNIYA + + +V +R M + + G S+++
Sbjct: 416 GHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIE 456
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 142/428 (33%), Positives = 225/428 (52%), Gaps = 50/428 (11%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L N + + ++ V+ S+G+ DD T + + SC+ L+ G++ + +V
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKP-DDVTMIGLVSSCSMLGDLNR---GKEFYEYV 283
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS-------- 187
+ G + + L+ ++ DI +++FD + R+ +W MI+GY
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 188 ----------------------QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
Q+K+ +D AL LF++M S KP + TM+ LS
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQD----ALALFQEM--QTSNTKPDEITMIHCLS 397
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
SQLG L+ G +H Y+EK Y +V +GT+LVDMY+KCG + AL +F ++ +N
Sbjct: 398 ACSQLGALDVGIWIHRYIEK--YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNS 455
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
LT+TA+ G+A+HG + AI + M D G+ P+ +TF L +ACCH G+++ G F
Sbjct: 456 LTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQ 515
Query: 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405
MKS++ + P +KHYS +VDLLGRAG LEEA + +P++ DA +W +LL C +HG+V
Sbjct: 516 MKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVE 575
Query: 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEP 465
LGEK K LL+L P + + +V L +Y A W D + R+ M + VE P
Sbjct: 576 LGEKAAKKLLELDPSDSGI--------YVLLDGMYGEANMWEDAKRARRMMNERGVEKIP 627
Query: 466 GSSILQTT 473
G S ++
Sbjct: 628 GCSSIEVN 635
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/423 (27%), Positives = 196/423 (46%), Gaps = 58/423 (13%)
Query: 23 HIKQIHAQLITNALKSPPLYAQLIQLYCTKKAS---PQSTKIVHFVFTHFDPPNLFLFNT 79
H+KQI AQ+I N L P + + +C S S KI+ + + PN+F +N
Sbjct: 68 HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGI----ENPNIFSWNV 123
Query: 80 LIR----CTPPQDSVLVFAYWVSKGLLTF--DDFTYVFALGSCA--RFCSLSTLWLGRQI 131
IR P++S L++ + G D FTY CA R SL + LG
Sbjct: 124 TIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG--- 180
Query: 132 HVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
HV K V IH +AS D+ + +KVFD+ P+R +WN +INGY KK
Sbjct: 181 --HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGY----KK 234
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME------- 244
+ A A+ +++ L++ GVKP D TM+ ++S S LG L G + Y++
Sbjct: 235 IGE-AEKAIYVYK--LMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291
Query: 245 ---------------------KTFYMPENDVFIG-TALVDMYSKCGCLDNALLIFSRMRE 282
+ F E + T ++ Y++CG LD + +F M E
Sbjct: 292 IPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEE 351
Query: 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
K+V+ W AM G +G +A+ L M+ KP+ +T +AC G ++ G+ +
Sbjct: 352 KDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWI 411
Query: 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
++ K+ + ++ + +VD+ + G++ EA + GI + +++ + +++ +HG
Sbjct: 412 HRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHG 469
Query: 403 DVA 405
D +
Sbjct: 470 DAS 472
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD---CGVKPNAVTFTSL 326
LD ++ I + N+ +W G + E+ L M C +P+ T+ L
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162
Query: 327 FAACCHAGLVEEG----------------------LHLF------DNMKSKWGVEP--HI 356
F C L G +H+F +N + + P +
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222
Query: 357 KHYSCIVDLLGRAGHLEEA---YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
++C+++ + G E+A Y + +KPD + L+S+C++ GD+ G++
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKE 278
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 236/446 (52%), Gaps = 49/446 (10%)
Query: 65 VFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF N+ +N+LI C P +++ VF + + + D+ T + +CA
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML-ESRVEPDEVTLASVISACA--- 264
Query: 121 SLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179
SLS + +G+++H V K + N ++++ + YA I + +FD MP+R+
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAET 324
Query: 180 AMINGYC-SQSKKAKDCAF-------------------------NALVLFRDMLVDVSGV 213
+MI+GY + S KA F AL LF L+ V
Sbjct: 325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF--CLLKRESV 382
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PENDVFIGTALVDMYSKCGC 269
PT + +L + L L G H ++ K + E+D+F+G +L+DMY KCGC
Sbjct: 383 CPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGC 442
Query: 270 LDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329
++ L+F +M E++ ++W AM G A +G GNEA+ L M + G KP+ +T + +A
Sbjct: 443 VEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSA 502
Query: 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389
C HAG VEEG H F +M +GV P HY+C+VDLLGRAG LEEA + I +P++PD++
Sbjct: 503 CGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSV 562
Query: 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDV 449
+W SLL+AC VH ++ LG+ V + LL+++P S +V LSN+YA +W DV
Sbjct: 563 IWGSLLAACKVHRNITLGKYVAEKLLEVEPS--------NSGPYVLLSNMYAELGKWEDV 614
Query: 450 ESVRKQMKVKRVETEPGSSILQTTTH 475
+VRK M+ + V +PG S ++ H
Sbjct: 615 MNVRKSMRKEGVTKQPGCSWIKIQGH 640
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 29/309 (9%)
Query: 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM 172
L SC + LS +++ R +H V K GF + + LI Y+ + G++VFD+MP
Sbjct: 26 LDSCIK-SKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQ 83
Query: 173 RSSATWNAMINGYCS-----------QSKKAKD-CAFNALV------------LFRDMLV 208
R+ TWN+++ G +S +D C +N++V L ++
Sbjct: 84 RNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMM 143
Query: 209 DVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268
G + + VLS S L + G VH + K+ ++ +DV+IG+ALVDMYSKCG
Sbjct: 144 HKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFL--SDVYIGSALVDMYSKCG 201
Query: 269 CLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328
+++A +F M ++NV++W ++ T +G EA+ + M + V+P+ VT S+ +
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261
Query: 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA 388
AC ++ G + + + I + VD+ + ++EA +PI+ +
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NV 320
Query: 389 ILWRSLLSA 397
I S++S
Sbjct: 321 IAETSMISG 329
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 227/416 (54%), Gaps = 38/416 (9%)
Query: 65 VFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSL 122
+F F P++ +N +I + S G L+ F + G+ R +L
Sbjct: 278 LFREFRKPDIVAYNAMIHG------------YTSNGETELSLSLFKELMLSGARLRSSTL 325
Query: 123 STL-------WLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSS 175
+L L IH + K F+ + V+T L Y+ +I S +K+FD+ P +S
Sbjct: 326 VSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385
Query: 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235
+WNAMI+GY +Q+ +D A+ LFR+M S P T+ C+LS +QLG L
Sbjct: 386 PSWNAMISGY-TQNGLTED----AISLFREM--QKSEFSPNPVTITCILSACAQLGALSL 438
Query: 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295
G VH + T + E+ +++ TAL+ MY+KCG + A +F M +KN +TW M +G
Sbjct: 439 GKWVHDLVRSTDF--ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGY 496
Query: 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355
+HG+G EA+ + M + G+ P VTF + AC HAGLV+EG +F++M ++G EP
Sbjct: 497 GLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPS 556
Query: 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415
+KHY+C+VD+LGRAGHL+ A FI + I+P + +W +LL AC +H D L V + L
Sbjct: 557 VKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLF 616
Query: 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+L P+ +V V LSNI+++ +P +VR+ K +++ PG ++++
Sbjct: 617 ELDPD----NVGY----HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIE 664
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 148/327 (45%), Gaps = 20/327 (6%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
K T+ SH+ Q HAQ+I + ++ L +L Q + + + +F P+
Sbjct: 27 FKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQ----RLSDLGAIYYARDIFLSVQRPD 82
Query: 74 LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+FLFN L+R P S+ VFA+ L + TY FA+ + + F GR
Sbjct: 83 VFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA---GR 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
IH G +L+ + ++ Y + +KVFD+MP + + WN MI+GY
Sbjct: 140 VIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY---- 195
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
+ + ++ +FRD L++ S + TT++ +L ++L L G +H KT
Sbjct: 196 -RKNEMYVESIQVFRD-LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
+ ++ T + +YSKCG + +F R+ +++ + AM G +G+ ++ L
Sbjct: 254 SHD--YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFK 311
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLV 336
+ G + + T SL H L+
Sbjct: 312 ELMLSGARLRSSTLVSLVPVSGHLMLI 338
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 226/411 (54%), Gaps = 24/411 (5%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VF ++ + ++I R ++V +F +G+ + D +T L CAR+
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI-SPDVYTVTAVLNCCARYR 411
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
L G+++H + + F++ V+ L+ YA + + VF +M ++ +WN
Sbjct: 412 LLDE---GKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 468
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
+I GY +K+C N + ++L++ P + T+ CVL + L + G +H
Sbjct: 469 IIGGY------SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIH 522
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
GY+ + Y +D + +LVDMY+KCG L A ++F + K++++WT M G +HG
Sbjct: 523 GYIMRNGYF--SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
G EAI L + MR G++ + ++F SL AC H+GLV+EG F+ M+ + +EP ++HY+
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
CIVD+L R G L +AY FI +PI PDA +W +LL C +H DV L EKV + + +L+PE
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700
Query: 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
T +V ++NIYA AE+W V+ +RK++ + + PG S ++
Sbjct: 701 NTGY--------YVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743
Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 21/325 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR--FCSLSTLWLGRQIHV 133
L N L + S+ +F +S G+ D +T+ SC F SL ++ G Q+H
Sbjct: 166 LMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTF-----SCVSKSFSSLRSVHGGEQLHG 219
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
+ K GF V +L+ FY N+ + S +KVFD+M R +WN++INGY S K
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
L +F MLV SG++ T+V V + + L+ G VH K + E D
Sbjct: 280 -----GLSVFVQMLV--SGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE-D 331
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
F T L+DMYSKCG LD+A +F M +++V+++T+M G A G EA++L + M +
Sbjct: 332 RFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 390
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK-SKWGVEPHIKHYSCIVDLLGRAGHL 372
G+ P+ T T++ C L++EG + + +K + G + + + ++D+ + G +
Sbjct: 391 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKCGSM 448
Query: 373 EEAYNFIMGIPIKPDAILWRSLLSA 397
+EA + +K D I W +++
Sbjct: 449 QEAELVFSEMRVK-DIISWNTIIGG 472
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 12/229 (5%)
Query: 113 LGSCARFCSLS-TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171
L S + C+ S +L G+++ + GF+ + + + L Y + D+ +VFD++
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156
Query: 172 MRSSATWNAMINGYCSQSKKAKDCAFNALV-LFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230
+ + WN ++N + AK F+ + LF+ M+ SGV+ T CV S L
Sbjct: 157 IEKALFWNILMN------ELAKSGDFSGSIGLFKKMM--SSGVEMDSYTFSCVSKSFSSL 208
Query: 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290
+ G +HG++ K+ + N V G +LV Y K +D+A +F M E++V++W +
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSV--GNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 266
Query: 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339
+ G +G + + + M G++ + T S+FA C + L+ G
Sbjct: 267 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 18/227 (7%)
Query: 207 LVDVSGVKPTDTTMVC-VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
L+ VSG D +C VL + + L+ G V ++ ++ +++ +G+ L MY+
Sbjct: 83 LLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSN--LGSKLSLMYT 140
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
CG L A +F ++ + L W + +A G + +I L M GV+ ++ TF+
Sbjct: 141 NCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSC 200
Query: 326 LFAA-----CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+ + H G E LH F +KS +G + + +V + ++ A +
Sbjct: 201 VSKSFSSLRSVHGG---EQLHGF-ILKSGFGERNSVGN--SLVAFYLKNQRVDSARK-VF 253
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
+ D I W S+++ +G L EK + +Q+ +D+A
Sbjct: 254 DEMTERDVISWNSIINGYVSNG---LAEKGLSVFVQMLVSGIEIDLA 297
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/514 (30%), Positives = 259/514 (50%), Gaps = 84/514 (16%)
Query: 24 IKQIHAQLITNALKSP-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
+KQIHA ++ N L S + +LI Y + P + K H +F P++ + N ++R
Sbjct: 28 LKQIHASMVVNGLMSNLSVVGELI--YSASLSVPGALKYAHKLFDEIPKPDVSICNHVLR 85
Query: 83 CT----PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ P+ +V ++ +G+ + D +T+ F L +C++ S G H V +
Sbjct: 86 GSAQSMKPEKTVSLYTEMEKRGV-SPDRYTFTFVLKACSKLEWRSN---GFAFHGKVVRH 141
Query: 139 GFMFNVLVATTLIHF-------------------------------YASNKDISSGKKVF 167
GF+ N V LI F YA I ++F
Sbjct: 142 GFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLF 201
Query: 168 DQMPMRSSATWNAMING--YCSQSKKAKD----------------------CAF--NALV 201
D+MP + WN MI G C + A++ C + AL
Sbjct: 202 DEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALG 261
Query: 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT--- 258
+F++M +G P T++ +LS + LG LE G +H Y+ +T + + +++GT
Sbjct: 262 IFKEM--RDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSS-IYVGTPIW 318
Query: 259 -ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317
AL+DMY+KCG +D A+ +F ++++++ TW + G+A+H +I + + M+ V
Sbjct: 319 NALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVW 377
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377
PN VTF + AC H+G V+EG F M+ + +EP+IKHY C+VD+LGRAG LEEA+
Sbjct: 378 PNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFM 437
Query: 378 FIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437
F+ + I+P+AI+WR+LL AC ++G+V LG+ + LL ++ + S D+V LS
Sbjct: 438 FVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKD--------ESGDYVLLS 489
Query: 438 NIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
NIYAS +W V+ VRK RV+ G S+++
Sbjct: 490 NIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 252 bits (644), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 234/455 (51%), Gaps = 37/455 (8%)
Query: 26 QIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPN-------LFLF 77
Q HA ++ L S P LI Y S+ + F FD +
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGY-------SSSGLFDFASRLFDGAEDKDVVTWTAMI 176
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
+ +R ++++ F G+ ++ T V L + + + + GR +H +
Sbjct: 177 DGFVRNGSASEAMVYFVEMKKTGVAA-NEMTVVSVLKAAGK---VEDVRFGRSVHGLYLE 232
Query: 138 RGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCA 196
G + +V + ++L+ Y +KVFD+MP R+ TW A+I GY QS+ C
Sbjct: 233 TGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYV-QSR----CF 287
Query: 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256
+++F +ML S V P + T+ VLS + +G L G VH YM K E +
Sbjct: 288 DKGMLVFEEMLK--SDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKN--SIEINTTA 343
Query: 257 GTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
GT L+D+Y KCGCL+ A+L+F R+ EKNV TWTAM G A HG +A L +M V
Sbjct: 344 GTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHV 403
Query: 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376
PN VTF ++ +AC H GLVEEG LF +MK ++ +EP HY+C+VDL GR G LEEA
Sbjct: 404 SPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAK 463
Query: 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436
I +P++P ++W +L +C +H D LG+ +++LQP S + L
Sbjct: 464 ALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQPS--------HSGRYTLL 515
Query: 437 SNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+N+Y+ ++ W +V VRKQMK ++V PG S ++
Sbjct: 516 ANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIE 550
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 251 bits (641), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/501 (31%), Positives = 243/501 (48%), Gaps = 76/501 (15%)
Query: 22 SHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81
+ I+Q HA ++ L A + + P++ H + PN F N++I
Sbjct: 53 TEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVI 112
Query: 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137
R + P+ ++ VF + G + D +++ F L +CA FC GRQIH K
Sbjct: 113 RAYANSSTPEVALTVFREML-LGPVFPDKYSFTFVLKACAAFCGFEE---GRQIHGLFIK 168
Query: 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA----------------- 180
G + +V V TL++ Y + +KV D+MP+R + +WN+
Sbjct: 169 SGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARAL 228
Query: 181 --------------MINGYCSQS--KKAKDC----------AFNALV------------- 201
MI+GY + K+AK+ ++NA+V
Sbjct: 229 FDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVL 288
Query: 202 -LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
+F ML D S KP T+V VLS + LG L G VH Y++K + E + F+ TAL
Sbjct: 289 EVFNKMLDD-STEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDK--HGIEIEGFLATAL 345
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
VDMYSKCG +D AL +F +++V TW ++ + +++HG G +A+ + M G KPN
Sbjct: 346 VDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNG 405
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF + +AC H G++++ LF+ M S + VEP I+HY C+VDLLGR G +EEA +
Sbjct: 406 ITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVN 465
Query: 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440
IP +IL SLL AC G + E++ LL+L S + +SN+Y
Sbjct: 466 EIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLR--------DSSGYAQMSNLY 517
Query: 441 ASAERWPDVESVRKQMKVKRV 461
AS RW V R+ M+ +RV
Sbjct: 518 ASDGRWEKVIDGRRNMRAERV 538
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 251 bits (640), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 162/500 (32%), Positives = 253/500 (50%), Gaps = 59/500 (11%)
Query: 11 ALLKLKAITTPSHIKQIHAQL-ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHF 69
A+ L + T ++QIHA+L + LK L ++ + + + +
Sbjct: 9 AIALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVAL--SDHKYLDYANQILDRS 66
Query: 70 DPPNLFLFNTLIRC---TP-PQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSLST 124
+ P LF N++IR +P P+ S + +S G L D++T F + +C L
Sbjct: 67 EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT---GLRM 123
Query: 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS---------------------------- 156
G Q+H +RGF + V T LI YA
Sbjct: 124 RETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTA 183
Query: 157 ---NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213
D+ +K+F+ MP R WNAMI+GY +Q ++++ AL +F L+ + GV
Sbjct: 184 CARCGDVVFARKLFEGMPERDPIAWNAMISGY-AQVGESRE----ALNVFH--LMQLEGV 236
Query: 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273
K M+ VLS +QLG L+ G H Y+E+ + V + T LVD+Y+KCG ++ A
Sbjct: 237 KVNGVAMISVLSACTQLGALDQGRWAHSYIERN--KIKITVRLATTLVDLYAKCGDMEKA 294
Query: 274 LLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333
+ +F M EKNV TW++ G+A++G G + + L M+ GV PNAVTF S+ C
Sbjct: 295 MEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVV 354
Query: 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
G V+EG FD+M++++G+EP ++HY C+VDL RAG LE+A + I +P+KP A +W S
Sbjct: 355 GFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSS 414
Query: 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453
LL A ++ ++ LG K +L+L+ +V LSNIYA + W +V VR
Sbjct: 415 LLHASRMYKNLELGVLASKKMLELE--------TANHGAYVLLSNIYADSNDWDNVSHVR 466
Query: 454 KQMKVKRVETEPGSSILQTT 473
+ MK K V +PG S+++
Sbjct: 467 QSMKSKGVRKQPGCSVMEVN 486
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 249 bits (637), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 254/493 (51%), Gaps = 55/493 (11%)
Query: 22 SHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80
S + +IH LIT L + P +Q + + +S F+ DPPN + +N +
Sbjct: 22 SELYKIHTLLITLGLSEEEPFVSQTLS-FSALSSSGDVDYAYKFLSKLSDPPN-YGWNFV 79
Query: 81 IR----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT 136
IR P+ S+ V+ + GLL D TY F + S +R LS LG +H V
Sbjct: 80 IRGFSNSRNPEKSISVYIQMLRFGLLP-DHMTYPFLMKSSSR---LSNRKLGGSLHCSVV 135
Query: 137 KRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK------ 190
K G +++ + TLIH Y S +D +S +K+FD+MP ++ TWN++++ Y
Sbjct: 136 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARL 195
Query: 191 -------------------KAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231
K +N + D ++ + K + TMV V+ + LG
Sbjct: 196 VFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLG 255
Query: 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR--MREKNVLTWT 289
L G VH Y+ ++P V + T+L+DMY+KCG + +A +F R ++E + L W
Sbjct: 256 ALNRGKTVHRYILDV-HLPLT-VILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWN 313
Query: 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349
A+ G+A HG E+++L MR+ + P+ +TF L AAC H GLV+E H F ++K
Sbjct: 314 AIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES 373
Query: 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEK 409
G EP +HY+C+VD+L RAG +++A++FI +PIKP + +LL+ C HG++ L E
Sbjct: 374 -GAEPKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAET 432
Query: 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469
VGK L++LQP +V L+N+YA +++ S+R+ M+ K V+ G SI
Sbjct: 433 VGKKLIELQPH--------NDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSI 484
Query: 470 LQTTTHYTLDGFR 482
L LDG R
Sbjct: 485 LD------LDGTR 491
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 241/461 (52%), Gaps = 39/461 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
KQ H Q +S + LI +Y T + K VF N+ + ++IR
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARK----VFDEIPKRNIVSWTSMIRG 151
Query: 84 TPPQDSVLVFAYWVSKGLLT----------FDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
+ L A + K LL D V + +C+R + L IH
Sbjct: 152 YDLNGNALD-AVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSR---VPAKGLTESIHS 207
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKD--ISSGKKVFDQMPMRSSATWNAMINGYCSQSKK 191
V KRGF V V TL+ YA + ++ +K+FDQ+ + ++N++++ Y +QS
Sbjct: 208 FVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY-AQSGM 266
Query: 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP- 250
+ + A +FR LV V T+ VL S G L G C+H ++ M
Sbjct: 267 SNE----AFEVFR-RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIH---DQVIRMGL 318
Query: 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310
E+DV +GT+++DMY KCG ++ A F RM+ KNV +WTAM G +HG +A+ L +
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378
Query: 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370
M D GV+PN +TF S+ AAC HAGL EG F+ MK ++GVEP ++HY C+VDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
L++AY+ I + +KPD+I+W SLL+AC +H +V L E L +L +
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELD--------SSNC 490
Query: 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
++ LS+IYA A RW DVE VR MK + + PG S+L+
Sbjct: 491 GYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLE 531
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 42/235 (17%)
Query: 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSA 176
A FCS+S L +H + N+ TTL + Y D+ S
Sbjct: 8 ALFCSVSRL-------LHTERHTERQNL---TTLFNRYVDKTDVFS-------------- 43
Query: 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236
WN++I A+ AL+ F M + PT ++ C + S L + G
Sbjct: 44 -WNSVIADLARSGDSAE-----ALLAFSSM--RKLSLYPTRSSFPCAIKACSSLFDIFSG 95
Query: 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296
H + + ++D+F+ +AL+ MYS CG L++A +F + ++N+++WT+M G
Sbjct: 96 KQTH--QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYD 153
Query: 297 IHGKGNEAIRLLDSM------RDCGVKPNAVTFTSLFAACCH--AGLVEEGLHLF 343
++G +A+ L + D + +++ S+ +AC A + E +H F
Sbjct: 154 LNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSF 208
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 231/437 (52%), Gaps = 45/437 (10%)
Query: 65 VFTHFDPPNLFLFNTLI----RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFC 120
VFT ++ +N++I + P ++ +F S+ + T V L +CA+
Sbjct: 188 VFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA-SHVTMVGVLSACAK-- 244
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
+ L GRQ+ ++ + N+ +A ++ Y I K++FD M + + TW
Sbjct: 245 -IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 303
Query: 181 MINGYC-SQSKKAKDCAFN-------------------------ALVLFRDMLVDVSGVK 214
M++GY S+ +A N AL++F ++ + +K
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQ-KNMK 362
Query: 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274
T+V LS +Q+G LE G +H Y++K + + + +AL+ MYSKCG L+ +
Sbjct: 363 LNQITLVSTLSACAQVGALELGRWIHSYIKK--HGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 275 LIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334
+F+ + +++V W+AM G+A+HG GNEA+ + M++ VKPN VTFT++F AC H G
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480
Query: 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394
LV+E LF M+S +G+ P KHY+CIVD+LGR+G+LE+A FI +PI P +W +L
Sbjct: 481 LVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL 540
Query: 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454
L AC +H ++ L E LL+L+P V LSNIYA +W +V +RK
Sbjct: 541 LGACKIHANLNLAEMACTRLLELEPR--------NDGAHVLLSNIYAKLGKWENVSELRK 592
Query: 455 QMKVKRVETEPGSSILQ 471
M+V ++ EPG S ++
Sbjct: 593 HMRVTGLKKEPGCSSIE 609
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 131/465 (28%), Positives = 206/465 (44%), Gaps = 71/465 (15%)
Query: 8 RCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASP-QSTKIVHFVF 66
RC +L +LK Q H +I S P A +L+ S S + VF
Sbjct: 39 RCVSLRQLK---------QTHGHMIRTGTFSDPYSAS--KLFAMAALSSFASLEYARKVF 87
Query: 67 THFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122
PN F +NTLIR P S+ F VS+ + +T+ F + + A SL
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S LG+ +H K +V VA +LIH Y S D+ S KVF + + +WN+MI
Sbjct: 148 S---LGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMI 204
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
NG+ + K AL LF+ M + VK + TMV VLS +++ LEFG V Y
Sbjct: 205 NGFVQKGSPDK-----ALELFKKM--ESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSY 257
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI----- 297
+E+ ++ + A++DMY+KCG +++A +F M EK+ +TWT M G AI
Sbjct: 258 IEENRV--NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 315
Query: 298 --------------------------HGKGNEAIRLLDSMR-DCGVKPNAVTFTSLFAAC 330
+GK NEA+ + ++ +K N +T S +AC
Sbjct: 316 AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSAC 375
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
G +E G + +K K G+ + S ++ + + G LE++ + K D +
Sbjct: 376 AQVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFV 433
Query: 391 WRSLLSACNVHGDVALGEKVGKILLQLQPE------VTFVDVACT 429
W +++ +HG G + + ++Q VTF +V C
Sbjct: 434 WSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNGVTFTNVFCA 475
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 211/370 (57%), Gaps = 29/370 (7%)
Query: 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF 167
TYV L S R LS LG+ IH + KR + ++ LI Y + +S +VF
Sbjct: 206 TYVCVLVSSGRVGCLS---LGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVF 262
Query: 168 DQMPMRSSATWNAMING--YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225
++ + +WN+MI+G +C +SK+A D LF ++ SG+KP + VLS
Sbjct: 263 GELEKKDKVSWNSMISGLVHCERSKEAID-------LF-SLMQTSSGIKPDGHILTSVLS 314
Query: 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV 285
+ LG ++ G VH Y+ + D IGTA+VDMY+KCG ++ AL IF+ +R KNV
Sbjct: 315 ACASLGAVDHGRWVHEYILTAGI--KWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372
Query: 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345
TW A+ G+AIHG G E++R + M G KPN VTF + ACCH GLV+EG F
Sbjct: 373 FTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHK 432
Query: 346 MKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
MKS+ + + P ++HY C++DLL RAG L+EA + +P+KPD + ++LSAC G
Sbjct: 433 MKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRG-- 490
Query: 405 ALGEKVGKILLQLQPEV--TFVDVACT-SEDFVALSNIYASAERWPDVESVRKQMKVKRV 461
L++L E+ +F+D+ S +V LSNI+A+ RW DV +R+ MKVK +
Sbjct: 491 --------TLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGI 542
Query: 462 ETEPGSSILQ 471
PGSS ++
Sbjct: 543 SKVPGSSYIE 552
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/388 (30%), Positives = 192/388 (49%), Gaps = 34/388 (8%)
Query: 25 KQIHAQLITNALKSPPLYAQLIQLYCTKKA--SPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQI QLIT L L + + K A + S+ I+H + + F +NTL+
Sbjct: 23 KQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVLSS---FSYNTLLS 79
Query: 83 ----CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
C P+ ++ + +VS G + D FT+ +C +F + G+QIH VTK
Sbjct: 80 SYAVCDKPRVTIFAYKTFVSNGF-SPDMFTFPPVFKACGKFSGIRE---GKQIHGIVTKM 135
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
GF ++ V +L+HFY + + KVF +MP+R +W +I G+ +++ K+
Sbjct: 136 GFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGF-TRTGLYKE---- 190
Query: 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258
AL F M V+P T VCVL S ++G L G +HG + K + + G
Sbjct: 191 ALDTFSKM-----DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLET--GN 243
Query: 259 ALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR-DCGVK 317
AL+DMY KC L +A+ +F + +K+ ++W +M +G+ + EAI L M+ G+K
Sbjct: 244 ALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIK 303
Query: 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEPHIKHYSCIVDLLGRAGHLEE 374
P+ TS+ +AC G V+ G + + + + KW + HI + IVD+ + G++E
Sbjct: 304 PDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKW--DTHIG--TAIVDMYAKCGYIET 359
Query: 375 AYNFIMGIPIKPDAILWRSLLSACNVHG 402
A GI K + W +LL +HG
Sbjct: 360 ALEIFNGIRSK-NVFTWNALLGGLAIHG 386
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 210/360 (58%), Gaps = 19/360 (5%)
Query: 111 FALGSC-ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169
+ LGS + L ++ +G+QIH + K G +++V ++L H Y N + G+ V
Sbjct: 177 YTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRS 236
Query: 170 MPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229
MP+R+ WN +I G C L L++ ++ +SG +P T V VLS S
Sbjct: 237 MPVRNLVAWNTLIMGNAQNG-----CPETVLYLYK--MMKISGCRPNKITFVTVLSSCSD 289
Query: 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289
L + G +H E + V + ++L+ MYSKCGCL +A FS +++ + W+
Sbjct: 290 LAIRGQGQQIHA--EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWS 347
Query: 290 AMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348
+M + HG+G+EAI L ++M + ++ N V F +L AC H+GL ++GL LFD M
Sbjct: 348 SMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVE 407
Query: 349 KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGE 408
K+G +P +KHY+C+VDLLGRAG L++A I +PIK D ++W++LLSACN+H + + +
Sbjct: 408 KYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQ 467
Query: 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
+V K +LQ+ P D AC +V L+N++ASA+RW DV VRK M+ K V+ E G S
Sbjct: 468 RVFKEILQIDPN----DSAC----YVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGIS 519
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 15/262 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN--AL 200
N + + LI+ Y D+ + +KVFD+MP R TWNAMI G FN L
Sbjct: 109 NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQ-------FEFNEEGL 161
Query: 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260
LFR+M G P + T+ V S S+ L + G +HGY K Y E D+ + ++L
Sbjct: 162 SLFREM--HGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK--YGLELDLVVNSSL 217
Query: 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320
MY + G L + ++ M +N++ W + G A +G + L M+ G +PN
Sbjct: 218 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 277
Query: 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380
+TF ++ ++C + +G + K G + S ++ + + G L +A
Sbjct: 278 ITFVTVLSSCSDLAIRGQGQQIHAE-AIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 336
Query: 381 GIPIKPDAILWRSLLSACNVHG 402
D ++W S++SA HG
Sbjct: 337 ERE-DEDEVMWSSMISAYGFHG 357
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 11/230 (4%)
Query: 207 LVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266
L+ VSG ++S+ S+LG V+G M K YM N L++ Y +
Sbjct: 69 LLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSN------ILINGYVR 122
Query: 267 CGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326
G L NA +F M ++ + TW AM G+ E + L M G P+ T S+
Sbjct: 123 AGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSV 182
Query: 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386
F+ V G + K+G+E + S + + R G L++ I +P++
Sbjct: 183 FSGSAGLRSVSIGQQIH-GYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVR- 240
Query: 387 DAILWRSLLSACNVHG---DVALGEKVGKILLQLQPEVTFVDVACTSEDF 433
+ + W +L+ +G V K+ KI ++TFV V + D
Sbjct: 241 NLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 290
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/504 (32%), Positives = 258/504 (51%), Gaps = 64/504 (12%)
Query: 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALKS--PPLYAQLIQLYCTKKASPQSTKIV 62
P + F L +KA + S +KQIH +I + S L+ L++ Y + +
Sbjct: 131 PDRQTFLYL-MKASSFLSEVKQIHCHIIVSGCLSLGNYLWNSLVKFY----MELGNFGVA 185
Query: 63 HFVFTHFDPPNLFLFNTLIRCTPPQ----DSVLVFAYWVSKGLLTFDDFTYVFALGSCAR 118
VF P++ FN +I Q +++ ++ VS G+ D++T + L C
Sbjct: 186 EKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEP-DEYTVLSLLVCCGH 244
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMF--NVLVATTLIHFYASNK------------------ 158
LS + LG+ +H + +RG ++ N++++ L+ Y K
Sbjct: 245 ---LSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMR 301
Query: 159 -------------DISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRD 205
D+ + + VFDQMP R +WN+++ GY SKK D LF +
Sbjct: 302 SWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGY---SKKGCD-QRTVRELFYE 357
Query: 206 MLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265
M + V VKP TMV ++S ++ G L G VHG + + + D F+ +AL+DMY
Sbjct: 358 MTI-VEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIR--LQLKGDAFLSSALIDMYC 414
Query: 266 KCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325
KCG ++ A ++F EK+V WT+M TG+A HG G +A++L M++ GV PN VT +
Sbjct: 415 KCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLA 474
Query: 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM-GIPI 384
+ AC H+GLVEEGLH+F++MK K+G +P +HY +VDLL RAG +EEA + + +P+
Sbjct: 475 VLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPM 534
Query: 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444
+P +W S+LSAC D+ E LL+L+PE +V LSNIYA+
Sbjct: 535 RPSQSMWGSILSACRGGEDIETAELALTELLKLEPE--------KEGGYVLLSNIYATVG 586
Query: 445 RWPDVESVRKQMKVKRVETEPGSS 468
RW + R+ M+ + V+ G S
Sbjct: 587 RWGYSDKTREAMENRGVKKTAGYS 610
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 199/449 (44%), Gaps = 61/449 (13%)
Query: 11 ALLKLKAITTPSHIKQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTH 68
+L+ L+ + + KQ+ AQ++ L + P+ ++LI + + P++ + +F +
Sbjct: 37 SLVLLENCNSRNQFKQVLAQIMRFNLICDTFPM-SRLI--FFSAITYPENLDLAKLLFLN 93
Query: 69 FDP-PNLFLFNTLIRCTPPQDSVLVFAYWVS--KGLLTFDDFTYVFALGSCARFCSLSTL 125
F P PN+F++NT+I + F + S + ++ D T+++ + + + +
Sbjct: 94 FTPNPNVFVYNTMISAVSSSKNE-CFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEV--- 149
Query: 126 WLGRQIHVHVTKRGFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184
+QIH H+ G + + +L+ FY + +KVF +MP +++N MI G
Sbjct: 150 ---KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVG 206
Query: 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYME 244
Y Q + AL L+ M+ D G++P + T++ +L L + G VHG++E
Sbjct: 207 YAKQG-----FSLEALKLYFKMVSD--GIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIE 259
Query: 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304
+ + +++ + AL+DMY KC A F M++K++ +W M G G A
Sbjct: 260 RRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAA 319
Query: 305 IRLLDSM--RDC-------------------------------GVKPNAVTFTSLFAACC 331
+ D M RD VKP+ VT SL +
Sbjct: 320 QAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAA 379
Query: 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
+ G + G + + ++ S ++D+ + G +E A+ + + D LW
Sbjct: 380 NNGELSHG-RWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAF-MVFKTATEKDVALW 437
Query: 392 RSLLSACNVHGDVALGEKVGKILLQLQPE 420
S+++ HG+ G++ ++ ++Q E
Sbjct: 438 TSMITGLAFHGN---GQQALQLFGRMQEE 463
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 234/457 (51%), Gaps = 30/457 (6%)
Query: 25 KQIHAQLITNALKS-PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
+QIH I N L L L+ +Y ++ ++ K+ F N ++ ++
Sbjct: 241 RQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKM----FDSSGDRNSITWSAMVTG 296
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ ++V +F+ S G+ ++T V L +C+ C L G+Q+H + K G
Sbjct: 297 YSQNGESLEAVKLFSRMFSAGIKP-SEYTIVGVLNACSDICYLEE---GKQLHSFLLKLG 352
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
F ++ T L+ YA ++ +K FD + R A W ++I+GY S + A
Sbjct: 353 FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEE-----A 407
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
L+L+R M +G+ P D TM VL S L LE G VHG+ K + E V IG+A
Sbjct: 408 LILYRRM--KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE--VPIGSA 463
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
L MYSKCG L++ L+F R K+V++W AM +G++ +G+G+EA+ L + M G++P+
Sbjct: 464 LSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPD 523
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF ++ +AC H G VE G F+ M + G++P + HY+C+VDLL RAG L+EA FI
Sbjct: 524 DVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI 583
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
I LWR LLSAC HG LG G+ L+ L S +V LS I
Sbjct: 584 ESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSR--------ESSTYVQLSGI 635
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476
Y + R DVE V K M+ V E G S ++ Y
Sbjct: 636 YTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQY 672
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 9/277 (3%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNA 180
SL + +GRQ H V K ++ V T+L+ Y + G KVF MP R++ TW+
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWST 189
Query: 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240
M++GY ++ + + A+ +F L + +D VLS + + G +H
Sbjct: 190 MVSGYATRGRVEE-----AIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIH 244
Query: 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
K + V + ALV MYSKC L+ A +F ++N +TW+AM TG + +G+
Sbjct: 245 CITIKNGLL--GFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 302
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
EA++L M G+KP+ T + AC +EEG L + K G E H+ +
Sbjct: 303 SLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLL-KLGFERHLFATT 361
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
+VD+ +AG L +A + + D LW SL+S
Sbjct: 362 ALVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLISG 397
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 6/182 (3%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
GR +H + + G + A L++FYA ++ +F+ + + +WN++I GY
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ ++ + LFR+M + P T+ + S L G H + K
Sbjct: 93 NGGISS--SYTVMQLFREM--RAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMS 148
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
D+++ T+LV MY K G +++ L +F+ M E+N TW+ M +G A G+ EAI++
Sbjct: 149 SF--GDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKV 206
Query: 308 LD 309
+
Sbjct: 207 FN 208
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272
+ P +T++ L+ SQ L G VHG + +T + LV+ Y+KCG L
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRT--GASTCIQHANVLVNFYAKCGKLAK 67
Query: 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEA---IRLLDSMRDCGVKPNAVTFTSLFAA 329
A IF+ + K+V++W ++ TG + +G + + ++L MR + PNA T +F A
Sbjct: 68 AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKA 127
Query: 330 --CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387
+ V H S +G I + +V + +AG +E+ +P + +
Sbjct: 128 ESSLQSSTVGRQAHALVVKMSSFG---DIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERN 183
Query: 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430
W +++S G V KV + L+ + E + D T+
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTA 226
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 244 bits (624), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 238/452 (52%), Gaps = 31/452 (6%)
Query: 25 KQIHAQLIT-NALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI-- 81
KQ+H I N + + LI Y + ++ + F +FD L +N ++
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAE--ILFERHNFD---LVAWNAMMAG 491
Query: 82 --RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139
+ ++ +FA +G + DDFT +C +++ G+Q+H + K G
Sbjct: 492 YTQSHDGHKTLKLFALMHKQGERS-DDFTLATVFKTCGFLFAINQ---GKQVHAYAIKSG 547
Query: 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199
+ ++ V++ ++ Y D+S+ + FD +P+ W MI+G ++ + AF+
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEER--AFHV 605
Query: 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259
R M GV P + T+ + SS L LE G +H K ND F+GT+
Sbjct: 606 FSQMRLM-----GVLPDEFTIATLAKASSCLTALEQGRQIHANALK--LNCTNDPFVGTS 658
Query: 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319
LVDMY+KCG +D+A +F R+ N+ W AM G+A HG+G E ++L M+ G+KP+
Sbjct: 659 LVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPD 718
Query: 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379
VTF + +AC H+GLV E +M +G++P I+HYSC+ D LGRAG +++A N I
Sbjct: 719 KVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLI 778
Query: 380 MGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439
+ ++ A ++R+LL+AC V GD G++V LL+L+P S +V LSN+
Sbjct: 779 ESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP--------LDSSAYVLLSNM 830
Query: 440 YASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
YA+A +W +++ R MK +V+ +PG S ++
Sbjct: 831 YAAASKWDEMKLARTMMKGHKVKKDPGFSWIE 862
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 143/302 (47%), Gaps = 20/302 (6%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D T++ L + + SL+ LG+Q+H K G + V+ +LI+ Y + +
Sbjct: 314 DQVTFILMLATAVKVDSLA---LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
VFD M R +WN++I G + + A+ LF +L G+KP TM VL
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVE-----AVCLFMQLL--RCGLKPDQYTMTSVL 423
Query: 225 SVSSQLGL-LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283
+S L L VH + K + +D F+ TAL+D YS+ C+ A ++F R
Sbjct: 424 KAASSLPEGLSLSKQVHVHAIKINNV--SDSFVSTALIDAYSRNRCMKEAEILFER-HNF 480
Query: 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG--LH 341
+++ W AM G G++ ++L M G + + T ++F C + +G +H
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540
Query: 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH 401
+ +KS + ++ + S I+D+ + G + A IP+ PD + W +++S C +
Sbjct: 541 AY-AIKSGYDLDLWVS--SGILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGCIEN 596
Query: 402 GD 403
G+
Sbjct: 597 GE 598
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 4/204 (1%)
Query: 123 STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMI 182
S L LG+ H + + LI Y+ ++ ++VFD+MP R +WN+++
Sbjct: 53 SDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSIL 112
Query: 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242
Y S+ + A +LFR + DV V + T+ +L + G + HGY
Sbjct: 113 AAYAQSSECVVENIQQAFLLFRILRQDV--VYTSRMTLSPMLKLCLHSGYVWASESFHGY 170
Query: 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302
K + D F+ ALV++Y K G + ++F M ++V+ W M G
Sbjct: 171 ACKIGL--DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKE 228
Query: 303 EAIRLLDSMRDCGVKPNAVTFTSL 326
EAI L + G+ PN +T L
Sbjct: 229 EAIDLSSAFHSSGLNPNEITLRLL 252
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F DM+ S V+ T + +L+ + ++ L G VH K + + + +L++
Sbjct: 303 FADMVE--SDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL--DLMLTVSNSLIN 358
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY K A +F M E+++++W ++ G+A +G EA+ L + CG+KP+ T
Sbjct: 359 MYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT 418
Query: 323 FTSLFAACCHAGLVEEGLHL 342
TS+ A A + EGL L
Sbjct: 419 MTSVLKA---ASSLPEGLSL 435
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 244 bits (624), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 237/468 (50%), Gaps = 59/468 (12%)
Query: 42 YAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC---------------TPP 86
Y++LI+ + +A + I ++ + P +FL N LI P
Sbjct: 64 YSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMP 123
Query: 87 QDSVLVFAYWVS---------KGL----LTFDD------FTYVFALGSCARFCSLSTLWL 127
Q +V+ + +S K L L D +TY L SC +
Sbjct: 124 QRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV----- 178
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
R +H + K G +V V + LI +A + VFD+M + WN++I G+
Sbjct: 179 -RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
S+ AL LF+ M +G T+ VL + L LLE G H ++ K
Sbjct: 238 NSRSDV-----ALELFKRM--KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY- 289
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ D+ + ALVDMY KCG L++AL +F++M+E++V+TW+ M +G+A +G EA++L
Sbjct: 290 ---DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKL 346
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ G KPN +T + AC HAGL+E+G + F +MK +G++P +HY C++DLLG
Sbjct: 347 FERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLG 406
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
+AG L++A + + +PDA+ WR+LL AC V ++ L E K ++ L PE
Sbjct: 407 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE------- 459
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTH 475
+ + LSNIYA++++W VE +R +M+ + ++ EPG S ++
Sbjct: 460 -DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQ 506
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 154/371 (41%), Gaps = 51/371 (13%)
Query: 41 LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
L+ ++ L C+ ++ Q+ + F L L R DS+ W
Sbjct: 10 LFRPVVTLRCSYSSTDQTLLLSEFT-------RLCYQRDLPRAMKAMDSLQSHGLWA--- 59
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
D TY + C S + G I H+ G + + LI+ Y +
Sbjct: 60 ----DSATYSELIKCCI---SNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLL 112
Query: 161 SSGKKVFDQMPMRSSATWNAMINGY--CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT 218
+ ++FDQMP R+ +W MI+ Y C +K A LVL ML D V+P
Sbjct: 113 NDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK----ALELLVL---MLRD--NVRPNVY 163
Query: 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278
T VL + + + C G +++ E+DVF+ +AL+D+++K G ++AL +F
Sbjct: 164 TYSSVLRSCNGMSDVRMLHC--GIIKEGL---ESDVFVRSALIDVFAKLGEPEDALSVFD 218
Query: 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
M + + W ++ G A + + + A+ L M+ G T TS+ AC L+E
Sbjct: 219 EMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLEL 278
Query: 339 GLHLFDNMKSKWGVEPHIKHY-------SCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW 391
G+ HI Y + +VD+ + G LE+A + + D I W
Sbjct: 279 GMQ----------AHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITW 327
Query: 392 RSLLSACNVHG 402
+++S +G
Sbjct: 328 STMISGLAQNG 338
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 232/463 (50%), Gaps = 38/463 (8%)
Query: 25 KQIHAQLITNAL--KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI- 81
K++HA + N ++ + + L+ +YC K ++ +F + L+N +I
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR----KIGLWNAMIA 377
Query: 82 ---RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR 138
+ ++++L+F L + T + +C R + S IH V KR
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR---KEAIHGFVVKR 434
Query: 139 GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFN 198
G + V TL+ Y+ I ++F +M R TWN MI GY +
Sbjct: 435 GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE-----D 489
Query: 199 ALVLFRDML---------VDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
AL+L M +KP T++ +L + L L G +H Y K
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL- 548
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309
DV +G+ALVDMY+KCGCL + +F ++ +KNV+TW + +HG G EAI LL
Sbjct: 549 -ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 607
Query: 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
M GVKPN VTF S+FAAC H+G+V+EGL +F MK +GVEP HY+C+VDLLGRA
Sbjct: 608 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 667
Query: 370 GHLEEAYNFIMGIPIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428
G ++EAY + +P A W SLL A +H ++ +GE + L+QL+P V
Sbjct: 668 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV------- 720
Query: 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
+ +V L+NIY+SA W VR+ MK + V EPG S ++
Sbjct: 721 -ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 39/388 (10%)
Query: 25 KQIHAQL--ITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIR 82
KQIHA + + S + L+ LY +K V+ VF N +N+LI
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLY--RKCGDFGA--VYKVFDRISERNQVSWNSLI- 171
Query: 83 CTPPQDSVLVFAYWVSKGLLTF----------DDFTYVFALGSCARFCSLSTLWLGRQIH 132
S+ F W L F FT V + +C+ L +G+Q+H
Sbjct: 172 -----SSLCSFEKW-EMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVH 225
Query: 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKA 192
+ ++G + N + TL+ Y ++S K + R TWN +++ C +
Sbjct: 226 AYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQ-- 282
Query: 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252
AL R+M+++ GV+P + T+ VL S L +L G +H Y K + EN
Sbjct: 283 ---LLEALEYLREMVLE--GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 337
Query: 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312
F+G+ALVDMY C + + +F M ++ + W AM G + + EA+ L M
Sbjct: 338 S-FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGME 396
Query: 313 D-CGVKPNAVTFTSLFAACCHAGLV--EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369
+ G+ N+ T + AC +G +E +H F K G++ + ++D+ R
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF---VVKRGLDRDRFVQNTLMDMYSRL 453
Query: 370 GHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G ++ A I G D + W ++++
Sbjct: 454 GKIDIAMR-IFGKMEDRDLVTWNTMITG 480
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 18/271 (6%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
L + +R +++VL + + G+ D++ + L + A L + LG+QIH HV
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKP-DNYAFPALLKAVA---DLQDMELGKQIHAHV 123
Query: 136 TKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKD 194
K G+ + V VA TL++ Y D + KVFD++ R+ +WN++I+ CS K
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM- 182
Query: 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE---FGACVHGYMEKTFYMPE 251
AL FR ML + V+P+ T+V V++ S L + E G VH Y E
Sbjct: 183 ----ALEAFRCMLDE--NVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---GLRKGE 233
Query: 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311
+ FI LV MY K G L ++ ++ ++++TW + + + + + EA+ L M
Sbjct: 234 LNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREM 293
Query: 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342
GV+P+ T +S+ AC H ++ G L
Sbjct: 294 VLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 102/212 (48%), Gaps = 7/212 (3%)
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+SK + A++ + DM+V G+KP + +L + L +E G +H ++ K
Sbjct: 70 RSKVRSNLLREAVLTYVDMIV--LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
Y ++ V + LV++Y KCG +F R+ E+N ++W ++ + + K A+
Sbjct: 128 YGVDS-VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA 186
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY--SCIVDL 365
M D V+P++ T S+ AC + + EGL + + + + + + + +V +
Sbjct: 187 FRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAM 245
Query: 366 LGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397
G+ G L + ++G D + W ++LS+
Sbjct: 246 YGKLGKLASS-KVLLGSFGGRDLVTWNTVLSS 276
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 158/465 (33%), Positives = 229/465 (49%), Gaps = 70/465 (15%)
Query: 60 KIVHFVFTHF------------DPPNLFLFNTLIRCTPPQDSVLVFAYWV---------- 97
KI+H + +HF + LFLFN L+RC ++ L AY++
Sbjct: 51 KIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPL-HAYFLYDQLQRLHFL 109
Query: 98 ---SKGLLTFDDFTYVFAL--GSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIH 152
+K L FD FTY+F L S RF SL +H K GF +V V T L+
Sbjct: 110 SDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLG---IGLHGLTLKLGFESHVYVQTALVG 166
Query: 153 FYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAF--------------- 197
Y ++ KVFD+MP R+ TWN MI G + K F
Sbjct: 167 MYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTI 226
Query: 198 -----------NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246
A++LF M V +KP + T++ +L LG L+ VH Y+ K
Sbjct: 227 IDGYARVDKPKEAILLFSRM-VACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKR 285
Query: 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM--REKNVLTWTAMATGMAIHGKGNEA 304
++P D+ + +L+D Y+KCGC+ +A F + KN+++WT M + AIHG G EA
Sbjct: 286 GFVP-CDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEA 344
Query: 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG-LHLFDNMKSKWGVEPHIKHYSCIV 363
+ + M G+KPN VT S+ AC H GL EE L F+ M +++ + P +KHY C+V
Sbjct: 345 VSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLV 404
Query: 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423
D+L R G LEEA + IPI+ A++WR LL AC+V+ D L E+V + L++L+
Sbjct: 405 DMLRRKGRLEEAEKIALEIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLMELE----- 459
Query: 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSS 468
D+V +SNI+ R+ D + RKQM V+ V PG S
Sbjct: 460 ---RSHGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHS 501
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/406 (34%), Positives = 215/406 (52%), Gaps = 23/406 (5%)
Query: 72 PNLFLFNTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWL 127
P FL+N + IR P D++ V+ V +L D ++ + + + + L
Sbjct: 80 PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLP-DRYSLPIVIKAAVQIHDFT---L 135
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G+++H + GF+ + + I Y + + +KVFD+ P R +WNA+I G
Sbjct: 136 GKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNH 195
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ A A+ +F DM SG++P D TMV V + LG L +H + +
Sbjct: 196 AGR-----ANEAVEMFVDM--KRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAK 248
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
++D+ + +L+DMY KCG +D A IF MR++NV++W++M G A +G EA+
Sbjct: 249 TEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALEC 308
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
MR+ GV+PN +TF + +AC H GLVEEG F MKS++ +EP + HY CIVDLL
Sbjct: 309 FRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLS 368
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
R G L+EA + +P+KP+ ++W L+ C GDV + E V +++L+P V
Sbjct: 369 RDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAEWVAPYMVELEPWNDGV--- 425
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+V L+N+YA W DVE VRK MK K+V P S TT
Sbjct: 426 -----YVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSYASTT 466
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/446 (33%), Positives = 240/446 (53%), Gaps = 32/446 (7%)
Query: 19 TTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
+ P +K+IHA ++ + L QL++ + + VF P +FL+
Sbjct: 22 SKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQ----VFDEMHKPRIFLW 77
Query: 78 NTL----IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHV 133
NTL +R P +S+L++ G+ D+FTY F + + ++ S G +H
Sbjct: 78 NTLFKGYVRNQLPFESLLLYKKMRDLGVRP-DEFTYPFVVKAISQLGDFSC---GFALHA 133
Query: 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAK 193
HV K GF +VAT L+ Y ++SS + +F+ M ++ WNA + C Q+ +
Sbjct: 134 HVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFL-AVCVQTGNSA 192
Query: 194 DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253
AL F M D V+ T+V +LS QLG LE G ++ K + +
Sbjct: 193 I----ALEYFNKMCAD--AVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKE--EIDCN 244
Query: 254 VFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313
+ + A +DM+ KCG + A ++F M+++NV++W+ M G A++G EA+ L +M++
Sbjct: 245 IIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQN 304
Query: 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM--KSKWGVEPHIKHYSCIVDLLGRAGH 371
G++PN VTF + +AC HAGLV EG F M + +EP +HY+C+VDLLGR+G
Sbjct: 305 EGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGL 364
Query: 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431
LEEAY FI +P++PD +W +LL AC VH D+ LG+KV +L++ P++
Sbjct: 365 LEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDI--------GS 416
Query: 432 DFVALSNIYASAERWPDVESVRKQMK 457
V LSNIYA+A +W V+ VR +M+
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMR 442
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 196/354 (55%), Gaps = 18/354 (5%)
Query: 121 SLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA---SNKDISSGKKVFDQMPMRSSAT 177
SL L GRQ H + K GF N V + LI FY+ + +KVF ++
Sbjct: 252 SLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVV 311
Query: 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237
WN MI+GY + +++ A+ FR M G +P D + VCV S S L
Sbjct: 312 WNTMISGYSMNEELSEE----AVKSFRQM--QRIGHRPDDCSFVCVTSACSNLSSPSQCK 365
Query: 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAI 297
+HG K+ ++P N + + AL+ +Y K G L +A +F RM E N +++ M G A
Sbjct: 366 QIHGLAIKS-HIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQ 424
Query: 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK 357
HG G EA+ L M D G+ PN +TF ++ +AC H G V+EG F+ MK + +EP +
Sbjct: 425 HGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAE 484
Query: 358 HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417
HYSC++DLLGRAG LEEA FI +P KP ++ W +LL AC H ++AL E+ L+ +
Sbjct: 485 HYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVM 544
Query: 418 QPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ 471
QP +A T +V L+N+YA A +W ++ SVRK M+ KR+ +PG S ++
Sbjct: 545 QP------LAATP--YVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIE 590
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 118/295 (40%), Gaps = 49/295 (16%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
NV ++ YA + I +++FD++P + ++N +I+GY + F A+VL
Sbjct: 73 NVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARE-----TFAAMVL 127
Query: 203 FRDML---VDVSGVKPTDTTMVCVLSVS--SQLGLLEFGACVHGYMEKTFYMPENDVFIG 257
F+ M +V G + C V QL Y +
Sbjct: 128 FKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSS-----------VN 176
Query: 258 TALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316
A V YSK G L A+ +F M E ++ ++W +M H +G +A+ L M G
Sbjct: 177 NAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGF 236
Query: 317 KPNAVTFTSLFAACC-----------HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365
K + T S+ A H L++ G H H+ S ++D
Sbjct: 237 KIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQ----------NSHVG--SGLIDF 284
Query: 366 LGRAGHLEEAYNF--IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
+ G + Y+ + + PD ++W +++S +++ + L E+ K Q+Q
Sbjct: 285 YSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEE--LSEEAVKSFRQMQ 337
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 11/183 (6%)
Query: 242 YMEKTFYMPEN-DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK 300
Y FY E +VF +V Y+K + A +F + + + +++ + +G A +
Sbjct: 61 YARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARE 120
Query: 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS 360
A+ L MR G + + T + L AACC + + LH F G + + +
Sbjct: 121 TFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFS---VSGGFDSYSSVNN 177
Query: 361 CIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420
V + G L EA + G+ D + W S++ A H K G L L E
Sbjct: 178 AFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQH-------KEGAKALALYKE 230
Query: 421 VTF 423
+ F
Sbjct: 231 MIF 233
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 19/357 (5%)
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187
G++IH +V ++G +V + ++L+ YA + I ++VF ++ R +WN+++ GY
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ + AL LFR M+ + VKP V+ + L L G +HGY+ +
Sbjct: 321 NGRYNE-----ALRLFRQMVT--AKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGG 373
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
+ +++FI +ALVDMYSKCG + A IF RM + ++WTA+ G A+HG G+EA+ L
Sbjct: 374 F--GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367
+ M+ GVKPN V F ++ AC H GLV+E F++M +G+ ++HY+ + DLLG
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491
Query: 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427
RAG LEEAYNFI + ++P +W +LLS+C+VH ++ L EKV + + + E
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE------- 544
Query: 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQ--TTTHYTLDGFR 482
+V + N+YAS RW ++ +R +M+ K + +P S ++ TH + G R
Sbjct: 545 -NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/432 (25%), Positives = 188/432 (43%), Gaps = 73/432 (16%)
Query: 18 ITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLF 77
I + S KQ+HAQ I S + +I +Y K ++ +F P + +
Sbjct: 18 IKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALL----LFKTLKSPPVLAW 73
Query: 78 NTLIRCTPPQDSVLVFAYWVSKGLLTF----------DDFTYVFALGSCARFCSLSTLWL 127
++IRC Q SK L +F D + L SC L
Sbjct: 74 KSVIRCFTDQS-------LFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLR---F 123
Query: 128 GRQIHVHVTKRGFMFNVLVATTLIHFYAS----NKDISSGKKVFDQMPMRSS-------- 175
G +H + + G ++ L++ YA IS G VFD+MP R+S
Sbjct: 124 GESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVG-NVFDEMPQRTSNSGDEDVK 182
Query: 176 -------------------------ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV 210
++N +I GY +QS +D AL + R+M
Sbjct: 183 AETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGY-AQSGMYED----ALRMVREM--GT 235
Query: 211 SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270
+ +KP T+ VL + S+ + G +HGY+ + ++DV+IG++LVDMY+K +
Sbjct: 236 TDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGI--DSDVYIGSSLVDMYAKSARI 293
Query: 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330
+++ +FSR+ ++ ++W ++ G +G+ NEA+RL M VKP AV F+S+ AC
Sbjct: 294 EDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPAC 353
Query: 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL 390
H + G L + + G +I S +VD+ + G+++ A + + D +
Sbjct: 354 AHLATLHLGKQLHGYV-LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVS 411
Query: 391 WRSLLSACNVHG 402
W +++ +HG
Sbjct: 412 WTAIIMGHALHG 423
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 126/277 (45%), Gaps = 16/277 (5%)
Query: 25 KQIHAQLITNALKSPP-LYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC 83
K+IH +I + S + + L+ +Y S + VF+ + +N+L+
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSER----VFSRLYCRDGISWNSLV-A 316
Query: 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKRGFMF 142
Q+ A + + ++T A S C+ L+TL LG+Q+H +V + GF
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGS 376
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
N+ +A+ L+ Y+ +I + +K+FD+M + +W A+I G+ A+ L
Sbjct: 377 NIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH-----GHEAVSL 431
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
F +M GVKP V VL+ S +GL++ M K + + + ++ A+ D
Sbjct: 432 FEEM--KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQ-ELEHYAAVAD 488
Query: 263 MYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
+ + G L+ A S+M E W+ + + ++H
Sbjct: 489 LLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH 525
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 194/331 (58%), Gaps = 17/331 (5%)
Query: 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVL 202
+V+ T+++ Y ++ + FDQMP+R +W MI+GY C +L +
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAG-----CFNESLEI 355
Query: 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVD 262
FR+M +G+ P + TMV VL+ + LG LE G + Y++K +NDV +G AL+D
Sbjct: 356 FREM--QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN--KIKNDVVVGNALID 411
Query: 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322
MY KCGC + A +F M +++ TWTAM G+A +G+G EAI++ M+D ++P+ +T
Sbjct: 412 MYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382
+ + +AC H+G+V++ F M+S +EP + HY C+VD+LGRAG ++EAY + +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442
P+ P++I+W +LL A +H D + E K +L+L+P+ V + L NIYA
Sbjct: 532 PMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV--------YALLCNIYAG 583
Query: 443 AERWPDVESVRKQMKVKRVETEPGSSILQTT 473
+RW D+ VR+++ ++ PG S+++
Sbjct: 584 CKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 55/440 (12%)
Query: 15 LKAITTPSHIKQIHAQLITNALKSPPLY-AQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
L T KQ+H+Q IT + P + +L +C++ S + +F P+
Sbjct: 41 LGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVS--YAYKLFVKIPEPD 98
Query: 74 LFLFNTLIRCTPPQD----SVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+ ++N +I+ D V ++ + +G+ T D T+ F L R L G+
Sbjct: 99 VVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGV-TPDSHTFPFLLNGLKR--DGGALACGK 155
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS 189
++H HV K G N+ V L+ Y+ + + VFD+ +WN MI+GY
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY--NR 213
Query: 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249
K + + LV LV PT T++ VLS S++ + VH Y+ +
Sbjct: 214 MKEYEESIELLVEMERNLVS-----PTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTE 268
Query: 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGK--------- 300
P + + ALV+ Y+ CG +D A+ IF M+ ++V++WT++ G G
Sbjct: 269 PS--LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFD 326
Query: 301 ----------------------GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEE 338
NE++ + M+ G+ P+ T S+ AC H G +E
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEI 386
Query: 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSAC 398
G K ++ + + ++D+ + G E+A + + D W +++
Sbjct: 387 G-EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD-QRDKFTWTAMVVGL 444
Query: 399 NVHGDVALGEKVGKILLQLQ 418
+G G++ K+ Q+Q
Sbjct: 445 ANNGQ---GQEAIKVFFQMQ 461
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHV 135
+ + +R +S+ +F S G++ D+FT V L +CA L +L +G I ++
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIP-DEFTMVSVLTACAH---LGSLEIGEWIKTYI 394
Query: 136 TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC 195
K +V+V LI Y +KVF M R TW AM+ G + + +
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE-- 452
Query: 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255
A +DM ++P D T + VLS + G+++ M + + V
Sbjct: 453 AIKVFFQMQDM-----SIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507
Query: 256 IGTALVDMYSKCGCLDNALLIFSRM-REKNVLTWTAMATGMAIH 298
G +VDM + G + A I +M N + W A+ +H
Sbjct: 508 YG-CMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLH 550
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 239 bits (610), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 212/370 (57%), Gaps = 18/370 (4%)
Query: 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK 164
D+ T V + +CA+ S+ LGRQ+H+ + GF N+ + LI Y+ ++ +
Sbjct: 265 DESTMVTVVSACAQSGSIE---LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321
Query: 165 KVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224
+F+++P + +WN +I GY + + AL+LF++ML SG P D TM+ +L
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKE-----ALLLFQEMLR--SGETPNDVTMLSIL 374
Query: 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284
+ LG ++ G +H Y++K N + T+L+DMY+KCG ++ A +F+ + K+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434
Query: 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344
+ +W AM G A+HG+ + + L MR G++P+ +TF L +AC H+G+++ G H+F
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFR 494
Query: 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDV 404
M + + P ++HY C++DLLG +G +EA I + ++PD ++W SLL AC +HG+V
Sbjct: 495 TMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNV 554
Query: 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464
LGE + L++++PE +V LSNIYASA RW +V R + K ++
Sbjct: 555 ELGESFAENLIKIEPE--------NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKV 606
Query: 465 PGSSILQTTT 474
PG S ++ +
Sbjct: 607 PGCSSIEIDS 616
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 162/364 (44%), Gaps = 35/364 (9%)
Query: 46 IQLYCTKKASPQSTKIVHFVFTHFDPP-----NLFLFNTLIRCTPPQDSVLVFAYWVSKG 100
+ L C+ P S+ HF+ + DPP N + L C Q ++ A + G
Sbjct: 1 MMLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIG 60
Query: 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160
L + +AL FC LS + G + V K N+L+ T+ +A + D
Sbjct: 61 LHNTN-----YALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115
Query: 161 SSGKKVFDQMP----MRSSATWNAMINGYCSQSKKAKDCA-FNALVLFRDMLVDVSGVKP 215
S K++ M + +S T+ ++ C++SK K+ + VL +D+
Sbjct: 116 VSALKLYVCMISLGLLPNSYTFPFVLKS-CAKSKAFKEGQQIHGHVLKLGCDLDL----- 169
Query: 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275
++S+ Q G LE H +K+ P DV TAL+ Y+ G ++NA
Sbjct: 170 --YVHTSLISMYVQNGRLEDA---HKVFDKS---PHRDVVSYTALIKGYASRGYIENAQK 221
Query: 276 IFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335
+F + K+V++W AM +G A G EA+ L M V+P+ T ++ +AC +G
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 336 VEEG--LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393
+E G +HL+ + G ++K + ++DL + G LE A +P K D I W +
Sbjct: 282 IELGRQVHLWID---DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYK-DVISWNT 337
Query: 394 LLSA 397
L+
Sbjct: 338 LIGG 341
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 239 bits (609), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 247/489 (50%), Gaps = 52/489 (10%)
Query: 14 KLKAITTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKA---SPQSTKIVHFVFTHF 69
KL + IKQIH ++ L +S + +LI+ TK P + +++ V F
Sbjct: 55 KLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTL-TKLGVPMDPYARRVIEPV--QF 111
Query: 70 DPPNLFLFNTLIRCTPPQ---DSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLW 126
P FL+ +IR + D + + K +T FT+ L +C ++ L
Sbjct: 112 RNP--FLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG---TMKDLN 166
Query: 127 LGRQIHVHVTK-RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGY 185
LGRQ H + RGF F V V T+I Y + I +KVFD+MP R +W +I Y
Sbjct: 167 LGRQFHAQTFRLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAY 225
Query: 186 CS-----------QSKKAKD-CAFNALVL-------------FRDMLVDVSGVKPTDTTM 220
+S KD A+ A+V + D + + SG++ + T+
Sbjct: 226 ARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRM-EKSGIRADEVTV 284
Query: 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280
+S +QLG ++ +K+ Y P + V IG+AL+DMYSKCG ++ A+ +F M
Sbjct: 285 AGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Query: 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEG 339
KNV T+++M G+A HG+ EA+ L M +KPN VTF AC H+GLV++G
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404
Query: 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399
+FD+M +GV+P HY+C+VDLLGR G L+EA I + ++P +W +LL AC
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACR 464
Query: 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459
+H + + E + L +L+P++ +++ LSN+YASA W V VRK +K K
Sbjct: 465 IHNNPEIAEIAAEHLFELEPDII--------GNYILLSNVYASAGDWGGVLRVRKLIKEK 516
Query: 460 RVETEPGSS 468
++ P S
Sbjct: 517 GLKKTPAVS 525
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/364 (36%), Positives = 198/364 (54%), Gaps = 20/364 (5%)
Query: 119 FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATW 178
F L L GR IH V K G + +L YA +++ K +FD+M + W
Sbjct: 232 FTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILW 291
Query: 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238
NAMI+GY A A+ +F +M+ V+P ++ +S +Q+G LE
Sbjct: 292 NAMISGYAKNGY-----AREAIDMFHEMIN--KDVRPDTISITSAISACAQVGSLEQARS 344
Query: 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH 298
++ Y+ ++ Y +DVFI +AL+DM++KCG ++ A L+F R +++V+ W+AM G +H
Sbjct: 345 MYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358
G+ EAI L +M GV PN VTF L AC H+G+V EG F+ M + P +H
Sbjct: 403 GRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH-KINPQQQH 461
Query: 359 YSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418
Y+C++DLLGRAGHL++AY I +P++P +W +LLSAC H V LGE + L +
Sbjct: 462 YACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSID 521
Query: 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478
P T +V LSN+YA+A W V VR +MK K + + G S ++ L
Sbjct: 522 PSNT--------GHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGR--L 571
Query: 479 DGFR 482
+ FR
Sbjct: 572 EAFR 575
Score = 145 bits (367), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 195/396 (49%), Gaps = 28/396 (7%)
Query: 15 LKAITTPSHIKQIHAQLITNALK-SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN 73
+ + T + +KQIHA+L+ L+ S L +LI +S VF P
Sbjct: 28 IDSATHKAQLKQIHARLLVLGLQFSGFLITKLIH----ASSSFGDITFARQVFDDLPRPQ 83
Query: 74 LFLFNTLIRCTPP----QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129
+F +N +IR QD++L+++ + ++ D FT+ L +C+ LS L +GR
Sbjct: 84 IFPWNAIIRGYSRNNHFQDALLMYSN-MQLARVSPDSFTFPHLLKACS---GLSHLQMGR 139
Query: 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNAMINGYCS 187
+H V + GF +V V LI YA + + S + VF+ +P+ R+ +W A+++ Y
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQ 199
Query: 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247
+ AL +F M VKP +V VL+ + L L+ G +H + K
Sbjct: 200 NGE-----PMEALEIFSQM--RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307
E D+ I +L MY+KCG + A ++F +M+ N++ W AM +G A +G EAI +
Sbjct: 253 LEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310
Query: 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM-KSKWGVEPHIKHYSCIVDLL 366
M + V+P+ ++ TS +AC G +E+ +++ + +S + + I S ++D+
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFIS--SALIDMF 368
Query: 367 GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHG 402
+ G +E A + + D ++W +++ +HG
Sbjct: 369 AKCGSVEGA-RLVFDRTLDRDVVVWSAMIVGYGLHG 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,591,371
Number of Sequences: 539616
Number of extensions: 7019611
Number of successful extensions: 23443
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 17814
Number of HSP's gapped (non-prelim): 1806
length of query: 482
length of database: 191,569,459
effective HSP length: 121
effective length of query: 361
effective length of database: 126,275,923
effective search space: 45585608203
effective search space used: 45585608203
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)