Query 011587
Match_columns 482
No_of_seqs 480 out of 2957
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.7E-71 8.1E-76 559.5 49.6 450 4-477 120-575 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 6.5E-68 1.4E-72 548.4 50.5 449 3-477 284-738 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-65 5.7E-70 529.0 46.4 443 3-472 183-632 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1E-63 2.2E-68 508.2 46.7 450 3-474 366-856 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.9E-62 4.1E-67 499.0 47.8 438 3-466 433-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.2E-56 9.2E-61 449.9 38.7 382 71-474 84-471 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-26 1E-30 240.9 46.1 345 84-457 547-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-25 8.8E-30 233.8 45.8 410 19-462 445-869 (899)
9 PRK11788 tetratricopeptide rep 99.9 6.4E-21 1.4E-25 181.5 30.1 296 152-468 43-356 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 176.8 30.2 288 117-419 46-349 (389)
11 PRK11447 cellulose synthase su 99.9 2.1E-18 4.6E-23 184.0 46.0 404 19-457 283-738 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.6E-19 3.4E-24 165.3 29.8 347 84-460 130-486 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-18 2.9E-23 174.4 38.3 353 84-459 141-571 (615)
14 PRK11447 cellulose synthase su 99.9 1.5E-17 3.2E-22 177.6 44.8 415 13-458 121-699 (1157)
15 KOG4626 O-linked N-acetylgluco 99.9 1.3E-18 2.8E-23 159.4 27.9 367 40-441 116-501 (966)
16 PRK15174 Vi polysaccharide exp 99.8 1.9E-17 4.1E-22 165.6 36.3 316 84-419 56-383 (656)
17 PRK15174 Vi polysaccharide exp 99.8 2.9E-17 6.3E-22 164.2 36.3 329 105-461 41-383 (656)
18 PRK10049 pgaA outer membrane p 99.8 3.7E-16 8E-21 159.7 43.3 395 7-419 18-458 (765)
19 PRK10049 pgaA outer membrane p 99.8 5.5E-16 1.2E-20 158.4 40.7 395 37-459 12-456 (765)
20 PRK09782 bacteriophage N4 rece 99.8 1.5E-14 3.2E-19 148.4 48.8 214 231-460 490-707 (987)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-15 3E-20 152.7 38.8 248 158-419 308-573 (615)
22 PRK14574 hmsH outer membrane p 99.8 3.6E-14 7.9E-19 142.7 41.9 412 19-457 48-511 (822)
23 KOG4422 Uncharacterized conser 99.7 2.5E-13 5.3E-18 119.9 37.9 422 9-463 118-594 (625)
24 PRK14574 hmsH outer membrane p 99.7 2.3E-13 5.1E-18 136.9 38.7 385 49-459 43-479 (822)
25 PRK09782 bacteriophage N4 rece 99.7 9.8E-13 2.1E-17 135.2 41.2 382 47-464 320-745 (987)
26 KOG4422 Uncharacterized conser 99.6 9.4E-12 2E-16 110.1 33.7 341 62-419 196-592 (625)
27 KOG0495 HAT repeat protein [RN 99.6 5.1E-11 1.1E-15 110.9 40.0 357 84-473 530-892 (913)
28 KOG1155 Anaphase-promoting com 99.6 3.4E-12 7.3E-17 114.0 31.1 376 35-460 159-554 (559)
29 PF13429 TPR_15: Tetratricopep 99.6 2.1E-15 4.5E-20 136.2 11.3 256 181-457 14-275 (280)
30 KOG2003 TPR repeat-containing 99.6 1E-11 2.2E-16 110.7 31.7 272 153-445 428-709 (840)
31 KOG2002 TPR-containing nuclear 99.6 2.4E-12 5.2E-17 124.8 29.4 398 37-459 267-745 (1018)
32 KOG2002 TPR-containing nuclear 99.6 2.7E-11 5.9E-16 117.7 34.6 422 19-476 178-690 (1018)
33 PRK10747 putative protoheme IX 99.6 1.1E-11 2.5E-16 117.1 31.8 291 111-418 87-391 (398)
34 KOG2003 TPR repeat-containing 99.6 1.9E-11 4E-16 109.0 30.5 252 193-459 432-689 (840)
35 PRK10747 putative protoheme IX 99.6 3.2E-12 6.9E-17 120.9 27.6 276 84-382 98-387 (398)
36 KOG1915 Cell cycle control pro 99.6 2.5E-11 5.4E-16 108.8 30.7 322 125-466 157-507 (677)
37 TIGR00540 hemY_coli hemY prote 99.6 2E-11 4.3E-16 116.1 32.4 297 108-417 84-399 (409)
38 KOG1126 DNA-binding cell divis 99.6 6.4E-13 1.4E-17 124.0 20.2 277 125-419 335-622 (638)
39 PF13429 TPR_15: Tetratricopep 99.5 5E-14 1.1E-18 127.2 12.6 211 125-347 60-275 (280)
40 COG2956 Predicted N-acetylgluc 99.5 7E-11 1.5E-15 101.0 29.3 286 76-382 42-344 (389)
41 KOG2076 RNA polymerase III tra 99.5 5.2E-11 1.1E-15 114.9 31.8 312 125-457 155-510 (895)
42 KOG0547 Translocase of outer m 99.5 3.4E-11 7.4E-16 108.4 28.5 351 84-457 129-564 (606)
43 KOG1126 DNA-binding cell divis 99.5 2.4E-12 5.1E-17 120.2 21.9 280 159-461 334-622 (638)
44 KOG2076 RNA polymerase III tra 99.5 4E-10 8.6E-15 109.0 36.0 417 19-459 153-695 (895)
45 KOG1155 Anaphase-promoting com 99.5 2.3E-10 5E-15 102.5 30.6 252 193-458 240-494 (559)
46 KOG1915 Cell cycle control pro 99.5 9.1E-10 2E-14 99.0 33.6 410 19-461 87-538 (677)
47 KOG0495 HAT repeat protein [RN 99.5 3.1E-09 6.8E-14 99.3 37.0 258 176-457 517-780 (913)
48 TIGR00540 hemY_coli hemY prote 99.5 5.9E-11 1.3E-15 112.9 27.0 282 84-382 98-396 (409)
49 COG3071 HemY Uncharacterized e 99.4 4.5E-10 9.9E-15 99.1 27.6 283 122-419 97-392 (400)
50 COG3071 HemY Uncharacterized e 99.4 1.2E-09 2.7E-14 96.4 27.9 282 157-463 97-394 (400)
51 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.6E-15 101.4 23.3 197 253-458 30-231 (234)
52 COG2956 Predicted N-acetylgluc 99.4 8.3E-10 1.8E-14 94.6 25.7 295 107-419 37-349 (389)
53 PRK12370 invasion protein regu 99.4 4.6E-10 9.9E-15 111.0 26.9 267 174-460 255-536 (553)
54 PF13041 PPR_2: PPR repeat fam 99.4 2.9E-12 6.3E-17 81.4 6.7 50 283-332 1-50 (50)
55 TIGR02521 type_IV_pilW type IV 99.3 8.6E-10 1.9E-14 96.8 24.2 199 215-418 29-233 (234)
56 KOG1840 Kinesin light chain [C 99.3 2E-09 4.2E-14 101.8 27.1 240 216-457 198-477 (508)
57 KOG4318 Bicoid mRNA stability 99.3 5E-10 1.1E-14 108.0 22.9 263 91-371 11-286 (1088)
58 KOG0547 Translocase of outer m 99.3 1E-08 2.2E-13 92.8 27.1 219 193-419 339-568 (606)
59 KOG1173 Anaphase-promoting com 99.2 2.2E-08 4.8E-13 92.3 27.8 262 174-457 243-516 (611)
60 PRK12370 invasion protein regu 99.2 3E-09 6.5E-14 105.2 24.0 226 216-458 255-501 (553)
61 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 4.9E-16 77.3 5.6 50 173-229 1-50 (50)
62 KOG4162 Predicted calmodulin-b 99.2 1.4E-07 2.9E-12 90.4 32.3 401 30-460 313-784 (799)
63 KOG1174 Anaphase-promoting com 99.2 3.6E-07 7.8E-12 81.3 32.4 260 174-457 231-498 (564)
64 KOG4318 Bicoid mRNA stability 99.2 6.1E-10 1.3E-14 107.3 16.5 243 201-469 11-275 (1088)
65 KOG1129 TPR repeat-containing 99.2 1.3E-09 2.8E-14 93.5 16.2 230 177-420 225-461 (478)
66 KOG1173 Anaphase-promoting com 99.2 3.2E-08 7E-13 91.3 26.0 268 140-419 240-520 (611)
67 KOG2376 Signal recognition par 99.2 7.9E-07 1.7E-11 82.8 34.1 401 19-456 26-517 (652)
68 KOG1129 TPR repeat-containing 99.2 2.9E-09 6.2E-14 91.4 17.0 231 215-460 221-459 (478)
69 PRK11189 lipoprotein NlpI; Pro 99.1 9.4E-08 2E-12 86.6 26.7 224 193-435 39-275 (296)
70 KOG1156 N-terminal acetyltrans 99.1 1.1E-06 2.3E-11 82.8 33.4 423 7-461 8-470 (700)
71 KOG1174 Anaphase-promoting com 99.1 3.4E-07 7.3E-12 81.5 28.4 299 105-419 193-502 (564)
72 KOG2047 mRNA splicing factor [ 99.1 2.4E-06 5.3E-11 80.4 35.2 386 38-457 167-685 (835)
73 PF12569 NARP1: NMDA receptor- 99.1 7.9E-08 1.7E-12 92.2 25.5 252 193-461 17-293 (517)
74 PF12569 NARP1: NMDA receptor- 99.1 7.2E-07 1.6E-11 85.7 31.8 283 49-348 13-333 (517)
75 KOG1840 Kinesin light chain [C 99.1 3E-08 6.5E-13 93.9 21.8 235 177-416 201-478 (508)
76 PRK11189 lipoprotein NlpI; Pro 99.1 3.8E-08 8.1E-13 89.2 21.3 223 231-462 40-268 (296)
77 COG3063 PilF Tfp pilus assembl 99.0 1.7E-08 3.6E-13 82.9 15.9 193 256-457 37-234 (250)
78 KOG0985 Vesicle coat protein c 99.0 1.6E-06 3.5E-11 85.4 31.8 378 5-455 950-1366(1666)
79 KOG2047 mRNA splicing factor [ 99.0 2.4E-05 5.2E-10 74.0 36.5 339 59-419 91-508 (835)
80 KOG3785 Uncharacterized conser 99.0 2.4E-06 5.1E-11 74.8 27.9 369 57-458 71-489 (557)
81 COG3063 PilF Tfp pilus assembl 99.0 3.6E-07 7.8E-12 75.2 21.2 196 219-419 37-238 (250)
82 KOG4162 Predicted calmodulin-b 98.9 1.7E-05 3.7E-10 76.5 34.1 94 360-461 654-751 (799)
83 KOG1125 TPR repeat-containing 98.9 8.2E-08 1.8E-12 89.1 16.5 219 226-457 294-525 (579)
84 cd05804 StaR_like StaR_like; a 98.9 9.4E-06 2E-10 76.3 31.2 304 105-420 5-339 (355)
85 KOG4340 Uncharacterized conser 98.9 4.8E-07 1E-11 77.1 19.6 291 99-412 4-334 (459)
86 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.8E-12 84.6 16.6 146 295-458 112-264 (290)
87 KOG1070 rRNA processing protei 98.9 3.5E-07 7.6E-12 92.9 21.2 201 251-463 1455-1667(1710)
88 cd05804 StaR_like StaR_like; a 98.9 5.3E-06 1.2E-10 78.0 28.2 305 144-459 6-336 (355)
89 PF04733 Coatomer_E: Coatomer 98.8 8.8E-07 1.9E-11 79.2 20.3 221 144-382 35-262 (290)
90 KOG3785 Uncharacterized conser 98.8 7.6E-06 1.6E-10 71.7 24.8 129 288-419 362-492 (557)
91 KOG2376 Signal recognition par 98.8 4.2E-05 9.1E-10 71.7 31.1 381 50-460 19-488 (652)
92 KOG3617 WD40 and TPR repeat-co 98.8 3.9E-05 8.4E-10 74.6 31.2 172 6-207 725-939 (1416)
93 KOG1156 N-terminal acetyltrans 98.8 4.2E-05 9.2E-10 72.5 30.7 387 43-461 11-436 (700)
94 KOG4340 Uncharacterized conser 98.7 5.5E-06 1.2E-10 70.8 20.3 316 80-416 20-374 (459)
95 KOG0985 Vesicle coat protein c 98.7 0.00012 2.6E-09 72.8 31.4 357 6-416 983-1369(1666)
96 PLN02789 farnesyltranstransfer 98.7 1.2E-05 2.6E-10 72.9 23.4 218 226-457 46-300 (320)
97 PF12854 PPR_1: PPR repeat 98.7 2.1E-08 4.6E-13 57.0 3.6 34 138-171 1-34 (34)
98 PRK04841 transcriptional regul 98.7 0.00011 2.4E-09 78.4 33.7 326 84-419 388-762 (903)
99 PF12854 PPR_1: PPR repeat 98.7 3.9E-08 8.4E-13 56.0 4.0 32 351-382 2-33 (34)
100 KOG1070 rRNA processing protei 98.7 1E-05 2.2E-10 82.8 23.5 229 216-452 1457-1693(1710)
101 KOG1914 mRNA cleavage and poly 98.7 4.6E-05 1E-09 70.7 25.6 76 103-183 17-94 (656)
102 KOG0548 Molecular co-chaperone 98.7 4.9E-05 1.1E-09 70.5 25.8 368 57-457 16-453 (539)
103 KOG1914 mRNA cleavage and poly 98.6 0.00029 6.2E-09 65.6 30.4 401 37-457 17-499 (656)
104 KOG3616 Selective LIM binding 98.6 3.8E-05 8.3E-10 73.7 25.4 168 262-457 740-909 (1636)
105 KOG0624 dsRNA-activated protei 98.6 7.2E-05 1.6E-09 65.5 24.6 293 147-460 41-371 (504)
106 PRK10370 formate-dependent nit 98.6 7.5E-06 1.6E-10 69.1 18.0 148 261-419 23-175 (198)
107 PRK14720 transcript cleavage f 98.6 3.4E-05 7.4E-10 78.1 24.8 242 99-399 24-268 (906)
108 PRK04841 transcriptional regul 98.6 0.0001 2.3E-09 78.5 30.0 305 147-460 412-761 (903)
109 TIGR03302 OM_YfiO outer membra 98.6 5.7E-06 1.2E-10 72.7 17.2 188 251-460 30-233 (235)
110 PRK10370 formate-dependent nit 98.5 1.4E-05 3.1E-10 67.4 17.9 151 224-391 23-181 (198)
111 COG5010 TadD Flp pilus assembl 98.5 1.9E-05 4.1E-10 66.7 17.9 156 253-412 66-226 (257)
112 KOG2053 Mitochondrial inherita 98.5 0.001 2.2E-08 65.9 31.1 384 57-465 23-508 (932)
113 TIGR03302 OM_YfiO outer membra 98.5 1.8E-05 3.9E-10 69.5 18.2 184 215-419 31-234 (235)
114 KOG3617 WD40 and TPR repeat-co 98.5 0.00039 8.4E-09 68.0 27.5 337 71-456 723-1106(1416)
115 KOG1128 Uncharacterized conser 98.5 1.1E-05 2.4E-10 77.3 16.8 212 222-461 403-618 (777)
116 PLN02789 farnesyltranstransfer 98.4 0.00019 4.1E-09 65.3 24.0 217 193-419 50-304 (320)
117 PRK14720 transcript cleavage f 98.4 5.4E-05 1.2E-09 76.8 22.2 214 210-441 23-268 (906)
118 KOG0624 dsRNA-activated protei 98.4 0.00092 2E-08 58.8 26.6 303 78-419 46-372 (504)
119 KOG1125 TPR repeat-containing 98.4 2.2E-05 4.8E-10 73.4 17.6 252 193-452 298-564 (579)
120 PRK15359 type III secretion sy 98.4 1.9E-05 4.1E-10 63.0 14.8 121 306-440 14-136 (144)
121 KOG1128 Uncharacterized conser 98.4 1.9E-05 4.1E-10 75.8 16.6 214 180-419 403-618 (777)
122 PRK15179 Vi polysaccharide bio 98.4 5.9E-05 1.3E-09 75.6 20.9 171 284-472 85-258 (694)
123 KOG0548 Molecular co-chaperone 98.4 0.0015 3.3E-08 60.9 27.7 388 19-442 16-472 (539)
124 PRK15359 type III secretion sy 98.4 1.3E-05 2.9E-10 63.9 12.8 107 341-460 14-122 (144)
125 COG5010 TadD Flp pilus assembl 98.3 6.8E-05 1.5E-09 63.4 17.1 157 143-311 66-228 (257)
126 KOG3081 Vesicle coat complex C 98.3 0.00028 6E-09 59.8 20.5 148 292-457 115-269 (299)
127 KOG3081 Vesicle coat complex C 98.3 0.00071 1.5E-08 57.5 22.4 174 237-419 93-273 (299)
128 PRK15179 Vi polysaccharide bio 98.3 0.00017 3.8E-09 72.3 21.1 146 212-363 81-229 (694)
129 KOG1127 TPR repeat-containing 98.3 0.00017 3.8E-09 71.8 20.0 343 84-455 472-909 (1238)
130 COG4783 Putative Zn-dependent 98.2 0.00085 1.8E-08 62.0 23.0 123 322-455 309-433 (484)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5E-05 1.1E-09 70.4 15.5 123 322-457 171-295 (395)
132 KOG3616 Selective LIM binding 98.2 0.0044 9.6E-08 60.2 28.4 166 151-344 739-906 (1636)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.7E-05 1.4E-09 69.6 15.9 131 253-386 168-298 (395)
134 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 49.2 4.2 33 287-319 2-34 (35)
135 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.8E-11 47.8 4.2 33 286-318 2-34 (34)
136 KOG3060 Uncharacterized conser 98.1 0.0014 3E-08 55.3 20.0 163 254-419 52-222 (289)
137 TIGR02552 LcrH_SycD type III s 98.1 6E-05 1.3E-09 59.7 11.8 97 321-419 18-116 (135)
138 KOG1127 TPR repeat-containing 98.1 0.014 2.9E-07 59.0 28.8 390 38-455 524-992 (1238)
139 TIGR02552 LcrH_SycD type III s 98.1 0.0002 4.3E-09 56.6 13.7 108 284-394 16-124 (135)
140 COG4783 Putative Zn-dependent 98.0 0.0025 5.4E-08 59.0 21.8 119 294-416 315-436 (484)
141 KOG3060 Uncharacterized conser 98.0 0.0067 1.4E-07 51.4 21.7 188 193-386 25-222 (289)
142 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 45.4 4.1 33 431-463 2-34 (34)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00084 1.8E-08 53.7 15.3 126 287-414 14-144 (145)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00048 1E-08 55.1 13.7 111 230-345 24-143 (145)
145 TIGR00756 PPR pentatricopeptid 97.9 1.6E-05 3.6E-10 45.7 3.6 34 176-216 1-34 (35)
146 KOG1538 Uncharacterized conser 97.9 0.0033 7.3E-08 60.0 19.8 220 105-383 597-831 (1081)
147 PF01535 PPR: PPR repeat; Int 97.9 2E-05 4.3E-10 43.9 3.3 30 287-316 2-31 (31)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00041 8.8E-09 53.3 11.8 98 322-419 4-107 (119)
149 PF08579 RPM2: Mitochondrial r 97.8 0.00045 9.7E-09 50.5 10.6 81 287-368 27-116 (120)
150 cd00189 TPR Tetratricopeptide 97.8 0.00029 6.2E-09 51.3 9.8 92 359-458 3-96 (100)
151 PRK15363 pathogenicity island 97.8 0.00041 8.9E-09 54.7 10.3 92 358-457 37-130 (157)
152 PF05843 Suf: Suppressor of fo 97.8 0.0013 2.8E-08 59.1 14.9 131 286-419 2-138 (280)
153 PF10037 MRP-S27: Mitochondria 97.7 0.001 2.2E-08 62.2 13.8 123 314-443 60-186 (429)
154 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 42.2 3.3 31 431-461 1-31 (31)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00072 1.6E-08 51.9 11.0 100 357-461 3-107 (119)
156 KOG2053 Mitochondrial inherita 97.6 0.085 1.8E-06 52.9 33.1 404 19-455 23-532 (932)
157 PF12895 Apc3: Anaphase-promot 97.6 7.8E-05 1.7E-09 53.3 4.4 80 334-413 3-83 (84)
158 cd00189 TPR Tetratricopeptide 97.6 0.00077 1.7E-08 49.0 10.0 91 326-418 6-98 (100)
159 PF06239 ECSIT: Evolutionarily 97.6 0.001 2.2E-08 55.1 11.0 99 273-372 33-154 (228)
160 PF14938 SNAP: Soluble NSF att 97.6 0.03 6.4E-07 50.5 21.2 138 256-394 116-274 (282)
161 PF08579 RPM2: Mitochondrial r 97.6 0.00062 1.4E-08 49.7 8.1 72 84-156 39-116 (120)
162 PF12895 Apc3: Anaphase-promot 97.6 0.00034 7.4E-09 49.9 6.7 81 298-381 2-83 (84)
163 PF10037 MRP-S27: Mitochondria 97.5 0.0013 2.8E-08 61.5 11.9 116 215-330 64-183 (429)
164 PF06239 ECSIT: Evolutionarily 97.5 0.00085 1.8E-08 55.5 9.2 101 165-269 35-153 (228)
165 PLN03088 SGT1, suppressor of 97.5 0.0023 5E-08 59.6 13.3 86 332-419 14-101 (356)
166 PLN03088 SGT1, suppressor of 97.5 0.0012 2.6E-08 61.5 11.1 90 363-460 9-100 (356)
167 PF05843 Suf: Suppressor of fo 97.5 0.0032 6.8E-08 56.6 13.4 142 218-366 2-150 (280)
168 PF13414 TPR_11: TPR repeat; P 97.5 0.0005 1.1E-08 46.9 6.3 65 387-459 2-67 (69)
169 PRK15363 pathogenicity island 97.4 0.015 3.3E-07 46.0 15.0 94 255-349 36-132 (157)
170 PF13432 TPR_16: Tetratricopep 97.4 0.00045 9.8E-09 46.4 5.7 59 394-460 3-61 (65)
171 PRK02603 photosystem I assembl 97.4 0.0026 5.7E-08 52.6 11.4 79 359-445 38-121 (172)
172 COG3898 Uncharacterized membra 97.4 0.094 2E-06 47.6 24.5 286 146-459 84-392 (531)
173 CHL00033 ycf3 photosystem I as 97.4 0.0024 5.1E-08 52.7 10.8 111 338-456 17-139 (168)
174 COG4700 Uncharacterized protei 97.4 0.053 1.1E-06 43.8 17.4 130 316-457 85-220 (251)
175 PRK10866 outer membrane biogen 97.4 0.04 8.6E-07 48.3 18.5 183 253-457 31-239 (243)
176 PRK10153 DNA-binding transcrip 97.4 0.012 2.5E-07 57.6 16.6 136 283-419 335-484 (517)
177 PRK02603 photosystem I assembl 97.3 0.0061 1.3E-07 50.4 12.2 88 176-273 36-125 (172)
178 COG4235 Cytochrome c biogenesi 97.3 0.0087 1.9E-07 52.3 13.0 107 353-467 153-264 (287)
179 CHL00033 ycf3 photosystem I as 97.3 0.0064 1.4E-07 50.1 12.0 80 286-367 36-117 (168)
180 PF14559 TPR_19: Tetratricopep 97.3 0.00058 1.3E-08 46.4 4.8 55 399-461 2-56 (68)
181 KOG0553 TPR repeat-containing 97.2 0.001 2.3E-08 57.6 7.1 88 330-419 91-180 (304)
182 PF13525 YfiO: Outer membrane 97.2 0.015 3.2E-07 49.5 13.9 188 253-450 4-198 (203)
183 PF04840 Vps16_C: Vps16, C-ter 97.2 0.17 3.6E-06 46.2 28.0 292 43-397 3-300 (319)
184 KOG2041 WD40 repeat protein [G 97.2 0.27 6E-06 48.1 23.6 231 37-312 689-950 (1189)
185 COG4700 Uncharacterized protei 97.2 0.062 1.3E-06 43.4 15.6 99 214-314 86-189 (251)
186 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.6E-07 44.0 12.0 96 193-290 14-111 (120)
187 KOG0553 TPR repeat-containing 97.1 0.006 1.3E-07 53.1 10.5 101 294-397 90-191 (304)
188 PF04840 Vps16_C: Vps16, C-ter 97.1 0.2 4.3E-06 45.7 21.8 107 321-452 178-284 (319)
189 PF14559 TPR_19: Tetratricopep 97.1 0.0027 5.8E-08 43.0 7.0 59 332-392 3-62 (68)
190 PRK10153 DNA-binding transcrip 97.1 0.034 7.3E-07 54.5 16.6 70 319-391 419-489 (517)
191 PF14938 SNAP: Soluble NSF att 97.1 0.015 3.1E-07 52.5 13.2 132 322-456 116-263 (282)
192 PF07079 DUF1347: Protein of u 97.0 0.27 5.9E-06 45.6 35.5 413 19-457 20-522 (549)
193 PF12688 TPR_5: Tetratrico pep 97.0 0.021 4.6E-07 43.4 11.7 108 291-399 7-117 (120)
194 PRK10866 outer membrane biogen 97.0 0.14 3.1E-06 44.8 18.5 173 220-415 35-239 (243)
195 PF13432 TPR_16: Tetratricopep 97.0 0.0026 5.7E-08 42.6 5.9 58 362-419 3-62 (65)
196 PF12921 ATP13: Mitochondrial 97.0 0.014 3E-07 44.9 10.3 81 286-366 3-98 (126)
197 PF03704 BTAD: Bacterial trans 96.9 0.0033 7.1E-08 50.4 7.1 70 390-467 64-138 (146)
198 KOG0550 Molecular chaperone (D 96.9 0.029 6.3E-07 51.1 13.3 153 294-460 178-351 (486)
199 PF13371 TPR_9: Tetratricopept 96.9 0.0038 8.2E-08 43.0 6.5 58 396-461 3-60 (73)
200 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.35 7.5E-06 44.9 26.5 127 321-457 398-529 (660)
201 KOG2796 Uncharacterized conser 96.9 0.049 1.1E-06 46.6 13.6 139 177-324 179-323 (366)
202 COG3898 Uncharacterized membra 96.9 0.32 6.8E-06 44.3 25.7 311 84-419 67-394 (531)
203 PF13281 DUF4071: Domain of un 96.9 0.15 3.2E-06 47.1 17.6 159 258-419 145-336 (374)
204 PF13414 TPR_11: TPR repeat; P 96.9 0.0038 8.3E-08 42.4 5.9 61 217-280 3-64 (69)
205 KOG2796 Uncharacterized conser 96.7 0.18 3.8E-06 43.3 15.6 133 286-419 178-317 (366)
206 PRK10803 tol-pal system protei 96.7 0.019 4.2E-07 50.7 10.3 86 367-457 154-244 (263)
207 KOG1538 Uncharacterized conser 96.7 0.17 3.6E-06 49.1 16.7 49 30-98 625-673 (1081)
208 KOG0550 Molecular chaperone (D 96.6 0.25 5.3E-06 45.3 16.7 162 215-382 166-347 (486)
209 PF03704 BTAD: Bacterial trans 96.6 0.037 8E-07 44.3 10.8 73 286-359 63-139 (146)
210 COG4235 Cytochrome c biogenesi 96.6 0.11 2.4E-06 45.7 13.7 97 251-348 153-255 (287)
211 PF13525 YfiO: Outer membrane 96.5 0.35 7.6E-06 41.1 16.8 179 220-408 8-198 (203)
212 PF13424 TPR_12: Tetratricopep 96.5 0.0054 1.2E-07 42.9 4.5 68 388-457 5-73 (78)
213 PF09205 DUF1955: Domain of un 96.4 0.27 5.8E-06 37.4 14.9 141 295-462 12-152 (161)
214 PF13281 DUF4071: Domain of un 96.4 0.28 6E-06 45.3 16.3 166 290-460 146-335 (374)
215 PRK10803 tol-pal system protei 96.4 0.055 1.2E-06 47.8 11.6 99 321-419 144-248 (263)
216 PF12921 ATP13: Mitochondrial 96.4 0.038 8.2E-07 42.5 9.1 83 319-401 1-101 (126)
217 KOG1130 Predicted G-alpha GTPa 96.3 0.026 5.7E-07 51.3 8.9 261 193-458 30-343 (639)
218 PF13424 TPR_12: Tetratricopep 96.3 0.0075 1.6E-07 42.1 4.6 60 357-416 6-74 (78)
219 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.99 2.1E-05 42.1 26.6 131 286-419 398-533 (660)
220 KOG2280 Vacuolar assembly/sort 96.2 1.6 3.4E-05 43.5 23.0 115 315-453 679-793 (829)
221 PRK15331 chaperone protein Sic 96.1 0.058 1.3E-06 43.0 9.0 85 330-416 47-133 (165)
222 PF13371 TPR_9: Tetratricopept 96.1 0.028 6E-07 38.6 6.6 56 364-419 3-60 (73)
223 KOG3941 Intermediate in Toll s 95.9 0.069 1.5E-06 46.2 8.9 115 163-281 53-186 (406)
224 PRK11619 lytic murein transgly 95.9 2.4 5.2E-05 43.0 28.0 78 145-231 100-177 (644)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.053 1.1E-06 50.7 8.8 101 353-464 72-179 (453)
226 PF10300 DUF3808: Protein of u 95.8 0.73 1.6E-05 44.8 17.0 160 288-458 191-375 (468)
227 PF13428 TPR_14: Tetratricopep 95.7 0.033 7.1E-07 33.7 4.7 41 389-437 2-42 (44)
228 KOG3941 Intermediate in Toll s 95.7 0.15 3.2E-06 44.2 10.0 107 272-379 52-182 (406)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.33 7.1E-06 45.6 12.7 100 214-316 72-176 (453)
230 KOG1258 mRNA processing protei 95.4 2.9 6.3E-05 40.7 30.4 391 57-464 59-512 (577)
231 PF13431 TPR_17: Tetratricopep 95.3 0.017 3.6E-07 32.7 2.4 33 411-451 2-34 (34)
232 KOG1920 IkappaB kinase complex 95.3 3.5 7.6E-05 43.5 19.9 144 256-415 910-1053(1265)
233 KOG0543 FKBP-type peptidyl-pro 95.3 0.38 8.3E-06 44.2 12.0 93 357-457 258-353 (397)
234 KOG1941 Acetylcholine receptor 95.3 0.7 1.5E-05 41.8 13.2 223 230-455 19-271 (518)
235 COG1729 Uncharacterized protei 95.2 0.2 4.3E-06 43.5 9.4 95 322-419 144-246 (262)
236 PF04053 Coatomer_WDAD: Coatom 95.1 0.98 2.1E-05 43.4 14.9 160 193-387 274-433 (443)
237 PRK15331 chaperone protein Sic 95.1 0.13 2.9E-06 41.0 7.6 85 226-313 46-133 (165)
238 KOG1130 Predicted G-alpha GTPa 95.0 0.29 6.3E-06 44.8 10.2 127 255-381 196-340 (639)
239 KOG2280 Vacuolar assembly/sort 95.0 4.3 9.4E-05 40.6 24.0 300 138-457 426-771 (829)
240 PF10300 DUF3808: Protein of u 94.9 2.7 5.8E-05 41.0 17.6 161 178-348 191-375 (468)
241 PF13170 DUF4003: Protein of u 94.9 0.42 9.1E-06 43.1 11.2 143 7-151 60-224 (297)
242 PF08631 SPO22: Meiosis protei 94.8 2.9 6.3E-05 37.6 22.2 100 218-320 85-192 (278)
243 KOG0543 FKBP-type peptidyl-pro 94.7 0.46 1E-05 43.6 10.9 87 261-348 215-319 (397)
244 KOG1585 Protein required for f 94.7 2.4 5.3E-05 36.3 14.7 203 144-381 31-252 (308)
245 PF13512 TPR_18: Tetratricopep 94.7 0.87 1.9E-05 35.6 10.9 54 261-314 17-76 (142)
246 KOG1585 Protein required for f 94.6 2.6 5.6E-05 36.1 15.1 204 219-453 33-250 (308)
247 smart00299 CLH Clathrin heavy 94.6 1.8 3.9E-05 34.1 14.1 87 108-206 9-95 (140)
248 PF04053 Coatomer_WDAD: Coatom 94.5 2.2 4.7E-05 41.1 15.6 153 84-281 275-429 (443)
249 KOG2610 Uncharacterized conser 94.5 1 2.3E-05 40.2 12.1 149 265-416 114-275 (491)
250 COG1729 Uncharacterized protei 94.5 0.41 8.9E-06 41.6 9.6 95 287-382 144-241 (262)
251 PF09205 DUF1955: Domain of un 94.5 1.7 3.6E-05 33.3 12.5 64 288-353 89-152 (161)
252 KOG2041 WD40 repeat protein [G 94.4 5.9 0.00013 39.4 25.7 299 57-405 748-1074(1189)
253 KOG1920 IkappaB kinase complex 94.4 6.7 0.00015 41.6 19.1 114 317-455 932-1051(1265)
254 KOG4555 TPR repeat-containing 94.3 0.34 7.4E-06 36.8 7.4 88 329-419 52-146 (175)
255 KOG4555 TPR repeat-containing 94.2 0.53 1.1E-05 35.8 8.3 89 292-382 50-141 (175)
256 COG0457 NrfG FOG: TPR repeat [ 94.1 3.3 7.2E-05 35.4 23.7 219 195-419 38-267 (291)
257 smart00299 CLH Clathrin heavy 94.1 2.3 5E-05 33.5 14.5 126 289-442 11-137 (140)
258 COG3629 DnrI DNA-binding trans 94.1 0.31 6.6E-06 43.1 8.1 71 388-466 153-228 (280)
259 PF04184 ST7: ST7 protein; In 93.9 4.3 9.4E-05 38.7 15.5 100 321-420 260-378 (539)
260 PF13512 TPR_18: Tetratricopep 93.9 1.5 3.4E-05 34.2 10.8 53 367-419 21-78 (142)
261 KOG2114 Vacuolar assembly/sort 93.9 3.3 7.1E-05 42.0 15.3 183 217-414 334-516 (933)
262 COG4105 ComL DNA uptake lipopr 93.7 4.2 9.2E-05 35.2 17.7 59 394-457 173-231 (254)
263 PF02259 FAT: FAT domain; Int 93.4 6.4 0.00014 36.7 16.6 72 386-461 144-215 (352)
264 KOG1941 Acetylcholine receptor 93.2 2.4 5.1E-05 38.5 12.0 125 291-415 128-273 (518)
265 PF00637 Clathrin: Region in C 93.1 0.031 6.8E-07 44.5 0.5 86 111-207 12-97 (143)
266 KOG2114 Vacuolar assembly/sort 93.0 2.1 4.6E-05 43.3 12.5 181 215-416 362-549 (933)
267 KOG2610 Uncharacterized conser 93.0 1.3 2.8E-05 39.7 10.0 163 297-466 115-283 (491)
268 COG3118 Thioredoxin domain-con 93.0 6.3 0.00014 35.0 17.0 170 272-449 121-291 (304)
269 PF13170 DUF4003: Protein of u 92.8 2.4 5.2E-05 38.3 12.0 149 106-262 60-225 (297)
270 PF13428 TPR_14: Tetratricopep 92.8 0.38 8.3E-06 28.9 4.9 39 219-260 3-41 (44)
271 PF07035 Mic1: Colon cancer-as 92.8 4.5 9.8E-05 32.8 12.5 133 90-245 14-148 (167)
272 PRK15180 Vi polysaccharide bio 92.7 2.3 5E-05 40.1 11.6 98 366-471 333-432 (831)
273 COG4649 Uncharacterized protei 92.7 1.1 2.4E-05 36.0 8.3 51 229-281 144-194 (221)
274 COG3629 DnrI DNA-binding trans 92.5 0.96 2.1E-05 40.0 8.8 81 357-439 154-236 (280)
275 PRK11906 transcriptional regul 92.5 2 4.3E-05 40.7 11.1 178 286-478 252-449 (458)
276 COG0457 NrfG FOG: TPR repeat [ 92.3 6.4 0.00014 33.5 26.6 218 230-459 36-265 (291)
277 COG3118 Thioredoxin domain-con 92.2 7.9 0.00017 34.4 17.3 142 224-370 141-286 (304)
278 COG1747 Uncharacterized N-term 91.7 13 0.00028 35.7 19.2 177 214-398 63-249 (711)
279 PRK11906 transcriptional regul 91.6 12 0.00027 35.6 15.2 157 255-416 252-435 (458)
280 PF00515 TPR_1: Tetratricopept 91.6 0.6 1.3E-05 26.0 4.5 31 389-419 2-32 (34)
281 PF13431 TPR_17: Tetratricopep 91.5 0.33 7.2E-06 27.3 3.2 32 240-274 2-33 (34)
282 PF13176 TPR_7: Tetratricopept 91.3 0.51 1.1E-05 26.9 4.0 27 390-416 1-27 (36)
283 PF00637 Clathrin: Region in C 91.3 0.099 2.1E-06 41.6 1.3 128 291-445 13-140 (143)
284 PF10602 RPN7: 26S proteasome 91.1 1.2 2.6E-05 36.8 7.5 60 322-382 38-99 (177)
285 PF04184 ST7: ST7 protein; In 91.0 15 0.00033 35.2 15.8 75 288-363 262-338 (539)
286 PF13176 TPR_7: Tetratricopept 90.9 0.62 1.3E-05 26.5 4.1 23 288-310 2-24 (36)
287 COG2909 MalT ATP-dependent tra 90.7 22 0.00049 36.7 26.6 222 228-455 426-684 (894)
288 COG1747 Uncharacterized N-term 90.5 17 0.00037 35.0 19.7 174 196-382 82-266 (711)
289 PF02259 FAT: FAT domain; Int 90.4 15 0.00033 34.2 18.7 66 283-348 144-212 (352)
290 PF07719 TPR_2: Tetratricopept 90.4 1 2.3E-05 24.9 4.7 31 389-419 2-32 (34)
291 PF07035 Mic1: Colon cancer-as 90.3 8.7 0.00019 31.2 14.3 43 129-171 14-56 (167)
292 KOG2066 Vacuolar assembly/sort 90.2 23 0.0005 36.0 18.8 143 125-284 372-535 (846)
293 KOG4648 Uncharacterized conser 90.2 0.72 1.6E-05 41.3 5.6 91 327-419 104-196 (536)
294 PF10602 RPN7: 26S proteasome 90.0 5.5 0.00012 32.9 10.5 62 177-245 38-101 (177)
295 TIGR02508 type_III_yscG type I 89.9 5.9 0.00013 28.7 9.3 86 232-323 20-105 (115)
296 KOG0890 Protein kinase of the 89.8 45 0.00098 38.7 23.0 316 115-461 1392-1733(2382)
297 KOG1464 COP9 signalosome, subu 89.4 14 0.0003 32.3 17.3 204 210-416 19-259 (440)
298 PF09613 HrpB1_HrpK: Bacterial 89.4 9.8 0.00021 30.5 13.2 51 228-281 21-71 (160)
299 PF04097 Nic96: Nup93/Nic96; 89.3 26 0.00057 35.6 16.6 21 366-386 515-535 (613)
300 KOG4570 Uncharacterized conser 89.0 2 4.3E-05 38.2 7.3 103 30-139 54-165 (418)
301 KOG0276 Vesicle coat complex C 88.9 6.5 0.00014 38.4 11.1 150 84-282 600-749 (794)
302 PF07079 DUF1347: Protein of u 88.3 24 0.00051 33.6 29.0 203 174-393 297-530 (549)
303 PF02284 COX5A: Cytochrome c o 88.3 4.7 0.0001 29.3 7.5 61 302-364 27-87 (108)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 4.4 9.5E-05 29.1 7.2 63 300-364 22-84 (103)
305 KOG1258 mRNA processing protei 87.7 30 0.00065 34.0 26.7 123 73-207 44-178 (577)
306 KOG4570 Uncharacterized conser 87.6 9.9 0.00022 34.0 10.6 43 336-379 116-158 (418)
307 PF13374 TPR_10: Tetratricopep 87.4 1.6 3.5E-05 25.4 4.4 31 388-418 2-32 (42)
308 PF11207 DUF2989: Protein of u 87.0 4.4 9.6E-05 33.8 7.8 75 85-164 121-198 (203)
309 COG4785 NlpI Lipoprotein NlpI, 86.9 18 0.00039 30.6 15.9 168 285-460 99-267 (297)
310 COG4785 NlpI Lipoprotein NlpI, 86.8 18 0.00039 30.6 14.2 182 228-419 76-268 (297)
311 TIGR02561 HrpB1_HrpK type III 86.8 14 0.0003 29.2 11.1 52 229-283 22-73 (153)
312 KOG2396 HAT (Half-A-TPR) repea 86.5 32 0.0007 33.1 18.3 237 164-416 302-558 (568)
313 PF09613 HrpB1_HrpK: Bacterial 86.5 15 0.00033 29.4 12.3 16 367-382 55-70 (160)
314 KOG4234 TPR repeat-containing 86.3 3.2 6.9E-05 34.4 6.5 89 329-419 104-199 (271)
315 COG4105 ComL DNA uptake lipopr 86.0 23 0.00049 30.9 19.1 58 361-419 172-234 (254)
316 KOG0276 Vesicle coat complex C 86.0 19 0.00041 35.4 12.3 26 357-382 667-692 (794)
317 TIGR02561 HrpB1_HrpK type III 85.9 6.1 0.00013 31.1 7.6 54 399-460 21-74 (153)
318 PF13929 mRNA_stabil: mRNA sta 85.0 16 0.00035 32.5 10.7 112 301-412 144-262 (292)
319 KOG4234 TPR repeat-containing 84.9 21 0.00045 29.9 10.4 93 293-388 103-201 (271)
320 PF13181 TPR_8: Tetratricopept 84.6 2.3 4.9E-05 23.5 3.8 30 390-419 3-32 (34)
321 PF08631 SPO22: Meiosis protei 84.2 31 0.00068 31.0 24.8 219 193-415 6-273 (278)
322 PF09477 Type_III_YscG: Bacter 84.1 14 0.00031 27.1 9.3 80 231-315 20-99 (116)
323 PF07721 TPR_4: Tetratricopept 84.1 1.6 3.5E-05 22.6 2.7 24 431-454 2-25 (26)
324 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 9.3 0.0002 27.5 7.1 38 381-418 35-72 (103)
325 KOG1586 Protein required for f 83.5 12 0.00025 32.1 8.7 145 263-419 23-185 (288)
326 PF10345 Cohesin_load: Cohesin 83.1 58 0.0013 33.3 28.0 189 265-458 372-605 (608)
327 PRK09687 putative lyase; Provi 82.8 36 0.00077 30.6 24.7 235 142-398 35-277 (280)
328 PRK15180 Vi polysaccharide bio 82.7 44 0.00094 32.1 12.9 117 227-348 299-419 (831)
329 PF13374 TPR_10: Tetratricopep 82.6 3.6 7.8E-05 23.9 4.3 27 286-312 3-29 (42)
330 PF04190 DUF410: Protein of un 82.5 35 0.00076 30.3 15.8 124 210-349 42-170 (260)
331 PF00515 TPR_1: Tetratricopept 82.2 4.4 9.5E-05 22.3 4.3 27 287-313 3-29 (34)
332 PF07719 TPR_2: Tetratricopept 81.3 3.1 6.7E-05 22.8 3.5 29 431-459 2-30 (34)
333 COG4649 Uncharacterized protei 81.2 28 0.00061 28.4 13.9 136 105-249 58-199 (221)
334 TIGR03504 FimV_Cterm FimV C-te 81.1 2.7 5.9E-05 25.3 3.2 26 435-460 4-29 (44)
335 PF02284 COX5A: Cytochrome c o 80.9 19 0.00042 26.3 9.2 55 376-438 33-87 (108)
336 PF11207 DUF2989: Protein of u 80.5 21 0.00046 29.9 9.2 73 198-273 124-197 (203)
337 COG3947 Response regulator con 80.2 43 0.00093 29.9 14.2 69 255-323 280-356 (361)
338 PF13762 MNE1: Mitochondrial s 80.2 26 0.00057 27.7 9.2 50 319-369 78-128 (145)
339 PF13174 TPR_6: Tetratricopept 79.9 4 8.7E-05 22.1 3.6 27 393-419 5-31 (33)
340 PF10345 Cohesin_load: Cohesin 79.2 79 0.0017 32.3 16.7 177 238-415 42-252 (608)
341 PF13929 mRNA_stabil: mRNA sta 79.1 47 0.001 29.7 22.4 116 267-382 141-264 (292)
342 COG3947 Response regulator con 78.8 48 0.001 29.6 15.9 60 390-457 281-340 (361)
343 COG4455 ImpE Protein of avirul 78.0 10 0.00022 32.1 6.6 58 392-457 5-62 (273)
344 KOG1550 Extracellular protein 77.8 82 0.0018 31.7 16.4 179 233-419 228-428 (552)
345 PF13181 TPR_8: Tetratricopept 77.4 5.6 0.00012 21.8 3.7 28 431-458 2-29 (34)
346 KOG4648 Uncharacterized conser 76.9 9.1 0.0002 34.7 6.4 93 292-388 104-198 (536)
347 KOG1464 COP9 signalosome, subu 76.5 53 0.0012 28.9 14.0 187 266-458 39-260 (440)
348 TIGR03504 FimV_Cterm FimV C-te 75.6 7.2 0.00016 23.5 3.9 24 291-314 5-28 (44)
349 PF10579 Rapsyn_N: Rapsyn N-te 75.4 7.2 0.00016 26.9 4.2 48 229-276 18-65 (80)
350 cd08819 CARD_MDA5_2 Caspase ac 74.6 27 0.00059 24.7 7.0 66 236-305 21-86 (88)
351 KOG0991 Replication factor C, 74.2 58 0.0012 28.2 15.0 34 385-419 236-269 (333)
352 KOG0890 Protein kinase of the 74.1 1.9E+02 0.0042 34.2 22.2 303 84-419 1397-1733(2382)
353 KOG1586 Protein required for f 72.7 63 0.0014 27.9 13.5 145 226-382 23-180 (288)
354 COG2976 Uncharacterized protei 72.6 56 0.0012 27.3 14.3 128 286-419 55-190 (207)
355 TIGR02508 type_III_yscG type I 72.6 35 0.00075 24.9 9.6 78 122-207 18-95 (115)
356 KOG4567 GTPase-activating prot 71.7 59 0.0013 29.3 9.9 74 304-383 262-345 (370)
357 smart00028 TPR Tetratricopepti 71.6 9.2 0.0002 19.8 3.8 30 390-419 3-32 (34)
358 PF04097 Nic96: Nup93/Nic96; 71.3 1.3E+02 0.0027 30.9 20.5 63 144-207 112-179 (613)
359 COG4455 ImpE Protein of avirul 70.8 67 0.0014 27.5 12.6 74 322-397 3-81 (273)
360 PF08311 Mad3_BUB1_I: Mad3/BUB 70.8 31 0.00067 26.6 7.5 42 127-168 81-123 (126)
361 PRK11619 lytic murein transgly 70.7 1.3E+02 0.0029 30.9 38.0 95 364-464 415-510 (644)
362 COG5159 RPN6 26S proteasome re 70.3 74 0.0016 28.4 10.1 24 434-457 129-152 (421)
363 KOG4077 Cytochrome c oxidase, 69.9 35 0.00077 26.1 7.1 59 303-363 67-125 (149)
364 COG2976 Uncharacterized protei 68.1 71 0.0015 26.7 13.2 91 225-315 97-189 (207)
365 PF09670 Cas_Cas02710: CRISPR- 67.9 1.1E+02 0.0024 29.0 12.3 53 295-348 141-197 (379)
366 PF14669 Asp_Glu_race_2: Putat 67.5 72 0.0016 26.6 12.6 90 358-455 109-206 (233)
367 PF10579 Rapsyn_N: Rapsyn N-te 67.0 19 0.0004 24.9 4.7 46 332-377 18-64 (80)
368 PF13934 ELYS: Nuclear pore co 66.3 87 0.0019 27.1 13.2 53 362-415 114-167 (226)
369 PF11846 DUF3366: Domain of un 66.1 30 0.00065 29.0 7.2 37 383-419 139-175 (193)
370 KOG1550 Extracellular protein 66.1 1.5E+02 0.0033 29.8 19.3 179 160-348 228-425 (552)
371 PF12926 MOZART2: Mitotic-spin 65.6 45 0.00097 23.5 6.5 62 5-70 8-70 (88)
372 cd08819 CARD_MDA5_2 Caspase ac 65.4 34 0.00074 24.2 5.9 58 128-187 21-78 (88)
373 PF08311 Mad3_BUB1_I: Mad3/BUB 64.9 62 0.0014 24.9 9.0 44 235-279 81-124 (126)
374 PF13762 MNE1: Mitochondrial s 64.8 69 0.0015 25.4 10.7 81 147-234 42-132 (145)
375 PRK12798 chemotaxis protein; R 64.7 1.3E+02 0.0028 28.6 20.6 191 267-463 125-328 (421)
376 KOG0687 26S proteasome regulat 64.6 1.1E+02 0.0025 27.8 12.7 147 284-441 69-227 (393)
377 PF07163 Pex26: Pex26 protein; 64.1 97 0.0021 27.6 9.7 85 259-343 88-181 (309)
378 smart00386 HAT HAT (Half-A-TPR 64.1 20 0.00043 19.0 4.1 30 402-439 1-30 (33)
379 PF11846 DUF3366: Domain of un 64.0 28 0.0006 29.2 6.6 50 333-382 121-170 (193)
380 KOG2066 Vacuolar assembly/sort 63.8 1.7E+02 0.0037 30.2 12.5 153 293-457 364-532 (846)
381 PF04034 DUF367: Domain of unk 63.4 62 0.0013 24.8 7.4 62 354-415 64-126 (127)
382 KOG2396 HAT (Half-A-TPR) repea 63.2 1.5E+02 0.0033 28.8 32.8 241 196-455 298-555 (568)
383 PHA02875 ankyrin repeat protei 62.2 1.5E+02 0.0032 28.4 12.6 73 90-170 15-91 (413)
384 KOG2063 Vacuolar assembly/sort 61.3 1.6E+02 0.0034 31.3 12.2 29 429-457 683-711 (877)
385 KOG4507 Uncharacterized conser 61.2 23 0.0005 34.7 6.0 144 38-187 569-722 (886)
386 KOG4077 Cytochrome c oxidase, 59.9 65 0.0014 24.7 6.8 44 376-419 72-115 (149)
387 PRK09687 putative lyase; Provi 59.9 1.3E+02 0.0029 27.0 28.0 235 105-367 36-278 (280)
388 PF11848 DUF3368: Domain of un 59.2 39 0.00085 20.7 5.1 33 296-328 13-45 (48)
389 PF11663 Toxin_YhaV: Toxin wit 59.2 14 0.00031 28.4 3.5 30 84-116 109-138 (140)
390 KOG2908 26S proteasome regulat 58.6 1.1E+02 0.0023 28.2 9.1 64 258-321 79-156 (380)
391 PF08424 NRDE-2: NRDE-2, neces 56.9 1.6E+02 0.0035 27.1 14.5 125 337-463 48-187 (321)
392 PF09477 Type_III_YscG: Bacter 56.0 82 0.0018 23.4 10.3 76 124-207 21-96 (116)
393 PF14853 Fis1_TPR_C: Fis1 C-te 55.9 32 0.00069 21.7 4.2 26 394-419 7-32 (53)
394 PRK10941 hypothetical protein; 55.6 85 0.0019 28.0 8.3 61 391-459 184-244 (269)
395 KOG4279 Serine/threonine prote 55.5 2.4E+02 0.0052 29.2 11.7 183 234-419 180-397 (1226)
396 KOG4642 Chaperone-dependent E3 55.2 62 0.0013 28.1 6.8 122 330-457 20-144 (284)
397 COG5108 RPO41 Mitochondrial DN 54.6 71 0.0015 32.1 8.0 47 290-336 33-81 (1117)
398 PF10366 Vps39_1: Vacuolar sor 54.4 88 0.0019 23.3 8.0 27 287-313 41-67 (108)
399 PF07163 Pex26: Pex26 protein; 54.3 1.6E+02 0.0035 26.3 9.4 87 182-277 90-181 (309)
400 PF06552 TOM20_plant: Plant sp 54.2 99 0.0021 25.6 7.6 27 302-330 97-123 (186)
401 PF06552 TOM20_plant: Plant sp 52.8 79 0.0017 26.1 6.9 64 383-461 63-138 (186)
402 KOG4521 Nuclear pore complex, 52.7 3.5E+02 0.0076 29.7 15.1 123 321-452 984-1124(1480)
403 PF13934 ELYS: Nuclear pore co 52.6 1.6E+02 0.0034 25.6 12.6 102 341-457 64-167 (226)
404 PF14561 TPR_20: Tetratricopep 52.3 65 0.0014 23.0 5.8 46 408-461 8-53 (90)
405 PF14689 SPOB_a: Sensor_kinase 52.1 31 0.00068 22.5 3.9 30 429-458 22-51 (62)
406 PF12862 Apc5: Anaphase-promot 51.5 74 0.0016 22.8 6.2 57 398-458 8-69 (94)
407 KOG3364 Membrane protein invol 51.3 77 0.0017 24.7 6.2 67 353-419 29-102 (149)
408 PF12926 MOZART2: Mitotic-spin 50.8 87 0.0019 22.1 6.5 62 105-171 9-70 (88)
409 KOG4567 GTPase-activating prot 49.9 1.7E+02 0.0037 26.6 8.9 79 90-177 263-351 (370)
410 PF14689 SPOB_a: Sensor_kinase 49.6 46 0.00099 21.8 4.3 19 292-310 30-48 (62)
411 PRK10564 maltose regulon perip 49.2 44 0.00095 30.1 5.4 45 211-257 250-295 (303)
412 KOG2297 Predicted translation 49.2 2.1E+02 0.0045 26.0 10.7 20 356-375 321-340 (412)
413 PHA02875 ankyrin repeat protei 49.1 2.5E+02 0.0053 26.9 15.6 104 57-169 13-124 (413)
414 COG0735 Fur Fe2+/Zn2+ uptake r 48.7 86 0.0019 24.9 6.6 63 306-370 7-69 (145)
415 PF10255 Paf67: RNA polymerase 48.6 1.2E+02 0.0026 29.0 8.4 59 324-382 126-190 (404)
416 PRK10564 maltose regulon perip 48.6 38 0.00082 30.4 4.9 37 287-323 259-295 (303)
417 KOG3807 Predicted membrane pro 48.4 2.2E+02 0.0048 26.1 12.0 54 326-379 281-334 (556)
418 PF11848 DUF3368: Domain of un 48.1 63 0.0014 19.8 4.6 28 125-152 18-45 (48)
419 smart00777 Mad3_BUB1_I Mad3/BU 48.1 90 0.0019 24.0 6.3 42 127-168 81-123 (125)
420 PF07575 Nucleopor_Nup85: Nup8 47.8 3.1E+02 0.0068 27.7 13.2 44 305-348 390-433 (566)
421 PF12862 Apc5: Anaphase-promot 47.4 85 0.0018 22.5 6.0 53 367-419 9-72 (94)
422 PF11838 ERAP1_C: ERAP1-like C 46.7 2.3E+02 0.005 25.9 21.1 82 336-417 146-230 (324)
423 PRK13184 pknD serine/threonine 46.6 4.2E+02 0.009 28.8 20.4 261 182-459 482-833 (932)
424 PRK02287 hypothetical protein; 46.4 1.6E+02 0.0035 24.1 7.7 61 356-416 107-168 (171)
425 PF10255 Paf67: RNA polymerase 45.9 97 0.0021 29.5 7.4 57 256-312 124-191 (404)
426 PF12069 DUF3549: Protein of u 45.6 2.5E+02 0.0055 26.0 12.6 133 258-394 170-304 (340)
427 KOG4507 Uncharacterized conser 45.6 76 0.0016 31.5 6.7 101 332-441 619-721 (886)
428 KOG4814 Uncharacterized conser 45.5 2.8E+02 0.006 28.2 10.3 84 367-458 365-456 (872)
429 PF04762 IKI3: IKI3 family; I 45.4 4.4E+02 0.0095 28.7 15.7 31 253-283 811-843 (928)
430 cd00280 TRFH Telomeric Repeat 43.9 1.5E+02 0.0033 24.6 7.2 20 329-348 120-139 (200)
431 cd00280 TRFH Telomeric Repeat 42.5 1.5E+02 0.0034 24.5 7.0 68 336-403 85-158 (200)
432 smart00777 Mad3_BUB1_I Mad3/BU 42.3 1.6E+02 0.0034 22.7 8.6 44 235-279 81-124 (125)
433 PF09986 DUF2225: Uncharacteri 42.0 2.2E+02 0.0048 24.4 8.5 97 366-464 87-199 (214)
434 PF09454 Vps23_core: Vps23 cor 42.0 81 0.0018 20.9 4.6 51 281-332 4-54 (65)
435 PF09454 Vps23_core: Vps23 cor 41.8 31 0.00067 22.9 2.6 52 385-444 5-56 (65)
436 PRK14956 DNA polymerase III su 41.7 2.8E+02 0.0061 27.3 9.9 95 303-419 184-279 (484)
437 PRK14962 DNA polymerase III su 41.2 3.6E+02 0.0078 26.6 12.0 102 33-158 191-292 (472)
438 PF10475 DUF2450: Protein of u 41.2 1.4E+02 0.0031 27.0 7.7 52 149-207 103-154 (291)
439 KOG2034 Vacuolar sorting prote 40.7 4.7E+02 0.01 27.7 17.6 237 6-279 506-746 (911)
440 PF07575 Nucleopor_Nup85: Nup8 40.5 2.3E+02 0.0049 28.7 9.7 62 216-281 404-465 (566)
441 KOG4642 Chaperone-dependent E3 40.4 2.5E+02 0.0055 24.5 10.0 110 231-343 24-140 (284)
442 KOG2659 LisH motif-containing 40.2 2.4E+02 0.0053 24.3 9.3 20 363-382 71-90 (228)
443 PF08424 NRDE-2: NRDE-2, neces 40.0 3E+02 0.0066 25.3 12.4 79 196-280 47-128 (321)
444 PF14863 Alkyl_sulf_dimr: Alky 39.6 1.7E+02 0.0037 23.1 6.8 63 372-445 57-119 (141)
445 COG2909 MalT ATP-dependent tra 39.2 5E+02 0.011 27.6 21.9 60 222-281 623-686 (894)
446 COG0735 Fur Fe2+/Zn2+ uptake r 39.2 1.8E+02 0.0039 23.1 7.1 44 290-333 25-68 (145)
447 PF04190 DUF410: Protein of un 39.1 2.8E+02 0.0061 24.6 13.6 104 57-170 4-116 (260)
448 PRK14700 recombination factor 39.0 3E+02 0.0065 25.0 11.2 71 174-248 122-197 (300)
449 PF11817 Foie-gras_1: Foie gra 38.4 1.3E+02 0.0029 26.4 6.9 22 259-280 183-204 (247)
450 PF11817 Foie-gras_1: Foie gra 38.2 2E+02 0.0043 25.3 8.0 56 290-345 183-243 (247)
451 PF04910 Tcf25: Transcriptiona 38.2 3.5E+02 0.0076 25.5 13.8 31 251-281 37-67 (360)
452 TIGR03581 EF_0839 conserved hy 37.7 1.7E+02 0.0038 24.9 6.8 81 371-457 136-235 (236)
453 PRK11639 zinc uptake transcrip 37.4 1.6E+02 0.0035 24.1 6.7 60 311-372 17-76 (169)
454 COG5159 RPN6 26S proteasome re 37.1 3.1E+02 0.0068 24.7 14.3 186 193-382 16-232 (421)
455 KOG0292 Vesicle coat complex C 36.4 46 0.00099 34.6 3.9 26 357-382 673-698 (1202)
456 KOG0403 Neoplastic transformat 36.3 4.1E+02 0.0088 25.7 23.9 61 392-460 513-573 (645)
457 KOG0686 COP9 signalosome, subu 36.1 3.9E+02 0.0085 25.5 14.0 15 334-348 318-332 (466)
458 COG5187 RPN7 26S proteasome re 35.9 3.3E+02 0.0072 24.6 8.9 102 316-419 111-223 (412)
459 PF14669 Asp_Glu_race_2: Putat 35.6 2.7E+02 0.0058 23.4 13.7 178 99-279 2-206 (233)
460 KOG2471 TPR repeat-containing 35.4 3.1E+02 0.0068 26.8 8.8 103 262-367 248-380 (696)
461 KOG0403 Neoplastic transformat 35.4 4.2E+02 0.0091 25.6 21.3 61 359-419 512-574 (645)
462 PF10366 Vps39_1: Vacuolar sor 35.1 1.9E+02 0.0041 21.5 7.3 27 176-207 40-66 (108)
463 KOG1308 Hsp70-interacting prot 34.9 31 0.00066 31.5 2.3 120 327-458 122-243 (377)
464 PF11768 DUF3312: Protein of u 34.6 4.8E+02 0.01 26.0 11.8 55 258-312 412-471 (545)
465 KOG0686 COP9 signalosome, subu 34.6 4.2E+02 0.009 25.3 14.4 59 255-313 151-215 (466)
466 KOG2300 Uncharacterized conser 33.3 4.8E+02 0.01 25.6 30.4 339 107-454 89-509 (629)
467 KOG1308 Hsp70-interacting prot 33.3 53 0.0011 30.1 3.5 120 295-418 124-245 (377)
468 KOG0292 Vesicle coat complex C 33.1 4.7E+02 0.01 27.8 10.1 132 152-314 651-782 (1202)
469 cd07153 Fur_like Ferric uptake 33.0 1.1E+02 0.0024 22.9 4.9 39 296-334 11-49 (116)
470 PF11663 Toxin_YhaV: Toxin wit 32.5 41 0.00088 26.1 2.3 27 13-40 104-130 (140)
471 PRK10941 hypothetical protein; 32.1 3.7E+02 0.0081 24.0 10.6 78 288-366 184-261 (269)
472 PRK11639 zinc uptake transcrip 31.4 2.9E+02 0.0063 22.6 7.5 55 350-405 20-77 (169)
473 PF14561 TPR_20: Tetratricopep 30.5 2E+02 0.0044 20.5 8.4 50 251-300 19-73 (90)
474 PRK09462 fur ferric uptake reg 30.4 2.6E+02 0.0057 22.1 6.8 61 310-372 7-68 (148)
475 PRK13342 recombination factor 30.2 5.1E+02 0.011 25.0 13.4 166 87-280 154-331 (413)
476 KOG1114 Tripeptidyl peptidase 29.8 7.4E+02 0.016 26.8 12.7 41 330-370 1241-1281(1304)
477 KOG0551 Hsp90 co-chaperone CNS 29.8 2.7E+02 0.0058 25.7 7.1 95 322-416 83-181 (390)
478 PF01475 FUR: Ferric uptake re 29.8 95 0.0021 23.5 4.1 45 290-334 12-56 (120)
479 PF15469 Sec5: Exocyst complex 29.4 3.3E+02 0.0071 22.5 7.6 118 320-470 57-179 (182)
480 KOG0376 Serine-threonine phosp 29.0 43 0.00094 32.1 2.4 91 326-419 10-103 (476)
481 PF12796 Ank_2: Ankyrin repeat 28.8 1.7E+02 0.0037 20.3 5.1 14 130-143 73-86 (89)
482 KOG0376 Serine-threonine phosp 28.5 1.1E+02 0.0025 29.4 4.9 51 263-313 13-66 (476)
483 PRK09857 putative transposase; 28.2 3.7E+02 0.008 24.4 8.1 56 400-463 218-273 (292)
484 PF02847 MA3: MA3 domain; Int 28.1 1.6E+02 0.0035 21.8 5.1 25 259-283 7-31 (113)
485 KOG2471 TPR repeat-containing 28.0 5.9E+02 0.013 25.1 11.3 106 294-400 249-381 (696)
486 KOG0545 Aryl-hydrocarbon recep 27.7 4.3E+02 0.0093 23.3 8.8 94 254-348 178-292 (329)
487 KOG0991 Replication factor C, 27.5 4.2E+02 0.0092 23.2 11.9 49 227-279 169-217 (333)
488 PF04910 Tcf25: Transcriptiona 27.4 5.3E+02 0.011 24.3 14.5 125 319-458 39-167 (360)
489 PHA00425 DNA packaging protein 27.4 1.7E+02 0.0038 20.1 4.2 51 159-227 14-67 (88)
490 PF10475 DUF2450: Protein of u 27.3 4.7E+02 0.01 23.7 9.3 114 260-380 104-221 (291)
491 COG4003 Uncharacterized protei 27.0 96 0.0021 21.5 3.1 27 435-461 36-62 (98)
492 COG5108 RPO41 Mitochondrial DN 26.7 3.6E+02 0.0079 27.5 8.0 88 258-348 32-131 (1117)
493 PF09868 DUF2095: Uncharacteri 25.8 2.4E+02 0.0052 21.2 5.1 40 111-154 66-105 (128)
494 PRK09169 hypothetical protein; 25.2 1.3E+03 0.028 28.1 31.3 336 105-456 161-566 (2316)
495 PF01475 FUR: Ferric uptake re 25.1 2E+02 0.0043 21.7 5.1 50 110-162 11-60 (120)
496 KOG2422 Uncharacterized conser 25.0 7.2E+02 0.016 25.1 11.5 185 36-232 277-498 (665)
497 PRK14962 DNA polymerase III su 25.0 6.8E+02 0.015 24.7 12.9 43 287-330 246-288 (472)
498 PRK14700 recombination factor 25.0 5.3E+02 0.012 23.5 9.5 68 291-359 129-204 (300)
499 COG4003 Uncharacterized protei 24.9 2.3E+02 0.0049 19.8 4.5 31 111-145 36-66 (98)
500 KOG1839 Uncharacterized protei 24.1 6.7E+02 0.015 28.0 10.0 159 294-452 941-1121(1236)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-71 Score=559.54 Aligned_cols=450 Identities=29% Similarity=0.498 Sum_probs=439.3
Q ss_pred CCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHh
Q 011587 4 LPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLI 81 (482)
Q Consensus 4 ~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll 81 (482)
.||..||+.++.+|+ ++++.+.++|..|.+.|+.|+..+++.++..|+++ |+++.|.++|+.|..||..+||.+|
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHHHHHHHhcCCCCCeeeHHHHH
Confidence 589999999999997 78889999999999999999999999999999999 9999999999999999999999999
Q ss_pred cC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 011587 82 RC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157 (482)
Q Consensus 82 ~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (482)
.+ |++++|+++|++|.+.|+.| +..||+.++.+|++.+ . .+.+.+++..+.+.|+.||..+|++|+++|++.
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~-~--~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLG-S--ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCC-c--HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 98 99999999999999999999 9999999999999999 8 999999999999999999999999999999999
Q ss_pred CChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHH
Q 011587 158 KDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 158 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
|++++|.++|++|.++|+.+||++|.+|++ .|++++|+++|++|. ..|+.||..||++++.+|++.|++++|.
T Consensus 273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----~g~~~eA~~lf~~M~--~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----HGYSEEALCLYYEMR--DSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----CCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999999999999999999 999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
+++..|.+.|+ +++..++++|+++|++.|++++|.++|++|.++|..+||.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 346 ~i~~~m~~~g~--~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 346 QAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHhCC--CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999 6699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 397 (482)
||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|++.|+..+|++|+.+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999876799999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCeee
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYT 477 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 477 (482)
|...|+++.|..+++++.+.+| .+..+|..|+++|++.|+|++|.+++++|++.|+.+.|+++|+.+++..+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p--------~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGP--------EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCC--------CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 9999999999999999999888 67889999999999999999999999999999999999999999987644
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-68 Score=548.40 Aligned_cols=449 Identities=31% Similarity=0.580 Sum_probs=437.0
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 80 (482)
..||..||+.++.+|+ |+.+.+.++|..+.+.|+.|+..+++.|+..|+++ |++++|.++|+.|..||..+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCCeeeHHHH
Confidence 4699999999999998 88999999999999999999999999999999999 999999999999999999999999
Q ss_pred hcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 011587 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156 (482)
Q Consensus 81 l~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (482)
|.+ |++++|+++|++|.+.|+.| |..||++++.+|++.+ + ++.|.++++.+.+.|+.|+..+|+.|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g-~--~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLG-D--LDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccc-h--HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 999 99999999999999999999 9999999999999999 9 99999999999999999999999999999999
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|++++|.++|++|.++|..+||++|.+|++ .|+.++|+.+|++|. . +++||..||+.++.+|++.|.++.+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~-----~g~~~eA~~lf~~m~--~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRL-----NNRCFEALIFFRQML--L-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH-----CCCHHHHHHHHHHHH--h-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 9999999999999999999999999999999 999999999999996 4 6999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.+++..+.+.|+ .++..++++|+++|++.|++++|.++|+.+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+
T Consensus 509 ~~i~~~~~~~g~--~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 509 KEIHAHVLRTGI--GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHHhCC--CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999 669999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 396 (482)
.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ 665 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999996579999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCee
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 476 (482)
+|...|+.+.++...+++.+..| .+...|..|.+.|.+.|+|++|.++.+.|++.|+.++|+++|+.+++..
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p--------~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~ 737 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDP--------NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCC--------CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEE
Confidence 99999999999999999999999 7899999999999999999999999999999999999999999999875
Q ss_pred e
Q 011587 477 T 477 (482)
Q Consensus 477 ~ 477 (482)
+
T Consensus 738 ~ 738 (857)
T PLN03077 738 H 738 (857)
T ss_pred E
Confidence 4
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-65 Score=528.99 Aligned_cols=443 Identities=22% Similarity=0.333 Sum_probs=418.7
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTL 80 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 80 (482)
..||..||+.++++|+ +++..+.++|..+.+.|+.|+..+++.|+.+|+++ |+++.|.++|+.|+.||..+||++
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcchhHHH
Confidence 4689999999999986 67788899999999999999999999999999999 999999999999999999999999
Q ss_pred hcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 011587 81 IRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156 (482)
Q Consensus 81 l~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (482)
|.+ |++++|+++|.+|.+.|+.| |..||+.++.+|++.+ + ++.+.+++..+.+.|+.||..+|+.|+.+|++
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g-~--~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDP-DLMTITSVISACELLG-D--ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcC-C--hHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 998 99999999999999999999 9999999999999999 9 99999999999999999999999999999999
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|++++|.++|++|..||..+||++|.+|++ .|++++|+++|++|. ..|+.||..||+.++.+|++.|+++.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~-----~g~~~~A~~lf~~M~--~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEK-----NGLPDKALETYALME--QDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh-----CCCHHHHHHHHHHHH--HhCCCCCceeHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999999999 999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.++++.+.+.|+ .++..++++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|..+|++|.. ++
T Consensus 409 ~~l~~~~~~~g~--~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 409 VKLHELAERKGL--ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 999999999999 669999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLS 396 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 396 (482)
.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+++|.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 999999999999999999999999999999994 99999999999999999999999999999988 789999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-hcCCccCCcccEEEe
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-VKRVETEPGSSILQT 472 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~~~ 472 (482)
+|++.|+.++|.++|++|.+.|. .||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..++..++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~-------~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGV-------NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999998887 4899999999999999999999999999998 678888776554333
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-63 Score=508.21 Aligned_cols=450 Identities=16% Similarity=0.177 Sum_probs=421.9
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcC-CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNAL-KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNT 79 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 79 (482)
++++...|..++.+++ |++++|.++++.|.+.|+ +++..+++.++..|.+. |.+++|..+|+.|..||..+||.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~ 442 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNM 442 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHH
Confidence 3567778888888887 899999999999999995 57788889999999999 99999999999999999999999
Q ss_pred HhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 011587 80 LIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYA 155 (482)
Q Consensus 80 ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 155 (482)
+|.+ |+++.|.++|+.|.+.|+.| |..+|+++|.+|++.| + ++.|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G-~--vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSG-K--VDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCc-C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9998 99999999999999999999 9999999999999999 9 9999999999999999999999999999999
Q ss_pred hCCChhHHHHHhccCC----CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 156 SNKDISSGKKVFDQMP----MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 156 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
+.|++++|.++|++|. .||..+||.+|.+|++ .|++++|.++|++|.....|+.||..+|++++.+|++.|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k-----~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ-----SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999996 5899999999999999 999999999999997223689999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
++++|.++|+.|.+.|+ .++..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++
T Consensus 594 ~ldeA~elf~~M~e~gi--~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNI--KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 66999999999999999999999999999984 8999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CC
Q 011587 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PI 384 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 384 (482)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.||.+|++.|++++|.++|++| |+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999 499999999999999999999999999999998 89
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh----CC----------------
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS----AE---------------- 444 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g---------------- 444 (482)
.||..||+.++.+|++.|++++|.+++++|.+.+. .||..+|++++..|.+ ++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi-------~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~ 823 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGI-------KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 99999999999999999999999999999999998 4999999999876432 21
Q ss_pred ---CchHHHHHHHHhHhcCCccCCcccEEEeCC
Q 011587 445 ---RWPDVESVRKQMKVKRVETEPGSSILQTTT 474 (482)
Q Consensus 445 ---~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~ 474 (482)
..++|..+|++|.+.|+.|+..++..++..
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 236799999999999999998877666643
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-62 Score=498.96 Aligned_cols=438 Identities=17% Similarity=0.194 Sum_probs=411.4
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC----CCChhh
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD----PPNLFL 76 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~ 76 (482)
+.||..||+.++.+|+ |+++.|.++++.|.+.|+.||..+++.|+.+|+++ |+++.|.++|+.|. .||..+
T Consensus 433 ~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5699999999999999 89999999999999999999999999999999999 99999999999998 799999
Q ss_pred HHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH--hCCCCchhHHHHH
Q 011587 77 FNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK--RGFMFNVLVATTL 150 (482)
Q Consensus 77 ~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l 150 (482)
||.+|.+ |++++|+++|+.|.+.|+.| |..||+.+|.+|++.| + +++|.++|++|.+ .|+.||..+|+.+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G-~--~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSG-A--VDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 9999998 99999999999999999999 9999999999999999 9 9999999999987 6789999999999
Q ss_pred HHHHHhCCChhHHHHHhccCCC----CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHH
Q 011587 151 IHFYASNKDISSGKKVFDQMPM----RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV 226 (482)
Q Consensus 151 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~ 226 (482)
+.+|++.|++++|.++|+.|.+ |+..+||.+|.+|++ .|++++|.++|++|. ..|+.||..||+.++.+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-----~G~~deAl~lf~eM~--~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-----KGDWDFALSIYDDMK--KKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHH
Confidence 9999999999999999999974 577999999999999 999999999999999 99999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc----CCCHHHHHHHHHHHHhcCChH
Q 011587 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR----EKNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 302 (482)
|++.|++++|.+++++|.+.|+ .++..+|+++|.+|++.|++++|.++|++|. .||..+||.||.+|++.|+++
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999999 6699999999999999999999999999995 589999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----c---------
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----A--------- 369 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~--------- 369 (482)
+|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++++|.+. |+.||..+|++++..|.+ +
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVS 815 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999995 999999999999876432 2
Q ss_pred ----------CCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHH
Q 011587 370 ----------GHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436 (482)
Q Consensus 370 ----------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (482)
+..++|..+|++| |+.||..||+.++.++++.++.+.+..+++.+...+. .|+..+|+++
T Consensus 816 f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~-------~~~~~~y~~L 888 (1060)
T PLN03218 816 FDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD-------SQKQSNLSTL 888 (1060)
T ss_pred hhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC-------CcchhhhHHH
Confidence 1246799999999 9999999999999888888999999999988776555 4899999999
Q ss_pred HHHHHhCCCchHHHHHHHHhHhcCCccCCc
Q 011587 437 SNIYASAERWPDVESVRKQMKVKRVETEPG 466 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 466 (482)
++++.+. .++|..++++|...|+.|+..
T Consensus 889 i~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9998443 368999999999999999885
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-56 Score=449.94 Aligned_cols=382 Identities=23% Similarity=0.350 Sum_probs=365.1
Q ss_pred CCChhhHHHHhcC----CCCccHHHHHHHHHHCC-CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKG-LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 ~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~-~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
.++..+|+.+|.+ |++++|+++|++|...+ ..| |..||+.++.+|++.+ + ++.+.+++..|.+.|+.||..
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~-~--~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTL-PASTYDALVEACIALK-S--IRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHhCCCcchH
Confidence 4566789999887 99999999999999865 567 9999999999999999 9 999999999999999999999
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHH
Q 011587 146 VATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225 (482)
Q Consensus 146 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~ 225 (482)
+|+.++.+|++.|+++.|.++|++|++||..+||++|.+|++ .|++++|+++|++|. ..|+.||..||+.++.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~-----~g~~~~A~~lf~~M~--~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD-----AGNYREAFALFREMW--EDGSDAEPRTFVVMLR 232 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHH-----CcCHHHHHHHHHHHH--HhCCCCChhhHHHHHH
Confidence 999999999999999999999999999999999999999999 999999999999999 8999999999999999
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
+|++.|..+.+.+++..+.+.|+ .++..++++|+++|++.|++++|.++|++|.++|+.+||.||.+|++.|++++|.
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~--~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGV--VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCC--CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999 6699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCC
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK 385 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 385 (482)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++|. .
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~ 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C
Confidence 99999999999999999999999999999999999999999995 999999999999999999999999999999996 6
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh-cCCccC
Q 011587 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV-KRVETE 464 (482)
Q Consensus 386 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~ 464 (482)
||..+||.||.+|++.|+.++|.++|++|.+.|. .||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-------~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-------APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 8999999999999999999999999999999988 59999999999999999999999999999975 699998
Q ss_pred CcccEEEeCC
Q 011587 465 PGSSILQTTT 474 (482)
Q Consensus 465 ~~~~~~~~~~ 474 (482)
..++..++..
T Consensus 462 ~~~y~~li~~ 471 (697)
T PLN03081 462 AMHYACMIEL 471 (697)
T ss_pred ccchHhHHHH
Confidence 8776555544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.7e-26 Score=240.94 Aligned_cols=345 Identities=9% Similarity=-0.004 Sum_probs=223.8
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|+.++|...|+++.+.+ |.+...+..+...+...+ + +++|..+++.+.+.. +.+...|..+..+|...|++++|
T Consensus 547 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~--~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKG-Q--LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCC-C--HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44555555555544432 224444444555555544 4 555555555555432 33455556666666666666666
Q ss_pred HHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
...|+.+.+ .+...+..+...+.. .|++++|...|+++. . ..+.+..++..+...+...|++++|.+++
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAV-----MKNYAKAITSLKRAL--E-LKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--h-cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666655432 234455555556665 666666666666654 1 11223555666666666666666666666
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 318 (482)
+.+.+.. +.+...+..+...+...|++++|.+.|+++.+ |+..++..+..++.+.|++++|.+.++++.+.. +.
T Consensus 693 ~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 6666555 44555666666666777777777777766653 444556666677777777777777777776653 33
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...|.+.|+.++|..+|+++.+ ..+.+...+..+...+...|+ .+|++.+++. ...| +..++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 566677777777777777777777777776 335566777777777777777 6677777766 3334 4556677777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+...|++++|...++++++.+| .+..++..++.++.+.|++++|.+++++|.
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAP--------EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888999999999999999888 688888899999999999999999998876
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=4.1e-25 Score=233.81 Aligned_cols=410 Identities=10% Similarity=0.030 Sum_probs=312.9
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+.+.+..+++.+... .+.++.++..+...|... |++++|.+.|+... .|+ ...+..+... |++++|.+
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666666666665543 345566677777777777 78888888777654 222 2222222222 78888888
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
.|+.+.+.+ |.+..++..+...+.+.+ + .++|..+++++.+.+ +.+...+..++..|.+.|++++|.++++.+.
T Consensus 521 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~--~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 521 RFEKVLTID--PKNLRAILALAGLYLRTG-N--EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888887754 436677777777777777 7 888888888877664 4456677778888888888888888887775
Q ss_pred C---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC
Q 011587 172 M---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY 248 (482)
Q Consensus 172 ~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 248 (482)
. .+...|..+...+.. .|++++|...|+.+. .. .+.+...+..+..++...|++++|..+++++.+..
T Consensus 595 ~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLA-----AGDLNKAVSSFKKLL--AL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--Hh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3 356778888888888 888888888888875 22 23355677778888888888888888888887765
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011587 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS 325 (482)
Q Consensus 249 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 325 (482)
+.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+.+...+ |+..++..
T Consensus 666 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 741 (899)
T TIGR02917 666 --PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIK 741 (899)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHH
Confidence 56677888888888888888888888888764 355677778888888899999999998888764 44466777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 403 (482)
+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|...|++++|.+.|+++ .. +++..+++.+...+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 88888889999999999998887 45667888888889999999999999999887 33 3477888888889999999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.+|...++++.+..| .+..++..+..++.+.|++++|...++++.+.+..
T Consensus 820 -~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 820 -PRALEYAEKALKLAP--------NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred -HHHHHHHHHHHhhCC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 889999999999888 67788889999999999999999999999987653
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=6.4e-21 Score=181.50 Aligned_cols=296 Identities=12% Similarity=0.063 Sum_probs=223.1
Q ss_pred HHHHhCCChhHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC---HHHHHHHHH
Q 011587 152 HFYASNKDISSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT---DTTMVCVLS 225 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~~~~~l~~ 225 (482)
..+...|++++|...|+++.+ | +..++..+...+.. .|++++|..+++.+. ..+..++ ..++..+..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l--~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRR-----RGEVDRAIRIHQNLL--SRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-----cCcHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHH
Confidence 345566778888888877763 2 44567777777777 788888888888776 4322221 245677777
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC--C------HHHHHHHHHHHHh
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--N------VLTWTAMATGMAI 297 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~ 297 (482)
.+...|+++.|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+.+. + ...+..+...+.+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 8888888888888888887654 456777888888888888888888888877642 1 1235567777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 011587 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 377 (482)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +-.....++..++.+|...|++++|.+
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999888754 224567777888888999999999999998873 222224567888889999999999999
Q ss_pred HHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh---CCCchHHHHHH
Q 011587 378 FIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS---AERWPDVESVR 453 (482)
Q Consensus 378 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 453 (482)
.++++ ...|+...+..++..+.+.|++++|..+++++++..| +...+..++..+.. .|+.+++..++
T Consensus 271 ~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P---------~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 271 FLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP---------SLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---------CHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 99887 5567777778888889999999999999999888755 56677777776664 45888999999
Q ss_pred HHhHhcCCccCCccc
Q 011587 454 KQMKVKRVETEPGSS 468 (482)
Q Consensus 454 ~~m~~~~~~~~~~~~ 468 (482)
++|.++++.++|.+.
T Consensus 342 ~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 342 RDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhCCCCEE
Confidence 999999999988743
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.1e-20 Score=176.82 Aligned_cols=288 Identities=14% Similarity=0.042 Sum_probs=235.3
Q ss_pred hhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC-C------chhHHHHHHHHhcCC
Q 011587 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR-S------SATWNAMINGYCSQS 189 (482)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~ 189 (482)
...+ + +++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+... + ...+..+...|.+
T Consensus 46 ~~~~-~--~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~-- 119 (389)
T PRK11788 46 LLNE-Q--PDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK-- 119 (389)
T ss_pred HhcC-C--hHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence 3444 5 888999999998874 445678888888899999999999998877642 1 2457788889999
Q ss_pred cccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHcC
Q 011587 190 KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN--DVFIGTALVDMYSKC 267 (482)
Q Consensus 190 ~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~~~li~~~~~~ 267 (482)
.|++++|+.+|+++. .. .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ....+..+...+.+.
T Consensus 120 ---~g~~~~A~~~~~~~l--~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 120 ---AGLLDRAEELFLQLV--DE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred ---CCCHHHHHHHHHHHH--cC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 999999999999996 32 3456778999999999999999999999999887631110 122456778889999
Q ss_pred CChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 268 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
|++++|...|+++.+ | +...+..+...+.+.|++++|.++|+++.+.+......++..+..+|.+.|++++|...++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999874 3 4567888899999999999999999999876443335678889999999999999999999
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhcCC
Q 011587 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNV---HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 419 (482)
++.+. .|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+.+.
T Consensus 274 ~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 99884 466677788999999999999999999877 667999999988887764 5589999999999998665
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=2.1e-18 Score=184.03 Aligned_cols=404 Identities=11% Similarity=-0.008 Sum_probs=314.5
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCCh---hhHHHH-------------
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNL---FLFNTL------------- 80 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~---~~~~~l------------- 80 (482)
|++++|...++...+.. +.+...+..+..+|.+. |++++|+..|+... .|+. ..|..+
T Consensus 283 g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~---g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ---GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 88999999998888754 34567777888888888 99999999998765 2322 112111
Q ss_pred ---hcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 011587 81 ---IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157 (482)
Q Consensus 81 ---l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (482)
+..|++++|++.|+++.+.. |.+...+..+...+...+ + +++|.+.|+++++.. +.+...+..+...|. .
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g-~--~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARK-D--YAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 12299999999999999864 546777777888888888 8 999999999999874 345666777777774 4
Q ss_pred CChhHHHHHhccCCCCC------------chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHH
Q 011587 158 KDISSGKKVFDQMPMRS------------SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVL 224 (482)
Q Consensus 158 g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~ 224 (482)
++.++|..+++.+.... ...+..+...+.. .|++++|++.|++.. ...| +...+..+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-----~g~~~eA~~~~~~Al----~~~P~~~~~~~~LA 502 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-----QGKWAQAAELQRQRL----ALDPGSVWLTYRLA 502 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-----CCCHHHHHHHHHHHH----HhCCCCHHHHHHHH
Confidence 67899999988776321 2234556667777 999999999999987 3345 566788889
Q ss_pred HHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC----CH---------HHHHHH
Q 011587 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK----NV---------LTWTAM 291 (482)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l 291 (482)
..+.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+... +. ..+..+
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 99999999999999999998765 556666666677788899999999999988642 11 122345
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
...+...|++++|..+++. .+++...+..+...+.+.|+.++|...|++..+. -+.+...+..++..|...|+
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 6678899999999999882 2445667778889999999999999999999983 45578899999999999999
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC---CchhHHHHHHHHHhCCCc
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC---TSEDFVALSNIYASAERW 446 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 446 (482)
.++|++.++.. ...| +...+..+..++...|++++|.+++++++...++. .| +...+..+...+.+.|++
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-----~~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ-----PPSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC-----CcchhhHHHHHHHHHHHHHcCCH
Confidence 99999999987 4455 45667778888999999999999999999876520 01 224566778899999999
Q ss_pred hHHHHHHHHhH
Q 011587 447 PDVESVRKQMK 457 (482)
Q Consensus 447 ~~a~~~~~~m~ 457 (482)
++|...+++..
T Consensus 728 ~~A~~~y~~Al 738 (1157)
T PRK11447 728 QQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-19 Score=165.27 Aligned_cols=347 Identities=14% Similarity=0.124 Sum_probs=284.7
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhH-HHHHHHHHHhCCChhH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV-ATTLIHFYASNKDISS 162 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 162 (482)
|++++|+.+++.+.+.. |.....|..+..++...| + .+.|.+.|.+.++. .|+... .+.+....-..|++++
T Consensus 130 g~~~~al~~y~~aiel~--p~fida~inla~al~~~~-~--~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQG-D--LELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcC-C--CcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccch
Confidence 88888888888888854 557778888888888877 7 88888888888765 455443 3334444455688888
Q ss_pred HHHHhccCCC--CC-chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHH
Q 011587 163 GKKVFDQMPM--RS-SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGAC 238 (482)
Q Consensus 163 A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 238 (482)
|...+.+..+ |. ...|+.|...+.. +|+...|+.-|++.. .+.|+ ...|..|.+.|...+.++.|..
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~-----~Gei~~aiq~y~eAv----kldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNA-----QGEIWLAIQHYEEAV----KLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhh-----cchHHHHHHHHHHhh----cCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 8877766543 32 4578888888888 999999999999876 56675 4588999999999999999999
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 315 (482)
.|.++.... +....++..+...|...|+++.|+..|++..+ | -...|+.|..++-..|++.+|.+.+.+.....
T Consensus 274 ~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 998888776 67788888899999999999999999999875 4 35789999999999999999999999988763
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRS 393 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 393 (482)
. --....+.|...|...|.++.|..+|....+ -.+--....+.|...|-..|++++|+..+++. .++|+ ...|+.
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 2 2456778899999999999999999998887 23334567888999999999999999999988 88886 568899
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...|-..|+.+.|.+.+.+++..+| .-...++.|...|..+|++.+|+.-+++..+..
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nP--------t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINP--------TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCc--------HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999998 678888999999999999999999998877443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1.3e-18 Score=174.37 Aligned_cols=353 Identities=10% Similarity=-0.030 Sum_probs=267.8
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|++.|++.... .| +...|..+..++...+ + +++|.+.++..++.. +.+..+|..+..+|...|++++|
T Consensus 141 ~~~~~Ai~~y~~al~~--~p-~~~~~~n~a~~~~~l~-~--~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC--KP-DPVYYSNRAACHNALG-D--WEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred CCHHHHHHHHHHHHhc--CC-chHHHHHHHHHHHHhC-C--HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888887763 46 6667777777777777 7 888888888877763 33566777778888888888877
Q ss_pred HHHhccCCC---------------------------------CCchhHHHHHHHHh------------------------
Q 011587 164 KKVFDQMPM---------------------------------RSSATWNAMINGYC------------------------ 186 (482)
Q Consensus 164 ~~~~~~~~~---------------------------------~~~~~~~~li~~~~------------------------ 186 (482)
..-|..... .+...+..+...+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 214 LLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 654432210 01111111100000
Q ss_pred --cCC-----cccccchHHHHHHHHHhhhccCC-CCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH
Q 011587 187 --SQS-----KKAKDCAFNALVLFRDMLVDVSG-VKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257 (482)
Q Consensus 187 --~~~-----~~~~~~~~~a~~~~~~m~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 257 (482)
..+ ....+.+++|++.|+... ..+ ..| +...+..+...+...|++++|...+++.++.. +.....|
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al--~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~~~~~ 368 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKAL--DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRVTQSY 368 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHH--hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHH
Confidence 000 000357889999999987 443 334 45578888888899999999999999999876 5667788
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
..+...+...|++++|...|++..+ .+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCC
Confidence 9999999999999999999998864 3678899999999999999999999999988743 35677778888999999
Q ss_pred cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-H-------HHHHHHHHHHhcCCHh
Q 011587 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-I-------LWRSLLSACNVHGDVA 405 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~ 405 (482)
++++|...|++..+ ..+.+...++.+...+...|++++|.+.|++. .+.|+. . .++..+..+...|+++
T Consensus 448 ~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 448 SIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999988 44556788999999999999999999999886 444421 1 1222223344469999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
+|..+++++++.+| .+...+..++.++.+.|++++|...+++..+.
T Consensus 526 eA~~~~~kAl~l~p--------~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIIDP--------ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999988 67778999999999999999999999987644
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.5e-17 Score=177.61 Aligned_cols=415 Identities=10% Similarity=-0.010 Sum_probs=236.4
Q ss_pred HHHHhccCcchHHHHHHHHHHhcCCCCchHHH-HHHHHHhcCCCCCChHHHHHHhhcCC--CCChhh-HHHHhcC----C
Q 011587 13 LKLKAITTPSHIKQIHAQLITNALKSPPLYAQ-LIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFL-FNTLIRC----T 84 (482)
Q Consensus 13 ~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~-~~~ll~~----~ 84 (482)
++... |+.++|.+.++.+.+.. +++..... .+....... |++++|++.++.+. .|+... +..+-.. |
T Consensus 121 ll~~~-g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~---g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 121 LLATT-GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP---AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHhC-CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 34444 88888888888887653 33322211 122222334 78888888888876 343222 2211111 8
Q ss_pred CCccHHHHHHHHHHCCC------------------C--------------CCChhhH-------------------H--H
Q 011587 85 PPQDSVLVFAYWVSKGL------------------L--------------TFDDFTY-------------------V--F 111 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~~-------------------~--~ 111 (482)
+.++|++.|+++.+... . | +...+ . .
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p-~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFS-DGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCC-CchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 88888888887754321 0 1 10000 0 0
Q ss_pred HHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--CCc---hhHHHH-----
Q 011587 112 ALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSS---ATWNAM----- 181 (482)
Q Consensus 112 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----- 181 (482)
.-..+...+ + +++|...|++.++.. +.+..++..+...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 275 ~G~~~~~~g-~--~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 275 QGLAAVDSG-Q--GGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 112233344 5 999999999999874 44788899999999999999999999988753 321 122222
Q ss_pred -------HHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch
Q 011587 182 -------INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254 (482)
Q Consensus 182 -------i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 254 (482)
...+.+ .|++++|+..|++.. .. .+.+...+..+...+...|++++|++.|+++++.. +.+.
T Consensus 351 ~~~~~~~g~~~~~-----~g~~~eA~~~~~~Al--~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~ 419 (1157)
T PRK11447 351 YWLLIQQGDAALK-----ANNLAQAERLYQQAR--QV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD---PGNT 419 (1157)
T ss_pred HHHHHHHHHHHHH-----CCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCH
Confidence 334566 899999999999987 32 22356677788899999999999999999998876 4445
Q ss_pred hHHHHHHHHH------------------------------------------HcCCChHHHHHHHHhccC--C-CHHHHH
Q 011587 255 FIGTALVDMY------------------------------------------SKCGCLDNALLIFSRMRE--K-NVLTWT 289 (482)
Q Consensus 255 ~~~~~li~~~------------------------------------------~~~g~~~~A~~~~~~~~~--~-~~~~~~ 289 (482)
..+..+...| ...|++++|++.|++..+ | +...+.
T Consensus 420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~ 499 (1157)
T PRK11447 420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499 (1157)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555444444 334555555555555442 2 333444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-----------------
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV----------------- 352 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 352 (482)
.+...|.+.|++++|...++++.+.... +...+..+...+...++.++|...++.+... ..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHH
Confidence 5555555556666666666555543211 2223333333344555555665555544221 10
Q ss_pred ----------------------CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 353 ----------------------EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 353 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
+.+...+..+...+.+.|+.++|++.|++. ...| +...+..+...+...|++++|+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 112222333444444455555555555544 2233 3445555555555555555555
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
+.++.+.+..| .+...+..+..++.+.|++++|.++++++..
T Consensus 658 ~~l~~ll~~~p--------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 658 AQLAKLPATAN--------DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHhccCC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 55555555444 3444455555555556666666666655554
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-18 Score=159.36 Aligned_cols=367 Identities=13% Similarity=0.099 Sum_probs=303.7
Q ss_pred chHHHHHHHHHhcCCCCCChHHHHHHhhcCCC--CC-hhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHH
Q 011587 40 PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--PN-LFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFA 112 (482)
Q Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~l 112 (482)
...++-+.+++..+ |.++.|..+++.+.+ |+ +..|..+-.+ |+.+.|.+.|.+..+.. | +.....+-
T Consensus 116 ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P-~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKER---GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--P-DLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--c-chhhhhcc
Confidence 45667788889888 999999999999873 32 2334333222 99999999999999854 6 55544444
Q ss_pred HHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhccCCCCC---chhHHHHHHHHhcC
Q 011587 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRS---SATWNAMINGYCSQ 188 (482)
Q Consensus 113 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~ 188 (482)
+..+.+.. |++.+|...+.+.++. .|. ..+|+.|...+-..|++-.|++-|++..+-| ..+|-.|...|..
T Consensus 190 lgnLlka~--Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke- 264 (966)
T KOG4626|consen 190 LGNLLKAE--GRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE- 264 (966)
T ss_pred hhHHHHhh--cccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH-
Confidence 44444433 4499999999998876 343 5679999999999999999999999987543 4578888899999
Q ss_pred CcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC
Q 011587 189 SKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267 (482)
Q Consensus 189 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 267 (482)
.+.+++|+..|.+.. ...|+ ...+..+...|...|.++.|...|++.++.. |.-...|+.|.+++-..
T Consensus 265 ----~~~~d~Avs~Y~rAl----~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 265 ----ARIFDRAVSCYLRAL----NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDK 333 (966)
T ss_pred ----HhcchHHHHHHHHHH----hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhc
Confidence 999999999999876 55675 4578888888999999999999999999987 66788999999999999
Q ss_pred CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 268 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
|++.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|...+
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 999999999999874 35678899999999999999999999998875 443 567889999999999999999999
Q ss_pred HHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 344 DNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 344 ~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
++..+ +.|+ ...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|...|...|++.+|.+-++.+++..|
T Consensus 412 kealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP- 487 (966)
T KOG4626|consen 412 KEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP- 487 (966)
T ss_pred HHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-
Confidence 99986 4565 568999999999999999999999887 77774 56788999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHH
Q 011587 421 VTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~ 441 (482)
..+..|..++-++-
T Consensus 488 -------DfpdA~cNllh~lq 501 (966)
T KOG4626|consen 488 -------DFPDAYCNLLHCLQ 501 (966)
T ss_pred -------CCchhhhHHHHHHH
Confidence 45566665555443
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.9e-17 Score=165.59 Aligned_cols=316 Identities=11% Similarity=-0.029 Sum_probs=244.7
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|+.+++........ +...+..+..+....| + ++.|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 56 g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g-~--~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASS-Q--PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred CCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcC-C--HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999886533 4555555555666666 7 999999999998874 44677788888899999999999
Q ss_pred HHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
.+.|++... | +...+..+...+.. .|++++|...++.+. ... +.+...+..+ ..+...|++++|...+
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~-----~g~~~eA~~~~~~~~--~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVL-----MDKELQAISLARTQA--QEV-PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-----CCChHHHHHHHHHHH--HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 999988763 3 56678888888888 999999999998775 222 1223333333 3477889999999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNE----AIRLLDSMRD 313 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~ 313 (482)
+.+.+... ..+......+...+...|++++|+..|++..+ .+...+..+...+...|++++ |...|++..+
T Consensus 201 ~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 98877653 23444555667788899999999999998874 356778888889999999885 7899999887
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHH-H
Q 011587 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAIL-W 391 (482)
Q Consensus 314 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 391 (482)
... .+...+..+...+.+.|++++|...+++..+. -+.+...+..+..+|.+.|++++|.+.++++ ...|+... +
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 643 36678888889999999999999999998873 3445667778888999999999999999887 45565443 3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 392 RSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 392 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..+..++...|+.++|...|+++.+..|
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3456678889999999999999999887
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2.9e-17 Score=164.23 Aligned_cols=329 Identities=11% Similarity=-0.029 Sum_probs=267.1
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 181 (482)
+......++..+.+.| + ++.|..+++..+... +-+...+..++.+....|+++.|...|+++.. | +...+..+
T Consensus 41 ~~~~~~~~~~~~~~~g-~--~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l 116 (656)
T PRK15174 41 NEQNIILFAIACLRKD-E--TDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV 116 (656)
T ss_pred cccCHHHHHHHHHhcC-C--cchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4445556667777777 7 999999999999874 33455666677777889999999999999863 3 56778888
Q ss_pred HHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
...+.. .|++++|+..|++.. .+.| +...+..+...+...|++++|...++.+.... +.+...+..+
T Consensus 117 a~~l~~-----~g~~~~Ai~~l~~Al----~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~ 184 (656)
T PRK15174 117 ASVLLK-----SKQYATVADLAEQAW----LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC 184 (656)
T ss_pred HHHHHH-----cCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 889999 999999999999987 3445 56688889999999999999999999887776 3344444444
Q ss_pred HHHHHcCCChHHHHHHHHhccCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREK----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
. .+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+... .+...+..+...+...|++
T Consensus 185 ~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 L-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCc
Confidence 3 478899999999999997652 334455567788999999999999999998753 3567788889999999999
Q ss_pred HH----HHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 337 EE----GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 337 ~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
++ |...+++..+ ..+.+...+..+...+...|++++|...+++. ...| +...+..+..++.+.|++++|...
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 8999999988 34556788999999999999999999999988 4456 456777788899999999999999
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
++++.+..| .+...+..+..++...|++++|...+++..+...
T Consensus 341 l~~al~~~P--------~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 341 FVQLAREKG--------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHhCc--------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999999888 4555566677889999999999999999875543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.7e-16 Score=159.70 Aligned_cols=395 Identities=9% Similarity=-0.050 Sum_probs=291.4
Q ss_pred hhhHHHHHHHhccCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhc-
Q 011587 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIR- 82 (482)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~- 82 (482)
..-|+.+.... |+.++|.+++....... +.+...+..+..++... |++++|.++++... .|+ ...+..+..
T Consensus 18 ~~d~~~ia~~~-g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 18 IADWLQIALWA-GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL---KQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34466677777 99999999988887622 44455678888888888 99999999999954 343 323322222
Q ss_pred ---CCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 011587 83 ---CTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159 (482)
Q Consensus 83 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 159 (482)
.|++++|+..++++.+.. |.+.. +..+..++...+ + .++|...++++.+.. +.+...+..+...+...|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g-~--~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAG-R--HWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 299999999999999864 54666 777877888877 8 999999999999874 4466677778888889999
Q ss_pred hhHHHHHhccCCC-CCc------hhHHHHHHHHhcCCcccccch---HHHHHHHHHhhhccC-CCCcCHH-HHH----HH
Q 011587 160 ISSGKKVFDQMPM-RSS------ATWNAMINGYCSQSKKAKDCA---FNALVLFRDMLVDVS-GVKPTDT-TMV----CV 223 (482)
Q Consensus 160 ~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~~~~~~~~~---~~a~~~~~~m~~~~~-~~~p~~~-~~~----~l 223 (482)
.+.|.+.++.... |+. .....++......+....+++ ++|+..++.+. .. ...|+.. .+. ..
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll--~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE--ALWHDNPDATADYQRARIDR 243 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH--hhcccCCccchHHHHHHHHH
Confidence 9999999988775 110 122233333322111113344 77888888886 32 2233221 111 11
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-------HHHHHHHHHHHH
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-------VLTWTAMATGMA 296 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~ 296 (482)
+.++...|++++|...|+.+.+.+. +........+..+|...|++++|+.+|+++.+.+ ......+..++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~--~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQ--IIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 3345677999999999999998763 2122222335779999999999999999986422 234666777889
Q ss_pred hcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGV-----------KPN---AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
..|++++|...++.+..... .|+ ...+..+...+...|+.++|+.+++++.. ..+-+...+..+
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~l 399 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDY 399 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999999999999987531 123 22455677788899999999999999988 456678899999
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+...|++++|++.+++. .+.|+ ...+......+...|++++|+.+++++++..|
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999988 66675 56666777788899999999999999999988
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=5.5e-16 Score=158.43 Aligned_cols=395 Identities=10% Similarity=-0.018 Sum_probs=292.1
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC--C-ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhH
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--P-NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTY 109 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~ 109 (482)
+.++....-.+.+.... |+.++|++++..... | +...+..+-.. |++++|.++|+...+.. |.+...+
T Consensus 12 ~~~~~~~~d~~~ia~~~---g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWA---GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 44555566677777778 999999999998763 2 22223433222 99999999999999853 6467777
Q ss_pred HHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHHHHHHh
Q 011587 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAMINGYC 186 (482)
Q Consensus 110 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 186 (482)
..+...+...+ + +++|...++++++.. +.+.. +..+..++...|+.++|+..+++..+ | +...+..+...+.
T Consensus 87 ~~la~~l~~~g-~--~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 87 RGLILTLADAG-Q--YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78888888888 8 999999999999873 44566 88889999999999999999999874 3 5556667777888
Q ss_pred cCCcccccchHHHHHHHHHhhhccCCCCcCH------HHHHHHHHHhh-----ccCch---HHHHHHHHHHHHh-CCCCC
Q 011587 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTD------TTMVCVLSVSS-----QLGLL---EFGACVHGYMEKT-FYMPE 251 (482)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~p~ 251 (482)
. .+..+.|+..++... . .|+. .....++.... ..+++ +.|...++.+.+. ...|.
T Consensus 162 ~-----~~~~e~Al~~l~~~~--~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 162 N-----NRLSAPALGAIDDAN--L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred H-----CCChHHHHHHHHhCC--C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 8 899999999998775 2 3332 11222222222 22234 6778888888765 22221
Q ss_pred CchhHH---HHHHHHHHcCCChHHHHHHHHhccCCC--HH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHH
Q 011587 252 NDVFIG---TALVDMYSKCGCLDNALLIFSRMREKN--VL--TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP---NAV 321 (482)
Q Consensus 252 ~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~ 321 (482)
...... ...+.++...|++++|+..|+++.+.+ .. ....+...|...|++++|+..|+++.+..... ...
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 111111 111334567799999999999998632 11 22335778999999999999999987653221 134
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCcC---HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWG----------VEPH---IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP- 386 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 386 (482)
....+..++...|++++|..+++.+.+... -.|+ ...+..+...+...|+.++|+++++++ ...|
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456677788999999999999999987310 0123 234566778889999999999999998 4345
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
+...+..+...+...|++++|++.++++++..| .+...+...+..+.+.|++++|..+++++...
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P--------d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEP--------RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 677888899999999999999999999999999 78888899999999999999999999998753
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=1.5e-14 Score=148.45 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=155.8
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 308 (482)
++.++|...+.+..... + +......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~---P-d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ---P-DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC---C-chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444555454444433 1 222233334444577888888888877653 34445566667777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP- 386 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 386 (482)
+...+.. +++...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|+..+++. ...|
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8887764 223333333344445568999999999888873 467888888889999999999999999888 5566
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...++.+..++...|++++|...++++++..| .+...+..+..++...|++++|...+++..+..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P--------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLP--------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 566777788888999999999999999999998 788899999999999999999999999887544
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.4e-15 Score=152.65 Aligned_cols=248 Identities=13% Similarity=0.045 Sum_probs=202.1
Q ss_pred CChhHHHHHhccCCC-----C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhcc
Q 011587 158 KDISSGKKVFDQMPM-----R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQL 230 (482)
Q Consensus 158 g~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~ 230 (482)
+++++|.+.|+.... | ....|+.+...+.. .|++++|+..|++.. ...|+ ...|..+...+...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~-----~g~~~eA~~~~~kal----~l~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCL-----KGKHLEALADLSKSI----ELDPRVTQSYIKRASMNLEL 378 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHC
Confidence 578889998887653 2 44567888888888 999999999999986 33454 56888889999999
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
|++++|...++++++.. +.+..++..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..
T Consensus 379 g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998886 66788999999999999999999999999874 3 567788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH------HHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI------KHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
|++..+.. +-+...++.+...+...|++++|...|++..+. .-..+. ..++.....+...|++++|.+++++
T Consensus 456 ~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~k 533 (615)
T TIGR00990 456 FRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEK 533 (615)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99998763 335778888999999999999999999998873 211111 1122222334457999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 382 I-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 382 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
. .+.| +...+..+...+...|++++|...|+++.+...
T Consensus 534 Al~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 534 ALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6 5556 455788899999999999999999999998876
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.6e-14 Score=142.68 Aligned_cols=412 Identities=10% Similarity=-0.020 Sum_probs=270.9
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC-------CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-------TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~-------~~~~~a~~ 91 (482)
|+...|...+.+..+..-...+.+. .++.++... |+.++|+..++....|+...+..++.. |++++|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~---G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWA---GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHc---CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777665533222233 666677777 888888888888776655555444411 88888888
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
+|+++.+.. |.++..+..++..+...+ + .++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 124 ly~kaL~~d--P~n~~~l~gLa~~y~~~~-q--~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 124 LWQSSLKKD--PTNPDLISGMIMTQADAG-R--GGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhcC-C--HHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 888888754 546666666666667766 6 78888888877765 4555555445455544566656888887776
Q ss_pred C--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH------HHHHHHHh-----hccCchHHH-
Q 011587 172 M--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT------MVCVLSVS-----SQLGLLEFG- 236 (482)
Q Consensus 172 ~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~------~~~l~~~~-----~~~~~~~~a- 236 (482)
+ | +...+..+..++.+ .|-...|+++.+.-. .-+.+...- ....++.- ....++..+
T Consensus 197 ~~~P~n~e~~~~~~~~l~~-----~~~~~~a~~l~~~~p---~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQR-----NRIVEPALRLAKENP---NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HhCCCCHHHHHHHHHHHHH-----cCCcHHHHHHHHhCc---cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 3 3 45566666777777 666666766655432 111111110 11111111 011223333
Q ss_pred --HHHHHHHHHh-CCCCCCch---hHHHHHHHHHHcCCChHHHHHHHHhccCC----CHHHHHHHHHHHHhcCChHHHHH
Q 011587 237 --ACVHGYMEKT-FYMPENDV---FIGTALVDMYSKCGCLDNALLIFSRMREK----NVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 237 --~~~~~~~~~~-~~~p~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
..-++.+... +..|+... ....-.+-++...|++.++++.|+.+..+ ...+-..+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 3333333331 12122111 12223455777888999999999999843 23455677888999999999999
Q ss_pred HHHHHHhCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----------CcC---HHHHHHHHHHHhc
Q 011587 307 LLDSMRDCG-----VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV----------EPH---IKHYSCIVDLLGR 368 (482)
Q Consensus 307 ~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~li~~~~~ 368 (482)
+++.+.... ..++......|..++...+++++|..+++.+.+.... .|| ...+..++..+.-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999886543 1223444577888999999999999999999873110 122 2234456777888
Q ss_pred cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 369 AGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
.|+..+|++.++++ ...| |......+...+...|.+.+|++.++.+....| .+..+....+.++...|+|
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P--------~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP--------RSLILERAQAETAMALQEW 500 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--------ccHHHHHHHHHHHHhhhhH
Confidence 99999999999988 4445 788888888889999999999999988888888 6788888899999999999
Q ss_pred hHHHHHHHHhH
Q 011587 447 PDVESVRKQMK 457 (482)
Q Consensus 447 ~~a~~~~~~m~ 457 (482)
.+|..+.+.+.
T Consensus 501 ~~A~~~~~~l~ 511 (822)
T PRK14574 501 HQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHH
Confidence 99988886654
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.5e-13 Score=119.93 Aligned_cols=422 Identities=12% Similarity=0.032 Sum_probs=293.7
Q ss_pred hHHHHHHHhc-cCcchHHHHHHHHHHhcCCCCchHHHHHH---HHHhcCCCCCChHHHHHHhhcCC---CCChhhHHHHh
Q 011587 9 CFALLKLKAI-TTPSHIKQIHAQLITNALKSPPLYAQLIQ---LYCTKKASPQSTKIVHFVFTHFD---PPNLFLFNTLI 81 (482)
Q Consensus 9 ~~~~~l~~~~-~~~~~~~~i~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll 81 (482)
|=+.+++-.. +...++.-+++.|...|.+.+..+...|. .+|... .-+-.-.+.|-.|. +.+..+|-
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~---~~~~~E~~~Fv~~~~~~E~S~~sWK--- 191 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSS---NVPFAEWEEFVGMRNFGEDSTSSWK--- 191 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCC---CCcchhHHHHhhccccccccccccc---
Confidence 3344444332 78899999999999999888877665443 344433 22211122232332 22222332
Q ss_pred cCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
+-+-|.-+|+. .|....||.++|..+|+.. . .+.|.+++++......+.+..++|.+|.+-.-..+
T Consensus 192 ---~G~vAdL~~E~------~PKT~et~s~mI~Gl~K~~-~--~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-- 257 (625)
T KOG4422|consen 192 ---SGAVADLLFET------LPKTDETVSIMIAGLCKFS-S--LERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-- 257 (625)
T ss_pred ---cccHHHHHHhh------cCCCchhHHHHHHHHHHHH-h--HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc--
Confidence 22233333332 3448899999999999998 8 99999999999988778999999999986544433
Q ss_pred HHHHHhccCC----CCCchhHHHHHHHHhcCCcccccchH----HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 162 SGKKVFDQMP----MRSSATWNAMINGYCSQSKKAKDCAF----NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 162 ~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~----~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
.+++.+|. .||..|+|+++++..+ .|+++ .|++++.+|+ +-|+.|...+|..++..+++.++.
T Consensus 258 --K~Lv~EMisqkm~Pnl~TfNalL~c~ak-----fg~F~~ar~aalqil~EmK--eiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 258 --KKLVAEMISQKMTPNLFTFNALLSCAAK-----FGKFEDARKAALQILGEMK--EIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred --HHHHHHHHHhhcCCchHhHHHHHHHHHH-----hcchHHHHHHHHHHHHHHH--HhCCCcchhhHHHHHHHhcccCCc
Confidence 55555554 6899999999999999 66544 5678889998 999999999999999999998887
Q ss_pred HH-HHHHHHHHHH----hCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------C---CHHHHHHHHHHH
Q 011587 234 EF-GACVHGYMEK----TFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--------K---NVLTWTAMATGM 295 (482)
Q Consensus 234 ~~-a~~~~~~~~~----~~~~p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~ 295 (482)
.+ +..++..+.. ..+.| +.+...|...+..|.+..+.+.|.++-.-... + ...-|..+....
T Consensus 329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~li 408 (625)
T KOG4422|consen 329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLI 408 (625)
T ss_pred hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHH
Confidence 55 3344444433 22222 44667788889999999999988887665542 1 223566777788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-CH--
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HL-- 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~-- 372 (482)
|+....+..+..|+.|.-.-..|+..+...++++..-.+.++-.-++|..+.. +|..-+...-..++..+++.+ ++
T Consensus 409 cq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~t 487 (625)
T KOG4422|consen 409 CQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLT 487 (625)
T ss_pred HHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCC
Confidence 88888999999999998877788999999999999999999999999999988 576555555555555555544 11
Q ss_pred -HH----------HHHHHH-------cC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 373 -EE----------AYNFIM-------GI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 373 -~~----------A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+. |..+++ ++ ...-.....+...-.+.+.|..++|.+++.-..+.+.++. ..|.....
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip---~~p~lnAm 564 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP---RSPLLNAM 564 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC---CCcchhhH
Confidence 11 111221 11 2233455566667778899999999999999877665421 12444444
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 434 VALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.-+++.-.+..+.-.|..+++-|...+.+.
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 466667777888889999998887766643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2.3e-13 Score=136.90 Aligned_cols=385 Identities=14% Similarity=0.084 Sum_probs=271.0
Q ss_pred HHhcCCCCCChHHHHHHhhcCCC--CChh-hHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccC
Q 011587 49 YCTKKASPQSTKIVHFVFTHFDP--PNLF-LFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCS 121 (482)
Q Consensus 49 ~~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~ 121 (482)
..++. |+++.|+..|+...+ |+.. ....++.. |+.++|+..+++.... .|........+...+...+
T Consensus 43 i~~r~---Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~g- 116 (822)
T PRK14574 43 IRARA---GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEK- 116 (822)
T ss_pred HHHhC---CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcC-
Confidence 44555 999999999998873 4321 11122222 9999999999999831 1212333333345666667
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
+ +++|.++++++++.. +-++..+..++..+...++.++|++.++.+...++.....+..++...+ .++..+|++
T Consensus 117 d--yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~---~~~~~~AL~ 190 (822)
T PRK14574 117 R--WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA---TDRNYDALQ 190 (822)
T ss_pred C--HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh---cchHHHHHH
Confidence 7 999999999999885 4457778888899999999999999999998644333323444444422 556666999
Q ss_pred HHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchh-H----HHHHHHHH---H--cCCC-
Q 011587 202 LFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF-I----GTALVDMY---S--KCGC- 269 (482)
Q Consensus 202 ~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~----~~~li~~~---~--~~g~- 269 (482)
.++++. ...| +...+..+..++.+.|-...|.++..+-...-. +.+.. . ...++..- . ...+
T Consensus 191 ~~ekll----~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 191 ASSEAV----RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHH----HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 999997 3345 677788889999999999888877765332111 11100 0 01111110 0 1122
Q ss_pred --hHHHHHHHHhccC-----CCH-HH----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 011587 270 --LDNALLIFSRMRE-----KNV-LT----WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 270 --~~~A~~~~~~~~~-----~~~-~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 337 (482)
.+.|+.-++.+.. |.. .. .--.+-++...|++.++++.|+.|...|.+.-..+-..+..+|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 3344555555442 321 11 22345577889999999999999999886655567889999999999999
Q ss_pred HHHHHHHHhHHhcC----CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-------------C--CH-HHHHHHHH
Q 011587 338 EGLHLFDNMKSKWG----VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-------------P--DA-ILWRSLLS 396 (482)
Q Consensus 338 ~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-------------p--~~-~~~~~l~~ 396 (482)
+|+.++..+....+ .+++......|.-+|...+++++|..+++++ ... | |- ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999999977321 2334444678899999999999999999888 111 2 22 23444566
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+...|+..+|++.++++....| -|......+...+...|...+|...++.....
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP--------~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAP--------ANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 78899999999999999999999 89999999999999999999999999776643
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=9.8e-13 Score=135.21 Aligned_cols=382 Identities=9% Similarity=-0.028 Sum_probs=279.2
Q ss_pred HHHHhcCCCCCChHHHHHHhhcCCCCChhhH----HHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCc
Q 011587 47 QLYCTKKASPQSTKIVHFVFTHFDPPNLFLF----NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSL 122 (482)
Q Consensus 47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~ 122 (482)
+..+.+. +.++.++++.+ . .|..... -..+..+...++.+.+..|.+.. |.+......+--...+.| +
T Consensus 320 ~~~~~~~---~~~~~~~~~~~-~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~-~ 391 (987)
T PRK09782 320 LPVLLKE---GQYDAAQKLLA-T-LPANEMLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNG-Q 391 (987)
T ss_pred HHHHHhc---cHHHHHHHHhc-C-CCcchHHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcc-c
Confidence 6677777 88998888855 2 2222211 11111167777888888887752 325555555555556666 7
Q ss_pred chhhhHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhCCC---hhHHHHHhccCC-------------------------C
Q 011587 123 STLWLGRQIHVHVTKR-G-FMFNVLVATTLIHFYASNKD---ISSGKKVFDQMP-------------------------M 172 (482)
Q Consensus 123 ~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-------------------------~ 172 (482)
.++|.++++..... + -.++....+.++..|.+.+. ..++..+-..+. .
T Consensus 392 --~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 392 --SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred --HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 99999999998873 1 23355566688899988877 344443322111 0
Q ss_pred ---C--CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC
Q 011587 173 ---R--SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 173 ---~--~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
+ +...|..+..++. .++..+|+..+.+.. ...|+......+...+...|++++|...++++....
T Consensus 470 ~~p~~~~~~a~~~LG~~l~------~~~~~eAi~a~~~Al----~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYR------DTLPGVALYAWLQAE----QRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred cCCCCCCHHHHHHHHHHHH------hCCcHHHHHHHHHHH----HhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 1 3445555555554 457778999887765 334665554455566678999999999999875543
Q ss_pred CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV---LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 248 ~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
++...+..+..++.+.|+.++|..+|++..+.+. ..+..+.......|++++|...+++..+. .|+...+.
T Consensus 540 ----p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 540 ----MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred ----CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 2334466778889999999999999998876332 23333333444569999999999999886 45788899
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC
Q 011587 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHG 402 (482)
Q Consensus 325 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 402 (482)
.+..++.+.|+.++|...+++... .-+.+...+..+...+...|++++|++.+++. ...| +...+..+..++...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999998 34556778888889999999999999999988 5556 6778899999999999
Q ss_pred CHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccC
Q 011587 403 DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464 (482)
Q Consensus 403 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 464 (482)
++++|+..++++++..| .+..+.........+..+++.|.+-++.-...++...
T Consensus 692 d~~eA~~~l~~Al~l~P--------~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 692 DMAATQHYARLVIDDID--------NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CHHHHHHHHHHHHhcCC--------CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999 6777888888888889999999988877665555433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=9.4e-12 Score=110.14 Aligned_cols=341 Identities=12% Similarity=0.154 Sum_probs=235.1
Q ss_pred HHHHhhcCCCCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH
Q 011587 62 VHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137 (482)
Q Consensus 62 a~~~~~~~~~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 137 (482)
|.-+|+..++ ...+|.++|.+ ...++|.+++++-.+..++- +..+||.+|.+-.-.. ..+++.+|..
T Consensus 196 AdL~~E~~PK-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv-~~~aFN~lI~~~S~~~-------~K~Lv~EMis 266 (625)
T KOG4422|consen 196 ADLLFETLPK-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKV-YREAFNGLIGASSYSV-------GKKLVAEMIS 266 (625)
T ss_pred HHHHHhhcCC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee-eHHhhhhhhhHHHhhc-------cHHHHHHHHH
Confidence 3345555543 34577788877 77788888888888777777 8888888887754333 3678888888
Q ss_pred hCCCCchhHHHHHHHHHHhCCChhHHH----HHhccCC----CCCchhHHHHHHHHhcCCcccccchH-HHHHHHHHhhh
Q 011587 138 RGFMFNVLVATTLIHFYASNKDISSGK----KVFDQMP----MRSSATWNAMINGYCSQSKKAKDCAF-NALVLFRDMLV 208 (482)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~~~~-~a~~~~~~m~~ 208 (482)
..+.||..|+|+++.+..+.|+++.|. +++.+|+ +|+..+|..+|..+++ .++.. .+..++.++.-
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r-----e~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR-----ESDPQKVASSWINDIQN 341 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc-----cCCchhhhHHHHHHHHH
Confidence 888888888888888888888776654 4444554 5788888888888887 55543 33444444331
Q ss_pred c--cCC---CCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhC---CCCCC--chhHHHHHHHHHHcCCChHHHHHHH
Q 011587 209 D--VSG---VKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF---YMPEN--DVFIGTALVDMYSKCGCLDNALLIF 277 (482)
Q Consensus 209 ~--~~~---~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~--~~~~~~~li~~~~~~g~~~~A~~~~ 277 (482)
. ... +.| |..-|...+..|.+..+.+.|.++..-+.... .+|+. ...-|..+..+.|.....+.-..+|
T Consensus 342 ~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 342 SLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222 233 45567788899999999999988877665422 12111 2234566778888888999999999
Q ss_pred HhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-c--------HH-----HH
Q 011587 278 SRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-L--------VE-----EG 339 (482)
Q Consensus 278 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~--------~~-----~a 339 (482)
+.|.. |+..+...++.+....|.++-.-++|..++..|..-+...-..++..+++.. . +. -|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 99874 7888888889999999999999999999988886555555555555555433 1 10 11
Q ss_pred HHHH-------HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 340 LHLF-------DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 340 ~~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
..++ .++.+ ........+.+.-.+.+.|+.++|.++|... +..|......-++....+.++..
T Consensus 502 ad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 502 ADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1122 22222 2334556777788899999999999988655 33455555556777778889999
Q ss_pred HHHHHHHHHHhcCC
Q 011587 406 LGEKVGKILLQLQP 419 (482)
Q Consensus 406 ~a~~~~~~~~~~~~ 419 (482)
.|..+++-+...+.
T Consensus 579 qA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 579 QAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999988776
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=5.1e-11 Score=110.92 Aligned_cols=357 Identities=12% Similarity=0.017 Sum_probs=273.5
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
+.++-|..+|....+ +.|.+...|......--..| . .+....+|++++.. .+-....|-.....+-..||+..|
T Consensus 530 ~~~~carAVya~alq--vfp~k~slWlra~~~ek~hg-t--~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 530 PAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHG-T--RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred chHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcC-c--HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHH
Confidence 334445555555555 33534445544443333333 4 77777777777765 233455566666677777888888
Q ss_pred HHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 164 KKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
..++...-+ .+...|-.-+..... +..+++|..+|.+.. ...|+...|.--++.---.+..++|.+++
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~e-----n~e~eraR~llakar----~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFE-----NDELERARDLLAKAR----SISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhc-----cccHHHHHHHHHHHh----ccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 888776643 256677777777777 888999999998876 56677777777777777788899999999
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...=-+.|.+-.|..++++....+..
T Consensus 675 Ee~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 675 EEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 8888876 66677888889999999999999999887765 4 4566777777778888999999999999888655
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 397 (482)
+...|-..|..-.+.|+.+.|..++.+..+ .++.+...|..-|....+.++-..+.+.+++.. -|....-.+...
T Consensus 752 -~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~l 826 (913)
T KOG0495|consen 752 -NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKL 826 (913)
T ss_pred -cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHH
Confidence 788899999999999999999999999998 577788889888888888888777888888763 355666667777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeC
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTT 473 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 473 (482)
+-...+++.|.+.|.++++.++ .+..+|..+...+.+.|.-++-.+++.+.... .|..+-.|.-+.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~--------d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDP--------DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCC--------ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 8888999999999999999999 78899999999999999999999999887744 344555554443
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.4e-12 Score=114.03 Aligned_cols=376 Identities=9% Similarity=0.038 Sum_probs=272.0
Q ss_pred cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChhh--HHHH
Q 011587 35 ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFT--YVFA 112 (482)
Q Consensus 35 g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~l 112 (482)
+..-|....-+.-..+... |..+.|+..|-.....-+..|.+.+..++.-.-++........+ |.|..- =-.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~---~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l--~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKEL---GLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL--PSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhh---chHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC--cccchHHHHHHH
Confidence 4455555555555566677 88888988888877666677777777644444444444444332 212111 1224
Q ss_pred HHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC------CchhHHHHHHHHh
Q 011587 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR------SSATWNAMINGYC 186 (482)
Q Consensus 113 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~ 186 (482)
..++.... . .+++.+=.+.....|++-+...-+....+.....|+|.|+.+|+++.+. |..+|+.++-.-.
T Consensus 234 ~~a~~el~-q--~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 234 KKAYQELH-Q--HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHH-H--HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 45555666 6 8888888888888887777766666666777889999999999999853 5677777764332
Q ss_pred cCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc
Q 011587 187 SQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266 (482)
Q Consensus 187 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~ 266 (482)
.. ..-.--|..+++ -. +--+.|+.++.+-|+-.++.++|..+|+..++.+ +.....|+.+.+-|..
T Consensus 311 ~~----skLs~LA~~v~~-----id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 311 DK----SKLSYLAQNVSN-----ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVE 376 (559)
T ss_pred hh----HHHHHHHHHHHH-----hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHH
Confidence 20 111112233322 11 2345688888899999999999999999999998 7789999999999999
Q ss_pred CCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 267 CGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
..+...|.+-|+...+ .|-..|-.|.++|...+.+--|+-.|++..+.. +-|...+.+|..+|.+.++.++|++.|
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999875 477889999999999999999999999998864 337889999999999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCC-CC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIK-PD-AILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
.+... .-..+...+..|.+.|-+.++.++|...|++. |.. |. ...---|..-+.+.+++++|.......
T Consensus 456 krai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 456 KRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99998 33456789999999999999999998877654 322 21 112222444567788888887766665
Q ss_pred HhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..-++ ..++|..+++++++..
T Consensus 534 ~~~~~-------------------------e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 534 LKGET-------------------------ECEEAKALLREIRKIQ 554 (559)
T ss_pred hcCCc-------------------------hHHHHHHHHHHHHHhc
Confidence 55433 3467777777776543
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.1e-15 Score=136.19 Aligned_cols=256 Identities=15% Similarity=0.084 Sum_probs=113.8
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
+...+.+ .|++++|+++++... ....+|+. .-|..+...+...++++.|...++++...+ +.+...+..
T Consensus 14 ~A~~~~~-----~~~~~~Al~~L~~~~--~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQ-----RGDYEKALEVLKKAA--QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-----ccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc---ccccccccc
Confidence 3556667 899999999996543 23324544 444556667778899999999999999887 456777788
Q ss_pred HHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~ 336 (482)
++.. ...+++++|.++++..-+ ++...+..++..+.+.++++++..+++.+.... ..++...|..+...+.+.|+.
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 8887 799999999999887743 566677888889999999999999999987643 345777888888999999999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
++|...+++..+. .+-|......++..+...|+.+++.++++.. ..+.|...+..+..++...|+.++|...+++.
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999999984 3445778889999999999999988887766 22346667888999999999999999999999
Q ss_pred HhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 415 LQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+..| .|+.....++.++...|+.++|..+.++..
T Consensus 241 ~~~~p--------~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 LKLNP--------DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHST--------T-HHHHHHHHHHHT----------------
T ss_pred ccccc--------cccccccccccccccccccccccccccccc
Confidence 99999 899999999999999999999999887654
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1e-11 Score=110.66 Aligned_cols=272 Identities=13% Similarity=0.055 Sum_probs=210.2
Q ss_pred HHHhCCChhHHHHHhccCCCCCchhHH-----HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 153 FYASNKDISSGKKVFDQMPMRSSATWN-----AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 153 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
-|.+.|+++.|.++++-..+.|..+-. .-+--|.+ | ..++..|.+.-+... .--.-+......-.+..
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flq-g---gk~~~~aqqyad~al---n~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQ-G---GKDFADAQQYADIAL---NIDRYNAAALTNKGNIA 500 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHh-c---ccchhHHHHHHHHHh---cccccCHHHhhcCCcee
Confidence 467899999999999877765443322 22222333 1 334555655555443 11122333333334445
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc---CCCHHHHHHHHHHHHhcCChHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGNEA 304 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 304 (482)
...|++++|...|++.+.... . -......+.-.+-..|++++|+++|-++. ..++.+...+.+.|-...++.+|
T Consensus 501 f~ngd~dka~~~ykeal~nda--s-c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA--S-CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch--H-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 568999999999999998774 2 33333345556788999999999998776 46888888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C
Q 011587 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P 383 (482)
Q Consensus 305 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 383 (482)
++++-..... ++.|+.....|...|-+.|+-..|.+.+-.--+ -++.+..+...|...|....-+++|+.+|++. -
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999776654 556788899999999999999999999877766 57788999999999999999999999999998 6
Q ss_pred CCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 384 IKPDAILWRSLLSAC-NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 384 ~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
+.|+..-|..|+..| .+.|++.+|.++++...+..| -+..+...|++.+...|.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp--------edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP--------EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc--------cchHHHHHHHHHhccccc
Confidence 789999999998876 467999999999999999999 799999999999988875
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.4e-12 Score=124.81 Aligned_cols=398 Identities=13% Similarity=0.022 Sum_probs=278.1
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC----hhhHHH--HhcC----CCCccHHHHHHHHHHCCCCCCC-
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN----LFLFNT--LIRC----TPPQDSVLVFAYWVSKGLLTFD- 105 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~--ll~~----~~~~~a~~~~~~m~~~~~~p~~- 105 (482)
+.++++.+.|.+.|.-. |++..+..+...+...+ ..+-+. +-++ |++++|..+|.+..+.. |.+
T Consensus 267 ~~nP~~l~~LAn~fyfK---~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK---KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCc
Confidence 45677888888888777 88888888777655322 111111 1111 88888888887777644 312
Q ss_pred hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhHHHHHhccCCCC--------
Q 011587 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK----DISSGKKVFDQMPMR-------- 173 (482)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~-------- 173 (482)
...+.-+...+.+.+ + ++.+...|+.+.+.. +-+..+...|...|+..+ ..+.|..++....++
T Consensus 342 ~l~~~GlgQm~i~~~-d--le~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRG-D--LEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred cccccchhHHHHHhc-h--HHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 334455667777777 7 888888888877763 445566666666666554 344555554443321
Q ss_pred ---------------------------------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccC-CCCcCH--
Q 011587 174 ---------------------------------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-GVKPTD-- 217 (482)
Q Consensus 174 ---------------------------------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~p~~-- 217 (482)
.+...|.+...+.. .|++..|...|.....+.. ...+|.
T Consensus 418 l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~-----~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR-----LGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH-----hcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 22333444444444 7888888888888762100 122222
Q ss_pred ----HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHH
Q 011587 218 ----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTA 290 (482)
Q Consensus 218 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 290 (482)
.+--.+..+.-..++.+.|.++|..+.+.. |.-+..|-.++...-..+...+|..+++...+ .+...++.
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 233345566677889999999999999887 55555566666555556788899999998874 57778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhcCCCcCHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCH------------AGLVEEGLHLFDNMKSKWGVEPHIK 357 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~ 357 (482)
+...+.+...+..|.+-|+...+. ...+|+++.-.|...|.. .+..++|.++|.+..+ .-+-|..
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~y 647 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMY 647 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhh
Confidence 888999999999998877766543 223577766666664432 3457889999999988 5567888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHH
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
.-+-+.-.++..|++.+|..+|.+. ...-...+|-.+.++|..+|++..|.++|+...+.... ..++.+...
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~------~~~~~vl~~ 721 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK------KNRSEVLHY 721 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCHHHHHH
Confidence 8888999999999999999999987 22335567888999999999999999999999887662 257888899
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhc
Q 011587 436 LSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
|.+++.+.|.+.+|.+.+......
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999987766543
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.7e-11 Score=117.69 Aligned_cols=422 Identities=10% Similarity=-0.022 Sum_probs=212.4
Q ss_pred cCcchHHHHHHHHHHh--cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC----------CCC
Q 011587 19 TTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----------TPP 86 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~----------~~~ 86 (482)
++...+..++.....- ...||+.+.. -.-+.+. ++.+.|+..|....+-|+...++++.. ..+
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl---~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGI--GHCFWKL---GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhc---cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 5556666666654432 3444433221 1223444 566666666665554444333333332 334
Q ss_pred ccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCC--chhHHHHHHHHHHhCCChhHHH
Q 011587 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF--NVLVATTLIHFYASNKDISSGK 164 (482)
Q Consensus 87 ~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 164 (482)
..++.++...-... |.|+...+.|.+.|...+ + +..+..+...+......- -...|--+.++|...|++++|.
T Consensus 253 ~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~-d--y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN--NENPVALNHLANHFYFKK-D--YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcc-c--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 44444444444322 335555666666665555 5 666666666665543111 1233555666666666666666
Q ss_pred HHhccCCCC--C--chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC----chHHH
Q 011587 165 KVFDQMPMR--S--SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG----LLEFG 236 (482)
Q Consensus 165 ~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a 236 (482)
..|-+..+. + +..+--+...+.+ .|+.+.+...|+... ...+-+..|...+...|...+ ..+.|
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~-----~~dle~s~~~fEkv~---k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIK-----RGDLEESKFCFEKVL---KQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHH-----hchHHHHHHHHHHHH---HhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 666554421 1 2233344555555 566666666665553 122223344444444444432 22333
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc--------CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR--------EKNVLTWTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~ 308 (482)
..++....+.. +.|...|-.+...+-...-+.. +.+|.... .......|.+...+...|++.+|...|
T Consensus 400 ~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 400 SNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHhcc---cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 33333332222 2233333333333332221111 22222111 123334444444444444555554444
Q ss_pred HH--------------------------------------------HHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 011587 309 DS--------------------------------------------MRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 309 ~~--------------------------------------------m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.. ..... |+ ...|-.+.......++..+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 44 43321 11 111222221112234445555555
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH----HcCCCCCCHHHHHHHHHHHHh------------cCCHhHH
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI----MGIPIKPDAILWRSLLSACNV------------HGDVALG 407 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~p~~~~~~~l~~~~~~------------~g~~~~a 407 (482)
..... ....++..++.+...+.+...+..|.+-| .+....+|+.+.-+|...|.. .+..++|
T Consensus 554 k~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 554 KDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 55554 33334444444555566655666555533 333234666666666665442 3457789
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCee
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHY 476 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~ 476 (482)
+++|.++++.+| .|...=+.+.-+++..|++.+|..+|.+.++..... .-.|+-+..+|
T Consensus 632 lq~y~kvL~~dp--------kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~--~dv~lNlah~~ 690 (1018)
T KOG2002|consen 632 LQLYGKVLRNDP--------KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF--EDVWLNLAHCY 690 (1018)
T ss_pred HHHHHHHHhcCc--------chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC--CceeeeHHHHH
Confidence 999999999999 899999999999999999999999999999776632 22355554443
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.1e-11 Score=117.07 Aligned_cols=291 Identities=11% Similarity=-0.029 Sum_probs=212.4
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHH-HHHHHhCCChhHHHHHhccCCC--CCchhHH--HHHHHH
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL-IHFYASNKDISSGKKVFDQMPM--RSSATWN--AMINGY 185 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~ 185 (482)
.+..+..... .|+++.|++.+....+.. +++..+..+ .....+.|+++.|.+.|.++.+ |+...+. .....+
T Consensus 87 ~~~~gl~a~~-eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 87 QTEQALLKLA-EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3444444443 444888887777655442 223333333 4444788889999988888764 3332222 224566
Q ss_pred hcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch-----hHHHHH
Q 011587 186 CSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV-----FIGTAL 260 (482)
Q Consensus 186 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-----~~~~~l 260 (482)
.. .|+++.|...++++. +.. +-+...+..+...+.+.|+++.+.+++..+.+.+..++... ..|..+
T Consensus 164 l~-----~g~~~~Al~~l~~~~--~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 164 LA-----RNENHAARHGVDKLL--EVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HH-----CCCHHHHHHHHHHHH--hcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 77 888999999998886 222 33567788888888899999999999999988875321111 133344
Q ss_pred HHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 337 (482)
+.......+.+...++++.+.+ .+......+...+...|+.++|..++++..+. .|+... .++.+....++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChH
Confidence 4444555667778888888764 47778888999999999999999999998874 445432 2344555669999
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
++.+..+...+ ..+-|......+...+.+.+++++|.+.|+.. ...|+..++..+...+.+.|+.++|.+++++...
T Consensus 312 ~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 312 QLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999998 44556777889999999999999999999988 7789999999999999999999999999998876
Q ss_pred cC
Q 011587 417 LQ 418 (482)
Q Consensus 417 ~~ 418 (482)
.-
T Consensus 390 ~~ 391 (398)
T PRK10747 390 LT 391 (398)
T ss_pred hh
Confidence 43
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.9e-11 Score=109.04 Aligned_cols=252 Identities=11% Similarity=0.020 Sum_probs=177.8
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
+|+++.|+++++-...+......-..+-...+....-.+++..|.++-+..+... ..+......-.+.-...|++++
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCcHHH
Confidence 6666666666666541111111111111122222223345555666555555443 2333333334444557799999
Q ss_pred HHHHHHhccCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 273 ALLIFSRMREKNVLTWTAMAT---GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 273 A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
|.+.|++....|...-.+|.. .+-..|+.++|+++|-++..- ..-+......+...|-...+...|++++.+...
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s- 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS- 586 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-
Confidence 999999999877665444433 467789999999999887543 233677778888899999999999999988876
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
-++.|+....-|.+.|-+.|+-..|.+..-+- ..-| +..+..-|..-|....-.+++...|+++.-.+|
T Consensus 587 -lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-------- 657 (840)
T KOG2003|consen 587 -LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-------- 657 (840)
T ss_pred -cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc--------
Confidence 67888999999999999999999999887655 4334 788888888888888888999999998876665
Q ss_pred CCchhHHHHHHH-HHhCCCchHHHHHHHHhHhc
Q 011587 428 CTSEDFVALSNI-YASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 428 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 459 (482)
+..-|..++.. +.+.|++.+|..++++..++
T Consensus 658 -~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 -NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77788766655 45789999999999988654
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=3.2e-12 Score=120.86 Aligned_cols=276 Identities=11% Similarity=0.012 Sum_probs=206.2
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHh--hhccCcchhhhHHHHHHHHHHhCCCCchhHHH--HHHHHHHhCCC
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC--ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT--TLIHFYASNKD 159 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 159 (482)
|++++|.+.+....+..- ++. .+.++.+. .+.| + ++.|.+.+.++.+. .|+...+. .....+...|+
T Consensus 98 Gd~~~A~k~l~~~~~~~~---~p~-l~~llaA~aA~~~g-~--~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE---QPV-VNYLLAAEAAQQRG-D--EARANQHLERAAEL--ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCHHHHHHHHHHHHhccc---chH-HHHHHHHHHHHHCC-C--HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCC
Confidence 999999988887666431 223 33333333 4444 5 99999999999875 55554333 34678899999
Q ss_pred hhHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH-------HHHHHHHHHhhc
Q 011587 160 ISSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD-------TTMVCVLSVSSQ 229 (482)
Q Consensus 160 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-------~~~~~l~~~~~~ 229 (482)
++.|.+.++.+.+ | ++.....+...|.+ .|++++|.+++..+. +.+..++. .+|..++.....
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----~gdw~~a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----TGAWSSLLDILPSMA--KAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HHhHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998864 3 67788889999999 999999999999998 55544322 133333444444
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 309 (482)
..+.+...++++.+.+.- +.++.....+...+...|+.++|.+.+++..+.....--.++.+....++++++.+..+
T Consensus 242 ~~~~~~l~~~w~~lp~~~---~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKT---RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred hcCHHHHHHHHHhCCHHH---hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 455566666666654433 55788889999999999999999999988875322222334455556799999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...+... -|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 319 QQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987743 36667888899999999999999999999874 799999999999999999999999998864
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.5e-11 Score=108.81 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=189.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC--CCCchhHHHHHHHHhcCCcccccchHHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVL 202 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~ 202 (482)
+..|.++|+.-.+. .|+..+|++.|+.=.+-+.++.|..+++... .|++.+|--..+--.+ .|+...|..+
T Consensus 157 i~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k-----~g~~~~aR~V 229 (677)
T KOG1915|consen 157 IAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEK-----HGNVALARSV 229 (677)
T ss_pred cHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHh-----cCcHHHHHHH
Confidence 55555555554433 4555555555555555555555555555432 3455555444444444 4555555555
Q ss_pred HHHhhhccCCC-CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH----
Q 011587 203 FRDMLVDVSGV-KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF---- 277 (482)
Q Consensus 203 ~~~m~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~---- 277 (482)
|..... .-|- .-+...+.+....-.+...++.|..+|+..+++-.. ......|..+...--+-|+.....+..
T Consensus 230 yerAie-~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIE-FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 544431 0010 001112222222223334444555555554443210 011333444443333444443333322
Q ss_pred ----HhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---hccCcHHHHH
Q 011587 278 ----SRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA-------VTFTSLFAAC---CHAGLVEEGL 340 (482)
Q Consensus 278 ----~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a~ 340 (482)
+.+.+. |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+=.++ ....+++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 112111 4456766777777788999999999998876 45522 1222222222 2467888889
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHH----hccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLL----GRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
++++...+ -++....||.-+--.| .++.++..|.+++... |.-|-..+|...|..-.+.++++....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99988887 5666666666555444 3677888898888877 888888889888888888899999999999999
Q ss_pred hcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCc
Q 011587 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPG 466 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 466 (482)
+-+| -|..+|...+..-...|+++.|..+|+-..+....-.|.
T Consensus 465 e~~P--------e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 465 EFSP--------ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hcCh--------HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 9888 688888888888888888888888888777665444443
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2e-11 Score=116.12 Aligned_cols=297 Identities=11% Similarity=-0.012 Sum_probs=206.2
Q ss_pred hHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCChhHHHHHhccCCC--CCc--hhHHHHH
Q 011587 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV-LVATTLIHFYASNKDISSGKKVFDQMPM--RSS--ATWNAMI 182 (482)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li 182 (482)
....+..+..... .|+++.|++.+....+. .|++ ..+-.....+...|+.+.|.+.|++..+ |+. ...-...
T Consensus 84 ~~~~~~~glla~~-~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 84 AQKQTEEALLKLA-EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 4445555555555 56688888888877665 3443 3334445677788888888888887542 332 2333346
Q ss_pred HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch-----hHH
Q 011587 183 NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV-----FIG 257 (482)
Q Consensus 183 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-----~~~ 257 (482)
..+.. .|+++.|...++.+. ... +-+...+..+...+...|+++.+.+.+..+.+.+..++.+. ..+
T Consensus 161 ~l~l~-----~~~~~~Al~~l~~l~--~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~ 232 (409)
T TIGR00540 161 RILLA-----QNELHAARHGVDKLL--EMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE 232 (409)
T ss_pred HHHHH-----CCCHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 66777 888999999998886 332 33566788888888999999999999999988875221111 111
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhcc
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF-TSLFAACCHA 333 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~ 333 (482)
..++..-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+.........+ ..........
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC
Confidence 1112111222334455556666653 47788889999999999999999999999886432221111 1222233446
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHc--C-CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHI--KHYSCIVDLLGRAGHLEEAYNFIMG--I-PIKPDAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
++.+.+.+.++...+. .+-|. ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888999999988874 33334 6677889999999999999999994 3 66899999999999999999999999
Q ss_pred HHHHHHHhc
Q 011587 409 KVGKILLQL 417 (482)
Q Consensus 409 ~~~~~~~~~ 417 (482)
+++++....
T Consensus 391 ~~~~~~l~~ 399 (409)
T TIGR00540 391 AMRQDSLGL 399 (409)
T ss_pred HHHHHHHHH
Confidence 999987653
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6.4e-13 Score=123.96 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=225.2
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC------CCchhHHHHHHHHhcCCcccccchHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM------RSSATWNAMINGYCSQSKKAKDCAFN 198 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~ 198 (482)
..+|..+|..+... +.-+..+...+..+|...+++++|+.+|+.+.+ .+...|.+.+-.+-+ . -
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~----v 404 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----E----V 404 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----h----H
Confidence 77888888884443 344557778889999999999999999998874 277889988876544 1 1
Q ss_pred HHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 199 a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
++..+.+-. -.--+-.+.+|.++.++|.-.++.+.|.+.|+++.+.+ +....+|+.+..-+.....+|.|...|+
T Consensus 405 ~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 405 ALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 223332221 11223467899999999999999999999999999988 7789999999999999999999999999
Q ss_pred hccCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC
Q 011587 279 RMREKNVLTWTA---MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355 (482)
Q Consensus 279 ~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 355 (482)
.....|...||+ +...|.++++++.|+-.|++..+-+.. +.+....+...+-+.|+.++|+++++++.. --+-|
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn 556 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKN 556 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCC
Confidence 999877766655 567799999999999999999886543 667777888888999999999999999987 23445
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+..--..+..+...++.++|+..+++. .+.| +...+..+...|.+.|+.+.|..-|..+.+.+|
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 555556677788899999999999999 5566 556778888999999999999999999999999
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=5e-14 Score=127.24 Aligned_cols=211 Identities=15% Similarity=0.056 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC--CCCchhHHHHHHHHhcCCcccccchHHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVL 202 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~ 202 (482)
.+.|.+.++++.+.+ +-++..+..++.. ...+++++|.++++..- .++...+..++..+.. .++++++..+
T Consensus 60 ~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~~ 132 (280)
T PF13429_consen 60 YDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR-----LGDYDEAEEL 132 (280)
T ss_dssp ------------------------------------------------------------H-HHH-----TT-HHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHH-----HhHHHHHHHH
Confidence 666666666665543 2244445555555 45566666665555432 1344445555555555 5556666666
Q ss_pred HHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC
Q 011587 203 FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282 (482)
Q Consensus 203 ~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 282 (482)
++.... ....+++...|..+...+.+.|+.++|.+.++++++.. |.+..+...++..+...|+.+++.++++...+
T Consensus 133 l~~~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 133 LEKLEE-LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD---PDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 555431 22233445555555555566666666666666666555 44555555556666656655554444444332
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 283 ---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 283 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
.|...+..+..+|...|++++|...|++..... +.|......+..++...|+.++|.++..++.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 344445555555555556666666655555432 2245555555555555565555555555443
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7e-11 Score=101.03 Aligned_cols=286 Identities=12% Similarity=0.073 Sum_probs=201.5
Q ss_pred hHHHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC-CCCc--hhHHHHHHH
Q 011587 76 LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG-FMFN--VLVATTLIH 152 (482)
Q Consensus 76 ~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~ 152 (482)
..|.+++ +++++|.++|-+|.+.. |.+..+..++-+.|.+.| . .+.|..+++.+.++. ...+ ..+...|..
T Consensus 42 GlNfLLs-~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRG-E--vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 42 GLNFLLS-NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRG-E--VDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHHhh-cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcc-h--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3455555 89999999999999843 424445556666777666 7 999999999998762 1111 234566778
Q ss_pred HHHhCCChhHHHHHhccCCC-C--CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH----HHHHHHHH
Q 011587 153 FYASNKDISSGKKVFDQMPM-R--SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD----TTMVCVLS 225 (482)
Q Consensus 153 ~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~l~~ 225 (482)
-|...|-+|.|+++|..+.+ + -..+...|+..|-. ..+|++|+++-+++. ..+-++.. ..|.-+..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-----treW~KAId~A~~L~--k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-----TREWEKAIDVAERLV--KLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-----hhHHHHHHHHHHHHH--HcCCccchhHHHHHHHHHHH
Confidence 89999999999999999876 3 34567788999999 999999999998877 44444432 23445555
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH----HHHHHHHHHHHhcCCh
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV----LTWTAMATGMAIHGKG 301 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~ 301 (482)
.+....+.+.|...+.+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+|...|+.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 6666778888888888888887 56667667788888888888888888888887554 3566777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc---cCCHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR---AGHLEEAYNF 378 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 378 (482)
++....+.++.+....++. -..+-..-....-.+.|..++.+-.++ .|+...+..+|+.-.. -|...+.+.+
T Consensus 266 ~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 266 AEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 8888888888776433332 233333333334445555555554443 6888888888876543 3344555555
Q ss_pred HHcC
Q 011587 379 IMGI 382 (482)
Q Consensus 379 ~~~~ 382 (482)
++.|
T Consensus 341 lr~m 344 (389)
T COG2956 341 LRDM 344 (389)
T ss_pred HHHH
Confidence 5555
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=5.2e-11 Score=114.94 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=247.1
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC---CCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM---PMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
+++|.+++.++++.. +.+...|..|..+|-..|+.+++...+=-. ...|...|-.+.....+ .|++++|.-
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-----~~~i~qA~~ 228 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-----LGNINQARY 228 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-----cccHHHHHH
Confidence 999999999999985 557889999999999999999998876432 34477888888888888 999999999
Q ss_pred HHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH----HHHHHHcCCChHHHHHHH
Q 011587 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA----LVDMYSKCGCLDNALLIF 277 (482)
Q Consensus 202 ~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~----li~~~~~~g~~~~A~~~~ 277 (482)
.|.+.. . --+++...+---...|-+.|+...|..-|.++..... +.+..-+.. .++.+...++-+.|.+.+
T Consensus 229 cy~rAI--~-~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 229 CYSRAI--Q-ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHH--h-cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999986 2 2244555666677889999999999999999988763 444443433 456677788888888888
Q ss_pred HhccC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCCHHHHHH
Q 011587 278 SRMRE-----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG---------------------------VKPNAVTFTS 325 (482)
Q Consensus 278 ~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~~ 325 (482)
+.... -+...++.++..|.+...++.+......+.... ..++... ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 87764 245678899999999999999999988886621 1122222 13
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCC--cCHHHHHHHHHHHhccCCHHHHHHHHHcCCC-C--CCHHHHHHHHHHHHh
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVE--PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPI-K--PDAILWRSLLSACNV 400 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--p~~~~~~~l~~~~~~ 400 (482)
+.-++.+....+....+...+..+ .+. -+...|.-+.++|...|++.+|+.+|..+.. . -+...|-.+..+|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 344455666666666666666664 533 3466889999999999999999999999821 2 256789999999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.|.+++|.+.++.++...| .+...-.+|...+.+.|+.|+|.+.++.|.
T Consensus 462 l~e~e~A~e~y~kvl~~~p--------~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP--------DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC--------CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999 788899999999999999999999999887
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.4e-11 Score=108.40 Aligned_cols=351 Identities=10% Similarity=0.028 Sum_probs=243.4
Q ss_pred CCCccHHHHHHHHHHCCCCCCC-hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFD-DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 161 (482)
|++++|+++|.+.++.. | + +..|.....+|...| + |+++.+--...++. .|+ ..++..-.+++-..|+++
T Consensus 129 kkY~eAIkyY~~AI~l~--p-~epiFYsNraAcY~~lg-d--~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELC--P-DEPIFYSNRAACYESLG-D--WEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred ccHHHHHHHHHHHHhcC--C-CCchhhhhHHHHHHHHh-h--HHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 99999999999999854 6 6 666777777777888 8 99888877777665 444 345555666666777777
Q ss_pred HHHHHh------c-------------------------cCC--C----CCchhHHHHHHHHhcCCc------c--c----
Q 011587 162 SGKKVF------D-------------------------QMP--M----RSSATWNAMINGYCSQSK------K--A---- 192 (482)
Q Consensus 162 ~A~~~~------~-------------------------~~~--~----~~~~~~~~li~~~~~~~~------~--~---- 192 (482)
+|+.=. + .+. + |+....++....+..... . .
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l 280 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAAL 280 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhH
Confidence 665311 1 111 0 122112222211111000 0 0
Q ss_pred -----------ccchHHHHHHHHHhhh-ccCCCCcC---------HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCC
Q 011587 193 -----------KDCAFNALVLFRDMLV-DVSGVKPT---------DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE 251 (482)
Q Consensus 193 -----------~~~~~~a~~~~~~m~~-~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 251 (482)
...+..|...+.+-.. .......+ ..+.......+.-.|+.-.+..-|+..++.. +
T Consensus 281 ~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~---~ 357 (606)
T KOG0547|consen 281 AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD---P 357 (606)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC---c
Confidence 0112222222221110 00001111 2222222333455688889999999999887 4
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+...|--+..+|....+.++....|+.... .|..+|..-...+.-.+++++|..=|++.+..... +...|-.+..
T Consensus 358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~ 436 (606)
T KOG0547|consen 358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCC 436 (606)
T ss_pred ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHH
Confidence 4455577888899999999999999998874 46778888888888889999999999999887533 6677878888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-------HHH--HHHHHHHH
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-------AIL--WRSLLSAC 398 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~--~~~l~~~~ 398 (482)
+..+.+.+++++..|++.++ .++-.+..|+.....+...+++++|.+.|+.. .+.|+ +.. -..++. +
T Consensus 437 a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~ 513 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-L 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-h
Confidence 88899999999999999999 57778889999999999999999999999876 33333 221 122221 2
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.=.+++..|..+++++++.+| .....|..|.....+.|+.++|+++|++-.
T Consensus 514 qwk~d~~~a~~Ll~KA~e~Dp--------kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAIELDP--------KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred chhhhHHHHHHHHHHHHccCc--------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 224899999999999999999 678899999999999999999999998743
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.4e-12 Score=120.24 Aligned_cols=280 Identities=12% Similarity=-0.028 Sum_probs=219.4
Q ss_pred ChhHHHHHhccCCCC--C-chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHH
Q 011587 159 DISSGKKVFDQMPMR--S-SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEF 235 (482)
Q Consensus 159 ~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 235 (482)
+..+|...|..++.. | ......+.++|.. .+++++|.++|+..++.+.-..-+..+|.+.+-.+-+. .
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFE-----l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFE-----LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----V 404 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----H
Confidence 467888899886642 3 3455667789999 99999999999999832222333677888877665332 2
Q ss_pred HHHHH-HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 236 GACVH-GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 236 a~~~~-~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
+..++ +.+.+.. +..+.+|.++.+.|...++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..
T Consensus 405 ~Ls~Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22222 2333444 678899999999999999999999999999863 5578888888899999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHH
Q 011587 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAI 389 (482)
Q Consensus 312 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 389 (482)
...... +-..|.-+...|.+.++++.|+-.|+++.+ --+.+.+....+...+.+.|+.++|++++++. ...| |+.
T Consensus 482 l~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 482 LGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 654211 223445566789999999999999999987 34556777888888999999999999999998 4444 554
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.--..+..+...+++++|+..++++.+.-| .+...|..+...|.+.|+.+.|+.-|.-+.+...
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP--------~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVP--------QESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCc--------chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 444456667788999999999999999999 7899999999999999999999998888775444
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=4e-10 Score=109.01 Aligned_cols=417 Identities=13% Similarity=0.061 Sum_probs=293.2
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC---CChhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP---PNLFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~----~~~~~a~~ 91 (482)
|+.++|..|+.+..+.. +....-+..|...|-.. |+.+.+...+-.... .|...|-.+-.. |++++|.-
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqr---Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQR---GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHc---ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999998876 33445566788889988 999999887655432 233344433332 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHH----HHHHHHHhCCChhHHHHHh
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVAT----TLIHFYASNKDISSGKKVF 167 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~ 167 (482)
+|.+.++.. |.+...+--=...|-+.| + ...|..-+.++.....+.|..-.. ..+..+...++-+.|.+.+
T Consensus 229 cy~rAI~~~--p~n~~~~~ers~L~~~~G-~--~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 229 CYSRAIQAN--PSNWELIYERSSLYQKTG-D--LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHhcC--CcchHHHHHHHHHHHHhC-h--HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999865 546555555566777777 7 999999999999874322323232 3455677777778898888
Q ss_pred ccCCC-----CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC---------------------------CCc
Q 011587 168 DQMPM-----RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG---------------------------VKP 215 (482)
Q Consensus 168 ~~~~~-----~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~p 215 (482)
+.... -+...+|.++..+.+ ...++.+......+. ... +.+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~-----~~q~d~~~~~i~~~~--~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLK-----NKQSDKALMKIVDDR--NRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHH-----hHHHHHhhHHHHHHh--ccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 87653 256678889999999 888999998888876 311 122
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAM 291 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 291 (482)
+... ..++-++...+..+....+..........|..+...|.-+..+|...|++.+|+.+|..+.. .+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 23444556677777788888888888866677888999999999999999999999999875 367799999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH-------hcCCCcCHHHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS-------KWGVEPHIKHYSCIVD 364 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~ 364 (482)
..+|...|.++.|.+.|++..... +-+...-..|-..+.+.|+.++|.+++..+.. ..+..|..........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999999999998763 22344555677778899999999999988542 1245555555555556
Q ss_pred HHhccCCHHHHHHHHHcC--------------------------------------------------------------
Q 011587 365 LLGRAGHLEEAYNFIMGI-------------------------------------------------------------- 382 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-------------------------------------------------------------- 382 (482)
.+...|+.++=.+...+|
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 666666665532221111
Q ss_pred ----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc----hhHHHHHHHHHhCCCchHHHHH
Q 011587 383 ----PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS----EDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 383 ----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
++.-+ -..+..++.++++.+.+++|+.+...+.+...- .-+. ..-...+.+....+++..|...
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF------FQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh------hccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 00000 023345566778888888888888888775430 0122 2334556677788888888888
Q ss_pred HHHhHhc
Q 011587 453 RKQMKVK 459 (482)
Q Consensus 453 ~~~m~~~ 459 (482)
++.|...
T Consensus 689 lR~~i~~ 695 (895)
T KOG2076|consen 689 LRSVITQ 695 (895)
T ss_pred HHHHHHH
Confidence 8887654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-10 Score=102.55 Aligned_cols=252 Identities=11% Similarity=0.031 Sum_probs=179.6
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH-
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD- 271 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~- 271 (482)
..+.+++..-..... ..|.+-+...-+....+.-...++++|+.+|+.+.+...=--.|..+|..++-+--....+.
T Consensus 240 l~q~~e~~~k~e~l~--~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 240 LHQHEEALQKKERLS--SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHH--hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 445555555555554 44444444444444444555666666666666666654110113334444332221111111
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
.|..++ .+.+--+.|..++.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++.+.+ -
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i 393 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--I 393 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--c
Confidence 111111 111223345555666777788899999999999887543 556777788889999999999999999998 4
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
.+.|-..|-.|.++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|.++...+. .+
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--------te 465 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD--------TE 465 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------cc
Confidence 5678889999999999999999999999998 6777 888999999999999999999999999999888 68
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 430 SEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...+..|.+.|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999998887664
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=9.1e-10 Score=99.02 Aligned_cols=410 Identities=8% Similarity=0.041 Sum_probs=299.4
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC----CCChhhHHHHhcC---CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD----PPNLFLFNTLIRC---TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ll~~---~~~~~a~~ 91 (482)
++...|..|++....-. ..+...+-..+.+=.++ .....|+.+++... +-|..-|-.+.-- |+...|.+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emkn---k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKN---KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhh---hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 45567777777776544 33444444455555666 78888999988754 3333333332222 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
+|+...+ ..| +...|.+.++.=.+.. . ++.|..+++..+-- .|+..+|-.....=.++|.+..|..+|+...
T Consensus 163 iferW~~--w~P-~eqaW~sfI~fElRyk-e--ieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 163 IFERWME--WEP-DEQAWLSFIKFELRYK-E--IERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHc--CCC-cHHHHHHHHHHHHHhh-H--HHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999987 568 9999999999999988 8 99999999998854 6899999999999999999999999998765
Q ss_pred CC------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHH----
Q 011587 172 MR------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACV---- 239 (482)
Q Consensus 172 ~~------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~---- 239 (482)
+. +...++++..--.+ +..+++|--+|+-.. ..++-+ ...|......--+-|+....+..
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~-----qkE~ERar~iykyAl---d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEER-----QKEYERARFIYKYAL---DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 31 23344444444445 777888888888875 233333 34555555444455554444332
Q ss_pred ----HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH---HHHHHHH--------HHHHhcCChH
Q 011587 240 ----HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV---LTWTAMA--------TGMAIHGKGN 302 (482)
Q Consensus 240 ----~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li--------~~~~~~~~~~ 302 (482)
++.+++.+ +.|-.+|--.+..-...|+.+...++|++... |.. ..|.--| -.=....+.+
T Consensus 307 Rk~qYE~~v~~n---p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 307 RKFQYEKEVSKN---PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhHHHHHHHhC---CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455555 66778888888888899999999999999874 211 1222211 1123567899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAAC----CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (482)
.+.++++..++. ++-...||..+=-.| .++.++..|.+++.... |..|...+|...|..=.+.++++.+..+
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 999999998884 444566766554444 36789999999998876 6789999999999999999999999999
Q ss_pred HHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 379 IMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 379 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
+++. ...| +-.+|......-...|+.+.|..+|+-++.... +......+...|+.-...|.++.|..+++.+
T Consensus 460 YEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~------ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 460 YEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA------LDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc------cccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9988 5566 778999888888899999999999998887543 0122445667777778899999999999998
Q ss_pred HhcCC
Q 011587 457 KVKRV 461 (482)
Q Consensus 457 ~~~~~ 461 (482)
.+..-
T Consensus 534 L~rt~ 538 (677)
T KOG1915|consen 534 LDRTQ 538 (677)
T ss_pred HHhcc
Confidence 86543
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=3.1e-09 Score=99.33 Aligned_cols=258 Identities=14% Similarity=0.058 Sum_probs=205.6
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV 254 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 254 (482)
.+|+.-...|.+ .+.++-|..+|.... .+-| +...|......--..|..+....+++++...- +...
T Consensus 517 ~tw~~da~~~~k-----~~~~~carAVya~al----qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~---pkae 584 (913)
T KOG0495|consen 517 STWLDDAQSCEK-----RPAIECARAVYAHAL----QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC---PKAE 584 (913)
T ss_pred hHHhhhHHHHHh-----cchHHHHHHHHHHHH----hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC---Ccch
Confidence 455555566666 666777777777764 3344 45566666666667788888888888888776 5667
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
..|......+-..||+..|..++....+ .+...|-.-+..-..+.+++.|..+|.+.... .|+...|..-+...-
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 7777788888888999999999988864 35567888888889999999999999988764 567777766666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
-.++.++|.+++++..+ .++.-...|-.+.+.+-+.++++.|.+.|..- ..-| .+..|-.|...--+.|.+-+|..
T Consensus 663 ~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 67899999999999998 45555678888889999999999998888765 4445 56778878777788899999999
Q ss_pred HHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++++..-.+| .+...|...+.+-.+.|+.+.|..++.+..
T Consensus 741 ildrarlkNP--------k~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 741 ILDRARLKNP--------KNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHhcCC--------CcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 899999999999999999999998876655
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=5.9e-11 Score=112.92 Aligned_cols=282 Identities=10% Similarity=-0.003 Sum_probs=201.0
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhh-HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch--hHHHHHHHHHHhCCCh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFT-YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV--LVATTLIHFYASNKDI 160 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 160 (482)
|+++.|.+.+....+.. | ++.. +-....+..+.| + .+.|.+.+.+..+.. |+. .........+...|++
T Consensus 98 g~~~~A~~~l~~~~~~~--~-~~~~~~llaA~aa~~~g-~--~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA--A-EPVLNLIKAAEAAQQRG-D--EARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred CCHHHHHHHHHHHhhcC--C-CCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 99999999999887754 4 3332 333344555555 6 999999999998763 443 3444468888999999
Q ss_pred hHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh---hccCchH
Q 011587 161 SSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS---SQLGLLE 234 (482)
Q Consensus 161 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~---~~~~~~~ 234 (482)
+.|.+.++.+.+ | +...+..+...+.. .|++++|.+.+..+. +.++.+.......-..+. ...+..+
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~-----~~d~~~a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIR-----SGAWQALDDIIDNMA--KAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HhhHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999874 3 66788889999999 999999999999998 665443322211111111 2222222
Q ss_pred HHHHHHHHHHHhCCC-CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHH---HHHHHHHHHhcCChHHHHHHH
Q 011587 235 FGACVHGYMEKTFYM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLT---WTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~-p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~ 308 (482)
...+.+..+.+.... -+.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 233344444443210 024788899999999999999999999999875 44432 122222334457888999999
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 309 DSMRDCGVKPNA--VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 309 ~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
++..+.. +-|. ....++...+.+.|++++|.+.|+.... ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8887752 2233 5566888899999999999999996444 245789999999999999999999999999864
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=4.5e-10 Score=99.07 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=181.0
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC----CchhHHHHHHHHhcCCcccccchH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR----SSATWNAMINGYCSQSKKAKDCAF 197 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~~~~~ 197 (482)
.|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+.-++ +...+-+....... .|+..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-----~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-----RRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-----CCCch
Confidence 333555555555444443221 223333334444445555555555444322 22233333334444 44455
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCC-----CchhHHHHHHHHHHcCCChHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE-----NDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|..-+.... .. -+-++........+|.+.|++..+..+...+.+.+...+ ....+|+.+++-....+..+.
T Consensus 171 aA~~~v~~ll--~~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 171 AARENVDQLL--EM-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred hHHHHHHHHH--Hh-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 5554444443 11 112344445555555555555555555555555554211 123456666666666666666
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 273 ALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 273 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
-...++.... .++..-.+++.-+.+.|+.++|.++.++..+++..|+ . ...-.+.+.++...-++..+...+.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh
Confidence 6667777763 4667777788888999999999999999988877666 2 2333456778888888888888885
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++..| ..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.++.++....-.
T Consensus 324 h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 324 HPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred CCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 55555 68888999999999999999999977 7889999999999999999999999999999885444
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.2e-09 Score=96.40 Aligned_cols=282 Identities=10% Similarity=0.051 Sum_probs=218.6
Q ss_pred CCChhHHHHHhccCCCC---CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 157 NKDISSGKKVFDQMPMR---SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
.|+|..|++...+-.+. ....|-.-..+--. .|+.+.+-..+.+.- +..-.++...+-+........|+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~q-----rgd~~~an~yL~eaa--e~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQ-----RGDEDRANRYLAEAA--ELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHh-----cccHHHHHHHHHHHh--ccCCCchHHHHHHHHHHHHhCCCc
Confidence 69999999999876543 33344444555666 899999999999986 444456667777888888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-----------HHHHHHHHHHHHhcCChH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-----------VLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~ 302 (482)
+.|..-.+++.+.+ +..+.+......+|.+.|++.....++.++.+.. ..+|+.++.-....+..+
T Consensus 170 ~aA~~~v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 170 PAARENVDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred hhHHHHHHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999988 7788999999999999999999999999998631 246777777666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.-...|+..-.. .+-++..-.+++.-+...|+.++|.++..+..++ +..|+.. .+ -.+.+.++...-++..++.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHH
Confidence 666677766443 3445566677888899999999999999999995 7776622 22 2345666666655555544
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 383 --PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 383 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..+-++..+.+|...|.+.+.+.+|...|+..++..+ +..+|..+..++.+.|+.++|.++.++-...-
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 1122447788899999999999999999998888776 78999999999999999999999998876444
Q ss_pred Ccc
Q 011587 461 VET 463 (482)
Q Consensus 461 ~~~ 463 (482)
..|
T Consensus 392 ~~~ 394 (400)
T COG3071 392 RQP 394 (400)
T ss_pred cCC
Confidence 433
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.7e-10 Score=101.37 Aligned_cols=197 Identities=15% Similarity=0.067 Sum_probs=146.3
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 345666777777778888888887777653 2456677777778888888888888888776543 245566677777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...|++++|...+++..+....+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888763122234456667778888888888888888877 3334 456777788888888999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...++++.+..+ .+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYN--------QTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998888755 5677777888888888999999888877654
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=8.3e-10 Score=94.60 Aligned_cols=295 Identities=12% Similarity=0.073 Sum_probs=219.4
Q ss_pred hhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC-CCch------hHH
Q 011587 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSSA------TWN 179 (482)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~ 179 (482)
.+|..=++.+... + .++|..+|-+|.+.. +-+..+.-+|.+.|-+.|.+|.|+.+-+.+.+ ||.. +.-
T Consensus 37 r~Yv~GlNfLLs~--Q--~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~ 111 (389)
T COG2956 37 RDYVKGLNFLLSN--Q--PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQ 111 (389)
T ss_pred HHHHhHHHHHhhc--C--cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3455555554443 4 889999999999853 44566777899999999999999999998765 4332 233
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc----hh
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND----VF 255 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~ 255 (482)
.|..-|.. .|-+++|+.+|..+. +.+ .--......|+..|....+|++|..+-+++.+.+- .+. ..
T Consensus 112 qL~~Dym~-----aGl~DRAE~~f~~L~--de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAq 181 (389)
T COG2956 112 QLGRDYMA-----AGLLDRAEDIFNQLV--DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQ 181 (389)
T ss_pred HHHHHHHH-----hhhhhHHHHHHHHHh--cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHH
Confidence 45666777 999999999999987 433 23356788999999999999999999999998874 222 23
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
.|.-|...+....+.+.|..++.+..+. .+.+--.+...+...|++.+|.+.++...+.+..--..+...|..+|.+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 4556667777788999999999998753 3445556667889999999999999999998766667788899999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHHh---cCCHhHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI-MGIPIKPDAILWRSLLSACNV---HGDVALGE 408 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~ 408 (482)
.|+.++....+.++.+. . ++...-..+.+.-....-.+.|...+ +...-+|+...+..+|..-.. .|...+..
T Consensus 262 lg~~~~~~~fL~~~~~~-~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 262 LGKPAEGLNFLRRAMET-N--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred hCCHHHHHHHHHHHHHc-c--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhH
Confidence 99999999999999884 3 33333344444444444555665554 555778999999999987543 34456666
Q ss_pred HHHHHHHhcCC
Q 011587 409 KVGKILLQLQP 419 (482)
Q Consensus 409 ~~~~~~~~~~~ 419 (482)
..++.|+....
T Consensus 339 ~~lr~mvge~l 349 (389)
T COG2956 339 DLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHHHHH
Confidence 67777765433
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=4.6e-10 Score=110.99 Aligned_cols=267 Identities=10% Similarity=-0.000 Sum_probs=188.1
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhh---------ccCchHHHHHHHHHH
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSS---------QLGLLEFGACVHGYM 243 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~ 243 (482)
+...|...+.+.....+...+..++|+..|++.. ...|+ ...|..+..++. ..+++++|...++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al----~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV----NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 5566666666643211112456789999999987 44564 445555544433 234588999999999
Q ss_pred HHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 011587 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 244 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
.+.+ |.+...+..+...+...|++++|...|++..+ | +...+..+..++...|++++|...+++..+.... +.
T Consensus 331 l~ld---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 331 TELD---HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 9988 77888999999999999999999999999874 4 4667888999999999999999999999887543 22
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH-HHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI-LWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~ 398 (482)
..+..++..+...|++++|...++++.+. .-+-+...+..+..++...|+.++|...+.++ ...|+.. ..+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 23334444566689999999999998873 22224556777888899999999999999987 4455443 445555566
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...| +.|...++++.+.... .+....+ +...|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~------~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQR------IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhH------hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7666 4788878877664331 1222222 44555566666666655 7776554
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=2.9e-12 Score=81.44 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=8.6e-10 Score=96.82 Aligned_cols=199 Identities=17% Similarity=0.095 Sum_probs=164.8
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAM 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 291 (482)
.....+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 345677788899999999999999999998876 56778889999999999999999999998874 356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
...+...|++++|...+++.......| ....+..+..++...|++++|...+.+..+. .+.+...+..+...+...|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcC
Confidence 899999999999999999998753222 3456667788899999999999999999883 3445678888999999999
Q ss_pred CHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 371 HLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
++++|.+.+++. .. +.+...+..+...+...|+.+.|..+.+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999887 32 3356677777888889999999999988876653
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=2e-09 Score=101.82 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-----CCCCCCch-hHHHHHHHHHHcCCChHHHHHHHHhccC-------
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-----FYMPENDV-FIGTALVDMYSKCGCLDNALLIFSRMRE------- 282 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 282 (482)
-..++..+...|...|+++.|+..+++.++. |.. .+.. ...+.+...|...+++.+|..+|+++..
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3457777999999999999999999998775 210 1222 2344577899999999999999998863
Q ss_pred ---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 283 ---K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRD-----CGVK-PNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 283 ---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
| -..+++.|..+|.+.|++++|...+++..+ .|.. |.. ..++.+...|+..+++++|..+++...+...
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1 235788888899999999999888887642 1222 222 3456677788899999999999998776432
Q ss_pred --CCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 352 --VEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 352 --~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
..+ -..+++.|...|...|++++|.+++++. +..+ ....++.|...|.+.+++++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 222 2468999999999999999999999876 1222 24567888899999999999999999876
Q ss_pred hcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 416 QLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
...+..+ ++-+....+|..|+.+|.+.|+++.|.++.+...
T Consensus 437 ~i~~~~g-~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCG-PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhC-CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5332100 0111335688899999999999999999988775
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=5e-10 Score=107.96 Aligned_cols=263 Identities=14% Similarity=0.054 Sum_probs=177.5
Q ss_pred HHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC
Q 011587 91 LVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170 (482)
Q Consensus 91 ~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 170 (482)
.++..+...|+.| +..||.++|.-|+..| + .+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~P-nRvtyqsLiarYc~~g-d--ieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILP-NRVTYQSLIARYCTKG-D--IEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCC-chhhHHHHHHHHcccC-C--Ccccc-chhhhhcccccccchhHHHHHhcccccccccCCC------
Confidence 4667788999999 9999999999999999 8 99888 9999988888888899999999999999988776
Q ss_pred CCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhh--ccCCCCcCHHHHHHHHHHhhccC-c------hHHHHHHHH
Q 011587 171 PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV--DVSGVKPTDTTMVCVLSVSSQLG-L------LEFGACVHG 241 (482)
Q Consensus 171 ~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~p~~~~~~~l~~~~~~~~-~------~~~a~~~~~ 241 (482)
+|...+|..|..+|...|+.. .++.+.+.+..+.. ...|+---..-+-..+.++-..- + ..--+.++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli--~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLI--LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchH--HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 788999999999999943321 13333332222210 01222211111111112221110 0 001112223
Q ss_pred HHHHhCCCCCCchhH--HHHHHHHHHc-CCChHHHHHHHHhccC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 011587 242 YMEKTFYMPENDVFI--GTALVDMYSK-CGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK 317 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~--~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 317 (482)
+.++.+..-|..... +...++-... ...+++-........+ ++..+|.+++.+-...|+.+.|..++.+|++.|.+
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 333333100111100 0001222222 2234444444445544 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
.+..-|..|+-+ .++...++.++.-|... |+.|+..|+...+..+.+.|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 998888888876 78889999999999994 999999999998888887555
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1e-08 Score=92.80 Aligned_cols=219 Identities=9% Similarity=0.000 Sum_probs=176.0
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|+...|..-|+... .....+ ...|.-+...|....+.++..+.|..+.+.+ +.++.+|..-..++.-.+++++
T Consensus 339 ~g~~~~a~~d~~~~I--~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAI--KLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred cCCchhhhhhHHHHH--hcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHH
Confidence 678888888888877 333222 2237778888999999999999999999998 7788999999999999999999
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 273 ALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 273 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
|..=|++... .++..|-.+..+..+.+++++++..|++.++. ++-.+..|+.....+...+++++|.+.|+....-
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999875 35677777778888999999999999999887 4546788999999999999999999999998862
Q ss_pred ----cCCCcCH--HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 350 ----WGVEPHI--KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 350 ----~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+++-.+. ..-..++..-. .+++..|.+++++. .+.| ....|..|...-.+.|+.++|.++|++...+-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0111122 22223333223 38999999999988 6666 677899999999999999999999999887655
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.2e-08 Score=92.35 Aligned_cols=262 Identities=10% Similarity=-0.039 Sum_probs=178.8
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
++.....-..-+.. ..++.+..++.+... ...++....+..-|.++...|+..+-..+-.++++.. |..
T Consensus 243 ~~dll~~~ad~~y~-----~c~f~~c~kit~~ll---e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~ 311 (611)
T KOG1173|consen 243 NLDLLAEKADRLYY-----GCRFKECLKITEELL---EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSK 311 (611)
T ss_pred cHHHHHHHHHHHHH-----cChHHHHHHHhHHHH---hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCC
Confidence 33333444444555 677788888887764 2334444455555557777777777666666777666 667
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..+|-++.--|...|++.+|.+.|.+...- -...|-....+|+-.|..++|+..+...-+.= +-..-.+-.+.--|
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEY 390 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 777888888888888888888888776542 34677788888888888888888777665431 11112222344456
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCC-CCHHHHHHHHHHHHhc
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIK-PDAILWRSLLSACNVH 401 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~-p~~~~~~~l~~~~~~~ 401 (482)
.+.++.+.|.+.|.+... -.+-|+...+-+.-.....+.+.+|..+|+.. .-+ ....+++.|..+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 677888888888887776 34556666776666666677788887777654 111 1455677788888888
Q ss_pred CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.+++|...+++.+...+ .+..++.++.-.|...|+.+.|...|.+..
T Consensus 469 ~~~~eAI~~~q~aL~l~~--------k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSP--------KDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhHHHHHHHHHHHHHcCC--------CchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 888888888888888887 778888888888888888888887776644
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=3e-09 Score=105.20 Aligned_cols=226 Identities=13% Similarity=-0.015 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHhhc-----cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH---------cCCChHHHHHHHHhcc
Q 011587 216 TDTTMVCVLSVSSQ-----LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS---------KCGCLDNALLIFSRMR 281 (482)
Q Consensus 216 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~ 281 (482)
+...|...+.+-.. .+..++|...+++..+.. |.+...|..+..+|. ..+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 44555555555321 235678999999999887 566777777766554 2345899999999987
Q ss_pred C--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HH
Q 011587 282 E--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IK 357 (482)
Q Consensus 282 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 357 (482)
+ | +..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...+++..+. .|+ ..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~ 407 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAA 407 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChh
Confidence 5 3 677888888899999999999999999998753 25667888888999999999999999999884 333 23
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC--CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI--PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.+..++..+...|++++|...+++. ...| +...+..+..++...|+.++|...++++....+ .+.....
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~--------~~~~~~~ 479 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI--------TGLIAVN 479 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--------hhHHHHH
Confidence 3334444566789999999999887 2235 445567777888899999999999999877666 4555666
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHh
Q 011587 435 ALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
.+...|...| ++|...++.+.+
T Consensus 480 ~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 480 LLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccH--HHHHHHHHHHHH
Confidence 7777778887 488887777664
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.3e-11 Score=77.30 Aligned_cols=50 Identities=30% Similarity=0.509 Sum_probs=40.1
Q ss_pred CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc
Q 011587 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ 229 (482)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~ 229 (482)
||+.+||++|.+|++ .|++++|+++|++|. +.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~-----~~~~~~a~~l~~~M~--~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCK-----AGKFEEALKLFKEMK--KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHH-----CcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHcC
Confidence 577788888888888 888888888888887 77888888888888887764
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-07 Score=90.43 Aligned_cols=401 Identities=14% Similarity=0.028 Sum_probs=260.0
Q ss_pred HHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCC---ChhhHHHH---hcC-CCCccHHHHHHHHHHCCCC
Q 011587 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP---NLFLFNTL---IRC-TPPQDSVLVFAYWVSKGLL 102 (482)
Q Consensus 30 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l---l~~-~~~~~a~~~~~~m~~~~~~ 102 (482)
++.-..+..++.++..+.-+..++ |.++.+.+.|+....- ....|+.+ ..+ |....|+.+++.-....-.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333445778899999999999999 9999999999986521 11223222 222 8888899998887765544
Q ss_pred CCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhC-----------CChhHHHHHh
Q 011587 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR--GF--MFNVLVATTLIHFYASN-----------KDISSGKKVF 167 (482)
Q Consensus 103 p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~ 167 (482)
|++...+-..-+.|.+.-+. .+++..+-.+++.. +. ...+..|..+.-+|... ....++++.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~--~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKL--VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred CCcchHHHHHHHHHHhchhh--hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 64555555555666654424 77777777766662 11 12234455454444332 1234566666
Q ss_pred ccCCCC-----CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHH
Q 011587 168 DQMPMR-----SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242 (482)
Q Consensus 168 ~~~~~~-----~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (482)
++..+. ++..|-++ -|+. .++.+.|.+..++.. ..+-.-+...|..+.-.+...+++.+|+.+.+.
T Consensus 468 e~av~~d~~dp~~if~lal--q~A~-----~R~l~sAl~~~~eaL--~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLAL--QYAE-----QRQLTSALDYAREAL--ALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHhcCCCCchHHHHHHH--HHHH-----HHhHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 666432 22223222 3445 778888998888887 666667888888888888888999999988887
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C--------------------------C-HHHHHH
Q 011587 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K--------------------------N-VLTWTA 290 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~--------------------------~-~~~~~~ 290 (482)
....- +.+......-++.-..-++.+++......+.. + + ..++..
T Consensus 539 al~E~---~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 539 ALEEF---GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHh---hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 76543 22332222333333345566655554433321 0 0 111211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVK--PN------AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+.......+. .+..-. .|...-+. |+ ...+......+.+.++.++|...+.+..+ ..+-....|...
T Consensus 616 ls~l~a~~~~--~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 616 LSSLVASQLK--SAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred HHHHHHhhhh--hccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 1111110000 000000 01111112 22 12234555677788999999999998887 456667778877
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH--HHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK--VGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
...+...|.+++|.+.|... .+.| ++.+..++...+.+.|+...|.. ++..+.+.+| .+...|..+..
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--------~n~eaW~~LG~ 762 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--------LNHEAWYYLGE 762 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--------CCHHHHHHHHH
Confidence 78888999999999988877 6677 56788899999999999888888 9999999999 89999999999
Q ss_pred HHHhCCCchHHHHHHHHhHhcC
Q 011587 439 IYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.+.|+.++|.+.|.......
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999998876544
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.6e-07 Score=81.33 Aligned_cols=260 Identities=13% Similarity=0.032 Sum_probs=123.6
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEN 252 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 252 (482)
|+.....+...+.. .|+.++|+..|+..+ -+.|+.. ....-.-.+.+.|+.+....+...+.... ..
T Consensus 231 NvhLl~~lak~~~~-----~Gdn~~a~~~Fe~~~----~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ 298 (564)
T KOG1174|consen 231 NEHLMMALGKCLYY-----NGDYFQAEDIFSSTL----CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KY 298 (564)
T ss_pred cHHHHHHHhhhhhh-----hcCchHHHHHHHHHh----hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hc
Confidence 44555555555555 555555555555543 2223211 11111222344455555554444444333 22
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
+...|..-........++..|+.+-++..+ .++..|-.-...+...+++++|.-.|+..+... +-+...|.-|+.+
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 333333333344444555555555555543 233333333344555556666665565555432 1244556666666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHhc-cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHh
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV-DLLGR-AGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVA 405 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 405 (482)
|...|.+.+|.-+-+...+ -++.+..+.+.+. ..+.. ..--++|.++++.. .+.|+ ....+.+...+...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 6666666555555555544 2333444444332 22221 12234555555544 44453 234444445555555666
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+..++++.+...+ |....+.|...+...+.+++|+..|....
T Consensus 456 D~i~LLe~~L~~~~---------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFP---------DVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666665555443 45555555555555555555555554433
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.20 E-value=6.1e-10 Score=107.35 Aligned_cols=243 Identities=18% Similarity=0.119 Sum_probs=158.2
Q ss_pred HHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhc
Q 011587 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 201 ~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 280 (482)
.++-.+. ..|+.|+..||..++.-||..|+.+.|- +|..|.-... +.+..+|+.++.+....++.+.+.
T Consensus 11 nfla~~e--~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL--pv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHE--ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL--PVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHH--HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc--cccchhHHHHHhcccccccccCCC------
Confidence 4566676 7899999999999999999999999999 9999988887 779999999999999999988776
Q ss_pred cCCCHHHHHHHHHHHHhcCChHH---HHHHHHHH----HhCCCCCCHHHHHHHHHHH--------------hccCcHHHH
Q 011587 281 REKNVLTWTAMATGMAIHGKGNE---AIRLLDSM----RDCGVKPNAVTFTSLFAAC--------------CHAGLVEEG 339 (482)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~m----~~~g~~p~~~~~~~ll~~~--------------~~~~~~~~a 339 (482)
+|...+|..|..+|...|+... +.+.+... ...|+..-..-+-..+.++ ...|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999654 33322222 2233321111111111111 112333333
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
.+++..+.......|... +++-..... .+++-........-.|+..+|..++.+-.-.|+.+.|..++.+|.+.|
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 333322222100111111 233332222 233333333333225888888888888888888888888888888888
Q ss_pred CCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccE
Q 011587 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 469 (482)
.. .+.+-|..|+-+ .++...+..+++.|...|+.|+..+.-
T Consensus 235 fp-------ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 235 FP-------IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred CC-------cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 72 344445555544 777788888888888888888876653
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.3e-09 Score=93.53 Aligned_cols=230 Identities=15% Similarity=0.097 Sum_probs=197.3
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhH
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI 256 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 256 (482)
.-+.+.++|.+ .|.+.+|.+.++.-. .-.|-+.||..|-.+|.+..++..|..++.+-++.- |.++..
T Consensus 225 Wk~Q~gkCylr-----Lgm~r~AekqlqssL----~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---P~~VT~ 292 (478)
T KOG1129|consen 225 WKQQMGKCYLR-----LGMPRRAEKQLQSSL----TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---PFDVTY 292 (478)
T ss_pred HHHHHHHHHHH-----hcChhhhHHHHHHHh----hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---Cchhhh
Confidence 34678899999 999999999999876 346778899999999999999999999999988775 667777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
.......+-..++.++|.++|+...+ .++.+..++...|.-.++++-|+.+++++.+.|+. +...|+.+.-+|.-.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ya 371 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhh
Confidence 77888899999999999999999875 36667777778889999999999999999999987 888899899999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPH--IKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
+++|-+..-|.+.... --.|+ ...|-.+.......|++..|.+.|+-. .-.-+...+|.|.-.-.+.|+++.|..
T Consensus 372 qQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred cchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 9999999999998873 33344 457888888888999999999999877 323367789999888899999999999
Q ss_pred HHHHHHhcCCC
Q 011587 410 VGKILLQLQPE 420 (482)
Q Consensus 410 ~~~~~~~~~~~ 420 (482)
+++.+....|+
T Consensus 451 ll~~A~s~~P~ 461 (478)
T KOG1129|consen 451 LLNAAKSVMPD 461 (478)
T ss_pred HHHHhhhhCcc
Confidence 99999998884
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.2e-08 Score=91.30 Aligned_cols=268 Identities=10% Similarity=-0.029 Sum_probs=209.5
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC---CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC
Q 011587 140 FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR---SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216 (482)
Q Consensus 140 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 216 (482)
..-+......-.+-+...+++.+..++++.+.+. ....+-.-|.++.. .|+..+-..+=.++. ...+-.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~e-----l~~~n~Lf~lsh~LV---~~yP~~ 311 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYE-----LGKSNKLFLLSHKLV---DLYPSK 311 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHH-----hcccchHHHHHHHHH---HhCCCC
Confidence 3445666667777788899999999999988753 55566677778888 777777777777774 233446
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMAT 293 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 293 (482)
+.+|-++..-|...|+..+|.+.|.+....+ +.-...|-...+.|+-.|..+.|+..|....+ + .-..+--+.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD---~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLD---PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcC---ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 7799999999999999999999999988776 55667899999999999999999998877654 1 1122233444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---C--CCcCHHHHHHHHHHHhc
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---G--VEPHIKHYSCIVDLLGR 368 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~~li~~~~~ 368 (482)
-|.+.++...|.++|....... +-|+...+-+.-...+.+.+.+|..+|+.....- + ..-...+++.|.++|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 5788999999999999887652 3366677777766677899999999999887310 0 11134578999999999
Q ss_pred cCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 369 AGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+..++|+..+++. .. +.+..++.++.-.|...|+++.|.+.|.+.+...|
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999987 33 34888999999999999999999999999999988
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.9e-07 Score=82.82 Aligned_cols=401 Identities=13% Similarity=0.039 Sum_probs=235.8
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC---CChhhHHHHhcC---CCCccHHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP---PNLFLFNTLIRC---TPPQDSVLV 92 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~---~~~~~a~~~ 92 (482)
+++++|.+....+...+ +.+......=+-..... +.|++|+.+.+.-.. -+...|.-.--. +..++|+..
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~---~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQL---DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhh---hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 66788888888887776 44455555555556666 899999988776542 111112211111 889999988
Q ss_pred HHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
+. |..+.+..+...-...+.+.+ + +++|..+|+.+.+++.+- +...-..++..- ---.+ ++.+..+
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~-~--ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~-~~~q~v~ 168 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLE-R--YDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV-QLLQSVP 168 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHh-h--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH-HHHHhcc
Confidence 88 444435557777777888888 8 999999999998876432 122222222211 11111 1344444
Q ss_pred CCCchhHHHHHH---HHhcCCcccccchHHHHHHHHHhhh----c--c-----CCCCcCHHH-HHHHHHHhhccCchHHH
Q 011587 172 MRSSATWNAMIN---GYCSQSKKAKDCAFNALVLFRDMLV----D--V-----SGVKPTDTT-MVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 172 ~~~~~~~~~li~---~~~~~~~~~~~~~~~a~~~~~~m~~----~--~-----~~~~p~~~~-~~~l~~~~~~~~~~~~a 236 (482)
.....+|..+.+ .+.. .|++.+|+++++.... + . .++.-...+ -.-+.-.+...|+.++|
T Consensus 169 ~v~e~syel~yN~Ac~~i~-----~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIE-----NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred CCCcchHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 433445554443 3445 8999999999988720 0 0 011111111 22344566788999999
Q ss_pred HHHHHHHHHhCCCCCCchhH----HHHHHHHHHcCCChH-HHHHHHHhcc------------------------------
Q 011587 237 ACVHGYMEKTFYMPENDVFI----GTALVDMYSKCGCLD-NALLIFSRMR------------------------------ 281 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~~~------------------------------ 281 (482)
.+++...++... .|... -|.|+.+-....-.+ .++..++...
T Consensus 244 ~~iy~~~i~~~~---~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 244 SSIYVDIIKRNP---ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHhcC---CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998874 33322 222222211111111 1111111111
Q ss_pred --------------CC-CHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 282 --------------EK-NVLTWTAMATGM--AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 282 --------------~~-~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
.. ....+.+++... ++...+.++.+++...-+....-........+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 011223333222 2222466666766666554322224455566677788999999999999
Q ss_pred --------HhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 345 --------NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 345 --------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
.+.+ .+..|. +...++..+.+.++.+.|..++.+. .-.+ -..++..+...-.+.|+.++|
T Consensus 401 ~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 5555 355555 4455667777777666555555443 1122 223444444555678999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
..+++++.+..+ ++..+...++.+|++. +.+.|..+-+.+
T Consensus 478 ~s~leel~k~n~--------~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNP--------NDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCC--------chHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999 8999999999999988 567777765443
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.9e-09 Score=91.43 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=193.8
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHH-HHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTW-TAM 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l 291 (482)
.|.+=-+.+..+|.+.|.+..|++-++..++... -+.+|..|-.+|.+..+...|+.+|.+..+ |..+|| .-+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~----~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ 296 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP----HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ 296 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC----chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh
Confidence 3444446788999999999999999998887743 567788899999999999999999998875 544444 556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
...+-..++.++|.++++...+.. ..+.....++...|.-.++++.|..+++++.+ .|+. +...|+.+.-+|.-.++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcc
Confidence 677888899999999999998764 34667777778888889999999999999999 5875 78899999999999999
Q ss_pred HHHHHHHHHcC---CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 372 LEEAYNFIMGI---PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 372 ~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
+|-++.-|++. .-.| -...|-.+.......||+..|.+.|+-++..++ .+.+.++.|.-.-.+.|++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~--------~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA--------QHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc--------chHHHHHhHHHHHhhcCch
Confidence 99998888776 1123 345677788888899999999999999999999 7999999999999999999
Q ss_pred hHHHHHHHHhHhcC
Q 011587 447 PDVESVRKQMKVKR 460 (482)
Q Consensus 447 ~~a~~~~~~m~~~~ 460 (482)
++|..++....+..
T Consensus 446 ~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 446 LGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHHHHhhhhC
Confidence 99999999877543
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=9.4e-08 Score=86.64 Aligned_cols=224 Identities=11% Similarity=-0.042 Sum_probs=161.4
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.+..+.++..+.++.. .....|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++
T Consensus 39 ~~~~e~~i~~~~~~l~-~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 39 TLQQEVILARLNQILA-SRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred chHHHHHHHHHHHHHc-cccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCH
Confidence 4556677777777761 1223332 3567788888999999999999999999987 67889999999999999999
Q ss_pred HHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 271 DNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 271 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
++|...|++..+ | +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999975 4 56788888999999999999999999998864 433222222223445678999999997766
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHH--HHHHHHHcC-CC----CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHLE--EAYNFIMGI-PI----KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
. ...++...+ .+... ..|+.. ++.+.+.+. .. .| ....|..+...+.+.|++++|...|+++++.+|
T Consensus 193 ~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5 334433222 23333 344443 333333322 11 12 345788899999999999999999999999998
Q ss_pred CcccccccCCchhHHH
Q 011587 420 EVTFVDVACTSEDFVA 435 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~ 435 (482)
++..-+..
T Consensus 268 --------~~~~e~~~ 275 (296)
T PRK11189 268 --------YNFVEHRY 275 (296)
T ss_pred --------chHHHHHH
Confidence 66555543
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.1e-06 Score=82.82 Aligned_cols=423 Identities=9% Similarity=-0.062 Sum_probs=261.9
Q ss_pred hhhHHHHHHHhc-cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC---hhhHHHHhc
Q 011587 7 HRCFALLKLKAI-TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN---LFLFNTLIR 82 (482)
Q Consensus 7 ~~~~~~~l~~~~-~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~ 82 (482)
...|..+++..- +......+..+.+.+ +++....+....--.+..- |+.++|........+.| .++|..+--
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~l---g~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCL---GKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcc---cchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 344445555443 233333344444444 4444444444443344445 88899998888877544 345655422
Q ss_pred C----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 011587 83 C----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158 (482)
Q Consensus 83 ~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 158 (482)
. .++++|+..|......+ |.|...+.-+--.=++.| + ++.......++.+.. +-....|..+..++.-.|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmR-d--~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMR-D--YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHH-h--hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH
Confidence 2 88999999999998854 546666665554555566 6 777777777777652 334566788888888889
Q ss_pred ChhHHHHHhccCCC-----CCchhHHHHH------HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 159 DISSGKKVFDQMPM-----RSSATWNAMI------NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 159 ~~~~A~~~~~~~~~-----~~~~~~~~li------~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
+...|..+.++..+ ++...|.-.. ....+ .|.++.|++-+..-. ..+.-....-..-...+
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-----~g~~q~ale~L~~~e---~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-----AGSLQKALEHLLDNE---KQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHhhh---hHHHHHHHHhhhHHHHH
Confidence 99999888876542 3443333222 23344 777788887777653 22222233334556777
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH-HHHHhccCC--CHHHHHHHHHHHHh-cCChHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL-LIFSRMREK--NVLTWTAMATGMAI-HGKGNE 303 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~--~~~~~~~li~~~~~-~~~~~~ 303 (482)
.+.+++++|..++..++... |.+...|..+..++.+-.+.-++. .+|....+. ....-..+-..... ..-.+.
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 88999999999999998887 666666666777776333333443 666665531 10000000001111 122344
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCC------------CcCHHHH--HHHHHHHhc
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK-WGV------------EPHIKHY--SCIVDLLGR 368 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------------~~~~~~~--~~li~~~~~ 368 (482)
.-.++..+.+.|+++- +..+..-|-.....+-.+++.-.+... .|- +|+...| -.++..|-+
T Consensus 307 vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 5566777788887653 333333332222111111111111110 011 4555544 456778889
Q ss_pred cCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 369 AGHLEEAYNFIMGI-PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
.|+++.|+.+++.. +-.|+. ..|..-.+.+...|++++|..+++++.+.+. +|...-.--++-..++++.
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~--------aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT--------ADRAINSKCAKYMLRANEI 455 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--------hhHHHHHHHHHHHHHcccc
Confidence 99999999999987 556654 3555556778889999999999999999998 8887777888888999999
Q ss_pred hHHHHHHHHhHhcCC
Q 011587 447 PDVESVRKQMKVKRV 461 (482)
Q Consensus 447 ~~a~~~~~~m~~~~~ 461 (482)
++|.++...+.+.|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999999887775
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.4e-07 Score=81.52 Aligned_cols=299 Identities=10% Similarity=-0.025 Sum_probs=222.6
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHH---H
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-GFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN---A 180 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 180 (482)
+..+...-+.+++... .++...+.+.+-.+... -++-|......+..++...|+.++|+..|+....-|+.+.. .
T Consensus 193 ~~dwls~wika~Aq~~-~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMF-NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CccHHHHHHHHHHHHH-hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 5666666777777766 54455555555555443 34667888999999999999999999999987644333222 1
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
..-.+.+ .|+.++...+...+. .-.+-+...|..-.......+++..|..+-++.++.. +.+...+-.-
T Consensus 272 Ya~LL~~-----eg~~e~~~~L~~~Lf---~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilK 340 (564)
T KOG1174|consen 272 YAVLLGQ-----EGGCEQDSALMDYLF---AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILK 340 (564)
T ss_pred HHHHHHh-----ccCHhhHHHHHHHHH---hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhc
Confidence 2223345 777888887777764 1222344555555556667788889998888888877 6677777777
Q ss_pred HHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HH-HhccCc
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF-AA-CCHAGL 335 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~-~~~~~~ 335 (482)
...+...|+.++|.=.|+.... | +...|.-|+.+|...|++.+|..+-+..... .+.+..+...+. .. +-...-
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchh
Confidence 7888999999999999987763 3 7889999999999999999999887766554 334566665442 22 223344
Q ss_pred HHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKI 413 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 413 (482)
-++|.++++.-.+. .|+ ....+.+.+.+...|+.+.+..++++. ...||...-+.|...+.....+.+|...|..
T Consensus 420 rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57888888887763 444 456677788889999999999999988 6789999999999999999999999999999
Q ss_pred HHhcCC
Q 011587 414 LLQLQP 419 (482)
Q Consensus 414 ~~~~~~ 419 (482)
+++.+|
T Consensus 497 ALr~dP 502 (564)
T KOG1174|consen 497 ALRQDP 502 (564)
T ss_pred HHhcCc
Confidence 999999
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=2.4e-06 Score=80.40 Aligned_cols=386 Identities=13% Similarity=0.126 Sum_probs=217.7
Q ss_pred CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC----------hhhHHHHhcC-------CCCccHHHHHHHHHHCC
Q 011587 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN----------LFLFNTLIRC-------TPPQDSVLVFAYWVSKG 100 (482)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----------~~~~~~ll~~-------~~~~~a~~~~~~m~~~~ 100 (482)
.++...+-.+.+++.. +++++|.+.+......+ -..|+.+-.. +.--..-++++.+...-
T Consensus 167 ~~P~~~eeyie~L~~~---d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKS---DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred cCHHHHHHHHHHHHhc---cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 4444566677788888 89999888888876322 2233333222 22233344444444322
Q ss_pred CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC----------------C------
Q 011587 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN----------------K------ 158 (482)
Q Consensus 101 ~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------ 158 (482)
... =...|++|..-|.+.| . ++.|..++++.+.. ..+..-+..+.+.|+.- |
T Consensus 244 tDq-~g~Lw~SLAdYYIr~g-~--~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 244 TDQ-LGFLWCSLADYYIRSG-L--FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred cHH-HHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 111 2346888999999988 8 99999999988875 22333344444444331 1
Q ss_pred ChhHHHHHhccCCC---------------CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC------H
Q 011587 159 DISSGKKVFDQMPM---------------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT------D 217 (482)
Q Consensus 159 ~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~------~ 217 (482)
+++-...-|+.+.. .++..|..-+..+ .|+..+-..+|.+... .+.|- .
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~-------e~~~~~~i~tyteAv~---~vdP~ka~Gs~~ 387 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY-------EGNAAEQINTYTEAVK---TVDPKKAVGSPG 387 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh-------cCChHHHHHHHHHHHH---ccCcccCCCChh
Confidence 12222233333221 1333443333332 6677778888887752 33332 2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHhccC------------
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND---VFIGTALVDMYSKCGCLDNALLIFSRMRE------------ 282 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 282 (482)
..|..+.+.|-..|+++.|..+|++..+... +.- ..+|......-.+..+++.|+++.+....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 3577888889999999999999999988765 222 45677777777788899999999887652
Q ss_pred ---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHH-HH----------------------------
Q 011587 283 ---------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNAV-TF---------------------------- 323 (482)
Q Consensus 283 ---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~-~~---------------------------- 323 (482)
.+...|...+..--..|-++....+++++.+..+. |... .|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 13345666666666777888888888888776543 2111 11
Q ss_pred -----HHHHHHHh---ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh----ccCCHHHHHHHHHcC--CCCCC--
Q 011587 324 -----TSLFAACC---HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG----RAGHLEEAYNFIMGI--PIKPD-- 387 (482)
Q Consensus 324 -----~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~--~~~p~-- 387 (482)
+..+.-+. ....++.|..+|++..+ |++|...-+ +.-.|+ +.|-...|..++++. ++++.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKt--iyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKT--IYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 11111111 11245555555555555 444432211 111121 234455555555555 22321
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH---HHHHHHHhCCCchHHHHHHHHhH
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV---ALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
...||..|+-....=.+..-..+|+++++.-| +...-. -....-++.|..+.|..++.--.
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp---------~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLP---------DSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC---------hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 23455555444443344445556666665533 333322 34455567788888888876544
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=7.9e-08 Score=92.18 Aligned_cols=252 Identities=11% Similarity=0.002 Sum_probs=188.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC----
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---- 268 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g---- 268 (482)
.|++++|++.++.- ...+......+......+.+.|+.++|..++..+++.+ |.+..-|..+..+..-..
T Consensus 17 ~g~~~~AL~~L~~~---~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 17 AGDYEEALEHLEKN---EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred CCCHHHHHHHHHhh---hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccccc
Confidence 89999999999875 33444455566778899999999999999999999998 777777787777773332
Q ss_pred -ChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 269 -CLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKG-NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 269 -~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
+.+...++|+++.+ |...+...+.-.+.....+ ..+..++..+...|+++ +|+.|-..|.......-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 56777888888764 3222222232222222223 34566777788888763 55566666666666666666666
Q ss_pred HhHHhc-------------CCCcCHH--HHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHH
Q 011587 345 NMKSKW-------------GVEPHIK--HYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 345 ~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 407 (482)
...... .-+|+.. ++.-+...|-..|+.++|++++++. ...|+ +..|..-.+.+-+.|++++|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 655421 1134443 4456678888999999999999977 55675 66788888889999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+.++.+..++. .|...-+-.+..+.+.|++++|.+++..+.+.+.
T Consensus 248 a~~~~~Ar~LD~--------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 248 AEAMDEARELDL--------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhCCh--------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999 8999999999999999999999999999988776
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=7.2e-07 Score=85.71 Aligned_cols=283 Identities=10% Similarity=0.007 Sum_probs=174.1
Q ss_pred HHhcCCCCCChHHHHHHhhcCC--CCChhhHHHHhcC-----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhh----
Q 011587 49 YCTKKASPQSTKIVHFVFTHFD--PPNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCA---- 117 (482)
Q Consensus 49 ~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~---- 117 (482)
.+... |++++|++.++... -.|..++...... |+.++|..+|..+...+ | +...|...+..+.
T Consensus 13 il~e~---g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--P-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 13 ILEEA---GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--P-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHC---CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHhhhc
Confidence 34556 77888887776654 3444444332222 78888888888887765 5 4444444443333
Q ss_pred hccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH-HHHHhccCCCCC-chhHHHHHHHHhcCCcccccc
Q 011587 118 RFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS-GKKVFDQMPMRS-SATWNAMINGYCSQSKKAKDC 195 (482)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~~~ 195 (482)
... +...+...++++++.+.- |...+...+.-.+.....+.. +...+..+.... +.+++.+-..|.. ...
T Consensus 87 ~~~-~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d-----~~K 158 (517)
T PF12569_consen 87 QLS-DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD-----PEK 158 (517)
T ss_pred ccc-cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC-----hhH
Confidence 111 112566667777665542 222222222211222122222 222333333333 3455555555554 333
Q ss_pred hHHHHHHHHHhhhc--cC----------CCCcCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHH
Q 011587 196 AFNALVLFRDMLVD--VS----------GVKPTD--TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261 (482)
Q Consensus 196 ~~~a~~~~~~m~~~--~~----------~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 261 (482)
..-..+++...... .. .-.|+. +++..+...|...|++++|.+++++.+++. |..+..|..-.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---Pt~~ely~~Ka 235 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT---PTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCcHHHHHHHH
Confidence 44444444443310 11 123444 355667788889999999999999999987 66788899999
Q ss_pred HHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--------HHHHHHH
Q 011587 262 DMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF--------TSLFAAC 330 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--------~~ll~~~ 330 (482)
..|-+.|++.+|.+.++...+ .|-..-+..+..+.+.|++++|.+++......+..|....+ .....+|
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988875 45567777888899999999999999998777654432221 3445678
Q ss_pred hccCcHHHHHHHHHHhHH
Q 011587 331 CHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~ 348 (482)
.+.|++..|.+-|..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888998888877776665
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=3e-08 Score=93.91 Aligned_cols=235 Identities=17% Similarity=0.111 Sum_probs=175.7
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhc---cCC-CCcCHHH-HHHHHHHhhccCchHHHHHHHHHHHHh-----
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD---VSG-VKPTDTT-MVCVLSVSSQLGLLEFGACVHGYMEKT----- 246 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~---~~~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 246 (482)
+...+...|.. .|+++.|+.+++..... ..| ..|...+ .+.+...|...+++++|..+|+.++..
T Consensus 201 ~~~~La~~y~~-----~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 201 TLRNLAEMYAV-----QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 44447788888 89999999888876511 112 2344443 345778889999999999999998752
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC-
Q 011587 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----------KNV-LTWTAMATGMAIHGKGNEAIRLLDSMRDC- 314 (482)
Q Consensus 247 ~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 314 (482)
|-.-+.-..+++.|..+|.+.|++++|..++++..+ +.+ ..++.+...++..+++++|..++++..+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 321123345677788899999999999998887653 222 34666777889999999999999876431
Q ss_pred --CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----C--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 315 --GVKPN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW----G--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 315 --g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
-+.++ ..+++.+...|.+.|++++|+++++++.+.. | ..-....++.+...|.+.++..+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12222 4578999999999999999999999988752 1 1122457788899999999999998888766
Q ss_pred --------CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 383 --------PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 383 --------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.-.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22343 46899999999999999999999998874
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=3.8e-08 Score=89.23 Aligned_cols=223 Identities=12% Similarity=0.006 Sum_probs=156.5
Q ss_pred CchHHHHHHHHHHHHhC-CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHH
Q 011587 231 GLLEFGACVHGYMEKTF-YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~-~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
+..+.+..-+.+++... ..|+.....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566677777777543 22233456788889999999999999999998874 367899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CC
Q 011587 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PI 384 (482)
Q Consensus 307 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 384 (482)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.|++. ..
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999886432 4667778888889999999999999999884 343322222222344567899999999765 33
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.|+...+ . ......|+...+ ..++.+.+........ -......|..+...+.+.|++++|...|++....+..
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l-~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTEL-AERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 3333222 2 233345666554 3555554321100000 0034578999999999999999999999998876653
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=1.7e-08 Score=82.85 Aligned_cols=193 Identities=15% Similarity=0.055 Sum_probs=145.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
...-|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++....... +....|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4556777888888888888888888753 3457777888888888888888888888776433 56667777777788
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
.|.+++|...|++......+.--..+|..+.-+..+.|+++.|.+.|++. ...| ...+.-.+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888888875444444567888887888888888888888876 3334 445666677777788888888888
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++.....+. ++.......|+.-.+.|+.+.+.+.=.++.
T Consensus 196 ~~~~~~~~~--------~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGG--------AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhccc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888887777 788888888888888888777776655544
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.6e-06 Score=85.44 Aligned_cols=378 Identities=12% Similarity=0.078 Sum_probs=226.0
Q ss_pred CChhhHHHHHHHhccCcchHHHHHHHHHHhcCC--CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CCChhhHHHHh
Q 011587 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PPNLFLFNTLI 81 (482)
Q Consensus 5 p~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~ll 81 (482)
-|...|+.+|..- -..-+++.++....+++ .|+.-.+..+.++... +-+.+..++++++. +|++++-|.-+
T Consensus 950 ~D~~LW~~VL~e~---n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta---dLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEE---NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred cChHHHHHHHhcc---ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc---CCcHHHHHHHHHHhcCCcccccchhh
Confidence 3444555554322 13335666777777665 4566667788888888 88999999999876 55555433322
Q ss_pred cC--------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 011587 82 RC--------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF 153 (482)
Q Consensus 82 ~~--------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (482)
.. -+..+..++.+++...+. | + +...+...+ - +++|..+|++. ..+..+.+.|+.-
T Consensus 1024 QnLLiLtAikad~trVm~YI~rLdnyDa-~-~------ia~iai~~~-L--yEEAF~ifkkf-----~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1024 QNLLILTAIKADRTRVMEYINRLDNYDA-P-D------IAEIAIENQ-L--YEEAFAIFKKF-----DMNVSAIQVLIEN 1087 (1666)
T ss_pred hhhHHHHHhhcChHHHHHHHHHhccCCc-h-h------HHHHHhhhh-H--HHHHHHHHHHh-----cccHHHHHHHHHH
Confidence 22 666777777777766532 1 1 233344445 5 77888887754 3455566666653
Q ss_pred HHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 154 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
-+.++.|.++-++..+ +..|..+..+-.+ .+...+|++-|-+.. |+..|..+++.+.+.|.+
T Consensus 1088 ---i~~ldRA~efAe~~n~--p~vWsqlakAQL~-----~~~v~dAieSyikad--------Dps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1088 ---IGSLDRAYEFAERCNE--PAVWSQLAKAQLQ-----GGLVKDAIESYIKAD--------DPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred ---hhhHHHHHHHHHhhCC--hHHHHHHHHHHHh-----cCchHHHHHHHHhcC--------CcHHHHHHHHHHHhcCcH
Confidence 4677888887777664 4568888888888 888888888887653 677888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH--------------------------H
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL--------------------------T 287 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~ 287 (482)
++..+++..+++... ++... ..|+-+|++.+++.+.++++. -||.. -
T Consensus 1150 edLv~yL~MaRkk~~--E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVR--EPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHHHHHHHHHhhc--Cccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 998888888877766 33433 678888999888887776643 23333 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
|..|...+...|+++.|.+.-++. -+..||..+-.+|...+.+.-| +|.- .++-....-...++..|.
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHH
Confidence 444444444555555544433332 1344555555555544443322 1222 122334445556666666
Q ss_pred ccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 368 RAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
..|.+++...+++.. |+.. .-..|+-|.-.|++- ++++..+-++-... ....--+++++.++.-
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws-------------RvNipKviRA~eqahl 1356 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS-------------RVNIPKVIRAAEQAHL 1356 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH-------------hcchHHHHHHHHHHHH
Confidence 666666666666654 4433 333455555445443 33333333332221 1111246666666666
Q ss_pred chHHHHHHHH
Q 011587 446 WPDVESVRKQ 455 (482)
Q Consensus 446 ~~~a~~~~~~ 455 (482)
|.+..-++.+
T Consensus 1357 W~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1357 WSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHHHh
Confidence 6666555443
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=2.4e-05 Score=73.97 Aligned_cols=339 Identities=13% Similarity=0.119 Sum_probs=205.2
Q ss_pred hHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHC-CCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH
Q 011587 59 TKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSK-GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137 (482)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 137 (482)
++.+.....+|++--..-...++..|+.......|...+.. .++. ....|...+......+ - ++.+..++++.++
T Consensus 91 ~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~-l--Pets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHG-L--PETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCC-C--hHHHHHHHHHHHh
Confidence 44445555555432222233344448888888888887653 3333 5667888887777777 6 7788888888875
Q ss_pred hCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC----------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhh
Q 011587 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR----------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207 (482)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~ 207 (482)
. ++..-+-.+..+++.+++++|.+.+..+... +-..|.-+-....+... .+.--....+++.+.
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~--~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD--KVQSLNVDAIIRGGI 240 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc--hhcccCHHHHHHhhc
Confidence 4 4455778888889999999999888877632 34456665555555222 222223344455543
Q ss_pred hccCCCCcCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----------------CC-
Q 011587 208 VDVSGVKPTDT--TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----------------CG- 268 (482)
Q Consensus 208 ~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----------------~g- 268 (482)
+.-+|.. .|.+|.+-|.+.|.++.|..+|++....-. +..-|..+-++|+. .|
T Consensus 241 ----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 241 ----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM----TVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred ----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 4455543 677888888899999999888888776543 33334444444432 11
Q ss_pred -----ChHHHHHHHHhccC---------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------HHH
Q 011587 269 -----CLDNALLIFSRMRE---------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN------AVT 322 (482)
Q Consensus 269 -----~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~ 322 (482)
+++-....|+.+.. .++..|..-+.. ..|+..+....+.+.... +.|. ...
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTL 389 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhH
Confidence 22333334444332 133444443332 346677777777777654 3332 235
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHcCCCCC-------------
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH---IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP------------- 386 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p------------- 386 (482)
|..+.+-|-..|+++.|..+|++..+- .++-- ..+|....+.=.+..+++.|+++++.....|
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 667777888889999999999988873 43322 3455555555566778888888887762111
Q ss_pred -------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 387 -------DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 387 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...|..++...-..|-++....++++++++..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 223455555555556666666666666666544
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.4e-06 Score=74.75 Aligned_cols=369 Identities=10% Similarity=0.016 Sum_probs=175.7
Q ss_pred CChHHHHHHhhcCC---CCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD---PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~---~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|++++|..+++... .++...+-.+--+ |.+.+|..+-....+ ++--...++....+.+ + -++-.
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k------~pL~~RLlfhlahkln-d--Ek~~~ 141 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLN-D--EKRIL 141 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhC-c--HHHHH
Confidence 66777666666544 1222222211111 555555555333321 3333333444444444 4 44444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC--CchhHHHHH-HHHhcCCcccccchHHHHHHHHHh
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR--SSATWNAMI-NGYCSQSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li-~~~~~~~~~~~~~~~~a~~~~~~m 206 (482)
.+++.+.. +..-.-+|.....-.-.+.+|.+++.++... .-...|.-+ -+|.+ ..-++-+.++++-.
T Consensus 142 ~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-----lDYydvsqevl~vY 211 (557)
T KOG3785|consen 142 TFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-----LDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-----cchhhhHHHHHHHH
Confidence 44443332 1233334555544556678888888877643 333444433 34555 66666666666655
Q ss_pred hhccCCCCcCHHHHHHHHHHhhcc--CchHHHH------------HHHHHHHHhCC------------CCC---CchhHH
Q 011587 207 LVDVSGVKPTDTTMVCVLSVSSQL--GLLEFGA------------CVHGYMEKTFY------------MPE---NDVFIG 257 (482)
Q Consensus 207 ~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~------------~~~~~~~~~~~------------~p~---~~~~~~ 257 (482)
. ..++.+....+.......+. |+..+.+ ...+.+.++++ .|+ .-+..-
T Consensus 212 L---~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEAR 288 (557)
T KOG3785|consen 212 L---RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEAR 288 (557)
T ss_pred H---HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhh
Confidence 3 12333333444333333222 2211111 01112222211 110 011223
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG-------KGNEAIRLLDSMRDCGVKPNA-VTFTSLFAA 329 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 329 (482)
..|+-.|.+.+++++|..+.+++...++.-|-.-.-.++..| ...-|.+.|+-.-+.+..-|. .--.++.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 445666788899999999888876544333322222222222 244455555554444332221 112233344
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHH-HHHHHHhcCCHhH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRS-LLSACNVHGDVAL 406 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~-l~~~~~~~g~~~~ 406 (482)
+.-..+++++..+++.+.. +-..-|. .--.+..+++..|...+|+++|-.+ +-+ .|..+|.+ |.++|.+.+..+.
T Consensus 369 fFL~~qFddVl~YlnSi~s-YF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIES-YFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 4444566667766666666 2333233 3334566777777777777777666 211 24555544 3445666777766
Q ss_pred HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 407 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
|..++- +.+.. .........+++-|.+++.+--|-+.|+.+..
T Consensus 447 AW~~~l---k~~t~------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 447 AWDMML---KTNTP------SERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHH---hcCCc------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 655543 33320 01122233445566777777777777776663
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.98 E-value=3.6e-07 Score=75.18 Aligned_cols=196 Identities=13% Similarity=-0.002 Sum_probs=165.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
+..-+.-.|...|+...|..-+++.+++. +.+..+|..+...|-+.|+.+.|.+-|++..+ .+..+.|...-.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45567788999999999999999999998 77889999999999999999999999998874 4667888888889
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
|..|++++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+ -.+........+.....+.|+...
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988752211 245777788888899999999999999998 345556678888899999999999
Q ss_pred HHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 375 AYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 375 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|..+++.. +..++..+.-..|+.....||.+.+.+.=..+.+..|
T Consensus 192 Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 192 ARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99998877 4457888888888888899999988887777777766
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.95 E-value=1.7e-05 Score=76.54 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (482)
......+.+.+..++|...+.+. ++.| ....|......+...|..++|.+.|..+...+| .+.....++.
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP--------~hv~s~~Ala 725 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP--------DHVPSMTALA 725 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC--------CCcHHHHHHH
Confidence 34445556666666666666555 3334 455666666667788999999999999999999 7888999999
Q ss_pred HHHHhCCCchHHHH--HHHHhHhcCC
Q 011587 438 NIYASAERWPDVES--VRKQMKVKRV 461 (482)
Q Consensus 438 ~~~~~~g~~~~a~~--~~~~m~~~~~ 461 (482)
.++.+.|+-.-|.. ++.++.+.+.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 99999998777777 8888776554
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=8.2e-08 Score=89.06 Aligned_cols=219 Identities=17% Similarity=0.070 Sum_probs=178.3
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 302 (482)
-+.+.|++.+|.-.|+..++.. |.+...|.-|.......++-..|+..+++..+ .|..+.-.|.-+|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 3457788999999999999988 88999999999999999999999999998875 36778888888999999999
Q ss_pred HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 303 EAIRLLDSMRDCGVK--------PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
.|..+++.-+....+ ++...-.. ..+..........++|-++....+..+|......|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999988664321 00000000 22333344556677777777655656788889999999999999999
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 375 AYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 375 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
|.+.|+.. .++| |..+||-|...++...+.++|...|++++++.| .-.++..-|...|...|.|++|.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP--------~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP--------GYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC--------CeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999988 7778 778999999999999999999999999999999 6677778899999999999999987
Q ss_pred HHHhH
Q 011587 453 RKQMK 457 (482)
Q Consensus 453 ~~~m~ 457 (482)
|-...
T Consensus 521 lL~AL 525 (579)
T KOG1125|consen 521 LLEAL 525 (579)
T ss_pred HHHHH
Confidence 66544
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=9.4e-06 Score=76.34 Aligned_cols=304 Identities=10% Similarity=-0.072 Sum_probs=175.6
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC-CCch-hHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF-MFNV-LVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWN 179 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 179 (482)
....|..+...+...+ + .+.+.+.+....+... .++. .........+...|++++|.+++++..+ | +...+.
T Consensus 5 ~~~a~~~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 5 FALGHAAAALLLLLGG-E--RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred cHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3444555555555555 5 6665555555544321 2222 1222223345677888888888877653 3 333333
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
. ...+...+.. .+....+.+.+... ....+........+...+...|+++.|...+++..+.. +.+...+..
T Consensus 82 ~-~~~~~~~~~~-~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDF-SGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHA 153 (355)
T ss_pred H-hHHHHHhccc-ccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHH
Confidence 2 1122221111 44455555555542 22223334455566678888999999999999999887 667778888
Q ss_pred HHHHHHcCCChHHHHHHHHhccC-----CCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE-----KNV--LTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPNAVTF-T--SLFA 328 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~ 328 (482)
+..+|...|++++|..++++..+ ++. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 99999999999999999988764 122 3455778889999999999999999864432 1222211 1 2233
Q ss_pred HHhccCcHHHHHHH--HHHhHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CCC-----C---CHHHHHH
Q 011587 329 ACCHAGLVEEGLHL--FDNMKSKWGV--EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIK-----P---DAILWRS 393 (482)
Q Consensus 329 ~~~~~~~~~~a~~~--~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~-----p---~~~~~~~ 393 (482)
-+...|....+.++ +...... .. ............++...|+.++|..+++.+ ... . .....-.
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 33334433333322 1111110 11 111222234666778889999999998776 111 0 1111122
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
..-++...|+.++|.+.+.+++.....
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223356889999999999998876543
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.8e-07 Score=77.10 Aligned_cols=291 Identities=12% Similarity=0.023 Sum_probs=170.7
Q ss_pred CCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--CCch
Q 011587 99 KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSA 176 (482)
Q Consensus 99 ~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 176 (482)
.|+.. ...-+.+++..+.+.. + +..|.+++..-.+.. +.+....+.|..+|....++..|-+.++++.. |...
T Consensus 4 ~g~~i-~EGeftaviy~lI~d~-r--y~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 4 SGAQI-PEGEFTAVVYRLIRDA-R--YADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred ccccC-CCCchHHHHHHHHHHh-h--HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 34444 4445777777777776 6 888888888777663 33677778888888888888888888888764 3333
Q ss_pred hHHHH-HHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHH--hhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 177 TWNAM-INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSV--SSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 177 ~~~~l-i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
-|... ...+.+ .+.+..|+.+...|. +. |+...-..-+.+ ....+++..+..+.++.-..+ +
T Consensus 79 qYrlY~AQSLY~-----A~i~ADALrV~~~~~--D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~ 143 (459)
T KOG4340|consen 79 QYRLYQAQSLYK-----ACIYADALRVAFLLL--DN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----E 143 (459)
T ss_pred HHHHHHHHHHHH-----hcccHHHHHHHHHhc--CC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----c
Confidence 33321 234455 777888888888885 21 222211111111 235567777777776654332 4
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------------
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK------------ 317 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~------------ 317 (482)
..+.+.......+.|+++.|.+-|+...+ .....||.-+.- .+.|+++.|++...+++++|++
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 44555566666788888888888887765 344566655544 4557888888888888888764
Q ss_pred -CCHH--------HHHHHHHH-------HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc--CCHHHHHHHH
Q 011587 318 -PNAV--------TFTSLFAA-------CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA--GHLEEAYNFI 379 (482)
Q Consensus 318 -p~~~--------~~~~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~ 379 (482)
||+. .-+.++.+ +.+.++.+.|.+.+-.|.-+..-..|+.|...+.-.=... +.--+-++++
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHH
Confidence 1211 11222222 3355666666666666655434445555555443322221 1111112222
Q ss_pred HcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 380 MGIPIKP-DAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 380 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
-+. .| -..||..++-.|++..-++.|-+++.
T Consensus 303 L~~--nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 303 LQQ--NPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred Hhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 222 33 34566666667777666666666554
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=1.3e-07 Score=84.56 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=73.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cC
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AG 370 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 370 (482)
+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|.+- . +..+...+..++.. .+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~-eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI---D-EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---S-CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C-CcHHHHHHHHHHHHHHhCch
Confidence 44455666665555431 23444445555566666666666666665541 1 22233334433322 22
Q ss_pred CHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc-h
Q 011587 371 HLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW-P 447 (482)
Q Consensus 371 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~ 447 (482)
.+.+|..+|+++ ...++..+.+.+..+....|++++|++++.++.+.++ .++.+...++.+....|+. +
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~--------~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP--------NDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C--------CHHHHHHHHHHHHHHTT-TCH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHhCCChh
Confidence 455666666665 3334555556666566666666666666666655555 4555555555555555555 4
Q ss_pred HHHHHHHHhHh
Q 011587 448 DVESVRKQMKV 458 (482)
Q Consensus 448 ~a~~~~~~m~~ 458 (482)
.+.+.+.+++.
T Consensus 254 ~~~~~l~qL~~ 264 (290)
T PF04733_consen 254 AAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=3.5e-07 Score=92.93 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=116.7
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
|.....|-..|......+++++|.+++++... .-...|.++++.-..-|.-+...++|+++-+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 44555566666666666666666666666542 122355555555555555566666666665531 1 2234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC---CHHHHHHHHHHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP---DAILWRSLLSAC 398 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 398 (482)
|..|...|.+.+..++|.++++.|.++++ .....|..++..+.+.++-+.|.+++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 55666666666666666666666666444 44556666666666666666666666555 2222 233334444445
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.+.||.+++..+|+..+...| .....|+.+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP--------KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP--------KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc--------cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666666666666666 455666666666666666666666666666655544
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=5.3e-06 Score=77.98 Aligned_cols=305 Identities=13% Similarity=-0.001 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchh---HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMP---MRSSAT---WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 217 (482)
...|..+...+...|+.+.+.+.+.... .++... .......+.. .|++++|.+.+++.. .. .+.|.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-----~g~~~~A~~~~~~~l--~~-~P~~~ 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWI-----AGDLPKALALLEQLL--DD-YPRDL 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--HH-CCCcH
Confidence 4456666677777787777666665543 112221 1122233455 889999999999986 32 22344
Q ss_pred HHHHH---HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHH
Q 011587 218 TTMVC---VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAM 291 (482)
Q Consensus 218 ~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 291 (482)
..+.. ........+..+.+.+.+... .... +........+...+...|++++|...+++..+ .+...+..+
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLW--APEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhcc--CcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 34442 122222344555555555441 1111 33444555677789999999999999999875 356678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHH-H--HHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGV-KPNA--VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY-S--CIVDL 365 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~ 365 (482)
...+...|++++|...+++...... .|+. ..|..+...+...|+.++|..++++........+..... + .++.-
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 8999999999999999999877532 2332 345567888999999999999999986521111222211 1 22333
Q ss_pred HhccCCHHHHHHH--H-HcC--CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcc-cccccCCchhHHHHH
Q 011587 366 LGRAGHLEEAYNF--I-MGI--PIK--PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT-FVDVACTSEDFVALS 437 (482)
Q Consensus 366 ~~~~g~~~~A~~~--~-~~~--~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 437 (482)
+...|....+.++ + ... ... ...........++...|+.+.|..+++.+........ ...............
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 3334433322222 1 111 111 1112222456677889999999999999877443100 000011233444555
Q ss_pred HHHHhCCCchHHHHHHHHhHhc
Q 011587 438 NIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.++...|++++|.+.+......
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6677999999999998877643
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=8.8e-07 Score=79.23 Aligned_cols=221 Identities=12% Similarity=0.024 Sum_probs=129.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVC 222 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ 222 (482)
.....-+.+++...|+.+.+..-...-..|.......+...+.. .++-+.++.-+++.. .....+ +......
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~-----~~~~e~~l~~l~~~~--~~~~~~~~~~~~~~ 107 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSS-----PSDKESALEELKELL--ADQAGESNEIVQLL 107 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCT-----STTHHCHHHHHHHCC--CTS---CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhC-----ccchHHHHHHHHHHH--HhccccccHHHHHH
Confidence 33445566777778887776666655555666665555544433 344555666565544 333332 2222233
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-CHHHHHHHHHHHH----h
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGMA----I 297 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~ 297 (482)
....+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+- +..+...+..++. -
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 334556677888777766431 24556666777888888888888888887752 2223333333332 2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH-HHHH
Q 011587 298 HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL-EEAY 376 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~ 376 (482)
.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+... .-+-+..+...++....-.|+. +.+.
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 33578888888887654 456777777777788888888888888887765 2344555666666666666766 5666
Q ss_pred HHHHcC
Q 011587 377 NFIMGI 382 (482)
Q Consensus 377 ~~~~~~ 382 (482)
+++.++
T Consensus 257 ~~l~qL 262 (290)
T PF04733_consen 257 RYLSQL 262 (290)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 777776
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=7.6e-06 Score=71.70 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHH-HHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS-CIVDLL 366 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~ 366 (482)
-.++.+++.-..++++++-.++....-=..-|...|| +.++++..|++.+|+++|-.+... .++ |..+|. .|.++|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHH
Confidence 3444444444555666666666655542232333333 556666667777777666665541 222 334443 344566
Q ss_pred hccCCHHHHHHHHHcCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGIPIKPDAILWR-SLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++++++.|++++-++.-..+..+.- .+..-|.+.+.+--|-+.|+.+...+|
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 66677777776666664233333332 233346666666666666666666655
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=4.2e-05 Score=71.69 Aligned_cols=381 Identities=9% Similarity=0.003 Sum_probs=214.2
Q ss_pred HhcCCCCCChHHHHHHhhcCC--CCCh-h-hHHHH---hcCCCCccHHHHHHHHHHCCCCCCChhhHHH--HHHHhhhcc
Q 011587 50 CTKKASPQSTKIVHFVFTHFD--PPNL-F-LFNTL---IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVF--ALGSCARFC 120 (482)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~--~~~~-~-~~~~l---l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~--ll~~~~~~~ 120 (482)
..+...+|++++|.+....+. .||. . .+.-+ |..+++++|+.+.+.-.. . .+++. +=++||..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~----~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---L----LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---h----hhcchhhHHHHHHHHH
Confidence 333344499999988777665 2222 2 22222 333888888855443221 1 12222 467777766
Q ss_pred CcchhhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHH
Q 011587 121 SLSTLWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNA 199 (482)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a 199 (482)
.++.++|...++ |..+ +..+...-...+.+.|++++|.++|+.+.+.+...+...+.+-+. .- ..+
T Consensus 92 -lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~-----a~--~a~ 158 (652)
T KOG2376|consen 92 -LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL-----AV--AAA 158 (652)
T ss_pred -cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH-----HH--HHh
Confidence 666898888877 3333 334566666778899999999999999987766666665554333 10 011
Q ss_pred HHHHHHhhhccCCCCcCHHHHHHHHH---HhhccCchHHHHHHHHHHHHhCC-------CCCCch-----hHHHHHHHHH
Q 011587 200 LVLFRDMLVDVSGVKPTDTTMVCVLS---VSSQLGLLEFGACVHGYMEKTFY-------MPENDV-----FIGTALVDMY 264 (482)
Q Consensus 200 ~~~~~~m~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~p~~~~-----~~~~~li~~~ 264 (482)
..+ +.+. .....| ..+|..+.+ .+...|++.+|+++++...+.+. ..+.+. ..-.-|.-++
T Consensus 159 l~~-~~~q--~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQV-QLLQ--SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhH-HHHH--hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111 1232 333444 335554443 44678999999999999843221 000111 1123345567
Q ss_pred HcCCChHHHHHHHHhccCC---CHH----HHHHHHHHHHh----------------------------------------
Q 011587 265 SKCGCLDNALLIFSRMREK---NVL----TWTAMATGMAI---------------------------------------- 297 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---------------------------------------- 297 (482)
-..|+.++|.++|..+.+. |.. .-|.|+..-.-
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999887641 211 11111110000
Q ss_pred -----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhcc
Q 011587 298 -----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH--AGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRA 369 (482)
Q Consensus 298 -----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 369 (482)
.+.-+.+.++-... -+..|. ..+.+++..+.+ ...+..+..++....+ +.+-+ ..+.-.++......
T Consensus 315 lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhc
Confidence 00001111111000 011222 334444443332 2246777888777776 33333 44556667778899
Q ss_pred CCHHHHHHHHH--------cC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 370 GHLEEAYNFIM--------GI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 370 g~~~~A~~~~~--------~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
|+++.|.+++. .. .+.-.+.+...+...+.+.++.+.|..++.+++.--..-. .+-..-..++.-++..-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~-t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ-TGSIALLSLMREAAEFK 468 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc-ccchHHHhHHHHHhHHH
Confidence 99999999988 33 2233344555577778888888888888887765211000 00002233445555666
Q ss_pred HhCCCchHHHHHHHHhHhcC
Q 011587 441 ASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.|+.++|..+++++.+.+
T Consensus 469 lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC
Confidence 78899999999999998643
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=3.9e-05 Score=74.61 Aligned_cols=172 Identities=5% Similarity=-0.026 Sum_probs=104.8
Q ss_pred ChhhHHHHHHHhc----cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-----------
Q 011587 6 GHRCFALLKLKAI----TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD----------- 70 (482)
Q Consensus 6 ~~~~~~~~l~~~~----~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~----------- 70 (482)
|..|--.+|.... |+.+.|.+...... +-.++.-|..+|.+. .++|.|.-.+-.|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT---~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKT---RRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhh---ccccHHHHhhhhhhhhhhHHHHHHH
Confidence 5666677776655 78877765544433 345667777788777 77777776666654
Q ss_pred --CCChh-hHHHHhcC--CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 --PPNLF-LFNTLIRC--TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 --~~~~~-~~~~ll~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
.++.. .--+.+.. |..++|..+|.+-++.+ .+-+.|-..| . +++|.++-+.-.+..+ ..
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g-~--w~eA~eiAE~~DRiHL---r~ 859 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQG-M--WSEAFEIAETKDRIHL---RN 859 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcc-c--HHHHHHHHhhccceeh---hh
Confidence 22211 11122222 88999999998887632 2333444455 6 8888887654333222 34
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCC-----------------------CchhHHHHHHHHhcCCcccccchHHHHHH
Q 011587 146 VATTLIHFYASNKDISSGKKVFDQMPMR-----------------------SSATWNAMINGYCSQSKKAKDCAFNALVL 202 (482)
Q Consensus 146 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~~~~~~a~~~ 202 (482)
+|......+-..+|++.|++.|+....+ |...|.-....+-. .|+.+.|+.+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-----~GemdaAl~~ 934 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-----VGEMDAALSF 934 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-----ccchHHHHHH
Confidence 5666666667788888888888765321 33333333333334 7777788888
Q ss_pred HHHhh
Q 011587 203 FRDML 207 (482)
Q Consensus 203 ~~~m~ 207 (482)
|...+
T Consensus 935 Y~~A~ 939 (1416)
T KOG3617|consen 935 YSSAK 939 (1416)
T ss_pred HHHhh
Confidence 77765
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=4.2e-05 Score=72.46 Aligned_cols=387 Identities=13% Similarity=0.111 Sum_probs=240.3
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCC-CCChhhHHHH-hcC-CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhc
Q 011587 43 AQLIQLYCTKKASPQSTKIVHFVFTHFD-PPNLFLFNTL-IRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARF 119 (482)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l-l~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~ 119 (482)
+..++..|-..+-...+..+.+++...+ .++..+---+ +.. |+-++|.+....-.+.++. +...|..+ ..+.+.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~-gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVL-GLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHH-HHHHhh
Confidence 3445555544322233555555665544 3343332222 222 9999999998888775533 45555544 444444
Q ss_pred cCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccch
Q 011587 120 CSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCA 196 (482)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~ 196 (482)
.++ +++|.+.+....+.+ +-|...+.-+.-.-+..|+++.....-....+ .....|..+..++.- .|+.
T Consensus 88 dK~--Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-----~g~y 159 (700)
T KOG1156|consen 88 DKK--YDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-----LGEY 159 (700)
T ss_pred hhh--HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----HHHH
Confidence 437 999999999999875 55777777777777777888877776666553 255678888888888 8999
Q ss_pred HHHHHHHHHhhhccCC-CCcCHHHHHHHHH------HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 197 FNALVLFRDMLVDVSG-VKPTDTTMVCVLS------VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 197 ~~a~~~~~~m~~~~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
..|..+++... ... -.|+...+..... .....|..+.|.+.+..-...- ......-..-...+.+.++
T Consensus 160 ~~A~~il~ef~--~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i---~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 160 KMALEILEEFE--KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI---VDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHH--HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---HHHHHHhhhHHHHHHHHhh
Confidence 99999999987 333 3566666554433 2345677777776665544332 1233334556778899999
Q ss_pred hHHHHHHHHhccC--CCHHHHHHH-HHHHHhcCChHHHH-HHHHHHHhCC---CCCCHHHHHHHHHHHhccCcHHHHHHH
Q 011587 270 LDNALLIFSRMRE--KNVLTWTAM-ATGMAIHGKGNEAI-RLLDSMRDCG---VKPNAVTFTSLFAACCHAGLVEEGLHL 342 (482)
Q Consensus 270 ~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~ 342 (482)
+++|..+|..+.. ||...|... ..++.+..+..++. .+|....+.= ..|-.... .......-.+....+
T Consensus 235 lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdky 310 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKY 310 (700)
T ss_pred HHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHH
Confidence 9999999999986 555555444 44554333333444 6666655431 11211111 111222334455566
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH----HHHHHHcC-C------------CCCCHHHHH--HHHHHHHhcCC
Q 011587 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE----AYNFIMGI-P------------IKPDAILWR--SLLSACNVHGD 403 (482)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~-~------------~~p~~~~~~--~l~~~~~~~g~ 403 (482)
+..+.++ |+++-- ..+...|-.....+- +..+...+ + -+|....|. -++..+-+.|+
T Consensus 311 L~~~l~K-g~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 311 LRPLLSK-GVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHhhc-CCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 7777774 776533 333333332222211 12222222 1 246666554 45667889999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
++.|+..++.++..-| .-.+.|..=++.+...|..++|..++++..+.+.
T Consensus 387 ~~~A~~yId~AIdHTP--------TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTP--------TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999888 5567777788999999999999999998775543
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=5.5e-06 Score=70.82 Aligned_cols=316 Identities=9% Similarity=-0.068 Sum_probs=211.5
Q ss_pred HhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHH-HHHHHhCC
Q 011587 80 LIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTL-IHFYASNK 158 (482)
Q Consensus 80 ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g 158 (482)
+|.-.++++|++++..-.++. |.+......+-..|.... + +..|-..++++-.. .|...-|... ...+.+.+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q-~--f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQ-E--FALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 344489999999999888865 436677777777788877 8 99999999999876 4555444432 35667889
Q ss_pred ChhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHH
Q 011587 159 DISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 159 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
.+..|+.+...|... +...-..-+.+..+- ..+++..+..++++.. . .-+..+.+.......+.|+++.|.
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkY---se~Dl~g~rsLveQlp--~---en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKY---SEGDLPGSRSLVEQLP--S---ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---ccccCcchHHHHHhcc--C---CCccchhccchheeeccccHHHHH
Confidence 999999999998863 333222223333221 1677778888888764 2 234555556666667999999999
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------------CCH---------------
Q 011587 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------------KNV--------------- 285 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------~~~--------------- 285 (482)
+-|+...+.+- -.....|+.. -+..+.|+++.|+++..++.+ +|+
T Consensus 165 qkFqaAlqvsG--yqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 165 QKFQAALQVSG--YQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHhhcC--CCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999888653 2234555544 456677899999999888763 121
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+|.-...+.+.|+++.|.+.+-.|--+ ....|++|...+.-.= -.+++....+-+.-+... -+--..||..++-
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLl 318 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLL 318 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHH
Confidence 13444444567889999999988888422 2344667765544332 234555666666666663 2334679999999
Q ss_pred HHhccCCHHHHHHHHHcCC---CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGIP---IK-PDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~---~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.||+..-++.|.+++-+-. .+ .+...|+.|=..-...-..++|++-++.+..
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999998762 11 2555565443333345577788777766544
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00012 Score=72.84 Aligned_cols=357 Identities=10% Similarity=0.024 Sum_probs=231.0
Q ss_pred ChhhHHHHHHHhc--cCcchHHHHHHHHHHh--cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCCh-hhHHHH
Q 011587 6 GHRCFALLKLKAI--TTPSHIKQIHAQLITN--ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL-FLFNTL 80 (482)
Q Consensus 6 ~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~--g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l 80 (482)
|+...+..+++.- +-+.+.-++++...-. -+.-+....++|+-...+ -+.....+..+++..-|. ..-+..
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik----ad~trVm~YI~rLdnyDa~~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK----ADRTRVMEYINRLDNYDAPDIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh----cChHHHHHHHHHhccCCchhHHHHH
Confidence 5555666666653 3344555555555533 244555566777766665 466677777776653332 235566
Q ss_pred hcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 011587 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI 160 (482)
Q Consensus 81 l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 160 (482)
|..+-+++|..+|....- +......++.-.. + ++.|.+.-+++- .+.+|+.+..+-.+.|.+
T Consensus 1059 i~~~LyEEAF~ifkkf~~------n~~A~~VLie~i~----~--ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM------NVSAIQVLIENIG----S--LDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred hhhhHHHHHHHHHHHhcc------cHHHHHHHHHHhh----h--HHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 666888999999987654 5566666665433 4 667776655442 456899999999999999
Q ss_pred hHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHH
Q 011587 161 SSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVH 240 (482)
Q Consensus 161 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 240 (482)
.+|.+-|-+. .|+..|.-.+....+ .|.|++-++.+...+ +....|...+ .++-+|++.+++.+.++++
T Consensus 1121 ~dAieSyika--dDps~y~eVi~~a~~-----~~~~edLv~yL~MaR--kk~~E~~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA--DDPSNYLEVIDVASR-----TGKYEDLVKYLLMAR--KKVREPYIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHHHhc--CCcHHHHHHHHHHHh-----cCcHHHHHHHHHHHH--HhhcCccchH--HHHHHHHHhchHHHHHHHh
Confidence 9999888554 477888899999999 999999999888877 6666666553 5778888888887766654
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------------------------CCHHHHHHHHHHHH
Q 011587 241 GYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------------------------KNVLTWTAMATGMA 296 (482)
Q Consensus 241 ~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~ 296 (482)
. .|+......+.+-|...|.++.|.-+|..+.. .+..+|-.+-.+|.
T Consensus 1190 ~---------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1190 A---------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred c---------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 2 34666666667777777777777766665542 24556776666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHhccCCHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE-PHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 375 (482)
..+.+.-|. |--.++...+.-..-++..|...|-+++...+++... |++ ...-.|+.|.-.|.+- ++++.
T Consensus 1261 d~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-kp~km 1331 (1666)
T KOG0985|consen 1261 DKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-KPEKM 1331 (1666)
T ss_pred chhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-CHHHH
Confidence 655544332 2222334456667889999999999999998887764 333 3445777777777764 34444
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.+-++-.--+.+ .-.+++++-+..-+.+..-++....+
T Consensus 1332 ~EHl~LFwsRvN---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1332 MEHLKLFWSRVN---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333322200111 12367777776666666655554433
No 96
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=1.2e-05 Score=72.94 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=161.1
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCCh
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKG 301 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 301 (482)
.+...++.+.|.....++++.. +.+..+|+....++...| ++++++..++++.+ .+..+|+...-.+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 3445678888999999998887 677778888777777777 67999999998874 3556777665556666653
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc---CCH----
Q 011587 302 --NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA---GHL---- 372 (482)
Q Consensus 302 --~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~---- 372 (482)
+++..+++++.+...+ +..+|+....++.+.|+++++++.++++.+. . +-|...|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccH
Confidence 6788899898887644 7788888888888889999999999999984 3 44566776666555544 222
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc----CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC--
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVH----GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE-- 444 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 444 (482)
++++++..++ ...| |...|+-+...+... +...+|...+.++.+.++ .+......|++.|+...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~--------~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS--------NHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC--------CcHHHHHHHHHHHHhhhcc
Confidence 4566666444 4455 677888777777663 345678888998888777 78888999999998642
Q ss_pred ----------------CchHHHHHHHHhH
Q 011587 445 ----------------RWPDVESVRKQMK 457 (482)
Q Consensus 445 ----------------~~~~a~~~~~~m~ 457 (482)
..++|.++++.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2367888888884
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.1e-08 Score=57.05 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=28.7
Q ss_pred hCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 138 RGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
.|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.00011 Score=78.38 Aligned_cols=326 Identities=9% Similarity=-0.069 Sum_probs=202.4
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC------CCc--hhHHHHHHHHHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF------MFN--VLVATTLIHFYA 155 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 155 (482)
|++..+...+..+....... ++.........+...+ + ++++..++....+.-- .+. ......+...+.
T Consensus 388 g~~~~l~~~l~~lp~~~~~~-~~~l~~~~a~~~~~~g-~--~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 388 GELSLLEECLNALPWEVLLE-NPRLVLLQAWLAQSQH-R--YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred CChHHHHHHHHhCCHHHHhc-CcchHHHHHHHHHHCC-C--HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 66666666665553211111 2333333333344444 5 9999999888765311 111 122233345567
Q ss_pred hCCChhHHHHHhccCCC----CCc----hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCC-CcCHHHHHHHH
Q 011587 156 SNKDISSGKKVFDQMPM----RSS----ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGV-KPTDTTMVCVL 224 (482)
Q Consensus 156 ~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~-~p~~~~~~~l~ 224 (482)
..|++++|...+++... .+. ...+.+...+.. .|++++|...+++.... ..|. .+...++..+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-----~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-----KGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 88999999998877532 121 234555566677 89999999998887511 1111 11123455666
Q ss_pred HHhhccCchHHHHHHHHHHHHh----CCCC-CCchhHHHHHHHHHHcCCChHHHHHHHHhccC------C--CHHHHHHH
Q 011587 225 SVSSQLGLLEFGACVHGYMEKT----FYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------K--NVLTWTAM 291 (482)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l 291 (482)
..+...|+++.|...+++.... +... ......+..+...+...|++++|...+++... + ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788899999999998887653 2100 11223345566777888999999999887643 1 12344556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CCCCHH--H-H-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC---HHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCG--VKPNAV--T-F-TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH---IKHYSCI 362 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~--~-~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 362 (482)
...+...|++++|...++...... ...... . . ...+..+...|+.+.|...+...... ..... ...+..+
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHH
Confidence 667888999999999998875421 111110 1 0 11224445578999999998776542 11111 1123456
Q ss_pred HHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..++...|+.++|...+++. +..+ ...+...+..++...|+.++|...+.++.+...
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 77788999999998888766 3222 234566667778899999999999999999776
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.9e-08 Score=55.97 Aligned_cols=32 Identities=28% Similarity=0.648 Sum_probs=15.4
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1e-05 Score=82.84 Aligned_cols=229 Identities=15% Similarity=0.119 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHhccCC--CHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK--NVLTWTAM 291 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 291 (482)
....|-.-|......++.++|.++.++++..-..- +.-...|.++++.-..-|.-+...++|++..+- ...+|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44578888888999999999999999988643100 224567888888888888889999999999873 35689999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHhcc
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP--HIKHYSCIVDLLGRA 369 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 369 (482)
...|.+.+++++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++.+ -++- ......-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999875 334677899999999999999999999999998 3332 344555566667789
Q ss_pred CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 370 GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 370 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
|+.+.+..+|+.. ..+.-...|+.++..-.++|+.+.++.+|++++.++..++ .--..|...+..-.+.|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k-----kmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK-----KMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh-----HhHHHHHHHHHHHHhcCchh
Confidence 9999999999988 3334677899999999999999999999999999988421 22446667776666667755
Q ss_pred HHHHH
Q 011587 448 DVESV 452 (482)
Q Consensus 448 ~a~~~ 452 (482)
.++.+
T Consensus 1689 ~vE~V 1693 (1710)
T KOG1070|consen 1689 NVEYV 1693 (1710)
T ss_pred hHHHH
Confidence 44433
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.65 E-value=4.6e-05 Score=70.67 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=43.8
Q ss_pred CCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--CCchhHHH
Q 011587 103 TFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--RSSATWNA 180 (482)
Q Consensus 103 p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 180 (482)
|.|..+|+.++.-+.... .+++++.+++++.. ++.+...|...+..-.+..+++..+.+|.+... -+...|..
T Consensus 17 P~di~sw~~lire~qt~~----~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQP----IDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccCC----HHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 446666666666544332 66666666666643 233455666666666666666666666666542 24555555
Q ss_pred HHH
Q 011587 181 MIN 183 (482)
Q Consensus 181 li~ 183 (482)
-+.
T Consensus 92 Yl~ 94 (656)
T KOG1914|consen 92 YLS 94 (656)
T ss_pred HHH
Confidence 554
No 102
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=4.9e-05 Score=70.53 Aligned_cols=368 Identities=11% Similarity=0.026 Sum_probs=177.4
Q ss_pred CChHHHHHHhhcCC---CCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD---PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~---~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|+++.|...|..-. .+|.+.|+.-..+ |++++|++=-.+-++ +.|.=+..|+-.-.++...| + +++|.
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg-~--~~eA~ 90 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLG-D--YEEAI 90 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcc-c--HHHHH
Confidence 88888888887654 2334444333333 777777776666665 34534566777777766666 6 88888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC------C-CC------CchhHHHHHHHHhcCCc-----c
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM------P-MR------SSATWNAMINGYCSQSK-----K 191 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~-~~------~~~~~~~li~~~~~~~~-----~ 191 (482)
.-|.+-++.. +.|...++-+..++... . .+.+.|..- . .| ....|..++..+-+... .
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 8888877763 44566677777766111 0 112222110 0 01 12234444433322110 0
Q ss_pred cccchHHHHHHHHHhhhc---cC-------CCCc------------C----------HHHHHHHHHHhhccCchHHHHHH
Q 011587 192 AKDCAFNALVLFRDMLVD---VS-------GVKP------------T----------DTTMVCVLSVSSQLGLLEFGACV 239 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~~---~~-------~~~p------------~----------~~~~~~l~~~~~~~~~~~~a~~~ 239 (482)
...+...+..++...... .. +..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 011122222221111000 00 0111 0 11234556666666777777777
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH---HHHH-------HHHHHHHhcCChHHHHHHHH
Q 011587 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV---LTWT-------AMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 240 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-------~li~~~~~~~~~~~a~~~~~ 309 (482)
+....... .+..-++....+|...|.+..+...-+...+..- .-|+ .+..+|.+.++++.++..|.
T Consensus 247 y~~a~el~----~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 247 YAKALELA----TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHhHh----hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 77766654 1555566777778888887777776665544211 1222 23345566677778888777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI-KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP- 386 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 386 (482)
+....-..|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|...|.++ ...|
T Consensus 323 kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 7655433333221 11112222222211111 11111 01111133344455555555555544 2223
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
|...|..-.-+|.+.|.+..|.+-.+..++++| +....|.-=..++....+|++|.+.|.+-.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p--------~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDP--------NFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555 344444433444444444555555444433
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.65 E-value=0.00029 Score=65.63 Aligned_cols=401 Identities=11% Similarity=0.072 Sum_probs=207.3
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCC--C-ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhH
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDP--P-NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTY 109 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~ 109 (482)
+.|...++.|+.-+.. ..+++++..++.+.. | ....|...|.. .+++....+|.+.+..-. +...|
T Consensus 17 P~di~sw~~lire~qt----~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL---nlDLW 89 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT----QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL---NLDLW 89 (656)
T ss_pred CccHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh---hHhHH
Confidence 5677788888887776 478888888888762 3 33456666665 888888888888876532 55666
Q ss_pred HHHHHHhhhccCcchhhhHH----HHHHHHHH-hCCCC-chhHHHHHHHH---------HHhCCChhHHHHHhccCCC-C
Q 011587 110 VFALGSCARFCSLSTLWLGR----QIHVHVTK-RGFMF-NVLVATTLIHF---------YASNKDISSGKKVFDQMPM-R 173 (482)
Q Consensus 110 ~~ll~~~~~~~~~~~~~~a~----~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~ 173 (482)
..-|.-..+..+. ..... +-|+-... .|+.+ +-..|+..+.. |....+++...++++++.. |
T Consensus 90 ~lYl~YVR~~~~~--~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 90 KLYLSYVRETKGK--LFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHccC--cchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 6666554444312 33322 23333332 34333 23345555543 2333456667777777653 2
Q ss_pred ---------CchhHHHHHHHHhc---CCcccccchHHHHHHHHHhhhccCCCCcCHHH---------------HHHHHHH
Q 011587 174 ---------SSATWNAMINGYCS---QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT---------------MVCVLSV 226 (482)
Q Consensus 174 ---------~~~~~~~li~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~---------------~~~l~~~ 226 (482)
|-..|..=|+.... .+.. ...+..|.++++++..-..|...+..+ |-.+|.-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~-s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGER-SPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 11122211111110 0000 334555666666554211232211111 2222221
Q ss_pred hhccC------ch--HHHHHHHHHH-HHhCCCCCCchhHH-----HHHHHHHHcCCCh-------HHHHHHHHhccC---
Q 011587 227 SSQLG------LL--EFGACVHGYM-EKTFYMPENDVFIG-----TALVDMYSKCGCL-------DNALLIFSRMRE--- 282 (482)
Q Consensus 227 ~~~~~------~~--~~a~~~~~~~-~~~~~~p~~~~~~~-----~~li~~~~~~g~~-------~~A~~~~~~~~~--- 282 (482)
--..+ .. ..+.-++++. .-.+. .++.... ...-+.+...|+. +++..++++..+
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~--~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGY--HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 11111 00 0111112221 12222 1121110 1111233333433 344445544432
Q ss_pred -CCHHHHHHHHHHHH---hcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-CH
Q 011587 283 -KNVLTWTAMATGMA---IHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-HI 356 (482)
Q Consensus 283 -~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 356 (482)
.+..+|..+...-- ..++.+....+++++... .+.|+ .+|..++..-.+..-+..|..+|.++.+. +..+ .+
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhV 402 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchh
Confidence 23333333332111 112355666666666543 23333 45666777777777778888888888875 5555 66
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
..+++++..||. ++.+-|.++|+-- ..-+|. .--...+.-+...++-..+..+|++.+....+. ......|.
T Consensus 403 fVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~-----~ks~~Iw~ 476 (656)
T KOG1914|consen 403 FVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA-----DKSKEIWD 476 (656)
T ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh-----hhhHHHHH
Confidence 777777776665 5677778887643 222333 333556666677777777888888877763311 13456788
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH
Q 011587 435 ALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.++..-..-|+...+.++-+++.
T Consensus 477 r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 88887778888877777766554
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.64 E-value=3.8e-05 Score=73.71 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=100.2
Q ss_pred HHHHcCCChHHHHHHHHhccCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 011587 262 DMYSKCGCLDNALLIFSRMREKNV--LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 339 (482)
.+......+.+|+.+++.+...++ .-|..+..-|+..|+++.|.++|-+.- .++-.|..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 334445556666666666554332 235556666777777777776665431 233456666777777777
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++-.+.. |-+.....|-+-..-+-+.|++.+|.+++-.++ .|+. .|..|-+.|..+...++.++- .+
T Consensus 811 ~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~---h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKH---HG 878 (1636)
T ss_pred HHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHh---Ch
Confidence 66654443 334445555555555666777777777766665 4443 345566677766666665532 22
Q ss_pred CcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 420 EVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+ --..|...+..-|...|+...|..-|-+..
T Consensus 879 d-------~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 879 D-------HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred h-------hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 1 224566777888888888888887665543
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=7.2e-05 Score=65.48 Aligned_cols=293 Identities=14% Similarity=0.087 Sum_probs=177.0
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHH---HHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHH-HH
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMIN---GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM-VC 222 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~-~~ 222 (482)
.--+...+...|++..|+.-|....+-|+..|.++.+ .|.. .|+...|+.=+.+.. ..+||-..- ..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLA-----mGksk~al~Dl~rVl----elKpDF~~ARiQ 111 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLA-----MGKSKAALQDLSRVL----ELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-----hcCCccchhhHHHHH----hcCccHHHHHHH
Confidence 3445555666677777777776666666666655543 3444 555555555555554 345553321 12
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCch------------hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHH
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDV------------FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLT 287 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------------~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 287 (482)
-...+.+.|.++.|+.=|+.++++........ ......+..+...||...|+.....+.+ .|...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 23445667777777777777766542100111 1112234455667788888887777764 36777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHH----HHHH-
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH----YSCI- 362 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l- 362 (482)
|..-..+|...|++..|+.=++...+.. .-+..++..+-..+...|+.+.++...++..+ +.|+... |..|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHH
Confidence 7777788888888888877776665543 23455555566666777777777777776665 3454322 1111
Q ss_pred --------HHHHhccCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC
Q 011587 363 --------VDLLGRAGHLEEAYNFIMGI-PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC 428 (482)
Q Consensus 363 --------i~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 428 (482)
+......++|.++++-.+.. ...|. ...+..+-.++...|++.+|++...+++...| .
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~--------~ 339 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP--------D 339 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc--------h
Confidence 12233455666666555544 33443 22344455666777888888888888888887 6
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 429 TSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
|..++.--..+|.-...|++|+.=++...+.+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 77788878888888888888887777666443
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=7.5e-06 Score=69.10 Aligned_cols=148 Identities=13% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 340 (482)
+-.|...|+++.+....+.+..+.. .+...++.+++...++...+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4456677776666554433322210 1112455566666666655543 335666666666677777777777
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHH-hccCC--HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLL-GRAGH--LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
..|++..+ -.+-+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...|++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776666 2233555666666543 45555 36677777666 3344 55566666666667777777777777777
Q ss_pred hcCC
Q 011587 416 QLQP 419 (482)
Q Consensus 416 ~~~~ 419 (482)
+..+
T Consensus 172 ~l~~ 175 (198)
T PRK10370 172 DLNS 175 (198)
T ss_pred hhCC
Confidence 7666
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=3.4e-05 Score=78.14 Aligned_cols=242 Identities=7% Similarity=-0.040 Sum_probs=160.4
Q ss_pred CCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhccCCCCCchh
Q 011587 99 KGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMRSSAT 177 (482)
Q Consensus 99 ~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 177 (482)
....|.+...+..|+..+...+ + +++|.++.+...+. .|+ ...|-.+...+...++...+..+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~-~--~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------- 87 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSEN-L--TDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------- 87 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------
Confidence 3455667788888888887777 7 99999998877765 343 44444444566677775554433
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 257 (482)
.++..... ..++.-+..++..|. . ..-+...+..+..+|.+.|+.+++..+++++++.. +.+..+.
T Consensus 88 --~~l~~~~~-----~~~~~~ve~~~~~i~--~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aL 153 (906)
T PRK14720 88 --NLIDSFSQ-----NLKWAIVEHICDKIL--L--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIV 153 (906)
T ss_pred --hhhhhccc-----ccchhHHHHHHHHHH--h--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHH
Confidence 34444444 555655555555554 2 33355588888999999999999999999999988 6788889
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 337 (482)
|.+...|... ++++|..++.+.... |...+++.++.++|.++....+. +...|.
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~-----------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~------------- 207 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR-----------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL------------- 207 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH-----------HHhhhcchHHHHHHHHHHhcCcc-cchHHH-------------
Confidence 9999999998 999999887765443 56667888888888888776321 222222
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
++.+.+....|..--..++--+...|...++++++..+++.+ ...| |.....-++.+|.
T Consensus 208 ---~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 208 ---RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ---HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222333332222333445556666777777777777777776 3344 5555666666654
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.0001 Score=78.53 Aligned_cols=305 Identities=11% Similarity=0.031 Sum_probs=191.9
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCC----CCC---c---h--hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCC
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMP----MRS---S---A--TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVK 214 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~---~---~--~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 214 (482)
.......+...|++++|..++.... ..+ . . ....+...+.. .|++++|...++... ..-..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al--~~~~~ 484 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN-----DGDPEEAERLAELAL--AELPL 484 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHH--hcCCC
Confidence 3444555667889999888876542 111 1 1 11122233445 889999999998875 32111
Q ss_pred cCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----
Q 011587 215 PTD----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----- 282 (482)
Q Consensus 215 p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 282 (482)
.+. ...+.+...+...|+++.|...+.+....... +.........+...+...|++++|...+++...
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 121 24455666678899999999998887753210 011223456667788899999999999887653
Q ss_pred --C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 283 --K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC--GVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 283 --~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
+ ....+..+...+...|++++|...+++.... ...+ ....+..+...+...|+.+.|...+.........
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 1 1223445556677789999999999887542 1112 2334444566777899999999999888652111
Q ss_pred CcCHHHH-----HHHHHHHhccCCHHHHHHHHHcCCC-C-CCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCc
Q 011587 353 EPHIKHY-----SCIVDLLGRAGHLEEAYNFIMGIPI-K-PDA----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421 (482)
Q Consensus 353 ~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 421 (482)
......+ ...+..+...|+.+.|.+++..... . ... ..+..+..++...|+.++|...++++.......
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~ 724 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL 724 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1111111 1122445568899999999877621 1 111 123456667888999999999999988753211
Q ss_pred ccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+. ......+...+..++.+.|+.++|...+.+..+..
T Consensus 725 g~--~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 725 RL--MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred Cc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 00 00123466778889999999999999988877543
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=5.7e-06 Score=72.69 Aligned_cols=188 Identities=10% Similarity=-0.043 Sum_probs=129.4
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN-V---LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA--VT 322 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~ 322 (482)
+.....+..+...+...|++++|...|+++.+ |+ . .++..+..++.+.|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44667778888889999999999999988864 32 1 46677888899999999999999999876432111 13
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 323 FTSLFAACCHA--------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 323 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
+..+..++.+. |+.++|.+.++.+.+. .+-+...+..+..... ...... .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 44445555543 6788888888888874 2222223322221111 111000 011245
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...+.+.|++++|...++++++..|+. ......+..+..++.+.|++++|...++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDT-----PATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCC-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 567889999999999999999987621 1245788899999999999999999999887543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=1.4e-05 Score=67.39 Aligned_cols=151 Identities=8% Similarity=-0.022 Sum_probs=114.9
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGK 300 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 300 (482)
+-.|...|+++.+....+.+ .. +.. .+...++.+++...+++..+ .|...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~----~~-~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRL----AD-PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHH----hC-ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Confidence 45678899988875443211 10 111 23346778888888887764 478899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCc--HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGL--VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 377 (482)
+++|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+ .-+-+...+..+...+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999987533 677777777764 66677 5999999999998 345577888999999999999999999
Q ss_pred HHHcC--CCCCCHHHH
Q 011587 378 FIMGI--PIKPDAILW 391 (482)
Q Consensus 378 ~~~~~--~~~p~~~~~ 391 (482)
.|+++ ...|+..-+
T Consensus 166 ~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHhhCCCCccHH
Confidence 99998 444555444
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.9e-05 Score=66.66 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=93.0
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
|..+ ..+-..+...|+-+....+...... .|.......+....+.|++..|+..|++..... ++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 4444 4555566666666666665555332 233444556666666677777777776665543 4466666666666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a 407 (482)
|.+.|+++.|..-|.+..+ -..-+...++.+.-.|.-.|+.+.|..++... .-.-|...-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 7777777777766666666 22334445566666666666777776666655 1112555556666666666776666
Q ss_pred HHHHH
Q 011587 408 EKVGK 412 (482)
Q Consensus 408 ~~~~~ 412 (482)
+++..
T Consensus 222 ~~i~~ 226 (257)
T COG5010 222 EDIAV 226 (257)
T ss_pred Hhhcc
Confidence 66554
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.001 Score=65.86 Aligned_cols=384 Identities=13% Similarity=0.136 Sum_probs=205.4
Q ss_pred CChHHHHHHhhcCC--CCChhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhH
Q 011587 57 QSTKIVHFVFTHFD--PPNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLG 128 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a 128 (482)
+++..|.+..+... .||.. |...+++ |+.++|..+++.....+.. |..|...+-..|...+ . .++|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~-~--~d~~ 96 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLG-K--LDEA 96 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHh-h--hhHH
Confidence 56667766666654 34432 3333333 8888888777777665433 7777777777777777 7 8888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh----HHHHHhccCCCCCchhHHHHHHHHhcCCc-ccccch----HHH
Q 011587 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS----SGKKVFDQMPMRSSATWNAMINGYCSQSK-KAKDCA----FNA 199 (482)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~----~~a 199 (482)
..+|++.... .|+......+..+|.+.+++. .|.++++..++.--..|+. ++....+-. .+.+.. .-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHH
Confidence 8888888765 456666667777777776654 3667777665544444443 333333211 111111 234
Q ss_pred HHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHh
Q 011587 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 200 ~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
.+.++.+.. +.|---+..-...-...+...|++++|..++.--...... +.+...-+.-+..+...+++.+..++-.+
T Consensus 174 ~~m~~~~l~-~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 174 EKMVQKLLE-KKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-SANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHhc-cCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 445555541 1221112222222233445566777777777332222221 44555556667777777888777777766
Q ss_pred ccCCCHHHHHHHHHHHHh----------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---ccCcHHHHH
Q 011587 280 MREKNVLTWTAMATGMAI----------------HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC---HAGLVEEGL 340 (482)
Q Consensus 280 ~~~~~~~~~~~li~~~~~----------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a~ 340 (482)
+...+..-|...+..+.+ .+..+...+..++..... ....|-+-+.++. .-|+.+++.
T Consensus 252 Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 252 LLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHH
Confidence 654211113332222111 111222222222222211 1122333333332 346666654
Q ss_pred HHHHHhHHhcCCCc-------------CHHHHHHHHHHHhccCCHH-----------------------------HHHHH
Q 011587 341 HLFDNMKSKWGVEP-------------HIKHYSCIVDLLGRAGHLE-----------------------------EAYNF 378 (482)
Q Consensus 341 ~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~-----------------------------~A~~~ 378 (482)
..|-+ + +|-.| +..-...++..+....+.. .-..+
T Consensus 329 ~~y~~--k-fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~ 405 (932)
T KOG2053|consen 329 SYYFK--K-FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAY 405 (932)
T ss_pred HHHHH--H-hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 43322 1 23222 1112233344333222111 11111
Q ss_pred HHcC------C------CCCCH---------HHHHHHHHHHHhcCCHh---HHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 379 IMGI------P------IKPDA---------ILWRSLLSACNVHGDVA---LGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 379 ~~~~------~------~~p~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
+.+. | .-|+. .+.+.|+..|.+.+|.. +|+-+++......+ -|..+-.
T Consensus 406 ~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~--------hnf~~KL 477 (932)
T KOG2053|consen 406 VRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSP--------HNFQTKL 477 (932)
T ss_pred HHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC--------ccHHHHH
Confidence 1111 1 12222 24467778888887755 57778888888877 6777888
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhcCCccCC
Q 011587 435 ALSNIYASAERWPDVESVRKQMKVKRVETEP 465 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 465 (482)
.+++.|.-.|-+..|.++++.+.-++|..+.
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 9999999999999999999999877776654
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.8e-05 Score=69.50 Aligned_cols=184 Identities=13% Similarity=0.024 Sum_probs=127.7
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC-H---HHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN-V---LTW 288 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~ 288 (482)
.....+..+...+...|+++.|...++++.......+.....+..+..++...|++++|...++++.+ |+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35667888889999999999999999999887621011224678889999999999999999999974 32 2 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHH
Q 011587 289 TAMATGMAIH--------GKGNEAIRLLDSMRDCGVKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY 359 (482)
Q Consensus 289 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 359 (482)
..+..++... |++++|.+.|+++.... |+. .....+... .. . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---H------HHHH-H--------HHH
Confidence 5556666654 77899999999998763 332 222222111 00 0 0000 1 112
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCC---C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIK---P-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..+...|.+.|++++|...+++. ... | ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788899999999888877 222 2 356788888999999999999998887776554
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=0.00039 Score=67.97 Aligned_cols=337 Identities=10% Similarity=0.052 Sum_probs=210.4
Q ss_pred CCChhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh-C----
Q 011587 71 PPNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-G---- 139 (482)
Q Consensus 71 ~~~~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~---- 139 (482)
.-|..+-..++.. |+.+.|.+-.+.++ +...|..+.+.|.+.+ + ++-|.-.+..|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~-R--LDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTR-R--LDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhc-c--ccHHHHhhhhhhhhhhHHHH
Confidence 4466666666665 99998888777665 5578889999999888 7 77776655554321 1
Q ss_pred ----CCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc
Q 011587 140 ----FMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP 215 (482)
Q Consensus 140 ----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p 215 (482)
-.++ ..-....-.....|.+++|+.+|++..+ |..|-+.|.. .|.|++|+++-+.-. .+..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs-----~g~w~eA~eiAE~~D----RiHL 857 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQS-----QGMWSEAFEIAETKD----RIHL 857 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHh-----cccHHHHHHHHhhcc----ceeh
Confidence 1222 2222333344577999999999988764 3344455666 889999988877532 2322
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHH----------HHhCC-------CCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYM----------EKTFY-------MPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~-------~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
..||..-..-+...++.+.|.++|++. +.... .-..+...|.-....+-..|+.+.|+.+|.
T Consensus 858 -r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 858 -RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred -hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 345555556666677788777777652 22110 001244555555666667888888888887
Q ss_pred hccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-----CC
Q 011587 279 RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-----VE 353 (482)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~ 353 (482)
... -|-+++...|-.|+.++|-++-++ .| |......+...|-+.|++.+|...|.+...-.+ .+
T Consensus 937 ~A~-----D~fs~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKE 1005 (1416)
T KOG3617|consen 937 SAK-----DYFSMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKE 1005 (1416)
T ss_pred Hhh-----hhhhheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 466677777888999999887655 22 556666788999999999999999887765100 00
Q ss_pred cCHHHHHHHHHHH--hccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH--------HhcCCCccc
Q 011587 354 PHIKHYSCIVDLL--GRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL--------LQLQPEVTF 423 (482)
Q Consensus 354 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~ 423 (482)
.+ .-..|.... ....+.-.|.++|++.|...+ ..+..|-+.|.+.+|+++.-+. +..+.+.
T Consensus 1006 nd--~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-----~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~-- 1076 (1416)
T KOG3617|consen 1006 ND--MKDRLANLALMSGGSDLVSAARYYEELGGYAH-----KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA-- 1076 (1416)
T ss_pred cC--HHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-----HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC--
Confidence 01 111222222 233345566777877753322 2334566777777776654322 1122211
Q ss_pred ccccCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
..|+...+--.+.++...++++|..++-..
T Consensus 1077 ---~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1077 ---GSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred ---CCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 257777777788888888888887766543
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=1.1e-05 Score=77.35 Aligned_cols=212 Identities=10% Similarity=-0.018 Sum_probs=151.0
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcC
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHG 299 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 299 (482)
.+...+.+.|-...|..++++. ..|...+..|+..|+..+|..+..+-.+ |+...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 4445555666666666666543 3445567777777777777777665543 56666766666665555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (482)
-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- .+.-..+|-.+.-+..+.+++..|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 567777776654322 1111222223467888888888877763 2334568888888888999999999998
Q ss_pred HcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 380 MGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 380 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
... ...| +...||.+-.+|.+.|+-.+|...+.++.+.+. .+...|...+-...+.|.+++|.+.+.++.
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--------~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--------QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--------CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 877 6677 567899999999999999999999999999887 677777777778889999999999988887
Q ss_pred hcCC
Q 011587 458 VKRV 461 (482)
Q Consensus 458 ~~~~ 461 (482)
+...
T Consensus 615 ~~~~ 618 (777)
T KOG1128|consen 615 DLRK 618 (777)
T ss_pred Hhhh
Confidence 5433
No 116
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=0.00019 Score=65.28 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=144.7
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCH-HHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTD-TTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.++.++|+.++.++. .+.|+. .+|+.-..++...+ +++++...++++.+.. +.+..+|+.....+.+.|+.
T Consensus 50 ~e~serAL~lt~~aI----~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n---pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 50 DERSPRALDLTADVI----RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN---PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC---CcchHHhHHHHHHHHHcCch
Confidence 677888888888876 344543 35555555555666 5788888888888877 66777777666666666653
Q ss_pred --HHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---Cc----HHH
Q 011587 271 --DNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA---GL----VEE 338 (482)
Q Consensus 271 --~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~----~~~ 338 (482)
+++..+++++.+ .|..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 667888877764 46778888888888888899999999999887655 555665555544443 22 245
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc----CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC----------
Q 011587 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA----GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHG---------- 402 (482)
Q Consensus 339 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---------- 402 (482)
......++.. ..+-|...|+.+...+... ++..+|.+++.+. ...| +......|+..|+...
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 6666666665 3355667777777777663 3345677777665 3333 5667777888777532
Q ss_pred --------CHhHHHHHHHHHHhcCC
Q 011587 403 --------DVALGEKVGKILLQLQP 419 (482)
Q Consensus 403 --------~~~~a~~~~~~~~~~~~ 419 (482)
..++|.++++.+.+.+|
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCc
Confidence 23567777776654444
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=5.4e-05 Score=76.78 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=153.9
Q ss_pred cCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---C--
Q 011587 210 VSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---K-- 283 (482)
Q Consensus 210 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~-- 283 (482)
.....| +...+..|+..+...+++++|.++.+...+.. +.....|..+...+.+.++++++..+ .+.. .
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 345556 45688899999999999999999999777766 55666666666688888888777666 3321 1
Q ss_pred -----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 284 -----------------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 284 -----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+..++..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|+.. +.++|.+++.+.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 22466778888999999999999999999987 34788999999999999 999999999998
Q ss_pred HHhcCCCcCHHHHHHHHH---HHhc--cCCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 011587 347 KSKWGVEPHIKHYSCIVD---LLGR--AGHLEEAYNFIMGI----PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~li~---~~~~--~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 417 (482)
... -+ +..-|+.+.. -++. ..+.+.-.++.+.+ +...-+.++-.+-..|...++++++..+++.+++.
T Consensus 176 V~~-~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 176 IYR-FI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHH-HH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 874 11 1112222222 1111 12233333333332 33334555666667788889999999999999999
Q ss_pred CCCcccccccCCchhHHHHHHHHH
Q 011587 418 QPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
++ .|.....-++..|.
T Consensus 253 ~~--------~n~~a~~~l~~~y~ 268 (906)
T PRK14720 253 DN--------KNNKAREELIRFYK 268 (906)
T ss_pred CC--------cchhhHHHHHHHHH
Confidence 99 78888888888877
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.44 E-value=0.00092 Score=58.82 Aligned_cols=303 Identities=11% Similarity=0.037 Sum_probs=164.9
Q ss_pred HHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhH-HHHHHHHHHh
Q 011587 78 NTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV-ATTLIHFYAS 156 (482)
Q Consensus 78 ~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 156 (482)
+.++..|.+.+|+.-|...++.+ |.+-.++.--...|...| . -..|..=+...++. +||-.. -..-...+.+
T Consensus 46 k~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmG-k--sk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMG-K--SKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhc-C--CccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34444477778887777777632 312222222234455555 4 55666666666655 565322 1222345677
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|.++.|..=|+.+.+.++.- +....+..+ . ...+++ ......+..+...|+...|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-----l-------~~~~e~-----------~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSK-----L-------ALIQEH-----------WVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHH-----H-------HhHHHH-----------HHHHHHHHHHhcCCchhhH
Confidence 788888877777665432210 000111111 0 000111 1122233344456666666
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
......+++.. +-+...+..-..+|...|++..|+.=++... ..+..++-.+-..+...|+.+.++...++-.+
T Consensus 175 i~~i~~llEi~---~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ---PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhcC---cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 66666666655 5566666666777777777777665554443 34555555555666666776666666666655
Q ss_pred CCCCCCHHH----HH---HHHH------HHhccCcHHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHhccCCHHHH
Q 011587 314 CGVKPNAVT----FT---SLFA------ACCHAGLVEEGLHLFDNMKSKWGVEPH-----IKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 314 ~g~~p~~~~----~~---~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A 375 (482)
. .||... |. .+.. .....+++.++..-.+...+. .|. ...+..+-.++...+++-+|
T Consensus 252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHH
Confidence 3 333321 11 1111 122345566666666665552 222 22334455566667777777
Q ss_pred HHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 376 YNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 376 ~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...+. .+.|+ +.++.-=..+|.-...++.|+.-|+.+.+.++
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 7776666 55564 66666666777777777777777777777666
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=2.2e-05 Score=73.37 Aligned_cols=252 Identities=11% Similarity=-0.001 Sum_probs=185.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|+..+|.-.|+... . .-+-+...|..|.......++-..|+..+.+.++.. +.+..+..+|.-.|...|.-..
T Consensus 298 nG~L~~A~LafEAAV--k-qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAV--K-QDPQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred cCCchHHHHHHHHHH--h-hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHHH
Confidence 888999999999876 2 223367789999999999999999999999999998 7899999999999999999999
Q ss_pred HHHHHHhccCCC-HHHHHHHH---------HHHHhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 011587 273 ALLIFSRMREKN-VLTWTAMA---------TGMAIHGKGNEAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLH 341 (482)
Q Consensus 273 A~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 341 (482)
|...++...... ...|...- ..+.....+....++|-++ ...+..+|......|--.|--.|++++|.+
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998764211 00000000 1112222344555555555 455555777788888888888999999999
Q ss_pred HHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 342 LFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|+.+.. --+-|...||.|...++...+.++|+..|.+. .++|+- ...-.|.-+|...|.+++|.+.|=.++....
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999998 34556789999999999999999999999988 788863 3455577789999999999999988887655
Q ss_pred Ccccccc--cCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 420 EVTFVDV--ACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 420 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
......- .++...|..|=.++.-.++.|-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2000000 02345677777777777777655443
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=1.9e-05 Score=63.04 Aligned_cols=121 Identities=9% Similarity=-0.021 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI 384 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 384 (482)
.+|++..+. .|+. +......+...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445554443 2332 44456667778888888888888776 33456777778888888888888888888877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 385 KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 385 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
.| +...+..+..++...|+.++|...|+.+++..| .+...+.....++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p--------~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY--------ADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHH
Confidence 44 667777777788888888888888888888887 5666655544443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=1.9e-05 Score=75.79 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=170.9
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
.+...+.. .|-...|+.+|++.. .|.-++.+|+..|+..+|..+..+-.+ . +++...|..
T Consensus 403 ~laell~s-----lGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le-k---~~d~~lyc~ 462 (777)
T KOG1128|consen 403 LLAELLLS-----LGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE-K---DPDPRLYCL 462 (777)
T ss_pred HHHHHHHH-----cchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc-C---CCcchhHHH
Confidence 45566667 888999999999875 677889999999999999999988887 3 668998999
Q ss_pred HHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 339 (482)
+.+.....--+++|.++++..... +-..+.....+.++++++.+.|+.-.+.+ +-...+|...-.+..+.+++..|
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 888887777788999988876544 22222222345789999999999876653 22556787788888899999999
Q ss_pred HHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQL 417 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 417 (482)
.+.|..... +-+-+...||.+-.+|.+.|+-.+|...+.+. .. .-+...|...+-...+.|.+++|.+.+.++...
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999987 66667889999999999999999999999988 21 335566777777888999999999999998875
Q ss_pred CC
Q 011587 418 QP 419 (482)
Q Consensus 418 ~~ 419 (482)
..
T Consensus 617 ~~ 618 (777)
T KOG1128|consen 617 RK 618 (777)
T ss_pred hh
Confidence 54
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=5.9e-05 Score=75.64 Aligned_cols=171 Identities=12% Similarity=0.049 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 5778888888889999999999999998886 444 45666778888899999999999999988 445567777888
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
..++...|++++|..+|++. .-.| +..++..+..++...|+.++|...|+++++... +-...|+-++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--------~~~~~~~~~~--- 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--------DGARKLTRRL--- 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------cchHHHHHHH---
Confidence 88889999999999999988 2234 477888888888999999999999999988777 5555554433
Q ss_pred HhCCCchHHHHHHHHhHhcCCccCCcccEEEe
Q 011587 441 ASAERWPDVESVRKQMKVKRVETEPGSSILQT 472 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 472 (482)
++...-..+++.+.-.+......++.+.+
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (694)
T PRK15179 230 ---VDLNADLAALRRLGVEGDGRDVPVSILVL 258 (694)
T ss_pred ---HHHHHHHHHHHHcCcccccCCCceeeeeH
Confidence 23444556677766666655555555443
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.0015 Score=60.95 Aligned_cols=388 Identities=9% Similarity=-0.015 Sum_probs=227.0
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+++.|...+.......- ++++.++-=...|++. |.+++|.+=-..-. .|+ ...|+..-.+ |++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCC-CccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 888889888887776553 3677776667788888 89988886544433 232 2345544333 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCc-chhhhHHHHHHHHHHhC---CCCchhHHHHHHHHHHh----------C
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSL-STLWLGRQIHVHVTKRG---FMFNVLVATTLIHFYAS----------N 157 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~-~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~----------~ 157 (482)
-|.+=++.. |.|...+..+..++.... . ++.-.--.++..+.... .......|..++..+-+ .
T Consensus 92 ay~~GL~~d--~~n~~L~~gl~~a~~~~~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 92 AYSEGLEKD--PSNKQLKTGLAQAYLEDY-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHhhcC--CchHHHHHhHHHhhhHHH-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999988854 657888888888773221 1 00000011111111100 00011122222222211 1
Q ss_pred CChhHHHHHhcc-----------C-----CCC------------C----------chhHHHHHHHHhcCCcccccchHHH
Q 011587 158 KDISSGKKVFDQ-----------M-----PMR------------S----------SATWNAMINGYCSQSKKAKDCAFNA 199 (482)
Q Consensus 158 g~~~~A~~~~~~-----------~-----~~~------------~----------~~~~~~li~~~~~~~~~~~~~~~~a 199 (482)
.++..|.-.+.. + ..| | ..-...+.++..+ ..++..|
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk-----kk~f~~a 243 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK-----KKDFETA 243 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH-----hhhHHHH
Confidence 111112111111 0 011 0 0124456666777 7888889
Q ss_pred HHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH-------HHHHHHcCCChHH
Q 011587 200 LVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA-------LVDMYSKCGCLDN 272 (482)
Q Consensus 200 ~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~-------li~~~~~~g~~~~ 272 (482)
++-+.... . +.-+..-++....++...|.+..+...-+...+.|. ....-|+. +..+|.+.++++.
T Consensus 244 ~q~y~~a~--e--l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr---e~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 244 IQHYAKAL--E--LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR---ELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHH--h--HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH---HHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 99888876 3 333444455666778888888888877777777663 22333333 3446667788999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 273 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
|+..|.+...+... -....+....+++....+...-.+ |.. .-...=...+.+.|++..|...|.+++++
T Consensus 317 ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-- 387 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-- 387 (539)
T ss_pred HHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--
Confidence 99999886542111 111223334455555544443332 222 11222245566788899999999888884
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT 429 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
.+-|...|....-+|.+.|.+..|+.-.+.. .+.| ....|.-=..++....+++.|.+.|++.++.+| .+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp--------~~ 459 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP--------SN 459 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------hh
Confidence 3667788888888888888888887766655 3344 334444445555666788888888888888887 55
Q ss_pred chhHHHHHHHHHh
Q 011587 430 SEDFVALSNIYAS 442 (482)
Q Consensus 430 ~~~~~~l~~~~~~ 442 (482)
......+.++...
T Consensus 460 ~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 460 AEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=1.3e-05 Score=63.91 Aligned_cols=107 Identities=8% Similarity=-0.076 Sum_probs=91.3
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
.++++..+. .|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~~---~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV---DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc---CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555542 344 4566788889999999999999988 5555 77888999999999999999999999999999
Q ss_pred CCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
| .+...+..+..++.+.|++++|...++...+..
T Consensus 89 p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 A--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9 899999999999999999999999999987544
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=6.8e-05 Score=63.40 Aligned_cols=157 Identities=13% Similarity=0.006 Sum_probs=108.9
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHhccCC-C--CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH
Q 011587 143 NVLVATTLIHFYASNKDISSGKKVFDQMP-M--RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219 (482)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~ 219 (482)
|..+ ..+-..+.-.|+-+....+..... . .|....+..+....+ .|++..|+..+++. ...-++|..+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-----~g~~~~A~~~~rkA---~~l~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-----NGNFGEAVSVLRKA---ARLAPTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHH-----hcchHHHHHHHHHH---hccCCCChhh
Confidence 4444 555566666777777666666543 2 244455557777777 88888888888877 4455667778
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMA 296 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 296 (482)
|+.+.-+|.+.|+.++|...|.+..+.. +.+....+.+.-.|.-.|+.+.|..++..... .|..+-..+.....
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELA---PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhc---cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 8888888888888888888888777776 45666677777777777788888777776652 35666666777777
Q ss_pred hcCChHHHHHHHHHH
Q 011587 297 IHGKGNEAIRLLDSM 311 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m 311 (482)
..|+++.|.++...-
T Consensus 214 ~~g~~~~A~~i~~~e 228 (257)
T COG5010 214 LQGDFREAEDIAVQE 228 (257)
T ss_pred hcCChHHHHhhcccc
Confidence 777777777766543
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00028 Score=59.82 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=90.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc---
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR--- 368 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 368 (482)
...|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|.+ --+..+.+.|..+|.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhc
Confidence 345667777777777766521 122222223334455677777777777766 1345566656655543
Q ss_pred -cCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 369 -AGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 369 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
.+...+|.-+|++| +..|+..+.+....++...|++++|+.++++++...+ .++.+...++..-...|.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~--------~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA--------KDPETLANLIVLALHLGK 256 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC--------CCHHHHHHHHHHHHHhCC
Confidence 34567777777777 3567777777777777777777777777777777777 566666666665555555
Q ss_pred chHH-HHHHHHhH
Q 011587 446 WPDV-ESVRKQMK 457 (482)
Q Consensus 446 ~~~a-~~~~~~m~ 457 (482)
-.++ .+.+.+++
T Consensus 257 d~~~~~r~l~QLk 269 (299)
T KOG3081|consen 257 DAEVTERNLSQLK 269 (299)
T ss_pred ChHHHHHHHHHHH
Confidence 4333 33444444
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00071 Score=57.47 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=121.0
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.++.+.+..... ..+......-...|++.|++++|++..+....-.....+ +..+.+..+++-|.+.+++|.+-.
T Consensus 93 ~~l~E~~a~~~~--~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 93 ASLYELVADSTD--GSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHHHhhcc--chhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-
Confidence 344555554443 223333444456788999999999998884433333333 444667788899999999998753
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHH
Q 011587 317 KPNAVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAIL 390 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~ 390 (482)
+..|.+.|..++.+ .+.+..|.-+|++|.. ..+|+..+.+-...++...|++++|..++++. ....++.+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 56677767776654 4568889999999987 57888889888888889999999999999887 33346666
Q ss_pred HHHHHHHHHhcCCH-hHHHHHHHHHHhcCC
Q 011587 391 WRSLLSACNVHGDV-ALGEKVGKILLQLQP 419 (482)
Q Consensus 391 ~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 419 (482)
...++-+-...|.. +.-.+.+.+.....|
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 66666555555544 445567777766666
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00017 Score=72.34 Aligned_cols=146 Identities=7% Similarity=-0.033 Sum_probs=124.0
Q ss_pred CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHH
Q 011587 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTW 288 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~ 288 (482)
....+...+..|.....+.|++++|+..++...+.. |.+......+...+.+.+++++|...+++... | +....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence 344568889999999999999999999999999988 77888899999999999999999999999985 3 55677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
..+..++.+.|++++|..+|++....+ +-+..++..+..++-..|+.++|...|++..+ ...+....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHHH
Confidence 888889999999999999999999843 23577888899999999999999999999998 4455556665544
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.25 E-value=0.00017 Score=71.76 Aligned_cols=343 Identities=10% Similarity=-0.002 Sum_probs=174.6
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
.+...|+..|-+..+.. |.-...|..+-..|...- + ...|.+.|+...+.+ +-+........+.|++..+++.|
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~-D--m~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSD-D--MKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHH-H--HHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 45555555555555533 323446666666666666 6 777777777777654 34566677777777777777777
Q ss_pred HHHhccCCCCC-----chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHH
Q 011587 164 KKVFDQMPMRS-----SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 164 ~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
..+.-...+.+ ...|-...-.|.+ .++...|+.-|+... .+.| |...|..+..+|...|++..|.
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLe-----a~n~h~aV~~fQsAL----R~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLE-----AHNLHGAVCEFQSAL----RTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccC-----ccchhhHHHHHHHHh----cCCchhHHHHHHHHHHHHhcCceehHH
Confidence 77732222111 1122222233444 555666665555543 2333 4445666666666666666666
Q ss_pred HHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC----------CHHHHHHHHHHHHhcCChHHHHHH
Q 011587 238 CVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK----------NVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
++|.++.... |.+...-.-..-.-+..|.+.+|...+..+... -..++-.+...+...|-..++.++
T Consensus 617 KvF~kAs~Lr---P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~ 693 (1238)
T KOG1127|consen 617 KVFTKASLLR---PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF 693 (1238)
T ss_pred HhhhhhHhcC---cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 6666555444 333333333333445555555555555544310 011111111111111111111111
Q ss_pred HHH-------------------------------------------------HHhCCCCCC-------------------
Q 011587 308 LDS-------------------------------------------------MRDCGVKPN------------------- 319 (482)
Q Consensus 308 ~~~-------------------------------------------------m~~~g~~p~------------------- 319 (482)
+++ ....+..|+
T Consensus 694 ~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~ 773 (1238)
T KOG1127|consen 694 FEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI 773 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh
Confidence 111 111111111
Q ss_pred -HHHHHHHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCH
Q 011587 320 -AVTFTSLFAACCH--------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDA 388 (482)
Q Consensus 320 -~~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~ 388 (482)
..+|..+...|.+ ..+...|...+....+ -...+..+|+.|.-. ...|.+.-|...|-+. ..+...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccch
Confidence 1111111111111 1112244444444443 112233444444333 3334555554444333 222356
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
.+|..+...+.+..|++.|...|.......| .|...|..........|+.-++..+|..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP--------~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDP--------LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCc--------hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 6777777778888899999999999999999 7888887777777777877777777654
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00085 Score=62.01 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 399 (482)
-|..-+.. ...|+.++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+..++.
T Consensus 309 ~YG~A~~~-~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQT-YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHH-HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 34433433 355777777777777776 44555556666667777777777777777777 45565 445556667777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
+.|++.+|...+++.....| .|+..|..|..+|...|+..++....-+
T Consensus 386 ~~g~~~eai~~L~~~~~~~p--------~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDP--------EDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred hcCChHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77777777777777777777 6777777777777777766665554433
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=5e-05 Score=70.42 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=97.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666666778899999999998885 244 4445777887888888888888877 3334 6666776777788
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.++++.|..+.+++.+..| .+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP--------~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSP--------SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 89999999999999999998 788899999999999999999998888775
No 132
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.24 E-value=0.0044 Score=60.16 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=84.7
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCc--hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhh
Q 011587 151 IHFYASNKDISSGKKVFDQMPMRSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228 (482)
Q Consensus 151 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~ 228 (482)
+.+......|.+|+.+++.+....+ --|..+...|.. .|+++.|.++|.+.. .++-.+..|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan-----~~dfe~ae~lf~e~~-----------~~~dai~my~ 802 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN-----KGDFEIAEELFTEAD-----------LFKDAIDMYG 802 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc-----chhHHHHHHHHHhcc-----------hhHHHHHHHh
Confidence 3444455566666666665553322 234445555555 666666666665432 2334455566
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLL 308 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 308 (482)
+.|+|+.|.++-.+.. |. +.....|-+-..-.-+.|++.+|+++|-.+.+|+. -|..|-+.|..+..+++.
T Consensus 803 k~~kw~da~kla~e~~--~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred ccccHHHHHHHHHHhc--Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHH
Confidence 6666666655543321 21 33444555555555566666666666666665553 244555666666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
.+-.-.. -..|...+..-+-..|+...|+.-|-
T Consensus 874 ~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 874 EKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHhChhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 4422111 12233344444445555555554443
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=6.7e-05 Score=69.60 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
+.....+|+..+...++++.|+.+|+++.+.+......++..+...++-.+|.+++++..+.. +-+......-...+.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 444556677778888999999999999998777777778888888899999999999988763 3356666666777889
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 386 (482)
.++.+.|..+.+++.+ -.+-+..+|..|..+|...|+++.|+..+..++..+
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999998 344556699999999999999999999999885443
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.7e-06 Score=49.16 Aligned_cols=33 Identities=27% Similarity=0.635 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 319 (482)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=4.5e-06 Score=47.83 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP 318 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 318 (482)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0014 Score=55.30 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV-LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..+|..++-+....|+.+.|...++.+.. |+. .+-..-...+-..|++++|+++++.+.+.+ +.|..++..=+...
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 44455566666677777777777777653 211 111111122345688888888888888776 33666776666666
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcC---CHh
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHG---DVA 405 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~ 405 (482)
-..|+.-+|++-+....+ .+..|...|..+.+.|...|++++|.-.++++ -+.| +...+..+...+.-.| +.+
T Consensus 131 ka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 666777788888888887 56778888988999999999999998888888 4455 4445555555544333 566
Q ss_pred HHHHHHHHHHhcCC
Q 011587 406 LGEKVGKILLQLQP 419 (482)
Q Consensus 406 ~a~~~~~~~~~~~~ 419 (482)
.+.+.|.+.++..+
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 78888888888777
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=6e-05 Score=59.66 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
.....+...+...|++++|...++.+.. ..+.+...+..+...+...|++++|...++.. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444555666667777777777777666 22445666666667777777777777766655 3333 455555566666
Q ss_pred HhcCCHhHHHHHHHHHHhcCC
Q 011587 399 NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|++++|...++...+..|
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhcc
Confidence 677777777777777777666
No 138
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.08 E-value=0.014 Score=59.00 Aligned_cols=390 Identities=9% Similarity=-0.065 Sum_probs=224.4
Q ss_pred CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCC---hhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhh
Q 011587 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPN---LFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFT 108 (482)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~ 108 (482)
.+..........|+.. .+++.|..+.-...+.+ ...+|-.-.+ ++..+|+.-|+...+.. |.|...
T Consensus 524 tdaeaaaa~adtyae~---~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~ 598 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEE---STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNL 598 (1238)
T ss_pred hhhhhHHHHHHHhhcc---ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHH
Confidence 4455668888899998 99999988743332221 1223333333 88999999999998854 668899
Q ss_pred HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhccCCCC----------Cchh
Q 011587 109 YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFDQMPMR----------SSAT 177 (482)
Q Consensus 109 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~ 177 (482)
|..+..+|.++| . ...|.++|.+.... .|+ ...--...-+-+..|.+.+|++.+..+... -..+
T Consensus 599 W~gLGeAY~~sG-r--y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 599 WLGLGEAYPESG-R--YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHHhcC-c--eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999999 8 99999999988765 343 222222333456779999999888766421 1112
Q ss_pred HHHHHHHHhcCCc--ccccchHHHHHHHHHhhhccCC--------------------C---CcCHHHHHHHHHHhhccCc
Q 011587 178 WNAMINGYCSQSK--KAKDCAFNALVLFRDMLVDVSG--------------------V---KPTDTTMVCVLSVSSQLGL 232 (482)
Q Consensus 178 ~~~li~~~~~~~~--~~~~~~~~a~~~~~~m~~~~~~--------------------~---~p~~~~~~~l~~~~~~~~~ 232 (482)
+-.+...+.-.|- ....-++++++.|.-.. ... + .|+.....++..-.-..+.
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l--~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSL--IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 2222222222000 00111222222222221 111 1 1222222222221212221
Q ss_pred h---H---HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc-------CC-ChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 233 L---E---FGACVHGYMEKTFYMPENDVFIGTALVDMYSK-------CG-CLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 233 ~---~---~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
. + .+.+.+-.-+ .. ..+...|..|+..|.+ .+ +...|+..+.+..+ .+...||.|.-.
T Consensus 752 l~~~d~l~Lg~~c~~~hl--sl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl- 826 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHL--SL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL- 826 (1238)
T ss_pred CcchhHHHHHHHHhhHHH--HH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-
Confidence 1 1 0001110001 11 1123344444444333 11 23466777766653 566778877665
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (482)
...|++.-+...|-+-.... +.+..+|..+-..+.+..+++.|...|..... -.+.+...|--........|+.-++
T Consensus 827 sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~ 903 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIER 903 (1238)
T ss_pred hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHH
Confidence 66678888888887766653 33667787788888899999999999999887 4455666665555445567888888
Q ss_pred HHHHHcC-------CCCCCHHHHHHHHHHHHhcCCHhHH----------HHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 376 YNFIMGI-------PIKPDAILWRSLLSACNVHGDVALG----------EKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 376 ~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
..+|..- +-.|+..-|-....-....|+.++- .-.+++.....| .....|.+...
T Consensus 904 ~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p--------~~~fAy~~~gs 975 (1238)
T KOG1127|consen 904 LILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP--------QLCFAYAANGS 975 (1238)
T ss_pred HHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc--------chhHHHHHHHh
Confidence 8888762 3345555444444444455555443 334444445555 56778888887
Q ss_pred HHHhCCCchHHHHHHHH
Q 011587 439 IYASAERWPDVESVRKQ 455 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~ 455 (482)
...+.+.+.+|..+..+
T Consensus 976 tlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 976 TLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788877777665444
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.0002 Score=56.63 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+......+...+...|++++|.+.|+.....+ +.+...+..+...+.+.|++++|..+++...+ ..+.+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 44556677788899999999999999998865 33777888899999999999999999999887 3466778888889
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCCCHHHHHHH
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKPDAILWRSL 394 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 394 (482)
..|...|++++|...|++. ...|+...+..+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 9999999999999999887 555655554433
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0025 Score=59.02 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 372 (482)
.+...|++++|+..++.+...- +-|..........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 3445677777777777766652 224444445555677777777777777777763 333 55556667777777777
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 373 EEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 373 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.+|..+++.. ..+-|+..|..|..+|...|+..++.....+...
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7777777766 3334677777777777777776666655554443
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0067 Score=51.36 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=140.1
Q ss_pred ccchHHHHHHHHHhhhc-cCC-CCcCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 193 KDCAFNALVLFRDMLVD-VSG-VKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~-~~~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
..+.++.++++.++... ..| ..|+.. .|..++-+....|+.+.|...++++...- |.+..+-..-.-.+-..|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhc
Confidence 66788888888877621 234 566666 45677778888999999999999988765 4454444444445667899
Q ss_pred hHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 270 LDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 270 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+++|+++|+.+.+. |.+++-.-+...-..|+.-+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999863 4566666666667778888898888887776 5669999999999999999999999999999
Q ss_pred HHhcCCCcCHHHHHHHHHHHhccC---CHHHHHHHHHcC-CCCC
Q 011587 347 KSKWGVEPHIKHYSCIVDLLGRAG---HLEEAYNFIMGI-PIKP 386 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~p 386 (482)
.- --|.+...+..+.+.+--.| +.+.|.++|.+. .+.|
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 86 33455666667777665544 456678888776 4445
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.7e-05 Score=45.35 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.+|+.++.+|.+.|+++.|.+++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999876
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00084 Score=53.73 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH--HHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI--KHYSCI 362 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 362 (482)
.|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+... ...++. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 455555555 3677788877788877753221 1223334556677788888888888888874 322221 233445
Q ss_pred HHHHhccCCHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGIPI-KPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
...+...|++++|+..++...- ......+......+...|+.++|...|+.+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777788888888888877521 224455566677788888888888888764
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.92 E-value=0.00048 Score=55.13 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=47.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCc---hhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH----HHHHHHHHHHHhcCC
Q 011587 230 LGLLEFGACVHGYMEKTFYMPEND---VFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV----LTWTAMATGMAIHGK 300 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~ 300 (482)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.. ++. ...-.+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 444444444444444443 222 22223334445555555555555554442 111 122233444455555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
+++|+..++..... ......+......+.+.|+.++|...|+.
T Consensus 101 ~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555442221 11223333444455555555555555543
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=1.6e-05 Score=45.74 Aligned_cols=34 Identities=38% Similarity=0.769 Sum_probs=31.8
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT 216 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 216 (482)
.+||++|.+|++ .|++++|.++|++|. ..|++||
T Consensus 1 ~~~n~li~~~~~-----~~~~~~a~~~~~~M~--~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCK-----AGRVEEALELFKEML--ERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHH-----CCCHHHHHHHHHHHH--HcCCCCC
Confidence 379999999999 999999999999999 8899997
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.87 E-value=0.0033 Score=60.02 Aligned_cols=220 Identities=16% Similarity=0.068 Sum_probs=117.4
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMING 184 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 184 (482)
+.-.++..=++|.+-+ +-++-+..--++++.++|-.|+... +...++-.|++.+|-++|.+
T Consensus 597 eAL~f~~ARkAY~rVR-dl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~--------------- 657 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVR-DLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR--------------- 657 (1081)
T ss_pred hhhhhHHHHHHHHHHh-ccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---------------
Confidence 3345666667777777 6334444445566777787777654 56778888999999999876
Q ss_pred HhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHh--CCCCCCchhHHHHHHH
Q 011587 185 YCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT--FYMPENDVFIGTALVD 262 (482)
Q Consensus 185 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~~~li~ 262 (482)
.|...+|+++|..|+ ..-...-+...|..++-..+.++-.+. +.. +| .+...
T Consensus 658 --------~G~enRAlEmyTDlR------------MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-eP-----kaAAE 711 (1081)
T KOG1538|consen 658 --------SGHENRALEMYTDLR------------MFDYAQEFLGSGDPKEKKMLIRKRADWARNIK-EP-----KAAAE 711 (1081)
T ss_pred --------cCchhhHHHHHHHHH------------HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC-Cc-----HHHHH
Confidence 666666777777765 111223334444444433333322111 100 11 23344
Q ss_pred HHHcCCChHHHHHH-------------HHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 263 MYSKCGCLDNALLI-------------FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 263 ~~~~~g~~~~A~~~-------------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
.+...|+.++|..+ -+++...+..+...+..-+.+...+.-|.++|.+|-+. ..+++.
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVql 782 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQL 782 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhh
Confidence 45555555555443 33333333444444444444555566666666665432 135555
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCC
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 383 (482)
+...+++++|..+-++..+ +.|+ .|--..+-++...++++|.+.|.+.|
T Consensus 783 Hve~~~W~eAFalAe~hPe---~~~d--Vy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPE---FKDD--VYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred eeecccchHhHhhhhhCcc---cccc--ccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 6666666666666555543 2333 22333444555566666655555443
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2e-05 Score=43.94 Aligned_cols=30 Identities=30% Similarity=0.624 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566677777777777777777777766653
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00041 Score=53.33 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGV-EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLL 395 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 395 (482)
++..+...+.+.|++++|...|..+.+.+.- ......+..+...+.+.|++++|.+.|+.. ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4445666666777777777777777763111 111345556777777778888887777766 22232 34566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 396 SACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++.+.|+.++|...++++++..|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777778888888888888888777
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.83 E-value=0.00045 Score=50.47 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCcCHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPNAVTFTSLFAACCHAG--------LVEEGLHLFDNMKSKWGVEPHIK 357 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 357 (482)
+....|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++.....+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344456666677999999999999999999 899999999999887643 355678899999984 8999999
Q ss_pred HHHHHHHHHhc
Q 011587 358 HYSCIVDLLGR 368 (482)
Q Consensus 358 ~~~~li~~~~~ 368 (482)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00029 Score=51.33 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (482)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++...+..+ .+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP--------DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------cchhHHHHH
Confidence 344555566667777777776665 3333 334555566666667777777777777777666 455666677
Q ss_pred HHHHHhCCCchHHHHHHHHhHh
Q 011587 437 SNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...+...|++++|...++...+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 7777777777777777666553
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.00041 Score=54.69 Aligned_cols=92 Identities=10% Similarity=-0.034 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHH
Q 011587 358 HYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVA 435 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (482)
..-.+...+...|++++|.++|+-. .+.| +..-|-.|..++...|++++|...|..+...+| .++..+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--------ddp~~~~~ 108 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--------DAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCchHHHH
Confidence 3344445556667777777777766 3344 445556666666667777777777777777777 67777777
Q ss_pred HHHHHHhCCCchHHHHHHHHhH
Q 011587 436 LSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+..++...|+.+.|.+.|+...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777776554
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0013 Score=59.11 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
.+|..++...-+.+..+.|..+|.+..+.+ +........+++..+ ..++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998653 233444444444433 347777899999999984 5667788999999
Q ss_pred HHhccCCHHHHHHHHHcC-CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKPDA----ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+.++.+++.+..+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988 333433 5899999999999999999999999998876
No 153
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.001 Score=62.20 Aligned_cols=123 Identities=9% Similarity=-0.010 Sum_probs=94.6
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CCCCCHH
Q 011587 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAI 389 (482)
Q Consensus 314 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~ 389 (482)
.+.+.+...+..++..+....+++.+..++.+..... ....-..|..++|+.|.+.|..+++++++..= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445577788888888888888888888888887631 11122335568899999999999999998764 8889999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
++|.||..+.+.|++..|.+++.+|...+. ..+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~-------~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEE-------FDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhc-------cCCchHHHHHHHHHHHh
Confidence 999999999999999999998888877665 35667777666666665
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=5.1e-05 Score=42.23 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999875
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00072 Score=51.92 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
.++..++..+.+.|++++|.+.|..+ ...|+ ...+..+..++.+.|+++.|...++.+....|+. .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-----PKAPD 77 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-----CcccH
Confidence 35677888899999999999999888 33343 3466678889999999999999999999987721 02356
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 432 DFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
.+..+..++.+.|++++|...++++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 788889999999999999999999987643
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.085 Score=52.92 Aligned_cols=404 Identities=12% Similarity=0.015 Sum_probs=220.6
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHH--HhcCCCCCChHHHHHHhhcCCC---CChhhHHHHhcC----CCCccH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLY--CTKKASPQSTKIVHFVFTHFDP---PNLFLFNTLIRC----TPPQDS 89 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~----~~~~~a 89 (482)
+.+..|.+-.+.+.+.. |+..+. .++.+ ..+. |..++|..+++.... .|..+...+-.. +..++|
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~~a-~vLkaLsl~r~---gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNALYA-KVLKALSLFRL---GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcHHH-HHHHHHHHHHh---cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34455555555555443 333322 23333 3456 899999999988762 244454444444 999999
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-Ch--------
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK-DI-------- 160 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-------- 160 (482)
..+|++..+.. | +..-...+..+|.|.+ + +.+-.+.=-++-+. ++-++..+=++++.+...- ..
T Consensus 97 ~~~Ye~~~~~~--P-~eell~~lFmayvR~~-~--yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 97 VHLYERANQKY--P-SEELLYHLFMAYVREK-S--YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHHhhC--C-cHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 99999999854 7 6777777778888877 6 66555544444443 3445555555666655432 12
Q ss_pred -hHHHHHhccCCCCC--chhHH-HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 161 -SSGKKVFDQMPMRS--SATWN-AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 161 -~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.-|.+.++.+.+.+ ..+-. ..+....-.. .+.+++|++++..-.. +.-...+...-+.-+..+...+++.+.
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~---~~k~~eal~~l~~~la-~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILEL---QGKYQEALEFLAITLA-EKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHh---cccHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHhcChHHH
Confidence 22444445444333 11211 2222222222 6789999999954430 222333555556778888999999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHH----------------HcCCChHHHHHHHHhccCC-CHHHHHHHHHHHH---
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMY----------------SKCGCLDNALLIFSRMREK-NVLTWTAMATGMA--- 296 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~----------------~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~--- 296 (482)
.++-.++...|. .| |...++.+ ...+..+...+..++.... .-.+|-+-+.++.
T Consensus 246 ~~l~~~Ll~k~~---Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~ 319 (932)
T KOG2053|consen 246 FELSSRLLEKGN---DD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYK 319 (932)
T ss_pred HHHHHHHHHhCC---cc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhc
Confidence 999999999984 34 33333322 1222333443333333321 2234444444443
Q ss_pred hcCChHHHHHHHHHHHhCCCCC----CHHHHH---------HHHHHHhcc------------------------C-----
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKP----NAVTFT---------SLFAACCHA------------------------G----- 334 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p----~~~~~~---------~ll~~~~~~------------------------~----- 334 (482)
.-|+.+++...|-+ +.|-.| |...|. .++..+... |
T Consensus 320 ~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l 397 (932)
T KOG2053|consen 320 LIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKL 397 (932)
T ss_pred ccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccC
Confidence 44777776654433 233333 333331 122222211 1
Q ss_pred cHHHHHHHHHHhHHh--cC------CCcCH---------HHHHHHHHHHhccCCHH---HHHHHHHcC-CCCC-CHHHHH
Q 011587 335 LVEEGLHLFDNMKSK--WG------VEPHI---------KHYSCIVDLLGRAGHLE---EAYNFIMGI-PIKP-DAILWR 392 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~--~~------~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~~~~~ 392 (482)
.-+....++.+.... .| +-|+. -+.+.|++.|.+.++.. +|+-+++.. ...| |..+--
T Consensus 398 ~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KL 477 (932)
T KOG2053|consen 398 PADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKL 477 (932)
T ss_pred ChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHH
Confidence 011222222222111 12 12232 23467788888888766 455555554 3444 555566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
.+|+.|+-.|-+..|.++|..+--++.. .|..-| .+..-+.-.|++..+...+..
T Consensus 478 lLiriY~~lGa~p~a~~~y~tLdIK~IQ-------~DTlgh-~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 478 LLIRIYSYLGAFPDAYELYKTLDIKNIQ-------TDTLGH-LIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHhcCChhHHHHHHhcchHHhh-------hccchH-HHHHHHHhcccchhHHHHHHH
Confidence 7889999999999999999987665551 222222 333445556677666665544
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.64 E-value=7.8e-05 Score=53.26 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDA-ILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|.+++++....|.. ...-.+..++.+.|++++|.+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4555555555555553111112333333455555555555555555543222222 222233444555555555555554
Q ss_pred H
Q 011587 413 I 413 (482)
Q Consensus 413 ~ 413 (482)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.00077 Score=48.96 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=41.8
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 403 (482)
+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333444445555555555544441 1222234444444445555555555555443 2122 22344445555555555
Q ss_pred HhHHHHHHHHHHhcC
Q 011587 404 VALGEKVGKILLQLQ 418 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~ 418 (482)
.+.|...+....+..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 555555555554443
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.001 Score=55.07 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=76.5
Q ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc------------
Q 011587 273 ALLIFSRM--REKNVLTWTAMATGMAIH-----GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA------------ 333 (482)
Q Consensus 273 A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------ 333 (482)
-...|+.. ...+..+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34455555 356777777777777644 67788888889999999999999999999988652
Q ss_pred ----CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 334 ----GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 334 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.+.+-|.+++++|.. +|+-||..++..+++.+++.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 245678888888888 58888988888888888877653
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.03 Score=50.55 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcC-CChHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCH
Q 011587 256 IGTALVDMYSKC-GCLDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-----PNA 320 (482)
Q Consensus 256 ~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~ 320 (482)
.+..+...|-.. |+++.|.+.|++..+ . -..++..+...+.+.|++++|.++|++....-.. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344555566666 788888888877653 1 1245667778899999999999999988764322 222
Q ss_pred H-HHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCcC--HHHHHHHHHHHhc--cCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 321 V-TFTSLFAACCHAGLVEEGLHLFDNMKSK-WGVEPH--IKHYSCIVDLLGR--AGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 321 ~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
. .|...+-++...||...|.+.+++.... .++..+ ......|+.++-. ...+++++.-|+.+. +.|..--..|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 2 2233334555678999999999988753 133333 4566777888765 346778888888874 3444433333
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.57 E-value=0.00062 Score=49.74 Aligned_cols=72 Identities=11% Similarity=-0.092 Sum_probs=62.1
Q ss_pred CCCccHHHHHHHHHHCCC-CCCChhhHHHHHHHhhhccCc-----chhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 011587 84 TPPQDSVLVFAYWVSKGL-LTFDDFTYVFALGSCARFCSL-----STLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS 156 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~-~p~~~~~~~~ll~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (482)
+++.....+|+.+++.|+ .| +..+|+.++.+.++..-+ +++-..+.+++.|+..+++|+..+|+.++..+.+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lP-sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLP-SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 889999999999999999 77 999999999999887621 1355677899999999999999999999987764
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.00034 Score=49.90 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 298 HGKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..+++. .+. +. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999887542 2455555689999999999999999998 321 21 23345556688999999999999
Q ss_pred HHHHc
Q 011587 377 NFIMG 381 (482)
Q Consensus 377 ~~~~~ 381 (482)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 163
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0013 Score=61.54 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=51.8
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTA 290 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 290 (482)
.+...+..+++.+....+++.+..++.........-..-..+..++|..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555555544433110011223333455555555544444444443332 44444455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
||..+.+.|++..|.++...|...+...+..|+..-+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 5554444455544444444444444333444443333333
No 164
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.51 E-value=0.00085 Score=55.54 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred HHhccC--CCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhcc------------
Q 011587 165 KVFDQM--PMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL------------ 230 (482)
Q Consensus 165 ~~~~~~--~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~------------ 230 (482)
..|+.. ...+..+|..++..|.+......|..+-....++.|. +-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~--efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD--EFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH--HcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 344444 3456666666776666544333677777777777777 778888888888888777542
Q ss_pred ----CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 231 ----GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 231 ----~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.+-+-+.+++++|...|+.| |..++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~P--d~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMP--DKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHhccccH
Confidence 23467888899999999855 88888888888887664
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.0023 Score=59.63 Aligned_cols=86 Identities=13% Similarity=0.026 Sum_probs=40.7
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
..|++++|...|+++.+ .-+-+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455555555555544 12223444444444555555555555555444 2233 33444444445555555555555
Q ss_pred HHHHHHhcCC
Q 011587 410 VGKILLQLQP 419 (482)
Q Consensus 410 ~~~~~~~~~~ 419 (482)
.|+++++.+|
T Consensus 92 ~~~~al~l~P 101 (356)
T PLN03088 92 ALEKGASLAP 101 (356)
T ss_pred HHHHHHHhCC
Confidence 5555555544
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.48 E-value=0.0012 Score=61.53 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
...+...|++++|++.|++. ...| +...|..+..+|...|++++|...++++++..| .+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--------SLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHH
Confidence 45667889999999999988 4455 677888888999999999999999999999999 7889999999999
Q ss_pred HhCCCchHHHHHHHHhHhcC
Q 011587 441 ASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~~ 460 (482)
...|++++|...+++..+.+
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999998876443
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0032 Score=56.59 Aligned_cols=142 Identities=13% Similarity=0.015 Sum_probs=102.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHH-HHcCCChHHHHHHHHhccC---CCHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM-YSKCGCLDNALLIFSRMRE---KNVLTWTAMAT 293 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 293 (482)
.+|..+++..-+.+..+.|..+|.++++.+ ..+..+|...... |...++.+.|..+|+...+ .+...|..-+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 467888888888888999999999998654 4456666666665 3335677779999998875 57778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNA---VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+. -|+......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHHHh
Confidence 889999999999999998876 33322 47888888888899999999999998883 33333444444433
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.46 E-value=0.0005 Score=46.88 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC-CchHHHHHHHHhHhc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE-RWPDVESVRKQMKVK 459 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 459 (482)
+..+|..+...+...|++++|+..|+++++.+| .+...|..+..++.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 466788888999999999999999999999999 78899999999999999 799999999887643
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.44 E-value=0.015 Score=46.03 Aligned_cols=94 Identities=7% Similarity=-0.054 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
.....+...+...|++++|.++|+.+.. | +..-|-.|..++-..|++.+|+..|.......+ -++..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344555556666777777777766653 2 444556666666666777777777776666553 35566666666677
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 011587 332 HAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~ 349 (482)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766664
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00045 Score=46.41 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+...+...|++++|...|+++++..| .+...+..+..++.+.|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999 789999999999999999999999999987543
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.42 E-value=0.0026 Score=52.59 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=36.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
+..+...+...|++++|...|++. ...|+ ...+..+...+.+.|++++|...++++++..+ .+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~ 109 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSAL 109 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHH
Confidence 344444444445555554444443 11111 23444445555555555555555555555554 344444
Q ss_pred HHHHHHHHhCCC
Q 011587 434 VALSNIYASAER 445 (482)
Q Consensus 434 ~~l~~~~~~~g~ 445 (482)
..+..++...|+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 444555544443
No 172
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.094 Score=47.57 Aligned_cols=286 Identities=16% Similarity=0.107 Sum_probs=185.1
Q ss_pred HHHHHHHHHHh--CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH----
Q 011587 146 VATTLIHFYAS--NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT---- 219 (482)
Q Consensus 146 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~---- 219 (482)
.|.+|-.++.. .||-..|.++-.+-.+-=..--..||+.+..+.....|+++.|.+-|+.|. -|+.|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-------~dPEtRllG 156 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-------DDPETRLLG 156 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-------cChHHHHHh
Confidence 46666666544 466667766655543322233445666555443344799999999999996 23333
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHH--HHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLT--WTAMA 292 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~--~~~li 292 (482)
+..|.-...+.|..+.|..+-+..-..- +.-...+.+.+...|..|+++.|+++.+.-.+ +++.- --.|+
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLL 233 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLL 233 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Confidence 3344444467888888888887776655 44566778899999999999999999986553 44321 11222
Q ss_pred HHH---HhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc
Q 011587 293 TGM---AIHGKGNEAIRLLDSMRDCGVKPNAVT-FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368 (482)
Q Consensus 293 ~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (482)
.+- .-..+...|...-.+..+ ..|+..- -..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+
T Consensus 234 tAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar 306 (531)
T COG3898 234 TAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RAR 306 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--Hhc
Confidence 211 112345555554444433 3555432 233456788999999999999999874 56666554433 446
Q ss_pred cCCHHHH----HHHHHcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh-
Q 011587 369 AGHLEEA----YNFIMGIPIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS- 442 (482)
Q Consensus 369 ~g~~~~A----~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 442 (482)
.|+.... .+-++.| +| +....-.+..+....|++..|..-.+...+..| ....|..|.+.-..
T Consensus 307 ~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p---------res~~lLlAdIeeAe 375 (531)
T COG3898 307 SGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP---------RESAYLLLADIEEAE 375 (531)
T ss_pred CCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc---------hhhHHHHHHHHHhhc
Confidence 6653322 1223333 44 566677778888889999999988887777665 67888888887665
Q ss_pred CCCchHHHHHHHHhHhc
Q 011587 443 AERWPDVESVRKQMKVK 459 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~ 459 (482)
.|+-.++...+-+-.+.
T Consensus 376 tGDqg~vR~wlAqav~A 392 (531)
T COG3898 376 TGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCchHHHHHHHHHHhcC
Confidence 49999999998877643
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0024 Score=52.66 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=78.0
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
.+...+..+.+..+..-....|..+...+...|++++|+..|++. .+.|+ ..++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444322233334556777778888889999999888877 33332 3478888888999999999999999
Q ss_pred HHHhcCCCcccccccCCchhHHHHHHHHH-------hCCCchHHHHHHHHh
Q 011587 413 ILLQLQPEVTFVDVACTSEDFVALSNIYA-------SAERWPDVESVRKQM 456 (482)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~m 456 (482)
++.+..+ ....++..+...+. +.|++++|...+++-
T Consensus 97 ~Al~~~~--------~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 97 QALERNP--------FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhCc--------CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999877 55667777777777 788888666655543
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.37 E-value=0.053 Score=43.82 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC------CCCCCHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI------PIKPDAI 389 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~p~~~ 389 (482)
+.|+...-..|..+....|+..+|...|++...- -+--|....-.+.++....+++..|...+++. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 4677777777888888999999999999998882 44567778888888888889999998888876 223443
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.-.+.+.+...|....|+..|+.+...-| +..........+.++|+.+++..-+..+.
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp---------g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP---------GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC---------CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33466778888999999999998888766 45555556677788887777766544443
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.37 E-value=0.04 Score=48.27 Aligned_cols=183 Identities=9% Similarity=-0.007 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH-H---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV-L---TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 326 (482)
+...+......+...|++++|.+.|+++.. |+. . ..-.++.+|.+.+++++|...+++..+....-...-|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333344455556667888888888888764 322 1 1234556777888888888888888775332222233333
Q ss_pred HHHHhc--c---------------Cc---HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC
Q 011587 327 FAACCH--A---------------GL---VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 327 l~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 386 (482)
+.+.+. . .+ ...|...|+.+.+ -|=...-..+|..-+..+..+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH
Confidence 333321 1 11 1234444444444 2222233344443333331011
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
-..-+ .+.+.|.+.|.+..|..-++.+++.-|+ ..........++.+|.+.|..++|......+.
T Consensus 175 a~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 AKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPD-----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCC-----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11111 3455688899999999999999998773 12455667788899999999999988776553
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.36 E-value=0.012 Score=57.59 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHhc--C---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHhHHh
Q 011587 283 KNVLTWTAMATGMAIH--G---KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA--------GLVEEGLHLFDNMKSK 349 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~ 349 (482)
.+...|...+.+.... + ....|..+|++..+.... ....|..+..++... .+...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 4667777777764332 2 266888888888876322 234444433333211 1233444444443331
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+.+...|..+.-.....|++++|...+++. .+.|+...|..+...+...|+.++|...++++.+++|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 123445577777766667789999999999988 6778888999999999999999999999999999988
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.0061 Score=50.38 Aligned_cols=88 Identities=9% Similarity=-0.080 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
..+..+...+.. .|++++|+..|++.. .....+. ...+..+...+.+.|++++|...+.+..+.. +.+
T Consensus 36 ~~~~~lg~~~~~-----~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 105 (172)
T PRK02603 36 FVYYRDGMSAQA-----DGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQ 105 (172)
T ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccc
Confidence 344445555555 666666666666554 2221111 2455566666666666666666666666654 344
Q ss_pred hhHHHHHHHHHHcCCChHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A 273 (482)
...+..+...|...|+...+
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHHHHHHHHcCChHhH
Confidence 55555556666655554433
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0087 Score=52.34 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=74.1
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNV---HGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
+-|...|-.|...|...|+.+.|..-|.+. .+.| +...+..+..++.. ..+..++..+|+++++.++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-------- 224 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-------- 224 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--------
Confidence 556777888888888888888887777766 3333 45555555555432 2345567778888888887
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcc
Q 011587 428 CTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGS 467 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 467 (482)
.|..+...|...+...|++.+|...|+.|.+..-..+|..
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 6777777788888888888888888888877666555543
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.27 E-value=0.0064 Score=50.05 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
..|..+...+...|++++|...|++.......| ...++..+...+...|++++|...++...+. .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 344555555666666666666666665442221 1235555666666666666666666666652 222333444444
Q ss_pred HHHh
Q 011587 364 DLLG 367 (482)
Q Consensus 364 ~~~~ 367 (482)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.25 E-value=0.00058 Score=46.35 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=49.1
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
...|++++|.+.|+++.+..| .+...+..++.+|.+.|++++|..+++++....-
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 468999999999999999999 7899999999999999999999999998875543
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.001 Score=57.60 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=76.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
+.+.+++.+|...|.+.++ -.+-|..-|..-..+|.+.|.++.|++-.+.. .+.| -..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 5677899999999999998 45567888888899999999999998888776 6666 456899999999999999999
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
.+.|+++++.+|
T Consensus 169 ~~aykKaLeldP 180 (304)
T KOG0553|consen 169 IEAYKKALELDP 180 (304)
T ss_pred HHHHHhhhccCC
Confidence 999999999988
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.22 E-value=0.015 Score=49.54 Aligned_cols=188 Identities=10% Similarity=0.026 Sum_probs=92.7
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSL 326 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 326 (482)
+....-.....+...|++.+|.+.|+.+.. | -..+.-.++.++.+.|++++|...++++.+.-..-...-+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344444555566667777777777777663 2 1234455666777777777777777777654221111122222
Q ss_pred HHHHhccCcHHHHHHHHHHhHHh-cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHh
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSK-WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
+.+.+.-....... ....+ ....--...+..++.-|=......+|...+..+.-..-..-+ .+...|.+.|.+.
T Consensus 84 ~~g~~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~-~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL-YIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHCTT-HH
T ss_pred HHHHHHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcccHH
Confidence 22222111111110 00000 000001224444555555555555665554444101111111 1456688899999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
.|..-++.+++.-|+- .........++.+|.+.|..+.+.
T Consensus 159 aA~~r~~~v~~~yp~t-----~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDT-----PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTS-----HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCC-----chHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999887731 112345567888888888877544
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.17 Score=46.19 Aligned_cols=292 Identities=12% Similarity=0.070 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChh-hHHHHHHHhhhccC
Q 011587 43 AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF-TYVFALGSCARFCS 121 (482)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~~ll~~~~~~~~ 121 (482)
+..+......+ |+.+.|..+++.=+.+.. --..++.-|..+.| +.+..+.| |+. +|..++..-....
T Consensus 3 ~a~IA~~A~~~---GR~~LA~~LL~~Ep~~~~-qVplLL~m~e~e~A---L~kAi~Sg----D~DLi~~vLl~L~~~l~- 70 (319)
T PF04840_consen 3 YAEIARKAYEE---GRPKLATKLLELEPRASK-QVPLLLKMGEDELA---LNKAIESG----DTDLIYLVLLHLKRKLS- 70 (319)
T ss_pred HHHHHHHHHHc---ChHHHHHHHHHcCCChHH-HHHHHhcCCchHHH---HHHHHHcC----CccHHHHHHHHHHHhCC-
Confidence 44555566667 999999999886554322 22334443555555 55666666 333 4555554322222
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCC-cccccchHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS-KKAKDCAFNAL 200 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~a~ 200 (482)
.. +++. ++.. .|.. ..+...|++..+.+.-.++|.+-.+........+-.++.... .........|.
T Consensus 71 ---~s---~f~~-il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~ 138 (319)
T PF04840_consen 71 ---LS---QFFK-ILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQ 138 (319)
T ss_pred ---HH---HHHH-HHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 21 2333 2222 2222 334556667667777666665433222122222222221100 00011223334
Q ss_pred HHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 011587 201 VLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK----TFYMPENDVFIGTALVDMYSKCGCLDNALLI 276 (482)
Q Consensus 201 ~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (482)
+.|.... +......++. +-.++++.-.+ .+. .....+.+.-+.-+...|+...|.++
T Consensus 139 ~~y~~~k--------~~~f~~~~~e---------~q~~Ll~~Q~~Le~~~~~--~f~~~Sl~~Ti~~li~~~~~k~A~kl 199 (319)
T PF04840_consen 139 KLYSKSK--------NDAFEAKLIE---------EQIKLLEYQKELEEKYNT--NFVGLSLNDTIRKLIEMGQEKQAEKL 199 (319)
T ss_pred HHHHhcc--------hhHHHHHHHH---------HHHHHHHHHHHHHHHhcc--chhcCCHHHHHHHHHHCCCHHHHHHH
Confidence 4443332 1111111111 11122221111 111 11122334456667788999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH
Q 011587 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356 (482)
Q Consensus 277 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (482)
-.+..-|+..-|-..+.+++..++|++...+-.. . -++.-|..++.+|.+.|+..+|..+..++..
T Consensus 200 ~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-------- 265 (319)
T PF04840_consen 200 KKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEASKYIPKIPD-------- 265 (319)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHHHHHHhCCh--------
Confidence 9999889999999999999999999988876432 1 1447788999999999999999888777321
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSA 397 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 397 (482)
..-+..|.++|++.+|.+.-.+.+ |...+..+...
T Consensus 266 ---~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 266 ---EERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred ---HHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 445788899999999987766643 45444444433
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.27 Score=48.08 Aligned_cols=231 Identities=13% Similarity=0.051 Sum_probs=111.9
Q ss_pred CCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CCChh--------h----HHHHhcC--CCCccHHHHHHHHHHCCC
Q 011587 37 KSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PPNLF--------L----FNTLIRC--TPPQDSVLVFAYWVSKGL 101 (482)
Q Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~--------~----~~~ll~~--~~~~~a~~~~~~m~~~~~ 101 (482)
.|.+..+..+..+.... -+++.|+..|=+.. -+.+. . -.+-+.+ |.+++|.++|-+|.++++
T Consensus 689 nPHprLWrllAe~Al~K---l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK---LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHH---HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 46677777777777666 67777777775543 12110 0 0111222 777777777776655431
Q ss_pred CCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHH
Q 011587 102 LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF--MFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWN 179 (482)
Q Consensus 102 ~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 179 (482)
.+....+.| + +-.+.++++.--. +. ..-..+++.+...++....|++|.+.+..... . .
T Consensus 766 ----------Aielr~klg-D--wfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--~---e 826 (1189)
T KOG2041|consen 766 ----------AIELRKKLG-D--WFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--T---E 826 (1189)
T ss_pred ----------hHHHHHhhh-h--HHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--h---H
Confidence 233344444 4 5544444332100 00 00123556666666666666666666654321 1 1
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
..+.++.+ ..++++...+-+.+ +-|....-.+...+.+.|.-++|.+.+- +.+. | .+
T Consensus 827 ~~~ecly~-----le~f~~LE~la~~L-------pe~s~llp~~a~mf~svGMC~qAV~a~L---r~s~-p-------ka 883 (1189)
T KOG2041|consen 827 NQIECLYR-----LELFGELEVLARTL-------PEDSELLPVMADMFTSVGMCDQAVEAYL---RRSL-P-------KA 883 (1189)
T ss_pred hHHHHHHH-----HHhhhhHHHHHHhc-------CcccchHHHHHHHHHhhchHHHHHHHHH---hccC-c-------HH
Confidence 23344444 44444444333333 2233344455556666666555554432 2221 1 23
Q ss_pred HHHHHHcCCChHHHHHHHHhccCCCHHHHHH--------------HHHHHHhcCChHHHHHHHHHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTA--------------MATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~~~m~ 312 (482)
.+..|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|..-.|.+++.+|-
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 4455556666666666665554443322111 1233445555555555555553
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.062 Score=43.45 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=56.4
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTW 288 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 288 (482)
.|+...-..|.++....|+..+|...|++....-+ ..|..+...+.++....++...|...++++.+ .+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f--A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIF--AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc--CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45555455556666666666666666666655555 44566666666666666666666666665543 122233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
-.+...|...|++.+|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34445555566666666666665554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.017 Score=43.98 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT--DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.|+.++|+.+|++.. ..|.... ...+..+.+.+...|++++|..+++........++.+......+..++...|+.
T Consensus 14 ~G~~~~Ai~~Y~~Al--~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 14 LGREEEAIPLYRRAL--AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred cCCHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 455555555555554 4443332 223444445555555555555555555443210011222222223344444555
Q ss_pred HHHHHHHHhccCCCHHHHHH
Q 011587 271 DNALLIFSRMREKNVLTWTA 290 (482)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~ 290 (482)
++|.+.+-....++...|..
T Consensus 92 ~eAl~~~l~~la~~~~~y~r 111 (120)
T PF12688_consen 92 KEALEWLLEALAETLPRYRR 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555444433333333333
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.006 Score=53.07 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=83.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE 373 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 373 (482)
-+.+.+++.+|+..|.+.++... -|++.|..=..+|++.|.++.|.+-.+....- -+-....|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 46678999999999999999753 37888888899999999999999988887762 2334678999999999999999
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHH
Q 011587 374 EAYNFIMGI-PIKPDAILWRSLLSA 397 (482)
Q Consensus 374 ~A~~~~~~~-~~~p~~~~~~~l~~~ 397 (482)
+|.+.|++. .+.|+-.+|-.=+..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999988 888987777544433
No 188
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.2 Score=45.72 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNV 400 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 400 (482)
.+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++-.++... +..+.-|...+.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34455555666677776666664443 33 6777888888888888888877766543 2344667777888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 401 HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
.|...+|..+..+ . ++ ..-+..|.++|+|.+|.+.
T Consensus 250 ~~~~~eA~~yI~k-----~--------~~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPK-----I--------PD----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHh-----C--------Ch----HHHHHHHHHCCCHHHHHHH
Confidence 8888888777765 2 11 3456677788888877664
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.0027 Score=43.02 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=30.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWR 392 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 392 (482)
+.|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 345556666666665552 2334555555555666666666666666555 3344433333
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.034 Score=54.46 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILW 391 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 391 (482)
+...|..+.-.+...|++++|...++++... .|+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 4455665555555567788888887777763 356777777777777788888887777665 445544444
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.015 Score=52.54 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcCC---C-----CCCH
Q 011587 322 TFTSLFAACCHA-GLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGIP---I-----KPDA 388 (482)
Q Consensus 322 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 388 (482)
.+..+...|... |+++.|.+.|++..+-+.-... ..++..+...+.+.|++++|.++|++.+ . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 7888888888887763211111 3456677788889999999999998761 1 1122
Q ss_pred H-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC--CCchHHHHHHHHh
Q 011587 389 I-LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA--ERWPDVESVRKQM 456 (482)
Q Consensus 389 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m 456 (482)
. .|-..+-++...||...|.+.+++.....|.-. + .........|+.++-.. ..++++..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~--~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA--S-SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST--T-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC--C-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2 222233355667899999999999888766210 0 11233444566665542 3344555444443
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.04 E-value=0.27 Score=45.65 Aligned_cols=413 Identities=10% Similarity=0.063 Sum_probs=222.3
Q ss_pred cCcchHHHHHHHHHHhcCCC----C-chHHHHHHHHHhcCCCCCChHHHHHHhhcCCCC-ChhhHHHHhcC------CCC
Q 011587 19 TTPSHIKQIHAQLITNALKS----P-PLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP-NLFLFNTLIRC------TPP 86 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~----~-~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ll~~------~~~ 86 (482)
++..++..|+....+.--.. . ....+.++++|.. .+.+.....+....+. ....|-.+..+ +.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 88999999998887653222 1 4456888889887 5777777666655421 12334444444 999
Q ss_pred ccHHHHHHHHHHC--CCCCC-----------ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCC----CCchhHHHH
Q 011587 87 QDSVLVFAYWVSK--GLLTF-----------DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGF----MFNVLVATT 149 (482)
Q Consensus 87 ~~a~~~~~~m~~~--~~~p~-----------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 149 (482)
++|++.+....+. +-.|+ |-.-=+..+..+...| . +.+++.+++++...=+ ..+..+|+.
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~--f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-R--FSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-C--cchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 9999999888765 33331 1222245566677777 7 9999999998876533 478888988
Q ss_pred HHHHHHhCC--------ChhHHHHHh-------ccCCCCCch----------hHHHHHHHHhcCCcccccchHHHHHHHH
Q 011587 150 LIHFYASNK--------DISSGKKVF-------DQMPMRSSA----------TWNAMINGYCSQSKKAKDCAFNALVLFR 204 (482)
Q Consensus 150 l~~~~~~~g--------~~~~A~~~~-------~~~~~~~~~----------~~~~li~~~~~~~~~~~~~~~~a~~~~~ 204 (482)
++-++.+.= ..+-+.+.+ ++|..-+.. ...+++....--. ..+..--+++++
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p---~e~l~~~mq~l~ 249 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVP---KERLPPLMQILE 249 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCC---HhhccHHHHHHH
Confidence 666665431 111112222 111111111 1112222111100 122222333444
Q ss_pred HhhhccCCCCcCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 205 DMLVDVSGVKPTDT-TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP--ENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 205 ~m~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
... ..-+.|+.. ....+...+.+ +.+++..+-+.+......| ..-..+|..++....+.++...|.+.+.-+.
T Consensus 250 ~We--~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 250 NWE--NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHH--hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 443 344555543 23344444443 4455555554444332200 1123455666666666777766666665443
Q ss_pred --CCCHHHHH-------HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HhccCc-HHHHHHHHH
Q 011587 282 --EKNVLTWT-------AMATGMAI----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA---CCHAGL-VEEGLHLFD 344 (482)
Q Consensus 282 --~~~~~~~~-------~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~-~~~a~~~~~ 344 (482)
+|+...-. .+-+..+. .-+..+-+.+|+......+. .......|+.+ +=+.|. -++|.++++
T Consensus 326 ~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 326 ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 33222111 11111121 11223334455555444332 11112222222 223344 778888888
Q ss_pred HhHHhcCCCcCHHHHHHHH----HHHhcc---CCHH---HHHHHHHcCCCCC----CHHHHHHHHHH--HHhcCCHhHHH
Q 011587 345 NMKSKWGVEPHIKHYSCIV----DLLGRA---GHLE---EAYNFIMGIPIKP----DAILWRSLLSA--CNVHGDVALGE 408 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~ 408 (482)
.+.+- -+-|..+-|.+. .+|... ..+. +-..+.++.|+.| +...-|.|..| +..+|++.++.
T Consensus 405 ~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 88762 122333333222 222221 1122 2234455557776 34455666665 46789999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
-.-..+.+..| ++.+|..+.-.+....++++|..++.++.
T Consensus 483 ~ys~WL~~iaP---------S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP---------SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC---------cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888887665 88999999999999999999999998764
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.04 E-value=0.021 Score=43.43 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=65.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CcCHHHHHHHHHHHh
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPN--AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV-EPHIKHYSCIVDLLG 367 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~ 367 (482)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++....+.- +.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888887775543 234555667777888888888888887764211 002223333445667
Q ss_pred ccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 011587 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACN 399 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 399 (482)
..|+.++|++.+-.. +.++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~-la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA-LAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 778888887776543 1123334444444443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.14 Score=44.76 Aligned_cols=173 Identities=13% Similarity=0.079 Sum_probs=105.4
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH---HHHHHHHHcCCChHHHHHHHHhccC--C--CHHHHHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG---TALVDMYSKCGCLDNALLIFSRMRE--K--NVLTWTAMA 292 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li 292 (482)
+-.....+...|++++|.+.|+.+.... |.+.... -.++.+|.+.+++++|...+++..+ | ....|...+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3334455567899999999999998876 3333333 4567888999999999999998874 2 122333333
Q ss_pred HHHHh--cC---------------Ch---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 293 TGMAI--HG---------------KG---NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 293 ~~~~~--~~---------------~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
.+.+. .+ +. .+|...|+. ++.-|=.+.-.++|...+..+..+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHHHHHHH---
Confidence 33321 11 11 223334444 444444444455666555555442
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-----PIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
-...--.+..-|.+.|.+..|..=++.+ +.+........++.+|...|..++|.++...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0112224566788888888776666665 222345566777888888898888888776543
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.00 E-value=0.0026 Score=42.63 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345667777777777777777 4445 556667777777777888888888877777766
No 196
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.98 E-value=0.014 Score=44.92 Aligned_cols=81 Identities=10% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSM---------------RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m---------------~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
.++..+|.++++.|+.+....+++.. ......|+..+..+++.+|+..+++..|.++++...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34444555555555555555554433 122345778888888888888888888888888888878
Q ss_pred CCCcCHHHHHHHHHHH
Q 011587 351 GVEPHIKHYSCIVDLL 366 (482)
Q Consensus 351 ~~~~~~~~~~~li~~~ 366 (482)
+++.+..+|..|++-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8777778888777644
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.94 E-value=0.0033 Score=50.42 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-----hcCCccC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-----VKRVETE 464 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~ 464 (482)
+...++..+...|+++.|..+++.++..+| -+...|..++.+|.+.|+..+|.+.++++. +.|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--------YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 455567778889999999999999999999 899999999999999999999999998875 5688887
Q ss_pred Ccc
Q 011587 465 PGS 467 (482)
Q Consensus 465 ~~~ 467 (482)
+.+
T Consensus 136 ~~~ 138 (146)
T PF03704_consen 136 PET 138 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.029 Score=51.06 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=83.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCcCHHHH------------
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA--ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHY------------ 359 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 359 (482)
++...|++++|...--..++.... + .+..++. ++.-.++.+.+...|++..+ ..|+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 455566777666655554443211 1 1222222 22335566666666666654 23332211
Q ss_pred -HHHHHHHhccCCHHHHHHHHHcC-CC-----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 360 -SCIVDLLGRAGHLEEAYNFIMGI-PI-----KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 360 -~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
..=..-..+.|++.+|.+.+.+. ++ +|+...|.....+..+.|+.++|..-.+++...++ .-...
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~--------syika 323 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS--------SYIKA 323 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH--------HHHHH
Confidence 11122334567777777777665 33 33445555555566677777777777777777666 34444
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 433 FVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
|..-.+++.-.++|++|.+-+++..+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555556667777776666655433
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0038 Score=42.99 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=53.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..|.+.+++++|.++++++++.+| .+...+.....++.+.|++++|...++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 567899999999999999999999 7899999999999999999999999999886554
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.92 E-value=0.35 Score=44.92 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHH-HHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILW-RSLLSA 397 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 397 (482)
..|...+.+..+...++.|..+|-++.+. + +.+++..+++++..++. |+...|.++|+-- ..-||...| +..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44666777777777888899999998885 6 66788888888887765 6777888888754 334555444 556666
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCC--chhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACT--SEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+...++-+.|..+|+..++.-. .+ ...|..++..-..-|+...+..+-+.|.
T Consensus 476 Li~inde~naraLFetsv~r~~--------~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLE--------KTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHH--------HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7788888889889886655333 22 5678888888888888877766655554
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.049 Score=46.57 Aligned_cols=139 Identities=12% Similarity=0.079 Sum_probs=90.7
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC---CCc
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP---END 253 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~ 253 (482)
..+.++..+.- .+.+.-.+..+++.. +...+-++.....+++...+.|+.+.|...++...+..-.- ...
T Consensus 179 Vmy~~~~~llG-----~kEy~iS~d~~~~vi--~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 179 VMYSMANCLLG-----MKEYVLSVDAYHSVI--KYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHhc-----chhhhhhHHHHHHHH--HhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 34556666666 777777788888877 54545567777788888888888888888888766533200 223
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
..+.......|.-.+++..|...|.++.. .|...-|.-.-+..-.|+..+|++.++.|... .|...+-+
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 33333444556667778888888877764 34555555555556677888888888888775 34444433
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.91 E-value=0.32 Score=44.34 Aligned_cols=311 Identities=12% Similarity=0.018 Sum_probs=193.8
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHH--HhCCChh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY--ASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~ 161 (482)
..+..+...|..-++. ..|-.+-..+.-.| -|+-..|.++-.+..+. +..|..-.-.|+..- .-.|+++
T Consensus 67 ~sP~t~~Ryfr~rKRd-------rgyqALStGliAag-AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~ 137 (531)
T COG3898 67 ESPYTARRYFRERKRD-------RGYQALSTGLIAAG-AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYE 137 (531)
T ss_pred hCcHHHHHHHHHHHhh-------hHHHHHhhhhhhhc-cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchH
Confidence 4555666666666542 34556666666666 55577887776665432 244545455555443 3469999
Q ss_pred HHHHHhccCCC-CCc--hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHH
Q 011587 162 SGKKVFDQMPM-RSS--ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGA 237 (482)
Q Consensus 162 ~A~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 237 (482)
.|.+-|+.|.. |.. .-...|.-.-.+ .|..+.|.+.-++.- +.-| -.......+...+..|+|+.|.
T Consensus 138 ~Ar~kfeAMl~dPEtRllGLRgLyleAqr-----~GareaAr~yAe~Aa----~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 138 DARKKFEAMLDDPETRLLGLRGLYLEAQR-----LGAREAARHYAERAA----EKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred HHHHHHHHHhcChHHHHHhHHHHHHHHHh-----cccHHHHHHHHHHHH----hhccCCchHHHHHHHHHHhcCChHHHH
Confidence 99999999974 211 112233333344 777777777776653 3344 3567888899999999999999
Q ss_pred HHHHHHHHhCCCCCCchh--HHHHHHHHHH---cCCChHHHHHHHHhcc--CCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 011587 238 CVHGYMEKTFYMPENDVF--IGTALVDMYS---KCGCLDNALLIFSRMR--EKNVL-TWTAMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 238 ~~~~~~~~~~~~p~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~~~--~~~~~-~~~~li~~~~~~~~~~~a~~~~~ 309 (482)
++.+.-....+. +++.. .-..|+.+-. -.-+...|...-.+.. .||.. .--.-..++.+.|+..++-.+++
T Consensus 209 kLvd~~~~~~vi-e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 209 KLVDAQRAAKVI-EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 999987765542 22222 1122222211 1224455555544443 24433 23334567899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD 387 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 387 (482)
.+-+....|+.. .+..+.+.|+ .+..-+++..+--.++| +..+--.+.++-...|++..|..--+.. ...|.
T Consensus 288 ~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 288 TAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 998886666532 2223445554 34444444433223333 4566677778888889998887666655 55788
Q ss_pred HHHHHHHHHHH-HhcCCHhHHHHHHHHHHhcCC
Q 011587 388 AILWRSLLSAC-NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 388 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|-.|...- ...||-.++..++.+.++.-.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 88888887764 456999999999999887543
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.87 E-value=0.15 Score=47.11 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCC-------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREK-------NVLTWTAMATGMAI---HGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
..++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 45555677777788888887777653 12222233445556 788888888888866555667777877776
Q ss_pred HHHhc---------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC-HH---HHHHHH---Hc----CC---C
Q 011587 328 AACCH---------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH-LE---EAYNFI---MG----IP---I 384 (482)
Q Consensus 328 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~----~~---~ 384 (482)
..|-. ....++|...|.+.-+ +.|+..+--.++..+...|. .+ +..++- .. -+ -
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 2236677777665543 34554332222222333332 11 222222 11 11 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..+-..+.+++.++.-.|+.++|.+..+++.+..+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 24566678888899999999999999999999877
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.86 E-value=0.0038 Score=42.39 Aligned_cols=61 Identities=16% Similarity=-0.031 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhc
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRM 280 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~ 280 (482)
..+|..+...+...|++++|...|++.++.. +.+...+..+..+|.+.| ++++|++.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4455666666666666666666666666665 556666666666666666 566666666554
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.18 Score=43.33 Aligned_cols=133 Identities=12% Similarity=0.005 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH---
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI--- 362 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 362 (482)
.+.+.++..+.-.|.+.-.+..+++.++...+.++.....|.+.-.+.||.+.|...|++..+. .-..+....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 4566777777778889999999999999876778888889999999999999999999987764 323333333333
Q ss_pred --HHHHhccCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 363 --VDLLGRAGHLEEAYNFIMGIP--IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 363 --i~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|.-.+++..|...+.++. -..|+...|.-.-+..-.|+...|.+..+.+.+..|
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344566778889999998872 123555555544455567999999999999999887
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.67 E-value=0.019 Score=50.67 Aligned_cols=86 Identities=10% Similarity=0.007 Sum_probs=37.9
Q ss_pred hccCCHHHHHHHHHcC-CCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 367 GRAGHLEEAYNFIMGI-PIKPDA----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
.+.|++++|...|+.. ...|+. ..+-.+..+|...|++++|...|+.+++..|+- ......+..++..+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s-----~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS-----PKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----cchhHHHHHHHHHHH
Confidence 3344555555554444 222221 233334444555555555555555555444410 012223333344444
Q ss_pred hCCCchHHHHHHHHhH
Q 011587 442 SAERWPDVESVRKQMK 457 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~ 457 (482)
..|++++|...++++.
T Consensus 229 ~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 229 DKGDTAKAKAVYQQVI 244 (263)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.17 Score=49.06 Aligned_cols=49 Identities=6% Similarity=-0.033 Sum_probs=29.5
Q ss_pred HHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHH
Q 011587 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVS 98 (482)
Q Consensus 30 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~ 98 (482)
.+.+.|-.|+.. ++...|+-. |.+.+|-++|.+. |.-.+|+++|..|+-
T Consensus 625 ~~k~rge~P~~i---LlA~~~Ay~---gKF~EAAklFk~~--------------G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 625 ERKKRGETPNDL---LLADVFAYQ---GKFHEAAKLFKRS--------------GHENRALEMYTDLRM 673 (1081)
T ss_pred HHHhcCCCchHH---HHHHHHHhh---hhHHHHHHHHHHc--------------CchhhHHHHHHHHHH
Confidence 344456555543 334444545 7788888887765 555667777766653
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.25 Score=45.34 Aligned_cols=162 Identities=12% Similarity=-0.068 Sum_probs=97.8
Q ss_pred cCHHHHHHHH-HHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH-------
Q 011587 215 PTDTTMVCVL-SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL------- 286 (482)
Q Consensus 215 p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------- 286 (482)
|.-.++..+- .++.-.++.+.|.++-...++.. +.+......-..++--.++.+.|...|++...-+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 3334444333 44567788888888877777766 334433333333444567888899988888752221
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC
Q 011587 287 --------TWTAMATGMAIHGKGNEAIRLLDSMRDC---GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH 355 (482)
Q Consensus 287 --------~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 355 (482)
.+..=..-..+.|++..|.+.+.+.+.. ++.|+...|........+.|+..+|+.--++..+- .+.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHH
Confidence 1222223345678888888888887653 34556666666667777788888888777776651 111
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 356 -IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 356 -~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...|..-..++.-.++|++|.+-++..
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222234445567777777777765
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.037 Score=44.28 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCcCHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS----KWGVEPHIKHY 359 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 359 (482)
.+...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+...|.++|+++.+ ..|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345556666777788888888888777764 33677777888888888888888777777653 24777776543
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.11 Score=45.69 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=50.6
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHG---KGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
|.|...|-.|..+|...|+.+.|..-|.+..+ ++...+..+..++..+. ...++..+|+++...... |..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 44555566666666666666666666655543 34444444444332221 234555566665554322 444444
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHH
Q 011587 325 SLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 325 ~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 455555556666666666666655
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.35 Score=41.12 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=93.2
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC--HHHHHHHHHHH
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN--VLTWTAMATGM 295 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~ 295 (482)
+-.....+...|++.+|.+.|+.+.......+........++.++.+.|+++.|...+++..+ |+ ...+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 334445566788999999999999887532234455566788889999999999999988764 22 12222222222
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVK---PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+......... ....... --...|..++.-|=.+.-..+|...+..+... =...--.+..-|.+.|.+
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTT-H
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccH
Confidence 2111111110 0000000 01123444555555555566666655555542 011222355667788888
Q ss_pred HHHHHHHHcC-CCCC----CHHHHHHHHHHHHhcCCHhHHH
Q 011587 373 EEAYNFIMGI-PIKP----DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
..|..-++.+ .--| .....-.++.+|.+.|..+.+.
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8776666655 1112 2234566677777777766443
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.45 E-value=0.0054 Score=42.90 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC-chhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT-SEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
..+++.+...|...|++++|+..|+++++.....+ +-.|+ ..++..+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--DDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35788889999999999999999999987621110 00122 6678899999999999999999998765
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.45 E-value=0.27 Score=37.41 Aligned_cols=141 Identities=11% Similarity=0.136 Sum_probs=86.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
+.-.|..++..+++.+..... +..-||.+|.-....-+-+-..++++..-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 345677777778777776542 4556666666555555555555565555542211 24556666
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
....+-.++ .+...+...+..+..+|+-+.-.+++.++.+.+. +++.....+..+|.+.|+..++.+++.
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~--------~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEE--------INPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-------------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccC--------CCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 666665554 2445556677788889999999999998887665 788899999999999999999999999
Q ss_pred HhHhcCCc
Q 011587 455 QMKVKRVE 462 (482)
Q Consensus 455 ~m~~~~~~ 462 (482)
+.-++|++
T Consensus 145 ~ACekG~k 152 (161)
T PF09205_consen 145 EACEKGLK 152 (161)
T ss_dssp HHHHTT-H
T ss_pred HHHHhchH
Confidence 98888874
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.43 E-value=0.28 Score=45.32 Aligned_cols=166 Identities=12% Similarity=0.063 Sum_probs=106.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCG---VKPNAVTFTSLFAACCH---AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
.++-+|....+++..+++.+.|...- +.-....-....-++.+ .|+.++|.+++..+... .-.++..+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556889999999999999998751 11122222234445566 89999999999996653 6678888888887
Q ss_pred HHHh----c-----cCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCC-Hh---HHHHHH----HHHHhcCCCccccc
Q 011587 364 DLLG----R-----AGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGD-VA---LGEKVG----KILLQLQPEVTFVD 425 (482)
Q Consensus 364 ~~~~----~-----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~~~~~~~~~ 425 (482)
..|- . ....++|...|.+. .+.|+..+=-.+...+...|. ++ +..++- ....+.+. .+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~----~~ 300 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS----LE 300 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc----cc
Confidence 7663 2 22477888888877 555654432222222222332 22 223333 22223332 11
Q ss_pred ccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
-..+..-+.+++.++.-.|++++|.+..++|.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 12566777799999999999999999999998664
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.43 E-value=0.055 Score=47.82 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC----CHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP----DAILWRSL 394 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l 394 (482)
..|...+..+.+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...| ....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455444444556778888888887777421110 0245566777777788888887777776 2222 23344445
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+...|+.+.|...++.+++..|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5566678888888888888888776
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.40 E-value=0.038 Score=42.52 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHH--------------hcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKS--------------KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-- 382 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 382 (482)
|..++..++.++++.|+++....+++..-. .....|+..+..+++.+|+..|++..|+++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 467889999999999999999888865321 1234578899999999999999999998888766
Q ss_pred --CCCCCHHHHHHHHHHHHhc
Q 011587 383 --PIKPDAILWRSLLSACNVH 401 (482)
Q Consensus 383 --~~~p~~~~~~~l~~~~~~~ 401 (482)
+++-+..+|..|+.-+...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 7666788898888765443
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.33 E-value=0.026 Score=51.29 Aligned_cols=261 Identities=13% Similarity=0.019 Sum_probs=144.2
Q ss_pred ccchHHHHHHHHHhhhccCCCCc---CHHHHHHHHHHhhccCchHHHHHHHHHHH--H--hCCCCCCchhHHHHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP---TDTTMVCVLSVSSQLGLLEFGACVHGYME--K--TFYMPENDVFIGTALVDMYS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~p~~~~~~~~~li~~~~ 265 (482)
.|+....+.+|+... +.|-.. =..+|..|.++|.-.+++++|.++...=+ . .|-. .........|.+.+-
T Consensus 30 ~gdcraGv~ff~aA~--qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk-lGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAAL--QVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK-LGEAKSSGNLGNTLK 106 (639)
T ss_pred ccchhhhHHHHHHHH--HhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch-hccccccccccchhh
Confidence 566666666666655 433211 12345556666666667777666543211 1 1100 112223334555555
Q ss_pred cCCChHHHHHHHHhccC---------CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHH----H
Q 011587 266 KCGCLDNALLIFSRMRE---------KNVLTWTAMATGMAIHGK--------------------GNEAIRLLDSM----R 312 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m----~ 312 (482)
-.|.+++|.-.-.+-.. ....++..+...|...|+ ++.|.++|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666544332221 112233334444443332 23344444321 1
Q ss_pred hCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhH---HhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-----
Q 011587 313 DCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMK---SKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI----- 382 (482)
Q Consensus 313 ~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~----- 382 (482)
+.|-. .-...|..|-..|.-.|+++.|+...+.-. +.+|-... ...+..+..++.-.|+++.|.+.|+..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 12210 122345566666666788998877655422 22343322 346777888888999999998887654
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 383 --PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 383 --~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
|-+ ......-+|...|.-..++++|+.++.+-+..-.+. .+..-....+.+|..+|...|..++|+...+.-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 311 234455567788888889999998887755422210 01124577889999999999999999987766543
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.32 E-value=0.0075 Score=42.14 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-------C-CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-------P-IKPD-AILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.+++.+...|...|++++|++.|++. | -.|+ ..++..+...+...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666666777777666666554 1 1122 44566666677777777777777776654
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.27 E-value=0.99 Score=42.09 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
.+|...+....+..-.+.|..+|-+..+.| +.++...+++++..++. |+...|.++|+--... ++-+..--+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 367777888888888999999999999998 67888999999998765 8889999999987773 3334444455667
Q ss_pred HHhccCCHHHHHHHHHcC--CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 365 LLGRAGHLEEAYNFIMGI--PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
-+...++-+.|..+|+.. .+..+ ...|..+|.--..-|+...+..+-+++.+.-|
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 778899999999999966 33333 56899999988999999999888888887766
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=1.6 Score=43.54 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 315 GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 315 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
|......+.+--+.-+...|+..+|.++-.+.+- |+-..|-.-+.+++..+++++-+++-+.+. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3334445555566666777888888888666643 788888888999999999999888888763 24446667
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHH
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVR 453 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (482)
+.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l------------~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL------------Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh------------H----HHHHHHHHhccHHHHHHHH
Confidence 88899999999998887643211 1 5677888999988887653
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.14 E-value=0.058 Score=43.01 Aligned_cols=85 Identities=8% Similarity=-0.048 Sum_probs=44.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...|++++|..+|.-+..- + .-+..-+..|..++-..+++++|...|... -+ .-|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 33556666666666666551 2 223444555555555666666666666544 00 11222233344555666666666
Q ss_pred HHHHHHHHh
Q 011587 408 EKVGKILLQ 416 (482)
Q Consensus 408 ~~~~~~~~~ 416 (482)
...|+.++.
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666555
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.12 E-value=0.028 Score=38.58 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..|.+.+++++|.++++.+ ...| +...+......+.+.|++++|...++.+.+..|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567778888888888777 4444 555666677777788888888888888887776
No 223
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.89 E-value=0.069 Score=46.15 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=85.8
Q ss_pred HHHHhccCC--CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC---------
Q 011587 163 GKKVFDQMP--MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG--------- 231 (482)
Q Consensus 163 A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~--------- 231 (482)
.++.|.... ++|-.+|-+.+..+....-...+.++-....++.|. +-|+.-|..+|+.|++.+=+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~--eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK--EYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--HhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 455666665 567788888887776632222567777788888998 8999999999999999886543
Q ss_pred -------chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHHhcc
Q 011587 232 -------LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL-DNALLIFSRMR 281 (482)
Q Consensus 232 -------~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 281 (482)
+-+-+.+++++|..+|++| |..+-..|++++.+.+-. .+..++.-.|.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmP--dkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMP--DKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCC--chHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3356789999999999965 999999999999988853 34444444444
No 224
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.87 E-value=2.4 Score=43.03 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHH
Q 011587 145 LVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVL 224 (482)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~ 224 (482)
..-...+..+.+.+++.....++..- ..+...-.....+... .|+.++|....+.+- ..| ...+..+..++
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~-----~G~~~~A~~~a~~lW--~~g-~~~p~~cd~l~ 170 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWA-----TGQQQEAWQGAKELW--LTG-KSLPNACDKLF 170 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHh--ccC-CCCChHHHHHH
Confidence 33444555666777777777744232 2344444455566666 666666655555553 222 22234444444
Q ss_pred HHhhccC
Q 011587 225 SVSSQLG 231 (482)
Q Consensus 225 ~~~~~~~ 231 (482)
+.+.+.|
T Consensus 171 ~~~~~~g 177 (644)
T PRK11619 171 SVWQQSG 177 (644)
T ss_pred HHHHHcC
Confidence 4444333
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.84 E-value=0.053 Score=50.70 Aligned_cols=101 Identities=9% Similarity=0.041 Sum_probs=74.9
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI----LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
+.+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|...++++++...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn-------- 143 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN-------- 143 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--------
Confidence 345778899999999999999999999986 7788743 588899999999999999999999999744
Q ss_pred CCchhHHHHHH--HHHhCCCchHHHHHHHHhHhcCCccC
Q 011587 428 CTSEDFVALSN--IYASAERWPDVESVRKQMKVKRVETE 464 (482)
Q Consensus 428 ~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~~~ 464 (482)
+. |..+.. .+....+.++..++++...+-|..-.
T Consensus 144 ~~---f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 144 LK---FSTILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred hh---HHHHHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 32 221111 12233345577788888887776433
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.83 E-value=0.73 Score=44.83 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPN-----AVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIK 357 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 357 (482)
+..+++...-.|+-+.+++.+.+..+. ++.-. .-.|..++..++. ..+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 334445555556666666666655442 22211 1223334433332 45788899999999985 35554
Q ss_pred HHHH-HHHHHhccCCHHHHHHHHHcCC-CC-----CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 358 HYSC-IVDLLGRAGHLEEAYNFIMGIP-IK-----PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 358 ~~~~-li~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
.|.. -.+.+...|++++|.+.|++.. .+ .....+--+...+...+++++|...|.++.+... .+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--------WSk 339 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--------WSK 339 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--------cHH
Confidence 4433 3456677899999999999751 11 1233444566677888999999999999999877 677
Q ss_pred hhHHHHHHH-HHhCCCc-------hHHHHHHHHhHh
Q 011587 431 EDFVALSNI-YASAERW-------PDVESVRKQMKV 458 (482)
Q Consensus 431 ~~~~~l~~~-~~~~g~~-------~~a~~~~~~m~~ 458 (482)
.+|..+.-+ +...|+. ++|..++.+...
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777655544 4467877 888888888763
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.67 E-value=0.033 Score=33.70 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS 437 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 437 (482)
.++..+..+|...|++++|+++++++++..| .|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P--------~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP--------DDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------CCHHHHHHhh
Confidence 3577788999999999999999999999999 6777776664
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.66 E-value=0.15 Score=44.22 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=80.6
Q ss_pred HHHHHHHhcc--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------
Q 011587 272 NALLIFSRMR--EKNVLTWTAMATGMAIH-----GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG---------- 334 (482)
Q Consensus 272 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------- 334 (482)
..++.|.... +.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445555555 56777888887777543 567777888889999999999999999998876532
Q ss_pred ------cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHH-HHHHHH
Q 011587 335 ------LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLE-EAYNFI 379 (482)
Q Consensus 335 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~ 379 (482)
+-+-+.+++++|.. +|+-||..+-..|+.++.+.+..- +..+++
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 34557899999998 799999999999999999887643 334433
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.54 E-value=0.33 Score=45.62 Aligned_cols=100 Identities=11% Similarity=-0.102 Sum_probs=70.0
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCch---hHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDV---FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTA 290 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 290 (482)
+.+...++.+..++...|++++|...|++.++.. +.+. ..|..+..+|...|++++|++.+++..+-+...|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~ 148 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFST 148 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHH
Confidence 3467789999999999999999999999999887 4444 458999999999999999999999987642222321
Q ss_pred HHH--HHHhcCChHHHHHHHHHHHhCCC
Q 011587 291 MAT--GMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 291 li~--~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
+.. .+....+..+..++++.+.+.|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 01111223355556665555543
No 230
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.39 E-value=2.9 Score=40.66 Aligned_cols=391 Identities=13% Similarity=0.064 Sum_probs=221.1
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcC-------CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRC-------TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~-------~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
...+.++.+++.+...=+..|.-..+. |..+.+.++|++-++. +.- +...|...+..+.... |+.+...
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~-SvdlW~~Y~~f~~n~~--~d~~~lr 134 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPL-SVDLWLSYLAFLKNNN--GDPETLR 134 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhh-HHHHHHHHHHHHhccC--CCHHHHH
Confidence 455667777777664333444433333 8889999999998873 333 6666766666655533 4477788
Q ss_pred HHHHHHHHh-CCC-CchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCC---c-ccccchHHHHHHH
Q 011587 130 QIHVHVTKR-GFM-FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQS---K-KAKDCAFNALVLF 203 (482)
Q Consensus 130 ~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~-~~~~~~~~a~~~~ 203 (482)
..|+..... |.. .+...|...|..-...+++.....+++++.+-....|+.....|.+.- . ......+++.++-
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 888887764 432 245678888888888889999999998887644444444433332200 0 0011222222222
Q ss_pred HHhhhc--cCCCCcCHHHHHHHHHHhhc-cCchHHHH------------------------HHHHHHHHhC---CCC--C
Q 011587 204 RDMLVD--VSGVKPTDTTMVCVLSVSSQ-LGLLEFGA------------------------CVHGYMEKTF---YMP--E 251 (482)
Q Consensus 204 ~~m~~~--~~~~~p~~~~~~~l~~~~~~-~~~~~~a~------------------------~~~~~~~~~~---~~p--~ 251 (482)
.....+ ..-..+.......-++-... .+..+.+. ..++.-.+.. +.| +
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 111100 00000111111111111110 11111111 1111111111 011 2
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV--KPNAVTFTSL 326 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l 326 (482)
.+..+|..-+.--.+.|+.+.+.-+|++...| -...|-..+.-....|+.+-|..++....+--+ .|....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667888888889999999999999998765 334555555555566898888888877655433 2333333333
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHH-HHHHHHHHHhccCCHHHHH---HHHHcC-CCCCCHHHHHHHHHH----
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIK-HYSCIVDLLGRAGHLEEAY---NFIMGI-PIKPDAILWRSLLSA---- 397 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~---- 397 (482)
+. -..|+.+.|..+++.+.++ + |+.. .-..-+....+.|..+.+. +++... ..+-+..+...+.--
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 32 3468999999999999984 3 5432 2233344556778888877 454444 112222222222222
Q ss_pred -HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc---hHHHHHHHHhHhcCCccC
Q 011587 398 -CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW---PDVESVRKQMKVKRVETE 464 (482)
Q Consensus 398 -~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~ 464 (482)
+.-.++.+.|..++.++.+..+ ++...|..+++.....+.. +--.-++..+.+..+.++
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~--------~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILP--------DCKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCC--------ccHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccc
Confidence 3446899999999999999999 8999999999988776633 222334444444444333
No 231
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.35 E-value=0.017 Score=32.66 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=30.2
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHH
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (482)
|+++++.+| .+...|..+..+|...|++++|++
T Consensus 2 y~kAie~~P--------~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNP--------NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCC--------CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999 899999999999999999999863
No 232
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.33 E-value=3.5 Score=43.50 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
.|.-.++.--+.|.+++|+.++.--.+.-...|.+...-+.....+++|.-.|+..-+ ....+.+|..+|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3444555555666666666665543333344555555566667778888777766422 2245677788888
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
+.+|..+..++.. +-.--..+-..|+.-+...+++-+|-+++.+..-.|.. .+..+++...+++|.++.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 8888888777765 22222333366777778888888888887777433322 2233445555666665554433
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.38 Score=44.15 Aligned_cols=93 Identities=11% Similarity=0.038 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.++..+.-+|.+.+++.+|++...+. .. ++|....--=..++...|+++.|+..|+++++..| .|...-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P--------~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP--------SNKAARA 329 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC--------CcHHHHH
Confidence 46677888889999999998887766 33 34666665567788889999999999999999999 6777777
Q ss_pred HHHHHHHhCCCchHH-HHHHHHhH
Q 011587 435 ALSNIYASAERWPDV-ESVRKQMK 457 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a-~~~~~~m~ 457 (482)
-|+..-.+...+.+. .++|..|-
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777666655544 56777775
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.29 E-value=0.7 Score=41.76 Aligned_cols=223 Identities=13% Similarity=0.069 Sum_probs=133.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc-------CC--CHHHHHHHHHHHHhcCC
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR-------EK--NVLTWTAMATGMAIHGK 300 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~~~ 300 (482)
..+.+.+...+.+.+..-........++..+..+.++.|.+++++..--... +. -..+|..+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444433211001233455666777888888887765432221 11 12456666677766667
Q ss_pred hHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc-----CHHHHHHHHHHHhccCC
Q 011587 301 GNEAIRLLDSMRD-CGVKP---NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP-----HIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 301 ~~~a~~~~~~m~~-~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~ 371 (482)
+.+++.+-..-.. .|..| ......++-.++...+.++++.+.|+...+- --.. ....+..|...|.+..+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHHHHHh
Confidence 7777766554333 23322 1233445667788888999999999887762 2111 23578889999999999
Q ss_pred HHHHHHHHHcC-------CCCCCHHHHHH-----HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 372 LEEAYNFIMGI-------PIKPDAILWRS-----LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 372 ~~~A~~~~~~~-------~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
.++|.-+..+. ++.--...|.. |.-++...|....|.+..++..+.....+ +-.........+.+.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDI 255 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADI 255 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHH
Confidence 99886554433 44332333333 34467788999999999998877544211 001223344588899
Q ss_pred HHhCCCchHHHHHHHH
Q 011587 440 YASAERWPDVESVRKQ 455 (482)
Q Consensus 440 ~~~~g~~~~a~~~~~~ 455 (482)
|...|+.|.|..-+++
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 9999998888776665
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=0.2 Score=43.52 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC---HHHHHHHHHHHhccCCHHHHHHHHHcC----CCCC-CHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH---IKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKP-DAILWRS 393 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 393 (482)
.|+.-+..+ +.|++..|..-|....+ +++-+ ...+-.|.+++...|+.++|...|..+ +-.| -+..+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455444433 44556666666666666 23222 223444566666666666666665554 2222 2244444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|.....+.|+.++|...|+++.+.-|
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 55555666666666666666666655
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.15 E-value=0.98 Score=43.38 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.++++.+.+..+.-.- ...++ ..-.+.++..+.+.|..+.|.++. .|.. .-.+...+.|+++.
T Consensus 274 ~~d~~~v~~~i~~~~l-l~~i~--~~~~~~i~~fL~~~G~~e~AL~~~-----------~D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNL-LPNIP--KDQGQSIARFLEKKGYPELALQFV-----------TDPD---HRFELALQLGNLDI 336 (443)
T ss_dssp TT-HHH-----HHHHT-GGG----HHHHHHHHHHHHHTT-HHHHHHHS-----------S-HH---HHHHHHHHCT-HHH
T ss_pred cCChhhhhhhhhhhhh-cccCC--hhHHHHHHHHHHHCCCHHHHHhhc-----------CChH---HHhHHHHhcCCHHH
Confidence 7778887776652110 11222 445778888889999999888773 3432 34556778999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 273 ALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 273 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+....+ |
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~- 403 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G- 403 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c-
Confidence 998877665 566999999999999999999999998653 445666677788988888888777763 3
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPD 387 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 387 (482)
-++....++.-.|+.++..+++.+.+..|-
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~~~~~~~ 433 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIETGRLPE 433 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT-HHH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHHcCCchH
Confidence 245556666777999999999988764443
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.15 E-value=0.13 Score=41.03 Aligned_cols=85 Identities=7% Similarity=-0.052 Sum_probs=53.4
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc---CCCHHHHHHHHHHHHhcCChH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR---EKNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 302 (482)
-+...|++++|+.+|..+...+ +.+..-+..|..++-..+++++|...|.... ..|..++-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3445677777777777766655 4455556666666666677777776665432 234445555666666667777
Q ss_pred HHHHHHHHHHh
Q 011587 303 EAIRLLDSMRD 313 (482)
Q Consensus 303 ~a~~~~~~m~~ 313 (482)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77776666655
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.01 E-value=0.29 Score=44.83 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCC-CCCH
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---------KNVLTWTAMATGMAIHGKGNEAIRLLDSMR----DCGV-KPNA 320 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~-~p~~ 320 (482)
..|..|.+.|.-.|+++.|+..-+.-.+ ..-.++..+..++.-.|+++.|.+.|+.-. +.|- ...+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566777777788888888776543321 133567778888888899999988887653 2222 2344
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHh---c-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSK---W-GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
.+..+|...|.-..++++|+.++.+-..- . ...-....+-+|..+|...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55666777777778888888877764431 0 1112355777888888888888888766543
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=4.3 Score=40.59 Aligned_cols=300 Identities=11% Similarity=0.034 Sum_probs=178.7
Q ss_pred hCCCCchhHHH-----HHHHHHHhCCChhHHHHHhccCCCCC---chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc
Q 011587 138 RGFMFNVLVAT-----TLIHFYASNKDISSGKKVFDQMPMRS---SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD 209 (482)
Q Consensus 138 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~ 209 (482)
-|++.+..-|. .+++-+...+.+..|.++-..+..|. ...|.....-+.+... ..+.+-+..+-+++.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d--~~d~~vld~I~~kls-- 501 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSD--KMDEEVLDKIDEKLS-- 501 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccC--ccchHHHHHHHHHhc--
Confidence 46777766664 45667778899999999988887664 4556666666666331 223333333333332
Q ss_pred cCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC-CC-CCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-C--
Q 011587 210 VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY-MP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-N-- 284 (482)
Q Consensus 210 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-- 284 (482)
... -...+|..+.+-....|+.+.|..+++.=...+. .| -.+..-+...+.-..+.||.+....++-.+.+. +
T Consensus 502 -~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 502 -AKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred -ccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 222 3445677777777788999998888764222111 00 002223345566667778877777776666531 1
Q ss_pred ------------HHHHHHHHH--------HHHhcCChHHHHHHHH--HHHhC-CCCCCHHHHHHHHHHHhccCc------
Q 011587 285 ------------VLTWTAMAT--------GMAIHGKGNEAIRLLD--SMRDC-GVKPNAVTFTSLFAACCHAGL------ 335 (482)
Q Consensus 285 ------------~~~~~~li~--------~~~~~~~~~~a~~~~~--~m~~~-g~~p~~~~~~~ll~~~~~~~~------ 335 (482)
...|.-++. .+.+.++-.++..-|. ..... -+.+-.........+|++...
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHH
Confidence 112222221 1111222222222221 10000 011111222333344444332
Q ss_pred ----HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 011587 336 ----VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVG 411 (482)
Q Consensus 336 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 411 (482)
..+-.++.+.+..++|......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 233445555566656665666677777788889999999999999987 478889988899999999998877766
Q ss_pred HHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.. .++.-|.-...+|.+.|+.++|.+++-+..
T Consensus 739 ksk-------------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 739 KSK-------------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hcc-------------CCCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 532 225667789999999999999999887654
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.94 E-value=2.7 Score=41.03 Aligned_cols=161 Identities=16% Similarity=0.019 Sum_probs=97.4
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH-----HHHHHHHHHhhc----cCchHHHHHHHHHHHHhCC
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD-----TTMVCVLSVSSQ----LGLLEFGACVHGYMEKTFY 248 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 248 (482)
...++....- .|+-+.+++.+.+.. +..++.-.. -.|+.++..++. ..+.+.+.+++..+.+.-
T Consensus 191 ~~kll~~vGF-----~gdR~~GL~~L~~~~-~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y- 263 (468)
T PF10300_consen 191 VLKLLSFVGF-----SGDRELGLRLLWEAS-KSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY- 263 (468)
T ss_pred HHHHHhhcCc-----CCcHHHHHHHHHHHh-ccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-
Confidence 3445555555 778888888887765 133333322 234444444433 346677888888888775
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 011587 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321 (482)
Q Consensus 249 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 321 (482)
|......---...+...|++++|++.|++.... ....+--+.-++....+|++|.+.|..+.+.. .-+..
T Consensus 264 --P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka 340 (468)
T PF10300_consen 264 --PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKA 340 (468)
T ss_pred --CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHH
Confidence 444444444556677788888888888875531 22334445556677788888888888887753 22344
Q ss_pred HHHHHHH-HHhccCcH-------HHHHHHHHHhHH
Q 011587 322 TFTSLFA-ACCHAGLV-------EEGLHLFDNMKS 348 (482)
Q Consensus 322 ~~~~ll~-~~~~~~~~-------~~a~~~~~~~~~ 348 (482)
+|..+.. ++...++. ++|.++|.+...
T Consensus 341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4443433 23345655 677777776654
No 241
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.90 E-value=0.42 Score=43.11 Aligned_cols=143 Identities=11% Similarity=0.078 Sum_probs=77.3
Q ss_pred hhhHHHHHHHhccC-c----chHHHHHHHHHHhcCCCCchHHHHHHHHHhc---CCCCCChHHHHHHhhcCC-------C
Q 011587 7 HRCFALLKLKAITT-P----SHIKQIHAQLITNALKSPPLYAQLIQLYCTK---KASPQSTKIVHFVFTHFD-------P 71 (482)
Q Consensus 7 ~~~~~~~l~~~~~~-~----~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~~~~~-------~ 71 (482)
..+++.+|... +. + .....+++.|.+.|+..+..++-+....... ...+.....|.++++.|. .
T Consensus 60 ~~~la~~l~~~-~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 60 RFILAALLDIS-FEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 44556666655 44 4 4457889999999999887666443333333 111123445666666665 3
Q ss_pred CChhhHHHHhcC------CCCccHHHHHHHHHHCCCCCCChhh-HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCch
Q 011587 72 PNLFLFNTLIRC------TPPQDSVLVFAYWVSKGLLTFDDFT-YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNV 144 (482)
Q Consensus 72 ~~~~~~~~ll~~------~~~~~a~~~~~~m~~~~~~p~~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (482)
++-..+..++.. .-.+.+..+|+.+.+.|....|.-- ...++..+.... ......+.++++.+.+.|+++..
T Consensus 139 ~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~-~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 139 PEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD-QEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred ccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHcCCcccc
Confidence 344455555554 2234555666666666655534422 233333322222 32234566677777777766655
Q ss_pred hHHHHHH
Q 011587 145 LVATTLI 151 (482)
Q Consensus 145 ~~~~~l~ 151 (482)
..|..+.
T Consensus 218 ~~yp~lG 224 (297)
T PF13170_consen 218 MHYPTLG 224 (297)
T ss_pred ccccHHH
Confidence 5555433
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.82 E-value=2.9 Score=37.60 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhccCchH---HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLE---FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAM 291 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 291 (482)
.++..++.++...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|... ....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~---~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY---GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 45566667776666544 3444555554433 334555556666666677778887777777642 23444444
Q ss_pred HHHHH--hcCChHHHHHHHHHHHhCCCCCCH
Q 011587 292 ATGMA--IHGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 292 i~~~~--~~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
+..+- .......+...++.+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44431 123345566666666554444444
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.46 Score=43.62 Aligned_cols=87 Identities=14% Similarity=0.004 Sum_probs=49.3
Q ss_pred HHHHHcCCChHHHHHHHHhccC------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE------------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
.+.|.+.|++..|..-|++... .-..+++.+..+|.+.+++..|+..-++.+..+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567888888888888777542 012344555555555555555555555555543 224444
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
...=..+|...|+++.|+..|+++.+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44444555555555555555555554
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=2.4 Score=36.27 Aligned_cols=203 Identities=9% Similarity=0.043 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMP---MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTM 220 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 220 (482)
...|..-..+|-...++++|...+.+.. +.+...|.+ ...++.|.-+.++|. ...--..-|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA------------AKayEqaamLake~~----klsEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA------------AKAYEQAAMLAKELS----KLSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH------------HHHHHHHHHHHHHHH----HhHHHHHHH
Confidence 3456666677777888888887766543 122222221 222334444555543 111112234
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------C---CHHHHHHH
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------K---NVLTWTAM 291 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~l 291 (482)
.-....|...|.++.|-..+++.-+.- +.-+.++|+++|.+... . -...+...
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~l------------------env~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKAL------------------ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHh------------------hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 445566667777666666655543321 12234444444443321 1 11234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHh--cCCCcCHHHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDC----GVKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSK--WGVEPHIKHYSCIVD 364 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~ 364 (482)
-..+.+..++++|-..|.+-... .--|+. ..|...|-.+....++..|..+++.-.+- +.-+-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 55666777777766655543211 111222 23555555666777888888888884432 233445677788888
Q ss_pred HHhccCCHHHHHHHHHc
Q 011587 365 LLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~ 381 (482)
+|- .|+.+++.+++..
T Consensus 237 ayd-~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 237 AYD-EGDIEEIKKVLSS 252 (308)
T ss_pred Hhc-cCCHHHHHHHHcC
Confidence 775 4788887776543
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.72 E-value=0.87 Score=35.58 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHHHcCCChHHHHHHHHhccCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 261 VDMYSKCGCLDNALLIFSRMREK------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
.....+.|++++|.+.|+.+... ...+.-.++.+|.+.+++++|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33344455555555555555431 2233444555555555555555555555554
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=2.6 Score=36.12 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=105.1
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC--HHHHHHHHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN--VLTWTAMATGMA 296 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~ 296 (482)
.|.....+|...++++++..-+.+..+.. +.+...|.+ ...++.|..+.+++.+-+ +..|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y---EnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY---ENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH---HhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555667777788888877766665433 223332222 223455555666555432 234556666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----CCcCHHHHHHHHHHHhccCCH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG----VEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 372 (482)
..|.++-|-..+++.-+. ....++++|.++|++...-.. ...-...+...-..+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666654321 112334444444444333100 011122344445566666777
Q ss_pred HHHHHHHHcC-C------CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 373 EEAYNFIMGI-P------IKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 373 ~~A~~~~~~~-~------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
++|-..+.+- + --|+. ..|-..|-.+....|+..|++.++.-.+.+.--+ .-+..+...|+.+|- .|
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~----sed~r~lenLL~ayd-~g 241 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK----SEDSRSLENLLTAYD-EG 241 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC----hHHHHHHHHHHHHhc-cC
Confidence 7665544433 1 11221 2234444455566788888888877554322100 134556666666653 45
Q ss_pred CchHHHHHH
Q 011587 445 RWPDVESVR 453 (482)
Q Consensus 445 ~~~~a~~~~ 453 (482)
+.+++.+++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 666666543
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.59 E-value=1.8 Score=34.15 Aligned_cols=87 Identities=14% Similarity=-0.032 Sum_probs=52.3
Q ss_pred hHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhc
Q 011587 108 TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187 (482)
Q Consensus 108 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 187 (482)
....++..+...+ . ......+++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+.......++.|.+
T Consensus 9 ~~~~vv~~~~~~~-~--~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRN-L--LEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCC-c--HHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 3445666666555 6 777777888777765 356667778888877653 2344444442 1233334445566655
Q ss_pred CCcccccchHHHHHHHHHh
Q 011587 188 QSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m 206 (482)
.+.++++.-++.++
T Consensus 82 -----~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 -----AKLYEEAVELYKKD 95 (140)
T ss_pred -----cCcHHHHHHHHHhh
Confidence 66666666666655
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.54 E-value=2.2 Score=41.09 Aligned_cols=153 Identities=7% Similarity=-0.065 Sum_probs=93.2
Q ss_pred CCCccHHHHHH--HHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 84 TPPQDSVLVFA--YWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~--~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
++++.+.+..+ .+.. .+ ...-.+.+++.+-+.| . .+.|+++. .|+. .-.+...+.|+++
T Consensus 275 ~d~~~v~~~i~~~~ll~-~i---~~~~~~~i~~fL~~~G-~--~e~AL~~~---------~D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLP-NI---PKDQGQSIARFLEKKG-Y--PELALQFV---------TDPD---HRFELALQLGNLD 335 (443)
T ss_dssp T-HHH-----HHHHTGG-G-----HHHHHHHHHHHHHTT----HHHHHHHS---------S-HH---HHHHHHHHCT-HH
T ss_pred CChhhhhhhhhhhhhcc-cC---ChhHHHHHHHHHHHCC-C--HHHHHhhc---------CChH---HHhHHHHhcCCHH
Confidence 66666555543 1111 01 2334666666666666 6 77777652 2332 3455666788888
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHH
Q 011587 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241 (482)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (482)
.|.++.++.. +...|..|...... +|+++-|.+.|++.. -+..|+-.|...|+.+...++.+
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~-----~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALR-----QGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHH-----TTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHH-----cCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHH
Confidence 8888887776 66788888888888 888888988888875 35666667777888887777777
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
.....|. ++....++.-.|++++..+++.+..
T Consensus 398 ~a~~~~~--------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 398 IAEERGD--------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHTT---------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHccC--------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7766662 2344445555677777777665543
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=1 Score=40.24 Aligned_cols=149 Identities=7% Similarity=-0.032 Sum_probs=86.2
Q ss_pred HcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHH--HHHHHHhccCcHH
Q 011587 265 SKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV--TFT--SLFAACCHAGLVE 337 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~--~ll~~~~~~~~~~ 337 (482)
...|+..+|-..++++.+ .|..+++..=.+|...|+...-...+++.... ..|+.. +|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666776664 35666666667777777777777777776654 223332 222 2223344677777
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcCCHhHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP------DAILWRSLLSACNVHGDVALGEKVG 411 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~ 411 (482)
+|++.-++..+ -.+.|.-.-.++.+.+--.|++.++.+++.+-.-.- -...|-...-.+...+.++.|+.+|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777776665 223444555666666667777777777776651110 1111222222344557777777777
Q ss_pred HHHHh
Q 011587 412 KILLQ 416 (482)
Q Consensus 412 ~~~~~ 416 (482)
+.-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 76443
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.52 E-value=0.41 Score=41.63 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH-HHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVK--PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI-KHYSCIV 363 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li 363 (482)
.|+.-+..+ +.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.++-.|.. ..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 445566676666666655321 122334456666666677777777776666644333332 4555556
Q ss_pred HHHhccCCHHHHHHHHHcC
Q 011587 364 DLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~ 382 (482)
....+.|+.++|...|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6666666777776666665
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.46 E-value=1.7 Score=33.30 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (482)
...-+..+...|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-++ |++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 344556666777777777777776553 3556666667777777777777777777777764 553
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.41 E-value=5.9 Score=39.40 Aligned_cols=299 Identities=12% Similarity=0.083 Sum_probs=148.6
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCC---ChhhHHHHHHHhhhccCcchhhhHHHHHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTF---DDFTYVFALGSCARFCSLSTLWLGRQIHV 133 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~~ll~~~~~~~~~~~~~~a~~~~~ 133 (482)
|++++|++++-.+.++|... ..-+..|++-+..++++. -|.... -...++.+-..++... . +++|.+.+.
T Consensus 748 g~feeaek~yld~drrDLAi-elr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~-~--We~A~~yY~ 820 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLAI-ELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMM-E--WEEAAKYYS 820 (1189)
T ss_pred cchhHhhhhhhccchhhhhH-HHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHH-H--HHHHHHHHH
Confidence 88999999999998777532 112222555554444332 111110 1235666666777666 6 777777776
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCC
Q 011587 134 HVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGV 213 (482)
Q Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~ 213 (482)
.... ...++.++.+..++++-+.+-+.+++ +....-.+...+.+ .|.-++|++.|-+..
T Consensus 821 ~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~s-----vGMC~qAV~a~Lr~s------ 879 (1189)
T KOG2041|consen 821 YCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTS-----VGMCDQAVEAYLRRS------ 879 (1189)
T ss_pred hccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHh-----hchHHHHHHHHHhcc------
Confidence 5432 12356666666777776666666654 33344556666777 777777777665543
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhH--------------HHHHHHHHHcCCChHHHHHHHHh
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFI--------------GTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
.|. ..+..|...++|.+|.++-+... .| ...+ ..--|..+.+.|+.-+|-+++.+
T Consensus 880 ~pk-----aAv~tCv~LnQW~~avelaq~~~----l~--qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 880 LPK-----AAVHTCVELNQWGEAVELAQRFQ----LP--QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred CcH-----HHHHHHHHHHHHHHHHHHHHhcc----ch--hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence 121 23455566666666655433211 00 1110 01234556666776667677766
Q ss_pred ccCCCH---HHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 280 MREKNV---LTWTAMATGM----AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 280 ~~~~~~---~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
|.+... ..|-.+=..| .-..+..++++-.++....|...++.. +...+-..++.++.+..-. |
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g- 1018 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G- 1018 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h-
Confidence 653211 1111111111 111233444444454445554322221 1222333344444443332 1
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
....+|-.|.+-....|..+.|++.--.+ .+-|-...|+.+.-+.+....+.
T Consensus 1019 -AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1019 -AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred -HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 12233334444445567777776543322 44566666665554444333333
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.38 E-value=6.7 Score=41.57 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=70.7
Q ss_pred CCCHHHHHHHH----HHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHH--
Q 011587 317 KPNAVTFTSLF----AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL-- 390 (482)
Q Consensus 317 ~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-- 390 (482)
.|+...+..+. ..+...+.+++|.-.|+..-+- .--+.+|..+|+|.+|+.+..++....+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~ 1001 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEGKDELVIL 1001 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHH
Confidence 45555554444 4444566777777776665441 2246788889999999999988854444433
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
-..|+.-+...++.-+|-++..+....-. -.+..|++...|++|.++-..
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd~~---------------~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSDPE---------------EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcCHH---------------HHHHHHhhHhHHHHHHHHHHh
Confidence 25677778888888888888776654221 223344555566666655433
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.27 E-value=0.34 Score=36.77 Aligned_cols=88 Identities=17% Similarity=0.072 Sum_probs=63.7
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHH---HHHHHHHHHHhc
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAI---LWRSLLSACNVH 401 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~~~l~~~~~~~ 401 (482)
+.+..|+.+.|++.|.+... -.+.....||.-..++.-.|+.++|++-+++. |-+ +.. .|..=...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 45677888888888888877 45567778888888888888888888777766 322 222 232233346677
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 011587 402 GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~ 419 (482)
|+-+.|..-|+.+-++|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888888887
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.18 E-value=0.53 Score=35.79 Aligned_cols=89 Identities=17% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHH---HHHHHHHHHhc
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK---HYSCIVDLLGR 368 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 368 (482)
.-+.+..|+.+.|++.|.+.... .+-....||.-.+++.-.|+.++|.+-+++..+-.|-. +.. .|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHH
Confidence 34678899999999999998886 34478899999999999999999999999998853433 322 33334456778
Q ss_pred cCCHHHHHHHHHcC
Q 011587 369 AGHLEEAYNFIMGI 382 (482)
Q Consensus 369 ~g~~~~A~~~~~~~ 382 (482)
.|+.+.|..-|+..
T Consensus 128 ~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 128 LGNDDAARADFEAA 141 (175)
T ss_pred hCchHHHHHhHHHH
Confidence 89999998888766
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.12 E-value=3.3 Score=35.37 Aligned_cols=219 Identities=18% Similarity=0.085 Sum_probs=156.4
Q ss_pred chHHHHHHHHHhhhccCCCC-cCHHHHHHHHHHhhccCchHHHHHHHHHHHHh-CCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 195 CAFNALVLFRDMLVDVSGVK-PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-FYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 195 ~~~~a~~~~~~m~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
....+...+.... ..... .....+......+...+....+...+...... .. ......+......+...+++..
T Consensus 38 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 38 ELAEALELLEEAL--ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL--PNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred hHHHHHHHHHHHH--hcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHHHhhHHH
Confidence 3444555555543 21111 13567777788888889999888888887763 22 5567777888888888999999
Q ss_pred HHHHHHhccC--CCH-HHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 273 ALLIFSRMRE--KNV-LTWTAMAT-GMAIHGKGNEAIRLLDSMRDCGV--KPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 273 A~~~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+...+..... ++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999998875 222 23333333 78899999999999999865321 123344444455567789999999999999
Q ss_pred HHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 347 KSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 347 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.. ..+. ....+..+...+...++.+.|...+... ...|+ ...+..+...+...+..+.+...+.+.....+
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 98 3344 4678888889999999999999998887 44554 44555555555577789999999999999887
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.09 E-value=2.3 Score=33.49 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR 368 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 368 (482)
..++..+...+.+.....+++.+...+. .+...++.++..|++.+. .+....+.. . .+.......+..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 4456666666777777777777776653 466677777777776533 333333331 1 122233445666677
Q ss_pred cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 369 AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVH-GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 369 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
.+.++++.-++.++|.. ...+..+... ++++.|.+.+.+ . .++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~--------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----Q--------NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----C--------CCHHHHHHHHHHHHc
Confidence 77777777777777532 1122223333 677777776663 1 244566666655543
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.07 E-value=0.31 Score=43.06 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh-----cCCc
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV-----KRVE 462 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~ 462 (482)
..++..++..+...|+++.+...+++.....| -+...|..++.+|.+.|+...|+..++++.+ .|+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~ 224 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID 224 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC
Confidence 34556677778888888888888888888888 7888888888888888888888888887763 5666
Q ss_pred cCCc
Q 011587 463 TEPG 466 (482)
Q Consensus 463 ~~~~ 466 (482)
|.+.
T Consensus 225 P~~~ 228 (280)
T COG3629 225 PAPE 228 (280)
T ss_pred ccHH
Confidence 5553
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.95 E-value=4.3 Score=38.73 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCC-C-CCC--HHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP-I-KPD--AILWRSLLS 396 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~ 396 (482)
..=..+..++-+.|+.++|.+.+.++.+.+...-+......|+.++...+...++..++.+.. + -|. ...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 333446666667888888888888887742222244566778888888888888888887762 2 132 344555443
Q ss_pred HHHhcCC---------------HhHHHHHHHHHHhcCCC
Q 011587 397 ACNVHGD---------------VALGEKVGKILLQLQPE 420 (482)
Q Consensus 397 ~~~~~g~---------------~~~a~~~~~~~~~~~~~ 420 (482)
.+...++ -..|.+.++++.+.+|.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3222222 12356778888888775
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.91 E-value=1.5 Score=34.23 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=28.8
Q ss_pred hccCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGI----PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.|++++|.+.|+.+ +..| ....--.++.+|.+.+++++|...+++.++++|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3445666666666555 1111 223334455566666666666666666666666
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=3.3 Score=41.98 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMA 296 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 296 (482)
..+...-++...+...++.|..+-+ ..+..+..-........+.+.+.|++++|...|-+...--..+ .+|.-|.
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfL 408 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFL 408 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhc
Confidence 3445566677777777777666543 3333112223344555666778899999988887765422112 2455566
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
...+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+...+ |.. ..-....+..+.+.+-.++|.
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHH
Confidence 667778888888999988876 555566799999999999888777666653 322 112345567777888888888
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 377 NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 377 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
.+-.+.+. +......+ +-..+++++|.+.++.+
T Consensus 484 ~LA~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 87777653 33333333 34578899999888743
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.73 E-value=4.2 Score=35.24 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.+-|.+.|.+..|..-++++++.-++ ..-....+-.+.++|.+.|-.++|.+.-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345677888888888888888887551 11223445566778888888888877654443
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.41 E-value=6.4 Score=36.75 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 386 PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 386 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
....+|..+.+.+.+.|.++.|...+.++...++... ...+.....-++.+...|+.++|...+++.....+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3556788888999999999999999999888664210 02456666778888899999999999888876333
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.23 E-value=2.4 Score=38.54 Aligned_cols=125 Identities=12% Similarity=0.036 Sum_probs=56.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHHHH-
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCG-----VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHYSC- 361 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~- 361 (482)
+..++.-.+.++++++.|+....-- .......|..|-..|.+..|.++|.-+..+..+- .++.--...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555555666666666543210 1112234555666666666666655444433321 121111112221
Q ss_pred ----HHHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 362 ----IVDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 362 ----li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
+.-++...|++-.|.+..++. |-++ .......+...|...|+.+.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222344444444444443332 3222 22233444555666666666666555544
No 265
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.11 E-value=0.031 Score=44.49 Aligned_cols=86 Identities=8% Similarity=-0.087 Sum_probs=64.3
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCc
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSK 190 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 190 (482)
.++..+.+.+ . +.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+
T Consensus 12 ~vi~~~~~~~-~--~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~--- 82 (143)
T PF00637_consen 12 EVISAFEERN-Q--PEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEK--- 82 (143)
T ss_dssp CCHHHCTTTT----GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHT---
T ss_pred HHHHHHHhCC-C--HHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHh---
Confidence 3566677666 6 888889999999876566788899999999999998999999985433 333456666777
Q ss_pred ccccchHHHHHHHHHhh
Q 011587 191 KAKDCAFNALVLFRDML 207 (482)
Q Consensus 191 ~~~~~~~~a~~~~~~m~ 207 (482)
.+.++++.-+|.++.
T Consensus 83 --~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 83 --HGLYEEAVYLYSKLG 97 (143)
T ss_dssp --TTSHHHHHHHHHCCT
T ss_pred --cchHHHHHHHHHHcc
Confidence 777888888877764
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=2.1 Score=43.26 Aligned_cols=181 Identities=12% Similarity=0.019 Sum_probs=111.8
Q ss_pred cCHHHHHHHHH----HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHH
Q 011587 215 PTDTTMVCVLS----VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLT 287 (482)
Q Consensus 215 p~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 287 (482)
.|..+...++. -+.+.|++++|..-|-+-...- + . .-++.-|....++..-..+++.+.+ .+...
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l---e-~----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh 433 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL---E-P----SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH 433 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC---C-h----HHHHHHhcCHHHHHHHHHHHHHHHHcccccchh
Confidence 34444444444 4457899998887665543322 1 2 2355566666666666777777765 35556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
-..|+.+|.+.++.++..++.+.-. .|.. ..-....+..+.+.+-.++|..+-..... +..... -.+-
T Consensus 434 ttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~---ille 501 (933)
T KOG2114|consen 434 TTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK------HEWVLD---ILLE 501 (933)
T ss_pred HHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHH---HHHH
Confidence 6789999999999999988887765 3322 11244566777777777887776444333 232333 3345
Q ss_pred ccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 368 RAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
..+++++|++.++.+++.--..+.+...+-+.. ...++-..++-+...
T Consensus 502 ~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLPISELLRTLNKYGKILLE-HDPEETMKILIELIT 549 (933)
T ss_pred HhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHh
Confidence 678999999999999644344444444444444 345555555544443
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=1.3 Score=39.68 Aligned_cols=163 Identities=13% Similarity=0.042 Sum_probs=121.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHH----HHHHHHhccCCH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS----CIVDLLGRAGHL 372 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~ 372 (482)
-.|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468899999999999887 455778888888899999999999999998887 3445543333 334455689999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
++|++.-++. .+.| |...-.++...+-..|+.+++.++..+-...-... --.-...|....-.+...+.++.|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999887 5555 67777888888889999999998887654432210 0022455667777788889999999
Q ss_pred HHHHHhHhcCCccCCc
Q 011587 451 SVRKQMKVKRVETEPG 466 (482)
Q Consensus 451 ~~~~~m~~~~~~~~~~ 466 (482)
++|+.=.-+.+..+.+
T Consensus 268 eIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 268 EIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHhhccch
Confidence 9998766555555555
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=6.3 Score=34.97 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=106.2
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
...+++++...+....--.-.......|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+..+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 4455555555442222222233456788899999988888776433 3455566888888999999999999887763 1
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
-.........-|..+.+.....+...+-++..-.| |...--.+...+...|+.+.|.+.+=.+++.+.. ..|.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~------~~d~ 272 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG------FEDG 272 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc------ccCc
Confidence 11112222233444445444444444444443345 6666677778888899999998877777765441 1566
Q ss_pred hhHHHHHHHHHhCCCchHH
Q 011587 431 EDFVALSNIYASAERWPDV 449 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a 449 (482)
..-..++..+.-.|.-+.+
T Consensus 273 ~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 273 EARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHHHHhcCCCCHH
Confidence 7777888888877755443
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.82 E-value=2.4 Score=38.32 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=83.1
Q ss_pred hhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh--C----CChhHHHHHhccCCC-------
Q 011587 106 DFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--N----KDISSGKKVFDQMPM------- 172 (482)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~------- 172 (482)
..++.+++..-.... ...+++...+++.+.+.|+.-+..+|-+..-.... . ....+|..+|+.|.+
T Consensus 60 ~~~la~~l~~~~~~p-~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs 138 (297)
T PF13170_consen 60 RFILAALLDISFEDP-EEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS 138 (297)
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC
Confidence 334444444433312 23366677888888888887777666553333322 1 234567788888874
Q ss_pred CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHH--HHHHHHHHhhccCc--hHHHHHHHHHHHHhCC
Q 011587 173 RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDT--TMVCVLSVSSQLGL--LEFGACVHGYMEKTFY 248 (482)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 248 (482)
++-.++..++..-.. ......+.+..+|+.+. ..|+..+.. ..+.++..+..... ...+..+++.+.+.|+
T Consensus 139 ~~D~~~a~lLA~~~~---~~e~l~~~~E~~Y~~L~--~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 139 PEDYPFAALLAMTSE---DVEELAERMEQCYQKLA--DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccchhHHHHHhcccc---cHHHHHHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 234455555433111 11334567778888887 667766433 44444444433333 3467788888888887
Q ss_pred CCCCchhHHHHHHH
Q 011587 249 MPENDVFIGTALVD 262 (482)
Q Consensus 249 ~p~~~~~~~~~li~ 262 (482)
......|..+.-
T Consensus 214 --kik~~~yp~lGl 225 (297)
T PF13170_consen 214 --KIKYMHYPTLGL 225 (297)
T ss_pred --ccccccccHHHH
Confidence 445555554443
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.81 E-value=0.38 Score=28.93 Aligned_cols=39 Identities=13% Similarity=-0.039 Sum_probs=23.3
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
++..+...+...|++++|+++++++++.. |.+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~---P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD---PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCCHHHHHHh
Confidence 44555666666666666666666666665 4455544443
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.77 E-value=4.5 Score=32.82 Aligned_cols=133 Identities=9% Similarity=0.026 Sum_probs=65.9
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC--CChhHHHHHh
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN--KDISSGKKVF 167 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~ 167 (482)
.++.+.+.+.++.| +...+..++..+.+.+ . +. .+.+++..++-+|.......+-.+... .-..-|.+++
T Consensus 14 lEYirSl~~~~i~~-~~~L~~lli~lLi~~~-~--~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHNIPV-QHELYELLIDLLIRNG-Q--FS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC-C--HH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 34555566667766 7777777777777776 5 33 344444555444443333222222111 0123344444
Q ss_pred ccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 011587 168 DQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245 (482)
Q Consensus 168 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (482)
.++. ..+..++..+.. .|++-+|+++.+... . .+......++.+..+.++...-..+++....
T Consensus 86 kRL~----~~~~~iievLL~-----~g~vl~ALr~ar~~~--~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KRLG----TAYEEIIEVLLS-----KGQVLEALRYARQYH--K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHhh----hhHHHHHHHHHh-----CCCHHHHHHHHHHcC--C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4433 234445556666 777777777776642 1 1111123345555555555444444444443
No 272
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.69 E-value=2.3 Score=40.11 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=45.2
Q ss_pred HhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 366 LGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
+...|+++.+...+... -+.....+...+++...+.|++++|....+.|+.... -+++....-.-.-...
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei--------e~~ei~~iaa~sa~~l 404 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI--------EDEEVLTVAAGSADAL 404 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc--------CChhheeeecccHHHH
Confidence 34455555555555444 1222344455555555555555555555555554444 2233322222223334
Q ss_pred CCchHHHHHHHHhHhcCCccCCcccEEE
Q 011587 444 ERWPDVESVRKQMKVKRVETEPGSSILQ 471 (482)
Q Consensus 444 g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 471 (482)
|-++++...|+++...+.+.+.++-..+
T Consensus 405 ~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred hHHHHHHHHHHHHhccCChhcccceeee
Confidence 4555555555555544444444433333
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=1.1 Score=36.03 Aligned_cols=51 Identities=14% Similarity=-0.091 Sum_probs=22.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
..|.++.+..-.+.+...+. +.....-.+|.-+-.+.|++.+|.++|..+.
T Consensus 144 D~gsy~dV~srvepLa~d~n--~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGN--PMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccccHHHHHHHhhhccCCCC--hhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 34444444444444433333 3333334444444445555555555554443
No 274
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.54 E-value=0.96 Score=40.03 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
.++..++..+...|+.+.+.+.+++. ...| +...|..++.+|.+.|+...|+..|+.+.+... +..|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~--edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA--EELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hhcCCCccHHHHH
Confidence 47788889999999999999988888 5556 888999999999999999999999999887522 3455568777777
Q ss_pred HHHHH
Q 011587 435 ALSNI 439 (482)
Q Consensus 435 ~l~~~ 439 (482)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
No 275
>PRK11906 transcriptional regulator; Provisional
Probab=92.46 E-value=2 Score=40.72 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=109.7
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHhc---------cCcHHHHHHHHHHhH
Q 011587 286 LTW--TAMATGMAIHG-----KGNEAIRLLDSMRD-CGVKPN-AVTFTSLFAACCH---------AGLVEEGLHLFDNMK 347 (482)
Q Consensus 286 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 347 (482)
..| ...+.+..... ..+.|..+|.+... ....|+ ...|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555544322 35678888988872 223444 3445444443322 334556677777776
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccc
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD 425 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 425 (482)
+ --+-|......+..+..-.++++.|..+|++. .+.|| ..+|-.....+.-.|+.++|.+.+++.+++.|.
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~----- 404 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR----- 404 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch-----
Confidence 6 33456777777777778888899999999988 56674 344544455566779999999999999999882
Q ss_pred ccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEEEeCCeeec
Q 011587 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSILQTTTHYTL 478 (482)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 478 (482)
+.-.......++.|+.. ..++|.+++-+- .+.....+.|.+.+++
T Consensus 405 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 449 (458)
T PRK11906 405 -RRKAVVIKECVDMYVPN-PLKNNIKLYYKE------TESESHRVIIDNILKL 449 (458)
T ss_pred -hhHHHHHHHHHHHHcCC-chhhhHHHHhhc------cccccchhhHHHHHHH
Confidence 22333444455566665 457777776432 2233444555554443
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.31 E-value=6.4 Score=33.50 Aligned_cols=218 Identities=19% Similarity=0.136 Sum_probs=157.0
Q ss_pred cCchHHHHHHHHHHHHhCCCCC-CchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHHHHHHHHHHhcCChHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPE-NDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTWTAMATGMAIHGKGNE 303 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~ 303 (482)
.+....+...+........ . ............+...+++..+...+..... .....+......+...+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLP--NSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCc--cccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHH
Confidence 3445555555555555442 1 1356778888899999999999988887652 355667777778888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCC--CcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFA-ACCHAGLVEEGLHLFDNMKSKWGV--EPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
+...+.........+. ........ .+...|+++.+...+.+.... .- ......+......+...++.+.+...+.
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 114 ALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 9999999887654432 22222333 788999999999999998552 21 1234445555555778899999999998
Q ss_pred cC-CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 381 GI-PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 381 ~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+. ...++ ...+..+...+...++++.+...+.......+ .....+..+...+...+.++++...+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------DNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------ccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 87 43444 67788888888999999999999999999887 445556666666667778899988887766
Q ss_pred hc
Q 011587 458 VK 459 (482)
Q Consensus 458 ~~ 459 (482)
..
T Consensus 264 ~~ 265 (291)
T COG0457 264 EL 265 (291)
T ss_pred Hh
Confidence 44
No 277
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=7.9 Score=34.37 Aligned_cols=142 Identities=10% Similarity=-0.044 Sum_probs=89.4
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-CH---HHHHHHHHHHHhcC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NV---LTWTAMATGMAIHG 299 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~~ 299 (482)
.......|+..++..+++...... +.+...-..+...|...|+.+.|..++..+... .. .....-|..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 344567889999999999988877 556677788899999999999999999998742 11 12222334444444
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
...+...+-++.-.. +-|...-..+...+...|+.+.|.+.+-.+.++..---|...-..+++.+.-.|
T Consensus 218 ~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444444332 125555556677777788888887766665554222234445555555555444
No 278
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.70 E-value=13 Score=35.73 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=108.2
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTA 290 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 290 (482)
..|.....+++..+.....+.-++.+..+|+..|- +-..+..++..|... .-+.-..+|+++.+ .|++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e----~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE----SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Confidence 45777777888888888888888888888887764 566677777777777 45566667776654 23333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC--CC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVK--PN---AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
|..-|- .++.+++..+|.+....=++ .+ ...|..+.... ..+.+....+...+.+..|...-...+.-+-.-
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444443 37777777777776554221 01 12344444322 346666677777766665555555666666667
Q ss_pred HhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHH
Q 011587 366 LGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSAC 398 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 398 (482)
|....++++|++++..+ .-..|...-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 77777777777777755 2233444444454443
No 279
>PRK11906 transcriptional regulator; Provisional
Probab=91.64 E-value=12 Score=35.63 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=104.3
Q ss_pred hHH--HHHHHHHHcCC-----ChHHHHHHHHhcc---CCC---HHHHHHHHHHHHhc---------CChHHHHHHHHHHH
Q 011587 255 FIG--TALVDMYSKCG-----CLDNALLIFSRMR---EKN---VLTWTAMATGMAIH---------GKGNEAIRLLDSMR 312 (482)
Q Consensus 255 ~~~--~~li~~~~~~g-----~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~ 312 (482)
..| ..++.+..... +.+.|..+|.+.. +-| ...|..+..++... ....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 45555544422 4578899999988 433 45565555544322 23557777888888
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHc-CCCCCCHH-
Q 011587 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMG-IPIKPDAI- 389 (482)
Q Consensus 313 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~- 389 (482)
+.+. -|......+..+....++++.|...|++...- .|| ...|........-.|+.++|.+.+++ +...|...
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 8763 37788777777778888899999999999872 444 44555555556678999999999998 46677543
Q ss_pred --HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 390 --LWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 390 --~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.....+..|+. ...+.|.+++-+-.+
T Consensus 408 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 AVVIKECVDMYVP-NPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHcC-CchhhhHHHHhhccc
Confidence 33333445554 467888888765433
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.64 E-value=0.6 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+|..+...+...|++++|...|+++++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4677888899999999999999999999887
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.50 E-value=0.33 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=22.4
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 011587 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274 (482)
Q Consensus 240 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~ 274 (482)
|++.++.. |.+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~---P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN---PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC---CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555 667777888888888888877775
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.32 E-value=0.51 Score=26.91 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
+|..|...|.+.|++++|..++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999998554
No 283
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.32 E-value=0.099 Score=41.60 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=64.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... + .-...+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcc
Confidence 345555556666666666666655544456666666666666655555555544111 1 12233455555666
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 371 HLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 371 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
.+++|.-++.++|...... ..+...++++.|.+.+. -.+++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al------~i~~~~~~~~~a~e~~~-------------~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEAL------EILHKLKDYEEAIEYAK-------------KVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCS------STSSSTHCSCCCTTTGG-------------GCSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHH------HHHHHHccHHHHHHHHH-------------hcCcHHHHHHHHHHHHhcCc
Confidence 6666666666553211110 01223334444432211 12457777777777776654
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.12 E-value=1.2 Score=36.82 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC--HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH--IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.+..+...|++.|+.+.|.+.|.++.+. ...+. ...+-.+|+.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445555555555555555555555542 22222 223344445555555555554444433
No 285
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.99 E-value=15 Score=35.23 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIV 363 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li 363 (482)
-..+..+.-+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+..+. ..+.+ ..+|+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~lpkSAti~YTaAL 338 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-SLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-cCCchHHHHHHHHH
Confidence 345667777889999999999988764322 23446677888898999999999988887552 33222 34565544
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.90 E-value=0.62 Score=26.54 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 287
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.74 E-value=22 Score=36.70 Aligned_cols=222 Identities=11% Similarity=-0.004 Sum_probs=122.4
Q ss_pred hccCchHHHHHHHHHHHHhCCCC----CCc-hhHHHHHHH-HHHcCCChHHHHHHHHhccC--------CCHHHHHHHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMP----END-VFIGTALVD-MYSKCGCLDNALLIFSRMRE--------KNVLTWTAMAT 293 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p----~~~-~~~~~~li~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 293 (482)
....++++|..+..++...-..| ..+ ...++++-. .....|++++|.++-+...+ ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678899999988877654311 001 112333322 23456888999888877653 35677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHhccCc--HHHHHHHHHHhHHhcCCCc-----CHHHHHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF-----AACCHAGL--VEEGLHLFDNMKSKWGVEP-----HIKHYSC 361 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 361 (482)
+..-.|++++|..+.....+.--+-+...|..+. ..+..+|+ ..+.+..|......+.... -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999988765542222333332222 12344563 2333333443333211111 1234444
Q ss_pred HHHHHhccCCHHHHHHHHHc-------CCCCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 362 IVDLLGRAGHLEEAYNFIMG-------IPIKPDAILW--RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~-------~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
+..++.+ .+.+..-... -...|-.... ..|+......|+.+.|...+.++.....+.+ ++ ++..+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~--~~~~a 659 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YH--VDYLA 659 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CC--chHHH
Confidence 4555544 3333222211 1222322222 3677788889999999999999988665311 11 22222
Q ss_pred HHHHHH--HHHhCCCchHHHHHHHH
Q 011587 433 FVALSN--IYASAERWPDVESVRKQ 455 (482)
Q Consensus 433 ~~~l~~--~~~~~g~~~~a~~~~~~ 455 (482)
-...+. .....|+.+++.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 223333 33467888888777665
No 288
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.54 E-value=17 Score=35.00 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHH
Q 011587 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALL 275 (482)
Q Consensus 196 ~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~ 275 (482)
+.-...+..+|. . +--+...|..++.+|... ..+.-..+++++.+..+ .+...-.-|...|- .++.+.+..
T Consensus 82 ~~~veh~c~~~l--~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df---nDvv~~ReLa~~yE-kik~sk~a~ 152 (711)
T COG1747 82 NQIVEHLCTRVL--E--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF---NDVVIGRELADKYE-KIKKSKAAE 152 (711)
T ss_pred HHHHHHHHHHHH--H--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc---hhHHHHHHHHHHHH-HhchhhHHH
Confidence 344445555555 2 234566778888888877 56677888888888875 23333344444444 488899998
Q ss_pred HHHhccCC------CH---HHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 276 IFSRMREK------NV---LTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 276 ~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
+|.++... +. ..|..++..- ..+.+..+.+..+... .|..--...+.-+-.-|....++++|.+++..
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~ 230 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKH 230 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 88887631 21 3677766532 4567888888877765 45555566777777889999999999999998
Q ss_pred hHHhcCCCcCHHHHHHHHHHHhc-cCCHHHHHHHHHcC
Q 011587 346 MKSKWGVEPHIKHYSCIVDLLGR-AGHLEEAYNFIMGI 382 (482)
Q Consensus 346 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 382 (482)
+.+ .-.-|...-..++.-+.. -......++.+..-
T Consensus 231 il~--~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s 266 (711)
T COG1747 231 ILE--HDEKDVWARKEIIENLRDKYRGHSQLEEYLKIS 266 (711)
T ss_pred Hhh--hcchhhhHHHHHHHHHHHHhccchhHHHHHHhc
Confidence 888 334455555666655432 23344444444444
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.44 E-value=15 Score=34.22 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKP---NAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
....+|..++..+.+.|.++.|...+..+...+... .......-.+.+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777788888888888888888776643211 223333344455566777888887777776
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.37 E-value=1 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..|..+...+...|++++|.+.++++++..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3566788889999999999999999999887
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.25 E-value=8.7 Score=31.20 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 129 RQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
.+.++.+.+.+++|+...+..+++.+.+.|++.....++..-.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3455556667788888888888888888887777666665433
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=23 Score=36.01 Aligned_cols=143 Identities=11% Similarity=0.030 Sum_probs=79.7
Q ss_pred hhhHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMF---NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
+++|....+... |..| .......+++.+.-.|++++|-...-.|...+..-|.-.+..+.. .++......
T Consensus 372 yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e-----~~~l~~Ia~ 444 (846)
T KOG2066|consen 372 YEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE-----LDQLTDIAP 444 (846)
T ss_pred HHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc-----ccccchhhc
Confidence 555555544332 2233 345667777878888888888877777777777777766666666 443332222
Q ss_pred HHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHH------------------HHHHhCCCCCCchhHHHHHHHH
Q 011587 202 LFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG------------------YMEKTFYMPENDVFIGTALVDM 263 (482)
Q Consensus 202 ~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~------------------~~~~~~~~p~~~~~~~~~li~~ 263 (482)
-+. ...-+.+...|..++..+.. .+...-.++.. +..+. ..+...-..|+..
T Consensus 445 ---~lP--t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~----Se~~~L~e~La~L 514 (846)
T KOG2066|consen 445 ---YLP--TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN----SESTALLEVLAHL 514 (846)
T ss_pred ---cCC--CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh----ccchhHHHHHHHH
Confidence 221 11112344455555555544 21111111111 11111 2233444568899
Q ss_pred HHcCCChHHHHHHHHhccCCC
Q 011587 264 YSKCGCLDNALLIFSRMREKN 284 (482)
Q Consensus 264 ~~~~g~~~~A~~~~~~~~~~~ 284 (482)
|...+++..|...+-...+++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred HHHccChHHHHHHHHhccChH
Confidence 999999999999988877643
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.17 E-value=0.72 Score=41.30 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=61.2
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDV 404 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 404 (482)
..-|.++|.+++|++.|..... -.+-|.+++..-..+|.+..++..|+.-.... .+. .-+..|.--+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3567788999999999888776 23337888888888899888888776655544 111 1223343334444445677
Q ss_pred hHHHHHHHHHHhcCC
Q 011587 405 ALGEKVGKILLQLQP 419 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~ 419 (482)
.+|.+-++.++++.|
T Consensus 182 ~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHhHHHHHhhCc
Confidence 777777787777776
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.01 E-value=5.5 Score=32.89 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=32.2
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc--CHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP--TDTTMVCVLSVSSQLGLLEFGACVHGYMEK 245 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 245 (482)
.+..+...|++ .|+.+.|++.|.++. +....+ -...+..+++...-.+++..+.....++..
T Consensus 38 ~~~~l~~~~~~-----~Gd~~~A~k~y~~~~--~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCK-----IGDLEEALKAYSRAR--DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHH-----hhhHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555 555555555555554 222222 233445555556666666666666555544
No 295
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.88 E-value=5.9 Score=28.68 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
..++|..|-+.+...+ .....+-.+-+..+...|+|++|..+.+.+.-||...|-+|-. .+.|..+++..-+.+|
T Consensus 20 cHqEA~tIAdwL~~~~---~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 20 CHQEANTIADWLHLKG---ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3567777777776665 2234444444556778899999999998888888888877655 4667777777777777
Q ss_pred HhCCCCCCHHHH
Q 011587 312 RDCGVKPNAVTF 323 (482)
Q Consensus 312 ~~~g~~p~~~~~ 323 (482)
...| .|....|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 7776 4444444
No 296
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.78 E-value=45 Score=38.75 Aligned_cols=316 Identities=9% Similarity=0.020 Sum_probs=167.0
Q ss_pred HhhhccCcchhhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCChhHHHHHhcc-CCCCCchhHHHHHHHHhcCCcc
Q 011587 115 SCARFCSLSTLWLGRQIHVHVTKRGF--MFNVLVATTLIHFYASNKDISSGKKVFDQ-MPMRSSATWNAMINGYCSQSKK 191 (482)
Q Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 191 (482)
+--+.+ . +.+|...++.-..... .-....|-.+...|+.-+++|....+... .. +...++.++ ....
T Consensus 1392 aSfrc~-~--y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--~~sl~~qil-~~e~---- 1461 (2382)
T KOG0890|consen 1392 ASFRCK-A--YARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--DPSLYQQIL-EHEA---- 1461 (2382)
T ss_pred HHHhhH-H--HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--CccHHHHHH-HHHh----
Confidence 333444 5 8888888877411111 11234455566689999999888777763 32 333333333 4455
Q ss_pred cccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 192 AKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.|++..|...|+.+. +..|+ ..+++-++......+.++.+....+-...... +.....++.=+.+--+.+++
T Consensus 1462 -~g~~~da~~Cye~~~----q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 -SGNWADAAACYERLI----QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS--EEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred -hccHHHHHHHHHHhh----cCCCccccchhhHHHhhhcccchhHHHhhhcchhhccC--HHHHHHHHHHHHHHhhhcch
Confidence 899999999999987 55565 66788888877778887776664444333321 11222233334444677777
Q ss_pred HHHHHHHHhccCCCHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHhccCcHH
Q 011587 271 DNALLIFSRMREKNVLTWTAM--ATGMAIHG--KGNEAIRLLDSMRDCGVKP---------NAVTFTSLFAACCHAGLVE 337 (482)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~~~~~ 337 (482)
+....... ..+..+|... .....+.. +.-.-.+.++.+++.-+.| =...|..++..+.-. +.+
T Consensus 1535 D~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~ 1610 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELE 1610 (2382)
T ss_pred hhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHH
Confidence 77776665 3344444443 22222222 2222223333333321111 012344444333211 111
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHH---HHhccCCHHHHH-H-HHHc-C--CCC-CCHHHHHHHHHHHHhcCCHhHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVD---LLGRAGHLEEAY-N-FIMG-I--PIK-PDAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~-~-~~~~-~--~~~-p~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
.-.+.+..........-+...|..-+. .+.+..++--|. + ++.. | +.+ --..+|-...+...+.|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111110000111112222221 122211111111 1 1111 1 111 23467888888888899999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..+=.+.+.+. +..+.-.+..+...|+...|+.++++....+.
T Consensus 1691 nall~A~e~r~----------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL----------PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc----------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88887777766 45777888889999999999999998886555
No 297
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.44 E-value=14 Score=32.33 Aligned_cols=204 Identities=7% Similarity=0.011 Sum_probs=107.1
Q ss_pred cCCCCcCHHHHHHHHHHh-hccCchHHHHHHHHHHHHhCCCCCCchh---HHHHHHHHHHcCCChHHHHHHHHhccC---
Q 011587 210 VSGVKPTDTTMVCVLSVS-SQLGLLEFGACVHGYMEKTFYMPENDVF---IGTALVDMYSKCGCLDNALLIFSRMRE--- 282 (482)
Q Consensus 210 ~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~--- 282 (482)
+.+-.||...=+.--++- .+...+++|..-|++.++..- +.... ....++..+.+.|++++....|.++..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEg--EKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEG--EKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 344555554433322221 233456677777777665432 32332 334456777788888888777777652
Q ss_pred ------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 011587 283 ------KNVLTWTAMATGMAIHGKGNEAIRLLDSMR----DC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG 351 (482)
Q Consensus 283 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 351 (482)
-+..+.|.++..-+...+.+-...+++.-. +. +-..--.|-..|...|...+.+.+..++++++.....
T Consensus 97 SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq 176 (440)
T KOG1464|consen 97 SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ 176 (440)
T ss_pred HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence 234456666665555555444444443221 11 1111122334566666777777777777777765211
Q ss_pred CC----------cCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHHHHHHHHHHH-----HhcCCHhHHHHHHH
Q 011587 352 VE----------PHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAILWRSLLSAC-----NVHGDVALGEKVGK 412 (482)
Q Consensus 352 ~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~ 412 (482)
-. .-...|..=|..|....+-.+...++++. .--|.+.... +|+-| .+.|.+++|..-|-
T Consensus 177 ~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFF 255 (440)
T KOG1464|consen 177 TEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFF 255 (440)
T ss_pred cccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHH
Confidence 10 11346666677777777766666666655 2224444333 23332 35667777765544
Q ss_pred HHHh
Q 011587 413 ILLQ 416 (482)
Q Consensus 413 ~~~~ 416 (482)
++.+
T Consensus 256 EAFK 259 (440)
T KOG1464|consen 256 EAFK 259 (440)
T ss_pred HHHh
Confidence 4443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.38 E-value=9.8 Score=30.52 Aligned_cols=51 Identities=12% Similarity=-0.052 Sum_probs=22.5
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
.+.++.+.++.++..+.-.. |.....-..-...+...|++.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34445555555555544443 2222222223333444455555555555544
No 299
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.28 E-value=26 Score=35.64 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=15.7
Q ss_pred HhccCCHHHHHHHHHcCCCCC
Q 011587 366 LGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~~~~p 386 (482)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999998888
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=2 Score=38.22 Aligned_cols=103 Identities=12% Similarity=0.184 Sum_probs=71.3
Q ss_pred HHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CC--------ChhhHHHHhcCCCCccHHHHHHHHHHCC
Q 011587 30 QLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PP--------NLFLFNTLIRCTPPQDSVLVFAYWVSKG 100 (482)
Q Consensus 30 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~--------~~~~~~~ll~~~~~~~a~~~~~~m~~~~ 100 (482)
.-...|.+.+..+...++..-... ..++.+...+-.+. +| ...+|-.++..-++++++.++..=++.|
T Consensus 54 kkF~~g~~~s~~~Vd~~V~v~~~~---~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYG 130 (418)
T KOG4570|consen 54 KKFERGLPVSSLTVDRLVDVISSR---EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYG 130 (418)
T ss_pred hhhhcCCCcceeehhhhhhccccc---cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhc
Confidence 334557777777777777777766 78888887766554 22 2233433443367778888888878888
Q ss_pred CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC
Q 011587 101 LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139 (482)
Q Consensus 101 ~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (482)
+.| |.++++.+|..+.+.+ + ...|.++.-.|+...
T Consensus 131 iF~-dqf~~c~l~D~flk~~-n--~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 131 IFP-DQFTFCLLMDSFLKKE-N--YKDAASVVTEVMMQE 165 (418)
T ss_pred ccc-chhhHHHHHHHHHhcc-c--HHHHHHHHHHHHHHH
Confidence 888 8888888888888877 7 777777777776654
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=6.5 Score=38.43 Aligned_cols=150 Identities=10% Similarity=-0.079 Sum_probs=98.6
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|+++.|..++..+. ...-+.+...+.+.+ - .++|+++ .+|+.. -.....+.|+++.|
T Consensus 600 rd~~~a~~vLp~I~--------k~~rt~va~Fle~~g-~--~e~AL~~---------s~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 600 RDLEVADGVLPTIP--------KEIRTKVAHFLESQG-M--KEQALEL---------STDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred ccccccccccccCc--------hhhhhhHHhHhhhcc-c--hHhhhhc---------CCChhh---hhhhhhhcCcHHHH
Confidence 66666655443332 123334444455555 4 5555543 333322 23445677899999
Q ss_pred HHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 011587 164 KKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYM 243 (482)
Q Consensus 164 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (482)
.++..+.. +..-|..|..+... .+++..|.+.|.+.+ -|..|+-.+...|+-+....+-...
T Consensus 657 ~~la~e~~--s~~Kw~~Lg~~al~-----~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 657 FDLAVEAN--SEVKWRQLGDAALS-----AGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHhhc--chHHHHHHHHHHhh-----cccchhHHHHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHH
Confidence 88876543 67789999999999 899999999998875 3567777888888888777777777
Q ss_pred HHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC
Q 011587 244 EKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE 282 (482)
Q Consensus 244 ~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 282 (482)
.+.|. . |....+|...|+++++.+++.+-..
T Consensus 719 ~~~g~---~-----N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 719 KKQGK---N-----NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred Hhhcc---c-----chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 77763 2 2334466778888888888776543
No 302
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.29 E-value=24 Score=33.55 Aligned_cols=203 Identities=11% Similarity=0.045 Sum_probs=109.9
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHH-------HHHHhh-cc---CchHHHHHHHHH
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC-------VLSVSS-QL---GLLEFGACVHGY 242 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~-------l~~~~~-~~---~~~~~a~~~~~~ 242 (482)
=+.++..++....+ .++..+|-+.+.-+. -..|+...-.- +-+..+ .- .+...-..+++.
T Consensus 297 li~~F~~~Ls~~Vk-----~~~T~~a~q~l~lL~----~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 297 LIDRFGNLLSFKVK-----QVQTEEAKQYLALLK----ILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHH-----HHhHHHHHHHHHHHH----hcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34567777777777 677777766666554 33343331111 111111 11 112222344455
Q ss_pred HHHhCCCCCCchhHHHHHHH---HHHcCCC-hHHHHHHHHhccC---CCHHHHHHHH----HHHHh---cCChHHHHHHH
Q 011587 243 MEKTFYMPENDVFIGTALVD---MYSKCGC-LDNALLIFSRMRE---KNVLTWTAMA----TGMAI---HGKGNEAIRLL 308 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~a~~~~ 308 (482)
....++ . ....-..|+. -+-+.|. -++|+++++.+.+ .|..+-|.+. ..|.. ...+..-..+-
T Consensus 368 ~qs~Di--D-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 368 IQSYDI--D-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHhhcc--c-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 544443 1 1111222222 2334444 7778888887764 3443333322 22322 23345555555
Q ss_pred HHHHhCCCCCCHH----HHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 309 DSMRDCGVKPNAV----TFTSLFA--ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 309 ~~m~~~g~~p~~~----~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
+-..+.|++|-.. .-|.|.. .+...|++.++.-.-..+. .+.|++.+|..+.-+.....++++|++++...
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5666777776432 2333333 2345688888876655554 36788888888888888888889999988886
Q ss_pred CCCCCHHHHHH
Q 011587 383 PIKPDAILWRS 393 (482)
Q Consensus 383 ~~~p~~~~~~~ 393 (482)
+ |+..++++
T Consensus 522 P--~n~~~~ds 530 (549)
T PF07079_consen 522 P--PNERMRDS 530 (549)
T ss_pred C--CchhhHHH
Confidence 4 56666654
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.28 E-value=4.7 Score=29.30 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
-+..+-++.+......|++....+.+.+|.+.+++..|.++|+-++.+.|.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3556666666777778888888888888888888888888888888754433 226665554
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.12 E-value=4.4 Score=29.13 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+..+.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666677777777888888888888888888888888888877764332 3445655543
No 305
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.67 E-value=30 Score=34.04 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=81.2
Q ss_pred ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChh-hHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHH
Q 011587 73 NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDF-TYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVA 147 (482)
Q Consensus 73 ~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (482)
+...|..+|.. .+.+.+..++..++.. .| .-. -|-.....=.+.| . .+.+.++|++.+. |++.+...|
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yP-l~~gyW~kfA~~E~klg-~--~~~s~~Vfergv~-aip~SvdlW 116 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YP-LCYGYWKKFADYEYKLG-N--AENSVKVFERGVQ-AIPLSVDLW 116 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--Cc-cHHHHHHHHHHHHHHhh-h--HHHHHHHHHHHHH-hhhhHHHHH
Confidence 44557777776 3334555555556543 24 211 2222222223444 5 8899999999986 467777778
Q ss_pred HHHHHHHH-hCCChhHHHHHhccCCC------CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhh
Q 011587 148 TTLIHFYA-SNKDISSGKKVFDQMPM------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207 (482)
Q Consensus 148 ~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~ 207 (482)
..++..+. ..|+.+...+.|+.... .+...|...|.--.. ++++.....+|++..
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~-----qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG-----QKSWKRVANIYERIL 178 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc-----cccHHHHHHHHHHHH
Confidence 77776554 45777778888876652 266778888887777 899999999999987
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.58 E-value=9.9 Score=34.03 Aligned_cols=43 Identities=12% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (482)
+++++.++..=.. +|+-||..+++.+|+.+.+.++..+|.++.
T Consensus 116 pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vv 158 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVV 158 (418)
T ss_pred hHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHH
Confidence 3344444444444 344455555555555555544444444443
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.40 E-value=1.6 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 388 AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 388 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
..+++.|...|...|++++|+.+++++.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578888899999999999999999887643
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.98 E-value=4.4 Score=33.78 Aligned_cols=75 Identities=12% Similarity=-0.043 Sum_probs=53.9
Q ss_pred CCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh---CCCCchhHHHHHHHHHHhCCChh
Q 011587 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR---GFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
+-+.|++.|-.+...+..- ++.....+...|.+. + .+++.+++...++. +-.+|+..+.+|++.|.+.|+++
T Consensus 121 ~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~kr--D--~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELE-TAELQYALATYYTKR--D--PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHcc--C--HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 4567888888887776654 666666666666543 5 78888888887774 23567888888888888888887
Q ss_pred HHH
Q 011587 162 SGK 164 (482)
Q Consensus 162 ~A~ 164 (482)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 309
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.86 E-value=18 Score=30.64 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+||-+.--+...|+++.|.+.|+...+....-+-...|.-|.- .--|++.-|.+-+...-+...-.|-...|--+++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 467888888889999999999999999887654333333333332 3458888888776666653222333333333322
Q ss_pred HHhccCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 365 LLGRAGHLEEAYNF-IMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 365 ~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
..-++.+|..- .++.. ..|..-|...|-.+. .|++.+ +.+++++..-..+-... ...-.+||..|.+-+...
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a~~n~~~-Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKISE-ETLMERLKADATDNTSL-AEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHhcc
Confidence 23356666544 44431 234444443333332 233221 23333333322100000 001256888999999999
Q ss_pred CCchHHHHHHHHhHhcC
Q 011587 444 ERWPDVESVRKQMKVKR 460 (482)
Q Consensus 444 g~~~~a~~~~~~m~~~~ 460 (482)
|+.++|..+|+-....+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998665433
No 310
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.83 E-value=18 Score=30.63 Aligned_cols=182 Identities=10% Similarity=-0.037 Sum_probs=105.6
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH-HHHHHHH--HHHhcCChHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL-TWTAMAT--GMAIHGKGNEA 304 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~a 304 (482)
-..|-+..|.-=|.+.+... |.-+.+||-|.--+...|+++.|.+.|+...+-|.. -|..+=+ ++.-.|++.-|
T Consensus 76 DSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 34455555555566666555 567788999999999999999999999999874432 2322222 23346888888
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc-cCCHHHHHHHHHcC
Q 011587 305 IRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR-AGHLEEAYNFIMGI 382 (482)
Q Consensus 305 ~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 382 (482)
.+=|-..-+.... |-...|-.+.. ..-++.+|..-+.+--+ | .+..-|...|-.|.- .=..+.+.+-...-
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 8877777655422 22223333332 23455555543333222 1 233444443333322 11222222222211
Q ss_pred CCC------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIK------PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.-. .-..||--+.+-+...|+.++|..+|+-++..+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 100 1234677788888999999999999999988766
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.80 E-value=14 Score=29.23 Aligned_cols=52 Identities=10% Similarity=-0.139 Sum_probs=29.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK 283 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 283 (482)
..++.++++.+++.|.-.. |.....-..-.-.+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr---P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR---PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC---CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665544 223333233334455666777777777766653
No 312
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.48 E-value=32 Score=33.14 Aligned_cols=237 Identities=8% Similarity=0.153 Sum_probs=128.8
Q ss_pred HHHhccCCC--CCchhHHHHHHHHhcCCccc-ccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHH-HHH
Q 011587 164 KKVFDQMPM--RSSATWNAMINGYCSQSKKA-KDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEF-GAC 238 (482)
Q Consensus 164 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~ 238 (482)
..+|++..+ ++...|+..|..|...-... .......+.+|+.... ..+..+ ....|..+.-.++..+...+ |..
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~-~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHE-LKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 356665554 24555655555554311110 2245556666666541 334444 34466666666655554332 333
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHH-HHHHHhcc----CCCHHHHHHHHHHHHhcCC-hHH-HH-HHHH
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNA-LLIFSRMR----EKNVLTWTAMATGMAIHGK-GNE-AI-RLLD 309 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~~~----~~~~~~~~~li~~~~~~~~-~~~-a~-~~~~ 309 (482)
+. ..++ ..+...|..-+....+.. |.+-- ..+|.... .+....|+... .++ ++. .. .++.
T Consensus 381 l~----~e~f--~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 381 LT----TELF--RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred hh----HHHh--cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 33 2333 445566655555555332 22211 12222222 23444555444 122 111 11 2222
Q ss_pred HHHhCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---hccCCHHHHHHHHHcC--C
Q 011587 310 SMRDCGVKPNAVTF-TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL---GRAGHLEEAYNFIMGI--P 383 (482)
Q Consensus 310 ~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~ 383 (482)
..... ..|+..|+ +.++.-+-..+-..+|..++..+.. --+|+...|..+|..= ..+| +.-+..+++.+ .
T Consensus 450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE 525 (568)
T ss_pred HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH
Confidence 33333 34555554 4667777788888999999998887 5567788888777542 2333 66777788777 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 384 IKPDAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 384 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
+-.|+..|...+..-...|..+.+-.++.++.+
T Consensus 526 fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 526 FGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 226788888888777788888888777776655
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.47 E-value=15 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=7.9
Q ss_pred hccCCHHHHHHHHHcC
Q 011587 367 GRAGHLEEAYNFIMGI 382 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~ 382 (482)
...|++.+|+.+|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3444555555555544
No 314
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.28 E-value=3.2 Score=34.41 Aligned_cols=89 Identities=15% Similarity=0.038 Sum_probs=65.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCH-----HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhc
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHI-----KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVH 401 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 401 (482)
-+.+.|++++|..-|.+... -+++.. ..|..-..++.+.+.++.|++-..+. .+.|+ .....--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 46778999999999999988 444432 34555556778889999988777665 55553 22333334568888
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 011587 402 GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~ 419 (482)
..+++|+.-|..+++..|
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 899999999999999998
No 315
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.03 E-value=23 Score=30.94 Aligned_cols=58 Identities=19% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.+-|.+.|.+..|..-+++| .--| ....+-.+..+|...|-.++|.+.-+-+ ..+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~ 234 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL-GANY 234 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcC
Confidence 3456678888888887777776 1112 2334555677888888888887776644 4444
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.00 E-value=19 Score=35.45 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.-|..|.++..+.+++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555555555555555443
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.86 E-value=6.1 Score=31.15 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=38.3
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...++.++++.++..+.-..| .....-..-...+...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP--------~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP--------NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--------CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888877777 344444455556677888888888888877655
No 318
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.99 E-value=16 Score=32.46 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhc-c-CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 011587 301 GNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCH-A-GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 301 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 377 (482)
+.+|+.+|+.... ..+--|..+...+++.... . .....-.++.+.+...++..++..+...+++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555553211 1233355555555555443 1 12233334444444434455666666677777777777777777
Q ss_pred HHHcC--C--CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 378 FIMGI--P--IKPDAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 378 ~~~~~--~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
+++.. . ..-|...|..+|+.....||..-..++..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 76655 1 22366667777777777777555544444
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.86 E-value=21 Score=29.88 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=63.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNA-----VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
.-+.+.|++.+|..-|...++. +++.. ..|..-..++.+.+.++.|+.--.+..+- + +........-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-N-PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-C-chhHHHHHHHHHHHH
Confidence 4467889999999999999886 33332 23333445677888888888777777662 2 222333334456788
Q ss_pred ccCCHHHHHHHHHcC-CCCCCH
Q 011587 368 RAGHLEEAYNFIMGI-PIKPDA 388 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~-~~~p~~ 388 (482)
+..++++|++-|..+ ...|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 889999999888887 444544
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.58 E-value=2.3 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+|..+...|...|++++|...|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566777788889999999999998887665
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.16 E-value=31 Score=30.99 Aligned_cols=219 Identities=10% Similarity=-0.039 Sum_probs=121.8
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHH------HHHHHHHHhhccC-chHHHHHHHHHHHHh----C----CCCC---Cch
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDT------TMVCVLSVSSQLG-LLEFGACVHGYMEKT----F----YMPE---NDV 254 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~p~---~~~ 254 (482)
.|+.+.|..++.+...-.....|+.. .|+.-... ...+ +++.|...+++..+. + ..|. ...
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 78888888888887621112333321 22222333 3444 788887777766544 1 1110 123
Q ss_pred hHHHHHHHHHHcCCChH---HHHHHHHhccC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 255 FIGTALVDMYSKCGCLD---NALLIFSRMRE--KN-VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+...++.+|...+..+ +|..+++.+.. ++ ..++-.-+..+.+.++.+.+.+.+.+|...- .-....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 46778888998888765 45555555542 33 4556566777777899999999999998862 223345555555
Q ss_pred HH---hccCcHHHHHHHHHHhHHhcCCCcCHH-HHHHH-HHH---HhccC------CHHHHHHHHHcC----CCCCCHHH
Q 011587 329 AC---CHAGLVEEGLHLFDNMKSKWGVEPHIK-HYSCI-VDL---LGRAG------HLEEAYNFIMGI----PIKPDAIL 390 (482)
Q Consensus 329 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l-i~~---~~~~g------~~~~A~~~~~~~----~~~p~~~~ 390 (482)
.+ ... ....|...+..+... .+.|... ....+ +.- ..+.+ +.+...++++.. +.+.+..+
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 44 333 345566666666653 5555543 11111 111 11211 144444555532 22223333
Q ss_pred H---HHH----HHHHHhcCCHhHHHHHHHHHH
Q 011587 391 W---RSL----LSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 391 ~---~~l----~~~~~~~g~~~~a~~~~~~~~ 415 (482)
- .++ ...+.+.++++.|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 222 234567899999999998655
No 322
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=84.15 E-value=14 Score=27.13 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
...++|..|.+.+...+ .....+-.+-+..+...|+|++|+..=.....||...|-+|-. .+.|--+++...+.+
T Consensus 20 HcH~EA~tIa~wL~~~~---~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG---EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHHHHHTT---TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 35677888888887776 3344444555566778888888854444445678777766554 477888888888887
Q ss_pred HHhCC
Q 011587 311 MRDCG 315 (482)
Q Consensus 311 m~~~g 315 (482)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76665
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.08 E-value=1.6 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHH
Q 011587 431 EDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
.....+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678899999999999999876
No 324
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.01 E-value=9.3 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=26.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 381 GIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 381 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
.+.+.|++....+.+++|.+.+|+..|.++++-+..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 33566777777777777777777777777777666443
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.52 E-value=12 Score=32.10 Aligned_cols=145 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred HHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCCCH-HHHHHHHHHHhccCcHH
Q 011587 263 MYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM----RDCGVKPNA-VTFTSLFAACCHAGLVE 337 (482)
Q Consensus 263 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~-~~~~~ll~~~~~~~~~~ 337 (482)
.+.-.+.+++|.++|.+... .|--..+++.|=..|-+. .+.|-+-|. .+|.-...+| +..+++
T Consensus 23 lfgg~~k~eeAadl~~~Aan-----------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAAN-----------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE 90 (288)
T ss_pred ccCCCcchHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence 45566789999999876543 122222222222222222 112222222 3444333433 344666
Q ss_pred HHHHHHHHhHHhc----CCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHcC-----CCCCCHHHHHHHHHH---HHhcCCH
Q 011587 338 EGLHLFDNMKSKW----GVEPHIKHYSCIVDLLGRA-GHLEEAYNFIMGI-----PIKPDAILWRSLLSA---CNVHGDV 404 (482)
Q Consensus 338 ~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~---~~~~g~~ 404 (482)
+|.+.++...+-+ .+..-....-.+...|-.- .++++|+..|+.. +-..+...-..++++ -+..+++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6665555444310 0111122333444555443 5666777666655 222333333334443 3567889
Q ss_pred hHHHHHHHHHHhcCC
Q 011587 405 ALGEKVGKILLQLQP 419 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~ 419 (482)
.+|.++|+++.+...
T Consensus 171 ~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887666
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.13 E-value=58 Score=33.28 Aligned_cols=189 Identities=15% Similarity=0.086 Sum_probs=89.2
Q ss_pred HcCCChHHHHHHHHhccC-----CC-----HHHHHHHHH--HHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHH
Q 011587 265 SKCGCLDNALLIFSRMRE-----KN-----VLTWTAMAT--GMAIHGKGNEAIRLLD--------SMRDCGVKPNAVTFT 324 (482)
Q Consensus 265 ~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~--~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~ 324 (482)
+-.+++..|...+..+.+ |+ ...+...+. .+-..|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 445667677777666653 11 122333332 2345578888888886 334444444443332
Q ss_pred HH----HHHHhccCcHHH--HHHHHHHhHHhcCCCcC--HHHH-HHHHHHHhccC---------CHHHHHHHH-HcCCCC
Q 011587 325 SL----FAACCHAGLVEE--GLHLFDNMKSKWGVEPH--IKHY-SCIVDLLGRAG---------HLEEAYNFI-MGIPIK 385 (482)
Q Consensus 325 ~l----l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~--~~~~-~~li~~~~~~g---------~~~~A~~~~-~~~~~~ 385 (482)
.+ |.-+....+..+ +.++++.+.....-.|+ ..++ ..++.++.... .+.++++.. ...+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 111112222233 66666666552222222 2222 33333332211 223344444 333322
Q ss_pred C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH-----HHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 386 P-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF-----VALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 386 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
- ...+++.|..-+. .|+..+..+........-... + .-....| ..+...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~--~--d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS--S--DYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh--h--hhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 1223333333333 688887666665554432210 0 0123344 3455568889999999998877653
No 327
>PRK09687 putative lyase; Provisional
Probab=82.82 E-value=36 Score=30.65 Aligned_cols=235 Identities=8% Similarity=-0.003 Sum_probs=105.0
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccc----hHHHHHHHHHhhhccCCCCcCH
Q 011587 142 FNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC----AFNALVLFRDMLVDVSGVKPTD 217 (482)
Q Consensus 142 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~----~~~a~~~~~~m~~~~~~~~p~~ 217 (482)
+|..+....+..+...|..+-...+.+-+..+|...-...+.++.. .|. ..++...+..+. . -.|+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~-----lg~~~~~~~~a~~~L~~l~--~--~D~d~ 105 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQ-----LGMAKRCQDNVFNILNNLA--L--EDKSA 105 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCccchHHHHHHHHHHH--h--cCCCH
Confidence 4444555555555555543333333332233444444444555555 332 234555555542 1 13444
Q ss_pred HHHHHHHHHhhccCchH--HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLE--FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGM 295 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 295 (482)
..-...+.++...+... ....+...+...-. ..+..+-...+.++++.++.+....+..-+..++..+-...+.++
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~--D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF--DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44444444444432211 01112222222111 234555556666666666544333333333445555555555555
Q ss_pred HhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 296 AIHG-KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 296 ~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
.+.+ ....+...+..+... ++..+-...+.++.+.++. .|...+-...+. + + .....+.++...|.. +
T Consensus 184 g~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred hcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-h
Confidence 5442 133455555554432 3445555566666666663 344433333331 2 1 123455566666664 4
Q ss_pred HHHHHHcC-CCCCCHHHHHHHHHHH
Q 011587 375 AYNFIMGI-PIKPDAILWRSLLSAC 398 (482)
Q Consensus 375 A~~~~~~~-~~~p~~~~~~~l~~~~ 398 (482)
|...+..+ .-.||..+-...+.++
T Consensus 253 a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 253 LLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHH
Confidence 55555554 2244555444444443
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.73 E-value=44 Score=32.06 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=81.3
Q ss_pred hhccCchHHHHH-HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH
Q 011587 227 SSQLGLLEFGAC-VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 227 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 302 (482)
-...|++-.|-+ ++..+.... .++.........+...|+++.+.+.+..... ....+..+++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~----~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQ----QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCC----CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 344566665554 444444433 3334334444556788999999999876654 56778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|..+-+.|....+. +.........+.-..|-++++...|+++..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 999999999887665 444443333344456788999999998876
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.64 E-value=3.6 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666666553
No 330
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.51 E-value=35 Score=30.31 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=64.9
Q ss_pred cCCCCcCHHHHHHHHHHhhccC-----chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC
Q 011587 210 VSGVKPTDTTMVCVLSVSSQLG-----LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN 284 (482)
Q Consensus 210 ~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 284 (482)
..+.++|......++..+...+ +..-..+...+- +.+-.|..++.....+...|.+.|++.+|+..|-.-..++
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 3455555555555554444332 122223333333 4444446688889999999999999999998876665555
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
...+..++......|...++ +...-..++. |.-.++...|...++...++
T Consensus 121 ~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 121 AFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 55543344333333333332 2333333444 34457888888877777764
No 331
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.23 E-value=4.4 Score=22.34 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
No 332
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.26 E-value=3.1 Score=22.84 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..+..+...+.+.|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999988754
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.24 E-value=28 Score=28.39 Aligned_cols=136 Identities=8% Similarity=-0.016 Sum_probs=84.3
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh-HHHHHHHHHHhCCChhHHHHHhccCCCC--CchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL-VATTLIHFYASNKDISSGKKVFDQMPMR--SSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 181 (482)
+...|...++..... . .++|..-|..+.+.|...-+. ..-.........|+...|...|.++-.. .+.....+
T Consensus 58 sgd~flaAL~lA~~~--k--~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 58 SGDAFLAALKLAQEN--K--TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred chHHHHHHHHHHHcC--C--chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 445566665553333 3 778888888888876543222 2233445567788888888888887532 22222111
Q ss_pred H---HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC
Q 011587 182 I---NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM 249 (482)
Q Consensus 182 i---~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 249 (482)
. .+|.- ++.|.++......+-+- ..+-+.-...-..|.-+-.+.|++.+|.+.|.++......
T Consensus 134 ARlraa~lL---vD~gsy~dV~srvepLa--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 134 ARLRAAYLL---VDNGSYDDVSSRVEPLA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHHHH---hccccHHHHHHHhhhcc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 1 12211 12788888887777775 4454445555567777778889999999999888775543
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.14 E-value=2.7 Score=25.26 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 435 ALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57899999999999999999998654
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.85 E-value=19 Score=26.27 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
+.-+-.+.+.|++....+.+++|.+..|+..|.++|+-+..+-. +....|..++.
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--------~~~~~Y~~~lq 87 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--------NKKEIYPYILQ 87 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--------T-TTHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--------ChHHHHHHHHH
Confidence 33334446778888888899999999999999999988877655 33336665553
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.46 E-value=21 Score=29.89 Aligned_cols=73 Identities=14% Similarity=-0.066 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP-ENDVFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~A 273 (482)
.|.+.|-.+. ..+.--++.....+...|. ..+.+++..++..+++..-.- ..++..+.+|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E--~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLE--GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHc--CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444454443 3333333333333333333 444555555555444432110 22444455555555555554444
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.25 E-value=43 Score=29.90 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCCHHHH
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMR-----DCGVKPNAVTF 323 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~~ 323 (482)
.+++.....|..+|.+.+|.++-++... -+...|-.++..+...|+--.+..-++++. +.|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445566677788888888888877764 255667777788888888777776666663 34555554443
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.21 E-value=26 Score=27.65 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc
Q 011587 319 NAVTFTSLFAACCHAGL-VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (482)
+..+|.+++.+.++... --.+..+|+.+++ .+.+++...|..+|.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 33455566666555444 3344555555555 35566666666666655543
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.94 E-value=4 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+..++.+.|++++|.+.|+++++..|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 456677888999999999999998877
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.17 E-value=79 Score=32.31 Aligned_cols=177 Identities=15% Similarity=0.092 Sum_probs=98.1
Q ss_pred HHHHHHH-HhCCCCCCchhHHHHHHHHHH-cCCChHHHHHHHHhccC----CCH-----HHHHHHHHHHHhcCChHHHHH
Q 011587 238 CVHGYME-KTFYMPENDVFIGTALVDMYS-KCGCLDNALLIFSRMRE----KNV-----LTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 238 ~~~~~~~-~~~~~p~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~----~~~-----~~~~~li~~~~~~~~~~~a~~ 306 (482)
+-++.+. +..+.|.....++..+...+. ...+++.|+..+.+... ++. .....++..+.+.+... |..
T Consensus 42 ~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~ 120 (608)
T PF10345_consen 42 KCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALK 120 (608)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence 3344444 333333334555666666665 67778888888876642 211 12334556666666555 888
Q ss_pred HHHHHHhC----CCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHh--ccCCHHHHHH
Q 011587 307 LLDSMRDC----GVKPNAVTFTSL-FAACCHAGLVEEGLHLFDNMKSKWG--VEPHIKHYSCIVDLLG--RAGHLEEAYN 377 (482)
Q Consensus 307 ~~~~m~~~----g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~--~~g~~~~A~~ 377 (482)
.+++.++. +..+-...|..+ +..+...++...|.+.++.+..... ..|....+..++.+.. +.+..+++.+
T Consensus 121 ~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 121 NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 88776543 222333444443 2223233788888888888776422 3344455555555543 4455566666
Q ss_pred HHHcC-----C-------CCCCHHHHHHHHHHH--HhcCCHhHHHHHHHHHH
Q 011587 378 FIMGI-----P-------IKPDAILWRSLLSAC--NVHGDVALGEKVGKILL 415 (482)
Q Consensus 378 ~~~~~-----~-------~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 415 (482)
.++++ + -.|-..+|..++..+ ...|+++.+...++++.
T Consensus 201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65544 1 124556777777665 45677666666655554
No 341
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.05 E-value=47 Score=29.67 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHhcc-----CCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCcHHH
Q 011587 267 CGCLDNALLIFSRMR-----EKNVLTWTAMATGMAIHG--KGNEAIRLLDSMRD-CGVKPNAVTFTSLFAACCHAGLVEE 338 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~ 338 (482)
...+.+|+++|+... -.|..+...+++...... ....-.++.+-+.. .|-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 334678888888432 246677777777776622 23334444444433 3457788888899999999999999
Q ss_pred HHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 339 GLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 339 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
-.++|+......+...|...|..+|+.....|+..-...+..+-
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 99999998874456778999999999999999999999988765
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.84 E-value=48 Score=29.62 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+++.....|..+|.+.+|.++.++.+..+| .+...+-.|+..+...|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp--------L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP--------LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh--------hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456678999999999999999999999 899999999999999999777777666654
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.03 E-value=10 Score=32.05 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 392 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+.-++.+.+.+...+|+...++-++..| .+..+-..++..|+-.|+|++|..-++-..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP--------tda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP--------TDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC--------ccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445566677777888888887777777 677777777888888888887776555443
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.82 E-value=82 Score=31.72 Aligned_cols=179 Identities=13% Similarity=0.024 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCchhHHHHHHH--H-HHcCCChHHHHHHHHhccC--------CCHHHHHHHHHHHHhcC--
Q 011587 233 LEFGACVHGYMEKTFYMPENDVFIGTALVD--M-YSKCGCLDNALLIFSRMRE--------KNVLTWTAMATGMAIHG-- 299 (482)
Q Consensus 233 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~-- 299 (482)
...+.++++...+.|. ........++. + +....|.+.|..+|+...+ -+.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 4567777887777773 22222222222 2 3355678888888876643 12334455555555532
Q ss_pred ---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh--ccCCHH
Q 011587 300 ---KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH-AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG--RAGHLE 373 (482)
Q Consensus 300 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~ 373 (482)
+...|..++.+.-+.|. |+...+...+.-... ..+...|.++|....+. |..+. ..+.+++.... -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~A-~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHILA-IYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCCcCCCHH
Confidence 45667777777766653 355444333333333 24566777777777763 43321 12211111111 223566
Q ss_pred HHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 374 EAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 374 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|..++.+. + .|...--...+..+.. ++.+.+.-.+..+.+.+.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 666666655 2 2222222222223333 566666666666666555
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.39 E-value=5.6 Score=21.81 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
.+|..+...|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998764
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=76.87 E-value=9.1 Score=34.65 Aligned_cols=93 Identities=17% Similarity=0.094 Sum_probs=61.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
..-|.++|++++|+++|..-... .| |.+++..-..+|.+...+..|+.-......- . ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 35689999999999999988775 45 8888888889999999988887766665541 1 111223333333333445
Q ss_pred CHHHHHHHHHcC-CCCCCH
Q 011587 371 HLEEAYNFIMGI-PIKPDA 388 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~~p~~ 388 (482)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 555555555544 566763
No 347
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.53 E-value=53 Score=28.91 Aligned_cols=187 Identities=9% Similarity=0.016 Sum_probs=121.2
Q ss_pred cCCChHHHHHHHHhccC--C-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhcc
Q 011587 266 KCGCLDNALLIFSRMRE--K-----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC---GV--KPNAVTFTSLFAACCHA 333 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~ 333 (482)
+..+.++|+.-|.++.+ + .-.+.-.+|..+.+.+++++.+..+.+|..- -+ .-+..+.+.++...+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34478899999988864 2 3346667889999999999999999988532 11 22456678888877777
Q ss_pred CcHHHHHHHHHHhHHhcC----CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------C---CC---CCHHHHHHHH
Q 011587 334 GLVEEGLHLFDNMKSKWG----VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------P---IK---PDAILWRSLL 395 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~---~~---p~~~~~~~l~ 395 (482)
.+++....+++...+... -..--.|-+-|...|...+.+.+..+++++. | .+ --...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777776666665443211 1111224456777788888888777777665 1 01 1234666777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH----HHHHhCCCchHHHH-HHHHhHh
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS----NIYASAERWPDVES-VRKQMKV 458 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~-~~~~m~~ 458 (482)
..|..+++-..-..++++.+....- .|.+.....+- ....+.|.|++|.. .|+.++.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSA------IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSA------IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhcc------CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 8888888888888889887764431 15554443322 23456788888864 5555553
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.57 E-value=7.2 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=12.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.45 E-value=7.2 Score=26.87 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=25.3
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (482)
..++.++|...+...++.-..|+.-..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666665555443333334455555666666666555543
No 350
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.57 E-value=27 Score=24.66 Aligned_cols=66 Identities=8% Similarity=-0.091 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHH
Q 011587 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 236 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
+.++++...+.|+. +......+-.+-...|+.+.|..+++.+. .....|..+++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il---T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL---TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666642 23333333333335577788888888887 77777788888777777655543
No 351
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=74.15 E-value=58 Score=28.16 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|.+.....++..|.+ +++++|.+.+.++.+.|.
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY 269 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC
Confidence 4566666666655543 566777777777777666
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.13 E-value=1.9e+02 Score=34.19 Aligned_cols=303 Identities=8% Similarity=0.006 Sum_probs=153.2
Q ss_pred CCCccHHHHHHHH----HHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 011587 84 TPPQDSVLVFAYW----VSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKD 159 (482)
Q Consensus 84 ~~~~~a~~~~~~m----~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 159 (482)
+.+.+|+-.++.- .... . ...-|..+...|+..+ + +|...-+..... -+...+. -+-.....|+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~--~-~e~l~fllq~lY~~i~-d--pDgV~Gv~~~r~-----a~~sl~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKE--T-EEALYFLLQNLYGSIH-D--PDGVEGVSARRF-----ADPSLYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHHHHHHhccccchhH--H-HHHHHHHHHHHHHhcC-C--cchhhhHHHHhh-----cCccHHH-HHHHHHhhcc
Confidence 7788888888873 2221 1 2233444444888888 8 888777665411 1223333 4445567899
Q ss_pred hhHHHHHhccCCCC--C-chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHH-HHHhhccCchHH
Q 011587 160 ISSGKKVFDQMPMR--S-SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV-LSVSSQLGLLEF 235 (482)
Q Consensus 160 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~ 235 (482)
++.|...|+.+.+. + ..+++-++..... .+.+..++...+-.. ....+....++++ +.+--+.++++.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~-----~~~l~t~i~~~dg~~---~~~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLA-----IQHLSTEILHLDGLI---INRSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhc-----ccchhHHHhhhcchh---hccCHHHHHHHHHHHHHHhhhcchhh
Confidence 99999999999853 3 5578877777766 777777777555542 2233333344333 344467788887
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC--ChHHHHHHHHhccC----C---------CHHHHHHHHHHHHhcCC
Q 011587 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCG--CLDNALLIFSRMRE----K---------NVLTWTAMATGMAIHGK 300 (482)
Q Consensus 236 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~----~---------~~~~~~~li~~~~~~~~ 300 (482)
.+.... ..+ ..+..+.. +.....+.. |.-.-.+..+.+.+ + -...|..++....-.
T Consensus 1537 ~e~~l~---~~n---~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-- 1607 (2382)
T KOG0890|consen 1537 LESYLS---DRN---IEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-- 1607 (2382)
T ss_pred hhhhhh---ccc---ccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH--
Confidence 777665 111 11222221 222222221 11111122222211 1 112344444433221
Q ss_pred hHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHhccCcHHHHHHHHHHhHHhc----CC-CcCHHHHHHHHHHHhcc
Q 011587 301 GNEAIRLLDSMRDCGVKPNAV------TFTSLFAACCHAGLVEEGLHLFDNMKSKW----GV-EPHIKHYSCIVDLLGRA 369 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~ 369 (482)
+-....+... +..++.. -|..-+..-....+..+-.--+++..-.. +. .-...+|-...+...+.
T Consensus 1608 --el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1608 --ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred --HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 1111111111 1222211 11111111111111111111111111100 11 12356888888888889
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 370 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|+++.|...+-+.+...-...+--..+-+-..|+...|..++++.++...
T Consensus 1684 G~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred ccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99999977665552122333444456667889999999999999997655
No 353
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.72 E-value=63 Score=27.95 Aligned_cols=145 Identities=11% Similarity=0.044 Sum_probs=67.5
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCC---CCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChH
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMP---ENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 302 (482)
.+.-.+.+++|.+++.+.-..--+. ..--..|.-....+.+.|.-++|- .+|.-...+| +..++.
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaa-----------t~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAA-----------TTYVEAANCY-KKVDPE 90 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHH-----------HHHHHHHHHh-hccChH
Confidence 5556668889888887754321100 111122233333333444322222 2333333333 334666
Q ss_pred HHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCC-CcCHH---HHHHHHHHHhccCCH
Q 011587 303 EAIRLLDSMRDC----G-VKPNAVTFTSLFAACCHA-GLVEEGLHLFDNMKSKWGV-EPHIK---HYSCIVDLLGRAGHL 372 (482)
Q Consensus 303 ~a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~---~~~~li~~~~~~g~~ 372 (482)
+|...++..++- | ..--...+..+...|-.. .++++|+..|+..-+-+.. +.+.. .+--....-+..+++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 665555544321 1 011111222334444332 5667777777766552211 11222 222222333567889
Q ss_pred HHHHHHHHcC
Q 011587 373 EEAYNFIMGI 382 (482)
Q Consensus 373 ~~A~~~~~~~ 382 (482)
.+|.++|++.
T Consensus 171 ~~Ai~iyeqv 180 (288)
T KOG1586|consen 171 SKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 354
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.56 E-value=56 Score=27.32 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH--
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT--SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC-- 361 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 361 (482)
..|..++.... .+.+ +.....+++........-.++. .+...+...+++++|+..++..... |....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~ 128 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHH
Confidence 34555555543 3444 5556666666653221222222 3345677899999999999988763 33334433
Q ss_pred ---HHHHHhccCCHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 362 ---IVDLLGRAGHLEEAYNFIMGIPIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 362 ---li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|.......|.+|+|+..++...-+ -.......-...+...|+-++|..-|+..++.+.
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 345677889999999999987311 1222334445678899999999999999999865
No 355
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.56 E-value=35 Score=24.92 Aligned_cols=78 Identities=9% Similarity=-0.003 Sum_probs=55.8
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
.-..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+ .|..+.+..
T Consensus 18 ~HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~r-----lGl~s~l~~ 89 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WR-----LGLGSALES 89 (115)
T ss_pred chHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--Hh-----hccHHHHHH
Confidence 33477888887777665422 33333344456889999999999999999999999987754 34 667777777
Q ss_pred HHHHhh
Q 011587 202 LFRDML 207 (482)
Q Consensus 202 ~~~~m~ 207 (482)
-+.+|.
T Consensus 90 rl~rla 95 (115)
T TIGR02508 90 RLNRLA 95 (115)
T ss_pred HHHHHH
Confidence 777774
No 356
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=71.72 E-value=59 Score=29.28 Aligned_cols=74 Identities=11% Similarity=0.227 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----------cCCHH
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----------AGHLE 373 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~ 373 (482)
-.++|+.|.+.++.|.-..|..+.-.+++.=.+..+..+|+.+..+ ..-|..|+..|+. .|++.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3578889999999999999999988899999999999999999883 2235555555543 58888
Q ss_pred HHHHHHHcCC
Q 011587 374 EAYNFIMGIP 383 (482)
Q Consensus 374 ~A~~~~~~~~ 383 (482)
...++++...
T Consensus 336 ~nmkLLQ~yp 345 (370)
T KOG4567|consen 336 VNMKLLQNYP 345 (370)
T ss_pred HHHHHHhcCC
Confidence 8888888763
No 357
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.63 E-value=9.2 Score=19.76 Aligned_cols=30 Identities=23% Similarity=0.113 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|..+...+...|+++.|...++..++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 456667778888888888888888877655
No 358
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.35 E-value=1.3e+02 Score=30.88 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchhHHHHHHHHhcCC--cccccchHHHHHHHHHhh
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMP---MRSSATWNAMINGYCSQS--KKAKDCAFNALVLFRDML 207 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~--~~~~~~~~~a~~~~~~m~ 207 (482)
..+|. +|..|.++|++++|.++..+.. +.....+-..+..|..+. ......-++...-|++..
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~ 179 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRI 179 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHT
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 33454 6778889999999999993332 234455666677776632 122223334444455443
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.83 E-value=67 Score=27.47 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-----CCCCCHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-----PIKPDAILWRSLLS 396 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~ 396 (482)
|.+.-++.+.+.+...+++...+.-.+ ..+.+.-+-..+++.|+-.|++++|..-++-. ...+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344456667777888888888887777 33455666777889999999999996665544 33445667777765
Q ss_pred H
Q 011587 397 A 397 (482)
Q Consensus 397 ~ 397 (482)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 360
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.83 E-value=31 Score=26.58 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhc
Q 011587 127 LGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFD 168 (482)
Q Consensus 127 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 168 (482)
.+.++|+.|...|+.. -+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666665533 34456666666666666666666654
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.66 E-value=1.3e+02 Score=30.88 Aligned_cols=95 Identities=8% Similarity=-0.157 Sum_probs=47.1
Q ss_pred HHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CcccccccCCchhHHHHHHHHHh
Q 011587 364 DLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP-EVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
..+...|+...|...+..+.-..+......+.....+.|..+.+..........+. +. .-+..|...+..+.+
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~------rfp~~~~~~~~~~a~ 488 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE------RFPLAWNDEFRRYTS 488 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH------hCCcchHHHHHHHHH
Confidence 34556677777777766652224444555555555667777777665544322110 00 012235555555555
Q ss_pred CCCchHHHHHHHHhHhcCCccC
Q 011587 443 AERWPDVESVRKQMKVKRVETE 464 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~~~~~~ 464 (482)
.-.++.+.-.----.+.++.|.
T Consensus 489 ~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 489 GKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HcCCCHHHHHHHHHHhcCCCCC
Confidence 5555554432222224444444
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.26 E-value=74 Score=28.36 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhH
Q 011587 434 VALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.-++.++.+.|.+.+|..++..+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 357888999999999998765443
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.92 E-value=35 Score=26.06 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+..+-++.+..-.+.|+......-+.+|.+.+++..|.++|+-++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 45556666667778888888888899998899999999998888874 333333454444
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.14 E-value=71 Score=26.74 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=45.5
Q ss_pred HHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHH--HHHHHHHHHhcCChH
Q 011587 225 SVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLT--WTAMATGMAIHGKGN 302 (482)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 302 (482)
..+...+++++|+.-++..............+--.|.......|.+++|+.+++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 344555666666666655543321000011112234445556666666666666665553222 233334566666666
Q ss_pred HHHHHHHHHHhCC
Q 011587 303 EAIRLLDSMRDCG 315 (482)
Q Consensus 303 ~a~~~~~~m~~~g 315 (482)
+|..-|.+..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666665554
No 365
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.94 E-value=1.1e+02 Score=28.96 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAV--TFTSLFAACC--HAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 348 (482)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34567777777777777665 444433 3333334443 24556677777776665
No 366
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=67.52 E-value=72 Score=26.58 Aligned_cols=90 Identities=14% Similarity=0.082 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCHHHHH-HHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCc-------ccccccCC
Q 011587 358 HYSCIVDLLGRAGHLEEAY-NFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV-------TFVDVACT 429 (482)
Q Consensus 358 ~~~~li~~~~~~g~~~~A~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~ 429 (482)
.|..+.++-++.-..+++- .++.++| -+++..|.+..++.++.++++.+.+....- +..+..+.
T Consensus 109 PFceFAetV~k~~q~~e~dK~~LGRiG--------iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asr 180 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLLGRIG--------ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASR 180 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCch
Confidence 3445555555554444432 2333444 236667888888999999999888765431 11222355
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 430 SEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
-...+.-+..+.++|..|.|..++++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 66777888999999999999999873
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.98 E-value=19 Score=24.93 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=21.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYN 377 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 377 (482)
..++.++|...|....++..-+++ -.++..++.+|+..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555553111111 1234445555555555555543
No 368
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.31 E-value=87 Score=27.11 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=26.2
Q ss_pred HHHHHhccCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 362 IVDLLGRAGHLEEAYNFIMGIPIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
++.++...|+.+.|+.+++..+-.+ +......++.. ..++.+.+|..+.+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 5555555666666666666653222 22222322323 44466666665555433
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.13 E-value=30 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|+..+|..++.++...|+.++|.++.+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777777777777777777766665
No 370
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.05 E-value=1.5e+02 Score=29.82 Aligned_cols=179 Identities=12% Similarity=0.007 Sum_probs=101.2
Q ss_pred hhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhcc-------CCCCcCHHHHHHHHHHhhccC
Q 011587 160 ISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV-------SGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 160 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~p~~~~~~~l~~~~~~~~ 231 (482)
...|.++++...+. +...-..+...|..-+.....+.+.|+..|+... . .+ +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa--~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAA--ESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHH--HHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 35677777766543 4444334443333321222788999999998885 3 33 2334455555665532
Q ss_pred -----chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc-CCChHHHHHHHHhccC-CCHHHHHHHHHHHH----hcCC
Q 011587 232 -----LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK-CGCLDNALLIFSRMRE-KNVLTWTAMATGMA----IHGK 300 (482)
Q Consensus 232 -----~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~~~ 300 (482)
+.+.|..++.+..+.| .++.......+..... ..+...|..+|....+ -.+..+-.+..+|. ...+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCC
Confidence 5677888888888888 3344433333322222 2457788888887764 23333333333332 2346
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
...|..++.+.-+.| .|....-...+..+.. +..+.+.-.+..+..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 778888888888877 3343333334444444 666666666666655
No 371
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=65.65 E-value=45 Score=23.51 Aligned_cols=62 Identities=6% Similarity=0.027 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHhc-cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC
Q 011587 5 PGHRCFALLKLKAI-TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD 70 (482)
Q Consensus 5 p~~~~~~~~l~~~~-~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 70 (482)
|.+.+|...+++-. -..++ .++++.....|+..|+.++..++....-+ =.++...++++.+.
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE-~EL~ELa~~AGv~~dp~VFriildLL~~n---VsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEE-VELYELAQLAGVPMDPEVFRIILDLLRLN---VSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccCHHH-HHHHHHHHHhCCCcChHHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 35667777777652 22233 38899999999999999999999999988 88888899988876
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.36 E-value=34 Score=24.18 Aligned_cols=58 Identities=5% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhc
Q 011587 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187 (482)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 187 (482)
+.++++.+.+.|+- +......+-..-...|+.+.|.++++.++ +.+..|..++.++..
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLre 78 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRE 78 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHH
Confidence 44566666666532 22222322222224566777777777776 666677777776666
No 373
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.85 E-value=62 Score=24.91 Aligned_cols=44 Identities=9% Similarity=-0.001 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHh
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
.+..+|..|...|+. ......|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG-~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG-TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTS-TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 788999999998874 45667788889999999999999999875
No 374
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.84 E-value=69 Score=25.38 Aligned_cols=81 Identities=10% Similarity=0.253 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCC---------CCCchhHHHHHHHHhcCCcccccc-hHHHHHHHHHhhhccCCCCcC
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMP---------MRSSATWNAMINGYCSQSKKAKDC-AFNALVLFRDMLVDVSGVKPT 216 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~~~-~~~a~~~~~~m~~~~~~~~p~ 216 (482)
.|.++.-....+++.....+++.+. ..+...|+.++.+... ... ---+..+|+-|+ +.+.+++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~Slsn-----SsSaK~~~~~Lf~~Lk--~~~~~~t 114 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSN-----SSSAKLTSLTLFNFLK--KNDIEFT 114 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHcc-----ChHHHHHHHHHHHHHH--HcCCCCC
Confidence 5666666666777777777776664 1366788888888876 443 334677888887 6778888
Q ss_pred HHHHHHHHHHhhccCchH
Q 011587 217 DTTMVCVLSVSSQLGLLE 234 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~ 234 (482)
..-|..++.++.+....+
T Consensus 115 ~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 115 PSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHHHHHHHcCCCCc
Confidence 899999998887764433
No 375
>PRK12798 chemotaxis protein; Reviewed
Probab=64.68 E-value=1.3e+02 Score=28.56 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=118.5
Q ss_pred CCChHHHHHHHHhccC----CCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcHHHH
Q 011587 267 CGCLDNALLIFSRMRE----KNVLTWTAMATGM-AIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a 339 (482)
.|+-.+|.+.+..+.. +....|-.|+.+- ....++.+|+++|+...-. |.-........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6888899988888864 3556677777654 4556799999999987653 2112233444445556788999998
Q ss_pred HHHHHHhHHhcCCCcCHHHHHH-HHHHHhcc---CCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 340 LHLFDNMKSKWGVEPHIKHYSC-IVDLLGRA---GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
..+-.....++...|-..-|.. +..++.+. ...+.-..++..|.-.--...|-.+...-.-.|+.+.|.-.-+++.
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 8887777776555555443333 23333333 3455556677777422345678888888888999999999888888
Q ss_pred hcCCCcccccccCC--chhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 416 QLQPEVTFVDVACT--SEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 416 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
....+.. .+. ...|... +-.-..+++++.+.+..+....+.+
T Consensus 285 ~L~~~~~----~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 285 KLADPDS----ADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HhccCCC----cchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCCh
Confidence 8764210 011 1112111 1223456777777777666555543
No 376
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=1.1e+02 Score=27.83 Aligned_cols=147 Identities=12% Similarity=0.076 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHY 359 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 359 (482)
|...++.|..+ +..+.++-.+..++..+. |-.--..........||+.|+.+.|.+.+.+..++ .|.+.|...+
T Consensus 69 D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 69 DQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred cHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 44444444432 222344444444444443 32222345556667788888888888877765543 3556665554
Q ss_pred HHHHHHHh-----ccCCHHHHHHHHHcCC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch
Q 011587 360 SCIVDLLG-----RAGHLEEAYNFIMGIP---IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431 (482)
Q Consensus 360 ~~li~~~~-----~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
..-+..+. -...+++|..++++-| -+.-..+|..+- |....++.+|-.+|-+.+.-..+ -...
T Consensus 147 ~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS-------~El~ 217 (393)
T KOG0687|consen 147 KIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTS-------YELM 217 (393)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccc-------eecc
Confidence 43332221 1234667777777764 112234555443 34556888888888777665542 3445
Q ss_pred hHHHHHHHHH
Q 011587 432 DFVALSNIYA 441 (482)
Q Consensus 432 ~~~~l~~~~~ 441 (482)
+|..++..-.
T Consensus 218 ~Y~~~v~Ytv 227 (393)
T KOG0687|consen 218 SYETFVRYTV 227 (393)
T ss_pred cHHHHHHHHH
Confidence 5666555433
No 377
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.09 E-value=97 Score=27.61 Aligned_cols=85 Identities=5% Similarity=-0.067 Sum_probs=50.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhc----cCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc--
Q 011587 259 ALVDMYSKCGCLDNALLIFSRM----REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH-- 332 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 332 (482)
.=|.+++..|++.+++.+.-+- .+-.......-|-.|.+.+.+..+.++-..-...--.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3466777777777776554322 2234455566666677777777777776665543222233346666655543
Q ss_pred ---cCcHHHHHHHH
Q 011587 333 ---AGLVEEGLHLF 343 (482)
Q Consensus 333 ---~~~~~~a~~~~ 343 (482)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 57777777765
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.08 E-value=20 Score=19.00 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 402 GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
|+.+.+..+|++++...+ -+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~--------~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFP--------KSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCC--------CChHHHHHHHHH
Confidence 578899999999999887 567777766653
No 379
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.02 E-value=28 Score=29.21 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=25.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
..+.+......+.+.+.....|+...|..++.++...|+.++|.++.+++
T Consensus 121 ~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 121 PPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333332233556666666666666666666666665555
No 380
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.82 E-value=1.7e+02 Score=30.20 Aligned_cols=153 Identities=12% Similarity=0.111 Sum_probs=81.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKP---NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (482)
.-+.+.+.+++|++..+..... .| -.......|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence 3455667777777766554332 22 2234455666666677777777777666652 556666666666666
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC----------cccccc---cCCchhHHHH
Q 011587 370 GHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE----------VTFVDV---ACTSEDFVAL 436 (482)
Q Consensus 370 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~l 436 (482)
++......++=.-.-+.+...|..++..+.. .+. .-|.+.++.-|. ...+.+ .-+...-..|
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Confidence 6655444333222112245556666666554 221 112222211110 000000 0233344568
Q ss_pred HHHHHhCCCchHHHHHHHHhH
Q 011587 437 SNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+..|...++++.|..++-...
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 889999999999988765544
No 381
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=63.43 E-value=62 Score=24.82 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=44.5
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW-RSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
--..+..++..++.-.|..++|.++++..+..++-... ..++..|.++.+.++..++-++.+
T Consensus 64 ~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 64 CKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 34556677888888889999999998888555554444 457888888888777776655543
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.20 E-value=1.5e+02 Score=28.84 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=141.5
Q ss_pred hHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhcc------CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL------GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 196 ~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.+....+|++.. .-.|+...+...|..|... ..+.....+++.....+..-+.....|..+.-.++....
T Consensus 298 ~s~~~~v~ee~v----~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~ 373 (568)
T KOG2396|consen 298 ESRCCAVYEEAV----KTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE 373 (568)
T ss_pred HHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch
Confidence 344556676654 3345666666666666432 245566677777766654434566677777777777665
Q ss_pred hHH-HHHHHHhccCCCHHHHHHHHHHHHhc-CChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HH--HHHHHH
Q 011587 270 LDN-ALLIFSRMREKNVLTWTAMATGMAIH-GKGN-EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-VE--EGLHLF 343 (482)
Q Consensus 270 ~~~-A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~--~a~~~~ 343 (482)
..+ |..+..+....+...|..-++..... .+++ .-..+|......=..+-...++... .++ .. .-..++
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 444 45555466666777776665555422 1221 1222333333322222333333333 122 11 112233
Q ss_pred HHhHHhcCCCcCHH-HHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHhcC
Q 011587 344 DNMKSKWGVEPHIK-HYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNV--HGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 344 ~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~ 418 (482)
..+.+ .+ .|+.. .-+.+++-+.+.|-..+|...+... .. +|+...|..+|..-.. .-+..-+..+++.+....
T Consensus 449 ~a~~s-~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLS-VI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHH-hc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 33333 23 33333 3456778888899999999999888 23 3478888888876322 234788899999998876
Q ss_pred CCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
. .++..|.-....-...|..+.+-.++-.
T Consensus 527 g--------~d~~lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 527 G--------ADSDLWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred C--------CChHHHHHHHHhhccCCCcccccHHHHH
Confidence 6 6888888887777788888877776443
No 383
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.24 E-value=1.5e+02 Score=28.40 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=37.1
Q ss_pred HHHHHHHHHCCCCCCChhh--HHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh--HHHHHHHHHHhCCChhHHHH
Q 011587 90 VLVFAYWVSKGLLTFDDFT--YVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL--VATTLIHFYASNKDISSGKK 165 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~--~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 165 (482)
.++++.+.+.|..| +... ..+.+..++..+ + . ++.+.+.+.|..|+.. ....-+...+..|+.+.+..
T Consensus 15 ~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~-~--~----~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 15 LDIARRLLDIGINP-NFEIYDGISPIKLAMKFR-D--S----EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcC-C--H----HHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 45666667777666 5432 334444445555 4 3 3444445555444322 11223444556677766666
Q ss_pred HhccC
Q 011587 166 VFDQM 170 (482)
Q Consensus 166 ~~~~~ 170 (482)
+++.-
T Consensus 87 Ll~~~ 91 (413)
T PHA02875 87 LLDLG 91 (413)
T ss_pred HHHcC
Confidence 66543
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.27 E-value=1.6e+02 Score=31.32 Aligned_cols=29 Identities=3% Similarity=-0.028 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 429 TSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
....|......+.+.|+.++|..++-...
T Consensus 683 ~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 683 GDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred chhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 35566666666779999999998765443
No 385
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=61.17 E-value=23 Score=34.75 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=99.1
Q ss_pred CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC-------CCCccHHHHHHHHHHCCCCCCChhhHH
Q 011587 38 SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-------TPPQDSVLVFAYWVSKGLLTFDDFTYV 110 (482)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~-------~~~~~a~~~~~~m~~~~~~p~~~~~~~ 110 (482)
|+..+...++.-.+.. .-..-+-+-.+|-.|..|+...|-++=.+ |+...|...+.........- ......
T Consensus 569 ~~~~~~k~~~~r~~~~-~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~-~~v~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNY-TIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ-QDVPLV 646 (886)
T ss_pred chHHHHHHHHHHHhcc-cCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhh-hcccHH
Confidence 4444444444433332 22455667788888888888877666444 99999999998887654333 444566
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC---CchhHHHHHHHHhc
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR---SSATWNAMINGYCS 187 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 187 (482)
.+...+.+.+ - ...|..++.+.+... ...+-++-.+.++|....+++.|++.|+...+. +.+.-+.|...-|+
T Consensus 647 ~la~~~~~~~-~--~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 647 NLANLLIHYG-L--HLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHhh-h--hccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 6777777777 6 778888888887765 334567778889999999999999999886643 45555555544333
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.94 E-value=65 Score=24.73 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.-+-.+.+.|++.....-+++|.+.+|+..|.++|+-...+-.
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 33334446677777777777888888888888888777766544
No 387
>PRK09687 putative lyase; Provisional
Probab=59.86 E-value=1.3e+02 Score=27.03 Aligned_cols=235 Identities=10% Similarity=-0.045 Sum_probs=134.4
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh----hHHHHHhccC--CCCCchhH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDI----SSGKKVFDQM--PMRSSATW 178 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~~~~ 178 (482)
|.......+.++...+ . +.+...+..+.+ .+|...-...+.+++..|+. +++...+..+ ..++...-
T Consensus 36 d~~vR~~A~~aL~~~~-~---~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR 108 (280)
T PRK09687 36 NSLKRISSIRVLQLRG-G---QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVR 108 (280)
T ss_pred CHHHHHHHHHHHHhcC-c---chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHH
Confidence 5556666666666666 3 333344444433 33555566666677777663 4566666655 34565555
Q ss_pred HHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHH
Q 011587 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258 (482)
Q Consensus 179 ~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 258 (482)
...+.++...+.........+...+.... ..++..+-...+.++++.++. .+...+-.+.+.. +..+-.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~-----~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~-----~~~VR~ 177 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA-----FDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDP-----NGDVRN 177 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh-----hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCC-----CHHHHH
Confidence 55555555522111111233444444332 123556666777777777764 4555555555432 444556
Q ss_pred HHHHHHHcCC-ChHHHHHHHH-hccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 259 ALVDMYSKCG-CLDNALLIFS-RMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 259 ~li~~~~~~g-~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
..+.++.+.+ +...+...+. .+..++..+-...+.++.+.|+. .|...+-+..+.+. .....+.++...|+.
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 6666666653 2334544444 44457778888888888888884 55555555555432 234677888888885
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
+|...+..+.+. .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 688888888763 346666555555543
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=59.22 E-value=39 Score=20.71 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=19.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666666666666666666555555543
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.21 E-value=14 Score=28.45 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=24.5
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHh
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~ 116 (482)
|.-.+|..+|.+|++.|-.| ..|+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pP---ddW~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPP---DDWDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCC---ccHHHHHHHh
Confidence 88899999999999999777 4577777654
No 390
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.59 E-value=1.1e+02 Score=28.18 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcc-------CCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMR-------EKNVLTW--TAMATGMAIHGKGNEAIRLLDSMRD-----CGVKPNAV 321 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 321 (482)
..++...-+.+|.++|+++++++. +|+.+.| ..+..++...|+..++.+++++.++ .|++|+..
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 334444445556666666666664 2455544 3344556677778888777777765 56666443
No 391
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.87 E-value=1.6e+02 Score=27.11 Aligned_cols=125 Identities=11% Similarity=-0.029 Sum_probs=71.0
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHh---cCCHhHHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNV---HGDVALGEKVG 411 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~a~~~~ 411 (482)
+.-..+++++.+. .+-+......++..+.+..+.++..+.++++ ...| +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 4455666666662 3345556666666666666666666666666 2223 56666666655433 23455666666
Q ss_pred HHHHhcCCCcccc---cc--cC-----CchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 412 KILLQLQPEVTFV---DV--AC-----TSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 412 ~~~~~~~~~~~~~---~~--~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
.+.++.-...... .. .+ -...+.-+...+..+|..+.|..+++-+.+.++..
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence 6555421110000 00 01 12233455556778999999999999999888733
No 392
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.00 E-value=82 Score=23.40 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHH
Q 011587 124 TLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLF 203 (482)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~ 203 (482)
..++|..|.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|-+|- -.+ .|..+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~k-----lGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWK-----LGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHH-----CT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHh-----hccHHHHHHHH
Confidence 48899999999988763 33444445556788999999996666666778888887764 345 78888888888
Q ss_pred HHhh
Q 011587 204 RDML 207 (482)
Q Consensus 204 ~~m~ 207 (482)
.++-
T Consensus 93 ~rla 96 (116)
T PF09477_consen 93 TRLA 96 (116)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8774
No 393
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.93 E-value=32 Score=21.69 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.-++.+.|++++|.+..+.+++..|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 45578999999999999999999998
No 394
>PRK10941 hypothetical protein; Provisional
Probab=55.62 E-value=85 Score=28.02 Aligned_cols=61 Identities=18% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+.+-.+|.+.++++.|.++.+.++...| .++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P--------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP--------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45666778999999999999999999999 67777777777899999999998877766543
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.49 E-value=2.4e+02 Score=29.18 Aligned_cols=183 Identities=14% Similarity=0.167 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-CCHH----------HHHHHHHHHHhcCCh
Q 011587 234 EFGACVHGYMEKTFYMP-ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVL----------TWTAMATGMAIHGKG 301 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~~~ 301 (482)
++-..++.+|...--.| -....+...++-.|....+++...++.+.+.. ||.. .|...++---+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 34456677777654322 12344566778888888999999999888875 3221 122223222345778
Q ss_pred HHHHHHHHHHHhC--CCCCCHHH-----HHH--HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-C
Q 011587 302 NEAIRLLDSMRDC--GVKPNAVT-----FTS--LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-H 371 (482)
Q Consensus 302 ~~a~~~~~~m~~~--g~~p~~~~-----~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~ 371 (482)
++|+...-.|.+. .+.||... |.- +-+.|...+..+.|.++|++.-+ ++|+..+--.+...+...| +
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhh
Confidence 8888887777654 24565432 221 12234556677888888877654 5666543222222222223 2
Q ss_pred HHHHHHHH------HcC-CCCCCHH---HH---HHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 372 LEEAYNFI------MGI-PIKPDAI---LW---RSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 372 ~~~A~~~~------~~~-~~~p~~~---~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...++- ... |.+-... .| ...+.+-.-..|+.+|.+..+.|.++.+
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 32222211 111 2221111 11 1122333456899999999999999988
No 396
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.19 E-value=62 Score=28.08 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=75.8
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCH-HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHH-HHHHHHhcCCHhH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHI-KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRS-LLSACNVHGDVAL 406 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~ 406 (482)
|.....++.|...|.+... +.|+. .-|+.-+..+.+..+++.+..--.+. .+.||..--.. +..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 5556778888887777765 35666 44556667777888888875544433 66776654443 3444567788999
Q ss_pred HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 407 GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 407 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
|...+.++..+..+-. +.+-......|..+-.+.=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~---~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQP---FTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCC---CCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 9999999866544211 12444555566555444444455566665543
No 397
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.60 E-value=71 Score=32.13 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCcH
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDC--GVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
.|+.+|..+|++-.+.++++.+... |-+.-...||..|..+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666543 2222334556666666666654
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.44 E-value=88 Score=23.31 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777665
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.25 E-value=1.6e+02 Score=26.30 Aligned_cols=87 Identities=9% Similarity=-0.044 Sum_probs=46.0
Q ss_pred HHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHH
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALV 261 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li 261 (482)
|.+++. .++|.+++...-+-- +..-+........-|-.|.+.+.+..+.++-..-+...- ..+..-|.+++
T Consensus 90 IQALAE-----mnrWreVLsWvlqyY--q~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~--Nq~lp~y~~va 160 (309)
T PF07163_consen 90 IQALAE-----MNRWREVLSWVLQYY--QVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS--NQSLPEYGTVA 160 (309)
T ss_pred HHHHHH-----HhhHHHHHHHHHHHh--cCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc--cCCchhhHHHH
Confidence 566777 777777765443332 222222233444455556777777776666655554332 22333355544
Q ss_pred HHH-----HcCCChHHHHHHH
Q 011587 262 DMY-----SKCGCLDNALLIF 277 (482)
Q Consensus 262 ~~~-----~~~g~~~~A~~~~ 277 (482)
..| .-.|.+++|+++.
T Consensus 161 ELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 161 ELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhccccHHHHHHHH
Confidence 444 3356666666665
No 400
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.19 E-value=99 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
++|...|++..+ ..|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 344444444443 245666666555544
No 401
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.77 E-value=79 Score=26.10 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCCCCH-HHHHHHHHHHHhcC----C-------HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 383 PIKPDA-ILWRSLLSACNVHG----D-------VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 383 ~~~p~~-~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
.+.|+. .++..+..+|...+ + +++|...|+++...+| +..+|..-+.... +|-
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P---------~ne~Y~ksLe~~~------kap 127 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP---------NNELYRKSLEMAA------KAP 127 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T---------T-HHHHHHHHHHH------THH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC---------CcHHHHHHHHHHH------hhH
Confidence 566753 56666666655433 3 4556666666666665 7788887777653 355
Q ss_pred HHHHHhHhcCC
Q 011587 451 SVRKQMKVKRV 461 (482)
Q Consensus 451 ~~~~~m~~~~~ 461 (482)
++..++.+++.
T Consensus 128 ~lh~e~~~~~~ 138 (186)
T PF06552_consen 128 ELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHHh
Confidence 66666655543
No 402
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.66 E-value=3.5e+02 Score=29.70 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcCC-CCCCHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGIP-IKPDAILWRSLL 395 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 395 (482)
.-|..+++.+-..+-.+.+.++-..+.+ .++++ ..+++.+.+.....|.+-+|...+-... ...-......++
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3467778888888888888888777777 34433 4567778888888999998877776542 111234566677
Q ss_pred HHHHhcCCHh------------HHHH-HHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 396 SACNVHGDVA------------LGEK-VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 396 ~~~~~~g~~~------------~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
..++.+|..+ +.+. +++..-+..+ .-....|..|-..+...++|.+|-.+
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~-------~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSP-------SMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCc-------cccccHHHHHHHHHHhhcchhHHHHH
Confidence 7777777654 3344 3443444444 13345666777777888998888765
No 403
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.60 E-value=1.6e+02 Score=25.59 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=63.1
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHhc--cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGR--AGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
...++....+++++ .|..+++++.- .+++++|.+.+-+-.+.|+.... ++.++...|+.+.|..+++.+ +
T Consensus 64 ~~~~~Fa~~f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~---~ 135 (226)
T PF13934_consen 64 ELAESFARAFGIPP---KYIKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAV---G 135 (226)
T ss_pred cHHHHHHHHhCCCH---HHHHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhc---C
Confidence 33444444456665 45566777764 46788999998776555554333 677777789999999988853 3
Q ss_pred CCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 419 PEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
|.. .+......+..+ ...+.+.||..+.+...
T Consensus 136 p~l------~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 136 PPL------SSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred CCC------CCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 310 233333344444 55677888877655544
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.25 E-value=65 Score=23.04 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..-++..++.+| .|...-..+...+...|++++|++.+-++.+..-
T Consensus 8 ~~al~~~~a~~P--------~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANP--------DDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHST--------T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 345666777888 7888999999999999999999999888876653
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.13 E-value=31 Score=22.55 Aligned_cols=30 Identities=3% Similarity=0.028 Sum_probs=23.6
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 429 TSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
|..-...++.+|...|++++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556889999999999999999988763
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.48 E-value=74 Score=22.83 Aligned_cols=57 Identities=5% Similarity=0.033 Sum_probs=37.8
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCC-----chhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACT-----SEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..+.||+..|.+.+.+.......-. .+. ......+.......|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~----~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN----NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc----cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567999999777777665433100 011 22333566678889999999999988764
No 407
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.25 E-value=77 Score=24.74 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=42.0
Q ss_pred CcCHHHHHHHHHHHhccCCHH---HHHHHHHcC-C-CCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLE---EAYNFIMGI-P-IKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.++..+--.+..++.+..+.+ +.+.++++. . -.| .....--|.-++.+.|+++++.++.+.+++..|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 455566666666776665443 445666655 2 234 233444455667788888888888888887776
No 408
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=50.81 E-value=87 Score=22.14 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP 171 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 171 (482)
....|...++...... .+++ ++|+-....|+..|+.+|..+++...-.=..+...++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls----~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS----AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccC----HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4445555554433333 2333 788888888888888888888887766556666666666654
No 409
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.92 E-value=1.7e+02 Score=26.55 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=55.6
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----------CCC
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS----------NKD 159 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~ 159 (482)
.++++.|.+.++.| .-+++.-+.-.+.+.= . +..+..+++.+..- ..-|..|+..||. .|+
T Consensus 263 ~EL~~~L~~~~i~P-qfyaFRWitLLLsQEF-~--lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~D 333 (370)
T KOG4567|consen 263 EELWRHLEEKEIHP-QFYAFRWITLLLSQEF-P--LPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGD 333 (370)
T ss_pred HHHHHHHHhcCCCc-cchhHHHHHHHHhccC-C--chhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777788888888 8888777777777766 7 88888888888743 2236666666654 578
Q ss_pred hhHHHHHhccCCCCCchh
Q 011587 160 ISSGKKVFDQMPMRSSAT 177 (482)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (482)
+....++++.-+.-|...
T Consensus 334 F~~nmkLLQ~yp~tdi~~ 351 (370)
T KOG4567|consen 334 FTVNMKLLQNYPTTDISK 351 (370)
T ss_pred hHHHHHHHhcCCCCCHHH
Confidence 888888887766545443
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.63 E-value=46 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=7.4
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~ 310 (482)
|.+|...|++++|.++++.
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3344444444444444433
No 411
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.25 E-value=44 Score=30.06 Aligned_cols=45 Identities=4% Similarity=-0.135 Sum_probs=35.0
Q ss_pred CCCCcCHHH-HHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHH
Q 011587 211 SGVKPTDTT-MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIG 257 (482)
Q Consensus 211 ~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 257 (482)
..+.||..+ |+..|....+.||+++|.++++++++.|. ..-..+|
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~--~~Ar~tF 295 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGS--TSARSTF 295 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--chHHHHH
Confidence 345666665 56899999999999999999999999997 4444443
No 412
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.15 E-value=2.1e+02 Score=26.01 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhccCCHHHH
Q 011587 356 IKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A 375 (482)
...|.-|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34667777777777777655
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.14 E-value=2.5e+02 Score=26.90 Aligned_cols=104 Identities=11% Similarity=0.013 Sum_probs=52.4
Q ss_pred CChHHHHHHhhcCCCCChhh---HHHHhcCCCCccHHHHHHHHHHCCCCCCChh--hHHHHHHHhhhccCcchhhhHHHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFL---FNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF--TYVFALGSCARFCSLSTLWLGRQI 131 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~---~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~~ll~~~~~~~~~~~~~~a~~~ 131 (482)
|+.+.+..+++....++... ++.+..+-. ..-.++.+.+.+.|..| +.. ...+.+...+..| + .+.+..+
T Consensus 13 g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g-~--~~~v~~L 87 (413)
T PHA02875 13 GELDIARRLLDIGINPNFEIYDGISPIKLAMK-FRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEG-D--VKAVEEL 87 (413)
T ss_pred CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHH-cCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCC-C--HHHHHHH
Confidence 88999999988776554322 222222211 13377888888888765 432 1223344445555 5 5544444
Q ss_pred HHHHHHhCCCCchh---HHHHHHHHHHhCCChhHHHHHhcc
Q 011587 132 HVHVTKRGFMFNVL---VATTLIHFYASNKDISSGKKVFDQ 169 (482)
Q Consensus 132 ~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 169 (482)
.+.|...+.. .-.+.+...+..|+.+-+..+++.
T Consensus 88 ----l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ 124 (413)
T PHA02875 88 ----LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR 124 (413)
T ss_pred ----HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 3444221110 011233344455666555555544
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.71 E-value=86 Score=24.87 Aligned_cols=63 Identities=13% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
++.+.+++.|.+++..-. .++..+...++.-.|.++++.+.++ +...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 344556667776665433 4666666666768888888888874 65555555555555555555
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.61 E-value=1.2e+02 Score=28.95 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=26.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhc-----CCC-cCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 324 TSLFAACCHAGLVEEGLHLFDNMKSKW-----GVE-PHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 324 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
..|++.++-.||+..|.++++.+.-.. .++ ....++--+.-+|.-.+++.+|.+.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666655555443210 000 11223333444455555555555555554
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.59 E-value=38 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 323 (482)
-|+..|..-.+.||+++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4567788888888888888888888888766333344
No 417
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=48.43 E-value=2.2e+02 Score=26.11 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=25.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHH
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFI 379 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 379 (482)
+.-+-.+.|+..+|.+.++.+.+...+..-...-..|++++....-+.+...++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566666666666666653111111122334555555554444444443
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.12 E-value=63 Score=19.79 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHH
Q 011587 125 LWLGRQIHVHVTKRGFMFNVLVATTLIH 152 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 152 (482)
.+++..+++.|.+.|+.-+...|..++.
T Consensus 18 I~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred hhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 7788888999988888888888777765
No 419
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.07 E-value=90 Score=24.03 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCChhHHHHHhc
Q 011587 127 LGRQIHVHVTKRGFMFN-VLVATTLIHFYASNKDISSGKKVFD 168 (482)
Q Consensus 127 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 168 (482)
...++|..|.+.|+-.. +..|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35667777777776543 4456677777777777777777775
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.84 E-value=3.1e+02 Score=27.75 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 305 IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 305 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
...++.+..+-...+......++..|.+.|-.+.|.++.+.+-.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344444332333455556666666666666666666665555
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=47.36 E-value=85 Score=22.53 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=31.2
Q ss_pred hccCCHHHHHHHHHcC------CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGI------PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~------~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.|++.+|.+.+.+. ...+. ....-.+.......|+.++|...++++++.-.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3566777775555443 11111 12222244456678899999999998887544
No 422
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.74 E-value=2.3e+02 Score=25.89 Aligned_cols=82 Identities=21% Similarity=0.004 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhHHhcCC---CcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGV---EPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
.+.|.+.|+.......- ..+...-..++....+.|..+.-..+++...-.++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 44555556655552011 223344444455555555544433344333323455555566666666666666666666
Q ss_pred HHHhc
Q 011587 413 ILLQL 417 (482)
Q Consensus 413 ~~~~~ 417 (482)
.+...
T Consensus 226 ~~l~~ 230 (324)
T PF11838_consen 226 LLLSN 230 (324)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 66653
No 423
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=46.55 E-value=4.2e+02 Score=28.78 Aligned_cols=261 Identities=9% Similarity=0.039 Sum_probs=132.0
Q ss_pred HHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHH-------HHHHhhccCc---hHHHHHHHHHHHHhCCCCC
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC-------VLSVSSQLGL---LEFGACVHGYMEKTFYMPE 251 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~-------l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~ 251 (482)
=.++.. .+.++.|+..|+++. ...+.-...|.+ ++.-....|+ +++|..-|+.+... +
T Consensus 482 ~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 549 (932)
T PRK13184 482 PDAFLA-----EKLYDQALIFYRRIR---ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG----V 549 (932)
T ss_pred cHHHHh-----hHHHHHHHHHHHHHh---hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC----C
Confidence 356666 889999999999995 333333333332 2333333444 44555555554432 2
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C--------------------CHHHHHHHHHHHHh---cCChHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K--------------------NVLTWTAMATGMAI---HGKGNE 303 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~--------------------~~~~~~~li~~~~~---~~~~~~ 303 (482)
.-+--|-.-.-+|-+.|++++-.+.+.-..+ | ...+|..|+-+... .-...+
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 550 GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSRE 629 (932)
T ss_pred CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchH
Confidence 2334455556678888888877776654432 1 11233333332221 111223
Q ss_pred HHHHHHHHHhCC------------------------------------------CCCCHHHHHHHHHHHhccCcHHHHHH
Q 011587 304 AIRLLDSMRDCG------------------------------------------VKPNAVTFTSLFAACCHAGLVEEGLH 341 (482)
Q Consensus 304 a~~~~~~m~~~g------------------------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~ 341 (482)
-.++|+.+..+- ..++-.+..-++...+..|+++-+.+
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (932)
T PRK13184 630 EEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQ 709 (932)
T ss_pred HHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHH
Confidence 334444443221 01122222333334456777777666
Q ss_pred HHHHhHHh---cCCCcCH--------HHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 342 LFDNMKSK---WGVEPHI--------KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 342 ~~~~~~~~---~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
..+.+.+. ...+-+. ..|-.=+.++.....++++.+.+.......-...+..++.-+.-.++.+....+
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 710 FSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 66665531 1111111 112222455556667777776555542111233444455555556666666666
Q ss_pred HHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 411 GKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+.+.....+. .-.......-+.+|.-..+|++|.+++......
T Consensus 790 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (932)
T PRK13184 790 LQLIYDYVSEE-----ERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLD 833 (932)
T ss_pred HHHHHhccCCh-----hhhhhhhHHHHHHHHHhccHHHHHHHHHhCChh
Confidence 66655544410 011233346677888888999999988665433
No 424
>PRK02287 hypothetical protein; Provisional
Probab=46.41 E-value=1.6e+02 Score=24.09 Aligned_cols=61 Identities=16% Similarity=0.045 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAIL-WRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
..+..++..++.-.|..+.|.++++.....++-.. -..++..|.++.+.++..++-++.+.
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~ 168 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLG 168 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44667777788888888888888887754444333 34577888888887777776666554
No 425
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.90 E-value=97 Score=29.50 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE-----------KNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
....|++.++-.||+..|+++++.+.- -.+.+|-.+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999988752 245677888889999999999999998764
No 426
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=45.64 E-value=2.5e+02 Score=26.00 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA-IRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
-.+.+.+++.++-+.+..+-+.+..-...+..++..++-...-.+.. ..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 34566777777776666666666554445555565555444433333 3344444443 7888888888888877766
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHhccCCHHHHHHHHHcCCCCCCHHHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIV-DLLGRAGHLEEAYNFIMGIPIKPDAILWRSL 394 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 394 (482)
......+..+... ....+......+. +.+.-..+.+.+..++++.-..+|...|+.+
T Consensus 247 ~~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~ql 304 (340)
T PF12069_consen 247 DLVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQL 304 (340)
T ss_pred hHHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHH
Confidence 6666656666663 3333444333332 2222233444455555555323334444443
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=45.63 E-value=76 Score=31.46 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=66.6
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
..|+...|...+...... .-.........|.....+.|....|-.++.+. .+ ...+.++-.+..++.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777788777766542 21122334445566666667777776666544 22 2345566777888888899999999
Q ss_pred HHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 410 VGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
.|+.+.++.+ .+.+.-+.|...-+
T Consensus 698 ~~~~a~~~~~--------~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTT--------KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCC--------CChhhHHHHHHHHH
Confidence 9999999888 66777666655433
No 428
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.46 E-value=2.8e+02 Score=28.16 Aligned_cols=84 Identities=8% Similarity=-0.039 Sum_probs=63.3
Q ss_pred hccCCHHHHHHHHHcC-CCCC-C------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-D------AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
.+..++..+.++|..- ..-| | ...+..|.-+|....+.+.|.++++++.+.+| .++-+-..+..
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~--------~~~l~q~~~~~ 436 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR--------QSPLCQLLMLQ 436 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc--------ccHHHHHHHHH
Confidence 3556777788877643 2112 2 34566777778888999999999999999888 67777777888
Q ss_pred HHHhCCCchHHHHHHHHhHh
Q 011587 439 IYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~ 458 (482)
+....|..++|.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHhcchHHHHHHHHHHHh
Confidence 88889999999988777654
No 429
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.44 E-value=4.4e+02 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHcCC--ChHHHHHHHHhccCC
Q 011587 253 DVFIGTALVDMYSKCG--CLDNALLIFSRMREK 283 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 283 (482)
.......++.+|.+.+ ++++|+.+..++.+.
T Consensus 811 ~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 811 KDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred chhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3444556666666666 666666666666544
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.95 E-value=1.5e+02 Score=24.56 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHhccCcHHHHHHHHHHhHH
Q 011587 329 ACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555554
No 431
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.54 E-value=1.5e+02 Score=24.55 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHHhcCCCcC-HH-----HHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 011587 336 VEEGLHLFDNMKSKWGVEPH-IK-----HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGD 403 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~-~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 403 (482)
.+.|..+|+.+.+.+..+-+ .. .-...+-.|.+.|.+++|.+++++.--.|+......-+....+.+|
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
Confidence 56778888888774222111 11 1223355788999999999999988226666655555555555444
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.31 E-value=1.6e+02 Score=22.71 Aligned_cols=44 Identities=5% Similarity=-0.041 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHh
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
....+|..|.+.++. ..-...|......+-..|++.+|.++|+.
T Consensus 81 dp~~if~~L~~~~IG-~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIG-TKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 356789999888874 34455677788888888999999888863
No 433
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.04 E-value=2.2e+02 Score=24.42 Aligned_cols=97 Identities=10% Similarity=-0.042 Sum_probs=53.9
Q ss_pred HhccCCHHHHHHHHHcC-------CCCCCHH--HHHHHHHHHHhcCCH-------hHHHHHHHHHHhcCCCcccccccCC
Q 011587 366 LGRAGHLEEAYNFIMGI-------PIKPDAI--LWRSLLSACNVHGDV-------ALGEKVGKILLQLQPEVTFVDVACT 429 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-------~~~p~~~--~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~ 429 (482)
|.....+++|.+.+.-. +.+|... .+--+...|...|+- ..|.+.|.++.+....... -...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~--~~~~ 164 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE--GMDE 164 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC--CchH
Confidence 33444555555443322 3334432 333344456666663 3556666666654431000 0022
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccC
Q 011587 430 SEDFVALSNIYASAERWPDVESVRKQMKVKRVETE 464 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 464 (482)
....-.+.....+.|++++|.+.|.++...+-.+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34445677788899999999999999986655444
No 434
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.96 E-value=81 Score=20.93 Aligned_cols=51 Identities=14% Similarity=-0.015 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 281 REKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 281 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
..+....++.++..+++..-.++++..+.+....|. .+..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345556677777777777777777777777777764 355555555555544
No 435
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.79 E-value=31 Score=22.89 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 385 KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 385 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.|....++.++..+++..-.+.+...+.++...|. .+..+|.--++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--------I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--------IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------S-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHHH
Confidence 35666778888888888888888888888888887 67777777777666543
No 436
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.68 E-value=2.8e+02 Score=27.29 Aligned_cols=95 Identities=9% Similarity=-0.038 Sum_probs=54.1
Q ss_pred HHHHHHHHH-HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 303 EAIRLLDSM-RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 303 ~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
+..+.++.. ...|+..+......++.. ..|++..|+.+++++... + ....++..+ .+++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~-~--~~~it~~~V-------------~~~l-- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVF-T--DSKLTGVKI-------------RKMI-- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHh-C--CCCcCHHHH-------------HHHh--
Confidence 344444443 335666666666555543 347777788777776541 1 011122222 1111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 382 IPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 382 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|. .+...+..++.+....+....|..++.++.+.|.
T Consensus 244 -g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~ 279 (484)
T PRK14956 244 -GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQ 279 (484)
T ss_pred -CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCC
Confidence 32 3566666677776665566789999999998887
No 437
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.21 E-value=3.6e+02 Score=26.55 Aligned_cols=102 Identities=7% Similarity=-0.083 Sum_probs=52.5
Q ss_pred HhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHH
Q 011587 33 TNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFA 112 (482)
Q Consensus 33 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~l 112 (482)
..|+.-+......++... . |+...+...++.+.. | ..+. -..+....+.. .. .......+
T Consensus 191 ~egi~i~~eal~~Ia~~s--~---GdlR~aln~Le~l~~-----~----~~~~--It~e~V~~~l~--~~--~~~~i~~l 250 (472)
T PRK14962 191 AEGIEIDREALSFIAKRA--S---GGLRDALTMLEQVWK-----F----SEGK--ITLETVHEALG--LI--PIEVVRDY 250 (472)
T ss_pred HcCCCCCHHHHHHHHHHh--C---CCHHHHHHHHHHHHH-----h----cCCC--CCHHHHHHHHc--CC--CHHHHHHH
Confidence 447776666666666533 2 788888877765321 0 0011 11222222222 22 23444555
Q ss_pred HHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 011587 113 LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNK 158 (482)
Q Consensus 113 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 158 (482)
+++... + + .+.|..++..+...|..|....-..+..++-.-|
T Consensus 251 i~si~~-~-d--~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 251 INAIFN-G-D--VKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred HHHHHc-C-C--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 555432 3 4 7888888888888877766544333333333333
No 438
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.17 E-value=1.4e+02 Score=27.05 Aligned_cols=52 Identities=8% Similarity=0.099 Sum_probs=30.9
Q ss_pred HHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhh
Q 011587 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207 (482)
Q Consensus 149 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~ 207 (482)
.++..+.+.++.....+.++.+. ....-...+..+.. .|++..|++++.+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~-----~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLE-----EGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 34455555555555555555553 33334445566666 788888888877765
No 439
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.74 E-value=4.7e+02 Score=27.74 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhccCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC-C
Q 011587 6 GHRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC-T 84 (482)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~-~ 84 (482)
|..|.-.++... |+.++...+-..+.... .++..+... +.+++|++++.....|...---+-+-- .
T Consensus 506 nretv~~l~~~~-~~~e~ll~fA~l~~d~~---------~vv~~~~q~---e~yeeaLevL~~~~~~el~yk~ap~Li~~ 572 (911)
T KOG2034|consen 506 NRETVYQLLASH-GRQEELLQFANLIKDYE---------FVVSYWIQQ---ENYEEALEVLLNQRNPELFYKYAPELITH 572 (911)
T ss_pred hHHHHHHHHHHc-cCHHHHHHHHHHHHHHH---------HHHHHHHHH---HHHHHHHHHHHhccchhhHHHhhhHHHhc
Q ss_pred CCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC--CChhH
Q 011587 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASN--KDISS 162 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~ 162 (482)
.+.+.+..+..+.... ...-...++..+.+.+.......+...++.....--.-++..+|.++..|++. .+.-.
T Consensus 573 ~p~~tV~~wm~~~d~~----~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~ 648 (911)
T KOG2034|consen 573 SPKETVSAWMAQKDLD----PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLL 648 (911)
T ss_pred CcHHHHHHHHHccccC----chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHH
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHH
Q 011587 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242 (482)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (482)
=.+.-..+......-..-.++.|.+ .+.-..++.++..|. .|...+....+.. .+.|...-..
T Consensus 649 ~le~~~~~~~~~~YDl~~alRlc~~-----~~~~ra~V~l~~~l~-----------l~~~aVdlAL~~d-~dlak~~A~~ 711 (911)
T KOG2034|consen 649 YLEIIKFMKSRVHYDLDYALRLCLK-----FKKTRACVFLLCMLN-----------LFEDAVDLALQFD-IDLAKVIAND 711 (911)
T ss_pred HHHHHhhccccceecHHHHHHHHHH-----hCccceeeeHHHHHH-----------HHHHHHHHHhhcC-HHHHhhhhcC
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHh
Q 011587 243 MEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSR 279 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 279 (482)
..... ...-..|-.+...+.+.. ++.+|++++..
T Consensus 712 ~ee~e---~lrKkLWLkIAkh~v~~~~~ikk~i~~Lk~ 746 (911)
T KOG2034|consen 712 PEEDE---DLRKKLWLKIAKHVVKQENDIKKAIRFLKE 746 (911)
T ss_pred hhhHH---HHHHHHHHHHHHHHHHhhccHHHHHHHhcc
No 440
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.47 E-value=2.3e+02 Score=28.74 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
+.....-++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+...+..+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~----~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL----KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445556666667777766666666666554432 23345566666677777666555544443
No 441
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=2.5e+02 Score=24.55 Aligned_cols=110 Identities=11% Similarity=-0.167 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH-HHHHHHHHHHHhcCChHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV-LTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~ 307 (482)
.+++.|..-|.+.+... |....-|..-+..+.+..+++.+..=-++..+ ||. ...-.+..+......++.|+..
T Consensus 24 k~y~~ai~~y~raI~~n---P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICIN---PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHhcC---CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34444444443333332 22233344455555555555555444444332 222 2333344445555666666666
Q ss_pred HHHHHh----CCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 308 LDSMRD----CGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 308 ~~~m~~----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
+.+... ..+.|.......|..+--+.-...+..++.
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 655522 223333334444444433333333344433
No 442
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.20 E-value=2.4e+02 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=9.7
Q ss_pred HHHHhccCCHHHHHHHHHcC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~ 382 (482)
|......|+.++|.+.....
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33444455555555555444
No 443
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.03 E-value=3e+02 Score=25.34 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc---CCChHH
Q 011587 196 AFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK---CGCLDN 272 (482)
Q Consensus 196 ~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~---~g~~~~ 272 (482)
.+.-+.+|++.. .. .+.+.......+..+.+..+.+...+-++.++... +.+...|...++.... .-.++.
T Consensus 47 ~E~klsilerAL--~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~---~~~~~LW~~yL~~~q~~~~~f~v~~ 120 (321)
T PF08424_consen 47 AERKLSILERAL--KH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN---PGSPELWREYLDFRQSNFASFTVSD 120 (321)
T ss_pred HHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHhccCcHHH
Confidence 445667777765 33 23455566677778888778888888888888776 5577777777765543 234556
Q ss_pred HHHHHHhc
Q 011587 273 ALLIFSRM 280 (482)
Q Consensus 273 A~~~~~~~ 280 (482)
+..+|.+.
T Consensus 121 ~~~~y~~~ 128 (321)
T PF08424_consen 121 VRDVYEKC 128 (321)
T ss_pred HHHHHHHH
Confidence 65555544
No 444
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=39.64 E-value=1.7e+02 Score=23.12 Aligned_cols=63 Identities=16% Similarity=0.009 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 372 LEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 372 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
-+.|.++.+-|| .....-.........|++..|..+.+.++..+| .|...-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp--------~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADP--------DNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHHHH
Confidence 456777777775 333344445566778999999999999999999 677887788887776654
No 445
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=39.18 E-value=5e+02 Score=27.59 Aligned_cols=60 Identities=10% Similarity=0.005 Sum_probs=33.9
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCCC--CCchhHH--HHHHHHHHcCCChHHHHHHHHhcc
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYMP--ENDVFIG--TALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
.++......|+.++|...+.++......+ ..+...- ..-+......|+...+.....+-.
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 55666777888888888777777654422 1122111 112223345677777666666544
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.15 E-value=1.8e+02 Score=23.05 Aligned_cols=44 Identities=16% Similarity=0.034 Sum_probs=22.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
.++..+.+.++.-.|.++++++.+.+...+..|.-..+..+...
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 34444444555555666666666555544444444444444433
No 447
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.06 E-value=2.8e+02 Score=24.65 Aligned_cols=104 Identities=8% Similarity=-0.096 Sum_probs=57.5
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcCCCCccH----HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRCTPPQDS----VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a----~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 132 (482)
+.+++|.+++... -..+++.|....| .-+.+...+.+... +......++..+...+.. -..-..+.
T Consensus 4 kky~eAidLL~~G-------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~-~~~~~~rl~~l~~~~~~~--~p~r~~fi 73 (260)
T PF04190_consen 4 KKYDEAIDLLYSG-------ALILLKHGQYGSGADLALLLIEVYEKSEDPV-DEESIARLIELISLFPPE--EPERKKFI 73 (260)
T ss_dssp T-HHHHHHHHHHH-------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT---TTHHHHH
T ss_pred ccHHHHHHHHHHH-------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCC--cchHHHHH
Confidence 6677777776543 2334444444333 33444445556666 777777777777766522 22344555
Q ss_pred HHHHHh---CCC--CchhHHHHHHHHHHhCCChhHHHHHhccC
Q 011587 133 VHVTKR---GFM--FNVLVATTLIHFYASNKDISSGKKVFDQM 170 (482)
Q Consensus 133 ~~~~~~---~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 170 (482)
+.+++. |-. -++.....+...|.+.|++.+|+..|-.-
T Consensus 74 ~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 74 KAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 555542 222 26778888889999999999998877443
No 448
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.05 E-value=3e+02 Score=25.01 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=47.8
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCc-----hHHHHHHHHHHHHhCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL-----LEFGACVHGYMEKTFY 248 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 248 (482)
+...+-.+|+++.++-+ ..+++.|+-.+-+|. +.|..|....-..++-++-..|. ...|...++.....|.
T Consensus 122 ~gd~HYd~iSAf~KSiR--GSDpDAAlYyLArml--~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVR--GTDPDAAIFWLSVML--DNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhh--cCCccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33344445777777544 678888999999998 88888877777777777766663 3344455555555664
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.39 E-value=1.3e+02 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHHHcCCChHHHHHHHHhc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~ 280 (482)
-+...|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555555555555554
No 450
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.21 E-value=2e+02 Score=25.31 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRD----CG-VKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556666667666666666531 12 123334445555555566666555544333
No 451
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.15 E-value=3.5e+02 Score=25.49 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
|-.+.+...+-..+...|+.+.|.+++++..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666777777888888887777776553
No 452
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=37.71 E-value=1.7e+02 Score=24.87 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=55.9
Q ss_pred CHHHHHHHHHcCCCC----------CCHHHHHHHHHHHHhcC---------CHhHHHHHHHHHHhcCCCcccccccCCch
Q 011587 371 HLEEAYNFIMGIPIK----------PDAILWRSLLSACNVHG---------DVALGEKVGKILLQLQPEVTFVDVACTSE 431 (482)
Q Consensus 371 ~~~~A~~~~~~~~~~----------p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
..+.|..++..||.. ....-|..+..+|++.| +.+.-..+++..++.|.+ +.-++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~------kviPH 209 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVE------KVIPH 209 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCC------eeccc
Confidence 356677777777311 13455677777777766 566677788888888873 23467
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 432 DFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.|.++++--.-.-+.++..+++..++
T Consensus 210 IYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 210 VYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cceeccccccCCCCHHHHHHHHHHhh
Confidence 88888876666667888888887765
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.38 E-value=1.6e+02 Score=24.10 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=33.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 311 MRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 311 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+...|++++..-. .++..+...++.-.|.++++.+.+. +..++..|...-++.+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3445665554433 3444444445566677777777764 5555655555555666665544
No 454
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=3.1e+02 Score=24.66 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=104.7
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHH-------HHHHHHHHhhccCchHHHHHHHHH----HHHhCCCCCCchhHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDT-------TMVCVLSVSSQLGLLEFGACVHGY----MEKTFYMPENDVFIGTALV 261 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~p~~~~~~~~~li 261 (482)
.+++++|+..|.++. ..|+..|.. +...+...|...|+.....+.... |....- +....+..+|+
T Consensus 16 ~~~~~~ai~~yk~iL--~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk--~k~~KiirtLi 91 (421)
T COG5159 16 SNDIEKAIGEYKRIL--GKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK--PKITKIIRTLI 91 (421)
T ss_pred hhhHHHHHHHHHHHh--cCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc--hhHHHHHHHHH
Confidence 788999999999998 778776654 445677778888887665544433 222222 44556667777
Q ss_pred HHHHcC-CChHHHHHHHHhccC----CC-----HHHHHHHHHHHHhcCChHHHHHHHH----HHHhCCCCCCHHHHHHHH
Q 011587 262 DMYSKC-GCLDNALLIFSRMRE----KN-----VLTWTAMATGMAIHGKGNEAIRLLD----SMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 262 ~~~~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~~~~ll 327 (482)
..+-.. ..++..+.+.....+ .. ...-..++..+.+.|.+.+|+.+.. ++++..-+|+..+...+=
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllE 171 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLE 171 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhh
Confidence 766544 346666666665543 11 1223456778889999999887665 445556667665543322
Q ss_pred -HHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHHHHHHHHHh--ccCCHHHHHHHHHcC
Q 011587 328 -AACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHYSCIVDLLG--RAGHLEEAYNFIMGI 382 (482)
Q Consensus 328 -~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 382 (482)
.+|-..+++.++..-+...... --++|-...---|+.+-. .-.++..|...|-+.
T Consensus 172 SKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea 232 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEA 232 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHH
Confidence 2444444554444444333321 012333333333333332 233455565555444
No 455
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.45 E-value=46 Score=34.60 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.+|..|.....+.|+.+-|+-.|++.
T Consensus 673 d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 673 DVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 34555555555555555554444443
No 456
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.33 E-value=4.1e+02 Score=25.72 Aligned_cols=61 Identities=15% Similarity=-0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 392 RSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 392 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..|+.-|...|++.+|.+..+++---.. -....+..++.+..+.|+-+....++++.-+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfF--------hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFF--------HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4455556666666666666553321111 234455566666666666555555555444333
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.11 E-value=3.9e+02 Score=25.47 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.6
Q ss_pred CcHHHHHHHHHHhHH
Q 011587 334 GLVEEGLHLFDNMKS 348 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~ 348 (482)
+++....++++++..
T Consensus 318 sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 318 SKYASCLELLREIKP 332 (466)
T ss_pred hhHHHHHHHHHHhcc
Confidence 567777777777765
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.86 E-value=3.3e+02 Score=24.57 Aligned_cols=102 Identities=8% Similarity=0.063 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHHHH-HHHHHhccCCHHHHHHHHHcC---CCC---
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHYSC-IVDLLGRAGHLEEAYNFIMGI---PIK--- 385 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~---~~~--- 385 (482)
-.-....+..+...|++.++.+.+.++..+..++ .|.+.|.....+ |.-.|....-.++.++..+.| |-.
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 3334556777788888888888888777665543 245544332221 112222332334444444444 211
Q ss_pred -CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 386 -PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 386 -p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.--.+|..+- +....++.+|-.++...+.-..
T Consensus 191 rNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 191 RNRYKVYKGIF--KMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhhHHHHHHHH--HHHHHhhHHHHHHHHHHhcccc
Confidence 1223444332 3345678888888877776555
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.62 E-value=2.7e+02 Score=23.42 Aligned_cols=178 Identities=14% Similarity=0.120 Sum_probs=85.2
Q ss_pred CCCCCCChhhHHHHHHHhhhccC-cchhhhHHHHHHHHHHhCCCCch----hHHHHHHHHHHhCCChhHHHHHhccCCCC
Q 011587 99 KGLLTFDDFTYVFALGSCARFCS-LSTLWLGRQIHVHVTKRGFMFNV----LVATTLIHFYASNKDISSGKKVFDQMPMR 173 (482)
Q Consensus 99 ~~~~p~~~~~~~~ll~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 173 (482)
.|..+ +...++.+++.+.+... .+..+.+..+-.+....++.++- .....=+..|-+.|||.+.-.+|-.....
T Consensus 2 AGm~l-~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 2 AGMVL-DPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CcccC-CHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Confidence 45566 78888888777766541 12255555555555555554432 23333445677788888888777655421
Q ss_pred -----CchhHHHHH-HHHhcCCc--ccccchHHHHHHHHHhhhccCCCC--cCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 011587 174 -----SSATWNAMI-NGYCSQSK--KAKDCAFNALVLFRDMLVDVSGVK--PTDTTMVCVLSVSSQLGLLEFGACVHGYM 243 (482)
Q Consensus 174 -----~~~~~~~li-~~~~~~~~--~~~~~~~~a~~~~~~m~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 243 (482)
+...+..-+ .++.+..+ +.-.--+-|..+-++-. ...+. +=..+=.+++..|-+.-+|.++.++++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q--~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l 158 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQ--NDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKL 158 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCc--cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111000 00000111222222111 00000 00112235666677777788888888777
Q ss_pred HHhCC--------C-C---CCchhHHHHHHHHHHcCCChHHHHHHHHh
Q 011587 244 EKTFY--------M-P---ENDVFIGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 244 ~~~~~--------~-p---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
.+..+ . | .+.-...|.....+.++|.++.|..++++
T Consensus 159 ~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 159 HELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 66432 0 0 11223445555666666666666666653
No 460
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.40 E-value=3.1e+02 Score=26.82 Aligned_cols=103 Identities=10% Similarity=0.037 Sum_probs=67.1
Q ss_pred HHHHcCCChHHHHHHHHhccC---C---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCC---
Q 011587 262 DMYSKCGCLDNALLIFSRMRE---K---------NVLTWTAMATGMAIHGKGNEAIRLLDSMRD-------CGVKPN--- 319 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~--- 319 (482)
+.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|.+|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567888888888766531 1 122356666666667777777766666542 454442
Q ss_pred --------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh
Q 011587 320 --------AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG 367 (482)
Q Consensus 320 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 367 (482)
..+||.=+ .|...|++-.|.+.|.+... -+..++..|-.|.++|.
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 23455333 35678999999999998887 35567778888888775
No 461
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=35.36 E-value=4.2e+02 Score=25.62 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=48.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGIPIK--PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|+.-|...|+..+|.+.++++|.+ -....+.+++.+.-+.|+-.....+++.....+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456788888999999999999988643 3567888888888888888877788877766554
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.12 E-value=1.9e+02 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhcCCcccccchHHHHHHHHHhh
Q 011587 176 ATWNAMINGYCSQSKKAKDCAFNALVLFRDML 207 (482)
Q Consensus 176 ~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~ 207 (482)
.-|..|+..|.. .|..++|++++.+..
T Consensus 40 ~~~~eL~~lY~~-----kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 40 GKYQELVDLYQG-----KGLHRKALELLKKLA 66 (108)
T ss_pred CCHHHHHHHHHc-----cCccHHHHHHHHHHh
Confidence 357778888887 888888888888875
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.89 E-value=31 Score=31.52 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH-HHHHHHHHHHhcCCH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI-LWRSLLSACNVHGDV 404 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~ 404 (482)
+.+ ...|.++.|++.|...++ .-++....|..-..++.+.+++..|++-+... .+.||.. -|-.=-.+-...|++
T Consensus 122 ~eA-ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 122 SEA-LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHH-hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 344 356889999999999888 44666777777788889999999998877765 5566542 232223344567999
Q ss_pred hHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
++|...++.+.+++. +..+-..+-...-+.+..++-...+++..+
T Consensus 199 e~aa~dl~~a~kld~---------dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY---------DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHHhccc---------cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 999999999999888 455555566666667776666666555543
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.62 E-value=4.8e+02 Score=26.02 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC--CCHHH---HHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE--KNVLT---WTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
..++.-|.+.+++++|..++..|.= ..... .+.+++.+.+..--++.+..++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4566678888888888888877761 12222 3333444444443444444444443
No 465
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.55 E-value=4.2e+02 Score=25.30 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
..+.-+.+.|..+|+++.|.+.|.+... .-+..|-.+|..-...|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3445566667777777777777766542 2233444445555555666666665555544
No 466
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.31 E-value=4.8e+02 Score=25.63 Aligned_cols=339 Identities=10% Similarity=0.036 Sum_probs=181.5
Q ss_pred hhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC--CC-CchhHHHHHHHHHHhCCChhHHHHHhccCCC-CCc--hhHHH
Q 011587 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG--FM-FNVLVATTLIHFYASNKDISSGKKVFDQMPM-RSS--ATWNA 180 (482)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~ 180 (482)
.++..+-..+....+. +..+..++++.++.. .+ ..-.....|+....-..|+..|.+++.-=-+ .|. ..|--
T Consensus 89 ~a~SlLa~lh~~~~~s--~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQS--FPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred HHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 3555666666666534 888999999888753 22 1112234566677778999999998753221 121 12221
Q ss_pred HH----HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH------HHHH--HHHhhccCchHHHHHHHHHHHHh--
Q 011587 181 MI----NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT------MVCV--LSVSSQLGLLEFGACVHGYMEKT-- 246 (482)
Q Consensus 181 li----~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~------~~~l--~~~~~~~~~~~~a~~~~~~~~~~-- 246 (482)
++ .+..-.-+.+..++..+......|. ....+|..- |... +.-|.-.|+...+...++++.+.
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~---~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siq 243 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIW---QNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQ 243 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHH---hccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHh
Confidence 11 1111101112556666666667773 455565432 1111 23345668888887777776542
Q ss_pred -CC----------CCCCchhHHHHHHH-------------HHHcCCChHHHHHHH-------HhccCCC--HH-------
Q 011587 247 -FY----------MPENDVFIGTALVD-------------MYSKCGCLDNALLIF-------SRMREKN--VL------- 286 (482)
Q Consensus 247 -~~----------~p~~~~~~~~~li~-------------~~~~~g~~~~A~~~~-------~~~~~~~--~~------- 286 (482)
+. .+.+....+.-+.+ .-.-.|-+++|.++- ++.++.+ ..
T Consensus 244 tist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km 323 (629)
T KOG2300|consen 244 TISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKM 323 (629)
T ss_pred ccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 11 11122221111111 011234444554444 4444333 22
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--H-----HHHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCcCH
Q 011587 287 -TWTAMATGMAIHGKGNEAIRLLDSMRDCG-VKPN--A-----VTFTSLFA-ACCHAGLVEEGLHLFDNMKSKWGVEPHI 356 (482)
Q Consensus 287 -~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~-----~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (482)
+...++.+-.-.|++.+|++-+..|.+.- -.|. . .....++. .++..+.++.|+.-|....+. .-..+.
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl 402 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDL 402 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHH
Confidence 22333444456799999999999997642 2333 1 11223333 344568899999988888774 333333
Q ss_pred H--HHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHH--------HHHH--HHhcCCHhHHHHHHHHHHhcCCCcccc
Q 011587 357 K--HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS--------LLSA--CNVHGDVALGEKVGKILLQLQPEVTFV 424 (482)
Q Consensus 357 ~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~--------l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~ 424 (482)
. .-..+...|.+.|+.+.-.++++.++ .++..++.+ ++.+ ....+++.+|...+++.++...-.++.
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~ 481 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN 481 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence 2 22345667889999998888888885 332222211 1222 246799999999999988754311100
Q ss_pred cccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 425 DVACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 425 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
+...-....|...+...|+..++.+...
T Consensus 482 --rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 482 --RLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred --HHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 0112223344556667777777765443
No 467
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.30 E-value=53 Score=30.09 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLE 373 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 373 (482)
....|.++.|++.|...+... +|....|..=.+++.+.+....|++=++...+ +.|| ...|-.--.+-...|+++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e---in~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE---INPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc---cCcccccccchhhHHHHHhhchH
Confidence 345688999999999888874 45677777777888888899999888887776 2343 223333334445578898
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 374 EAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 374 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
+|...|... .+.-|..+-..+=...-+.+..++-...+++..+..
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHh
Confidence 888777765 222333333334444455566666666666655543
No 468
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.13 E-value=4.7e+02 Score=27.85 Aligned_cols=132 Identities=12% Similarity=0.051 Sum_probs=82.6
Q ss_pred HHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
..+..+|+++.|++.-..+. +..+|..|...... +|+.+-|+..|++.+ -|..|--.|.-.|
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~-----qgn~~IaEm~yQ~~k-----------nfekLsfLYliTg 712 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALR-----QGNHQIAEMCYQRTK-----------NFEKLSFLYLITG 712 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHH-----hcchHHHHHHHHHhh-----------hhhheeEEEEEeC
Confidence 34456677777777665554 66778888888888 888888888888875 2334444566678
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
+.++..++.+-+.... .......++ .-.|++++-.++++....-+..-..+ ...|.-++|.++.++.
T Consensus 713 n~eKL~Km~~iae~r~---D~~~~~qna-----lYl~dv~ervkIl~n~g~~~laylta-----~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 713 NLEKLSKMMKIAEIRN---DATGQFQNA-----LYLGDVKERVKILENGGQLPLAYLTA-----AAHGLEDQAEKLGEEL 779 (1202)
T ss_pred CHHHHHHHHHHHHhhh---hhHHHHHHH-----HHhccHHHHHHHHHhcCcccHHHHHH-----hhcCcHHHHHHHHHhh
Confidence 8877776666554433 111111111 22477777777777666543322111 3457778888888887
Q ss_pred HhC
Q 011587 312 RDC 314 (482)
Q Consensus 312 ~~~ 314 (482)
...
T Consensus 780 ~~~ 782 (1202)
T KOG0292|consen 780 EKQ 782 (1202)
T ss_pred ccc
Confidence 653
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.98 E-value=1.1e+02 Score=22.90 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=17.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
...+..-.|.++++.+.+.+..++..|....+..+...|
T Consensus 11 ~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 11 LESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444445555555555444444444444444444433
No 470
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.51 E-value=41 Score=26.09 Aligned_cols=27 Identities=0% Similarity=-0.047 Sum_probs=23.4
Q ss_pred HHHHhccCcchHHHHHHHHHHhcCCCCc
Q 011587 13 LKLKAITTPSHIKQIHAQLITNALKSPP 40 (482)
Q Consensus 13 ~l~~~~~~~~~~~~i~~~~~~~g~~~~~ 40 (482)
.+++. |+-.++.+++..|++.|-+||-
T Consensus 104 tlR~y-gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAY-GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhh-ccCCcHHHHHHHHHhCCCCCcc
Confidence 46677 8889999999999999988874
No 471
>PRK10941 hypothetical protein; Provisional
Probab=32.06 E-value=3.7e+02 Score=24.04 Aligned_cols=78 Identities=5% Similarity=0.011 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+.+-.+|.+.++++.|+.+.+.+..... .+..-+.--.-.|.+.|.+..|..=++...+...-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34445566666777777777776666431 1333344344446666666677666666665433344444444444433
No 472
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.42 E-value=2.9e+02 Score=22.57 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=27.5
Q ss_pred cCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 350 WGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 350 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
.|+..+..-. .++..+...++.-.|.++++.+ +...+..|.---+..+...|-+.
T Consensus 20 ~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 20 RNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred cCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4666554333 3444444445555666666666 32334444333445666666543
No 473
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.45 E-value=2e+02 Score=20.48 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-----CHHHHHHHHHHHHhcCC
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-----NVLTWTAMATGMAIHGK 300 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~ 300 (482)
|.|...-..+...+...|++++|++.+-.+.+. +...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 556666677777777777777777777666543 23344444444444443
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.37 E-value=2.6e+02 Score=22.14 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHA-GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.+.+.|.+++..-. .++..+... +..-.|.++++.+.+. +...+..|...-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 34555666554433 344444433 4566777777777764 5555555555555555555543
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.17 E-value=5.1e+02 Score=24.95 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHC---CC-CCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 87 QDSVLVFAYWVSK---GL-LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 87 ~~a~~~~~~m~~~---~~-~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
++...++...... |+ .. +......++..+ .| + ...+..+++.+... .......++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s--~G-d--~R~aln~Le~~~~~-------------~~~It~~~v~~ 214 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVEL-DDEALDALARLA--NG-D--ARRALNLLELAALG-------------VDSITLELLEE 214 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhC--CC-C--HHHHHHHHHHHHHc-------------cCCCCHHHHHH
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhcCCcccc---cchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC-----chH
Q 011587 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAK---DCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG-----LLE 234 (482)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~ 234 (482)
+..........+...+..+++++.+ . .+.+.|+..+..|. ..|..|....-..+..++...| ...
T Consensus 215 ~~~~~~~~~d~~~~~~~~~isa~~k-----s~rgsd~~aal~~l~~~l--~~G~d~~~i~rrl~~~a~edig~a~~~~~~ 287 (413)
T PRK13342 215 ALQKRAARYDKDGDEHYDLISALHK-----SIRGSDPDAALYYLARML--EAGEDPLFIARRLVIIASEDIGLADPNALQ 287 (413)
T ss_pred HHhhhhhccCCCccHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHhhcccCHHHHH
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhc
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 280 (482)
.+...++.....|. |.........+-.++.+-+-..+...++..
T Consensus 288 ~~~~~~~~~~~~g~--pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 288 VAVAAADAVERIGM--PEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HHHHHHHHHHHhCC--cHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 476
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=7.4e+02 Score=26.78 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=20.7
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
+...|++..|.+++.++.+..|-.++...|..++..+...|
T Consensus 1241 a~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1241 AKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 33445555555555555554444455555554444444444
No 477
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=2.7e+02 Score=25.74 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCH-HHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP--HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDA-ILWRSLLSA 397 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~ 397 (482)
+|.-=..-|.+..++..|...|.+-++...-.| +...|+.-..+-.-.|++..|+.=.... .+.|+. ..|--=..+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 344444455555666666666666555311122 2334444444444455555555544444 444532 222222334
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 011587 398 CNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~ 416 (482)
+.....+++|..+.++..+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4445555556555555443
No 478
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.83 E-value=95 Score=23.49 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
.++..+...+..-.|.++++.|.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555555556667777777776666666655555555555444
No 479
>PF15469 Sec5: Exocyst complex component Sec5
Probab=29.41 E-value=3.3e+02 Score=22.50 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCC-CHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKP-DAILWRSL 394 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l 394 (482)
...+..++..-.+......+..++++..- ....-.-+.-+.+.|+++.+...|.+. +-.. ....+..+
T Consensus 57 ~~~~~pll~~~~k~~~l~~~l~~l~r~~f-------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v 129 (182)
T PF15469_consen 57 NSVFKPLLERREKADKLRNALEFLQRNRF-------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV 129 (182)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccEE
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVETEPGSSIL 470 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 470 (482)
. .+.+....-++..+.... -++. ...++...+++.+.+.+...+|.+.|+
T Consensus 130 ~------~eve~ii~~~r~~l~~~L--------~~~~------------~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 130 W------SEVEKIIEEFREKLWEKL--------LSPP------------SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred H------HHHHHHHHHHHHHHHHHH--------hCCC------------CCHHHHHHHHHHHHhCCCCCCHHHHHH
No 480
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.04 E-value=43 Score=32.08 Aligned_cols=91 Identities=10% Similarity=0.051 Sum_probs=59.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH-HHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHhcC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC-IVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSACNVHG 402 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 402 (482)
-+..+.+.+.++.|..++.++.+. .||...|-+ -..++.+.+++..|+.=+... ...|+ ...|--=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 345566778899999999999873 665544433 337788889988886655544 44453 223322234455666
Q ss_pred CHhHHHHHHHHHHhcCC
Q 011587 403 DVALGEKVGKILLQLQP 419 (482)
Q Consensus 403 ~~~~a~~~~~~~~~~~~ 419 (482)
.+.+|...|+......|
T Consensus 87 ~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAP 103 (476)
T ss_pred HHHHHHHHHHHhhhcCc
Confidence 77778888887777666
No 481
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.82 E-value=1.7e+02 Score=20.26 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=6.2
Q ss_pred HHHHHHHHhCCCCc
Q 011587 130 QIHVHVTKRGFMFN 143 (482)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (482)
++++.+.+.|..++
T Consensus 73 ~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHTTT-TT
T ss_pred HHHHHHHHcCCCCC
Confidence 34455555554443
No 482
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.51 E-value=1.1e+02 Score=29.42 Aligned_cols=51 Identities=16% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHcCCChHHHHHHHHhccC--CCHHH-HHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 263 MYSKCGCLDNALLIFSRMRE--KNVLT-WTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 263 ~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
.+.+.++++.|..++.+..+ ||-.. |..-..++.+.+++..|+.=+.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444455555555554442 22222 22222444455555555444444444
No 483
>PRK09857 putative transposase; Provisional
Probab=28.20 E-value=3.7e+02 Score=24.42 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=28.8
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
..++.++-.++++...+..+ .......+++.-+.+.|.-+++.++..+|...|+..
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~--------~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAERSP--------KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred hccccchHHHHHHHHHHhCc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 34454445555555544433 233344455555555555555666666666655543
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.08 E-value=1.6e+02 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=12.7
Q ss_pred HHHHHHHcCCChHHHHHHHHhccCC
Q 011587 259 ALVDMYSKCGCLDNALLIFSRMREK 283 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~~~~ 283 (482)
.++.-|...|+.++|...+.++..|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 3444555556666666666655433
No 485
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=28.02 E-value=5.9e+02 Score=25.06 Aligned_cols=106 Identities=20% Similarity=0.238 Sum_probs=67.1
Q ss_pred HHHhcCChHHHHHHHHHHH---hCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHh------cCCCcCH---
Q 011587 294 GMAIHGKGNEAIRLLDSMR---DCGVKPNA-----VTFTSLFAACCHAGLVEEGLHLFDNMKSK------WGVEPHI--- 356 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~---~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~--- 356 (482)
.+.-.|++.+|.+++...- +.|...+. ..+|.+-..+.+.|.+..+..+|....+. .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3456799999999886542 22322221 11244444555667777666666666531 2555431
Q ss_pred --------HHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHh
Q 011587 357 --------KHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNV 400 (482)
Q Consensus 357 --------~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 400 (482)
.+||. .-.|...|++-.|.+.|.+. -+..++..|--|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 23332 34567789999999999887 566788899888888864
No 486
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.71 E-value=4.3e+02 Score=23.33 Aligned_cols=94 Identities=9% Similarity=-0.112 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC---------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE---------------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
+.+..--.+-+.+.|++.+|..-|++... .....+-..-.++...|++-++++.-.+..
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred hCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 313 DCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 313 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
..... +...|..=..+.+..-+..+|..-|....+
T Consensus 258 ~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 258 RHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
No 487
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.49 E-value=4.2e+02 Score=23.19 Aligned_cols=49 Identities=12% Similarity=-0.036 Sum_probs=22.5
Q ss_pred hhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHh
Q 011587 227 SSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
|.+..+..-..++.+-....++ +.+.....+++ +...||...|+.-++.
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv--~yt~dgLeaii--fta~GDMRQalNnLQs 217 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKV--NYTDDGLEAII--FTAQGDMRQALNNLQS 217 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCC--CCCcchHHHhh--hhccchHHHHHHHHHH
Confidence 4444444444444444444444 33333333332 3455666666555443
No 488
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.44 E-value=5.3e+02 Score=24.31 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHH---HH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS---LL 395 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~ 395 (482)
-..++..+-..+...|+...|.+++++..-.++ .++......+........+.--| ...-|...|-+ .|
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e-----~~~~~~F~~~~~~~~~g~~rL~~---~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFE-----RAFHPSFSPFRSNLTSGNCRLDY---RRPENRQFFLALFRYI 110 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhhhcccccCccccCC---ccccchHHHHHHHHHH
Confidence 445666666677777777777777777654210 01111111000000000000000 11113333433 35
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH-hCCCchHHHHHHHHhHh
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA-SAERWPDVESVRKQMKV 458 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 458 (482)
..+.+.|-+..|.++.+-+...+|+ .|+.....+|+.|+ ++++++--+++.+....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~-------~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPD-------EDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCC-------CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5677888888888888888888882 37777777777665 67777777777766544
No 489
>PHA00425 DNA packaging protein, small subunit
Probab=27.37 E-value=1.7e+02 Score=20.12 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=32.0
Q ss_pred ChhHHHHHhccCC---CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 159 DISSGKKVFDQMP---MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 159 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
+.+.|..++..+. ++++..||++-..+.+ . ... -..++||..+..-+..+.
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~R-----H-----------kF~--isKl~pD~~iLg~la~~l 67 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDR-----H-----------KFQ--ISKLQPDENILGGLAAAL 67 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHH-----h-----------ccc--ccccCCcHHHHHHHHHHH
Confidence 4566777776665 3477888887776666 2 222 456778887765554433
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.32 E-value=4.7e+02 Score=23.68 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=52.0
Q ss_pred HHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 339 (482)
++..+.+.+++....+.+..+. .+..-...+..+...|++.+|++++.+..+. .. +...|.++=..- .++.+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---SQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---HHHHHH
Confidence 4444444445444444444442 2233334455666777888887777766542 10 111111111111 111222
Q ss_pred HHHHHHhHH----hcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 340 LHLFDNMKS----KWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 340 ~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
....+++.+ ..-..-|+..|..++.+|.-.|+...+.+-+.
T Consensus 177 ~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222221111 01113466677777777777776665544333
No 491
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.99 E-value=96 Score=21.50 Aligned_cols=27 Identities=0% Similarity=0.043 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 435 ALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
++++.+.++.-.++|+++++-|.++|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 578888899999999999999988764
No 492
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.74 E-value=3.6e+02 Score=27.53 Aligned_cols=88 Identities=14% Similarity=0.171 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccCC------CHHHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMREK------NVLTWTAMATGMAIHGKGN------EAIRLLDSMRDCGVKPNAVTFTS 325 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~ 325 (482)
.+|..+|...|++-.+.++++..... -...||..|....+.|.++ .|.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 38999999999999999999988742 3467888899999999754 3444444433 4558889988
Q ss_pred HHHHHhccCcHHHHHHHHHHhHH
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
++++-.+.-+-....-++.++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 88876664444444555555554
No 493
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.79 E-value=2.4e+02 Score=21.20 Aligned_cols=40 Identities=15% Similarity=-0.031 Sum_probs=26.6
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFY 154 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (482)
+++..+.++. . .++|+++++.|.+.| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~-T--~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCK-T--DEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhC-c--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3555556666 7 888999999999888 44555544444443
No 494
>PRK09169 hypothetical protein; Validated
Probab=25.16 E-value=1.3e+03 Score=28.06 Aligned_cols=336 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHH-------HHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCC----
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHV-------TKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMR---- 173 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 173 (482)
+...+..+++++++-. + -..+...-..+ ...-...+......+++++.|.-+-..+...-..+-..
T Consensus 161 ~~~~v~~lLNalSKWP-~--~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~ 237 (2316)
T PRK09169 161 DAISFALLLNALSKWP-D--NTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADE 237 (2316)
T ss_pred hhHHHHHHHHHhccCC-C--chHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcC
Q ss_pred -------CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc--CHHHHHHHHHHhhccCchH--------HH
Q 011587 174 -------SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP--TDTTMVCVLSVSSQLGLLE--------FG 236 (482)
Q Consensus 174 -------~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p--~~~~~~~l~~~~~~~~~~~--------~a 236 (482)
+......++++++|... ......|...+-.-..+..+... |.-.....++++++..+-+ .|
T Consensus 238 ~~l~~~l~~q~va~~LNAlSKWp~--~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA 315 (2316)
T PRK09169 238 PGLLQSLRAQEVALLLNALSKWPD--DEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALA 315 (2316)
T ss_pred hHHHHhcCHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHH
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------CCHHHHHHHHHHHHhcCChH---
Q 011587 237 ACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------KNVLTWTAMATGMAIHGKGN--- 302 (482)
Q Consensus 237 ~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~--- 302 (482)
..+........ ..+..-....+++++|-.+-+.+......+.. -+..-....+.+++|..+-+
T Consensus 316 ~rL~~~~~l~~---~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr 392 (2316)
T PRK09169 316 ERLAQERGLLQ---AMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACR 392 (2316)
T ss_pred HHHHhChhhhh---hCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHH
Q ss_pred -HHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc------CHHHHHHHHHHHhccCCH
Q 011587 303 -EAIRLLDSMRDC---GVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP------HIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 303 -~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 372 (482)
.+..+...+... .-..|..-....+.+++|-+.-+.+......+.....-.+ +..-....+.++.+.++-
T Consensus 393 ~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~ 472 (2316)
T PRK09169 393 AAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDE 472 (2316)
T ss_pred HHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCch
Q ss_pred HHHHHHHHcC----------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--------cCCCcccccccCCchhHH
Q 011587 373 EEAYNFIMGI----------PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQ--------LQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 373 ~~A~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 434 (482)
+........+ .-.-+..-....+.++++-++.+.+...-..+.. ... -++.-+.
T Consensus 473 ~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~a--------fnpQ~lA 544 (2316)
T PRK09169 473 AACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQA--------MDAQGLA 544 (2316)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhh--------cCHHHHH
Q ss_pred HHHHHHHhCCCchHHHHHHHHh
Q 011587 435 ALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m 456 (482)
..++++++-.+.+.+...-+.+
T Consensus 545 N~LnALSKWP~~~~cr~AA~aL 566 (2316)
T PRK09169 545 NTLNALSKWPEEPDCRAAAEAL 566 (2316)
T ss_pred HHHHHHHcCCCchHHHHHHHHH
No 495
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.10 E-value=2e+02 Score=21.69 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=35.9
Q ss_pred HHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 110 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
..++..+...+ . .-.|.++++.+.+.+...+..|.-.-++.+.+.|-+..
T Consensus 11 ~~Il~~l~~~~-~--~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESP-E--HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHS-S--SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC-C--CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 45666666666 6 77899999999988877777776667788888876554
No 496
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.01 E-value=7.2e+02 Score=25.05 Aligned_cols=185 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC------------------------CCChhhHHHHhcC-------C
Q 011587 36 LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD------------------------PPNLFLFNTLIRC-------T 84 (482)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~ll~~-------~ 84 (482)
+..+++..+.|+.+.--++.+|+.+-+..+++... .-|..-|-++.+. |
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Q ss_pred CCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC---CCCchhHHHHHHHHHHhCCC--
Q 011587 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG---FMFNVLVATTLIHFYASNKD-- 159 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~-- 159 (482)
-+..|++.-.-+......- |+.....+|..|+-..++ ++=..++++.....+ .-||-..-.+|...|.....
T Consensus 357 C~rTA~E~cKlllsLdp~e-DPl~~l~~ID~~ALrare--YqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSE-DPLGILYLIDIYALRARE--YQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEED 433 (665)
T ss_pred ChHHHHHHHHHHhhcCCcC-CchhHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChh
Q ss_pred -hhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCc
Q 011587 160 -ISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL 232 (482)
Q Consensus 160 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~ 232 (482)
-..|...+.+....-+...+-|+..+ .=..+.+...++... ..--.+....+..++..|.....
T Consensus 434 ~rqsa~~~l~qAl~~~P~vl~eLld~~-------~l~~da~~~~~k~~~--~~a~~~e~pal~~lv~lY~~r~~ 498 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHPLVLSELLDEL-------LLGDDALTKDLKFDG--SSAENSELPALMLLVKLYANRNE 498 (665)
T ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHhc-------cCCchhhhhhhcccc--cccccccchHHHHHHHHHHhhhh
No 497
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.98 E-value=6.8e+02 Score=24.71 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
....++.+ .+.++++.|..++.+|...|..|....-..+..++
T Consensus 246 ~i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~ 288 (472)
T PRK14962 246 VVRDYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLV 288 (472)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33444444 35688999999999999888777655444333333
No 498
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.96 E-value=5.3e+02 Score=23.49 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=43.2
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHHhcCCCcCHHHH
Q 011587 291 MATGMA---IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-----VEEGLHLFDNMKSKWGVEPHIKHY 359 (482)
Q Consensus 291 li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 359 (482)
+|+++. +-.+++.|+-.+.+|.+.|..|....-..++.+.-.-|. ...|...++.... -|.+--....
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~-iG~PEa~i~L 204 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEK-LGMPEGRLVL 204 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-hCChHHHHHH
Confidence 445543 457889999999999999888777666666666655552 3345555555555 3654433333
No 499
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.89 E-value=2.3e+02 Score=19.78 Aligned_cols=31 Identities=16% Similarity=-0.063 Sum_probs=21.6
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
+++..+.++. . -++|.++++.+.++| ..+..
T Consensus 36 tV~D~L~rCd-T--~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCD-T--EEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhC-c--HHHHHHHHHHHHHhC-CCCHH
Confidence 4555566666 7 788888888888887 34443
No 500
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=24.09 E-value=6.7e+02 Score=28.01 Aligned_cols=159 Identities=14% Similarity=0.036 Sum_probs=93.8
Q ss_pred HHHhcCChHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH---h-cCCC--cCHHHHHH
Q 011587 294 GMAIHGKGNEAIR------LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS---K-WGVE--PHIKHYSC 361 (482)
Q Consensus 294 ~~~~~~~~~~a~~------~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~~ 361 (482)
.....|.+.++.+ ++......-.++....|..+...+-+.++.++|...-....- + .|.. -+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3445566666666 555222221244566778888888889999888776544321 0 1221 23344555
Q ss_pred HHHHHhccCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI---------PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
+.......++...|...+.+. ...|. ..+++.+-..+...++++.|.++.+.+......+..+.-..+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 555555556666665555433 23453 44445444445556899999999999887544332222235677
Q ss_pred hHHHHHHHHHhCCCchHHHHH
Q 011587 432 DFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~ 452 (482)
+|..+.+.+...+++..|...
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 888888888888877765543
Done!