Query 011587
Match_columns 482
No_of_seqs 480 out of 2957
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 11:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.6E-37 5.5E-42 311.9 35.3 426 3-460 80-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.3E-34 1.5E-38 287.0 34.4 405 5-441 115-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.6E-30 8.8E-35 249.6 24.4 212 87-332 7-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.2E-29 1.1E-33 242.0 21.3 212 198-443 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.6E-31 219.5 37.7 360 57-445 13-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-26 7.1E-31 218.2 35.6 347 84-459 13-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.3E-22 1.5E-26 195.7 32.8 390 43-460 9-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.8E-26 189.5 35.2 337 90-456 12-406 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 1.7E-21 5.8E-26 188.2 32.6 340 84-449 40-444 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.6E-21 5.3E-26 191.7 30.4 378 19-419 20-480 (514)
11 3fp2_A TPR repeat-containing p 99.9 2.1E-20 7.2E-25 184.7 35.0 248 194-460 216-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 4E-23 162.6 32.2 311 105-442 2-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 8.4E-19 2.9E-23 163.6 29.4 296 143-460 2-336 (359)
14 3fp2_A TPR repeat-containing p 99.8 1E-18 3.5E-23 172.6 30.1 375 19-419 39-493 (537)
15 3hym_B Cell division cycle pro 99.8 1.5E-18 5.2E-23 159.9 25.0 286 141-446 19-321 (330)
16 3hym_B Cell division cycle pro 99.8 1.4E-17 4.9E-22 153.4 29.2 284 105-405 21-322 (330)
17 1fch_A Peroxisomal targeting s 99.8 5.5E-18 1.9E-22 158.8 22.4 289 154-455 35-355 (368)
18 4eqf_A PEX5-related protein; a 99.8 7.2E-18 2.5E-22 158.0 21.2 285 158-455 45-352 (365)
19 2ooe_A Cleavage stimulation fa 99.8 7.4E-15 2.5E-19 144.6 41.6 215 234-459 255-492 (530)
20 1b89_A Protein (clathrin heavy 99.8 4.9E-17 1.7E-21 150.1 22.2 282 57-382 17-308 (449)
21 1fch_A Peroxisomal targeting s 99.8 9.3E-17 3.2E-21 150.5 23.2 253 193-459 38-314 (368)
22 3mkr_A Coatomer subunit epsilo 99.8 3.9E-16 1.3E-20 140.7 26.3 271 152-452 7-287 (291)
23 2xm6_A Protein corresponding t 99.8 8.6E-15 2.9E-19 142.7 37.5 308 84-419 93-434 (490)
24 3cv0_A Peroxisome targeting si 99.8 4.9E-17 1.7E-21 149.6 19.8 269 174-456 20-312 (327)
25 4eqf_A PEX5-related protein; a 99.8 4.7E-17 1.6E-21 152.4 19.8 231 216-459 64-310 (365)
26 2xm6_A Protein corresponding t 99.7 4.8E-15 1.7E-19 144.5 34.0 335 84-454 57-427 (490)
27 3spa_A Mtrpol, DNA-directed RN 99.7 3.5E-18 1.2E-22 170.0 8.5 161 251-416 124-309 (1134)
28 1b89_A Protein (clathrin heavy 99.7 5.5E-16 1.9E-20 143.1 22.4 286 7-343 6-305 (449)
29 4g1t_A Interferon-induced prot 99.7 1.6E-15 5.4E-20 147.3 26.9 349 105-469 50-469 (472)
30 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6.2E-20 136.3 23.8 241 193-460 12-265 (291)
31 3cv0_A Peroxisome targeting si 99.7 9.5E-16 3.2E-20 140.9 22.5 258 107-382 22-312 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.1E-22 165.5 9.1 152 285-444 127-286 (1134)
33 1xi4_A Clathrin heavy chain; a 99.7 1.9E-13 6.6E-18 140.6 38.8 377 5-454 951-1340(1630)
34 1xi4_A Clathrin heavy chain; a 99.7 2.7E-13 9.3E-18 139.6 38.9 383 7-451 985-1376(1630)
35 2ooe_A Cleavage stimulation fa 99.7 2.3E-13 7.9E-18 134.0 34.0 179 271-460 255-455 (530)
36 4g1t_A Interferon-induced prot 99.7 2.9E-14 9.9E-19 138.3 26.1 360 36-419 47-461 (472)
37 3uq3_A Heat shock protein STI1 99.7 3.4E-14 1.2E-18 125.6 23.6 221 217-460 5-237 (258)
38 2pl2_A Hypothetical conserved 99.6 2.2E-14 7.4E-19 123.5 20.2 196 251-457 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.6 1.2E-14 4.1E-19 128.6 18.3 225 175-418 5-237 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.6E-14 1.2E-18 126.9 20.9 240 193-453 18-269 (275)
41 2ho1_A Type 4 fimbrial biogene 99.6 3.2E-13 1.1E-17 119.0 24.7 198 217-419 37-240 (252)
42 2q7f_A YRRB protein; TPR, prot 99.6 6.7E-14 2.3E-18 122.6 17.8 212 214-439 20-236 (243)
43 3u4t_A TPR repeat-containing p 99.6 2.2E-13 7.4E-18 121.6 21.2 247 177-443 5-268 (272)
44 2vq2_A PILW, putative fimbrial 99.6 8.3E-13 2.9E-17 113.9 23.9 199 216-419 7-213 (225)
45 2pl2_A Hypothetical conserved 99.6 2.8E-13 9.6E-18 116.5 19.7 191 175-381 5-210 (217)
46 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-13 5.5E-18 120.1 17.8 199 251-460 20-223 (243)
47 3u4t_A TPR repeat-containing p 99.6 4.9E-13 1.7E-17 119.3 21.1 237 217-460 3-251 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 6.3E-13 2.2E-17 117.1 21.5 197 254-460 37-239 (252)
49 1ouv_A Conserved hypothetical 99.6 4.6E-12 1.6E-16 113.1 27.3 224 216-461 5-253 (273)
50 2h6f_A Protein farnesyltransfe 99.6 4.6E-13 1.6E-17 124.8 21.4 246 174-442 96-365 (382)
51 2h6f_A Protein farnesyltransfe 99.6 2.5E-13 8.4E-18 126.6 19.3 225 217-456 97-344 (382)
52 3e4b_A ALGK; tetratricopeptide 99.5 6.2E-13 2.1E-17 127.7 21.7 376 46-459 9-421 (452)
53 2vq2_A PILW, putative fimbrial 99.5 2.2E-12 7.4E-17 111.3 22.2 201 251-460 5-212 (225)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-13 9.3E-18 121.1 16.4 239 84-343 19-269 (275)
55 4a1s_A PINS, partner of inscut 99.5 3.3E-13 1.1E-17 128.3 17.2 270 178-458 51-371 (411)
56 1ouv_A Conserved hypothetical 99.5 1.1E-11 3.8E-16 110.6 26.2 223 174-419 5-253 (273)
57 3sf4_A G-protein-signaling mod 99.5 7.3E-13 2.5E-17 125.5 18.6 272 175-457 9-334 (406)
58 3ro2_A PINS homolog, G-protein 99.5 7E-13 2.4E-17 121.9 16.9 270 178-459 8-332 (338)
59 3e4b_A ALGK; tetratricopeptide 99.5 4.4E-12 1.5E-16 121.8 23.0 342 81-462 14-390 (452)
60 4abn_A Tetratricopeptide repea 99.5 6.8E-13 2.3E-17 128.3 16.9 207 234-455 85-317 (474)
61 3sf4_A G-protein-signaling mod 99.5 3.9E-13 1.3E-17 127.4 13.7 294 147-447 12-364 (406)
62 3vtx_A MAMA; tetratricopeptide 99.5 8.5E-12 2.9E-16 104.1 20.1 164 284-458 4-169 (184)
63 4a1s_A PINS, partner of inscut 99.4 5.4E-13 1.8E-17 126.8 13.2 269 146-419 50-374 (411)
64 3vtx_A MAMA; tetratricopeptide 99.4 1.1E-11 3.7E-16 103.5 17.7 164 253-419 4-172 (184)
65 3ulq_A Response regulator aspa 99.4 2.8E-11 9.4E-16 113.9 22.3 232 181-419 109-370 (383)
66 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4.2E-14 108.6 34.9 401 6-419 65-572 (679)
67 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.6E-17 118.7 12.2 233 216-458 26-306 (311)
68 3ro2_A PINS homolog, G-protein 99.4 2.7E-12 9.3E-17 117.9 13.8 238 177-419 45-334 (338)
69 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.5E-15 105.6 24.9 214 197-419 33-272 (308)
70 2ond_A Cleavage stimulation fa 99.4 1.6E-10 5.5E-15 105.1 25.1 215 234-461 33-272 (308)
71 4e6h_A MRNA 3'-END-processing 99.4 2.5E-09 8.6E-14 106.4 34.8 425 24-462 51-573 (679)
72 4abn_A Tetratricopeptide repea 99.4 1.3E-11 4.3E-16 119.4 17.6 211 193-412 81-316 (474)
73 3ulq_A Response regulator aspa 99.4 8.8E-12 3E-16 117.3 16.2 227 223-458 109-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.3 8.9E-12 3E-16 113.3 13.0 238 175-419 27-309 (311)
75 3as5_A MAMA; tetratricopeptide 99.3 9E-11 3.1E-15 97.6 18.1 158 290-458 13-172 (186)
76 4gyw_A UDP-N-acetylglucosamine 99.3 6.1E-11 2.1E-15 119.3 18.6 162 285-457 9-172 (723)
77 1hz4_A MALT regulatory protein 99.3 2.3E-09 8E-14 100.2 28.1 261 193-458 27-321 (373)
78 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.9E-15 95.4 17.8 164 253-419 7-175 (186)
79 3q15_A PSP28, response regulat 99.3 1.2E-10 4.1E-15 109.2 17.6 227 222-457 106-363 (378)
80 3q15_A PSP28, response regulat 99.3 3.2E-09 1.1E-13 99.5 27.2 303 105-418 9-366 (378)
81 4i17_A Hypothetical protein; T 99.3 6.8E-10 2.3E-14 96.0 19.7 205 215-439 5-223 (228)
82 1hz4_A MALT regulatory protein 99.2 5.5E-09 1.9E-13 97.6 23.5 291 152-448 22-354 (373)
83 4i17_A Hypothetical protein; T 99.2 8.7E-10 3E-14 95.3 16.4 191 252-460 5-210 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.2 8.5E-10 2.9E-14 111.0 17.9 161 216-382 8-171 (723)
85 3edt_B KLC 2, kinesin light ch 99.1 2E-09 6.7E-14 96.0 17.6 218 198-417 26-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.1 1.1E-09 3.7E-14 97.7 14.7 223 228-458 12-280 (283)
87 2fo7_A Synthetic consensus TPR 99.1 6.3E-09 2.2E-13 81.1 15.2 123 326-458 7-131 (136)
88 1qqe_A Vesicular transport pro 99.0 5.3E-09 1.8E-13 94.1 16.1 207 195-419 32-271 (292)
89 3mv2_B Coatomer subunit epsilo 99.0 8.3E-08 2.8E-12 85.0 23.2 242 193-460 26-283 (310)
90 1qqe_A Vesicular transport pro 99.0 2.8E-09 9.7E-14 95.9 13.7 206 232-457 32-267 (292)
91 3qky_A Outer membrane assembly 99.0 6.5E-09 2.2E-13 91.8 15.3 164 254-419 15-226 (261)
92 2fo7_A Synthetic consensus TPR 99.0 1.4E-08 4.7E-13 79.1 15.4 130 287-419 3-134 (136)
93 2pzi_A Probable serine/threoni 99.0 2.1E-09 7.1E-14 108.6 10.9 169 228-403 402-583 (681)
94 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.4E-12 82.7 21.1 174 236-419 85-284 (310)
95 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.1E-07 3.7E-12 81.9 19.0 186 253-463 3-217 (225)
96 4ga2_A E3 SUMO-protein ligase 98.9 2.6E-09 8.8E-14 85.5 7.7 142 293-445 5-149 (150)
97 3urz_A Uncharacterized protein 98.9 7.3E-08 2.5E-12 81.8 16.9 91 221-314 8-117 (208)
98 3qky_A Outer membrane assembly 98.9 5.8E-08 2E-12 85.7 16.8 172 283-460 13-225 (261)
99 2pzi_A Probable serine/threoni 98.9 9E-08 3.1E-12 96.7 20.3 184 192-382 403-602 (681)
100 3rjv_A Putative SEL1 repeat pr 98.9 2.4E-07 8.3E-12 78.7 19.9 172 273-461 5-199 (212)
101 3qou_A Protein YBBN; thioredox 98.9 5.8E-08 2E-12 87.0 16.6 177 271-457 103-282 (287)
102 3dra_A Protein farnesyltransfe 98.9 4.2E-07 1.4E-11 81.3 21.7 213 232-458 48-286 (306)
103 3urz_A Uncharacterized protein 98.9 6.4E-08 2.2E-12 82.1 15.8 160 256-419 6-188 (208)
104 2r5s_A Uncharacterized protein 98.9 4.6E-08 1.6E-12 80.5 13.9 157 256-416 8-172 (176)
105 2vsy_A XCC0866; transferase, g 98.9 3.6E-08 1.2E-12 97.7 15.3 160 267-437 2-169 (568)
106 2vsy_A XCC0866; transferase, g 98.8 5.8E-08 2E-12 96.2 16.3 147 230-382 2-154 (568)
107 3qou_A Protein YBBN; thioredox 98.8 1.5E-07 5.1E-12 84.3 17.4 163 215-381 115-280 (287)
108 2ifu_A Gamma-SNAP; membrane fu 98.8 8.8E-08 3E-12 86.8 15.6 221 193-451 4-253 (307)
109 2uy1_A Cleavage stimulation fa 98.8 1.3E-05 4.3E-10 77.4 31.2 343 57-416 28-412 (493)
110 3rjv_A Putative SEL1 repeat pr 98.8 3.1E-07 1.1E-11 78.1 17.7 175 235-419 4-199 (212)
111 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.7E-07 5.9E-12 80.6 15.7 183 216-419 3-215 (225)
112 3dra_A Protein farnesyltransfe 98.8 4.6E-06 1.6E-10 74.5 25.2 217 193-419 46-290 (306)
113 2r5s_A Uncharacterized protein 98.8 1.2E-07 3.9E-12 78.1 13.8 158 219-381 8-169 (176)
114 4ga2_A E3 SUMO-protein ligase 98.8 6.2E-08 2.1E-12 77.4 11.6 134 193-334 10-148 (150)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.8E-07 1.6E-11 76.8 16.2 129 256-387 8-153 (213)
116 2qfc_A PLCR protein; TPR, HTH, 98.7 1.7E-06 5.7E-11 77.7 19.1 170 286-457 76-264 (293)
117 2qfc_A PLCR protein; TPR, HTH, 98.7 8.8E-07 3E-11 79.5 17.2 166 253-418 74-267 (293)
118 3u3w_A Transcriptional activat 98.7 7.2E-06 2.5E-10 73.5 23.0 196 212-418 41-267 (293)
119 3u3w_A Transcriptional activat 98.7 7.3E-06 2.5E-10 73.4 22.9 210 239-457 33-264 (293)
120 2uy1_A Cleavage stimulation fa 98.7 5.6E-06 1.9E-10 79.8 23.3 358 58-458 10-412 (493)
121 2ifu_A Gamma-SNAP; membrane fu 98.7 6.8E-07 2.3E-11 80.9 15.8 223 157-409 4-253 (307)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.5E-06 5.2E-11 73.7 17.0 128 286-419 7-152 (213)
123 1a17_A Serine/threonine protei 98.6 5.7E-07 1.9E-11 72.8 13.7 127 321-457 14-144 (166)
124 2c2l_A CHIP, carboxy terminus 98.6 8.8E-08 3E-12 85.5 8.9 92 218-312 5-99 (281)
125 3gyz_A Chaperone protein IPGC; 98.6 1.9E-07 6.6E-12 74.3 9.9 94 357-458 37-132 (151)
126 4gco_A Protein STI-1; structur 98.6 5.2E-07 1.8E-11 69.5 11.9 108 321-438 14-123 (126)
127 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4E-11 66.8 13.3 114 320-443 9-124 (125)
128 2vyi_A SGTA protein; chaperone 98.6 9.8E-07 3.4E-11 67.9 12.7 117 320-446 12-130 (131)
129 3q7a_A Farnesyltransferase alp 98.6 7.5E-06 2.5E-10 74.0 20.0 222 229-458 66-330 (349)
130 2lni_A Stress-induced-phosphop 98.6 1.1E-06 3.6E-11 68.1 12.9 116 319-444 15-132 (133)
131 2vgx_A Chaperone SYCD; alterna 98.6 2E-07 7E-12 74.1 8.4 98 320-419 21-120 (148)
132 4gco_A Protein STI-1; structur 98.5 6.9E-07 2.3E-11 68.8 10.8 97 356-460 13-111 (126)
133 3gw4_A Uncharacterized protein 98.5 7.5E-07 2.6E-11 74.9 12.0 134 285-418 26-177 (203)
134 4f3v_A ESX-1 secretion system 98.5 5.2E-06 1.8E-10 72.5 16.6 184 229-419 18-239 (282)
135 1a17_A Serine/threonine protei 98.5 4E-06 1.4E-10 67.7 15.0 127 218-348 14-145 (166)
136 2c2l_A CHIP, carboxy terminus 98.5 1.3E-06 4.6E-11 77.7 13.1 162 253-417 3-199 (281)
137 3q7a_A Farnesyltransferase alp 98.5 8.6E-05 2.9E-09 67.1 24.7 217 193-419 67-334 (349)
138 1p5q_A FKBP52, FK506-binding p 98.5 1E-06 3.5E-11 80.7 12.1 159 268-456 127-291 (336)
139 1na0_A Designed protein CTPR3; 98.5 3.8E-06 1.3E-10 63.9 13.2 92 256-348 11-105 (125)
140 3gw4_A Uncharacterized protein 98.5 2.1E-06 7E-11 72.1 12.7 151 229-382 4-173 (203)
141 2e2e_A Formate-dependent nitri 98.5 7.6E-07 2.6E-11 73.1 9.6 122 295-419 20-146 (177)
142 4f3v_A ESX-1 secretion system 98.4 8.1E-06 2.8E-10 71.3 15.9 123 223-349 108-237 (282)
143 2xcb_A PCRH, regulatory protei 98.4 1.2E-06 4.1E-11 69.0 9.5 96 322-419 20-117 (142)
144 3gyz_A Chaperone protein IPGC; 98.4 3.1E-06 1.1E-10 67.2 11.8 98 320-419 36-135 (151)
145 2fbn_A 70 kDa peptidylprolyl i 98.4 2.2E-07 7.7E-12 78.0 5.3 171 259-458 9-185 (198)
146 2kck_A TPR repeat; tetratricop 98.4 2.3E-06 7.8E-11 63.8 10.5 97 357-461 7-108 (112)
147 2vgx_A Chaperone SYCD; alterna 98.4 1.8E-06 6.1E-11 68.6 10.2 92 219-313 23-117 (148)
148 2e2e_A Formate-dependent nitri 98.4 5.7E-06 2E-10 67.8 13.6 117 228-348 21-143 (177)
149 2lni_A Stress-induced-phosphop 98.4 5.7E-06 1.9E-10 63.8 12.6 93 255-348 17-112 (133)
150 1elw_A TPR1-domain of HOP; HOP 98.4 8.5E-06 2.9E-10 61.2 12.9 97 321-419 5-103 (118)
151 2vyi_A SGTA protein; chaperone 98.4 5.3E-06 1.8E-10 63.7 11.9 112 257-371 15-129 (131)
152 3upv_A Heat shock protein STI1 98.4 4.2E-06 1.4E-10 64.2 11.0 95 322-418 6-102 (126)
153 3upv_A Heat shock protein STI1 98.3 4.8E-06 1.6E-10 63.9 11.0 95 285-382 4-98 (126)
154 1p5q_A FKBP52, FK506-binding p 98.3 5.8E-06 2E-10 75.7 13.0 140 230-375 126-283 (336)
155 3q49_B STIP1 homology and U bo 98.3 9.2E-06 3.1E-10 63.2 12.0 99 319-419 8-108 (137)
156 3sz7_A HSC70 cochaperone (SGT) 98.3 4.2E-06 1.4E-10 67.7 10.3 99 319-419 10-110 (164)
157 2fbn_A 70 kDa peptidylprolyl i 98.3 1.4E-06 4.7E-11 73.1 7.4 150 221-376 8-176 (198)
158 2xcb_A PCRH, regulatory protei 98.3 4.3E-06 1.5E-10 65.8 9.5 104 276-382 6-112 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.3 1E-05 3.6E-10 60.7 11.4 98 355-460 3-102 (118)
160 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4.2E-10 63.3 12.2 111 319-440 27-143 (148)
161 1hxi_A PEX5, peroxisome target 98.3 3.3E-06 1.1E-10 64.4 8.4 92 359-458 20-113 (121)
162 4gcn_A Protein STI-1; structur 98.3 3.5E-06 1.2E-10 64.9 8.4 99 356-459 8-112 (127)
163 3sz7_A HSC70 cochaperone (SGT) 98.3 1E-05 3.6E-10 65.3 11.7 96 284-382 10-105 (164)
164 4gcn_A Protein STI-1; structur 98.2 2E-05 7E-10 60.5 12.6 92 219-313 10-111 (127)
165 3dss_A Geranylgeranyl transfer 98.2 0.00045 1.5E-08 62.1 22.8 180 233-419 90-306 (331)
166 2dba_A Smooth muscle cell asso 98.2 3.3E-05 1.1E-09 60.8 13.5 110 283-396 26-141 (148)
167 4b4t_Q 26S proteasome regulato 98.2 7.9E-05 2.7E-09 70.7 18.2 191 226-416 13-244 (434)
168 3q49_B STIP1 homology and U bo 98.2 1.5E-05 5E-10 62.0 10.8 97 283-382 7-103 (137)
169 3dss_A Geranylgeranyl transfer 98.2 0.00042 1.4E-08 62.3 21.4 217 229-459 41-304 (331)
170 2kck_A TPR repeat; tetratricop 98.2 1.1E-05 3.8E-10 59.9 9.6 98 320-419 6-108 (112)
171 4b4t_Q 26S proteasome regulato 98.2 2.4E-05 8.2E-10 74.3 14.1 196 261-457 11-243 (434)
172 1wao_1 Serine/threonine protei 98.1 5.4E-06 1.8E-10 79.8 8.9 119 327-455 13-135 (477)
173 1elr_A TPR2A-domain of HOP; HO 98.1 3.2E-05 1.1E-09 59.2 11.5 94 218-314 5-108 (131)
174 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.2E-10 61.6 8.9 95 323-419 7-110 (131)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.9E-05 6.4E-10 75.6 11.5 158 269-456 249-412 (457)
176 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.6E-10 62.7 9.9 96 323-418 52-159 (164)
177 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.6E-10 63.0 9.4 136 321-458 10-157 (164)
178 2xev_A YBGF; tetratricopeptide 98.0 5.8E-05 2E-09 57.8 11.7 92 326-419 8-107 (129)
179 2xev_A YBGF; tetratricopeptide 98.0 2.2E-05 7.7E-10 60.2 9.2 93 360-460 6-106 (129)
180 1hxi_A PEX5, peroxisome target 98.0 2E-05 6.7E-10 60.0 8.5 95 323-419 20-116 (121)
181 1wao_1 Serine/threonine protei 98.0 4.5E-05 1.6E-09 73.3 12.0 118 260-380 12-134 (477)
182 2hr2_A Hypothetical protein; a 98.0 3.7E-05 1.3E-09 60.5 9.3 91 360-458 15-130 (159)
183 1ihg_A Cyclophilin 40; ppiase 98.0 5.4E-05 1.8E-09 70.1 11.9 137 286-451 224-362 (370)
184 3rkv_A Putative peptidylprolyl 97.9 3E-05 1E-09 62.4 8.6 100 320-419 11-128 (162)
185 3rkv_A Putative peptidylprolyl 97.9 3.2E-05 1.1E-09 62.2 8.4 103 285-389 11-131 (162)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 2.2E-05 7.6E-10 71.8 8.2 148 285-460 179-329 (338)
187 3k9i_A BH0479 protein; putativ 97.9 1.2E-05 4E-10 60.8 5.3 86 333-419 3-92 (117)
188 1dce_A Protein (RAB geranylger 97.9 0.00088 3E-08 65.6 19.7 167 271-448 46-244 (567)
189 3k9i_A BH0479 protein; putativ 97.9 1.2E-05 4E-10 60.8 5.1 84 368-459 2-90 (117)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00022 7.6E-09 68.2 13.9 95 285-382 317-412 (457)
191 1ihg_A Cyclophilin 40; ppiase 97.8 0.00019 6.4E-09 66.5 12.5 118 256-376 225-361 (370)
192 2if4_A ATFKBP42; FKBP-like, al 97.8 6.8E-05 2.3E-09 68.6 9.5 148 253-419 178-330 (338)
193 3n71_A Histone lysine methyltr 97.8 5.2E-05 1.8E-09 72.5 8.2 127 329-460 318-465 (490)
194 2l6j_A TPR repeat-containing p 97.8 1.8E-05 6.1E-10 58.8 3.8 93 355-455 3-103 (111)
195 2kat_A Uncharacterized protein 97.6 0.00017 5.9E-09 53.9 7.7 80 338-419 3-84 (115)
196 2hr2_A Hypothetical protein; a 97.6 0.00037 1.3E-08 54.8 9.0 62 287-348 59-130 (159)
197 1na3_A Designed protein CTPR2; 97.6 0.00042 1.4E-08 48.9 8.7 81 356-444 9-91 (91)
198 3ma5_A Tetratricopeptide repea 97.6 0.00046 1.6E-08 50.1 9.1 63 387-457 6-68 (100)
199 3n71_A Histone lysine methyltr 97.5 0.00057 1.9E-08 65.4 11.2 88 193-280 322-419 (490)
200 1dce_A Protein (RAB geranylger 97.5 0.0026 9E-08 62.3 15.4 170 231-406 43-244 (567)
201 1klx_A Cysteine rich protein B 97.4 0.0026 8.8E-08 49.3 12.0 112 299-419 9-128 (138)
202 1klx_A Cysteine rich protein B 97.4 0.0033 1.1E-07 48.7 12.6 106 268-382 9-123 (138)
203 2l6j_A TPR repeat-containing p 97.4 0.00021 7.1E-09 52.8 5.5 61 287-348 6-66 (111)
204 3ma5_A Tetratricopeptide repea 97.3 0.0022 7.4E-08 46.4 9.4 63 216-281 6-68 (100)
205 2kat_A Uncharacterized protein 97.2 0.0031 1.1E-07 46.8 10.2 77 199-281 4-80 (115)
206 1na3_A Designed protein CTPR2; 97.2 0.0038 1.3E-07 43.7 9.9 59 289-348 13-71 (91)
207 3bee_A Putative YFRE protein; 97.1 0.0039 1.3E-07 44.3 9.4 69 386-462 4-75 (93)
208 1zu2_A Mitochondrial import re 97.1 0.001 3.5E-08 52.2 6.1 95 229-328 14-132 (158)
209 1zu2_A Mitochondrial import re 97.0 0.0011 3.8E-08 52.0 6.1 86 332-419 14-122 (158)
210 1qsa_A Protein (soluble lytic 96.9 0.36 1.2E-05 47.4 23.6 255 144-416 72-347 (618)
211 1wy6_A Hypothetical protein ST 96.8 0.092 3.2E-06 39.2 16.5 141 295-462 17-157 (172)
212 3ly7_A Transcriptional activat 96.7 0.13 4.6E-06 46.4 17.6 68 352-419 273-341 (372)
213 3qww_A SET and MYND domain-con 96.6 0.0022 7.4E-08 60.3 5.9 85 368-457 310-409 (433)
214 3qww_A SET and MYND domain-con 96.6 0.0056 1.9E-07 57.5 8.5 85 332-416 310-410 (433)
215 3qwp_A SET and MYND domain-con 96.5 0.0051 1.7E-07 57.9 7.6 90 363-457 294-398 (429)
216 2kc7_A BFR218_protein; tetratr 96.5 0.0084 2.9E-07 42.9 7.1 59 394-460 6-65 (99)
217 3qwp_A SET and MYND domain-con 96.4 0.013 4.4E-07 55.1 9.7 90 327-416 294-399 (429)
218 2kc7_A BFR218_protein; tetratr 96.4 0.021 7.3E-07 40.7 8.8 58 362-419 6-66 (99)
219 3mkq_A Coatomer beta'-subunit; 96.3 0.036 1.2E-06 57.0 13.1 27 356-382 681-707 (814)
220 3lvg_A Clathrin heavy chain 1; 96.2 0.0015 5.1E-08 60.4 1.7 233 39-305 53-324 (624)
221 3ly7_A Transcriptional activat 96.2 0.11 3.8E-06 46.9 13.8 72 318-392 275-347 (372)
222 3lvg_A Clathrin heavy chain 1; 96.1 0.0004 1.4E-08 64.1 -2.6 238 143-408 53-324 (624)
223 3mkq_B Coatomer subunit alpha; 96.0 0.28 9.6E-06 39.0 13.9 130 261-414 12-141 (177)
224 3mkq_B Coatomer subunit alpha; 96.0 0.25 8.6E-06 39.3 13.5 130 151-311 12-141 (177)
225 3mkq_A Coatomer beta'-subunit; 95.9 0.22 7.5E-06 51.1 16.8 104 152-281 660-763 (814)
226 3bee_A Putative YFRE protein; 95.9 0.054 1.9E-06 38.2 8.4 67 353-419 3-74 (93)
227 3u64_A Protein TP_0956; tetrat 95.4 0.073 2.5E-06 46.1 8.9 87 373-466 180-276 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.4 0.087 3E-06 38.1 8.3 72 387-459 4-75 (104)
229 2v5f_A Prolyl 4-hydroxylase su 95.3 0.12 4.2E-06 37.3 9.0 64 356-419 5-77 (104)
230 1pc2_A Mitochondria fission pr 94.9 0.14 4.8E-06 39.6 8.4 83 335-419 13-102 (152)
231 1wy6_A Hypothetical protein ST 94.9 0.85 2.9E-05 34.2 13.5 65 287-353 93-157 (172)
232 1pc2_A Mitochondria fission pr 94.9 0.13 4.3E-06 39.9 8.0 82 372-460 14-101 (152)
233 3u64_A Protein TP_0956; tetrat 94.8 0.19 6.6E-06 43.5 9.9 81 336-419 179-271 (301)
234 4h7y_A Dual specificity protei 94.5 0.43 1.5E-05 36.6 9.9 50 369-419 73-125 (161)
235 4gns_B Protein CSD3, chitin bi 94.5 0.56 1.9E-05 47.0 13.7 55 395-457 344-398 (754)
236 2wpv_A GET4, UPF0363 protein Y 93.2 4.2 0.00014 35.8 19.5 192 125-349 13-217 (312)
237 2ff4_A Probable regulatory pro 93.1 0.25 8.6E-06 45.6 8.0 69 391-467 174-247 (388)
238 1nzn_A CGI-135 protein, fissio 92.7 1.8 6E-05 32.2 10.4 86 332-419 13-105 (126)
239 3lpz_A GET4 (YOR164C homolog); 92.7 5.1 0.00017 35.6 21.3 191 125-348 12-215 (336)
240 4ady_A RPN2, 26S proteasome re 92.7 10 0.00035 39.0 21.8 119 260-382 496-620 (963)
241 4h7y_A Dual specificity protei 92.2 0.47 1.6E-05 36.3 6.8 54 400-461 72-125 (161)
242 1nzn_A CGI-135 protein, fissio 90.5 1.1 3.6E-05 33.4 7.2 85 370-460 15-104 (126)
243 2uwj_G Type III export protein 90.2 3.5 0.00012 28.8 9.0 86 231-323 20-105 (115)
244 4fhn_B Nucleoporin NUP120; pro 89.9 7.7 0.00026 41.5 16.1 163 148-335 816-986 (1139)
245 4fhn_B Nucleoporin NUP120; pro 89.9 6.5 0.00022 42.0 15.5 120 253-375 841-990 (1139)
246 2p58_C Putative type III secre 89.8 3.8 0.00013 28.7 9.9 87 231-324 21-107 (116)
247 1v54_E Cytochrome C oxidase po 89.0 2 6.8E-05 30.2 7.0 63 300-364 25-87 (109)
248 4gns_B Protein CSD3, chitin bi 87.7 1.7 5.7E-05 43.6 8.6 127 148-281 252-398 (754)
249 1y8m_A FIS1; mitochondria, unk 87.5 5.3 0.00018 30.3 9.2 67 353-419 36-108 (144)
250 3txn_A 26S proteasome regulato 87.4 17 0.00058 33.2 17.5 166 217-382 19-207 (394)
251 2ff4_A Probable regulatory pro 87.1 2 6.9E-05 39.5 8.3 53 326-380 177-229 (388)
252 4b4t_P 26S proteasome regulato 87.0 20 0.00068 33.5 16.9 187 193-382 29-244 (445)
253 4ady_A RPN2, 26S proteasome re 86.9 30 0.001 35.6 30.2 163 229-397 502-670 (963)
254 1v54_E Cytochrome C oxidase po 86.7 5.1 0.00017 28.2 7.9 55 376-438 33-87 (109)
255 3ffl_A Anaphase-promoting comp 86.7 3.9 0.00013 32.0 8.3 125 245-383 11-149 (167)
256 2y69_E Cytochrome C oxidase su 84.1 4.4 0.00015 30.2 7.0 63 300-364 68-130 (152)
257 3o48_A Mitochondria fission 1 83.6 4 0.00014 30.5 6.8 67 353-419 37-109 (134)
258 3ffl_A Anaphase-promoting comp 83.5 9.6 0.00033 29.8 9.2 125 210-348 11-150 (167)
259 4a1g_A Mitotic checkpoint seri 81.7 11 0.00037 29.1 8.8 72 71-145 65-137 (152)
260 2wpv_A GET4, UPF0363 protein Y 80.8 29 0.00098 30.5 16.0 151 255-417 34-217 (312)
261 2uwj_G Type III export protein 79.7 13 0.00045 26.0 10.0 77 122-207 19-95 (115)
262 3esl_A Checkpoint serine/threo 79.6 16 0.00055 29.6 9.5 81 212-293 72-154 (202)
263 2p58_C Putative type III secre 79.2 14 0.00048 25.9 10.6 77 122-207 20-96 (116)
264 3esl_A Checkpoint serine/threo 76.7 28 0.00097 28.1 10.5 51 369-419 92-146 (202)
265 1zbp_A Hypothetical protein VP 75.4 7.1 0.00024 33.3 6.6 57 396-460 5-61 (273)
266 2wvi_A Mitotic checkpoint seri 75.3 25 0.00085 27.4 9.2 72 71-145 60-132 (164)
267 4a1g_A Mitotic checkpoint seri 75.0 24 0.00082 27.1 8.9 77 212-292 63-139 (152)
268 2y69_E Cytochrome C oxidase su 74.6 24 0.00084 26.4 9.4 56 375-438 75-130 (152)
269 1wdy_A 2-5A-dependent ribonucl 73.1 15 0.00052 31.3 8.8 50 229-278 191-240 (285)
270 3ltm_A Alpha-REP4; protein eng 71.8 38 0.0013 27.3 17.7 60 253-313 125-184 (211)
271 3lpz_A GET4 (YOR164C homolog); 71.2 55 0.0019 29.0 20.2 148 256-416 37-215 (336)
272 4b4t_P 26S proteasome regulato 71.0 68 0.0023 29.9 21.1 54 258-311 141-203 (445)
273 4b4t_R RPN7, 26S proteasome re 70.5 5.1 0.00018 37.4 5.2 99 321-419 132-239 (429)
274 3o48_A Mitochondria fission 1 70.3 31 0.0011 25.7 8.8 72 315-387 35-110 (134)
275 4b4t_R RPN7, 26S proteasome re 70.0 20 0.00069 33.3 9.2 96 218-313 132-236 (429)
276 1zbp_A Hypothetical protein VP 69.3 53 0.0018 28.0 13.0 117 293-419 5-131 (273)
277 3ltm_A Alpha-REP4; protein eng 69.1 43 0.0015 26.9 18.8 92 252-348 93-184 (211)
278 1qsa_A Protein (soluble lytic 68.0 95 0.0032 30.4 33.4 345 26-412 57-437 (618)
279 2nsz_A Programmed cell death p 67.4 32 0.0011 25.6 8.1 63 257-319 10-77 (129)
280 3txn_A 26S proteasome regulato 65.3 82 0.0028 28.7 25.2 293 145-461 20-345 (394)
281 2ion_A PDCD4, programmed cell 60.3 27 0.00094 26.8 6.7 63 257-319 12-79 (152)
282 1wdy_A 2-5A-dependent ribonucl 58.4 34 0.0012 29.0 8.0 50 333-383 192-243 (285)
283 1y8m_A FIS1; mitochondria, unk 56.5 62 0.0021 24.5 10.0 70 317-387 36-109 (144)
284 4aez_C MAD3, mitotic spindle c 53.4 49 0.0017 27.3 7.3 77 212-292 112-188 (223)
285 2wvi_A Mitotic checkpoint seri 53.1 79 0.0027 24.6 9.6 68 352-419 59-127 (164)
286 2nsz_A Programmed cell death p 51.3 49 0.0017 24.5 6.6 61 148-215 11-76 (129)
287 3mv2_A Coatomer subunit alpha; 49.3 1.4E+02 0.0047 26.3 10.5 49 371-419 185-238 (325)
288 1n11_A Ankyrin; clathrin, BAND 49.1 53 0.0018 30.2 8.2 326 48-420 19-369 (437)
289 3ltj_A Alpharep-4; protein eng 47.2 1E+02 0.0036 24.3 19.9 47 253-299 120-166 (201)
290 3eiq_C Programmed cell death p 46.5 1.6E+02 0.0056 26.3 16.6 81 287-369 219-301 (358)
291 3eu9_A Huntingtin-interacting 46.4 63 0.0021 26.3 7.6 13 57-69 20-32 (240)
292 2zu6_B Programmed cell death p 44.7 1.6E+02 0.0054 25.7 13.9 79 288-368 169-249 (307)
293 4aez_C MAD3, mitotic spindle c 44.0 1.3E+02 0.0046 24.7 14.5 70 71-143 114-184 (223)
294 2ion_A PDCD4, programmed cell 43.0 74 0.0025 24.4 6.6 26 148-173 13-38 (152)
295 1ug3_A EIF4GI, eukaryotic prot 42.0 1.7E+02 0.0057 26.0 9.8 24 359-382 144-167 (339)
296 4b4t_S RPN3, 26S proteasome re 41.0 2.4E+02 0.0082 26.8 11.1 62 253-314 230-299 (523)
297 3kea_A K1L; tropism, ANK repea 40.8 98 0.0034 26.4 8.1 22 259-280 64-85 (285)
298 2d2s_A Exocyst complex compone 39.8 94 0.0032 25.9 7.3 85 292-380 25-115 (235)
299 2d2s_A Exocyst complex compone 39.2 1.1E+02 0.0036 25.6 7.5 28 429-456 90-117 (235)
300 4gq2_M Nucleoporin NUP120; bet 38.4 2.1E+02 0.0071 29.8 11.2 108 260-370 816-950 (950)
301 4gq2_M Nucleoporin NUP120; bet 37.6 2.3E+02 0.008 29.4 11.4 128 149-299 815-950 (950)
302 1bpo_A Protein (clathrin); cla 37.1 2.6E+02 0.009 26.1 10.1 79 299-382 343-421 (494)
303 2fe3_A Peroxide operon regulat 36.9 95 0.0032 23.4 6.4 62 309-372 11-72 (145)
304 3ltj_A Alpharep-4; protein eng 36.6 1.5E+02 0.0053 23.2 20.5 153 253-416 27-179 (201)
305 2r9g_A AAA ATPase, central reg 35.1 1.7E+02 0.0059 23.6 7.6 66 178-248 14-84 (204)
306 3ygs_P Procaspase 9; apoptosis 34.8 67 0.0023 22.3 4.8 39 268-306 51-89 (97)
307 1ug3_A EIF4GI, eukaryotic prot 32.8 73 0.0025 28.4 5.9 24 256-279 143-166 (339)
308 1k1a_A B-cell lymphoma 3-encod 32.4 89 0.0031 25.4 6.3 184 224-420 13-208 (241)
309 1k1a_A B-cell lymphoma 3-encod 32.4 55 0.0019 26.8 4.9 141 19-170 20-173 (241)
310 3b7b_A Euchromatic histone-lys 31.4 1.1E+02 0.0037 24.9 6.7 41 130-170 25-67 (237)
311 2xig_A Ferric uptake regulatio 31.4 1.4E+02 0.0049 22.5 6.7 62 309-372 16-77 (150)
312 3bqo_A Telomeric repeat-bindin 30.9 2.1E+02 0.0071 23.0 8.0 25 395-419 124-148 (211)
313 3ljn_A Hypothetical protein; a 29.8 1E+02 0.0036 27.3 6.6 88 105-206 17-107 (364)
314 1mzb_A Ferric uptake regulatio 29.5 1.2E+02 0.0041 22.5 5.8 59 311-371 9-68 (136)
315 3eu9_A Huntingtin-interacting 29.2 82 0.0028 25.5 5.5 182 259-461 44-238 (240)
316 2fu4_A Ferric uptake regulatio 29.1 1.2E+02 0.0042 19.8 6.0 60 310-371 7-67 (83)
317 2w57_A Ferric uptake regulatio 28.8 1.3E+02 0.0044 22.8 6.0 62 309-372 6-68 (150)
318 2zu6_B Programmed cell death p 28.0 3E+02 0.01 23.9 12.7 58 323-382 169-228 (307)
319 2keb_A DNA polymerase subunit 28.0 1.5E+02 0.0053 20.6 7.2 65 85-151 24-89 (101)
320 2fe3_A Peroxide operon regulat 27.9 1.9E+02 0.0065 21.6 7.2 64 93-161 10-73 (145)
321 4ets_A Ferric uptake regulatio 27.0 1.2E+02 0.0042 23.4 5.6 70 302-372 14-85 (162)
322 3b7b_A Euchromatic histone-lys 26.9 1.3E+02 0.0044 24.4 6.3 41 27-70 26-68 (237)
323 3bge_A Predicted ATPase; struc 26.8 2.5E+02 0.0085 22.6 7.9 53 296-348 18-75 (201)
324 2p1h_A APAF-1, apoptotic prote 26.6 1.5E+02 0.0052 20.1 7.6 63 236-304 24-86 (94)
325 3ljn_A Hypothetical protein; a 26.4 1.2E+02 0.0041 26.8 6.4 220 214-455 15-266 (364)
326 4b4t_S RPN3, 26S proteasome re 26.4 1.6E+02 0.0056 27.9 7.1 26 321-346 232-257 (523)
327 2xig_A Ferric uptake regulatio 26.2 2.1E+02 0.0073 21.6 7.9 65 93-162 15-79 (150)
328 3qye_A TBC1 domain family memb 25.8 3.4E+02 0.011 23.8 9.8 40 131-170 210-249 (331)
329 2qq8_A TBC1 domain family memb 25.7 2E+02 0.0069 25.3 7.6 77 306-383 214-293 (334)
330 3ctd_A Putative ATPase, AAA fa 25.2 2.3E+02 0.008 23.0 6.8 71 174-248 31-106 (213)
331 3eyy_A Putative iron uptake re 25.0 1.2E+02 0.0042 22.8 5.2 59 310-371 9-67 (145)
332 2r9g_A AAA ATPase, central reg 24.9 2.7E+02 0.0093 22.4 8.9 37 297-334 26-62 (204)
333 2o03_A Probable zinc uptake re 24.6 1.1E+02 0.0038 22.5 4.8 40 293-332 18-57 (131)
334 2b7e_A PRE-mRNA processing pro 24.4 75 0.0025 19.7 3.0 34 86-120 2-36 (59)
335 1zl8_A LIN-7; heterodimer, alp 24.3 1.1E+02 0.0039 18.1 3.5 16 87-102 10-25 (53)
336 1bpo_A Protein (clathrin); cla 24.1 4.4E+02 0.015 24.6 9.6 106 231-342 343-451 (494)
337 3ctd_A Putative ATPase, AAA fa 24.0 2.9E+02 0.01 22.4 8.3 59 296-355 46-109 (213)
338 3qye_A TBC1 domain family memb 23.9 3.6E+02 0.012 23.5 11.3 97 306-403 209-309 (331)
339 1otr_A Protein CUE2; protein-p 22.9 1.1E+02 0.0036 18.2 3.4 29 1-29 14-42 (49)
340 1wgl_A TOLL-interacting protei 22.8 1.1E+02 0.0038 18.9 3.6 34 70-103 21-56 (59)
341 3bge_A Predicted ATPase; struc 22.7 2.6E+02 0.009 22.4 6.6 48 180-231 9-56 (201)
342 2qx5_A Nucleoporin NIC96; mRNA 22.6 5.6E+02 0.019 25.2 12.2 214 224-456 301-564 (661)
343 2keb_A DNA polymerase subunit 22.5 2E+02 0.0069 20.0 7.2 60 303-362 27-88 (101)
344 4fke_A Aminopeptidase N; zinc 22.5 6.5E+02 0.022 25.9 15.3 90 222-313 691-786 (909)
345 4ets_A Ferric uptake regulatio 22.4 2.4E+02 0.0083 21.6 6.5 70 88-162 15-87 (162)
346 4b4t_O 26S proteasome regulato 22.4 1.6E+02 0.0056 26.7 6.4 22 394-415 133-154 (393)
347 2f6m_A Suppressor protein STP2 22.3 1.3E+02 0.0043 19.1 3.8 48 390-445 4-51 (65)
348 2p1h_A APAF-1, apoptotic prote 22.2 1.9E+02 0.0065 19.6 5.4 56 128-187 24-79 (94)
349 3jxi_A Vanilloid receptor-rela 22.1 1.2E+02 0.0041 25.1 5.2 56 11-69 7-72 (260)
350 3m0z_A Putative aldolase; MCSG 22.1 1.3E+02 0.0045 24.8 4.8 81 372-458 147-246 (249)
351 3eyy_A Putative iron uptake re 22.0 1.7E+02 0.0059 21.9 5.5 43 291-334 24-66 (145)
352 1mzb_A Ferric uptake regulatio 21.9 2.4E+02 0.0083 20.7 6.4 45 290-334 22-67 (136)
353 2y1l_E Darpin-8.4; hydrolase-i 21.7 2E+02 0.0068 21.7 6.1 13 57-69 58-70 (169)
354 2aja_A Ankyrin repeat family p 21.7 4.1E+02 0.014 23.8 8.9 14 57-70 103-116 (376)
355 3ygs_P Procaspase 9; apoptosis 21.6 91 0.0031 21.6 3.5 30 158-187 51-80 (97)
356 3mwm_A ZUR, putative metal upt 21.3 1E+02 0.0035 23.0 4.0 44 326-370 19-62 (139)
357 3eiq_C Programmed cell death p 21.0 4.5E+02 0.015 23.5 15.9 25 258-282 58-82 (358)
358 3mwm_A ZUR, putative metal upt 21.0 1.5E+02 0.0051 22.1 4.9 50 110-162 17-66 (139)
359 2qfz_A TBC1 domain family memb 20.8 2.5E+02 0.0086 24.8 7.2 76 93-172 232-314 (345)
360 2o03_A Probable zinc uptake re 20.5 1.9E+02 0.0066 21.1 5.4 49 111-162 15-63 (131)
361 2bn5_A PSI; nuclear protein, s 20.3 1.1E+02 0.0036 16.2 2.5 24 435-458 7-30 (33)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-37 Score=311.91 Aligned_cols=426 Identities=10% Similarity=-0.014 Sum_probs=373.1
Q ss_pred CCCChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCChhhHH
Q 011587 3 SLPGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFLFN 78 (482)
Q Consensus 3 ~~p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ 78 (482)
|.|+...|+.++..+. |++++|..+++.+... .|+..++..+...|... |++++|.++|+.+. .++..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCT---GDYARAKCLLTKEDLYNRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHT---TCHHHHHHHHHHTCGGGTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHc---CcHHHHHHHHHHHhccccchhHHH
Confidence 4567888888888877 8999999999999854 46778888999999999 99999999999984 77888888
Q ss_pred HHhcC----CCCccHHHHHHHHHHC---------------CCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhC
Q 011587 79 TLIRC----TPPQDSVLVFAYWVSK---------------GLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRG 139 (482)
Q Consensus 79 ~ll~~----~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (482)
.++.. |++++|+++|+++... +..+ +..+|+.++.+|.+.| + +++|.++|+++.+.+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~--~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL-EASMCYLRGQVYTNLS-N--FDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH-HHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch-hHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHhC
Confidence 88777 9999999999953322 1122 5789999999999999 9 999999999999875
Q ss_pred CCCchhHHHH--------------------------------------HHHHHHhCCChhHHHHHhccCCC--CCchhHH
Q 011587 140 FMFNVLVATT--------------------------------------LIHFYASNKDISSGKKVFDQMPM--RSSATWN 179 (482)
Q Consensus 140 ~~~~~~~~~~--------------------------------------l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 179 (482)
+.+...+.. ++..|.+.|++++|.++|+++.+ ++..+|+
T Consensus 231 -p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 231 -AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp -TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred -chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 223333333 35566788999999999999987 7999999
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA 259 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~ 259 (482)
.++.+|.+ .|++++|+.+|+++. ..+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.
T Consensus 310 ~l~~~~~~-----~g~~~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 378 (597)
T 2xpi_A 310 CKADTLFV-----RSRFIDVLAITTKIL--EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLA 378 (597)
T ss_dssp HHHHHHHH-----TTCHHHHHHHHHHHH--HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHH
T ss_pred HHHHHHHH-----hcCHHHHHHHHHHHH--HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHH
Confidence 99999999 999999999999997 333 3367789999999999999999999999999776 678899999
Q ss_pred HHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999863 467899999999999999999999999999875 34788999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHhcCCHhHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPD--AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a 407 (482)
++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|
T Consensus 458 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 458 LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999983 3557899999999999999999999999988 45787 78999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.++++.+.+| .+..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 536 ~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 536 IDALNQGLLLST--------NDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHSS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999998 789999999999999999999999999998653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-34 Score=286.96 Aligned_cols=405 Identities=7% Similarity=-0.095 Sum_probs=350.6
Q ss_pred CChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCC----------
Q 011587 5 PGHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPP---------- 72 (482)
Q Consensus 5 p~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~---------- 72 (482)
||..++..+...+. |+++.|..+++.+.. .++++.+++.++..|.+. |++++|.++|+.....
T Consensus 115 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHT---TCHHHHHHHHCSSCTTC---------
T ss_pred CCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHH---hhHHHHHHHHhccCCccccccccccc
Confidence 67777777766665 899999999887753 478889999999999999 9999999999964432
Q ss_pred ---------ChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHH---------------------------
Q 011587 73 ---------NLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFA--------------------------- 112 (482)
Q Consensus 73 ---------~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~l--------------------------- 112 (482)
+..+|+.+... |++++|+++|++|.+.+ |.+...+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 36788888777 99999999999999865 4244444433
Q ss_pred -----------HHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC---CCCchhH
Q 011587 113 -----------LGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP---MRSSATW 178 (482)
Q Consensus 113 -----------l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 178 (482)
+..|.+.| + +++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~g-~--~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHED-E--LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHH-H--HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHHHHHHHHHHHHcCcc-h--HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH
Confidence 33444555 6 99999999998876 6889999999999999999999999999986 2478899
Q ss_pred HHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHH
Q 011587 179 NAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGT 258 (482)
Q Consensus 179 ~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 258 (482)
+.++.++.+ .|++++|..+++++. . ..+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+
T Consensus 343 ~~l~~~~~~-----~g~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 411 (597)
T 2xpi_A 343 PLHLASLHE-----SGEKNKLYLISNDLV--D-RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWI 411 (597)
T ss_dssp HHHHHHHHH-----HTCHHHHHHHHHHHH--H-HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred HHHHHHHHH-----hCCHHHHHHHHHHHH--h-hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 999999999 999999999999996 2 234578899999999999999999999999999876 66888999
Q ss_pred HHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999864 478899999999999999999999999998864 3478899999999999999
Q ss_pred HHHHHHHHHHhHHhc---CCCcC--HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 336 VEEGLHLFDNMKSKW---GVEPH--IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
+++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++ ...| +..+|..+..+|.+.|++++|.
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999998732 55777 789999999999999999999999988 3334 8899999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
+.++++++..| .+...+..+..+|.
T Consensus 571 ~~~~~~l~~~p--------~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 571 THLHESLAISP--------NEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHCT--------TCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCC--------CChHHHHHHHHHHh
Confidence 99999999999 78888888877664
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.6e-30 Score=249.63 Aligned_cols=212 Identities=11% Similarity=0.031 Sum_probs=163.6
Q ss_pred ccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 011587 87 QDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKV 166 (482)
Q Consensus 87 ~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 166 (482)
..+..+.+.+.+.+..+.....++.+|.+|++.| + +++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~--~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--- 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-D--VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--- 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSC-C--HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-C--HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---
Confidence 3455666777777766523346888899999888 8 999999999999999999999999999988887765432
Q ss_pred hccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 011587 167 FDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKT 246 (482)
Q Consensus 167 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 246 (482)
.+ .+..++|.++|++|. ..|+.||..||+++|.+|++.|++++|.+++++|.+.
T Consensus 81 -------------------~~-----~~~l~~A~~lf~~M~--~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 134 (501)
T 4g26_A 81 -------------------SP-----NPGLSRGFDIFKQMI--VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF 134 (501)
T ss_dssp -------------------SC-----CHHHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred -------------------hh-----cchHHHHHHHHHHHH--HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 23 677899999999999 9999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 247 FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR----EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 247 ~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
|+ .|+..+|+++|.+|++.|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|..|+..|
T Consensus 135 g~--~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 135 GI--QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp TC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred CC--CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 99 5588888888888888888888888887776 36777788888888888888888888888877777778888
Q ss_pred HHHHHHHHhc
Q 011587 323 FTSLFAACCH 332 (482)
Q Consensus 323 ~~~ll~~~~~ 332 (482)
|+.++..|+.
T Consensus 213 ~~~l~~~F~s 222 (501)
T 4g26_A 213 FDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 8777777765
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.2e-29 Score=241.96 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=161.0
Q ss_pred HHHHHHHHhhhccCCCCcCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTD-TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLI 276 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~ 276 (482)
.+..+.+.++ ..+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+ .||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~--~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv--~pd~~tyn~Li~~c~~~~~~~~~--- 80 (501)
T 4g26_A 8 PSENLSRKAK--KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV--QLSQYHYNVLLYVCSLAEAATES--- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTTCCCCSSS---
T ss_pred hHHHHHHHHH--HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhCCchhhh---
Confidence 3556666776 66666544 4688889999999999999999999999999 55999999999999887754322
Q ss_pred HHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH
Q 011587 277 FSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI 356 (482)
Q Consensus 277 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (482)
.+.+..++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+. |+.||.
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~ 140 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRL 140 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcc
Confidence 223456778888888888888888888888888888888888888888888884 888888
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
.+|+++|.+|++.|++++|.++|++| |+.||..||++||.+|++.|+.++|.+++++|.+.+. .|+..||
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-------~ps~~T~ 213 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-------QVSKSTF 213 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------SBCHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-------CcCHHHH
Confidence 88888888888888888888888888 7888888888888888888888888888888888777 4888888
Q ss_pred HHHHHHHHhC
Q 011587 434 VALSNIYASA 443 (482)
Q Consensus 434 ~~l~~~~~~~ 443 (482)
+.++..|...
T Consensus 214 ~~l~~~F~s~ 223 (501)
T 4g26_A 214 DMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHSH
T ss_pred HHHHHHHhcC
Confidence 8888877653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-26 Score=219.55 Aligned_cols=360 Identities=11% Similarity=0.004 Sum_probs=307.1
Q ss_pred CChHHHHHHhhcCC--CCChhhHHHHhcC-----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHH
Q 011587 57 QSTKIVHFVFTHFD--PPNLFLFNTLIRC-----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGR 129 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~~~~~~~ll~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~ 129 (482)
|++++|.+.++... .|+.......+.. |++++|...++...+.. |.+..+|..+...+.+.| + +++|.
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g-~--~~~A~ 87 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG-Q--LQEAI 87 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-C--HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC-C--HHHHH
Confidence 77777777776654 4443333333222 88888888888887753 558889999999999999 9 99999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHHHHHHhcCCcccccchHHHHHHHHHh
Q 011587 130 QIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m 206 (482)
..|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+.. .|++++|.+.|+++
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-----LGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----ccCHHHHHHHHHHH
Confidence 9999999874 44567899999999999999999999998763 4 45667788888888 99999999999998
Q ss_pred hhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C
Q 011587 207 LVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K 283 (482)
Q Consensus 207 ~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 283 (482)
. . ..| +..+|..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ |
T Consensus 162 l--~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 162 I--E--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp H--H--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred H--H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 7 3 234 57789999999999999999999999999987 67888999999999999999999999998863 3
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 284 -NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 284 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+..++..+..+|.+.|++++|...|+++.+.+. .+..++..+...+.+.|++++|...|+++.+ ..+.+..++..+
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 311 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNL 311 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHH
Confidence 678899999999999999999999999998743 3577899999999999999999999999998 356788899999
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|...++++++..| .+...|..+...+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--------TFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--------TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHhHHHHH
Confidence 99999999999999999988 5555 678899999999999999999999999999988 6788888888888
Q ss_pred HhCCC
Q 011587 441 ASAER 445 (482)
Q Consensus 441 ~~~g~ 445 (482)
...|+
T Consensus 384 ~~~~~ 388 (388)
T 1w3b_A 384 KEMQD 388 (388)
T ss_dssp HHTCC
T ss_pred HHccC
Confidence 77663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.1e-26 Score=218.23 Aligned_cols=347 Identities=10% Similarity=0.012 Sum_probs=305.9
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|.+.+..+.+.. |.+...+..+...+...+ + +++|...++..++.. +.+..+|..+...|.+.|++++|
T Consensus 13 g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~-~--~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCR-R--LDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 89999999999998854 646666777777777777 8 999999999999874 66788999999999999999999
Q ss_pred HHHhccCC--CC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccCchHHHHHH
Q 011587 164 KKVFDQMP--MR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLGLLEFGACV 239 (482)
Q Consensus 164 ~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 239 (482)
.+.|+++. .| +..+|..+..++.. .|++++|++.|+++. . ..|+ ...+..+...+...|++++|.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al--~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVA-----AGDMEGAVQAYVSAL--Q--YNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-----HSCSSHHHHHHHHHH--H--HCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--H--hCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 99999876 34 56689999999999 999999999999987 3 3454 45677788889999999999999
Q ss_pred HHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 240 HGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 240 ~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
++++.+.. +.+..++..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++......
T Consensus 158 ~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 158 YLKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999987 67888999999999999999999999999874 3567899999999999999999999999987642
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSL 394 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 394 (482)
.+..++..+...+.+.|++++|...|+++.+. .+.+..+|..+...+.+.|++++|.+.|+++ ..+.+..++..+
T Consensus 235 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 235 -NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 35788899999999999999999999999983 3456788999999999999999999999988 334578899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
...+...|++++|...++++.+..| .+..++..++.+|.+.|++++|...++++.+.
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFP--------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999988 78899999999999999999999999999863
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-22 Score=195.72 Aligned_cols=390 Identities=8% Similarity=-0.065 Sum_probs=301.0
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHhhcCC--CCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHh
Q 011587 43 AQLIQLYCTKKASPQSTKIVHFVFTHFD--PPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSC 116 (482)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~ 116 (482)
+......+... |++++|...|+... .|+...|..+..+ |++++|++.|+.+.+.+ |.+..++..+..++
T Consensus 9 ~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 34455666777 89999999888876 5777777666555 89999999999888854 54777888888888
Q ss_pred hhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHh-----------------------------
Q 011587 117 ARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVF----------------------------- 167 (482)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----------------------------- 167 (482)
...| + +++|...|+++.+.+ +++......++..+........+.+.+
T Consensus 84 ~~~g-~--~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 84 EGLG-K--FADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHTT-C--HHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHh-h--HHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 8888 8 999999999888775 334444444444333322222221111
Q ss_pred ---------ccCC---------CC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhcc-----CCC--------Cc
Q 011587 168 ---------DQMP---------MR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDV-----SGV--------KP 215 (482)
Q Consensus 168 ---------~~~~---------~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~-----~~~--------~p 215 (482)
.... .| +...+......+..... .|++++|+..|+++. . ... +.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS--PESYDKADESFTKAA--RLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHHHH--HHHHHHTTTSTTCHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHH--HHhhhhhccCccccccChH
Confidence 1110 01 12223222222221001 789999999999987 3 111 22
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+..++..+...+...|++++|...++++.+.. +. ...+..+...|...|++++|...++++.+ .+..+|..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 45678888999999999999999999999987 33 88899999999999999999999999875 3677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
..|...|++++|...+++..+.... +...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999887533 6678888999999999999999999999984 345678899999999999999
Q ss_pred HHHHHHHHcC-CC---CCC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 373 EEAYNFIMGI-PI---KPD----AILWRSLLSACNV---HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 373 ~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
++|.+.++++ .. .++ ...+..+...+.. .|++++|...++++.+..| .+..++..+..+|.
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--------RSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHH
Confidence 9999999887 21 222 4488889999999 9999999999999999998 78899999999999
Q ss_pred hCCCchHHHHHHHHhHhcC
Q 011587 442 SAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~~ 460 (482)
+.|++++|...+++..+..
T Consensus 461 ~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 461 QQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhc
Confidence 9999999999999988654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.1e-21 Score=189.51 Aligned_cols=337 Identities=8% Similarity=-0.036 Sum_probs=272.0
Q ss_pred HHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhcc
Q 011587 90 VLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQ 169 (482)
Q Consensus 90 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 169 (482)
...+...... .|.+...+..+...+.+.| + +++|..+|+++++.. +.+..++..+..+|...|++++|...|++
T Consensus 12 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~g-~--~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 12 DLGTENLYFQ--SMADVEKHLELGKKLLAAG-Q--LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccc--cHHHHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444433 2447778888888888888 8 999999999999874 55788899999999999999999999998
Q ss_pred CCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH----HHHHHH------------HHHhhcc
Q 011587 170 MPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD----TTMVCV------------LSVSSQL 230 (482)
Q Consensus 170 ~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~l------------~~~~~~~ 230 (482)
+.+ .+..+|..+...|.. .|++++|...|+++. . ..|+. ..+..+ ...+...
T Consensus 86 al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLK-----QGKLDEAEDDFKKVL--K--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--T--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--h--cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 763 367788899999999 999999999999987 3 34543 454444 4458899
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
|++++|...++++.+.. +.+..++..++.+|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|...
T Consensus 157 ~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887 67889999999999999999999999999874 5788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH------------HHHHhccCcHHHHHHHHHHhHHhcCCCcC-----HHHHHHHHHHHhccC
Q 011587 308 LDSMRDCGVKPNAVTFTSL------------FAACCHAGLVEEGLHLFDNMKSKWGVEPH-----IKHYSCIVDLLGRAG 370 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g 370 (482)
|+++..... .+...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|
T Consensus 234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCC
Confidence 999987532 234444444 78899999999999999999984 333 457888999999999
Q ss_pred CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH----------
Q 011587 371 HLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN---------- 438 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 438 (482)
++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++..| .+...+..+..
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE--------NDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--------SCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------chHHHHHHHHHHHHHhhcccc
Confidence 999999999987 4445 789999999999999999999999999999998 67778877773
Q ss_pred --HHHhCC-----CchHHHHHHHHh
Q 011587 439 --IYASAE-----RWPDVESVRKQM 456 (482)
Q Consensus 439 --~~~~~g-----~~~~a~~~~~~m 456 (482)
.|...| +.+++.+.++++
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHH
Confidence 344455 556777777763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.7e-21 Score=188.18 Aligned_cols=340 Identities=10% Similarity=-0.011 Sum_probs=273.4
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHH
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSG 163 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 163 (482)
|++++|+++|+.+.+.. |.+..++..+..++...| + +++|...++++++.+ +.+..++..+..+|.+.|++++|
T Consensus 40 g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g-~--~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMG-K--SKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999888753 547888999999999988 8 999999999999875 45678899999999999999999
Q ss_pred HHHhccCCCC---Cc---hhHHHHH------------HHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHH
Q 011587 164 KKVFDQMPMR---SS---ATWNAMI------------NGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225 (482)
Q Consensus 164 ~~~~~~~~~~---~~---~~~~~li------------~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~ 225 (482)
.+.|+++.+. +. ..+..+. ..+.. .|++++|+..|+++. .. .+.+...+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG-----SGDYTAAIAFLDKIL--EV-CVWDAELRELRAE 185 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--Hh-CCCChHHHHHHHH
Confidence 9999988643 23 5555553 34788 999999999999987 32 2347788999999
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHH-----------
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAM----------- 291 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----------- 291 (482)
++...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+ | +...+..+
T Consensus 186 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 67889999999999999999999999999874 3 44445444
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 292 -ATGMAIHGKGNEAIRLLDSMRDCGVKPN-----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 292 -i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++++.+. .+.+...|..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 78899999999999999999885 344 447888899999999999999999999873 34578899999999
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH------------HHhcC-----CHhHHHHHHHH-HHhcCCCccccc
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA------------CNVHG-----DVALGEKVGKI-LLQLQPEVTFVD 425 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~~~~ 425 (482)
|...|++++|.+.+++. .+.| +...+..+..+ |...| +.+++.+.+++ ..+..|+..
T Consensus 339 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~--- 415 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF--- 415 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC---
T ss_pred HHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC---
Confidence 99999999999999988 6667 45566655532 33344 66778888886 666666311
Q ss_pred ccCC-------chhHHHHHHHHHhCCCchHH
Q 011587 426 VACT-------SEDFVALSNIYASAERWPDV 449 (482)
Q Consensus 426 ~~~~-------~~~~~~l~~~~~~~g~~~~a 449 (482)
++ ...|..+..+|...++.++.
T Consensus 416 --~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 416 --QNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp --CSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred --CCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 22 23666777777777765543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.6e-21 Score=191.71 Aligned_cols=378 Identities=10% Similarity=-0.053 Sum_probs=298.6
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+++.|...++.+.+.. |+...+..+...|... |++++|.+.++... .|+ ...|..+... |++++|..
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV---GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH---hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999987 6888999999999999 99999999999876 343 3455544444 99999999
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh---------------------------------
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR--------------------------------- 138 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--------------------------------- 138 (482)
.|+.+...+ |.+......++..+.... . ...+.+.+..+...
T Consensus 95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 95 DLSVLSLNG--DFNDASIEPMLERNLNKQ-A--MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHSS--SCCGGGTHHHHHHHHHHH-H--HHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHhcC--CCccchHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999876 325555555555544433 2 33333322111100
Q ss_pred --CC---------CCchhHHHHHHHHHHh---CCChhHHHHHhccCCC----------------C-CchhHHHHHHHHhc
Q 011587 139 --GF---------MFNVLVATTLIHFYAS---NKDISSGKKVFDQMPM----------------R-SSATWNAMINGYCS 187 (482)
Q Consensus 139 --~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~ 187 (482)
.. +.+...+..+...+.. .|++++|...|+++.+ | +..+|..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 00 1124444445554554 8999999999987654 1 35678888889999
Q ss_pred CCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC
Q 011587 188 QSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC 267 (482)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~ 267 (482)
.|++++|+..|+++. .. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 250 -----~~~~~~A~~~~~~~l--~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 250 -----KNDPLGAHEDIKKAI--EL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp -----SSCHHHHHHHHHHHH--HH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHH--hh--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHh
Confidence 999999999999987 33 3447788999999999999999999999999877 66788899999999999
Q ss_pred CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 268 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999863 366789999999999999999999999998763 2356788889999999999999999999
Q ss_pred HhHHhcCCCcC----HHHHHHHHHHHhc---cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 345 NMKSKWGVEPH----IKHYSCIVDLLGR---AGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 345 ~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
++.+...-.++ ...+..+...+.. .|++++|.+.+++. ...| +..++..+...+...|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99874222222 4488999999999 99999999999987 3334 67888999999999999999999999999
Q ss_pred hcCC
Q 011587 416 QLQP 419 (482)
Q Consensus 416 ~~~~ 419 (482)
+..|
T Consensus 477 ~~~~ 480 (514)
T 2gw1_A 477 DLAR 480 (514)
T ss_dssp HHCS
T ss_pred Hhcc
Confidence 9998
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.1e-20 Score=184.74 Aligned_cols=248 Identities=10% Similarity=0.007 Sum_probs=209.7
Q ss_pred cchHHHHHHHHHhhhccCCCCcC--------HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 011587 194 DCAFNALVLFRDMLVDVSGVKPT--------DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYS 265 (482)
Q Consensus 194 ~~~~~a~~~~~~m~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~ 265 (482)
+++++|+.+|+++. ...|+ ..++..+...+...|++++|...++.+.+.. + +...+..+...|.
T Consensus 216 ~~~~~A~~~~~~~l----~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---~-~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLL----SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---P-TPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHH----C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---C-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH----HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---C-CchHHHHHHHHHH
Confidence 47899999999987 23343 3357777788899999999999999999986 3 3788999999999
Q ss_pred cCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 011587 266 KCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 342 (482)
..|++++|...|+++.+ .+..+|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998874 46788999999999999999999999999886432 567888899999999999999999
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHhc----------CCH
Q 011587 343 FDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--------PIKPDAILWRSLLSACNVH----------GDV 404 (482)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~----------g~~ 404 (482)
++++.+. .+.+...+..+...+...|++++|.+.|++. ........+......+... |++
T Consensus 367 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 367 FNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 9999984 3556778999999999999999999999886 1112333345556677777 999
Q ss_pred hHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
++|...++++.+..| .+...+..+..+|.+.|++++|...+++..+..
T Consensus 445 ~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 445 NAAIKLLTKACELDP--------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999 788999999999999999999999999987654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.2e-18 Score=162.62 Aligned_cols=311 Identities=7% Similarity=-0.074 Sum_probs=253.7
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC--C-CchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM--R-SSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 181 (482)
+...+..+...+...| + +++|...++++++.. +.+..++..+..++...|++++|...|+...+ | +...|..+
T Consensus 2 ~~~~~~~~~~~~~~~g-~--~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAG-Q--LADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4556677777778877 7 999999999998874 44678888888999999999999999988752 3 66788888
Q ss_pred HHHHhcCCcccccchHHHHHHHHHhhhccCCCCc----CHHHHHHH------------HHHhhccCchHHHHHHHHHHHH
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP----TDTTMVCV------------LSVSSQLGLLEFGACVHGYMEK 245 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~ 245 (482)
...+.. .|++++|+..|++.. ...| +...+..+ ...+...|++++|...++.+.+
T Consensus 78 ~~~~~~-----~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 78 GHLLLK-----QGKLDEAEDDFKKVL----KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHH-----HTCHHHHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCChHHHHHHHHHHH----hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888988 999999999999886 3344 33344444 5788899999999999999999
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 011587 246 TFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT 322 (482)
Q Consensus 246 ~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 322 (482)
.. +.+...+..+...+...|++++|...++++.+ .+..++..+...+...|++++|...|++..+.... +...
T Consensus 149 ~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 224 (359)
T 3ieg_A 149 VC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 224 (359)
T ss_dssp HC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred hC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHH
Confidence 87 67888999999999999999999999999875 46788999999999999999999999999876322 3333
Q ss_pred HH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH----HHHHHHHHHHhccCCHHHHHHHHHcC-CCC
Q 011587 323 FT------------SLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI----KHYSCIVDLLGRAGHLEEAYNFIMGI-PIK 385 (482)
Q Consensus 323 ~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 385 (482)
+. .+...+.+.|++++|...++++.+. . +.+. ..+..+...+...|++++|.+.+++. ...
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 32 2356688999999999999999984 2 2233 33556788999999999999999988 334
Q ss_pred C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 386 P-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 386 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
| +..++..+...+...|++++|...++++++..| .+...+..+..+...
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE--------NDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHH
Confidence 5 788999999999999999999999999999998 677777777766554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=8.4e-19 Score=163.56 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=250.1
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH
Q 011587 143 NVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT 219 (482)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~ 219 (482)
++..+..+...+...|++++|...|+.+.+ .+..+|..+...+.. .|++++|+..|+++. .. .+.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-----MGKSKAALPDLTKVI--AL-KMDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-----ccCHHHHHHHHHHHH--Hh-CCCcchH
Confidence 456788899999999999999999998753 367789999999999 999999999999987 32 2236688
Q ss_pred HHHHHHHhhccCchHHHHHHHHHHHHhCCCCC---CchhHHHHH------------HHHHHcCCChHHHHHHHHhccC--
Q 011587 220 MVCVLSVSSQLGLLEFGACVHGYMEKTFYMPE---NDVFIGTAL------------VDMYSKCGCLDNALLIFSRMRE-- 282 (482)
Q Consensus 220 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~-- 282 (482)
+..+...+...|++++|...++++.+.. + .+...+..+ ...+...|++++|..+++++.+
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998876 5 566666655 6889999999999999999864
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHH-
Q 011587 283 -KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYS- 360 (482)
Q Consensus 283 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 360 (482)
.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+. .+.+...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 227 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH 227 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHH
Confidence 467889999999999999999999999998874 347788999999999999999999999999984 233333333
Q ss_pred -----------HHHHHHhccCCHHHHHHHHHcC-CCCCC-H----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccc
Q 011587 361 -----------CIVDLLGRAGHLEEAYNFIMGI-PIKPD-A----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423 (482)
Q Consensus 361 -----------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 423 (482)
.+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|...++++.+..|
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---- 303 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---- 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc----
Confidence 2366788999999999999987 33343 3 2355577889999999999999999999988
Q ss_pred ccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 424 VDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+..++..+..++.+.|++++|...+++..+..
T Consensus 304 ----~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 304 ----DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999988654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1e-18 Score=172.62 Aligned_cols=375 Identities=11% Similarity=-0.013 Sum_probs=271.5
Q ss_pred cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CCC-hhhHHHHhcC----CCCccHHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PPN-LFLFNTLIRC----TPPQDSVL 91 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~ll~~----~~~~~a~~ 91 (482)
|+++.|...++.+.+.. +.++..+..+...|... |++++|.+.|+... .|+ ...+..+... |++++|++
T Consensus 39 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77888888888877765 44566677777777777 88888888887765 332 3333333333 88888888
Q ss_pred HHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh------CCCCchh--------------------
Q 011587 92 VFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR------GFMFNVL-------------------- 145 (482)
Q Consensus 92 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~-------------------- 145 (482)
.|+ .... .| + .....+..+...+ . ...|...++.+... ...|+..
T Consensus 115 ~~~-~~~~--~~-~--~~~~~~~~~~~~~-~--~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 115 DLS-VLSL--NG-D--FDGASIEPMLERN-L--NKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHH-HHC----------------CHHHHH-H--HHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHH-HHhc--CC-C--CChHHHHHHHHHH-H--HHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 885 3322 12 1 1122233334444 4 55666666666432 0111111
Q ss_pred ----------HHHHHHHHHHhC--------CChhHHHHHhccCCC--CC--------chhHHHHHHHHhcCCcccccchH
Q 011587 146 ----------VATTLIHFYASN--------KDISSGKKVFDQMPM--RS--------SATWNAMINGYCSQSKKAKDCAF 197 (482)
Q Consensus 146 ----------~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~~~~~ 197 (482)
....+...+... |++++|..+|+++.+ |+ ..+|..+...+.. .|+++
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~-----~~~~~ 260 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL-----KNNLL 260 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH-----TTCHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh-----cccHH
Confidence 222222222222 478899999988764 32 2246666677788 89999
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIF 277 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~ 277 (482)
+|+..|++.. . ..|+...+..+...+...|+++.|...++++.+.. +.+..++..+...|...|++++|...|
T Consensus 261 ~A~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 261 DAQVLLQESI--N--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHH--H--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH--h--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999987 3 45668889999999999999999999999999987 668889999999999999999999999
Q ss_pred HhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--
Q 011587 278 SRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV-- 352 (482)
Q Consensus 278 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 352 (482)
+++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99874 356789999999999999999999999998864 335678888999999999999999999998874211
Q ss_pred --CcCHHHHHHHHHHHhcc----------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 353 --EPHIKHYSCIVDLLGRA----------GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 353 --~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
......+..+...+... |++++|...|++. ...| +...+..+...+...|++++|...|+++.+..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11223345556677777 9999999999988 3344 67889999999999999999999999999998
Q ss_pred C
Q 011587 419 P 419 (482)
Q Consensus 419 ~ 419 (482)
|
T Consensus 493 ~ 493 (537)
T 3fp2_A 493 R 493 (537)
T ss_dssp -
T ss_pred C
Confidence 8
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.5e-18 Score=159.90 Aligned_cols=286 Identities=10% Similarity=-0.008 Sum_probs=203.6
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCH
Q 011587 141 MFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTD 217 (482)
Q Consensus 141 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 217 (482)
+.+...+..+...+...|++++|.++|+++.+ .+...+..++..+.. .|++++|...++++. .. .+.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE-----LNKANELFYLSHKLV--DL-YPSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHH-----hhhHHHHHHHHHHHH--Hh-CcCCH
Confidence 44555666677777777777777777777642 245556666677777 777788888777775 21 12345
Q ss_pred HHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMAT 293 (482)
Q Consensus 218 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 293 (482)
..+..+...+...| ++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+ .+..++..+..
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 66777777777777 7777888887777765 55667777788888888888888888877763 24556666777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCcCHHHHHHHHHHH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG-------VEPHIKHYSCIVDLL 366 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~ 366 (482)
.|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 7888888888888888877764 33567777777788888888888888887776311 133456777888888
Q ss_pred hccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH-HhC
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY-ASA 443 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 443 (482)
...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..| .+...+..+..++ ...
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR--------DDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS--------CCHHHHHHHHHHHHTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC--------CchHHHHHHHHHHHHHh
Confidence 8888888888888776 2233 567777788888888888888888888888877 6777777777777 445
Q ss_pred CCc
Q 011587 444 ERW 446 (482)
Q Consensus 444 g~~ 446 (482)
|+.
T Consensus 319 g~~ 321 (330)
T 3hym_B 319 GDS 321 (330)
T ss_dssp TC-
T ss_pred Cch
Confidence 554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-17 Score=153.36 Aligned_cols=284 Identities=11% Similarity=-0.010 Sum_probs=233.9
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 181 (482)
+...+......+...| + +++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+ .+...|..+
T Consensus 21 ~~~~~~~~a~~~~~~g-~--~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC-D--FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 6677788888888887 8 999999999998874 44566777788888899999999999988753 367788888
Q ss_pred HHHHhcCCccccc-chHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHH
Q 011587 182 INGYCSQSKKAKD-CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTAL 260 (482)
Q Consensus 182 i~~~~~~~~~~~~-~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l 260 (482)
...+.. .| ++++|...|++.. ... +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 97 ~~~~~~-----~~~~~~~A~~~~~~a~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 165 (330)
T 3hym_B 97 GCYYLM-----VGHKNEHARRYLSKAT--TLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYI 165 (330)
T ss_dssp HHHHHH-----SCSCHHHHHHHHHHHH--TTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHH
T ss_pred HHHHHH-----hhhhHHHHHHHHHHHH--HhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHH
Confidence 888888 88 8999999999986 322 2356788899999999999999999999999887 5567778889
Q ss_pred HHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCG--------VKPNAVTFTSLFAA 329 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~ 329 (482)
...|...|++++|...|++..+ .+..++..+...+...|++++|...+++..+.. ......++..+..+
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 9999999999999999998875 367888999999999999999999999887631 13345688889999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH-HhcCCHh
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC-NVHGDVA 405 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~~~ 405 (482)
+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. .+.| +...+..+..++ ...|+.+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999983 3456788999999999999999999999998 6666 677777777777 4556543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=5.5e-18 Score=158.84 Aligned_cols=289 Identities=10% Similarity=-0.071 Sum_probs=225.9
Q ss_pred HHhCCChhHHHH-HhccCCC-----C--CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHH
Q 011587 154 YASNKDISSGKK-VFDQMPM-----R--SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLS 225 (482)
Q Consensus 154 ~~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~ 225 (482)
+...|++++|.+ .|++... | +...+..+...+.. .|++++|+..|+++. .. .+.+..++..+..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~al--~~-~p~~~~~~~~l~~ 106 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ-----EGDLPNAVLLFEAAV--QQ-DPKHMEAWQYLGT 106 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH-----TTCHHHHHHHHHHHH--HS-CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH-----CCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHH
Confidence 334578888888 7775542 1 35678888999999 999999999999997 32 2346778999999
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHH------------
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTA------------ 290 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~------------ 290 (482)
++...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+ | +...+..
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccH
Confidence 9999999999999999999987 66888999999999999999999999998874 2 2222211
Q ss_pred ---HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 291 ---MATGMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 291 ---li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.+..+...|++++|...|+++.+..... +..++..+...+.+.|++++|...++++.+. .+.+...+..+...+
T Consensus 184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATL 261 (368)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHH
Confidence 2333448899999999999998864321 5788999999999999999999999999983 345678999999999
Q ss_pred hccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccc---cccCCchhHHHHHHHHH
Q 011587 367 GRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV---DVACTSEDFVALSNIYA 441 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 441 (482)
...|++++|.+.|++. ...| +..++..+...|...|++++|...++++++..|+...+ .......+|..+..+|.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence 9999999999999987 3344 67889999999999999999999999999987721000 00012688999999999
Q ss_pred hCCCchHHHHHHHH
Q 011587 442 SAERWPDVESVRKQ 455 (482)
Q Consensus 442 ~~g~~~~a~~~~~~ 455 (482)
+.|++++|..++++
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988763
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=7.2e-18 Score=158.00 Aligned_cols=285 Identities=10% Similarity=-0.064 Sum_probs=222.1
Q ss_pred CChhHHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchH
Q 011587 158 KDISSGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLE 234 (482)
Q Consensus 158 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 234 (482)
+....+...+..... .+...|..+...+.+ .|++++|+..|+++. .. .+.+..++..+...+...|+++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~al--~~-~p~~~~~~~~lg~~~~~~g~~~ 116 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLK-----EGDLPVTILFMEAAI--LQ-DPGDAEAWQFLGITQAENENEQ 116 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHH-----HTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHH-----CCCHHHHHHHHHHHH--Hh-CcCCHHHHHHHHHHHHHCCCHH
Confidence 333444444444332 256678889999999 999999999999997 32 2346789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC-----------HHHHHHHHHHHHhcCCh
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN-----------VLTWTAMATGMAIHGKG 301 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~ 301 (482)
+|...++++.+.. +.+..++..+...|...|++++|...|+++.+ |+ ...+..+...+...|++
T Consensus 117 ~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 117 AAIVALQRCLELQ---PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHH
T ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhH
Confidence 9999999999987 67888999999999999999999999999875 21 22344567889999999
Q ss_pred HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 302 NEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
++|..+++++.+.... ++..++..+...+...|++++|...++++.+. .+.+..+|..+...|...|++++|.+.|+
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999886432 26788999999999999999999999999983 45578899999999999999999999999
Q ss_pred cC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccc----ccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 381 GI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD----VACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 381 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
+. ...| +..++..+..+|...|++++|...++++++..|+..... ...+...|..+..++...|+.+.+..+.+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88 4445 588899999999999999999999999999876321100 01147889999999999999999888765
Q ss_pred H
Q 011587 455 Q 455 (482)
Q Consensus 455 ~ 455 (482)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 4
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=7.4e-15 Score=144.63 Aligned_cols=215 Identities=9% Similarity=-0.016 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc-------CCChH-------HHHHHHHhccC---C-CHHHHHHHHHHH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSK-------CGCLD-------NALLIFSRMRE---K-NVLTWTAMATGM 295 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~ 295 (482)
..+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+
T Consensus 255 ~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 36778899998876 6788899999988876 79987 89999999874 4 578899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HhccCCH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPN--AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL-LGRAGHL 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 372 (482)
.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|..+|++..+. .+.+...|...... +...|+.
T Consensus 332 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCH
T ss_pred HhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCCh
Confidence 9999999999999999985 444 247888888888999999999999999873 22233333332222 3468999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE 450 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (482)
++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...+.- .......|...+....+.|+.+.+.
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~----~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP----PEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC----GGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999977 3334 67889999999999999999999999999987610 0012337878888888999999999
Q ss_pred HHHHHhHhc
Q 011587 451 SVRKQMKVK 459 (482)
Q Consensus 451 ~~~~~m~~~ 459 (482)
.+.+++.+.
T Consensus 484 ~~~~r~~~~ 492 (530)
T 2ooe_A 484 KVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.9e-17 Score=150.05 Aligned_cols=282 Identities=10% Similarity=0.007 Sum_probs=132.2
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHH
Q 011587 57 QSTKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIH 132 (482)
Q Consensus 57 ~~~~~a~~~~~~~~~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 132 (482)
|++++|.+.++.+..|+ .|..+..+ |++++|++.|.+. + |..+|..++.++...| . +++|...+
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~-D~~~y~~V~~~ae~~g-~--~EeAi~yl 84 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------D-DPSSYMEVVQAANTSG-N--WEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------C-CHHHHHHHHHHHHhCC-C--HHHHHHHH
Confidence 77888888888886664 67777776 8888888888542 3 7778888999888888 8 99999988
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC
Q 011587 133 VHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG 212 (482)
Q Consensus 133 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~ 212 (482)
+..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|.. .|++++|...|..+.
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a~----- 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYD-----EKMYDAAKLLYNNVS----- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C---------------------CTTTHHHHHHHTT-----
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHhh-----
Confidence 777764 45577888899999999999998888864 677799999999999 999999999999763
Q ss_pred CCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHH
Q 011587 213 VKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMA 292 (482)
Q Consensus 213 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 292 (482)
.|..+..++.+.|++++|.+.+.++ + ++.+|..++.+|...|+++.|......+. .++.-...++
T Consensus 150 ------n~~~LA~~L~~Lg~yq~AVea~~KA---~-----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv 214 (449)
T 1b89_A 150 ------NFGRLASTLVHLGEYQAAVDGARKA---N-----STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELI 214 (449)
T ss_dssp ------CHHHHHHHHHTTTCHHHHHHHHHHH---T-----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHH
T ss_pred ------hHHHHHHHHHHhccHHHHHHHHHHc---C-----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHH
Confidence 7888999999999999999988877 1 67888999999999999999987777655 3333344688
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc------CHHHHHHHHHHH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP------HIKHYSCIVDLL 366 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~ 366 (482)
..|.+.|++++|..+++...... +-....|+-+.-+|++- ++++..+-++...++.+++| +...|..++-.|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999887654 33556666666666553 33444444443334345555 466788888899
Q ss_pred hccCCHHHHHHHHHcC
Q 011587 367 GRAGHLEEAYNFIMGI 382 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~ 382 (482)
..-++++.|...+-+-
T Consensus 293 ~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 293 DKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HhhchHHHHHHHHHhC
Confidence 9999999887655443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=9.3e-17 Score=150.46 Aligned_cols=253 Identities=13% Similarity=-0.015 Sum_probs=205.1
Q ss_pred ccchHHHHH-HHHHhhhccC-CCCc--CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC
Q 011587 193 KDCAFNALV-LFRDMLVDVS-GVKP--TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268 (482)
Q Consensus 193 ~~~~~~a~~-~~~~m~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 268 (482)
.+++++|+. .|++.. .. .-.| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 38 ~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATYDKGY--QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHHHCCC--CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHH--hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCc
Confidence 678888988 888654 21 1112 35668889999999999999999999999887 678889999999999999
Q ss_pred ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHH
Q 011587 269 CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTS---------------LFAAC 330 (482)
Q Consensus 269 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------ll~~~ 330 (482)
++++|...|+++.+ .+..++..+..+|...|++++|...++++...... +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998864 47789999999999999999999999999886533 2222211 23334
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
...|++++|...++++.+...-.++..++..+...|...|++++|...+++. ...| +..++..+...+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4889999999999999985222225889999999999999999999999987 3344 6789999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..++++++..| .+..++..+..+|.+.|++++|...+++..+.
T Consensus 272 ~~~~~al~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQP--------GYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999998 78899999999999999999999999998753
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=3.9e-16 Score=140.75 Aligned_cols=271 Identities=9% Similarity=-0.042 Sum_probs=209.3
Q ss_pred HHHHhCCChhHHHHHhccCCCCC----chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 152 HFYASNKDISSGKKVFDQMPMRS----SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
+.....|++..|+..++.....+ ....-.+.++|.. .|+++.|+..++. .-.|+..++..+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~-----~g~~~~al~~~~~------~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA-----QRKYGVVLDEIKP------SSAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-----TTCHHHHHHHSCT------TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHH-----CCCHHHHHHHhcc------cCChhHHHHHHHHHHH
Confidence 44556788888888887765433 2344556788888 8888888865532 2356677888888888
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
...++.++|.+.++++...+.. |.+...+..+..++...|++++|++.+++ ..+..++..++..|.+.|++++|...
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~-P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVD-VTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCC-CSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8889999999999998877632 44667778888999999999999999998 56778899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C
Q 011587 308 LDSMRDCGVKPNAVTF---TSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P 383 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 383 (482)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. .
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998864 443211 22334445569999999999999984 5678889999999999999999999999987 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHH
Q 011587 384 IKP-DAILWRSLLSACNVHGDVAL-GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESV 452 (482)
Q Consensus 384 ~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (482)
..| +..++..++..+...|+.++ +.++++++.+..| .++.+ .+...+.+.++++..-
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P--------~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR--------SHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--------TCHHH----HHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------CChHH----HHHHHHHHHHHHHHHH
Confidence 445 77889999999999999876 6789999999998 45443 3344555555555443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=8.6e-15 Score=142.70 Aligned_cols=308 Identities=10% Similarity=-0.060 Sum_probs=136.3
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhh----ccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR----FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--- 156 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 156 (482)
+++++|++.|++..+.| +...+..+-..+.. .+ + +++|...|++..+.| +...+..|..+|..
T Consensus 93 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~-~--~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKV-D--KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC-C--HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC-C--HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 44555555555555443 33444444444443 22 3 555555555554443 23344444444444
Q ss_pred -CCChhHHHHHhccCCC-CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc----c
Q 011587 157 -NKDISSGKKVFDQMPM-RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ----L 230 (482)
Q Consensus 157 -~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~----~ 230 (482)
.+++++|.+.|+...+ .+...+..+...|.. |....++.++|+..|++.. ..+ +...+..+...+.. .
T Consensus 163 ~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g~g~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSR-GLGVERNDAISAQWYRKSA--TSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCCcCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCCCCC
Confidence 4455555555544332 233444444443332 1111344555555555443 222 23344444444433 4
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHhc-----CC
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAIH-----GK 300 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~ 300 (482)
+++++|...+++..+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+...|... ++
T Consensus 237 ~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCC
Confidence 45555555555544433 22233344444444 4455555555554443 2334444444444444 45
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHH
Q 011587 301 GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG---LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLE 373 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 373 (482)
+++|...|++..+.| +...+..+...|...| +.++|..+|++..+. .+...+..+...|.. .++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 555555555554443 2233333444443323 445555555555442 133444444444444 44555
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 374 EAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 374 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
+|.++|++.--..+...+..|...|.. .++.++|...|+++.+.++
T Consensus 385 ~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 385 QAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 555555444111234444444444444 4555555555555555443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=4.9e-17 Score=149.55 Aligned_cols=269 Identities=10% Similarity=-0.068 Sum_probs=218.2
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
+...+..+...+.. .|++++|+.+|+++. .. .+.+...+..+..++...|++++|...++++.+.. +.+
T Consensus 20 ~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLK-----LANLAEAALAFEAVC--QA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKD 88 (327)
T ss_dssp GSSCHHHHHHHHHH-----TTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred hhHHHHHHHHHHHH-----hccHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cCC
Confidence 44566777788888 999999999999986 32 23367788889999999999999999999999987 668
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCC
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAM--------------AT-GMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g 315 (482)
..++..+...|...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 88899999999999999999999998864 2 22223222 22 3778899999999999998864
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRS 393 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 393 (482)
. .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..
T Consensus 169 ~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 169 P-NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3 37788999999999999999999999999983 3456788999999999999999999999987 3334 6788999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccc----cCCchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDV----ACTSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
+...+...|++++|...++++.+..|+....+- ..+..++..+..++.+.|++++|..++++.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999998882100000 005788999999999999999999988654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=4.7e-17 Score=152.44 Aligned_cols=231 Identities=13% Similarity=0.003 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+...+..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|+..|+++.+ .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45568889999999999999999999999987 67899999999999999999999999999874 4678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPN-----------AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (482)
.+|...|++++|...|+++.+.. |+ ...+..+...+...|++++|..+++++.+...-.++...+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999998753 22 223344578889999999999999999985222226889999
Q ss_pred HHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
+...|...|++++|.+.|++. ...| +..+|..+..+|...|++++|...++++++..| .+..++..+..+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~ 290 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--------GFIRSRYNLGIS 290 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CchHHHHHHHHH
Confidence 999999999999999999988 3334 688999999999999999999999999999998 789999999999
Q ss_pred HHhCCCchHHHHHHHHhHhc
Q 011587 440 YASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~ 459 (482)
|.+.|++++|...+++..+.
T Consensus 291 ~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 291 CINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999998753
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=4.8e-15 Score=144.46 Aligned_cols=335 Identities=11% Similarity=-0.032 Sum_probs=238.3
Q ss_pred CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhh----ccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh---
Q 011587 84 TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCAR----FCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYAS--- 156 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 156 (482)
+++++|++.|+...+.| +...+..+-..|.. .+ + .++|.+.|++..+.| ++..+..|...|..
T Consensus 57 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~-~--~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 126 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQ-D--YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNG 126 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC-C--HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC-C--HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 67777888888877765 66677777777766 55 6 888888888888765 55667777778877
Q ss_pred -CCChhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc----c
Q 011587 157 -NKDISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ----L 230 (482)
Q Consensus 157 -~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~----~ 230 (482)
.+++++|...|+...+. +...+..+...|.. |....+++++|++.|++.. ..+ +...+..+...+.. .
T Consensus 127 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~a~--~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 127 VKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE-GDGVTRDYVMAREWYSKAA--EQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHhcCCCCC
Confidence 78888888888876543 56666666666654 1111567888888888876 443 56777777777776 7
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHh----cCCh
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAI----HGKG 301 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~ 301 (482)
++.++|.+.+++..+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+...|.. .+++
T Consensus 201 ~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG-----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCH
T ss_pred cCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCH
Confidence 88888888888888765 44566777777775 7788888888888765 456677777777777 7888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC---CHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA-----GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG---HLE 373 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 373 (482)
++|...|++..+.| +...+..+...|... ++.++|...|++..+. + +...+..+...|...| +.+
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHH
Confidence 88888888887765 445566666777665 7888888888888873 3 4456677777777655 678
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH--hCCCch
Q 011587 374 EAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA--SAERWP 447 (482)
Q Consensus 374 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~ 447 (482)
+|.++|++.--..+...+..+...|.. .+++++|...|+++.+.+. +........+-... -.++++
T Consensus 349 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--------SAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCCCCCHH
Confidence 888888877212467777778878877 7888888888888888766 44433333333222 255666
Q ss_pred HHHHHHH
Q 011587 448 DVESVRK 454 (482)
Q Consensus 448 ~a~~~~~ 454 (482)
+|...++
T Consensus 421 ~A~~~~~ 427 (490)
T 2xm6_A 421 QAWAWFD 427 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=169.99 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=130.6
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhcc-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMR-------EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTF 323 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 323 (482)
.....+|++||++||+.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3356789999999999999999999997764 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCC------HHHHHHH
Q 011587 324 TSLFAACCHAGL-VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPD------AILWRSL 394 (482)
Q Consensus 324 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~------~~~~~~l 394 (482)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++.+..+.+ .++.++++ +++|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHH
Confidence 999999999998 47899999999996 99999999999997766653 44444444 33332 4455556
Q ss_pred HHHHHhcC---------CHhHHHHHHHHHHh
Q 011587 395 LSACNVHG---------DVALGEKVGKILLQ 416 (482)
Q Consensus 395 ~~~~~~~g---------~~~~a~~~~~~~~~ 416 (482)
...|.+.+ ..++-...|++-+.
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql~ 309 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH 309 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHHHHHH
Confidence 66677655 24555666666543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=5.5e-16 Score=143.10 Aligned_cols=286 Identities=8% Similarity=-0.030 Sum_probs=133.9
Q ss_pred hhhHHHHHHHhccCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC---
Q 011587 7 HRCFALLKLKAITTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC--- 83 (482)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~--- 83 (482)
......+|..+ |++++|.+..+.+ +++.++..+..++... |++++|.+.|.+. +|...|..++.+
T Consensus 6 ~~a~~~ll~~~-~~ld~A~~fae~~------~~~~vWs~La~A~l~~---g~~~eAIdsfika--~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 6 TSAVQVLIEHI-GNLDRAYEFAERC------NEPAVWSQLAKAQLQK---GMVKEAIDSYIKA--DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-cCHHHHHHHHHhC------CChHHHHHHHHHHHHc---CCHHHHHHHHHcC--CCHHHHHHHHHHHHh
Confidence 34566788888 9999999999888 3345888999999999 9999999999765 566678777777
Q ss_pred -CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 84 -TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 84 -~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
|++++|+.+++..++. .+ ++.+.+.++.+|.+.| + ++++.++++ .|+..+|..+...|...|++++
T Consensus 74 ~g~~EeAi~yl~~ark~--~~-~~~i~~~Li~~Y~Klg-~--l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--AR-ESYVETELIFALAKTN-R--LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ---------------------------------------C--HHHHTTTTT-------CC----------------CTTT
T ss_pred CCCHHHHHHHHHHHHHh--Cc-cchhHHHHHHHHHHhC-C--HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999988777764 34 6788999999999999 8 999998885 4777899999999999999999
Q ss_pred HHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHH
Q 011587 163 GKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGY 242 (482)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 242 (482)
|..+|..+ ..|..++.++.+ .|++++|++.++++. ++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a-----~n~~~LA~~L~~-----Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 141 AKLLYNNV-----SNFGRLASTLVH-----LGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHT-----TTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHh-----hhHHHHHHHHHH-----hccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999987 489999999999 999999999999873 789999999999999999999654443
Q ss_pred HHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC
Q 011587 243 MEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRD-CGVKP 318 (482)
Q Consensus 243 ~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p 318 (482)
+ ...+.....++..|.+.|.+++|..+++.... .....|+-|.-+|++- ++++.++.++.... -+++|
T Consensus 203 -----L--~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 203 -----I--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp -----T--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred -----H--HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 2 22344455799999999999999999998874 3567888888887765 45555555443322 22333
Q ss_pred ------CHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 319 ------NAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 319 ------~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
+...|.-+...|.+.++++.|....
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4566788888888889999887753
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.6e-15 Score=147.25 Aligned_cols=349 Identities=9% Similarity=-0.079 Sum_probs=195.6
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhCCChhHHHHHhccCC-----
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR-----G---FMFNVLVATTLIHFYASNKDISSGKKVFDQMP----- 171 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 171 (482)
....|+.+-..+...| + .++|.+.|++.++. + .+....+|+.+..+|...|++++|...|++..
T Consensus 50 ~a~~yn~Lg~~~~~~G-~--~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-Q--NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp CCHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3456777777777766 6 88888777776542 1 12234567777778888888888777776542
Q ss_pred --CC----CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHH---hhccCchHHHHHHHH
Q 011587 172 --MR----SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSV---SSQLGLLEFGACVHG 241 (482)
Q Consensus 172 --~~----~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~ 241 (482)
.+ ...+++.+..++...+ .+++++|+..|++.. .+.|+ ...+..+..+ +...++.++|.+.++
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~---~~~y~~A~~~~~kal----~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCG---GNQNERAKVCFEKAL----EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHc---cccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11 2344554444444311 456778888887765 22343 3344333333 344566677777777
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
+.++.. +.+..++..+...+.. .|++++|.+++++..+ .+..++..+...|...|++++|...+++..+.
T Consensus 200 ~al~l~---p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 200 QAIRLN---PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHC---SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhcC---CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 777766 4555665555544443 3566777777776643 35567777777788888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHhc-------------------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 011587 315 GVKPNAVTFTSLFAACCH-------------------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 315 g~~p~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (482)
... +..++..+..+|.. .+..+.|...+++..+. .+.+...+..+...|...|++++|
T Consensus 277 ~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 277 IPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp STT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred CCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 322 44455555444432 12345666666666652 233445666777777888888888
Q ss_pred HHHHHcC-CCCCCHHH----HHHHHH-HHHhcCCHhHHHHHHHHHHhcCCCccc----------------ccccCCchhH
Q 011587 376 YNFIMGI-PIKPDAIL----WRSLLS-ACNVHGDVALGEKVGKILLQLQPEVTF----------------VDVACTSEDF 433 (482)
Q Consensus 376 ~~~~~~~-~~~p~~~~----~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 433 (482)
.+.|++. ...|+... +..+.. .....|++++|...|+++++..++-.. ..-+.+..+|
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 8877765 33343321 222222 234567777777777777665442100 0001578899
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhcCCccCCcccE
Q 011587 434 VALSNIYASAERWPDVESVRKQMKVKRVETEPGSSI 469 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 469 (482)
..+..+|...|++++|.+.+++..+.+-......+|
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999999998776544444444
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.8e-15 Score=136.34 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=199.1
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTD--TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL 270 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~ 270 (482)
.|++..|+..++... ...|+. .....+.+++...|+++.|...++. . . +++..++..+...+...|+.
T Consensus 12 ~g~y~~ai~~~~~~~----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~--~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 12 IGSYQQCINEAQRVK----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S--APELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp TTCHHHHHHHHHHSC----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S--CHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHhcc----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C--ChhHHHHHHHHHHHcCCCcH
Confidence 899999999998875 334543 3556678999999999999876644 2 2 55888899999999999999
Q ss_pred HHHHHHHHhccC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 271 DNALLIFSRMRE----K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 271 ~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998752 4 566777788999999999999999988 45788899999999999999999999999
Q ss_pred hHHhcCCCcCHHH---HHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 346 MKSKWGVEPHIKH---YSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 346 ~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++++++..|
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p- 231 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS- 231 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 9984 354321 122334455669999999999998 3345888999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHhCCCchH-HHHHHHHhHhcC
Q 011587 421 VTFVDVACTSEDFVALSNIYASAERWPD-VESVRKQMKVKR 460 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~ 460 (482)
.++.++..++..+...|+.++ +.++++++.+.+
T Consensus 232 -------~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 -------GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp -------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred -------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 799999999999999999976 578888877544
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=9.5e-16 Score=140.90 Aligned_cols=258 Identities=12% Similarity=-0.002 Sum_probs=183.6
Q ss_pred hhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCC---CCchhHHHHHH
Q 011587 107 FTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPM---RSSATWNAMIN 183 (482)
Q Consensus 107 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 183 (482)
..+......+...+ + +++|..+++++.+.. +.+..++..+...+...|++++|.+.|+++.+ .+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~-~--~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLA-N--LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-c--HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 44556666677777 7 888888888888764 44677788888888888998888888887652 36677888888
Q ss_pred HHhcCCcccccchHHHHHHHHHhhhccCCCCcC-HHHHHHH--------------HH-HhhccCchHHHHHHHHHHHHhC
Q 011587 184 GYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-DTTMVCV--------------LS-VSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
.+.. .|++++|+..++++. .. .|+ ...+..+ .. .+...|++++|...++++.+..
T Consensus 98 ~~~~-----~~~~~~A~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 98 SHTN-----EHNANAALASLRAWL--LS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHH-----TTCHHHHHHHHHHHH--HT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHH-----cCCHHHHHHHHHHHH--Hh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888 888889999888876 22 232 2222222 22 3667788888888888888776
Q ss_pred CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 011587 248 YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT 324 (482)
Q Consensus 248 ~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 324 (482)
+.+...+..+...|...|++++|...++++.+ .+..+|..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 169 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 244 (327)
T 3cv0_A 169 ---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMY 244 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 55777788888888888888888888877653 345677777777788888888888887776653 23566677
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCc-----------CHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 325 SLFAACCHAGLVEEGLHLFDNMKSKWGVEP-----------HIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 325 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.+...+...|++++|...++++.+. .-.. +...+..+..++.+.|+.++|..++++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777778888888777777663 1110 3556677777777777777777776654
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=165.53 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRD---CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (482)
..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+. |+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 46999999999999999999999988764 589999999999999999999999999999999995 99999999999
Q ss_pred HHHHHhccCCH-HHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccc-cccCCchhHHHH
Q 011587 362 IVDLLGRAGHL-EEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFV-DVACTSEDFVAL 436 (482)
Q Consensus 362 li~~~~~~g~~-~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 436 (482)
+|.++++.|+. ++|.++|++| |+.||..+|++++.++.+. .+++.+.+..|+..-+ .-.|...+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHH
Confidence 99999999985 7899999999 9999999999988654433 4444444545432110 001224455567
Q ss_pred HHHHHhCC
Q 011587 437 SNIYASAE 444 (482)
Q Consensus 437 ~~~~~~~g 444 (482)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777665
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.9e-13 Score=140.64 Aligned_cols=377 Identities=12% Similarity=0.033 Sum_probs=274.9
Q ss_pred CChhhHHHHHHHhccCcchHHHHHHHHHHhcCC--CCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-CCC-----hhh
Q 011587 5 PGHRCFALLKLKAITTPSHIKQIHAQLITNALK--SPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-PPN-----LFL 76 (482)
Q Consensus 5 p~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-~~~-----~~~ 76 (482)
-|+..|+.+|... . +.=+++.++-....++ .++.-....+..|... |.+.+|.++++... .|+ ...
T Consensus 951 ~d~~lW~~vl~~~-n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a---glp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 951 KDPELWGSVLLES-N--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred cCHHHHHHHhcCC-c--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC---CCHHHHHHHHHHHHcCCCcccccHHH
Confidence 4555666666443 2 2223444443333322 3344456778888888 99999999999877 333 234
Q ss_pred HHHHhcC---CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 011587 77 FNTLIRC---TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF 153 (482)
Q Consensus 77 ~~~ll~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (482)
-|.++.. -+..+..++.+..... + ..-+...+...+ . +++|..+|++.. ......+.++.
T Consensus 1025 qnlLi~tAIkaD~~Rv~eyI~kLd~~-----d---~~eIA~Iai~lg-l--yEEAf~IYkKa~-----~~~~A~~VLie- 1087 (1630)
T 1xi4_A 1025 QNLLILTAIKADRTRVMEYINRLDNY-----D---APDIANIAISNE-L--FEEAFAIFRKFD-----VNTSAVQVLIE- 1087 (1630)
T ss_pred HHHHHHHHHHhChhhHHHHHHHhhhc-----c---HHHHHHHHHhCC-C--HHHHHHHHHHcC-----CHHHHHHHHHH-
Confidence 4545444 5556666665555422 2 233556667777 7 999999999862 12222333433
Q ss_pred HHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch
Q 011587 154 YASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL 233 (482)
Q Consensus 154 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~ 233 (482)
..+++++|.++.++.. +..+|..+..++.. .|++++|++.|.+. -|...|..++.++.+.|++
T Consensus 1088 --~i~nldrAiE~Aervn--~p~vWsqLAKAql~-----~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQ-----KGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred --HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHh-----CCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCH
Confidence 6788999999998774 57788899999999 99999999999764 3778888899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
+++.+++....+..- +....+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|...
T Consensus 1151 EEAIeyL~mArk~~~----e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKAR----ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHhhcc----cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 999999998877653 2223345889999999988655443 4566777778899999999999999999984
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHH
Q 011587 314 CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRS 393 (482)
Q Consensus 314 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 393 (482)
..|..+..++.+.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLee 1285 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEE 1285 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHH
Confidence 478899999999999999999988773 457888889999999999999887764 4456666778
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC--CCchHHHHHHH
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA--ERWPDVESVRK 454 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 454 (482)
++..|.+.|.+++|..+++..+..++ .+...|.-|..+|++. ++..++.++|.
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~Ler--------aH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLER--------AHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCh--------hHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 89999999999999999999988887 6777887777777664 34555555554
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=2.7e-13 Score=139.57 Aligned_cols=383 Identities=8% Similarity=0.030 Sum_probs=282.5
Q ss_pred hhhHHHHHHHhc--cCcchHHHHHHHHHHhc--CCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChh-hHHHHh
Q 011587 7 HRCFALLKLKAI--TTPSHIKQIHAQLITNA--LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLF-LFNTLI 81 (482)
Q Consensus 7 ~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g--~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll 81 (482)
+.-...+.++.. |.+.++.++++.....+ +..+....++++....+. +.....+.......-+.. .-..++
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka----D~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA----DRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh----ChhhHHHHHHHhhhccHHHHHHHHH
Confidence 333444444444 88999999999988443 234456667766666554 445555555554433322 234444
Q ss_pred cCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 82 RCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 82 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
..|.+++|.++|++... .....+.++. ..+ + +++|.++.++. -++.+|..+..++.+.|+++
T Consensus 1061 ~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~-n--ldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV------NTSAVQVLIE---HIG-N--LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred hCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHh-h--HHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 44999999999999632 3333444543 444 6 99999998865 24778999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHH
Q 011587 162 SGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHG 241 (482)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 241 (482)
+|.+.|... .|...|.-++.++.+ .|++++|++.|...+ ... +++...+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA--dD~say~eVa~~~~~-----lGkyEEAIeyL~mAr--k~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA--DDPSSYMEVVQAANT-----SGNWEELVKYLQMAR--KKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--hhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999764 688888999999999 999999999999876 333 44333445899999999988655443
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 011587 242 YMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAV 321 (482)
Q Consensus 242 ~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 321 (482)
+ .++...+..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. -+..
T Consensus 1191 ---~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1191 ---N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 1 335567778999999999999999999985 58999999999999999999999987 2568
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
+|..+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+++++.. ++.| ....|+-+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 99999999999999999988765432 35678889999999999999999999776 5555 4456666666666
Q ss_pred hc--CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHH
Q 011587 400 VH--GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 400 ~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (482)
+. ++..++.+.|..-....+ -....-+...|.-++..|.+.|+++.|..
T Consensus 1326 Ky~peklmEhlk~f~~rini~k---~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVNIPK---VLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcccch---HhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 53 455556666653332211 00011256789999999999999999984
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.3e-13 Score=133.98 Aligned_cols=179 Identities=10% Similarity=0.038 Sum_probs=144.5
Q ss_pred HHHHHHHHhccC---CCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 271 DNALLIFSRMRE---KNVLTWTAMATGMAI-------HGKGN-------EAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 271 ~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
+.|..+|++... .+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 377788888874 367788888888775 79987 8999999998632233577888899999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCcC-H-HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH-HHhcCCHhHHH
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPH-I-KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSA-CNVHGDVALGE 408 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a~ 408 (482)
|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.++|.++|++. ...|+ ...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999983 443 2 58899999999999999999999988 44443 3333322222 34689999999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+|+++++..| .+...+..++..+.+.|+.++|..+|++....+
T Consensus 412 ~~~e~al~~~p--------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 412 KIFELGLKKYG--------DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCC--------CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999999988 688999999999999999999999999998764
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.9e-14 Score=138.30 Aligned_cols=360 Identities=7% Similarity=-0.084 Sum_probs=231.5
Q ss_pred CCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC-----------CCC-hhhHHHHhcC----CCCccHHHHHHHHHHC
Q 011587 36 LKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD-----------PPN-LFLFNTLIRC----TPPQDSVLVFAYWVSK 99 (482)
Q Consensus 36 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~-----------~~~-~~~~~~ll~~----~~~~~a~~~~~~m~~~ 99 (482)
.......++.+..++... |++++|++.|+.-. .|+ ..+|+.+-.. |++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~---G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp ---CCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 344567789999999998 99999999887532 222 3455544333 9999999999988652
Q ss_pred C------CCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCChhHHHHHhccC
Q 011587 100 G------LLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHF---YASNKDISSGKKVFDQM 170 (482)
Q Consensus 100 ~------~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~ 170 (482)
. ..+....++...-.++...+ .+++++|.+.|++.++.. +-++..+..+..+ +...++.++|++.|++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTRLKCG-GNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 11213456666666666666 555999999999999874 3345555555544 44567888888888765
Q ss_pred C---CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC
Q 011587 171 P---MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 171 ~---~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
. ..+..++..+...+...+.. .+++++|.+.+++.. . ..+.+...+..+...+...|++++|...++++.+..
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~-~~~~~~a~~~~~~al--~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREE-GEEEGEGEKLVEEAL--E-KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC-------CHHHHHHHHHH--H-HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhcCCcchHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH--H-hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC
Confidence 4 23555666665555443222 577889999999875 2 223466788899999999999999999999999887
Q ss_pred CCCCCchhHHHHHHHHHHcC-------------------CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHH
Q 011587 248 YMPENDVFIGTALVDMYSKC-------------------GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 248 ~~p~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
|.+..++..+...|... +.++.|...|++..+ .+..++..+...|...|++++|+
T Consensus 278 ---p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 278 ---PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 66777787777766432 234567777766653 35567888899999999999999
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 306 RLLDSMRDCGVKPNAV--TFTSLFA-ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
..|++..+....|... .+..+.. .....|+.++|...|.+..+- .|+.......+ ..+.++++..
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~ 422 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHH
Confidence 9999988765443321 2222222 234678999999999988872 44433222222 2233333333
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 -PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 -~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.. +.+..+|..+...|...|++++|.+.|+++++.++
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 22 33677899999999999999999999999999888
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.4e-14 Score=125.59 Aligned_cols=221 Identities=7% Similarity=-0.070 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C-------HH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N-------VL 286 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~ 286 (482)
...+..+...+...|++++|...++++.+.. + +...+..+...|...|++++|...+++..+ | + ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--K--DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4577888899999999999999999999887 3 678889999999999999999999998874 2 1 57
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
+|..+...|...|++++|...|++..+. .|+. ..+.+.|++++|...++++.. ..+.+...+..+...+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHH
Confidence 8899999999999999999999999885 3443 345667899999999999988 3445677888999999
Q ss_pred hccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 367 GRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
...|++++|.+.+++. ... .+..++..+...+...|++++|...++++++..| .+...+..+..++.+.|
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------NFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH--------HHHHHHHHHHHHHHHHh
Confidence 9999999999999988 333 3688899999999999999999999999999998 78899999999999999
Q ss_pred CchHHHHHHHHhHhcC
Q 011587 445 RWPDVESVRKQMKVKR 460 (482)
Q Consensus 445 ~~~~a~~~~~~m~~~~ 460 (482)
++++|...+++..+..
T Consensus 222 ~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 EYASALETLDAARTKD 237 (258)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999887543
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2.2e-14 Score=123.49 Aligned_cols=196 Identities=12% Similarity=-0.012 Sum_probs=146.4
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
|++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..|++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 34666777777788888888888888887754 3566777778888888888888888888777642 2566777777
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHH
Q 011587 328 AACCHA-----------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLL 395 (482)
Q Consensus 328 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 395 (482)
.++... |++++|...+++..+. -+-+...+..+...|...|++++|+..|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999999883 3446778888999999999999999999887 1116788889999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.++...|++++|...++++++..| .+...+..+..++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP--------KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999 788999999999999999999999888754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-14 Score=128.56 Aligned_cols=225 Identities=9% Similarity=-0.045 Sum_probs=190.0
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc-
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND- 253 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 253 (482)
...|..+...+.. .|++++|+..|++.. ... .+...+..+..++...|++++|...++++.+......++
T Consensus 5 a~~~~~~g~~~~~-----~~~~~~A~~~~~~a~--~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYK-----ARQFDEAIEHYNKAW--ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHH-----hccHHHHHHHHHHHH--Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 3467778888888 999999999999987 544 778899999999999999999999999998865200111
Q ss_pred ---hhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 254 ---VFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 254 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
..++..+...|...|++++|...|++..+ ++. ..+...|++++|...++++.... +.+...+..+..
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 147 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHH
Confidence 67889999999999999999999999875 442 34667788999999999998863 225667888889
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhH
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 406 (482)
.+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999983 3556888999999999999999999999988 3334 68889999999999999999
Q ss_pred HHHHHHHHHhcC
Q 011587 407 GEKVGKILLQLQ 418 (482)
Q Consensus 407 a~~~~~~~~~~~ 418 (482)
|...++++.+..
T Consensus 226 A~~~~~~a~~~~ 237 (258)
T 3uq3_A 226 ALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999999988
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=3.6e-14 Score=126.87 Aligned_cols=240 Identities=10% Similarity=-0.062 Sum_probs=194.0
Q ss_pred ccchHHHHHHHHHhhhccCCC--Cc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 193 KDCAFNALVLFRDMLVDVSGV--KP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.+++++|+..|+++. .... .| +..++..+...+...|++++|...++++.+.. +.+..++..+...|...|+
T Consensus 18 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHH--hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccC
Confidence 789999999999997 4321 22 46688899999999999999999999999987 6688999999999999999
Q ss_pred hHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 270 LDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 270 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
+++|...|++..+ .+..++..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...+++.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999874 36789999999999999999999999999885 344444445555667779999999999888
Q ss_pred HHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 347 KSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 347 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
... .+++...+. ++..+...++.++|.+.+++. ...|. ..++..+...+...|++++|...++++++..|
T Consensus 171 ~~~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 246 (275)
T 1xnf_A 171 FEK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV- 246 (275)
T ss_dssp HHH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred Hhc--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-
Confidence 874 344444444 677788888999999999877 33332 57788899999999999999999999999887
Q ss_pred cccccccCCchhHHHHHHHHHhCCCchHHHHHH
Q 011587 421 VTFVDVACTSEDFVALSNIYASAERWPDVESVR 453 (482)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (482)
.+...+ ..++...|++++|.+.+
T Consensus 247 -------~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 -------HNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -------TTCHHH---HHHHHHHHHHHHC----
T ss_pred -------hhHHHH---HHHHHHHHHHHhhHHHH
Confidence 454443 55677788888887765
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=3.2e-13 Score=119.03 Aligned_cols=198 Identities=13% Similarity=-0.034 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMAT 293 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 293 (482)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+ .+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHH
Confidence 5678888899999999999999999999887 66788999999999999999999999998864 46788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 294 GMAIHGKGNEAIRLLDSMRDCGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 294 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.|...|++++|..+++++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998843444 4567888889999999999999999999984 345678899999999999999
Q ss_pred HHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 373 EEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 373 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++|.+.+++. ... .+...+..+...+...|+.++|.+.++++.+..|
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999987 334 4677888888999999999999999999999988
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=6.7e-14 Score=122.58 Aligned_cols=212 Identities=13% Similarity=0.051 Sum_probs=164.4
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTA 290 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 290 (482)
......+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+ .+..++..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 96 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96 (243)
T ss_dssp ----------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH
Confidence 3455677888888999999999999999999876 66788999999999999999999999998864 46788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcC
Confidence 9999999999999999999998864 346778888999999999999999999999883 3456788999999999999
Q ss_pred CHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 371 HLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
++++|.+.+++. ... .+..++..+...+...|++++|...++++.+..| .+...+..+...
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~~~l 236 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP--------DHMLALHAKKLL 236 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT--------TCHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc--------chHHHHHHHHHH
Confidence 999999999987 323 4678899999999999999999999999999998 566666555443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=2.2e-13 Score=121.62 Aligned_cols=247 Identities=9% Similarity=-0.062 Sum_probs=176.8
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchh
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF 255 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 255 (482)
.+......+.. .|++++|+..|++.. .. .| +...+..+..++...|++++|...++++.+.+..|.....
T Consensus 5 ~~~~~a~~~~~-----~~~~~~A~~~~~~~l--~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 5 VEFRYADFLFK-----NNNYAEAIEVFNKLE--AK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp CHHHHHHHHHT-----TTCHHHHHHHHHHHH--HT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHHHH-----hcCHHHHHHHHHHHH--Hh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 34455566777 888888888888876 22 23 4447777888888888888888888888874432222334
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
.+..+...|...|++++|+..|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+...+..
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 578888888888899988888888764 356788888888888999999999988887763 2355666666623344
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC---HHHHHHHHHcC----CCCCC------HHHHHHHHHHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH---LEEAYNFIMGI----PIKPD------AILWRSLLSACN 399 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~ 399 (482)
.+++++|...|+++.+. .+.+...+..+...+...|+ .++|...+++. .-.|+ ..+|..+...|.
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 46899999999988873 34446777777888877777 66677666655 11233 256777888899
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
..|++++|...++++++..| .+......+.......
T Consensus 233 ~~~~~~~A~~~~~~al~~~p--------~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDP--------TNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHhcCc--------cHHHHHHHhhhhhccc
Confidence 99999999999999999999 6777666665554433
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=8.3e-13 Score=113.95 Aligned_cols=199 Identities=9% Similarity=-0.062 Sum_probs=173.1
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678888999999999999999999999987 66788999999999999999999999998864 4677899999
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 293 TGMAIH-GKGNEAIRLLDSMRDCGVKPN-AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 293 ~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 999999 999999999999988433343 567888889999999999999999999883 3446788999999999999
Q ss_pred CHHHHHHHHHcC-CC-C-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 371 HLEEAYNFIMGI-PI-K-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++++|.+.+++. .. + .+...+..+...+...|+.+.|..+++.+.+..|
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999987 22 3 4677788888888999999999999999998887
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=2.8e-13 Score=116.49 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=87.9
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND 253 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 253 (482)
...+..+...+.. .|++++|+..|++.. ...| +...+..+..++.+.|++++|...++++.+.. |.+
T Consensus 5 ~~~~~~lg~~~~~-----~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYA-----LGRYDAALTLFERAL----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRY 72 (217)
T ss_dssp CHHHHHHHHHHHH-----TTCHHHHHHHHHHHH----TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc
Confidence 3444445555555 555555555555543 1222 34455555555555555555555555555554 444
Q ss_pred hhHHHHHHHHHHcC-----------CChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 011587 254 VFIGTALVDMYSKC-----------GCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN 319 (482)
Q Consensus 254 ~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 319 (482)
...+..+..++... |++++|+..|++..+ | +...|..+..++...|++++|+..|++..+.. .+
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 55555555555555 555555555554432 2 33444444445555555555555555544443 34
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
...+..+..++...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444555555555555555555555442 222344444444455555555555444443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.6e-13 Score=120.15 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=157.4
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
......+..+...+...|++++|..+|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 44567788889999999999999999999864 367889999999999999999999999998864 33678888899
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHh
Q 011587 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 328 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 405 (482)
..+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999984 3557788999999999999999999999987 333 47888999999999999999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+|...++++.+..+ .+..++..+..+|.+.|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDP--------GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999998 788899999999999999999999999988654
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=4.9e-13 Score=119.31 Aligned_cols=237 Identities=10% Similarity=-0.021 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC----HHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN----VLTWTA 290 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~ 290 (482)
...+......+...|++++|...++++.+.. +.+...+..+...|...|++++|+..+++..+ ++ ..+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3455667788899999999999999999887 56777889999999999999999999998875 22 235889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH-HHHhcc
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV-DLLGRA 369 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~ 369 (482)
+...+...|++++|...|++..+... .+...+..+...|...|++++|...+++..+ -.+.+...+..+. ..|. .
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~-~ 155 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYY-N 155 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHH-H
Confidence 99999999999999999999988643 3667889999999999999999999999988 3455677777777 5554 4
Q ss_pred CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 370 GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 370 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
+++++|.+.|++. ...| +...+..+...+...|+ +++|...++++.+...+....+......+|..+...|.+.|
T Consensus 156 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 5999999999988 4445 57778888888888888 88899999999887531100000001257888999999999
Q ss_pred CchHHHHHHHHhHhcC
Q 011587 445 RWPDVESVRKQMKVKR 460 (482)
Q Consensus 445 ~~~~a~~~~~~m~~~~ 460 (482)
++++|...+++..+..
T Consensus 236 ~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 236 DKVKADAAWKNILALD 251 (272)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=6.3e-13 Score=117.13 Aligned_cols=197 Identities=10% Similarity=-0.053 Sum_probs=173.6
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
...+..+...+...|++++|...|+++.+ .+..++..+...|...|++++|...++++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 67788899999999999999999998864 4678899999999999999999999999988643 3678888899999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
...|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999987 23444 5678888999999999999999999987 3334 688899999999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
...++++.+..+ .+...+..+...+.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGG--------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCc--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999888 788899999999999999999999999998654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=4.6e-12 Score=113.14 Aligned_cols=224 Identities=9% Similarity=-0.093 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTA 290 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 290 (482)
+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+ .+..++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56678888889999999999999999998844 45677888999999 9999999999998875 47788888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 291 MATGMAI----HGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 291 li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 9999999 999999999999998875 67788888888888 99999999999999984 4 56677888
Q ss_pred HHHHhc----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 363 VDLLGR----AGHLEEAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 363 i~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
...|.. .+++++|.+.|++.--..+...+..+...|.. .+++++|...++++.+.++ ...+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------~~a~~ 222 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN----------GGGCF 222 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC----------HHHHH
Confidence 888887 89999999999887112356778888888988 9999999999999998765 46778
Q ss_pred HHHHHHHh----CCCchHHHHHHHHhHhcCC
Q 011587 435 ALSNIYAS----AERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 435 ~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 461 (482)
.+...|.+ .+++++|...+++..+.+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88999998 9999999999999877653
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=4.6e-13 Score=124.78 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=205.9
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCc-hHHHHHHHHHHHHhCCCCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGL-LEFGACVHGYMEKTFYMPE 251 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~ 251 (482)
+...|+.+...+.. .|++++|+..|++.. .+.| +...|..+..++...|+ +++|...++++++.. +
T Consensus 96 ~~~a~~~lg~~~~~-----~g~~~~Al~~~~~al----~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQR-----DERSERAFKLTRDAI----ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---P 163 (382)
T ss_dssp HHHHHHHHHHHHHH-----TCCCHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---T
T ss_pred hHHHHHHHHHHHHH-----CCChHHHHHHHHHHH----HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---C
Confidence 34578888888888 999999999999987 3445 57788999999999997 999999999999998 7
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
.+...|..+..++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.... +...|+.+..
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~ 242 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYF 242 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 7899999999999999999999999999974 47789999999999999999999999999987543 7788888999
Q ss_pred HHhc-cCcHHHH-----HHHHHHhHHhcCCCcCHHHHHHHHHHHhccC--CHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 011587 329 ACCH-AGLVEEG-----LHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG--HLEEAYNFIMGIPIKP-DAILWRSLLSACN 399 (482)
Q Consensus 329 ~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 399 (482)
++.+ .|..++| ...+++..+. -+-+...|..+...+...| +.++|++.+.++...| +...+..+...|.
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 8888 5665777 5888888873 3446778888999999888 6899999888774445 6778888888888
Q ss_pred hcC---------CHhHHHHHHHHH-HhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 400 VHG---------DVALGEKVGKIL-LQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 400 ~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
+.| .+++|.++++++ .+.+| .....|..+...+..
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP--------~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEKDT--------IRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTTCG--------GGHHHHHHHHHHHHH
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHH
Confidence 864 258999999999 88888 666777777666553
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2.5e-13 Score=126.61 Aligned_cols=225 Identities=10% Similarity=0.026 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC-hHHHHHHHHhccC---CCHHHHHHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC-LDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
...|..+...+...|++++|...++++++.. +.+..+|+.+..++...|+ +++|+..|+++.+ .+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4577888888999999999999999999998 7789999999999999997 9999999999974 4778999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc-cCC
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR-AGH 371 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 371 (482)
.++...|++++|+..|+++.+.... +...|..+..++.+.|++++|+..++++.+. -+-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999987543 7888999999999999999999999999984 34578899999999998 666
Q ss_pred HHHH-----HHHHHcC-CCCC-CHHHHHHHHHHHHhcC--CHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 372 LEEA-----YNFIMGI-PIKP-DAILWRSLLSACNVHG--DVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 372 ~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
.++| ++.+++. .+.| +...|+.+...+...| ++++|.+.+.++ +..+ .+...+..++.+|.+
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p--------~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH--------SSPYLIAFLVDIYED 321 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC--------CCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC--------CCHHHHHHHHHHHHH
Confidence 5777 4777766 4455 6788998888888888 689999999988 7776 678899999999998
Q ss_pred CC---------CchHHHHHHHHh
Q 011587 443 AE---------RWPDVESVRKQM 456 (482)
Q Consensus 443 ~g---------~~~~a~~~~~~m 456 (482)
.| .+++|..+++++
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHH
Confidence 74 358999999998
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=6.2e-13 Score=127.71 Aligned_cols=376 Identities=8% Similarity=-0.048 Sum_probs=246.6
Q ss_pred HHHHHhcCCCCCChHHHHHHhhcCCCC-ChhhHHHH----hcCCCC---ccHHHHHHHHHHCCCCCCChhhHHHHHHHhh
Q 011587 46 IQLYCTKKASPQSTKIVHFVFTHFDPP-NLFLFNTL----IRCTPP---QDSVLVFAYWVSKGLLTFDDFTYVFALGSCA 117 (482)
Q Consensus 46 l~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l----l~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~ 117 (482)
+...+.+. |++++|.++|+....+ +...+..+ ...|+. ++|++.|+...+. .| ..+..+-..+.
T Consensus 9 la~~~~~~---g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~---~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKR---GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SP---RAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHTCCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CH---HHHHHHHHHHH
Confidence 45556666 9999999999876522 12121111 111666 8999999999864 33 44444444333
Q ss_pred hccC--cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHH---HHhccCC-CCCchhHHHHHHHHhcCCcc
Q 011587 118 RFCS--LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGK---KVFDQMP-MRSSATWNAMINGYCSQSKK 191 (482)
Q Consensus 118 ~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~li~~~~~~~~~ 191 (482)
..+. .++.++|...|++..+.|.. ..+..|...|...+..+.+. +.+.... ..+...+..+...|...+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 3320 12489999999999987732 36777888888777655543 3333332 23677777888888772222
Q ss_pred cccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC---chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC-
Q 011587 192 AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG---LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC- 267 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~- 267 (482)
....+.+..+++... ...|+ .+..+...+...| +.++|...|++..+.| +.+...+..+...|...
T Consensus 158 -~~~~~~a~~~~~~a~----~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 158 -DQHLDDVERICKAAL----NTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp -GGGHHHHHHHHHHHT----TTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGG
T ss_pred -ccCHHHHHHHHHHHH----cCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCC
Confidence 235555666666553 22333 7888888888899 9999999999999998 56677667788888665
Q ss_pred ---CChHHHHHHHHhccCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----cH
Q 011587 268 ---GCLDNALLIFSRMREKNVLTWTAMATG-M--AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-----LV 336 (482)
Q Consensus 268 ---g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-----~~ 336 (482)
+++++|..+|++....+...+..+... | ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 228 ~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 799999999999884466778888777 4 56899999999999999887 5666777777776 45 99
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGE 408 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 408 (482)
++|...|++.. . | +...+..|...|.. ..+.++|..+|++.--.-+......|...|.. .++.++|.
T Consensus 304 ~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 304 KAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999887 3 3 56677777777766 44899999999987222344555666666664 56899999
Q ss_pred HHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 409 KVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+|+.+.+.|. ++.......+......++.++|..+.++-.+.
T Consensus 379 ~~~~~A~~~g~--------~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 379 VFSQLAKAQDT--------PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHTTCC--------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999888 55444444444444455677888887776543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=2.2e-12 Score=111.32 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=173.0
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
+.+...+..+...+...|++++|...|+++.+ .+..++..+...|...|++++|...++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45677889999999999999999999998864 467789999999999999999999999998864 33677888999
Q ss_pred HHHhcc-CcHHHHHHHHHHhHHhcCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCC
Q 011587 328 AACCHA-GLVEEGLHLFDNMKSKWGVEPH-IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGD 403 (482)
Q Consensus 328 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 403 (482)
..+... |++++|...++++.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999988 233443 678888999999999999999999987 3334 58889999999999999
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+++|...++++.+..|+ .+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEV-------LQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCS-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999998761 466778888888999999999999999987543
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=2.7e-13 Score=121.10 Aligned_cols=239 Identities=10% Similarity=-0.117 Sum_probs=165.7
Q ss_pred CCCccHHHHHHHHHHCCC--CCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 84 TPPQDSVLVFAYWVSKGL--LTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 84 ~~~~~a~~~~~~m~~~~~--~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
|++++|++.|+.+.+... .|.+..++..+...+...| + +++|...++++++.. +.+..++..+..+|...|+++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-L--RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-c--HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 677888888888887532 1224566777777777777 7 888888888888874 446778888888888888888
Q ss_pred HHHHHhccCCC---CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHH
Q 011587 162 SGKKVFDQMPM---RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGAC 238 (482)
Q Consensus 162 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 238 (482)
+|.+.|++..+ .+..+|..+...+.. .|++++|...|+++. . ..|+.......+..+...|++++|..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~--~--~~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYY-----GGRDKLAQDDLLAFY--Q--DDPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHH-----hccHHHHHHHHHHHH--H--hCCCChHHHHHHHHHHHhcCHHHHHH
Confidence 88888887652 357778888888888 888888888888876 2 33444444444555566688888888
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-------VLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
.+....... +.+...+. ++..+...++.++|...+++..+.+ ..+|..+...|...|++++|...|++.
T Consensus 166 ~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 166 VLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcC---CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887777765 33444443 6667777777888888888776532 456777777788888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 312 RDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 312 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.+.. |+. +.....++...|++++|.+.+
T Consensus 242 l~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 7653 322 222234555666666666554
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=3.3e-13 Score=128.26 Aligned_cols=270 Identities=10% Similarity=-0.028 Sum_probs=201.5
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-H----HHHHHHHHHhhccCchHHHHHHHHHHHHhCC---C
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-D----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---M 249 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~ 249 (482)
+..+...+.. .|++++|+..|++.. .. .|+ . ..+..+...+...|++++|...++++.+... .
T Consensus 51 l~~~g~~~~~-----~g~~~~A~~~~~~al--~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 51 LALEGERLCN-----AGDCRAGVAFFQAAI--QA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHH--HH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-----hCcHHHHHHHHHHHH--Hh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 3445566777 888889999888887 32 232 2 4677888888999999999999988876510 0
Q ss_pred CCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---------CHHHHHHHHHHHHhcCC-----------------hHH
Q 011587 250 PENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---------NVLTWTAMATGMAIHGK-----------------GNE 303 (482)
Q Consensus 250 p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~ 303 (482)
++.....+..+...|...|++++|...|++..+- ...++..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 0335667888899999999999999999887631 34578888889999999 999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHH
Q 011587 304 AIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 304 a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 374 (482)
|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99988876542 1111 2347778888899999999999999998763111112 2377888999999999999
Q ss_pred HHHHHHcC-CCC---C----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 375 AYNFIMGI-PIK---P----DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 375 A~~~~~~~-~~~---p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
|.+.+++. ... . ...++..+...+...|++++|...++++++..++... ......++..+..+|.+.|++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHHHHHHHhccH
Confidence 99998876 111 1 2567788888999999999999999999886542100 002245788899999999999
Q ss_pred hHHHHHHHHhHh
Q 011587 447 PDVESVRKQMKV 458 (482)
Q Consensus 447 ~~a~~~~~~m~~ 458 (482)
++|...+++..+
T Consensus 360 ~~A~~~~~~al~ 371 (411)
T 4a1s_A 360 ERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=1.1e-11 Score=110.60 Aligned_cols=223 Identities=10% Similarity=-0.080 Sum_probs=192.2
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhCCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQ----LGLLEFGACVHGYMEKTFYM 249 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 249 (482)
+..++..+...+.. .+++++|+..|++.. . +.+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~-----~~~~~~A~~~~~~a~--~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYK-----EKDFTQAKKYFEKAC--D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHh-----CCCHHHHHHHHHHHH--H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--
Confidence 55677778888888 899999999999987 4 3356778888889998 999999999999999876
Q ss_pred CCCchhHHHHHHHHHHc----CCChHHHHHHHHhccC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCH
Q 011587 250 PENDVFIGTALVDMYSK----CGCLDNALLIFSRMRE-KNVLTWTAMATGMAI----HGKGNEAIRLLDSMRDCGVKPNA 320 (482)
Q Consensus 250 p~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 320 (482)
+...+..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|...|++..+.+ +.
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 56778889999999 9999999999998875 477888999999999 999999999999999876 56
Q ss_pred HHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC-CCCCCHHHH
Q 011587 321 VTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI-PIKPDAILW 391 (482)
Q Consensus 321 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~ 391 (482)
..+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++. ... +...+
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~ 221 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGC 221 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHH
Confidence 677778888887 89999999999999984 3 46778888999999 99999999999987 323 36778
Q ss_pred HHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 392 RSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 392 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
..+...|.. .+++++|...++++.+.++
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888988 9999999999999999998
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=7.3e-13 Score=125.48 Aligned_cols=272 Identities=11% Similarity=0.016 Sum_probs=188.6
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCc-C----HHHHHHHHHHhhccCchHHHHHHHHHHHHhCC-
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKP-T----DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY- 248 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 248 (482)
...+......+.. .|++++|+..|++.. .. .| + ...+..+...+...|+++.|...++++.....
T Consensus 9 ~~~l~~~g~~~~~-----~g~~~~A~~~~~~al--~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 9 CLELALEGERLCK-----SGDCRAGVSFFEAAV--QV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--HH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hccHHHHHHHHHHHH--hc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3344555666667 788888888888776 32 22 2 34677777888888888888888887655311
Q ss_pred --CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CC----HHHHHHHHHHHHhcCC-----------------
Q 011587 249 --MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KN----VLTWTAMATGMAIHGK----------------- 300 (482)
Q Consensus 249 --~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~----------------- 300 (482)
.++....++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 0122355677788888888888888888887763 12 3477778888888888
Q ss_pred ---hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhc
Q 011587 301 ---GNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGR 368 (482)
Q Consensus 301 ---~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~ 368 (482)
+++|...+++.... +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 88888888776432 2111 2346777778888889999999888887763111122 3377788888889
Q ss_pred cCCHHHHHHHHHcC-CC---CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 369 AGHLEEAYNFIMGI-PI---KPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 369 ~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
.|++++|...+++. .+ .++ ..++..+...+...|++++|...++++.+..++.+. ......++..+..+|
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSLGNAY 317 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHH
Confidence 99999998888766 11 111 457778888888999999999999988876542100 001255777888899
Q ss_pred HhCCCchHHHHHHHHhH
Q 011587 441 ASAERWPDVESVRKQMK 457 (482)
Q Consensus 441 ~~~g~~~~a~~~~~~m~ 457 (482)
.+.|++++|...+++..
T Consensus 318 ~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 99999999998888765
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=7e-13 Score=121.90 Aligned_cols=270 Identities=12% Similarity=0.013 Sum_probs=204.5
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcC-----HHHHHHHHHHhhccCchHHHHHHHHHHHHh----CC
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPT-----DTTMVCVLSVSSQLGLLEFGACVHGYMEKT----FY 248 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 248 (482)
+......+.. .|++++|+..|++.. .. .|+ ...+..+...+...|++++|...++++.+. +.
T Consensus 8 l~~~g~~~~~-----~g~~~~A~~~~~~al--~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 8 LALEGERLCK-----SGDCRAGVSFFEAAV--QV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHH--HH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-----hccHHHHHHHHHHHH--hh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 3344556677 899999999999987 32 232 357788889999999999999999987654 21
Q ss_pred CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CC----HHHHHHHHHHHHhcCC-------------------
Q 011587 249 MPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KN----VLTWTAMATGMAIHGK------------------- 300 (482)
Q Consensus 249 ~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~------------------- 300 (482)
++....++..+...|...|++++|...+++..+ ++ ..++..+...|...|+
T Consensus 79 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 79 -QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 123466788899999999999999999988763 22 3478888899999999
Q ss_pred -hHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccC
Q 011587 301 -GNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAG 370 (482)
Q Consensus 301 -~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g 370 (482)
+++|...+++.... +..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999999876542 1111 2346778888899999999999999998763111111 347888889999999
Q ss_pred CHHHHHHHHHcC-CC---CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 371 HLEEAYNFIMGI-PI---KPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 371 ~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
++++|.+.+++. .+ .++ ..++..+...+...|++++|...++++.+..++.+. ......++..+...|.+
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~ 315 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTA 315 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHH
Confidence 999999998876 11 112 557788888999999999999999999886542100 00124577889999999
Q ss_pred CCCchHHHHHHHHhHhc
Q 011587 443 AERWPDVESVRKQMKVK 459 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~ 459 (482)
.|++++|...+++..+.
T Consensus 316 ~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 316 LGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHC
T ss_pred cCChHHHHHHHHHHHHH
Confidence 99999999999988754
No 59
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=4.4e-12 Score=121.76 Aligned_cols=342 Identities=10% Similarity=-0.036 Sum_probs=216.0
Q ss_pred hcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchh---hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 011587 81 IRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTL---WLGRQIHVHVTKRGFMFNVLVATTLIHFYASN 157 (482)
Q Consensus 81 l~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 157 (482)
+..|++++|++.|+...+.| +...+..+-..+...| + . ++|...|++..+. ++..+..|...+...
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g-~--~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTR-D--PAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC-----------------------------------CHHHHHHHHHTC
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccC-C--CCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 33377888888888887765 6777766666666555 4 5 7788888777754 444555566644444
Q ss_pred C-----ChhHHHHHhccCCCC-CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 158 K-----DISSGKKVFDQMPMR-SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 158 g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
+ ++++|...|+...++ +...+..|...|...+... . -.++.+.+.... ..| +......+...+...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~-~-~~~a~~~~~~a~--~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSF-P-NVNAQQQISQWQ--AAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGC-T-TCCHHHHHHHHH--HHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-C-CHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCC
Confidence 4 667788887776543 5556777777776632211 1 133444444443 222 3445556666676666
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC---ChHHHHHHHHhccC---CCHHHHHHHHHHHHhc----CCh
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG---CLDNALLIFSRMRE---KNVLTWTAMATGMAIH----GKG 301 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~ 301 (482)
.++.+......+.+.-. ..++..+..|...|...| +.++|+..|++..+ ++...+..+...|... +++
T Consensus 156 ~~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 156 TYDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp CGGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CcccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 55544444333333222 234447888888998899 88999999988764 3444446677777554 689
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-----CHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAA-C--CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-----HLE 373 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 373 (482)
++|...|++.. .| +...+..+... + ...++.++|...|++..+. | +...+..|...|. .| +++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 99999999987 33 44555555555 3 5688999999999999884 5 5667777777777 45 899
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh----CCC
Q 011587 374 EAYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS----AER 445 (482)
Q Consensus 374 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 445 (482)
+|.++|++.- .-+...+..|...|.. ..++++|..+|++..+.+. ......|...|.. ..+
T Consensus 305 ~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~----------~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 305 AAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ----------NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp HHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC----------TTHHHHHHHHHHSCTTBCCC
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh----------HHHHHHHHHHHHhCCCCCCC
Confidence 9999999987 6678888888877766 3499999999999988665 4456677777765 458
Q ss_pred chHHHHHHHHhHhcCCc
Q 011587 446 WPDVESVRKQMKVKRVE 462 (482)
Q Consensus 446 ~~~a~~~~~~m~~~~~~ 462 (482)
.++|..+++...+.|..
T Consensus 374 ~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCCH
Confidence 89999999998887753
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=6.8e-13 Score=128.26 Aligned_cols=207 Identities=8% Similarity=-0.059 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh-HHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL-DNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLD 309 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 309 (482)
+.+...++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+..+|...|++++|...|+
T Consensus 85 ~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444433333 45666777777777777777 777777777653 346677888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc--------CCH
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHA---------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA--------GHL 372 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~ 372 (482)
+..+.. |+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 887753 5667777888888888 8888888888888873 344577888888888887 888
Q ss_pred HHHHHHHHcC-CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 373 EEAYNFIMGI-PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
++|++.|++. .+.| +...|..+..+|...|++++|...|+++.+..| .+...+..+..++...|+++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP--------AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHH
Confidence 9998888877 4345 778888888899999999999999999999988 67888888888998889888
Q ss_pred HHHHHHHH
Q 011587 448 DVESVRKQ 455 (482)
Q Consensus 448 ~a~~~~~~ 455 (482)
+|.+.+.+
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 88865443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.9e-13 Score=127.35 Aligned_cols=294 Identities=12% Similarity=0.009 Sum_probs=195.4
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--C-C----chhHHHHHHHHhcCCcccccchHHHHHHHHHhhh--ccCCCCc-C
Q 011587 147 ATTLIHFYASNKDISSGKKVFDQMPM--R-S----SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLV--DVSGVKP-T 216 (482)
Q Consensus 147 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~~~p-~ 216 (482)
+......+...|++++|...|++..+ | + ...|..+...+.. .|++++|...+++... +..+..| .
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-----LHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 33444444445555555555444321 1 1 1234445555555 5555556555554430 0112222 2
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCC--------------------hHHH
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGC--------------------LDNA 273 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~--------------------~~~A 273 (482)
..++..+...+...|++++|...++++.+... .+.....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888889999999988888766431 001124477888889999999 8888
Q ss_pred HHHHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCcHHHH
Q 011587 274 LLIFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPN----AVTFTSLFAACCHAGLVEEG 339 (482)
Q Consensus 274 ~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a 339 (482)
...+++..+ . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 888877653 1 235788888899999999999999998764311 112 33778888899999999999
Q ss_pred HHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC-C---CCCC----HHHHHHHHHHHHhcCCHhHH
Q 011587 340 LHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI-P---IKPD----AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a 407 (482)
...+++..+...-..+ ..++..+...|...|++++|.+.+++. . -.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988763111111 567888899999999999999998876 1 1112 55778888899999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
...++++.+...+.+. ......++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhHhH
Confidence 9999998876442100 0123567778888888888663
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=8.5e-12 Score=104.10 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+..+|..+...|.+.|++++|+..|++..+.... +...+..+..+|.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3445555666666666666666666665554322 4455555666666666666666666666552 233444555555
Q ss_pred HHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH
Q 011587 364 DLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA 441 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (482)
..+...++++.|.+.+.+. ...| +...+..+...+.+.|++++|.+.|+++++..| .+..++..+..+|.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP--------GFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc--------hhhhHHHHHHHHHH
Confidence 5666666666666666555 2222 455566666666666666666666666666666 56666666666666
Q ss_pred hCCCchHHHHHHHHhHh
Q 011587 442 SAERWPDVESVRKQMKV 458 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (482)
+.|++++|...+++..+
T Consensus 153 ~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHh
Confidence 66666666666666554
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=5.4e-13 Score=126.83 Aligned_cols=269 Identities=12% Similarity=-0.019 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCC--C-Cc----hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-
Q 011587 146 VATTLIHFYASNKDISSGKKVFDQMPM--R-SS----ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP- 215 (482)
Q Consensus 146 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p- 215 (482)
.+..+...+...|++++|...|++..+ | +. ..|..+...|.. .|++++|+..+++.... ..+..|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-----LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 344555666777777777777766542 2 22 356667777777 77888888777766510 111122
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCC-----------------hHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGC-----------------LDNALL 275 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 275 (482)
...++..+...+...|++++|...++++.+... .++....++..+...|...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 445778888899999999999999998876521 003345678889999999999 999998
Q ss_pred HHHhccC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCcHHHHHH
Q 011587 276 IFSRMRE-----K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PN----AVTFTSLFAACCHAGLVEEGLH 341 (482)
Q Consensus 276 ~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~ 341 (482)
.+++..+ . ...++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 8887653 1 2347888889999999999999999988653111 11 2377888889999999999999
Q ss_pred HHHHhHHhcCCC----cCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 011587 342 LFDNMKSKWGVE----PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 342 ~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
.+++..+...-. ....++..+...|...|++++|.+.+++. +..+ ...++..+...|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999887631111 12567888899999999999999999876 1111 24577888889999999999999
Q ss_pred HHHHHHhcCC
Q 011587 410 VGKILLQLQP 419 (482)
Q Consensus 410 ~~~~~~~~~~ 419 (482)
.++++.+...
T Consensus 365 ~~~~al~~~~ 374 (411)
T 4a1s_A 365 YAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998776
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=1.1e-11 Score=103.45 Aligned_cols=164 Identities=17% Similarity=0.076 Sum_probs=125.6
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
+..+|..+...|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|...+......... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 566777778888888888888888877763 35667777888888888888888888887765432 55666667777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 77888888888888888773 3446677788888888888888888888877 3344 677788888888888888888
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
...|+++++.+|
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 888888888776
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.8e-11 Score=113.86 Aligned_cols=232 Identities=6% Similarity=-0.021 Sum_probs=181.4
Q ss_pred HHHHHhcCCcccccchHHHHHHHHHhhhccC----CCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC----CC
Q 011587 181 MINGYCSQSKKAKDCAFNALVLFRDMLVDVS----GVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM----PE 251 (482)
Q Consensus 181 li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----p~ 251 (482)
....+.. .|++++|+..|++.. .. +-.+ ...++..+...+...|+++.|...+.+..+.... ++
T Consensus 109 ~g~~~~~-----~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 109 RGMYELD-----QREYLSAIKFFKKAE--SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHH-----TTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHH-----hcCHHHHHHHHHHHH--HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 4445666 899999999999986 32 1122 3467888999999999999999999998875321 01
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-C
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KN----VLTWTAMATGMAIHGKGNEAIRLLDSMRDC----GV-K 317 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~ 317 (482)
....+++.+...|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 2345788899999999999999999998763 11 247888999999999999999999998762 23 3
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCcCHHHHHHHHHHHhccCC---HHHHHHHHHcCCCCCC-HHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---GVEPHIKHYSCIVDLLGRAGH---LEEAYNFIMGIPIKPD-AIL 390 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 390 (482)
....++..+...+.+.|++++|...+++..+.. +.+.....+..+...|...|+ .++|+.++++.+..|+ ...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345678889999999999999999999987631 122223346778888899999 8999999999865553 446
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+..+...|...|++++|...++++.+...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999988655
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=1.2e-09 Score=108.63 Aligned_cols=401 Identities=6% Similarity=-0.028 Sum_probs=269.1
Q ss_pred ChhhHHHHHHHhc--cCcchHHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCC---hHHHHHHhhcCC--C---CChh
Q 011587 6 GHRCFALLKLKAI--TTPSHIKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQS---TKIVHFVFTHFD--P---PNLF 75 (482)
Q Consensus 6 ~~~~~~~~l~~~~--~~~~~~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~---~~~a~~~~~~~~--~---~~~~ 75 (482)
|..+|...+..+- +....+..+++.+... ++.....+...+..-.+. ++ ++.+.++|+... . |++.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~---~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK---MEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC-----CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 5667777777654 6788899999998876 677777788888887777 77 999999999876 3 7777
Q ss_pred hHHHHhcC----CCC--------ccHHHHHHHHHH-CCC-CCCChhhHHHHHHHhhhccC------cchhhhHHHHHHHH
Q 011587 76 LFNTLIRC----TPP--------QDSVLVFAYWVS-KGL-LTFDDFTYVFALGSCARFCS------LSTLWLGRQIHVHV 135 (482)
Q Consensus 76 ~~~~ll~~----~~~--------~~a~~~~~~m~~-~~~-~p~~~~~~~~ll~~~~~~~~------~~~~~~a~~~~~~~ 135 (482)
.|...+.. ++. +...++|+.... .|. .|.+...|...+........ .++++.+..+|+.+
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 77776654 333 234478887664 465 56355677777765442110 12277888999988
Q ss_pred HHhCCCCchhHHHHHHHHHHh-------------CCChhHHHHHhcc-------CCC--------------C--C-----
Q 011587 136 TKRGFMFNVLVATTLIHFYAS-------------NKDISSGKKVFDQ-------MPM--------------R--S----- 174 (482)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~-------~~~--------------~--~----- 174 (482)
+......-..+|......--. ..+++.|...+.+ +.. | +
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 853111112333222211111 0122233333322 110 0 0
Q ss_pred -chhHHHHHHHHhcCCcc--cccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHH-HHHHHHHHhCCCC
Q 011587 175 -SATWNAMINGYCSQSKK--AKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGA-CVHGYMEKTFYMP 250 (482)
Q Consensus 175 -~~~~~~li~~~~~~~~~--~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~p 250 (482)
...|...+.---..+.. +....+++..+|++.. . -++-+...|...+..+...|+.+.|. ++++......
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL--~-~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--- 374 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA--Q-HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--- 374 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH--H-HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH--H-HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---
Confidence 12455555432221100 0012345667788875 2 23346778888888888889999996 9999998754
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-------------CC------------HHHHHHHHHHHHhcCChHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------------KN------------VLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~ 305 (482)
|.+...|...+...-+.|+++.|.++|+++.+ |+ ..+|...+....+.|+.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 56777888899999999999999999998864 21 236888888888899999999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-
Q 011587 306 RLLDSMRDC-G-VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI- 382 (482)
Q Consensus 306 ~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 382 (482)
.+|.+..+. + ..+......+.+.-. ..++.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|++.
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999876 2 222233333333322 235689999999999995 4456667788888888899999999999987
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...| ....|...+..-.+.|+.+.+.++.+++.+..|
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3333 346888889888999999999999999999988
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=118.74 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-------CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-------FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------ 282 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 282 (482)
+..++..+...+...|++++|..+++++.+. .. +....++..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH--PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999999998874 22 45667788899999999999999999988753
Q ss_pred -----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 283 -----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC------GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 283 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|..+++++.+..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 13457888889999999999999999988764 2222 34567788889999999999999999987731
Q ss_pred -----C-CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C---------CCCC-------HHHHHHHHHHHHhcCCHhHH
Q 011587 351 -----G-VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P---------IKPD-------AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 351 -----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~l~~~~~~~g~~~~a 407 (482)
+ .+....++..+...|...|++++|.+.+++. . ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1 2223557888889999999999999888776 1 1111 12223333344556667777
Q ss_pred HHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 408 EKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
...++......+ .+..++..+..+|.+.|++++|...+++..+
T Consensus 264 ~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDSP--------TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------CH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCc--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778887777776 6778899999999999999999999998764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=2.7e-12 Score=117.93 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=164.3
Q ss_pred hHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC---C
Q 011587 177 TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---P 250 (482)
Q Consensus 177 ~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p 250 (482)
.+..+...+.. .|++++|+..+++...- ..+..| ...++..+...+...|++++|...+++..+.... +
T Consensus 45 ~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 119 (338)
T 3ro2_A 45 IYSQLGNAYFY-----LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 119 (338)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc
Confidence 34444444555 55555555555443200 111122 2456777788888889999999888887664310 0
Q ss_pred CCchhHHHHHHHHHHcCCC--------------------hHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCCh
Q 011587 251 ENDVFIGTALVDMYSKCGC--------------------LDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKG 301 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~ 301 (482)
.....++..+...|...|+ +++|...+++..+ . ...++..+...+...|++
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 1123477888888888998 8888888877653 1 234678888889999999
Q ss_pred HHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCH
Q 011587 302 NEAIRLLDSMRDCG----VK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 302 ~~a~~~~~~m~~~g----~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 372 (482)
++|...+++..+.. .. ....++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 99999999876431 11 11336778888899999999999999988763111111 55778888999999999
Q ss_pred HHHHHHHHcC-------CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 373 EEAYNFIMGI-------PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 373 ~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++|...+++. +..+ ...++..+...+...|++++|...++++.+..+
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999998876 1111 244777888899999999999999999998765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=1.3e-10 Score=105.59 Aligned_cols=214 Identities=10% Similarity=0.052 Sum_probs=174.3
Q ss_pred HHHHHHHHHhhhccCCCCcCHHHHHHHHHHhh-------ccCch-------HHHHHHHHHHHHh-CCCCCCchhHHHHHH
Q 011587 197 FNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS-------QLGLL-------EFGACVHGYMEKT-FYMPENDVFIGTALV 261 (482)
Q Consensus 197 ~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~p~~~~~~~~~li 261 (482)
++|..+|++.. . ..+-+...|..++..+. +.|++ ++|..++++.++. . +.+...|..++
T Consensus 33 ~~a~~~~~~al--~-~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~ 106 (308)
T 2ond_A 33 KRVMFAYEQCL--L-VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHH--H-HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHH
T ss_pred HHHHHHHHHHH--H-HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 67888998886 2 12346667777777765 35776 8999999999984 4 66788999999
Q ss_pred HHHHcCCChHHHHHHHHhccC--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCcH
Q 011587 262 DMYSKCGCLDNALLIFSRMRE--K-NVL-TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC-CHAGLV 336 (482)
Q Consensus 262 ~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~ 336 (482)
..+.+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++..+... ++...|....... ...|+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred HHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999875 4 343 899999999999999999999999988643 3444454333332 236999
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-C---CCC--CHHHHHHHHHHHHhcCCHhHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-P---IKP--DAILWRSLLSACNVHGDVALGEKV 410 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 410 (482)
++|..+|++..+. .+-+...|..++..+.+.|++++|..+|++. . +.| ....|..++..+.+.|+.+.|..+
T Consensus 186 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 186 SVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999984 3456788999999999999999999999988 2 355 467899999999999999999999
Q ss_pred HHHHHhcCC
Q 011587 411 GKILLQLQP 419 (482)
Q Consensus 411 ~~~~~~~~~ 419 (482)
++++.+..|
T Consensus 264 ~~~a~~~~p 272 (308)
T 2ond_A 264 EKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 999999988
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.6e-10 Score=105.05 Aligned_cols=215 Identities=10% Similarity=-0.015 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH-------cCCCh-------HHHHHHHHhccC---C-CHHHHHHHHHHH
Q 011587 234 EFGACVHGYMEKTFYMPENDVFIGTALVDMYS-------KCGCL-------DNALLIFSRMRE---K-NVLTWTAMATGM 295 (482)
Q Consensus 234 ~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~ 295 (482)
+.|..+|++++... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67888999999877 778889988888876 35886 899999998865 3 556899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHh-ccCCH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPN-AV-TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLG-RAGHL 372 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 372 (482)
.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+.+...|........ ..|+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999985 444 33 7888999999999999999999999983 3445555654443322 36999
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC--CchhHHHHHHHHHhCCCchH
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC--TSEDFVALSNIYASAERWPD 448 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 448 (482)
++|.++|++. ...| +...|..++..+.+.|++++|..+|+++++..+ +.| ....|..++..+.+.|+.++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~------l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS------LPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS------SCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999987 3234 678899999999999999999999999999631 003 45688889999999999999
Q ss_pred HHHHHHHhHhcCC
Q 011587 449 VESVRKQMKVKRV 461 (482)
Q Consensus 449 a~~~~~~m~~~~~ 461 (482)
|..+++++.+...
T Consensus 260 a~~~~~~a~~~~p 272 (308)
T 2ond_A 260 ILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 9999999876543
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=2.5e-09 Score=106.40 Aligned_cols=425 Identities=10% Similarity=-0.025 Sum_probs=281.6
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCC--CC-ChhhHHHHhcC----CC---CccHHHHH
Q 011587 24 IKQIHAQLITNALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFD--PP-NLFLFNTLIRC----TP---PQDSVLVF 93 (482)
Q Consensus 24 ~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~ll~~----~~---~~~a~~~~ 93 (482)
....++...+.+ +.+...+..++..+.+. +.++.+..+|+.+. -| ....|...+.. ++ ++.+.++|
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~---~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSL---KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344455555544 57888999999999988 99999999999887 23 33445555544 66 99999999
Q ss_pred HHHHHCCCCCCChhhHHHHHHHhhhccCc------chhhhHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh--------
Q 011587 94 AYWVSKGLLTFDDFTYVFALGSCARFCSL------STLWLGRQIHVHVTK-RGF-MF-NVLVATTLIHFYAS-------- 156 (482)
Q Consensus 94 ~~m~~~~~~p~~~~~~~~ll~~~~~~~~~------~~~~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~-------- 156 (482)
++.+.....|++...|..-+....+.+ + +..+.+.++|+..+. .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999986522238888888777665544 3 012445578887766 366 55 45688888876543
Q ss_pred -CCChhHHHHHhccCCC-CC---chhH---HHHHHHHhcCCc-----ccccchHHHHHHHHHhhhccCCC----C-----
Q 011587 157 -NKDISSGKKVFDQMPM-RS---SATW---NAMINGYCSQSK-----KAKDCAFNALVLFRDMLVDVSGV----K----- 214 (482)
Q Consensus 157 -~g~~~~A~~~~~~~~~-~~---~~~~---~~li~~~~~~~~-----~~~~~~~~a~~~~~~m~~~~~~~----~----- 214 (482)
.++++.+..+|++... |. ..+| ..+-..+..... -....++.|...+.++..-..++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 3456788899988764 21 1222 222222111000 00123344555554432101111 0
Q ss_pred ------c-----C---HHHHHHHHHHhhccC-------chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHH
Q 011587 215 ------P-----T---DTTMVCVLSVSSQLG-------LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNA 273 (482)
Q Consensus 215 ------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A 273 (482)
| + ...|...+..--..+ ..+.+..+|++++... +....+|...+..+...|+.++|
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~---p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV---CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 1 123444444333222 1233557788888876 66888999999999999999999
Q ss_pred H-HHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHH
Q 011587 274 L-LIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV---------KPN------------AVTFTSLFA 328 (482)
Q Consensus 274 ~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~ 328 (482)
. ++|++... | +...|-..+...-+.|++++|..+|+++.+... .|+ ...|...+.
T Consensus 363 ~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 363 ITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 6 99998874 3 555677788888899999999999999876410 132 235777777
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHh
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA-GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 405 (482)
...+.|+.+.|..+|.++.+. ........|...+..-.+. ++.+.|.++|+.. ..+-+...|...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 777889999999999999883 1122334444333333344 4589999999987 33336667788888888899999
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.|..+|++++...++. ......|..++..-.+.|+.+.+.++.+++.+.-..
T Consensus 522 ~AR~lferal~~~~~~-----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDS-----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSST-----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999987720 013567888888889999999999999999876543
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.3e-11 Score=119.39 Aligned_cols=211 Identities=10% Similarity=-0.026 Sum_probs=180.6
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCch-HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL-EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
.+.+++++..++... ...+.+...+..+...+...|++ ++|...++++++.. +.+...|..+...|.+.|+++
T Consensus 81 ~~~~~~al~~l~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 81 QEEMEKTLQQMEEVL---GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHHH---TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHh---ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 344667888888764 22334788899999999999999 99999999999987 678899999999999999999
Q ss_pred HHHHHHHhccC--CCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-------
Q 011587 272 NALLIFSRMRE--KNVLTWTAMATGMAIH---------GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA------- 333 (482)
Q Consensus 272 ~A~~~~~~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------- 333 (482)
+|...|++..+ |+..++..+...|... |++++|+..|++..+... -+...+..+..+|...
T Consensus 155 ~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 155 SAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999874 6778889999999999 999999999999988643 3678888999999988
Q ss_pred -CcHHHHHHHHHHhHHhcCCC---cCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHH
Q 011587 334 -GLVEEGLHLFDNMKSKWGVE---PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 334 -~~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 407 (482)
|++++|...|++..+. .+ .+...|..+..+|...|++++|.+.|++. .+.| +...+..+...+...|++++|
T Consensus 234 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 234 PKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 23 47889999999999999999999999988 4445 667788888899999999888
Q ss_pred HHHHH
Q 011587 408 EKVGK 412 (482)
Q Consensus 408 ~~~~~ 412 (482)
.+.+.
T Consensus 312 i~~~~ 316 (474)
T 4abn_A 312 LESKG 316 (474)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 87554
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=8.8e-12 Score=117.26 Aligned_cols=227 Identities=8% Similarity=-0.075 Sum_probs=174.2
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCC-C--CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C-----CHHHHH
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYM-P--ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K-----NVLTWT 289 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~-p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 289 (482)
....+...|++++|...++++.+.-.. | +....++..+...|...|++++|...+++..+ + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999875210 0 12456789999999999999999999988763 1 235788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC-CcCHHHHH
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGV-EPHIKHYS 360 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 360 (482)
.+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999988653 1111 1247888899999999999999999998871 123 33467888
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-------PIKPDAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
.+...|.+.|++++|.+.+++. +.+.....+..+...+...|+ +++|..++++. +.. ....
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~------~~~~ 339 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY------ADLE 339 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH------HHHH
Confidence 9999999999999999999876 211123345667778888898 77777777765 220 1345
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..+..+...|.+.|++++|...+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5778899999999999999999998864
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=8.9e-12 Score=113.28 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=168.2
Q ss_pred chhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccC-------CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC
Q 011587 175 SATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-------GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF 247 (482)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 247 (482)
..++..+...+.. .|++++|+..|+++. .. ........+..+...+...|++++|...++++.+..
T Consensus 27 ~~~~~~l~~~~~~-----~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 27 LRTLHNLVIQYAS-----QGRYEVAVPLCKQAL--EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHH--HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4567777777877 888888888888776 31 223345678889999999999999999999988752
Q ss_pred -----CCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 248 -----YMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----------K-NVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 248 -----~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
..++....++..+...|...|++++|...|++..+ + ...++..+...+...|++++|..+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11134567788999999999999999999988763 1 3456888899999999999999999998
Q ss_pred HhC------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CCCcC-------HHHHHHHHHHHhccCC
Q 011587 312 RDC------GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW------GVEPH-------IKHYSCIVDLLGRAGH 371 (482)
Q Consensus 312 ~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-------~~~~~~li~~~~~~g~ 371 (482)
.+. +..| ...++..+...|...|++++|...++++.+.. ...+. ...+..+...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 764 2223 34577888899999999999999999988631 01111 1122223333344455
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.++...++.. ...| ...++..+...|...|++++|...++++++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55556666665 2334 566788899999999999999999999988755
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=9e-11 Score=97.57 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=78.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc
Q 011587 290 AMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA 369 (482)
Q Consensus 290 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 369 (482)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHh
Confidence 33334444444444444444443321 113334444444444444444444444444441 122344444444555555
Q ss_pred CCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCch
Q 011587 370 GHLEEAYNFIMGI-P-IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWP 447 (482)
Q Consensus 370 g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (482)
|++++|.+.+++. . .+.+...+..+...+...|++++|...++++.+..+ .+...+..++..+.+.|+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--------NEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHcCCHH
Confidence 5555555555444 1 122444555555556666666666666666666555 45556666666666666666
Q ss_pred HHHHHHHHhHh
Q 011587 448 DVESVRKQMKV 458 (482)
Q Consensus 448 ~a~~~~~~m~~ 458 (482)
+|...+++..+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=6.1e-11 Score=119.32 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+|+.|...|.+.|++++|+..|++..+.... +...+..+..+|.+.|++++|...|++..+. -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345555666666666666666666666554221 3455666666666666666666666666652 1234556666666
Q ss_pred HHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
+|...|++++|++.|++. .+.| +...|+.+..+|...|++++|+..|+++++..| .+...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--------~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--------DFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHhhhhhHHHh
Confidence 666666666666666655 3344 456667777777777777777777777777777 566777777777777
Q ss_pred CCCchHHHHHHHHhH
Q 011587 443 AERWPDVESVRKQMK 457 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~ 457 (482)
.|++++|.+.+++..
T Consensus 158 ~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 158 VCDWTDYDERMKKLV 172 (723)
T ss_dssp TTCCTTHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 777777776666554
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=2.3e-09 Score=100.18 Aligned_cols=261 Identities=13% Similarity=0.022 Sum_probs=182.5
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhCCC-CCC--chhHHHHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTD----TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM-PEN--DVFIGTALVDMYS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~--~~~~~~~li~~~~ 265 (482)
.|++++|...+++.. ...-..+. .++..+...+...|+++.|...+++....... +.+ ...++..+...+.
T Consensus 27 ~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 27 DGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp TTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 788889999888875 32212222 24566677788899999999999988764310 011 1233567888899
Q ss_pred cCCChHHHHHHHHhccC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHHHHHH
Q 011587 266 KCGCLDNALLIFSRMRE----------K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK--P--NAVTFTSLFAAC 330 (482)
Q Consensus 266 ~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~ll~~~ 330 (482)
..|++++|...+++..+ + ...++..+...+...|++++|...+++....... + ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 99999999999988753 1 1245667788889999999999999988653221 1 235677788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHH-----HHHHHHhccCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYS-----CIVDLLGRAGHLEEAYNFIMGI-PIKPD-----AILWRSLLSACN 399 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~ 399 (482)
...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999876311111111222 2334577899999999999887 22221 335667788899
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCc-hhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTS-EDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..|++++|...++++....+..+. .++. .++..+..++...|++++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRL---MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcc---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998775441100 0122 3667788889999999999998887653
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2e-10 Score=95.39 Aligned_cols=164 Identities=12% Similarity=0.018 Sum_probs=139.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
....+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455677788889999999999999998875 367788889999999999999999999988763 3367788888889
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 407 (482)
+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999883 4557788888999999999999999999887 22 33678888999999999999999
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
...++++.+..|
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999998877
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.2e-10 Score=109.25 Aligned_cols=227 Identities=10% Similarity=-0.022 Sum_probs=163.3
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHhCCC-C--CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C-----CHHHH
Q 011587 222 CVLSVSSQLGLLEFGACVHGYMEKTFYM-P--ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K-----NVLTW 288 (482)
Q Consensus 222 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~ 288 (482)
.....+...|++++|...++++.+.... + +....++..+...|...|+++.|...+++..+ + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3445567889999999999998765310 0 12355778888899999999999988887653 1 23567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCcCHHHHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEPHIKHYS 360 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 360 (482)
+.+..+|...|++++|...|++..+. +..+ ...++..+..+|...|++++|...+++..+- .+.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88888999999999999999887652 2111 2346777888889999999999999988761 12233367788
Q ss_pred HHHHHHhccCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCc
Q 011587 361 CIVDLLGRAGHLEEAYNFIMGI-------PIKPDAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTS 430 (482)
Q Consensus 361 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 430 (482)
.+...|.+.|++++|.+.+++. +.+.....+..+...+...++ +.+|...+++ .+.. ....
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~------~~~~ 336 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLH------AYIE 336 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCH------HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCCh------hHHH
Confidence 8889999999999999888876 111223455666666777777 6677776665 2210 1234
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 431 EDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
..+..+...|.+.|++++|...+++..
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566788999999999999999888775
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=3.2e-09 Score=99.45 Aligned_cols=303 Identities=9% Similarity=0.017 Sum_probs=209.4
Q ss_pred ChhhHHHHHHHh--hhccCcchhhhHHHHHHHHHHh--CCCC--chhHHHHHHHHH--HhCCChhHHH---------HHh
Q 011587 105 DDFTYVFALGSC--ARFCSLSTLWLGRQIHVHVTKR--GFMF--NVLVATTLIHFY--ASNKDISSGK---------KVF 167 (482)
Q Consensus 105 ~~~~~~~ll~~~--~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~--~~~g~~~~A~---------~~~ 167 (482)
+...-+.+-.-| .+.+ + +++|.++++++.+. .+.. +...|-.++..- .-.+.+..+. +.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~-~--~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQF-S--VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp HHHHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-C--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 444444454455 4445 6 99999999887663 2222 333344444321 1112222222 444
Q ss_pred ccCCC---C--Cch---hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCC-CCc----CHHHHHHHHHHhhccCchH
Q 011587 168 DQMPM---R--SSA---TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSG-VKP----TDTTMVCVLSVSSQLGLLE 234 (482)
Q Consensus 168 ~~~~~---~--~~~---~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~ 234 (482)
+.+.. + +.. .|-.....+.. .|++++|+..|++.. ... -.+ ...++..+...+...|+++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~-----~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFD-----QKEYVEAIGYYREAE--KELPFVSDDIEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH--HHHhhCCChHHHHHHHHHHHHHHHHcCCcH
Confidence 44321 1 111 12223344566 899999999999886 221 112 2457888899999999999
Q ss_pred HHHHHHHHHHHhCCC-C---CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----C----CHHHHHHHHHHHHhcCCh
Q 011587 235 FGACVHGYMEKTFYM-P---ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----K----NVLTWTAMATGMAIHGKG 301 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~-p---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~ 301 (482)
.|...+.+..+.... + .....+++.+...|...|++++|...|++..+ + ...++..+..+|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 999999998764310 0 11355778899999999999999999988764 1 235788889999999999
Q ss_pred HHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC---CCcCHHHHHHHHHHHhccCC--
Q 011587 302 NEAIRLLDSMRD-----CGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG---VEPHIKHYSCIVDLLGRAGH-- 371 (482)
Q Consensus 302 ~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~-- 371 (482)
++|...+++..+ ... ....++..+...+.+.|++++|...+++..+... .+.....+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999876 432 2367788899999999999999999999887421 22224456677777888888
Q ss_pred -HHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 372 -LEEAYNFIMGIPIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 372 -~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
..+|+..+++.+..|+ ...+..+...|...|++++|...|+++.+..
T Consensus 318 ~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 318 KIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8899999998754443 3456778888999999999999999988754
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=6.8e-10 Score=96.00 Aligned_cols=205 Identities=9% Similarity=-0.056 Sum_probs=156.7
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHH
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAM 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 291 (482)
.|+..+......+...|++++|...|+++.+... +++...+..+..++...|++++|+..|++..+ | +..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4668888899999999999999999999999873 26777888899999999999999999998874 3 56788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc--CHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNA-------VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP--HIKHYSCI 362 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 362 (482)
..+|...|++++|...+++..+.... +. ..|..+...+...|++++|...|++..+. -+. +...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999886422 34 45777778888999999999999999873 233 35677778
Q ss_pred HHHHhccCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-P-IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI 439 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (482)
...|...|+. .++++ . ...+...|.... ....+.+++|...++++.+..| .+..+...+...
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP--------NRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC--------CCHHHHHHHHHH
Confidence 8887665543 22222 1 122444554443 3345778999999999999999 566666555443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=5.5e-09 Score=97.63 Aligned_cols=291 Identities=10% Similarity=-0.026 Sum_probs=171.1
Q ss_pred HHHHhCCChhHHHHHhccCC----CCCc----hhHHHHHHHHhcCCcccccchHHHHHHHHHhhhc--cCCCCc-CHHHH
Q 011587 152 HFYASNKDISSGKKVFDQMP----MRSS----ATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVD--VSGVKP-TDTTM 220 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~~~ 220 (482)
..+...|++++|...+++.. ..+. .+++.+...+.. .|++++|...+++...- ..+... ...++
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-----KGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33444555555555544321 1111 134444555556 66666676666665410 111110 12335
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhC----CC-CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C------CHHH
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTF----YM-PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K------NVLT 287 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~ 287 (482)
..+...+...|++++|...+++..+.. .. ++.....+..+...+...|++++|...+++..+ + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 566677778888888888887776532 10 011234556677788888888888888877652 1 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHhccCcHHHHHHHHHHhHHhcCCCc---CHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN--AVTFT----SLFAACCHAGLVEEGLHLFDNMKSKWGVEP---HIKH 358 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 358 (482)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.... ...+ ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~ 255 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHH
Confidence 77777888888999999998888764311111 11111 2234466889999999998888762 2111 1235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-------CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccc-ccCC
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-------PIKPDA-ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVD-VACT 429 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 429 (482)
+..+...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++.+.....+... +...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~ 335 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 335 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHc
Confidence 667778888889999998888765 211222 2556667778889999999999998887544211000 0011
Q ss_pred chhHHHHHHHHHhCCCchH
Q 011587 430 SEDFVALSNIYASAERWPD 448 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~ 448 (482)
......++..+...+..++
T Consensus 336 g~~~~~ll~~~~~~~~~~~ 354 (373)
T 1hz4_A 336 GEAMAQQLRQLIQLNTLPE 354 (373)
T ss_dssp HHHHHHHHHHHHHTTCSCH
T ss_pred cHHHHHHHHHHHhCCCCch
Confidence 2233455556666666533
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=8.7e-10 Score=95.31 Aligned_cols=191 Identities=13% Similarity=-0.035 Sum_probs=131.3
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLF 327 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 327 (482)
.++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567777888888888888888888887763 56666666888888888888888888888776432 556777788
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCcCH-------HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH---HHHHHHH
Q 011587 328 AACCHAGLVEEGLHLFDNMKSKWGVEPHI-------KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI---LWRSLLS 396 (482)
Q Consensus 328 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~ 396 (482)
.++...|++++|...+++..+. .+.+. ..|..+...+...|++++|.+.|++. ...|+.. .+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 8888888888888888888873 23334 45667777777888888888888776 4444432 3334444
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+.. .+...++++..... .+...|.... ....+.+++|...+++..+..
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~--------~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLAS--------SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTT--------TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHHHhccc--------CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 4433 34455666666665 4444444333 334566799999999887654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=8.5e-10 Score=111.05 Aligned_cols=161 Identities=10% Similarity=0.071 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMA 292 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 292 (482)
+...|+.+...+.+.|++++|.+.|+++++.. +.+...+..+..+|.+.|++++|++.|++..+ .+..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~---P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45688899999999999999999999999887 67888899999999999999999999998864 3577889999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
.+|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+. -+-+...+..+...|...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998876432 5778888899999999999999999998883 244577888899999999998
Q ss_pred HHHHHHHHcC
Q 011587 373 EEAYNFIMGI 382 (482)
Q Consensus 373 ~~A~~~~~~~ 382 (482)
++|.+.+++.
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=2e-09 Score=96.04 Aligned_cols=218 Identities=14% Similarity=0.022 Sum_probs=152.2
Q ss_pred HHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhC-----CCCCCchhHHHHHHHHHHcCCChHH
Q 011587 198 NALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTF-----YMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
+|+++++... ....+....++..+...+...|++++|...++++.+.. ..++....++..+...|...|++++
T Consensus 26 ~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 26 QALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 3444554443 22223356788899999999999999999999988762 1113456788999999999999999
Q ss_pred HHHHHHhccC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccC
Q 011587 273 ALLIFSRMRE-------K----NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC------GVKP-NAVTFTSLFAACCHAG 334 (482)
Q Consensus 273 A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~ 334 (482)
|...|++..+ + ...++..+...|...|++++|...+++..+. +..| ...++..+...|...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999998763 1 3467888999999999999999999998764 1123 3567888899999999
Q ss_pred cHHHHHHHHHHhHHhc------CCCc-CHHHHHHHHHHHhcc------CCHHHHHHHHHcCC-CCC-CHHHHHHHHHHHH
Q 011587 335 LVEEGLHLFDNMKSKW------GVEP-HIKHYSCIVDLLGRA------GHLEEAYNFIMGIP-IKP-DAILWRSLLSACN 399 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 399 (482)
++++|...+++..+.. ...+ ....+..+...+... ..+..+...++..+ ..| ...++..+...|.
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 263 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYR 263 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999988731 1111 222333333333332 23445555555553 223 4567888999999
Q ss_pred hcCCHhHHHHHHHHHHhc
Q 011587 400 VHGDVALGEKVGKILLQL 417 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~ 417 (482)
..|++++|...++++++.
T Consensus 264 ~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 264 RQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=1.1e-09 Score=97.72 Aligned_cols=223 Identities=12% Similarity=0.036 Sum_probs=154.0
Q ss_pred hccCchHHHHHHHHHHHHh-----CCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------CCHHHHHHH
Q 011587 228 SQLGLLEFGACVHGYMEKT-----FYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------KNVLTWTAM 291 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 291 (482)
...|+++.|...+++.++. +..++....++..+...|...|++++|...|++..+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888887663 111134567788899999999999999999988762 134578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----C-CCcCHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDC------GV-KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-----G-VEPHIKH 358 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 358 (482)
...|...|++++|...+++..+. .. +....++..+...+...|++++|...++++.+.. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988654 11 2235677888889999999999999999988730 1 2234567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-C---------CCC-CHHHHHHHHHHHHhcCCHhHH------HHHHHHHHhcCCCc
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-P---------IKP-DAILWRSLLSACNVHGDVALG------EKVGKILLQLQPEV 421 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~g~~~~a------~~~~~~~~~~~~~~ 421 (482)
+..+...|...|++++|.+.+++. . ..+ ....|..+...+...+....+ ...++......+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP-- 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH--
Confidence 888889999999999999888766 1 122 222333333333333332222 222221111112
Q ss_pred ccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
....++..+..+|.+.|++++|..++++..+
T Consensus 250 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 ------TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999998764
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=6.3e-09 Score=81.06 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGD 403 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 403 (482)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++ .. +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444431 1223334444444444444444444444443 11 1233444445555555555
Q ss_pred HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 404 VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
+++|.+.++++.+..+ .+...+..++..+.+.|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDP--------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555555 4445555555555555555555555555543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=5.3e-09 Score=94.13 Aligned_cols=207 Identities=10% Similarity=-0.069 Sum_probs=152.8
Q ss_pred chHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCC---CCCCchhHHHHHHHHHHcCCChH
Q 011587 195 CAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY---MPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 195 ~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
++++|...|++. ...+...|++++|...+.+..+... .|.....+|+.+..+|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477787777765 3457788999999999998876521 01112568899999999999999
Q ss_pred HHHHHHHhccCC-----C----HHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHhccCcH
Q 011587 272 NALLIFSRMREK-----N----VLTWTAMATGMAIH-GKGNEAIRLLDSMRDCGVKP-N----AVTFTSLFAACCHAGLV 336 (482)
Q Consensus 272 ~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~~~~ 336 (482)
+|+..|++..+- + ..+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999988641 1 35788899999996 99999999999887632110 1 35688889999999999
Q ss_pred HHHHHHHHHhHHhcCCCc-CH-----HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH------HHHHHHHHHH--hc
Q 011587 337 EEGLHLFDNMKSKWGVEP-HI-----KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI------LWRSLLSACN--VH 401 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~-~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~ 401 (482)
++|...|++..+. .... .. ..|..+..++...|++++|...|++. .+.|+.. .+..++.++. ..
T Consensus 175 ~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 175 IEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999999984 2221 11 25777888899999999999999988 5555422 3444555554 45
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 011587 402 GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 402 g~~~~a~~~~~~~~~~~~ 419 (482)
+++++|...|+.+.+.+|
T Consensus 254 ~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccCCccHH
Confidence 678888888877766655
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=8.3e-08 Score=84.96 Aligned_cols=242 Identities=11% Similarity=0.020 Sum_probs=166.4
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|++..++.-...+. ...+ ......+.+++...|++... ..+.+....+..+.. |...+
T Consensus 26 ~G~yq~~i~e~~~~~----~~~~-~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFS----KVTD-NTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp TTCHHHHTHHHHTSS----CCCC-HHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred hhHHHHHHHHHHhcC----ccch-HHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHHH-Hhccc----
Confidence 788888887444442 1222 23344455777777776642 112334434444444 33433
Q ss_pred HHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 273 ALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 273 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..|.. -+...+...+..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777887763 45566678888999999999999999998776642 2566788889999999999999999999987
Q ss_pred hcCCCc-----CHHHHHHHHHHHh--ccC--CHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 349 KWGVEP-----HIKHYSCIVDLLG--RAG--HLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 349 ~~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
. .| +..+...++.++. ..| +..+|..+|+++ ...|+..+-..++.++.+.|++++|++.++.+.+..
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 55 3566667776643 234 899999999999 445664444455558899999999999999887763
Q ss_pred CCcccc--cccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 419 PEVTFV--DVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 419 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
|+.+.. .-..++.+...++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 210000 000577888677777777786 8899999988654
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2.8e-09 Score=95.90 Aligned_cols=206 Identities=12% Similarity=-0.009 Sum_probs=148.5
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-------C--CHHHHHHHHHHHHhcCChH
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------K--NVLTWTAMATGMAIHGKGN 302 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~ 302 (482)
++++|...+.++ ...|...|++++|...|++..+ + ...+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777776654 4467788999999999987763 1 1468899999999999999
Q ss_pred HHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCH
Q 011587 303 EAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHA-GLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 303 ~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 372 (482)
+|+..+++..+. |-.+ -..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999988653 2111 145788888999996 9999999999998873110111 35788899999999999
Q ss_pred HHHHHHHHcC-CCCCC---H-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHH--
Q 011587 373 EEAYNFIMGI-PIKPD---A-----ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYA-- 441 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 441 (482)
++|+..|++. .+.|+ . ..|..+..++...|++++|...+++.++..|+... ......+..++.++.
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcC
Confidence 9999999987 22332 1 25677788899999999999999999998873110 001123445666665
Q ss_pred hCCCchHHHHHHHHhH
Q 011587 442 SAERWPDVESVRKQMK 457 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~ 457 (482)
..+++++|...++++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 4567888888886654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=6.5e-09 Score=91.85 Aligned_cols=164 Identities=12% Similarity=-0.010 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHH
Q 011587 254 VFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N---VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV-KPN-AVTFTS 325 (482)
Q Consensus 254 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 325 (482)
...+..+...+.+.|++++|...|+++.+ | + ..++..+..+|.+.|++++|...|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444444444555555555555554442 1 1 33444444555555555555555555544311 111 223334
Q ss_pred HHHHHhc--------cCcHHHHHHHHHHhHHhcCCCcCHHH-----------------HHHHHHHHhccCCHHHHHHHHH
Q 011587 326 LFAACCH--------AGLVEEGLHLFDNMKSKWGVEPHIKH-----------------YSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 326 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~li~~~~~~g~~~~A~~~~~ 380 (482)
+..++.. .|++++|...|+++.+.. +.+... +..+...|.+.|++++|...|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 555555555555555421 111111 2566788899999999999998
Q ss_pred cC-CCCCC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHHHhcCC
Q 011587 381 GI-PIKPD----AILWRSLLSACNVH----------GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 381 ~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 419 (482)
+. ...|+ ...+..+..+|... |++++|...++++++..|
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 87 32343 45677777778766 899999999999999988
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1.4e-08 Score=79.09 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL 366 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 366 (482)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 466677777888888888888888776542 35667777777888888888888888888773 244566777888888
Q ss_pred hccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 367 GRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 367 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888876 22 33567778888888888999999999988888766
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=2.1e-09 Score=108.61 Aligned_cols=169 Identities=12% Similarity=-0.017 Sum_probs=91.4
Q ss_pred hccCchHHHHHHHHHHH--------HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHH
Q 011587 228 SQLGLLEFGACVHGYME--------KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMA 296 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 296 (482)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|++.|++..+ .+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 45566666666666655 322 34455555566666666666666666665553 24455555666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
..|++++|+..|++..+.... +...+..+..++.+.|++++ ...|++..+. -+.+...|..+..+|.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665554321 34455555556666666666 6666665552 2234455556666666666666666
Q ss_pred HHHHcC-CCCCC-HHHHHHHHHHHHhcCC
Q 011587 377 NFIMGI-PIKPD-AILWRSLLSACNVHGD 403 (482)
Q Consensus 377 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 403 (482)
+.|++. .+.|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666655 44453 3344444444444443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=1.9e-07 Score=82.71 Aligned_cols=174 Identities=11% Similarity=0.062 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 236 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
+...+++..+.+ +++......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555554443 22334445666667777777777777766633 2445666667777777777777777777
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHh--ccC--cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHc
Q 011587 311 MRDCGVKP-----NAVTFTSLFAACC--HAG--LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMG 381 (482)
Q Consensus 311 m~~~g~~p-----~~~~~~~ll~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 381 (482)
|.+. .| +..+...+..++. ..| +..+|..+|+++.++ .|+..+-..++.++.+.|++++|.+.++.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7664 44 2444455555522 223 677777777777653 33323333344467777777777777764
Q ss_pred C-CC----------CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 382 I-PI----------KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 382 ~-~~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+ .. .| +..+...+|......|+ +|.++++++.+..|
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 4 11 13 45555455555555565 67777777777777
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1.1e-07 Score=81.87 Aligned_cols=186 Identities=12% Similarity=-0.007 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH-HHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN----VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PNA-VTFT 324 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~ 324 (482)
+...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788888999999999988874 32 246777888888889999999999888775322 111 1344
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCC
Q 011587 325 SLFAACCH------------------AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKP 386 (482)
Q Consensus 325 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 386 (482)
.+..++.. .|+.++|...|+++.+. .+-+...+....... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----HHHHHH----------
Confidence 44444443 45666777777766663 222222222111100 000000
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCc---hhHHHHHHHHHhCCCchHHHHHHHHhHhcCCcc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTS---EDFVALSNIYASAERWPDVESVRKQMKVKRVET 463 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 463 (482)
......+...+.+.|++++|...|+++++..| .+. ..+..+..++.+.|++++|.+.++.+...+...
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--------DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--------CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112356678899999999999999999988 333 578899999999999999999999888765543
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=2.6e-09 Score=85.52 Aligned_cols=142 Identities=8% Similarity=-0.062 Sum_probs=98.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
..+...|++++|+..++...... +-+...+..+...|.+.|++++|...|++..+. -+-+...|..+...|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 33445566777777777665431 113344556677777778888888888877773 244567777788888888888
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHH-HHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 373 EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEK-VGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
++|...|++. .+.| +...|..+...|.+.|++++|.+ .++++++..| .++.+|......+.+.|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P--------~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP--------GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST--------TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHhCc
Confidence 8888888776 4445 56777788888888888776554 4588888888 677888877777777664
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.90 E-value=7.3e-08 Score=81.77 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHH----------------HHHHHHcCCChHHHHHHHHhccC--
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTA----------------LVDMYSKCGCLDNALLIFSRMRE-- 282 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~-- 282 (482)
......+...|++++|...|+++.+.. |.+...+.. +..+|.+.|++++|+..|++..+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 334445566777777777777777665 334444444 44444444555555544444432
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 283 -KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 283 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
.+...|..+..+|...|++++|+..|++..+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 13344444444444444555555444444443
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=5.8e-08 Score=85.66 Aligned_cols=172 Identities=10% Similarity=0.024 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC-HHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN---AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-IKH 358 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 358 (482)
.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|+++.+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 46677778888899999999999999999886422 3 567788889999999999999999999985221222 456
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHcC-CCCCC-HHHH-----------------HHHHHHHHhcCCHhHHHHHH
Q 011587 359 YSCIVDLLGR--------AGHLEEAYNFIMGI-PIKPD-AILW-----------------RSLLSACNVHGDVALGEKVG 411 (482)
Q Consensus 359 ~~~li~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~a~~~~ 411 (482)
+..+..++.. .|++++|...|++. ...|+ .... ..+...|...|++++|...|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888888 99999999999987 32342 2222 45677889999999999999
Q ss_pred HHHHhcCCCcccccccCCchhHHHHHHHHHhC----------CCchHHHHHHHHhHhcC
Q 011587 412 KILLQLQPEVTFVDVACTSEDFVALSNIYASA----------ERWPDVESVRKQMKVKR 460 (482)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 460 (482)
+++++..|+. ......+..+..+|.+. |++++|...++++.+..
T Consensus 172 ~~~l~~~p~~-----~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDT-----PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTS-----TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCC-----chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999998820 01345778888888876 89999999999988654
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=9e-08 Score=96.66 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=133.8
Q ss_pred cccchHHHHHHHHHhhh----cc-CCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc
Q 011587 192 AKDCAFNALVLFRDMLV----DV-SGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSK 266 (482)
Q Consensus 192 ~~~~~~~a~~~~~~m~~----~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~ 266 (482)
..|++++|++.+++... .. ...+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHHHH
Confidence 36788888888888740 00 2223456677888888888888888888888888877 6678888888888888
Q ss_pred CCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 267 CGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.|++++|++.|++..+ | +...|..+..+|.+.|++++ +..|++..+.... +...+..+..++.+.|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888764 3 56778888888888888888 8888888776432 5677888888888888888888888
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCC--------HHHHHHHHHcC
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGH--------LEEAYNFIMGI 382 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~A~~~~~~~ 382 (482)
+++.+. -+-+...+..+..++...++ +++|.+.+..+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888762 22235666677777765444 44555555554
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=2.4e-07 Score=78.75 Aligned_cols=172 Identities=9% Similarity=-0.074 Sum_probs=108.4
Q ss_pred HHHHHHhccC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 011587 273 ALLIFSRMRE-KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG----LVEEGLHLFDNMK 347 (482)
Q Consensus 273 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 347 (482)
|.++|++..+ .+..++..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444432 355566666666666677777777777766654 44555556666665 5 6777777777776
Q ss_pred HhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC-CCCCC---HHHHHHHHHHHHh----cCCHhHHHHHHHHHH
Q 011587 348 SKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI-PIKPD---AILWRSLLSACNV----HGDVALGEKVGKILL 415 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 415 (482)
+. | +...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .+++++|..+|++..
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 62 3 45566666666665 66777777777766 33332 5666667666766 667777777777777
Q ss_pred hcCCCcccccccCCchhHHHHHHHHHhC-C-----CchHHHHHHHHhHhcCC
Q 011587 416 QLQPEVTFVDVACTSEDFVALSNIYASA-E-----RWPDVESVRKQMKVKRV 461 (482)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 461 (482)
+. + .+...+..|...|... | ++++|...+++..+.|.
T Consensus 157 ~~-~--------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-S--------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-S--------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-C--------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76 2 2445666666666543 2 67777777777766654
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=5.8e-08 Score=86.95 Aligned_cols=177 Identities=11% Similarity=0.003 Sum_probs=126.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 271 DNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 271 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
+.....+......+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3444555555544556667777778888888888888888877642 25667777888888888888888888888763
Q ss_pred CCCcCHHHHHHH-HHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 351 GVEPHIKHYSCI-VDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 351 ~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
.|+....... ...+...++.++|.+.+++. ...| +...+..+...+...|++++|...++++++..|+ .
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~------~ 252 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT------A 252 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------G
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc------c
Confidence 3444332222 23355667777777777766 3344 6777888888888889999999999999888872 0
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 428 CTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
.+...+..++..+...|+.++|...+++..
T Consensus 253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 226788888888888898888888776643
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=4.2e-07 Score=81.26 Aligned_cols=213 Identities=15% Similarity=0.134 Sum_probs=135.6
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC--ChHHHHHHHHhccC---CCHHHHHHHHHHH----Hhc---C
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG--CLDNALLIFSRMRE---KNVLTWTAMATGM----AIH---G 299 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~ 299 (482)
..++|....+.++... |....+|+.-...+...| ++++++++++.+.. .+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 3456777777777776 666667777777777777 77777777777764 2444555443333 334 6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC------
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH------ 371 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 371 (482)
++++++.+++++.+...+ +...++.-...+.+.|.++ ++.+.++++.+. -+-|-..|+.-...+.+.++
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 677777777777765433 5566655555555666666 777777777763 23355566655555555555
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhcC---CCcccccccCCchhHHHHHHHHHhCCC
Q 011587 372 LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVAL-GEKVGKILLQLQ---PEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 372 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
++++++.++++ ...| |...|+-+...+.+.|+... +..++.++.+.+ + .++..+..++.+|.+.|+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV--------TSSFALETLAKIYTQQKK 273 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE--------SCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC--------CCHHHHHHHHHHHHccCC
Confidence 66777776665 3333 67777776666666665333 445666555544 3 566777777777777777
Q ss_pred chHHHHHHHHhHh
Q 011587 446 WPDVESVRKQMKV 458 (482)
Q Consensus 446 ~~~a~~~~~~m~~ 458 (482)
.++|.++++.+.+
T Consensus 274 ~~~A~~~~~~l~~ 286 (306)
T 3dra_A 274 YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=6.4e-08 Score=82.14 Aligned_cols=160 Identities=7% Similarity=-0.040 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTA----------------MATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.+......+...|++++|+..|++..+ | +...|.. +..+|.+.|++++|+..|++..+...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 344556678899999999999999875 3 3456666 88999999999999999999988753
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC--HHHHHHHHHcCCCCCCH--HHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH--LEEAYNFIMGIPIKPDA--ILWR 392 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~ 392 (482)
-+...+..+..++...|++++|...|++..+. -+-+...+..+...|...|+ .+.+...++... .|+. ..+.
T Consensus 86 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 -NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 36788899999999999999999999999984 34567788888888876654 445566666652 3443 3344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
....++...|++++|...|+++++..|
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 455567778999999999999999887
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=4.6e-08 Score=80.55 Aligned_cols=157 Identities=11% Similarity=-0.015 Sum_probs=112.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA-CC 331 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 331 (482)
.+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...|++..... |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345667778888888888888888774 356778888888888888888888888876653 243333222111 11
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC---HHHHHHHHHHHHhcCCHhHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD---AILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a 407 (482)
..+....|...+++..+. .+-+...+..+...+...|++++|...|++. ...|+ ...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222233467788887773 2345778888888899999999999988877 55554 55788888888889999999
Q ss_pred HHHHHHHHh
Q 011587 408 EKVGKILLQ 416 (482)
Q Consensus 408 ~~~~~~~~~ 416 (482)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887764
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=3.6e-08 Score=97.73 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=125.0
Q ss_pred CCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 011587 267 CGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLF 343 (482)
Q Consensus 267 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 343 (482)
.|++++|.+.|++..+ .+...|..+...|...|++++|...+++..+... -+...+..+..+|...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999875 3578899999999999999999999999988743 36788889999999999999999999
Q ss_pred HHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhcC
Q 011587 344 DNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVH---GDVALGEKVGKILLQLQ 418 (482)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 418 (482)
++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999984 3456789999999999999999999999987 3344 678888899999999 99999999999999999
Q ss_pred CCcccccccCCchhHHHHH
Q 011587 419 PEVTFVDVACTSEDFVALS 437 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~ 437 (482)
+ .+...|..+.
T Consensus 159 p--------~~~~~~~~l~ 169 (568)
T 2vsy_A 159 V--------GAVEPFAFLS 169 (568)
T ss_dssp C--------CCSCHHHHTT
T ss_pred C--------cccChHHHhC
Confidence 9 6666766555
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=5.8e-08 Score=96.22 Aligned_cols=147 Identities=12% Similarity=-0.061 Sum_probs=114.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+..+|..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999998876 66788999999999999999999999999875 367889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc---CCHHHHHHHHHcC
Q 011587 307 LLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA---GHLEEAYNFIMGI 382 (482)
Q Consensus 307 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 382 (482)
.+++..+... .+...+..+..++.+.|++++|.+.+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999988643 36788899999999999999999999999984 344678889999999999 9999999999987
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=1.5e-07 Score=84.26 Aligned_cols=163 Identities=10% Similarity=-0.041 Sum_probs=116.0
Q ss_pred cCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHH-H
Q 011587 215 PTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTA-M 291 (482)
Q Consensus 215 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l 291 (482)
.+...+..+...+...|++++|...++++.+.. |.+...+..+...+.+.|++++|...++++.. |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 345567777778888888888888888888877 66777888888888888888888888888864 44332222 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 223566677777888888777664 2356677777788888888888888888887741111225667777777777777
Q ss_pred HHHHHHHHHc
Q 011587 372 LEEAYNFIMG 381 (482)
Q Consensus 372 ~~~A~~~~~~ 381 (482)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 7777666653
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=8.8e-08 Score=86.75 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=151.7
Q ss_pred ccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDN 272 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~ 272 (482)
.|++++|.+++++.. .. .+.. .+...++++.|...|.+ ....|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~--k~-~~~~---------~~~~~~~~~~A~~~~~~-----------------a~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAE--KY-LKTS---------FMKWKPDYDSAASEYAK-----------------AAVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHH--HH-HCCC---------SSSCSCCHHHHHHHHHH-----------------HHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHH--HH-cccc---------ccCCCCCHHHHHHHHHH-----------------HHHHHHHcCCHHH
Confidence 577788888888775 11 1111 01114666666666554 3456778899999
Q ss_pred HHHHHHhccCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHH
Q 011587 273 ALLIFSRMREK---------NVLTWTAMATGMAIHGKGNEAIRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEE 338 (482)
Q Consensus 273 A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~ 338 (482)
|...|.+..+- -..+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 99988877631 1457888899999999999999999987542 2111 14577788888888 99999
Q ss_pred HHHHHHHhHHhc---CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-CC---CCC----HHHHHHHHHHHHhcCCHhH
Q 011587 339 GLHLFDNMKSKW---GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI---KPD----AILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 339 a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~ 406 (482)
|...|++..+.. +... ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+..++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 999999987631 1111 1467888899999999999999999877 11 111 2356666777788899999
Q ss_pred HHHHHHHHHhcCCCcccccccCCc---hhHHHHHHHHHhCCCchHHHH
Q 011587 407 GEKVGKILLQLQPEVTFVDVACTS---EDFVALSNIYASAERWPDVES 451 (482)
Q Consensus 407 a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~ 451 (482)
|...|++.+ ..|+. ++. .....++.++ ..|+.+.+..
T Consensus 214 A~~~~~~al-~~p~~------~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGF------SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTS------TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCC------CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999 76631 122 2334555555 5677666655
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=1.3e-05 Score=77.38 Aligned_cols=343 Identities=10% Similarity=-0.031 Sum_probs=211.7
Q ss_pred CChHHHHHHhhcCC--CCChhhHHHHhcC----C-CCccHHHHHHHHHHC-CCCCCChhhHHHHHHHhhhcc-Ccchhhh
Q 011587 57 QSTKIVHFVFTHFD--PPNLFLFNTLIRC----T-PPQDSVLVFAYWVSK-GLLTFDDFTYVFALGSCARFC-SLSTLWL 127 (482)
Q Consensus 57 ~~~~~a~~~~~~~~--~~~~~~~~~ll~~----~-~~~~a~~~~~~m~~~-~~~p~~~~~~~~ll~~~~~~~-~~~~~~~ 127 (482)
++++.+.++|+... .|++..|...+.. + ..+....+|+..... |..|.+...|...+..+.... .+++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 57999999999876 5788888877776 3 456788889888764 544547777777777654321 0233888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------CCChhHHHHHhccCC----CCCchhHHHHHHHHhcCC-
Q 011587 128 GRQIHVHVTKRGFMFNVLVATTLIHFYAS-------------NKDISSGKKVFDQMP----MRSSATWNAMINGYCSQS- 189 (482)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~- 189 (482)
+..+|+..++.....-...|......-.. .+.+..|..+++... ..+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999999874211112223322221111 011222333332221 113345655554322210
Q ss_pred -cccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC
Q 011587 190 -KKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG 268 (482)
Q Consensus 190 -~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g 268 (482)
..+.+..+++..+|+++. . ..+-+...|...+..+.+.|+.+.|..++++.... |. +...+.. |+...
T Consensus 188 ~~~~~~~~~Rv~~~ye~al--~-~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~-~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYIL--D-SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SD-GMFLSLY----YGLVM 256 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHH--H-HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CC-SSHHHHH----HHHHT
T ss_pred cCcchhhHHHHHHHHHHHH--H-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC-cHHHHHH----HHhhc
Confidence 000112456778899886 3 33445778888888888999999999999999988 33 3333332 22211
Q ss_pred ChHHH-HHHHHhcc------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cC
Q 011587 269 CLDNA-LLIFSRMR------------EKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH-AG 334 (482)
Q Consensus 269 ~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~ 334 (482)
+.++. ..+.+... ......|...+....+.++.+.|..+|++. .. ...+...|......-.. .+
T Consensus 257 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 257 DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCC
Confidence 11111 12222211 012245777777777788899999999999 32 12244444322222122 34
Q ss_pred cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
+.+.|..+|+...+.+ +-+...+...++...+.|+.+.|..+|++.. .....|...+..-...|+.+.+..++++.
T Consensus 335 d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6999999999999853 3334566777887888999999999999983 36788998888888899999999999988
Q ss_pred Hh
Q 011587 415 LQ 416 (482)
Q Consensus 415 ~~ 416 (482)
.+
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=3.1e-07 Score=78.07 Aligned_cols=175 Identities=9% Similarity=-0.072 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-CCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 011587 235 FGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMATGMAIHG----KGNEAIRLLD 309 (482)
Q Consensus 235 ~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~ 309 (482)
+|.+.|++..+.| +...+..+...|...+++++|..+|++..+ .+...+..|...|.. + ++++|...|+
T Consensus 4 eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3556666666655 566677778888888888888888887765 356677777777776 6 7888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHhc----cCCHHHHHHHHH
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHLFDNMKSKWGVE-PHIKHYSCIVDLLGR----AGHLEEAYNFIM 380 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 380 (482)
+..+.| +...+..|...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|..+|+
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 887765 55666777777776 78889999998888873 321 126677778888877 778999999988
Q ss_pred cC-CCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHhcCC
Q 011587 381 GI-PIKPDAILWRSLLSACNVH-G-----DVALGEKVGKILLQLQP 419 (482)
Q Consensus 381 ~~-~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 419 (482)
+. ....+...+..|...|... | +.++|..+|++..+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 3334556677777777543 3 89999999999988877
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=1.7e-07 Score=80.57 Aligned_cols=183 Identities=15% Similarity=0.047 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCH----HHHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNV----LTWT 289 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~ 289 (482)
+...+..+...+.+.|++++|...|+++.+.....+.....+..+..+|.+.|++++|+..|+++.+ |+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556667788899999999999999999987631112245788899999999999999999999874 322 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 011587 290 AMATGMAI------------------HGKGNEAIRLLDSMRDCGVKPNAV-TFTSLFAACCHAGLVEEGLHLFDNMKSKW 350 (482)
Q Consensus 290 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 350 (482)
.+..++.. .|++++|...|+++.+.. |+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 578999999999998863 4332 2221111 011111111
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 351 GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 351 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+...+|
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 12235667888999999999999987 33343 24677888999999999999999999988887
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=4.6e-06 Score=74.52 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=173.6
Q ss_pred ccchHHHHHHHHHhhhccCCCCcC-HHHHHHHHHHhhccC--chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHH----H
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKPT-DTTMVCVLSVSSQLG--LLEFGACVHGYMEKTFYMPENDVFIGTALVDMY----S 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~----~ 265 (482)
....++|+++++.+. .+.|+ ...|+.--..+...+ +++++.+.++.++... |.+..+|+.-...+ .
T Consensus 46 ~e~s~~aL~~t~~~L----~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 46 EEYSERALHITELGI----NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHH
Confidence 445578999999887 44564 456777777777888 9999999999999988 77778887766666 5
Q ss_pred cC---CChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--
Q 011587 266 KC---GCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN--EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-- 335 (482)
Q Consensus 266 ~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 335 (482)
.. +++++++++++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 55 789999999999975 47788888888888888888 999999999987655 77777766666666666
Q ss_pred ----HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH-HHHHHHcC-CC----CCCHHHHHHHHHHHHhcCCHh
Q 011587 336 ----VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE-AYNFIMGI-PI----KPDAILWRSLLSACNVHGDVA 405 (482)
Q Consensus 336 ----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~ 405 (482)
++++.+.++.+... .+-|...|+.+...+.+.|+... +.++..+. .. ..+...+..+...+.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999999883 45678889888888888887544 55677765 22 347888999999999999999
Q ss_pred HHHHHHHHHHh-cCC
Q 011587 406 LGEKVGKILLQ-LQP 419 (482)
Q Consensus 406 ~a~~~~~~~~~-~~~ 419 (482)
+|.++++.+.+ .+|
T Consensus 276 ~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 276 ESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhccCh
Confidence 99999999987 677
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=1.2e-07 Score=78.13 Aligned_cols=158 Identities=13% Similarity=0.032 Sum_probs=122.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHH-H
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATG-M 295 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 295 (482)
.+......+...|++++|...++++.+.. |.+...+..+..++...|++++|+..|++..+ |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 35566677888999999999999988877 67888999999999999999999999999875 433333322212 2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-cCHHHHHHHHHHHhccCCHHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE-PHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 374 (482)
...+...+|...+++..+... -+...+..+..++...|++++|...|+++.+. .-. .+...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344567888998887642 25778888999999999999999999999874 221 235688899999999999999
Q ss_pred HHHHHHc
Q 011587 375 AYNFIMG 381 (482)
Q Consensus 375 A~~~~~~ 381 (482)
|...|++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888875
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.78 E-value=6.2e-08 Score=77.38 Aligned_cols=134 Identities=8% Similarity=-0.084 Sum_probs=88.1
Q ss_pred ccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
.|++++|+..++... ...| +...+..+...|.+.|++++|.+.++++++.. |.+..+|..+..+|.+.|+++
T Consensus 10 ~~~~e~ai~~~~~a~----~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 10 KADVERYIASVQGST----PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ---ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp HHHHHHHHHHHHHHS----CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred cChHHHHHHHHHHhc----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCchH
Confidence 677888888887764 2334 33455667777778888888888888877776 667777777777777777777
Q ss_pred HHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 272 NALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRL-LDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 272 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
+|+..|++..+ | +..+|..+...|.+.|++++|... +++..+..+ -+...|......+...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 77777777653 3 456677777777777777655544 466655422 14445554444444444
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=4.8e-07 Score=76.84 Aligned_cols=129 Identities=10% Similarity=-0.026 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
.+..+...+...|++++|...|++...++..+|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455667778888888888888888887788888888888888888888888888887754 3356777778888888888
Q ss_pred HHHHHHHHHHhHHhcCCCcCH----------------HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC
Q 011587 336 VEEGLHLFDNMKSKWGVEPHI----------------KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD 387 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 387 (482)
+++|...|++..+. .+.+. ..+..+..+|...|++++|.+.|++. .+.|+
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88888888888773 22222 55666666666677777776666665 44443
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=1.7e-06 Score=77.69 Aligned_cols=170 Identities=8% Similarity=-0.053 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--CCcC--H
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG--VEPH--I 356 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 356 (482)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888899999988887776532211 12234455566778899999999988875211 1111 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC----CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccccccc
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPD-----AILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVA 427 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 427 (482)
.+++.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++...+.+ ...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~--~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--cHH
Confidence 58888899999999999998888765 11122 25788899999999999999999999987643110 000
Q ss_pred CCchhHHHHHHHHHhCCCchHH-HHHHHHhH
Q 011587 428 CTSEDFVALSNIYASAERWPDV-ESVRKQMK 457 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 457 (482)
.-..+|..+..+|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1256788999999999999999 77666643
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.68 E-value=8.8e-07 Score=79.52 Aligned_cols=166 Identities=10% Similarity=-0.078 Sum_probs=122.2
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC-
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N------VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV---KPN- 319 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~- 319 (482)
....+...+..+...|++++|.+.+++..+ + . ...+..+...+...|++++|...+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344556677888899999999999876643 1 1 12344466677888999999999998875321 122
Q ss_pred -HHHHHHHHHHHhccCcHHHHHHHHHHhHH---hcCCCc--CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC
Q 011587 320 -AVTFTSLFAACCHAGLVEEGLHLFDNMKS---KWGVEP--HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP 386 (482)
Q Consensus 320 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p 386 (482)
..+++.+...|...|++++|...+++..+ ..+..+ ...++..+...|...|++++|.+.+++. +...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45788888999999999999999999873 211111 1258888999999999999999998876 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHhHH-HHHHHHHHhcC
Q 011587 387 -DAILWRSLLSACNVHGDVALG-EKVGKILLQLQ 418 (482)
Q Consensus 387 -~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~ 418 (482)
-..+|..+...|...|++++| ...++++....
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 266788889999999999999 78788877643
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=7.2e-06 Score=73.48 Aligned_cols=196 Identities=12% Similarity=-0.032 Sum_probs=137.7
Q ss_pred CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchh---HHHHHHHHHHcCCChHHHHHHHHhccCC-----
Q 011587 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVF---IGTALVDMYSKCGCLDNALLIFSRMREK----- 283 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 283 (482)
...|+..++..+...+.-.-+ .+..... ..+.. .+...+..+...|++++|..++++..+.
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~ 109 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPII---------HFYEVLI--YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP 109 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCTH---------HHHHTTT--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCHHHHHHHHHHhCcCHH---------HHhCCCC--CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCCh
Confidence 346777777777766643321 1111111 12222 2333477889999999999999987642
Q ss_pred C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----
Q 011587 284 N----VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK-PN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---- 350 (482)
Q Consensus 284 ~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---- 350 (482)
+ ...+..+...+...|++++|+..|++..+.... ++ ..+++.+...|...|++++|...|+++.+..
T Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 189 (293)
T 3u3w_A 110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 1 123345667777888999999999999874322 22 2368889999999999999999999988521
Q ss_pred CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCC-HHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcC
Q 011587 351 GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPD-AILWRSLLSACNVHG-DVALGEKVGKILLQLQ 418 (482)
Q Consensus 351 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 418 (482)
+..+ ...++..+...|.+.|++++|.+.+++. +..+. ..+|..+..++.+.| ++++|...+++++...
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 1112 2347888999999999999999988766 22232 678888999999999 4699999999988643
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=7.3e-06 Score=73.45 Aligned_cols=210 Identities=8% Similarity=-0.020 Sum_probs=141.6
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL---TWTAMATGMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g 315 (482)
.+..+..... .|+..+...+...+.-.- ..++..-...+.. .+...+..+...|++++|..++++..+..
T Consensus 33 ~~s~~e~g~~--~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~ 105 (293)
T 3u3w_A 33 EVSRIESGAV--YPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE 105 (293)
T ss_dssp HHHHHHTTSC--CCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCC--CCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc
Confidence 3444444444 346665555555544221 1233332223232 33344677889999999999999988743
Q ss_pred C-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC----
Q 011587 316 V-KPNA----VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI---- 382 (482)
Q Consensus 316 ~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---- 382 (482)
. .|+. ..+..+...+...+++++|...++++.+...-.++ ..+++.+...|...|++++|...|++.
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 106 EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2232 23345667777888999999999999873111222 347899999999999999999888776
Q ss_pred -CC---CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC-chHHHHHHHHh
Q 011587 383 -PI---KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER-WPDVESVRKQM 456 (482)
Q Consensus 383 -~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m 456 (482)
.. .+ ...++..+...|.+.|++++|...++++++..++.+ ....-..+|..+..+|.+.|+ +++|...+++.
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 12 234778899999999999999999999988654210 000125688899999999995 69999888776
Q ss_pred H
Q 011587 457 K 457 (482)
Q Consensus 457 ~ 457 (482)
.
T Consensus 264 l 264 (293)
T 3u3w_A 264 S 264 (293)
T ss_dssp H
T ss_pred H
Confidence 5
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=5.6e-06 Score=79.84 Aligned_cols=358 Identities=8% Similarity=-0.047 Sum_probs=206.3
Q ss_pred ChHHHHHHhhcCCCCChhhHHHHhcCCCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHH
Q 011587 58 STKIVHFVFTHFDPPNLFLFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTK 137 (482)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 137 (482)
+++.|+.+|+.... ..-.|+++.+.++|++.+.. .| +...|...++...+.+.. .+....+|+..+.
T Consensus 10 ~i~~aR~vyer~l~--------~~P~~~~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~--~~~i~~~fe~al~ 76 (493)
T 2uy1_A 10 ELSSPSAIMEHARR--------LYMSKDYRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQK--KFKLYEVYEFTLG 76 (493)
T ss_dssp --CCHHHHHHHHHH--------HHHTTCHHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC------CTHHHHHHHHH
T ss_pred chHHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 36666666665420 11118888899999888873 36 888888888877776622 4667788888776
Q ss_pred h-CCC-CchhHHHHHHHHHHh----CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccc--------------hH
Q 011587 138 R-GFM-FNVLVATTLIHFYAS----NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDC--------------AF 197 (482)
Q Consensus 138 ~-~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~--------------~~ 197 (482)
. |.. .+...|...+..+.. .++++.+..+|++...-....+..+-..|...-. ..+ +.
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~--~~~~~~~~~~~~~~~~~y~ 154 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL--ELNKITGKKIVGDTLPIFQ 154 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHH
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH--HhccccHHHHHHHHhHHHH
Confidence 4 433 356777777776543 3567788888888765222223333333333000 111 12
Q ss_pred HHHHHHHHhhhccCCCC-cCHHHHHHHHHHhhcc--Cc-----hHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC
Q 011587 198 NALVLFRDMLVDVSGVK-PTDTTMVCVLSVSSQL--GL-----LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC 269 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~-p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~ 269 (482)
.|..+++.+. . ..+ .+...|...+..-... +- .+.+..+|++++... +.....|...+..+.+.|+
T Consensus 155 ~ar~~y~~~~--~-~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 155 SSFQRYQQIQ--P-LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHH--H-HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--H-HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCC
Confidence 2333343332 1 000 1223444444332221 11 234567888887765 5567788888888888888
Q ss_pred hHHHHHHHHhccC-CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHhccCc
Q 011587 270 LDNALLIFSRMRE-KNVL-TWTAMATGMAIHGKGNEAIRLLDSMRDC---------GVKP---NAVTFTSLFAACCHAGL 335 (482)
Q Consensus 270 ~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~p---~~~~~~~ll~~~~~~~~ 335 (482)
.+.|..+|++... |... .|. .|+...+.++. ++.+.+. +..+ ....|...+....+.++
T Consensus 229 ~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 8888888887653 3222 221 23322222222 2222221 0011 12345555555556778
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc-CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA-GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
.+.|..+|+++ +. . ..+...|......-... ++.+.|..+|+.. ...-+...+...+......|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999988 42 1 23444454333222223 3688999998876 222234556667777788899999999998
Q ss_pred HHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 413 ILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
++ . .....|...+..-...|+.+.+..++++..+
T Consensus 379 r~----~--------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RL----E--------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HS----C--------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HH----H--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 86 2 3466788888877888999999888887763
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.65 E-value=6.8e-07 Score=80.88 Aligned_cols=223 Identities=11% Similarity=-0.072 Sum_probs=153.8
Q ss_pred CCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHH
Q 011587 157 NKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFG 236 (482)
Q Consensus 157 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 236 (482)
.|++++|.+++++..+..... .+.. .++++.|...|... ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~------~~~~-----~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS------FMKW-----KPDYDSAASEYAKA-----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC------SSSC-----SCCHHHHHHHHHHH-----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc------ccCC-----CCCHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 466777777777665321110 0111 46677777777765 3567788999999
Q ss_pred HHHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-------C--CHHHHHHHHHHHHhcCChHHH
Q 011587 237 ACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------K--NVLTWTAMATGMAIHGKGNEA 304 (482)
Q Consensus 237 ~~~~~~~~~~~~~---p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a 304 (482)
...+.++.+.... +.....+++.+...|.+.|++++|+..|++..+ + -..+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 9999988764310 011245788899999999999999999987653 1 13577888888988 999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCcC-HHHHHHHHHHHhccCCHHHH
Q 011587 305 IRLLDSMRDC----GVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW---GVEPH-IKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 305 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A 375 (482)
+..|++..+. |-.+ ...++..+...|.+.|++++|...|++..+.. +..+. ...+..+...+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988653 1111 14578888899999999999999999988731 11111 23666777788888999999
Q ss_pred HHHHHcCCCCCC------HHHHHHHHHHHHhcCCHhHHHH
Q 011587 376 YNFIMGIPIKPD------AILWRSLLSACNVHGDVALGEK 409 (482)
Q Consensus 376 ~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~ 409 (482)
...|++.-..|+ ......++.++ ..|+.+.+..
T Consensus 215 ~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999987533332 12344555555 5677666555
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=1.5e-06 Score=73.70 Aligned_cols=128 Identities=7% Similarity=-0.062 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
..+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+. .+.+...+..+...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 345667778889999999999999874 568889999999999999999999999999984 35567889999999
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-----------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-----------------DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|...|++++|.+.|++. ...| ....+..+..++...|++++|...++++.+..|
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 99999999999999877 2222 236788899999999999999999999999988
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=5.7e-07 Score=72.80 Aligned_cols=127 Identities=6% Similarity=-0.019 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666777777777777777663 2335666777777777777777777777766 2233 566777788888
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHH--HHHHhCCCchHHHHHHHHhH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALS--NIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~ 457 (482)
...|++++|...++++.+..| .+...+..+. ..+.+.|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP--------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888888887 5555554333 34777888888888877654
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=8.8e-08 Score=85.46 Aligned_cols=92 Identities=15% Similarity=-0.113 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATG 294 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 294 (482)
..+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344444444445555555555555544443 33444444444444444444444444444432 133344444444
Q ss_pred HHhcCChHHHHHHHHHHH
Q 011587 295 MAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~ 312 (482)
|...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 444444444444444443
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=1.9e-07 Score=74.28 Aligned_cols=94 Identities=7% Similarity=-0.050 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHH
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFV 434 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (482)
..+..+...+.+.|++++|...|++. .+.| +...|..+..+|...|++++|...|+++++..| .++..|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--------~~~~~~~ 108 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--------NDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------SCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------CCcHHHH
Confidence 34445555555556666666555555 2233 455555555555666666666666666666665 4555555
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHh
Q 011587 435 ALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
.+..+|.+.|++++|...|++..+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666655554
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=5.2e-07 Score=69.46 Aligned_cols=108 Identities=9% Similarity=-0.006 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+......|.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45666677788888888888888888773 3456778888888888888888888888876 3344 677888888888
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 399 NVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
...|++++|.+.|+++++..| .+...+..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P--------~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDP--------SNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCc--------CCHHHHHHHHH
Confidence 899999999999999999888 67666665554
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=1.2e-06 Score=66.84 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC-CCCHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI-KPDAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 397 (482)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|..+++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666677777777777777777663 2345566677777777777777777777766 22 2356677777778
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
+...|++++|...++++.+..| .+...+..+..++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP--------NNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHhc
Confidence 8888888888888888888877 5666666666665543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=9.8e-07 Score=67.91 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 397 (482)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666666777777777777777663 2335666777777777777777777777665 2233 46677777778
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCc
Q 011587 398 CNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERW 446 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (482)
+...|++++|...++++.+..| .+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP--------DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877 5677777777777777765
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=7.5e-06 Score=73.99 Aligned_cols=222 Identities=11% Similarity=0.034 Sum_probs=153.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHHHHHHHHHHhc-C-ChH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTWTAMATGMAIH-G-KGN 302 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~ 302 (482)
+.+..++|.++++.++... +.+..+|+.--..+...| ++++++++++.+.. .+..+|+.-...+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3344567888888888887 778888888888888888 58999999988874 3567777776666665 6 788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHH--------HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC---
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVE--------EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH--- 371 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 371 (482)
+++++++++.+...+ |...++.-...+.+.+..+ ++.+.++++.+. -+-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccccc
Confidence 999999998876544 6666665555555555555 888888888884 34577788888877877776
Q ss_pred ----HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCH--------------------hHHHHHHHHHHhcCCCccccc
Q 011587 372 ----LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDV--------------------ALGEKVGKILLQLQPEVTFVD 425 (482)
Q Consensus 372 ----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~~~~~~~~ 425 (482)
++++++.+++. ...| |...|+-+-..+.+.|.. ........++...... + ..
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP-E-DT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC-S-SC
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc-c-cc
Confidence 67888888776 3345 778887766666665543 2222222222222100 0 00
Q ss_pred ccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 426 VACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
-.+++.....++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 126778888999999999999999999999863
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=1.1e-06 Score=68.06 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...+...|++++|...+++..+ ..+.+...+..+...|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566666666677777777777777665 22335666677777777777777777777665 2223 5667777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.+...|++++|...++++.+..| .+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS--------SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG--------GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHHhc
Confidence 88888888888888888888877 56667777777766654
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=2e-07 Score=74.12 Aligned_cols=98 Identities=11% Similarity=-0.023 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 397 (482)
...+..+...+.+.|++++|...|++.... -+.+...|..+..+|...|++++|++.|++. .+.| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345555666677777777777777777662 2345666667777777777777777777766 3333 45566666777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC
Q 011587 398 CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...|++++|...|+++++..|
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHCc
Confidence 7777777777777777777666
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=6.9e-07 Score=68.77 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
...+......|.+.|++++|++.|++. .+.| +...|..+..++.+.|++++|...++++++.+| .+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------KFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--------hhhHHH
Confidence 456778889999999999999999987 4445 788999999999999999999999999999999 789999
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 434 VALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
..+..++...|++++|...|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999987643
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=7.5e-07 Score=74.87 Aligned_cols=134 Identities=11% Similarity=-0.004 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCc--
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRD----CGVKP-NAVTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEP-- 354 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-- 354 (482)
..++..+...+...|++++|...+++..+ .+..| ....+..+...+...|++++|...+++..+. .+-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34445555555555555555555554433 11111 2234444555555566666666555555442 11011
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPD----AILWRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
....+..+...+...|++++|...+++. ....+ ..++..+...+...|++++|...++++.+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1234455555566666666665555543 00111 2234555666666777777777776666543
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=5.2e-06 Score=72.51 Aligned_cols=184 Identities=9% Similarity=-0.109 Sum_probs=139.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHH-------HHHHHcCCChHHHHHHHHhccC--C-------C--------
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTAL-------VDMYSKCGCLDNALLIFSRMRE--K-------N-------- 284 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------~-------- 284 (482)
..++...|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+.+-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5789999999999999988 7778888877 5666666666666666665543 1 1
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC--
Q 011587 285 -------VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH-- 355 (482)
Q Consensus 285 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 355 (482)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 1234456677889999999999999988754 44435555666788999999999999866551 1 221
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC--CCC-CC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI--PIK-PD--AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+..+..++...|++++|++.|++. +-. |. .........++.+.|+.++|..+|+++...+|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 346778889999999999999999988 322 43 33555667788999999999999999999988
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=4e-06 Score=67.67 Aligned_cols=127 Identities=12% Similarity=-0.030 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATG 294 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 294 (482)
..+..+...+...|+++.|...+++..+.. +.+..++..+...+...|++++|...+++..+ .+..+|..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566666777777777777777777765 55666777777777777777777777776653 345566677777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTF--TSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
+...|++++|...|++..+.... +...+ ......+.+.|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77777777777777777664322 33333 2233335566677777766665543
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=1.3e-06 Score=77.73 Aligned_cols=162 Identities=9% Similarity=-0.126 Sum_probs=87.3
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAA 329 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 329 (482)
+...+..+...+.+.|++++|+..|++..+ | +...|..+..+|.+.|++++|...+++..+... -+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344555566666666666666666666542 2 455666666666666666666666666655432 244555566666
Q ss_pred HhccCcHHHHHHHHHHhHHhc-----------------------------CCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 330 CCHAGLVEEGLHLFDNMKSKW-----------------------------GVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 330 ~~~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
+...|++++|...|++..+.. ..+.+......+ ..+ ..|+.++|.+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~ 159 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQ 159 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHH
Confidence 666666666666666655421 011111111111 111 2456666766666
Q ss_pred cC-CCCCCHHHH-HHHHHHHHhc-CCHhHHHHHHHHHHhc
Q 011587 381 GI-PIKPDAILW-RSLLSACNVH-GDVALGEKVGKILLQL 417 (482)
Q Consensus 381 ~~-~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 417 (482)
+. ...|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 160 RNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55 455654333 2232233333 5677777788776653
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=8.6e-05 Score=67.09 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=162.9
Q ss_pred ccchHHHHHHHHHhhhccCCCCc-CHHHHHHHHHHhhccC-chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcC-C-
Q 011587 193 KDCAFNALVLFRDMLVDVSGVKP-TDTTMVCVLSVSSQLG-LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKC-G- 268 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~-g- 268 (482)
.+..++|+++++.+. .+.| +...|+.--..+...+ .++++...++.++... +.+..+|+.-...+.+. +
T Consensus 67 ~e~se~AL~lt~~~L----~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n---PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 67 EEKSERALELTEIIV----RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN---LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHHHH----HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCC
Confidence 556678999999987 3445 4456777777777777 5999999999999888 77888998888888776 7
Q ss_pred ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--
Q 011587 269 CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGN--------EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-- 335 (482)
Q Consensus 269 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-- 335 (482)
++++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 89999999999986 36677776665555555565 999999999987654 78888888888777775
Q ss_pred -----HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH--------------------HHHHHHHHcC-CC-----
Q 011587 336 -----VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL--------------------EEAYNFIMGI-PI----- 384 (482)
Q Consensus 336 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~----- 384 (482)
++++.+.++++... .+-|...|+-+-..+.+.|+. ....++..++ +.
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 68899999888873 455777887776667666653 3344444444 21
Q ss_pred --CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hcCC
Q 011587 385 --KPDAILWRSLLSACNVHGDVALGEKVGKILL-QLQP 419 (482)
Q Consensus 385 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~ 419 (482)
.+....+..++..|...|+.++|.++++.+. +.+|
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 3578888999999999999999999999987 4455
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=1e-06 Score=80.71 Aligned_cols=159 Identities=13% Similarity=-0.010 Sum_probs=104.1
Q ss_pred CChHHHHHHHHhccC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 011587 268 GCLDNALLIFSRMRE--K-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFD 344 (482)
Q Consensus 268 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 344 (482)
+++++|...|+...+ | +...|..+...|.+.|++++|+..|++..+...... .+ ..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--SF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--CC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc--cC-----------ChHHHHHH--
Confidence 344455554444432 2 445677777777777888888888877766432211 00 00111100
Q ss_pred HhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcc
Q 011587 345 NMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVT 422 (482)
Q Consensus 345 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 422 (482)
. +.....|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++..|
T Consensus 192 --~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--- 261 (336)
T 1p5q_A 192 --Q-----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--- 261 (336)
T ss_dssp --H-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---
T ss_pred --H-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---
Confidence 0 011356777777888888888888888776 3334 677788888888888888888888888888888
Q ss_pred cccccCCchhHHHHHHHHHhCCCchHHH-HHHHHh
Q 011587 423 FVDVACTSEDFVALSNIYASAERWPDVE-SVRKQM 456 (482)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m 456 (482)
.+...+..+..++.+.|++++|. .+++.|
T Consensus 262 -----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 262 -----NNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888873 344544
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=3.8e-06 Score=63.90 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
.+..+...+...|++++|.++|+++.+ .+..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 344444444444444444444444331 133344444444444444555544444444432 1233444444444445
Q ss_pred cCcHHHHHHHHHHhHH
Q 011587 333 AGLVEEGLHLFDNMKS 348 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~ 348 (482)
.|++++|...++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555554444
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=2.1e-06 Score=72.12 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=88.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---------CCHHHHHHHHHHHHhcC
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---------KNVLTWTAMATGMAIHG 299 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~ 299 (482)
..|++++|.++++.+.. . |.....++..+...+...|++++|...+++..+ ....++..+...|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT-S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC-C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35566666664433322 1 134555666666666666777666666666543 12345666667777777
Q ss_pred ChHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhcc
Q 011587 300 KGNEAIRLLDSMRDC----GVKP--NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRA 369 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~ 369 (482)
++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 777777777765442 2111 2344666667777778888888777776642111111 23456677777788
Q ss_pred CCHHHHHHHHHcC
Q 011587 370 GHLEEAYNFIMGI 382 (482)
Q Consensus 370 g~~~~A~~~~~~~ 382 (482)
|++++|.+.+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 8888887777653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=7.6e-07 Score=73.14 Aligned_cols=122 Identities=10% Similarity=0.081 Sum_probs=89.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH-HhccCCH-
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL-LGRAGHL- 372 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~- 372 (482)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+. .+.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677888888888877654 336677888888888888888888888888873 23456677777777 7778887
Q ss_pred -HHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 373 -EEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 373 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++|...+++. ...| +...+..+...+...|++++|...++++++..|
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888877 3334 567777788888888888888888888888877
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=8.1e-06 Score=71.29 Aligned_cols=123 Identities=11% Similarity=-0.047 Sum_probs=67.5
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC-----HHHHHHHHHHHHh
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN-----VLTWTAMATGMAI 297 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~ 297 (482)
....+...|++++|.++|+.+...+ +.+. ....+...+.+.+++++|+..|+...+.. ...+..+..++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~---p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG---SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT---CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC---CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 4455556666666666666555443 2233 44555556666666666666666554321 2245555566666
Q ss_pred cCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 298 HGKGNEAIRLLDSMRDCGVKPN--AVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 298 ~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666666666653322132 223344445555666666666666666653
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=1.2e-06 Score=69.01 Aligned_cols=96 Identities=11% Similarity=-0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|...|++. .+.| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4444555566666667776666666652 2335556666666666666666666666665 2223 4455555666666
Q ss_pred hcCCHhHHHHHHHHHHhcCC
Q 011587 400 VHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~ 419 (482)
..|++++|...|+++++..|
T Consensus 98 ~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 66666666666666666655
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=3.1e-06 Score=67.18 Aligned_cols=98 Identities=8% Similarity=-0.065 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSA 397 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 397 (482)
...+..+...+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|++.|++. .+.| +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 446667778888999999999999999883 3456788888999999999999999999888 4445 56788888899
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC
Q 011587 398 CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
|...|++++|...|+++++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999887
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=2.2e-07 Score=78.03 Aligned_cols=171 Identities=10% Similarity=-0.034 Sum_probs=94.9
Q ss_pred HHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
..+......|+++++.+.|+...+ .....+..+...+...|++++|...|++..+.... +. .+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~-~~~~~--------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TE-EWDDQ--------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CT-TCCCH---------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-cc-ccchh---------
Confidence 344445555666666666654332 13445666677777777888888877777664211 11 00000
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKI 413 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 413 (482)
.+..-.. ......+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|...|++
T Consensus 78 ------~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 78 ------ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp ------HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000000 001356667777777888888888877766 3233 667777788888888888888888888
Q ss_pred HHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHH-HHHHHhHh
Q 011587 414 LLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVE-SVRKQMKV 458 (482)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 458 (482)
+++..| .+...+..+..++...++.+++. ..+..|-.
T Consensus 148 al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNP--------NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHST--------TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888 67778888888887777777766 44555443
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.41 E-value=2.3e-06 Score=63.76 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccC--Cchh
Q 011587 357 KHYSCIVDLLGRAGHLEEAYNFIMGI-PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVAC--TSED 432 (482)
Q Consensus 357 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~ 432 (482)
..+..+...+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..+ . +...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~ 78 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--------DEYNKDV 78 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--------CTTCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--------ccchHHH
Confidence 34555566666666777766666655 222 2556666677777777777777777777777766 4 6667
Q ss_pred HHHHHHHHHhC-CCchHHHHHHHHhHhcCC
Q 011587 433 FVALSNIYASA-ERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 433 ~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~ 461 (482)
+..+..++.+. |++++|.+.+++......
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 77777777777 777777777777665443
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.40 E-value=1.8e-06 Score=68.56 Aligned_cols=92 Identities=16% Similarity=-0.074 Sum_probs=42.5
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGM 295 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 295 (482)
.+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..|++..+ .+...|..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444444444555555555555544444 33444444444444444444444444444431 1333444444444
Q ss_pred HhcCChHHHHHHHHHHHh
Q 011587 296 AIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~ 313 (482)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444433
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.40 E-value=5.7e-06 Score=67.79 Aligned_cols=117 Identities=11% Similarity=0.039 Sum_probs=68.4
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHH-HHhcCCh--
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATG-MAIHGKG-- 301 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~~~~-- 301 (482)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+ .+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34556666666666666655 45556666666666666666666666666553 244555555555 5566666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 302 NEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 302 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
++|...+++..+... -+...+..+...+...|++++|...|+++.+
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666666665432 2345555566666666666666666666665
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=5.7e-06 Score=63.84 Aligned_cols=93 Identities=9% Similarity=-0.021 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
..+..+...+...|++++|...|++..+ .+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3344444444444444444444444332 133344444444444444444444444444432 113344444444444
Q ss_pred ccCcHHHHHHHHHHhHH
Q 011587 332 HAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~ 348 (482)
+.|++++|...|++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554444
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=8.5e-06 Score=61.17 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSAC 398 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 398 (482)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555566666666666666666652 2334556666666666666666666666655 2223 456666667777
Q ss_pred HhcCCHhHHHHHHHHHHhcCC
Q 011587 399 NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 399 ~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...|++++|...++++.+..|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 777777777777777777766
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=5.3e-06 Score=63.68 Aligned_cols=112 Identities=9% Similarity=-0.033 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHA 333 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 333 (482)
+..+...+...|++++|...|++..+ .+...+..+..++...|++++|...+++..+.. +.+...+..+...+...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 33444444444444444444444331 133344444444444555555555555444432 11334444444555555
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
|++++|...+++..+. .+.+...+..+...+.+.|+
T Consensus 94 ~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 5555555555555442 12234444444444444443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.2e-06 Score=64.23 Aligned_cols=95 Identities=9% Similarity=-0.074 Sum_probs=53.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 322 TFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 322 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
.+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4444555555666666666666666552 2334555555556666666666666655554 2223 3455555555566
Q ss_pred hcCCHhHHHHHHHHHHhcC
Q 011587 400 VHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~ 418 (482)
..|++++|...++++++..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 6666666666666665555
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.8e-06 Score=63.86 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+. .+.+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4567788889999999999999999998864 336788999999999999999999999999983 3456788999999
Q ss_pred HHhccCCHHHHHHHHHcC
Q 011587 365 LLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~ 382 (482)
++...|++++|.+.|++.
T Consensus 81 ~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 81 AQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 999999999999999887
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.32 E-value=5.8e-06 Score=75.67 Aligned_cols=140 Identities=12% Similarity=-0.034 Sum_probs=90.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC----------------HHHHHHH
Q 011587 230 LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN----------------VLTWTAM 291 (482)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l 291 (482)
.++++.|...++...+.. +.+...+..+...|.+.|++++|+..|++..+ |+ ..+|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 344555655555544443 44677889999999999999999999998874 32 3566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
..+|.+.|++++|+..+++..+... .+...+..+..+|...|++++|...|+++.+. .+.+...+..+...+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 6666666666666666666665432 24555666666666666666666666666652 23344555555555555555
Q ss_pred HHHH
Q 011587 372 LEEA 375 (482)
Q Consensus 372 ~~~A 375 (482)
.++|
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=9.2e-06 Score=63.18 Aligned_cols=99 Identities=7% Similarity=-0.172 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++. .+.| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5566667777777777777777777777763 2345666777777777777777777777666 2233 5666777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...|++++|...|+++++..|
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHCh
Confidence 77777777777777777777665
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.30 E-value=4.2e-06 Score=67.70 Aligned_cols=99 Identities=13% Similarity=-0.001 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567888888999999999999999999984 3447888999999999999999999999988 4445 6888999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCC
Q 011587 397 ACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 397 ~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...|++++|...|+++++..|
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=1.4e-06 Score=73.14 Aligned_cols=150 Identities=12% Similarity=0.005 Sum_probs=90.2
Q ss_pred HHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCH------------
Q 011587 221 VCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNV------------ 285 (482)
Q Consensus 221 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------------ 285 (482)
+..+......|+++.+.+.++.-.... ......+..+...+...|++++|...|++..+ .+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp --------------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 344555666777777777776544333 33556778889999999999999999998864 122
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHH
Q 011587 286 ----LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSC 361 (482)
Q Consensus 286 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (482)
.+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+. .+-+...+..
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 161 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 566667777777777777777777776653 235566666667777777777777777777662 2334555555
Q ss_pred HHHHHhccCCHHHHH
Q 011587 362 IVDLLGRAGHLEEAY 376 (482)
Q Consensus 362 li~~~~~~g~~~~A~ 376 (482)
+...+...++.+++.
T Consensus 162 l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 162 YELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555444
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=4.3e-06 Score=65.76 Aligned_cols=104 Identities=15% Similarity=0.065 Sum_probs=85.1
Q ss_pred HHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 011587 276 IFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGV 352 (482)
Q Consensus 276 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 352 (482)
.|+++.+. +...+..+...+.+.|++++|...|++...... .+...+..+..++...|++++|...|++..+. .
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM--D 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--C
Confidence 44555542 445667778889999999999999999988643 37778888999999999999999999999983 3
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
+.+...+..+..+|...|++++|.+.|++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456778888999999999999999999887
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.27 E-value=1e-05 Score=60.67 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..| .+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~ 74 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--------DWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--------ccHHH
Confidence 3457778888999999999999999987 3334 788888899999999999999999999999998 78889
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 433 FVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
+..+..++.+.|++++|...+++..+.+
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987554
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.2e-05 Score=63.28 Aligned_cols=111 Identities=11% Similarity=-0.079 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHH
Q 011587 319 NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWR 392 (482)
Q Consensus 319 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 392 (482)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4566667777777788888888888877762 344 566777777777788888887777766 3334 566777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY 440 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (482)
.+..++...|++++|...++++++..| .+...+..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEP--------KNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHH
Confidence 777777778888888888888877777 4555555554443
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.27 E-value=3.3e-06 Score=64.38 Aligned_cols=92 Identities=14% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVAL 436 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 436 (482)
+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++..| .+...+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------~~~~~~~~l 91 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Confidence 344556667777777777777766 3334 566677777777777777777777777777777 567777777
Q ss_pred HHHHHhCCCchHHHHHHHHhHh
Q 011587 437 SNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..++.+.|++++|...+++..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777664
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=3.5e-06 Score=64.87 Aligned_cols=99 Identities=6% Similarity=-0.015 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC----
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT---- 429 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 429 (482)
...+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++..|+.. ++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-----ADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----hhhHHH
Confidence 446777888999999999999999887 4455 678899999999999999999999999999877210 11
Q ss_pred chhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 430 SEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
..+|..+..++...|++++|++.+++....
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 246778888999999999999999987753
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=1e-05 Score=65.30 Aligned_cols=96 Identities=11% Similarity=-0.059 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHH
Q 011587 284 NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIV 363 (482)
Q Consensus 284 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 363 (482)
+...|..+...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...+++..+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456788899999999999999999999988643 37788899999999999999999999999984 345688999999
Q ss_pred HHHhccCCHHHHHHHHHcC
Q 011587 364 DLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 364 ~~~~~~g~~~~A~~~~~~~ 382 (482)
.+|...|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999999987
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=2e-05 Score=60.47 Aligned_cols=92 Identities=4% Similarity=-0.056 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--CC--------HHHH
Q 011587 219 TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--KN--------VLTW 288 (482)
Q Consensus 219 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~ 288 (482)
.+..+.+.+.+.|++++|...|+++++.. |.+...|..+..+|.+.|++++|++.|++..+ |+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45566667777777777777777777665 55666677777777777777777777766653 11 1245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555666666666666666666554
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.23 E-value=0.00045 Score=62.07 Aligned_cols=180 Identities=13% Similarity=0.021 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC--ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCC-hHHHHH
Q 011587 233 LEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCG--CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGK-GNEAIR 306 (482)
Q Consensus 233 ~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~ 306 (482)
++++..+++.+.... |.+..+|+.-..++.+.| ++++++.+++++.+ .|..+|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 566777777777776 667778877777777777 47888888888874 466777777666677777 578888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc---
Q 011587 307 LLDSMRDCGVKPNAVTFTSLFAACCHA--------------GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA--- 369 (482)
Q Consensus 307 ~~~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 369 (482)
.++++.+..+. |...|+.....+.+. +.++++.+.+...... .+-|...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc
Confidence 88888876544 666666555544443 4577888888888873 355666776555455444
Q ss_pred --------CCHHHHHHHHHcC-CCCCCHHHHHHHHHH-----HHhcCCHhHHHHHHHHHHhcCC
Q 011587 370 --------GHLEEAYNFIMGI-PIKPDAILWRSLLSA-----CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 370 --------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.++++++.++++ .+.|+. .|+.+..+ ....|..+++...+.++++.+|
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 3467888888877 555653 34322222 2246778899999999999999
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.3e-05 Score=60.77 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (482)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 36678889999999999999999999999886 455 677888889999999999999999999884 3446788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLS 396 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 396 (482)
+..+..+|...|++++|.+.|++. ...| +...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 889999999999999999999987 4445 4444444433
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.9e-05 Score=70.70 Aligned_cols=191 Identities=8% Similarity=-0.114 Sum_probs=106.3
Q ss_pred HhhccCchHHHHHHHHHHHHhCCCCCC--------------chhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCH-
Q 011587 226 VSSQLGLLEFGACVHGYMEKTFYMPEN--------------DVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNV- 285 (482)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~p~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~- 285 (482)
.+.+.|++++|.+.+..+++....... ....+..++..|...|++++|.+++..+.+ ++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566667777766666654321000 001355667777777777777777766543 111
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC----
Q 011587 286 ---LTWTAMATGMAIHGKGNEAIRLLDSMRD----CGVKPN-AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE---- 353 (482)
Q Consensus 286 ---~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---- 353 (482)
.+.+.+-..+...|++++|..+++.... .+..+. ..++..+...|...|++++|..+++++.....-.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1233333344455667777777666532 222222 3455666677777777777777777665431111
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
.....+..++..|...|++++|..++++. +..+. ...+..+...+...|++++|...|.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11346666677777777777777766554 11111 23445555556667777777776666654
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.19 E-value=1.5e-05 Score=62.00 Aligned_cols=97 Identities=11% Similarity=-0.065 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 283 KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 283 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
.+...|..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..+. .+.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 4677889999999999999999999999988643 36788889999999999999999999999984 34567889999
Q ss_pred HHHHhccCCHHHHHHHHHcC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~ 382 (482)
..+|...|++++|...|++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999887
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.00042 Score=62.28 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=156.9
Q ss_pred ccCch-HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC----------hHHHHHHHHhccC---CCHHHHHHHHHH
Q 011587 229 QLGLL-EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC----------LDNALLIFSRMRE---KNVLTWTAMATG 294 (482)
Q Consensus 229 ~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~ 294 (482)
+.|.+ ++|..+.+.++... |.+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44554 47889999998887 6677777766555544443 6788888888874 477888887777
Q ss_pred HHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc--
Q 011587 295 MAIHGK--GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA-- 369 (482)
Q Consensus 295 ~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 369 (482)
+.+.++ +++++.+++++.+.... |...|+.-...+...|. .+++.+.++.+.+. -+-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 777774 89999999999987644 77777776666777787 58999999999984 345677777766666554
Q ss_pred ------------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc-----------CCHhHHHHHHHHHHhcCCCcccc
Q 011587 370 ------------GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVH-----------GDVALGEKVGKILLQLQPEVTFV 424 (482)
Q Consensus 370 ------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ 424 (482)
+.++++++.+.+. ...| |...|+-+-..+.+. +.++++.+.++++++..|
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p----- 269 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP----- 269 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc-----
Confidence 4577888888877 3345 778887655555544 457899999999999999
Q ss_pred cccCCchhHHHHHH---HHHhCCCchHHHHHHHHhHhc
Q 011587 425 DVACTSEDFVALSN---IYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 425 ~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~ 459 (482)
.+..++..++. +....|..+++...+.++.+.
T Consensus 270 ---d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 270 ---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp ---TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45444444332 223467788888888888743
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1.1e-05 Score=59.90 Aligned_cols=98 Identities=14% Similarity=0.029 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC---CHHHHHHHH
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP---DAILWRSLL 395 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 395 (482)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345555666677777777777777777763 2345666777777777777888887777766 3233 466777777
Q ss_pred HHHHhc-CCHhHHHHHHHHHHhcCC
Q 011587 396 SACNVH-GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 396 ~~~~~~-g~~~~a~~~~~~~~~~~~ 419 (482)
..+... |++++|.+.++++....|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 778888 888888888888877776
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=2.4e-05 Score=74.32 Aligned_cols=196 Identities=6% Similarity=-0.083 Sum_probs=139.8
Q ss_pred HHHHHcCCChHHHHHHHHhccCC-----C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC
Q 011587 261 VDMYSKCGCLDNALLIFSRMREK-----N---------------VLTWTAMATGMAIHGKGNEAIRLLDSMRDC-GVKPN 319 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~ 319 (482)
...+.+.|++++|++.|.++.+. + ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999987631 0 125778899999999999999999987652 11122
Q ss_pred H----HHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CC
Q 011587 320 A----VTFTSLFAACCHAGLVEEGLHLFDNMKSK---WGVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PI 384 (482)
Q Consensus 320 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~ 384 (482)
. .+.+.+-..+...|+.+.|..++...... .+..+ -..++..+...|...|++++|..++++. .-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 12333334455678999999998887652 12222 2567888999999999999999988766 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 385 KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 385 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++ ...++..++..|...|++++|...+++.....+....+. ..-...+..+...+...|++++|...+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT-QTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 345788889999999999999999999887543210000 0013456677788889999999998776664
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=5.4e-06 Score=79.78 Aligned_cols=119 Identities=6% Similarity=-0.030 Sum_probs=90.3
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDV 404 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 404 (482)
...+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888873 3445778888888888889999998888877 4445 677888888889999999
Q ss_pred hHHHHHHHHHHhcCCCcccccccCCchhHHHHHHH--HHhCCCchHHHHHHHH
Q 011587 405 ALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNI--YASAERWPDVESVRKQ 455 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 455 (482)
++|.+.++++++..| .+...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKP--------HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHST--------TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999888 566677777666 8888999999988873
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=3.2e-05 Score=59.16 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--C-C-------HHH
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE--K-N-------VLT 287 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~ 287 (482)
..+..+...+...|+++.|...++++.+.. +.+...+..+...|...|++++|...+++..+ | + ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 345555666666666666666666666655 44555666666666666666666666665542 1 1 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
+..+..++...|++++|...|++..+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555566666666666666655553
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=1.2e-05 Score=61.61 Aligned_cols=95 Identities=8% Similarity=-0.003 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CC----CCC----HHHHHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PI----KPD----AILWRS 393 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 393 (482)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444555555555555555442 1223444445555555555555555555444 11 111 445555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...+...|++++|...++++.+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666666666666666666666544
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=1.9e-05 Score=75.63 Aligned_cols=158 Identities=9% Similarity=-0.025 Sum_probs=93.2
Q ss_pred ChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 011587 269 CLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDN 345 (482)
Q Consensus 269 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 345 (482)
++++|...|+...+ .....|..+...|.+.|++++|+..|++..+.. |+...+ . .+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----H
Confidence 44455544443332 234567777777888888888888888776642 111000 0 00000 0
Q ss_pred hHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCccc
Q 011587 346 MKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTF 423 (482)
Q Consensus 346 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 423 (482)
... .....|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++..|
T Consensus 312 ~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P---- 382 (457)
T 1kt0_A 312 SES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP---- 382 (457)
T ss_dssp HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred HHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----
Confidence 000 11346666777777777777777777766 3333 566677777777777777777777777777777
Q ss_pred ccccCCchhHHHHHHHHHhCCCchHHHH-HHHHh
Q 011587 424 VDVACTSEDFVALSNIYASAERWPDVES-VRKQM 456 (482)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m 456 (482)
.+...+..+..++.+.|+++++.+ +++.|
T Consensus 383 ----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 383 ----QNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776654 34444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=2.2e-05 Score=62.66 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCc-CHHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CHHH
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKW---GVEP-HIKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DAIL 390 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~ 390 (482)
+..+...+...|++++|...+++..+.. +..+ ....+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 3344444444455555555544443310 0000 1234445555555566666665555443 1111 1334
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQ 418 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 418 (482)
+..+...+...|++++|.+.+++..+..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666667777777777777777776643
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=1.9e-05 Score=63.04 Aligned_cols=136 Identities=13% Similarity=-0.000 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC-------CCCC-CH
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI-------PIKP-DA 388 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~ 388 (482)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566667777778888888888777652111111 247788889999999999999988876 1111 14
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 389 ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 389 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..+..+...+...|++++|...++++.+...+.+. ......++..+...+...|++++|...+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc--hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56777888899999999999999999876431100 002245677899999999999999999988764
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=5.8e-05 Score=57.77 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=59.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC----HHHHHHHHHH
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHI---KHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD----AILWRSLLSA 397 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 397 (482)
+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 445556667777777777776663 12222 45566666777777777777777665 22232 4556667777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC
Q 011587 398 CNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 398 ~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+...|++++|...|+++++..|
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 7777888888888888877776
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=2.2e-05 Score=60.17 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=78.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC---ch
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIKPD-A---ILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT---SE 431 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~ 431 (482)
..+...+...|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..| .+ ..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~ 77 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP--------THDKAAG 77 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TSTTHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--------CCcccHH
Confidence 44567788999999999999987 32343 2 4777788899999999999999999999988 45 66
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 432 DFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.+..+..++.+.|++++|...++++.+..
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78899999999999999999999988654
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2e-05 Score=59.98 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHh
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNV 400 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 400 (482)
+..+...+.+.|++++|...|++..+. -+.+...|..+..++...|++++|+..|++. .+.| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556667778888888888887773 3446677777777788888888888888776 4444 56677777777888
Q ss_pred cCCHhHHHHHHHHHHhcCC
Q 011587 401 HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 401 ~g~~~~a~~~~~~~~~~~~ 419 (482)
.|++++|...++++++..|
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 8888888888888877766
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=4.5e-05 Score=73.31 Aligned_cols=118 Identities=11% Similarity=-0.009 Sum_probs=71.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcH
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLV 336 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 336 (482)
+...+.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..+++..+... -+...+..+..+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 33455667777777777776653 3456677777777777777777777777766532 2456666677777777777
Q ss_pred HHHHHHHHHhHHhcCCCcCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 011587 337 EEGLHLFDNMKSKWGVEPHIKHYSCIVDL--LGRAGHLEEAYNFIM 380 (482)
Q Consensus 337 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 380 (482)
++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777776631 2222333334333 666667777776666
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=3.7e-05 Score=60.55 Aligned_cols=91 Identities=12% Similarity=-0.060 Sum_probs=70.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHcC-CCCCC-------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-------C
Q 011587 360 SCIVDLLGRAGHLEEAYNFIMGI-PIKPD-------------AILWRSLLSACNVHGDVALGEKVGKILLQL-------Q 418 (482)
Q Consensus 360 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 418 (482)
......+.+.|++++|+..|++. .+.|+ ...|..+..++.+.|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 34444455555555555555544 22222 338888999999999999999999999999 8
Q ss_pred CCcccccccCCchhH----HHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 419 PEVTFVDVACTSEDF----VALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
| .+...| .....++...|++++|+..|++..+
T Consensus 95 p--------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 Q--------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp S--------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C--------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8 678888 9999999999999999999998763
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=5.4e-05 Score=70.12 Aligned_cols=137 Identities=9% Similarity=-0.082 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 286 LTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 286 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
..+..+...+.+.|++++|+..|++..+.- +... .... .+...+ .-+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHH--HHHHHHHHHHHHHHH
Confidence 456666677777777777777777665420 0000 0000 111111 112245688888899
Q ss_pred HhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 366 LGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
|.+.|++++|++.+++. .+.| +...|..+..+|...|++++|...|+++++..| .+...+..+..++.+.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P--------~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP--------EDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHH
Confidence 99999999999999887 5556 677888899999999999999999999999998 6788888888888888
Q ss_pred CCchHHHH
Q 011587 444 ERWPDVES 451 (482)
Q Consensus 444 g~~~~a~~ 451 (482)
++.+++.+
T Consensus 355 ~~~~~a~k 362 (370)
T 1ihg_A 355 KAQKDKEK 362 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877765
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=3e-05 Score=62.36 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------------CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-
Q 011587 320 AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWG----------------VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI- 382 (482)
Q Consensus 320 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 382 (482)
...+......+.+.|++++|...|.+..+... .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45667777888889999999999998887200 1223457777888888888888888888777
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 383 PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 383 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.| +...|..+..++...|++++|...|+++++..|
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 3344 677888888888888888888888888888887
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=3.2e-05 Score=62.22 Aligned_cols=103 Identities=15% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDC--------GV---------KPNAVTFTSLFAACCHAGLVEEGLHLFDNMK 347 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 347 (482)
...+......+.+.|++++|+..|++.... .. +-+...|..+..+|.+.|++++|...+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888999999999999999998764 10 1134578888899999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHH
Q 011587 348 SKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAI 389 (482)
Q Consensus 348 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 389 (482)
+. -+.+...|..+..+|...|++++|...|++. .+.|+..
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 83 3556889999999999999999999999987 5566543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=2.2e-05 Score=71.81 Aligned_cols=148 Identities=9% Similarity=-0.066 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456777777888889999999999887764 344331 22233333332211 1 126677777
Q ss_pred HHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHH-H
Q 011587 365 LLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIY-A 441 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 441 (482)
+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|...|+++++..| .+...+..+.... .
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p--------~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP--------DDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHH
Confidence 888888888888888776 3334 667777788888888888888888888888777 5666666666553 3
Q ss_pred hCCCchHHHHHHHHhHhcC
Q 011587 442 SAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~~ 460 (482)
..+..+++...++.|....
T Consensus 311 ~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 4456667777777776443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.92 E-value=1.2e-05 Score=60.79 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=56.2
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWG--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
.|++++|...|++..+. + -+.+...+..+...|...|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776662 2 2334556677777777777777777777766 3333 5666777777777788888888
Q ss_pred HHHHHHHhcCC
Q 011587 409 KVGKILLQLQP 419 (482)
Q Consensus 409 ~~~~~~~~~~~ 419 (482)
..++++++..|
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88888777766
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00088 Score=65.65 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=120.1
Q ss_pred HHHHHHHHhccC---CCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--c
Q 011587 271 DNALLIFSRMRE---KNVLTWTAMATGMAIHGK----------GNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG--L 335 (482)
Q Consensus 271 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~ 335 (482)
++|++.++++.+ .+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 455666665553 234455554444444444 77888888888776544 6666766666666777 6
Q ss_pred HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC-CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhc-----------
Q 011587 336 VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG-HLEEAYNFIMGI-PIKP-DAILWRSLLSACNVH----------- 401 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 401 (482)
++++...++++.+. -+-+...|+.-...+.+.| ..+++++.++++ ...| +...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888883 3446777777777777777 788888888887 4455 777787776666553
Q ss_pred ---CCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchH
Q 011587 402 ---GDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPD 448 (482)
Q Consensus 402 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (482)
+.++++.+.+.+++...| .+...|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P--------~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP--------NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS--------SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC--------CCccHHHHHHHHHhcCCCccc
Confidence 567899999999999999 799999999999999888655
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=1.2e-05 Score=60.79 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=70.4
Q ss_pred ccCCHHHHHHHHHcC-CC---CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHh
Q 011587 368 RAGHLEEAYNFIMGI-PI---KP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYAS 442 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (482)
..|++++|+..|++. .. .| +...+..+..+|...|++++|...++++++..| .+...+..+..++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--------NHQALRVFYAMVLYN 73 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHHH
Confidence 457888999999887 54 24 566788899999999999999999999999999 789999999999999
Q ss_pred CCCchHHHHHHHHhHhc
Q 011587 443 AERWPDVESVRKQMKVK 459 (482)
Q Consensus 443 ~g~~~~a~~~~~~m~~~ 459 (482)
.|++++|...+++....
T Consensus 74 ~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=0.00022 Score=68.15 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 285 VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 285 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|+++.+. .+-+...+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 35566666666666666666666666665432 24556666666666666666666666666652 2234445566666
Q ss_pred HHhccCCHHHHH-HHHHcC
Q 011587 365 LLGRAGHLEEAY-NFIMGI 382 (482)
Q Consensus 365 ~~~~~g~~~~A~-~~~~~~ 382 (482)
++.+.++.+++. ..+..|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 666666666553 334444
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.81 E-value=0.00019 Score=66.46 Aligned_cols=118 Identities=4% Similarity=-0.069 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccC-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMRE-------------------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGV 316 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 316 (482)
.+..+...+.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|+..+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345566666677777777776665543 1335566666677777777777777777766532
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHH
Q 011587 317 KPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAY 376 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 376 (482)
-+...+..+..+|...|++++|...|++..+. .+.+...+..+...+...++.+++.
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24556666666777777777777777776663 2234555555555555555555553
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.81 E-value=6.8e-05 Score=68.55 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=82.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMRE--KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
....+..+...+.+.|++++|...|++..+ |+... +...++.+++...+. ...|..+..+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 455678889999999999999999998764 33221 222333444333221 13677788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC-HHHHHHHHHH-HHhcCCHhHH
Q 011587 331 CHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD-AILWRSLLSA-CNVHGDVALG 407 (482)
Q Consensus 331 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~a 407 (482)
.+.|++++|...+++..+. .+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988873 3446778888899999999999999999887 55664 3444444444 2345667778
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
...|+.+....|
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888887776
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.77 E-value=5.2e-05 Score=72.55 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=96.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhcC--CCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCCC-HHHHH
Q 011587 329 ACCHAGLVEEGLHLFDNMKSKWG--VEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKPD-AILWR 392 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 392 (482)
.+...|++++|+.++++..+... +.+ ...+++.|..+|...|++++|+.++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34578999999998888776311 112 3568899999999999999998888765 23453 45789
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh-----cCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 393 SLLSACNVHGDVALGEKVGKILLQ-----LQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 393 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
.|...|...|++++|+.+++++++ .|++ -.....+...+..++...+.+++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-----Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-----HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 4551 00123344577788889999999999999998643
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=1.8e-05 Score=58.82 Aligned_cols=93 Identities=11% Similarity=-0.008 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCC---
Q 011587 355 HIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACT--- 429 (482)
Q Consensus 355 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 429 (482)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..| .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS--------TAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--------STTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CccHH
Confidence 4556777788888888888888888877 3334 677788888888899999999999999998887 44
Q ss_pred ---chhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 430 ---SEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 430 ---~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
...+..+..++...|++++|...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 55666777777777777666554443
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00017 Score=53.94 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=58.1
Q ss_pred HHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 011587 338 EGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 338 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
.|...|++..+ ..+.+...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777766 23445677777888888888888888888776 3334 56677777778888888888888888887
Q ss_pred hcCC
Q 011587 416 QLQP 419 (482)
Q Consensus 416 ~~~~ 419 (482)
+..+
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7665
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.58 E-value=0.00037 Score=54.83 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHH----HHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDC-----GVKPN-AVTF----TSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|+.+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555666666666666666666655542 11332 2344 4555555666666666666665554
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.57 E-value=0.00042 Score=48.95 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhH
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDF 433 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (482)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..| .+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------CCHHHH
Confidence 456677777788888888888888776 2233 567777888888888999999999999888888 677777
Q ss_pred HHHHHHHHhCC
Q 011587 434 VALSNIYASAE 444 (482)
Q Consensus 434 ~~l~~~~~~~g 444 (482)
..+..++.+.|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 77777766543
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00046 Score=50.08 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
+...+..+...|...|++++|...|+++++.+| .+...|..+..+|.+.|++++|...+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--------DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555555555555 445555555555555555555555555443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.51 E-value=0.00057 Score=65.40 Aligned_cols=88 Identities=10% Similarity=-0.070 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHhhhccCC-C---Cc-CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-----CCCCCCchhHHHHHHH
Q 011587 193 KDCAFNALVLFRDMLVDVSG-V---KP-TDTTMVCVLSVSSQLGLLEFGACVHGYMEKT-----FYMPENDVFIGTALVD 262 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~~~~-~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~~~li~ 262 (482)
+|++++|+.++++....... + .| ...+++.+..+|...|++++|+.+++++++. |..-+....+++.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56666666666554411111 1 11 1234555555555555555555555554431 1100112233444445
Q ss_pred HHHcCCChHHHHHHHHhc
Q 011587 263 MYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 263 ~~~~~g~~~~A~~~~~~~ 280 (482)
.|...|++++|+.++++.
T Consensus 402 ~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 555555555555444433
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0026 Score=62.29 Aligned_cols=170 Identities=11% Similarity=0.010 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCC----------hHHHHHHHHhccC---CCHHHHHHHHHHHHh
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGC----------LDNALLIFSRMRE---KNVLTWTAMATGMAI 297 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 297 (482)
...++|.+.++++.... |.+..+|+.--.++...|+ +++++++++.+.+ .+..+|+.-.-.+.+
T Consensus 43 ~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34467788899998887 7778888887777777777 8899999998874 466788887778888
Q ss_pred cC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhcc-----
Q 011587 298 HG--KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG-LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRA----- 369 (482)
Q Consensus 298 ~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 369 (482)
.+ +++++++.++++.+.... +...|+.-...+.+.| ..+++.+.++++.+ .-+-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccc
Confidence 88 669999999999887654 7777777777777778 88899999999887 3345677777776666553
Q ss_pred ---------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhH
Q 011587 370 ---------GHLEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVAL 406 (482)
Q Consensus 370 ---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 406 (482)
+.++++++.+++. .+.| +...|.-+-..+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 4568888888776 4445 77788877777777666443
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0026 Score=49.31 Aligned_cols=112 Identities=9% Similarity=-0.120 Sum_probs=64.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHH
Q 011587 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEE 374 (482)
Q Consensus 299 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 374 (482)
+++++|...|++..+.| .|... +-..|...+.+++|.+.|++..+. | +...+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 35666666666666665 22322 555555556666666666666662 2 44555555555655 556666
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhcCC
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNV----HGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 419 (482)
|.++|++.--.-+...+..|...|.. .++.++|..+|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66666655112355555556656655 5666666666666666554
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0033 Score=48.70 Aligned_cols=106 Identities=6% Similarity=-0.066 Sum_probs=87.5
Q ss_pred CChHHHHHHHHhccCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCcHHHHHHH
Q 011587 268 GCLDNALLIFSRMREK-NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH----AGLVEEGLHL 342 (482)
Q Consensus 268 g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~ 342 (482)
+++++|..+|++..+. +.... |...|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|..+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4789999999988753 44444 7777878888999999999998876 56777778888877 8999999999
Q ss_pred HHHhHHhcCCCcCHHHHHHHHHHHhc----cCCHHHHHHHHHcC
Q 011587 343 FDNMKSKWGVEPHIKHYSCIVDLLGR----AGHLEEAYNFIMGI 382 (482)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 382 (482)
|++..+. | +...+..|...|.. .++.++|.++|++.
T Consensus 84 ~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 84 YSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9999984 4 56677888888888 88999999999876
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00021 Score=52.83 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444444444444444444444444432 11334444444444445555555555544443
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.26 E-value=0.0022 Score=46.40 Aligned_cols=63 Identities=11% Similarity=-0.032 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
+...+..+..++...|++++|...++++++.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566677777777777777777777777766 5566677777777777777777777776654
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.22 E-value=0.0031 Score=46.84 Aligned_cols=77 Identities=6% Similarity=-0.211 Sum_probs=45.3
Q ss_pred HHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 199 ALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 199 a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
|+..|++.. . ..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+
T Consensus 4 a~~~~~~al--~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAML--A-QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHH--T-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHH--H-hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555543 1 112245566666666666666666666666666655 4455566666666666666666666666
Q ss_pred hcc
Q 011587 279 RMR 281 (482)
Q Consensus 279 ~~~ 281 (482)
+..
T Consensus 78 ~al 80 (115)
T 2kat_A 78 SGL 80 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.18 E-value=0.0038 Score=43.75 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333334444444444444444443321 11233334444444444444444444444443
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.14 E-value=0.0039 Score=44.31 Aligned_cols=69 Identities=10% Similarity=-0.043 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCCc
Q 011587 386 PDAILWRSLLSACNVHGD---VALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRVE 462 (482)
Q Consensus 386 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 462 (482)
.+...+..+..++...++ .++|..+++++++.+| .+......+...+.+.|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456666666666654444 6788888888888888 67888888888888888888888888888766554
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.06 E-value=0.001 Score=52.21 Aligned_cols=95 Identities=11% Similarity=-0.020 Sum_probs=58.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCCh----------HHHHHHHHhccC--C-CHHHHHHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCL----------DNALLIFSRMRE--K-NVLTWTAMATGM 295 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~--~-~~~~~~~li~~~ 295 (482)
+.+.+++|.+.++...+.. |.+...|..+..++...+++ ++|+..|++..+ | +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3455667777777777766 66777777777777766654 366666666553 2 445666666666
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011587 296 AIHG-----------KGNEAIRLLDSMRDCGVKPNAVTFTSLFA 328 (482)
Q Consensus 296 ~~~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 328 (482)
...| ++++|+..|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 6553 677777777776664 455555544443
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.04 E-value=0.0011 Score=52.02 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=57.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC----------HHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH----------LEEAYNFIMGI-PIKP-DAILWRSLLSACN 399 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 399 (482)
+.+.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++. .+.| +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 334556666666666652 23355566656666665554 34777777766 4455 4566777777776
Q ss_pred hc-----------CCHhHHHHHHHHHHhcCC
Q 011587 400 VH-----------GDVALGEKVGKILLQLQP 419 (482)
Q Consensus 400 ~~-----------g~~~~a~~~~~~~~~~~~ 419 (482)
.. |++++|.+.|+++++.+|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 65 589999999999999998
No 210
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.88 E-value=0.36 Score=47.38 Aligned_cols=255 Identities=11% Similarity=0.016 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHH
Q 011587 144 VLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCV 223 (482)
Q Consensus 144 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 223 (482)
...-+..+..+.+.+++.....++.. ...+...-.....+... .|+..+|....+.+- ..| ...+..+..+
T Consensus 72 ~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~-----~G~~~~a~~~~~~lW--~~~-~~~p~~c~~l 142 (618)
T 1qsa_A 72 RTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWN-----TGQSEEAWQGAKELW--LTG-KSQPNACDKL 142 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHH--SCS-SCCCTHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHH--hCC-CCCcHHHHHH
Confidence 34445666777788888888887776 32244444445556666 677666666666654 222 2334455555
Q ss_pred HHHhhccCchHH--HHHHHHHHHHhCC----------CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHH---HH
Q 011587 224 LSVSSQLGLLEF--GACVHGYMEKTFY----------MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVL---TW 288 (482)
Q Consensus 224 ~~~~~~~~~~~~--a~~~~~~~~~~~~----------~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 288 (482)
+..+.+.|.+.. ...=++.+...|. .|+........++..+.. ...+....... .++.. .+
T Consensus 143 ~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~ 218 (618)
T 1qsa_A 143 FSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMA 218 (618)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHH
Confidence 555554443321 1111122222210 000011111112211111 11122222211 11111 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 289 TAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVT----FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 289 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..-+.-+.+ .+.+.|...|........ .+... ...+.......+...++...+...... ..+.....-.+.
T Consensus 219 ~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r 293 (618)
T 1qsa_A 219 AVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHH
T ss_pred HHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHH
Confidence 112222333 366778887777754321 22222 222222333444345566666654442 233333333444
Q ss_pred HHhccCCHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 365 LLGRAGHLEEAYNFIMGIPIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 365 ~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
...+.|+++.|.+.|+.|.-.+ ...-.--+..++...|+.++|..+|+.+.+
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4456688888888888874332 122222244566677888888888887754
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.83 E-value=0.092 Score=39.24 Aligned_cols=141 Identities=11% Similarity=0.111 Sum_probs=98.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH
Q 011587 295 MAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 295 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 374 (482)
+.-.|..++..++..+..... +..-||.+|.-....-+-+-..++++..-+-+. ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence 345677777777777776542 555666666666666666666666666655221 135667777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHH
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRK 454 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (482)
....+-.++ .+...++..+..+..+|+-+.-.+++..+....+ |++.....+..+|.+.|+..+|.+++.
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~--------~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNE--------VSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--------SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCC--------CChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 777776665 3445566677788888888888888888766666 788888888899999999999999988
Q ss_pred HhHhcCCc
Q 011587 455 QMKVKRVE 462 (482)
Q Consensus 455 ~m~~~~~~ 462 (482)
+.-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88888874
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.13 Score=46.40 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=56.8
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+.+..+|..+...+...|++++|...+++. .+.|+...|..+...+.-.|+.++|.+.++++.+.+|
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3567778888877777789999999999888 4458888887788888889999999999999999987
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0022 Score=60.30 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=65.6
Q ss_pred ccCCHHHHHHHHHcC---------CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----cCCCcccccccCCchh
Q 011587 368 RAGHLEEAYNFIMGI---------PIKPD-AILWRSLLSACNVHGDVALGEKVGKILLQ-----LQPEVTFVDVACTSED 432 (482)
Q Consensus 368 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~ 432 (482)
..|++++|+.++++. .-.|+ ..+++.|..+|...|++++|+.+++++++ .|++ -.....+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-----Hp~~a~~ 384 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-----SLNVASM 384 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-----CHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-----ChHHHHH
Confidence 457888888887654 22333 46789999999999999999999999886 3441 0123457
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 433 FVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
++.|...|..+|++++|+.++++..
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8899999999999999999998765
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.0056 Score=57.51 Aligned_cols=85 Identities=19% Similarity=0.081 Sum_probs=65.9
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCCC-HHHHHHHH
Q 011587 332 HAGLVEEGLHLFDNMKSKW--GVEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKPD-AILWRSLL 395 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 395 (482)
+.|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++. ...|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888876531 1222 2568889999999999999998888766 23453 45789999
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 011587 396 SACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~ 416 (482)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999876
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.54 E-value=0.0051 Score=57.86 Aligned_cols=90 Identities=9% Similarity=0.069 Sum_probs=69.2
Q ss_pred HHHHhccCCHHHHHHHHHcC------CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-----CCCccccccc
Q 011587 363 VDLLGRAGHLEEAYNFIMGI------PIKP----DAILWRSLLSACNVHGDVALGEKVGKILLQL-----QPEVTFVDVA 427 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~------~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 427 (482)
+..+.+.|++++|+.++++. -+.| ...+++.+..+|...|++++|+.+++++++. |++ -.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-----Hp 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-----HP 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-----CH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-----Ch
Confidence 45566788999999888755 1223 2457899999999999999999999998863 331 01
Q ss_pred CCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 428 CTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
....+++.|...|...|++++|+.++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 234567889999999999999999988765
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.48 E-value=0.0084 Score=42.89 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch-hHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 394 LLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE-DFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
....+...|++++|...++++++..| .+.. .+..+..+|.+.|++++|...+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34556778889999999999888888 6777 88888888888899999998888887654
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.43 E-value=0.013 Score=55.13 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=68.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhc--CCCc----CHHHHHHHHHHHhccCCHHHHHHHHHcC---------CCCCC-HHH
Q 011587 327 FAACCHAGLVEEGLHLFDNMKSKW--GVEP----HIKHYSCIVDLLGRAGHLEEAYNFIMGI---------PIKPD-AIL 390 (482)
Q Consensus 327 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 390 (482)
+..+.+.|++++|+.++++..+.. -+.| ...+++.+..+|...|++++|+.++++. ...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567788899999888887521 1122 2567888899999999999998888765 33443 457
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999876
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.021 Score=40.66 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHHHHhccCCHHHHHHHHHcC-CCCC-CHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 362 IVDLLGRAGHLEEAYNFIMGI-PIKP-DAI-LWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 362 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|...|+++++..|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566778888888888776 3334 456 777777788888888888888888888887
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.29 E-value=0.036 Score=57.02 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...|..+.+.+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555555555555555555554
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.19 E-value=0.0015 Score=60.44 Aligned_cols=233 Identities=11% Similarity=-0.020 Sum_probs=139.2
Q ss_pred CchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhhHHHHhcC----CCCccHHHHHHHHHHCCCCCCChhhHHHHHH
Q 011587 39 PPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFLFNTLIRC----TPPQDSVLVFAYWVSKGLLTFDDFTYVFALG 114 (482)
Q Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~ 114 (482)
.+.+++.|..+.-.. +...+|...|=+.. |+..|..+|.+ |.+++-+..+...++..- ++..=+.++-
T Consensus 53 ~p~VWs~LgkAqL~~---~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k---e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQK---GMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTS---SSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC---STTTTHHHHH
T ss_pred CccHHHHHHHHHHcc---CchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---ccccHHHHHH
Confidence 345566666666666 66666665554333 34445555555 788887777776666533 3345567888
Q ss_pred HhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCC-----------------------
Q 011587 115 SCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMP----------------------- 171 (482)
Q Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------- 171 (482)
+|++.+ + +.+-++++. .||..-...+.+-|...|.++.|.-+|..+.
T Consensus 125 ayAk~~-r--L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 125 ALAKTN-R--LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHHTSC-S--SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHHhhC-c--HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887 6 555554432 4666666677888888888888888887664
Q ss_pred -CCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCC
Q 011587 172 -MRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMP 250 (482)
Q Consensus 172 -~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 250 (482)
..++.||-.+-.+|.. .+.+.-|.-.--.+. ....-...++..|...|.+++...+++.-+...
T Consensus 195 KAns~ktWKeV~~ACvd-----~~EfrLAqicGLniI-------vhadeL~elv~~YE~~G~f~ELIsLlEaglglE--- 259 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVD-----GKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAALGLE--- 259 (624)
T ss_dssp TCCSSCSHHHHTHHHHH-----SCTTTTTTHHHHHHH-------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---
T ss_pred hcCChhHHHHHHHHHhC-----chHHHHHHHhcchhc-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 1267788888888888 555554443332222 111122234555667777777777666655322
Q ss_pred CCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----------CCHHHHHHHHHHHHhcCChHHHH
Q 011587 251 ENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----------KNVLTWTAMATGMAIHGKGNEAI 305 (482)
Q Consensus 251 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~ 305 (482)
......|+-|.-.|++- +.++..+.++-.-. .....|.-++-.|+.-.+++.|.
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33555666666666654 44444444443321 13445677777777767666554
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.19 E-value=0.11 Score=46.89 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCCHHHHH
Q 011587 318 PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPDAILWR 392 (482)
Q Consensus 318 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 392 (482)
.+..+|..+...+...|++++|...++++... + |+...|..+...+.-.|++++|.+.+++. .+.|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 34555555544444556666666666666663 2 55555555556666666666666666555 4455555543
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.06 E-value=0.0004 Score=64.11 Aligned_cols=238 Identities=9% Similarity=0.016 Sum_probs=172.2
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHH
Q 011587 143 NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVC 222 (482)
Q Consensus 143 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 222 (482)
.+.+|..|..+..+.+++.+|.+.|-+ ..|+..|..+|.+..+ .|.+++-+..+...+ +..-.|. .=+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~-----~~~~edLv~yL~MaR--k~~ke~~--IDte 121 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANT-----SGNWEELVKYLQMAR--KKARESY--VETE 121 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTT-----SSCCTTHHHHHHTTS--TTCCSTT--TTHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHH--HHhcccc--cHHH
Confidence 456788899999999999999888744 4477788889999999 899999999888776 4444443 3357
Q ss_pred HHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC--------------------
Q 011587 223 VLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-------------------- 282 (482)
Q Consensus 223 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------- 282 (482)
|+-+|++.++..+.++++. .++..-...+.+-|...|.++.|.-+|..+..
T Consensus 122 Li~ayAk~~rL~elEefl~---------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 122 LIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHTSCSSSTTTSTTS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHhhCcHHHHHHHHc---------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 8889999998877655442 44665667888889999999999888887652
Q ss_pred ----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHH
Q 011587 283 ----KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKH 358 (482)
Q Consensus 283 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (482)
.++.||-.+-.+|...+.+.-|.-+--.++-. |+ ....++..|-..|-+++-+.+++.-.. .-....-+
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGm 265 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGM 265 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHH
Confidence 36679999999999999888776665554422 11 122466678888999998888887763 22456778
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC----CCCC------CHHHHHHHHHHHHhcCCHhHHH
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI----PIKP------DAILWRSLLSACNVHGDVALGE 408 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~----~~~p------~~~~~~~l~~~~~~~g~~~~a~ 408 (482)
|+.|.-.|++- ++++..+.++-. +++. ....|.-++-.|.+-.+++.|.
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88888888885 566665555443 3322 2345777777888777777654
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.28 Score=39.02 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=90.3
Q ss_pred HHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 011587 261 VDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGL 340 (482)
Q Consensus 261 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 340 (482)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.++|.+..+ |..+.-.|.-.|+.++..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788899998887776 4677899999999999999999999988653 334444555667877766
Q ss_pred HHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 011587 341 HLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKIL 414 (482)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 414 (482)
++-+....+ | -++.-...+.-.|+++++.++|.+.+.-|.... .....|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 665555543 2 234445666778999999999988874332222 123367777888887755
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.25 Score=39.30 Aligned_cols=130 Identities=9% Similarity=0.013 Sum_probs=87.0
Q ss_pred HHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhcc
Q 011587 151 IHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQL 230 (482)
Q Consensus 151 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~ 230 (482)
.......|+++.|.++.+.+ .+...|..|...... .|+++-|.+.|.... -+..+.-.|...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~-----~gn~~lAe~cy~~~~-----------D~~~L~~Ly~~t 73 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALA-----QGNASLAEMIYQTQH-----------SFDKLSFLYLVT 73 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHH-----TTCHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHH-----cCChHHHHHHHHHhC-----------CHHHHHHHHHHh
Confidence 34556788888888887766 367789999999888 899999999999876 244555556667
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
|+.++..++-+.....|- ++.....+.-.|+++++.++|.+......... .....|-.+.|.++.+.
T Consensus 74 g~~e~L~kla~iA~~~g~--------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRED--------FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQ 140 (177)
T ss_dssp TCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcc--------HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHH
Confidence 777777666666655552 23444556667888888888877665322111 11224556667777665
Q ss_pred H
Q 011587 311 M 311 (482)
Q Consensus 311 m 311 (482)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.92 E-value=0.22 Score=51.12 Aligned_cols=104 Identities=11% Similarity=0.058 Sum_probs=68.1
Q ss_pred HHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 152 HFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
......|+++.|.++.+.+. +...|..+...+.+ .++++.|.++|.++. -|..+...+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~-----~~~~~~A~~~y~~~~-----------d~~~l~~l~~~~~ 721 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQ-----RFNFKLAIEAFTNAH-----------DLESLFLLHSSFN 721 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHH-----TTCHHHHHHHHHHHT-----------CHHHHHHHHHHTT
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHH-----cCCHHHHHHHHHHcc-----------ChhhhHHHHHHcC
Confidence 34456688888888877664 56778888888888 888888888888775 1344555555567
Q ss_pred chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 232 LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
+.+...++-+.....|. ++....+|.+.|++++|++++.++.
T Consensus 722 ~~~~~~~~~~~a~~~~~--------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGK--------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCc--------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 77766666655555542 1334445666777777776655443
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.87 E-value=0.054 Score=38.25 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=49.8
Q ss_pred CcCHHHHHHHHHHHhccCC---HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGH---LEEAYNFIMGI-PIKP-DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|...|+++++..|
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566677777777754443 68888888877 4445 566777777788888889999998888888887
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.39 E-value=0.073 Score=46.12 Aligned_cols=87 Identities=9% Similarity=0.141 Sum_probs=59.6
Q ss_pred HHHHHHHHcC-CCCCC---HHHHHHHHHHHHh-----cCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhC
Q 011587 373 EEAYNFIMGI-PIKPD---AILWRSLLSACNV-----HGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASA 443 (482)
Q Consensus 373 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (482)
..|...+++. .+.|+ -..|..+...|.+ -|+.++|.+.|+++++.+|. -+..++..+.+.+++.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-------~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-------HDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-------TCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-------CCchHHHHHHHHHHHh
Confidence 4455555555 44555 4567777777776 37888888888888888772 2477777788877774
Q ss_pred -CCchHHHHHHHHhHhcCCccCCc
Q 011587 444 -ERWPDVESVRKQMKVKRVETEPG 466 (482)
Q Consensus 444 -g~~~~a~~~~~~m~~~~~~~~~~ 466 (482)
|+.+++.+.+++........+|+
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCC
Confidence 77888888888877666664444
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.38 E-value=0.087 Score=38.06 Aligned_cols=72 Identities=13% Similarity=-0.129 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhc
Q 011587 387 DAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVK 459 (482)
Q Consensus 387 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (482)
+...+..+...+...|+++.|..+++.+++...+.... -.+....+..|..++.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998853210000 0145678899999999999999999999988753
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.35 E-value=0.12 Score=37.28 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHcC-----C----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 356 IKHYSCIVDLLGRAGHLEEAYNFIMGI-----P----IKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 356 ~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+..+...+.+.|+++.|...|+.. . -.+....+..+..++.+.|+++.|...++++.+..|
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 344455566666666666666665544 0 123456677788888888888888888888888877
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.91 E-value=0.14 Score=39.63 Aligned_cols=83 Identities=14% Similarity=-0.008 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC---CHHHHHHHHHcC-CCC-C--CHHHHHHHHHHHHhcCCHhHH
Q 011587 335 LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG---HLEEAYNFIMGI-PIK-P--DAILWRSLLSACNVHGDVALG 407 (482)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a 407 (482)
....+++.|.+..+. + +++..+...+..++++.+ +.+++..+|++. ... | ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344556666655552 3 356677777777777766 455777777666 212 4 233444466677888899999
Q ss_pred HHHHHHHHhcCC
Q 011587 408 EKVGKILLQLQP 419 (482)
Q Consensus 408 ~~~~~~~~~~~~ 419 (482)
.+.++.+++..|
T Consensus 91 ~~y~~~lL~ieP 102 (152)
T 1pc2_A 91 LKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCC
Confidence 999998888888
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.90 E-value=0.85 Score=34.18 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVE 353 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 353 (482)
-.+.-+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-++ |++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 344555666677777777777777533 24566666677777777777777777777777774 654
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.86 E-value=0.13 Score=39.93 Aligned_cols=82 Identities=9% Similarity=-0.130 Sum_probs=63.2
Q ss_pred HHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhcC-CCcccccccCCchhHHHHHHHHHhCCC
Q 011587 372 LEEAYNFIMGI--PIKPDAILWRSLLSACNVHG---DVALGEKVGKILLQLQ-PEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 372 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
...+.+.|.+. .-.++..+.-.+..++++.+ +++++..++++..+.. |+ .+...+..|.-+|.+.|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-------~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-------EQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-------chHHHHHHHHHHHHHccC
Confidence 34455555544 22468888888888999988 7779999999999988 31 246777889999999999
Q ss_pred chHHHHHHHHhHhcC
Q 011587 446 WPDVESVRKQMKVKR 460 (482)
Q Consensus 446 ~~~a~~~~~~m~~~~ 460 (482)
+++|.+.++.+.+..
T Consensus 87 Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 87 YEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999887543
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.84 E-value=0.19 Score=43.52 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHhcCCCcC---HHHHHHHHHHHhc-----cCCHHHHHHHHHcC-CCCC--CHHHHHHHHHHHHhc-CC
Q 011587 336 VEEGLHLFDNMKSKWGVEPH---IKHYSCIVDLLGR-----AGHLEEAYNFIMGI-PIKP--DAILWRSLLSACNVH-GD 403 (482)
Q Consensus 336 ~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~-g~ 403 (482)
...|...+++..+- .|+ ...|..+...|.+ -|+.++|.+.|++. .+.| +..++..+...++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45566666666652 454 4567777777777 37888888888877 5555 256666667777664 88
Q ss_pred HhHHHHHHHHHHhcCC
Q 011587 404 VALGEKVGKILLQLQP 419 (482)
Q Consensus 404 ~~~a~~~~~~~~~~~~ 419 (482)
.+++.+.++++++..+
T Consensus 256 ~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 256 RAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHcCCC
Confidence 8888888888888777
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.52 E-value=0.43 Score=36.56 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 369 AGHLEEAYNFIMGI---PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 369 ~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.+++++|.++|+.+ .-+- ...|-.....-.++|+++.|.+++.+++..++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 36777777777666 2122 66676666667788888888888888888887
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.56 Score=46.99 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK 457 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (482)
...|...|+++.|+++.+++...-| .+-.+|..|+.+|.+.|+|+.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aP--------seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELAL--------DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446778999999999999999999 789999999999999999999999999885
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.16 E-value=4.2 Score=35.80 Aligned_cols=192 Identities=10% Similarity=0.031 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH--
Q 011587 125 LWLGRQIHVHVTKRGFMF-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV-- 201 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~-- 201 (482)
+++.++-++.-++.|--- -...|.++..-|.+.+++++|.+++.. -...+.+ .|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~-----~~Q~~sa~DLa 76 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLK-----AKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHH-----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHH-----CCCcchHHHHH
Confidence 555555555555555211 245677888888999999999998744 2233445 555554444
Q ss_pred --HHHHhhhccCCCCcCHHHHHHHHHHhhccC-----chHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 011587 202 --LFRDMLVDVSGVKPTDTTMVCVLSVSSQLG-----LLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274 (482)
Q Consensus 202 --~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~ 274 (482)
+.+... +.+++++......++..+.... +..-..+...+..+.|-.|..++..+..+...|.+.|++.+|+
T Consensus 77 ~llvev~~--~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 77 FYLLEVYD--LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHH--HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH--HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 344444 6688888888888887776543 2233344455555555434568888999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 011587 275 LIFSRMREKNVLTWTAMATGMAIH---GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSK 349 (482)
Q Consensus 275 ~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 349 (482)
..|---...+...+..++.-+... |...++ +...-..++. |.-.++...|..+++...++
T Consensus 155 ~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 155 RYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 988733333455555555443333 333322 2222223333 33458888888888877653
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.14 E-value=0.25 Score=45.63 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhH-----hcCCccCC
Q 011587 391 WRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMK-----VKRVETEP 465 (482)
Q Consensus 391 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~ 465 (482)
...++..+...|+.+++...++.+....| -+...+..++.++.+.|+..+|.+.|+.+. +.|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34566777889999999999999999999 788899999999999999999999988875 45888877
Q ss_pred cc
Q 011587 466 GS 467 (482)
Q Consensus 466 ~~ 467 (482)
.+
T Consensus 246 ~l 247 (388)
T 2ff4_A 246 TL 247 (388)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.71 E-value=1.8 Score=32.20 Aligned_cols=86 Identities=14% Similarity=-0.035 Sum_probs=57.1
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHH---HHHHHHcC-CCC-C--CHHHHHHHHHHHHhcCCH
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEE---AYNFIMGI-PIK-P--DAILWRSLLSACNVHGDV 404 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~ 404 (482)
.......+.+-|...... |. ++..+-..+..++.+...... ++.++++. ... | .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455566666666552 33 667777777777877776655 67777766 222 3 222333455678889999
Q ss_pred hHHHHHHHHHHhcCC
Q 011587 405 ALGEKVGKILLQLQP 419 (482)
Q Consensus 405 ~~a~~~~~~~~~~~~ 419 (482)
++|.+.++.+++..|
T Consensus 91 ~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 91 EKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999888
No 239
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.71 E-value=5.1 Score=35.57 Aligned_cols=191 Identities=8% Similarity=-0.019 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHhCCC---C-chhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHH
Q 011587 125 LWLGRQIHVHVTKRGFM---F-NVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNAL 200 (482)
Q Consensus 125 ~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~ 200 (482)
+++..+=++.-++.|-- - -...|.++..-|.+.+++++|.+++-. -...+.+ .|+...+.
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~-----~~Q~~sg~ 75 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLR-----SGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHH-----TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHH-----CCCcchHH
Confidence 45555555555555521 1 134677788888999999999998743 1223444 44444433
Q ss_pred HH----HHHhhhccCCCCcCHHHHHHHHHHhhccCch-----HHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChH
Q 011587 201 VL----FRDMLVDVSGVKPTDTTMVCVLSVSSQLGLL-----EFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLD 271 (482)
Q Consensus 201 ~~----~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~ 271 (482)
++ ++-.. +.++++|......++..+.....- .-..+...+-.+.|-.|..++.....+...|.+.+++.
T Consensus 76 DL~~llvevy~--~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 76 DLAVLLVDTFR--QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHH--HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 33 34444 567888888888888777665532 22233344444555444678888899999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 272 NALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 272 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
+|+..|---..+....+..++.-+...+... .++...-..++. |.-.++...|..+++...+
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 9999885322333356655544433333211 122333334444 3345788888877766665
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.68 E-value=10 Score=38.97 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=59.9
Q ss_pred HHHHHHcCCChHHHHHHHHhccC-CCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHhcc
Q 011587 260 LVDMYSKCGCLDNALLIFSRMRE-KNVLTWTAMA--TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFT---SLFAACCHA 333 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~ 333 (482)
|...+.-.|+-+....++..+.+ .+..+...+. -++...|+.+.+..+++.+.... .|. .-|. ++.-+|+..
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGT 573 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTS
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCC
Confidence 34445566666666666655432 2222222232 33445677777777777766531 222 2222 233456677
Q ss_pred CcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 334 GLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 334 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
|+.....+++..+.+ ....+..-...+.-++...|+.+.+.++++.+
T Consensus 574 Gn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 574 GNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp CCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred CCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 776666667777766 22223333333333444455555555555433
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.19 E-value=0.47 Score=36.33 Aligned_cols=54 Identities=2% Similarity=-0.141 Sum_probs=44.3
Q ss_pred hcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 400 VHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 400 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
..+|.++|.++|+.++.... .=...|...+..-.++|+...|.+++......+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hK--------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCK--------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCT--------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 44899999999999988744 2267777888888999999999999998775543
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.53 E-value=1.1 Score=33.39 Aligned_cols=85 Identities=6% Similarity=-0.188 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCC
Q 011587 370 GHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVAL---GEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAE 444 (482)
Q Consensus 370 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (482)
.....+.+-|.+. .-.|+..+--.+..++.+..+... +..+++...+.+.. .........|.-++.+.|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p------~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK------EEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHHhh
Confidence 3444455555444 114777777778888888876666 88899988887630 024566678889999999
Q ss_pred CchHHHHHHHHhHhcC
Q 011587 445 RWPDVESVRKQMKVKR 460 (482)
Q Consensus 445 ~~~~a~~~~~~m~~~~ 460 (482)
++++|.+.++.+.+..
T Consensus 89 ~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTE 104 (126)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999987544
No 243
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.22 E-value=3.5 Score=28.83 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
...++|..|-+.+...+ . ...+-.+-+..+...|+|++|..+.+...-||...|-+|-. .+.|..+++..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 35677888888887776 3 44444444556778899999999999999999999877765 477888888888878
Q ss_pred HHhCCCCCCHHHH
Q 011587 311 MRDCGVKPNAVTF 323 (482)
Q Consensus 311 m~~~g~~p~~~~~ 323 (482)
+...| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 87776 4444444
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.93 E-value=7.7 Score=41.49 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=85.8
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHh
Q 011587 148 TTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVS 227 (482)
Q Consensus 148 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~ 227 (482)
..++..+.+.+..+-+.++..-.+. +...--.+..++.. .|++++|...|++. ..|+..+....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~-----~ge~~~A~~~F~ka---a~~~~~~~~l~------- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLK-----SKEAVKAVRCFKTT---SLVLYSHTSQF------- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHH-----TTCHHHHHHHHHTC---CCSCTTCCCSC-------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHh-----cCCHHHHHHHHHHH---hhhhcccchhh-------
Confidence 3455666777888877776655544 33333345567778 99999999999887 44443321100
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CC----HHHHHHHHHHHHhcC
Q 011587 228 SQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KN----VLTWTAMATGMAIHG 299 (482)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~~ 299 (482)
..... +..+.........-..-|..++..+.+.|.++.+.++-....+ .+ ...|..+.+++...|
T Consensus 880 ---~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 880 ---AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp ---SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 00000 1111111110011223455566666666666666555443321 11 124666677777777
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL 335 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 335 (482)
++++|...+-.+..... -...+..|+..+|..+.
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCC
Confidence 77777777766655432 23444555555554443
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.89 E-value=6.5 Score=42.05 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCC--------------------------CHHHHHHHHHHHHhcCChHHHHH
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREK--------------------------NVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
+......+..+|...|++++|...|.+.... -..-|..++..+-+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455677788888888888888776420 01235667777777788887777
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHH
Q 011587 307 LLDSMRDCGVKPN----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEA 375 (482)
Q Consensus 307 ~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 375 (482)
+-....+....-+ ...|..+++++...|++++|...+-.+... .. -......|+...+..|..+.-
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--HHHHHHHHHHHHHhCCChhhh
Confidence 7666554321111 124667777888888888887777766552 22 345666777767666655544
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.82 E-value=3.8 Score=28.69 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=63.9
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDS 310 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 310 (482)
...++|..|-+.+...+ . ...+-.+-+..+...|+|++|..+.+...-||...|-+|-. .+.|..+++..-+.+
T Consensus 21 H~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45678888888887776 3 44444444556778899999999999999999999977765 467888888888878
Q ss_pred HHhCCCCCCHHHHH
Q 011587 311 MRDCGVKPNAVTFT 324 (482)
Q Consensus 311 m~~~g~~p~~~~~~ 324 (482)
+...| .|....|.
T Consensus 95 la~sg-~p~~q~Fa 107 (116)
T 2p58_C 95 LARSQ-DPRIQTFV 107 (116)
T ss_dssp HTTCC-CHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 87776 44444443
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.97 E-value=2 Score=30.23 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+-++.+.|.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445666667777777778888888888888888888888888888887753333 345655554
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.75 E-value=1.7 Score=43.60 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=79.6
Q ss_pred HHHHHHHHhCCC-hhHHHHHhccCCCCCc--hh--HHHHHHHHhcCCcccccchHHHHHHHHHhhhc----cCCCCc-C-
Q 011587 148 TTLIHFYASNKD-ISSGKKVFDQMPMRSS--AT--WNAMINGYCSQSKKAKDCAFNALVLFRDMLVD----VSGVKP-T- 216 (482)
Q Consensus 148 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~--~~--~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~p-~- 216 (482)
..++..+...++ ++.|..+|+++...++ .+ ...++..+... ...--+|++++.+.... .....+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~----~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHI----ETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTC----GGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 445555555666 4778888887764332 21 22333333331 12233445444443200 001111 1
Q ss_pred ---------HHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 011587 217 ---------DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMR 281 (482)
Q Consensus 217 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 281 (482)
......-...|...|+++.|.++-++..... |.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122233455677899999999999998887 7789999999999999999999999999886
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.52 E-value=5.3 Score=30.27 Aligned_cols=67 Identities=10% Similarity=0.059 Sum_probs=45.6
Q ss_pred CcCHHHHHHHHHHHhccCCHH---HHHHHHHcC-CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHLE---EAYNFIMGI-PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|+..+--.+..++.+..+.+ +++.++++. ...| .....-.|.-++.+.|++++|.+..+.+++..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 567777777777777776544 566677666 2233 223333455678888888888888888888888
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.44 E-value=17 Score=33.24 Aligned_cols=166 Identities=10% Similarity=-0.025 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHhCC-CC-CCchhHHHHHHHHHHcCC-ChHHHHHHHHhccC---CCHHHH--
Q 011587 217 DTTMVCVLSVSSQLGLLEFGACVHGYMEKTFY-MP-ENDVFIGTALVDMYSKCG-CLDNALLIFSRMRE---KNVLTW-- 288 (482)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~-- 288 (482)
......+...|.+.|+.++..+++......-. .| .........+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888776643211 00 113344567777776644 33333444433332 111222
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCcCHHH
Q 011587 289 ----TAMATGMAIHGKGNEAIRLLDSMRDCGVKPN-----AVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-GVEPHIKH 358 (482)
Q Consensus 289 ----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 358 (482)
..++..|...|++.+|..++.++.+.=-..| ...|..-+..|...++..++...+....+.. .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567788888888888888888765311112 2234555666778888888888888776531 12233332
Q ss_pred HHHH----HHHHh-ccCCHHHHHHHHHcC
Q 011587 359 YSCI----VDLLG-RAGHLEEAYNFIMGI 382 (482)
Q Consensus 359 ~~~l----i~~~~-~~g~~~~A~~~~~~~ 382 (482)
...+ ...+. ..+++.+|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2221 22344 678888887777653
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.10 E-value=2 Score=39.52 Aligned_cols=53 Identities=6% Similarity=-0.056 Sum_probs=26.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIM 380 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 380 (482)
++.++...|+++++...+..+.. ..+.+...+..+|.++.+.|+..+|++.|+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444445555555555555544 223344455555555555555555554443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.97 E-value=20 Score=33.53 Aligned_cols=187 Identities=10% Similarity=0.049 Sum_probs=116.6
Q ss_pred ccchHHHHHHHHHhhhc---cCCCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHH----HH
Q 011587 193 KDCAFNALVLFRDMLVD---VSGVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDM----YS 265 (482)
Q Consensus 193 ~~~~~~a~~~~~~m~~~---~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~----~~ 265 (482)
.++++.|++.+..+..+ ......+......++..|...++++...+.+..+.+... . .......+++. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~--q-lk~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG--Q-LKLSIQYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT--T-SHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh--h-hHHHHHHHHHHHHHHHh
Confidence 67889998888766521 123444567788899999999999988877766654321 1 22222333332 22
Q ss_pred cCCC--hHHHHHHHHhccC---C-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCC---HHHHHHHHH
Q 011587 266 KCGC--LDNALLIFSRMRE---K-------NVLTWTAMATGMAIHGKGNEAIRLLDSMRD--CGVKPN---AVTFTSLFA 328 (482)
Q Consensus 266 ~~g~--~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~ 328 (482)
.... .+.-..+.+.... . .......|...|...|++.+|..++..+.. .|.... ...+...+.
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2332 2223333333322 1 112345677888899999999999998854 232222 245666777
Q ss_pred HHhccCcHHHHHHHHHHhHHh-cCCCcC----HHHHHHHHHHHhccCCHHHHHHHHHcC
Q 011587 329 ACCHAGLVEEGLHLFDNMKSK-WGVEPH----IKHYSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 329 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
.|...+++.+|..++.++... +...+. ...+...+..+...+++.+|.+.|.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888899999999999887532 111222 235566677777888888888877665
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.95 E-value=30 Score=35.61 Aligned_cols=163 Identities=13% Similarity=0.090 Sum_probs=82.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-CCHH-HHH---HHHHHHHhcCChHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-KNVL-TWT---AMATGMAIHGKGNE 303 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~~~~~~ 303 (482)
-.|+.+....++..+.+.. ..+..-..++.-++.-.|+.+.+..+.+.+.. .+.. -|. ++..+|+-.|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3344444444444444321 22222223333344466777777777666653 2322 232 23445677788777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH-HHHHHHHHcC
Q 011587 304 AIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL-EEAYNFIMGI 382 (482)
Q Consensus 304 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 382 (482)
..++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .++.+++..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 777888877652 22333332233344445666666777766665 2345555444444444444443 4566666666
Q ss_pred CCCCCHHHHHHHHHH
Q 011587 383 PIKPDAILWRSLLSA 397 (482)
Q Consensus 383 ~~~p~~~~~~~l~~~ 397 (482)
.-.+|..+-..-+.+
T Consensus 656 ~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 656 TKDPVDFVRQAAMIA 670 (963)
T ss_dssp HTCSSHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 334454444333333
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.74 E-value=5.1 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 376 YNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 376 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
+.-+-.+.+-|++....+.+++|.+..|+..|.++++-+..+-. +...+|..++.
T Consensus 33 lN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--------~~~~iY~~~lq 87 (109)
T 1v54_E 33 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--------PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------TCTTHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--------CchhhHHHHHH
Confidence 33333446778888888888888888888888888888776655 34455665553
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.66 E-value=3.9 Score=31.98 Aligned_cols=125 Identities=12% Similarity=0.031 Sum_probs=63.4
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCH-------HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011587 245 KTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNV-------LTWTAMATGMAIHGKGNEAIRLLDSMR 312 (482)
Q Consensus 245 ~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~ 312 (482)
..|..|......+..-+..+...|.++.|+-+.+.+.. +++ .++..+..++...+++..|...|++..
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34555545555556667777788888888877776542 221 255666777788888888888888764
Q ss_pred hCC-CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCC
Q 011587 313 DCG-VKPNA-VTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIP 383 (482)
Q Consensus 313 ~~g-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 383 (482)
+.. .-+.. .+...+ ........ . .....+...---+..+|.+.+++++|+.+++.++
T Consensus 91 q~~k~l~k~~s~~~~~----~~~ss~p~---------s-~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 91 QQKKALSKTSKVRPST----GNSASTPQ---------S-QCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCccccc----cccCCCcc---------c-ccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 321 11111 111101 00000000 0 0122233444446778888888999988888874
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.07 E-value=4.4 Score=30.24 Aligned_cols=63 Identities=16% Similarity=0.342 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 300 KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 300 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
+.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-.+.+.| +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666677777777888888888888888888888888888888887533 33445666654
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.62 E-value=4 Score=30.52 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=41.9
Q ss_pred CcCHHHHHHHHHHHhccCCH---HHHHHHHHcC-CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 353 EPHIKHYSCIVDLLGRAGHL---EEAYNFIMGI-PIKP--DAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 353 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
.|+..+--.+..++.+..+. .+++.++++. ...| ....+-.|.-++.+.|++++|.+..+.+++..|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 45556655666666666544 3456666665 2234 233444555677778888888888888887777
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.48 E-value=9.6 Score=29.77 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=67.1
Q ss_pred cCCCCcCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCc-------hhHHHHHHHHHHcCCChHHHHHHHHhc
Q 011587 210 VSGVKPTDT--TMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPEND-------VFIGTALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 210 ~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~ 280 (482)
..|+.|... ++..-+..+...+.++.|+-+.+.+....-. +++ ..++..+.+++...|++..|...|++.
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp ----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345666443 4556677788889999998888876554310 112 236677889999999999999999886
Q ss_pred cC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 281 RE------KNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 281 ~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.+ .+..+...+- ....... .....++...--.+..+|.+.+++++|+.+++.+..
T Consensus 90 Lq~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 42 1111111110 0000000 011122333333466777888888888888877654
No 259
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.72 E-value=11 Score=29.05 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=52.8
Q ss_pred CCChhhHHHHhcC-CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 ~~~~~~~~~ll~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
+.|..-....|.. ...+++.++|..|...|+--.-+.-|......+...| + +.+|.++++.-++.+-.|-..
T Consensus 65 knD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-~--~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG-E--LQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp TTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHcCCccHHH
Confidence 5566655555555 5566689999999888876545666777777777777 7 999999999988887777443
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.83 E-value=29 Score=30.51 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHhCCCCCCHHHHHHHHHHH
Q 011587 255 FIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR----LLDSMRDCGVKPNAVTFTSLFAAC 330 (482)
Q Consensus 255 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~ 330 (482)
..|.++..=|.+.+++++|++++..- ...+.+.|+...|.+ +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566677777888888888875432 223455666555544 455556678888888888888776
Q ss_pred hccCcHH-HHHHHHHHhHH---hcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-----------------C---C
Q 011587 331 CHAGLVE-EGLHLFDNMKS---KWG--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-----------------P---I 384 (482)
Q Consensus 331 ~~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----------------~---~ 384 (482)
.....-+ .=.++++++.+ +.| -.-++.....+...|.+.|++.+|...|-.- . -
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5532111 11223333322 012 1235677788888899999999987755311 0 1
Q ss_pred CC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 011587 385 KP---DAILWRSLLSACNVHGDVALGEKVGKILLQL 417 (482)
Q Consensus 385 ~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 417 (482)
.| +...-..++ .|...|+...|..+++...+.
T Consensus 183 ~~~e~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 12 111122222 344568888999988877654
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.73 E-value=13 Score=25.99 Aligned_cols=77 Identities=9% Similarity=-0.055 Sum_probs=58.6
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
.-..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+ .|..+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~r-----lGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WH-----LGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HH-----TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--Hh-----cccHHHHHH
Confidence 3348889988888887753 33333344456889999999999999999999999988754 45 777788888
Q ss_pred HHHHhh
Q 011587 202 LFRDML 207 (482)
Q Consensus 202 ~~~~m~ 207 (482)
-+.++.
T Consensus 90 rL~~la 95 (115)
T 2uwj_G 90 RLAGLG 95 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 787774
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.58 E-value=16 Score=29.58 Aligned_cols=81 Identities=6% Similarity=-0.037 Sum_probs=55.9
Q ss_pred CCCcCHHHHHHHHHHhhc--cCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHH
Q 011587 212 GVKPTDTTMVCVLSVSSQ--LGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWT 289 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 289 (482)
..+-|+.-....+...-. .+.......+|..|...|+. ..-...|......+...|++.+|.++|+.-.+.......
T Consensus 72 rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIG-TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 455565544444333222 45567889999999999874 456667888888899999999999999887765544444
Q ss_pred HHHH
Q 011587 290 AMAT 293 (482)
Q Consensus 290 ~li~ 293 (482)
.|..
T Consensus 151 rL~~ 154 (202)
T 3esl_A 151 RLLR 154 (202)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.19 E-value=14 Score=25.92 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=58.5
Q ss_pred cchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHH
Q 011587 122 LSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALV 201 (482)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~ 201 (482)
.-..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+..||...|-+|-. .+ .|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~r-----lGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YR-----LGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HH-----HTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--Hh-----cccHHHHHH
Confidence 3348889988888887753 33333344456889999999999999999999999988754 34 777778888
Q ss_pred HHHHhh
Q 011587 202 LFRDML 207 (482)
Q Consensus 202 ~~~~m~ 207 (482)
-+.++.
T Consensus 91 rL~~la 96 (116)
T 2p58_C 91 RLNRLA 96 (116)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777774
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.69 E-value=28 Score=28.14 Aligned_cols=51 Identities=6% Similarity=-0.050 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHcC---CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 369 AGHLEEAYNFIMGI---PIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 369 ~g~~~~A~~~~~~~---~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
++...++.++|..| ++- --...|......+-..|++++|..+|+..++.+.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34355666666555 322 2556667777777777777777777777777665
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.39 E-value=7.1 Score=33.32 Aligned_cols=57 Identities=5% Similarity=-0.050 Sum_probs=50.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcC
Q 011587 396 SACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKR 460 (482)
Q Consensus 396 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 460 (482)
....+.|++++++.....-++..| .|...-..|+..+|-.|+|+.|.+-++...+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P--------~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP--------KDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 456788999999999999999999 899999999999999999999999888776544
No 266
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.31 E-value=25 Score=27.43 Aligned_cols=72 Identities=7% Similarity=-0.069 Sum_probs=48.6
Q ss_pred CCChhhHHHHhcC-CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh
Q 011587 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL 145 (482)
Q Consensus 71 ~~~~~~~~~ll~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (482)
+.|+.-....|.. ...+++.++|..|...|+--.-+..|......+...+ + +.+|.++|+..++.+-.|-..
T Consensus 60 knD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~-~--~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARE-N--FRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHcCCCcHHH
Confidence 4455544444444 3346678888888888776545556666666666666 7 888888888888887777543
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.97 E-value=24 Score=27.09 Aligned_cols=77 Identities=8% Similarity=-0.081 Sum_probs=45.2
Q ss_pred CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHH
Q 011587 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 291 (482)
..+-|+.-....+...-.. +....+|..|...|+. ..-...|......+...|++.+|.++|+.-.+.+......|
T Consensus 63 ~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 138 (152)
T 4a1g_A 63 KYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFL 138 (152)
T ss_dssp GGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 4444554444433333222 2367788888887764 34555677777777777777777777776665444433333
Q ss_pred H
Q 011587 292 A 292 (482)
Q Consensus 292 i 292 (482)
.
T Consensus 139 ~ 139 (152)
T 4a1g_A 139 Q 139 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.60 E-value=24 Score=26.37 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHH
Q 011587 375 AYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSN 438 (482)
Q Consensus 375 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 438 (482)
++.-+-.+.+-|++......+++|.+.+|+..|.++|+-+..+-. +...+|-.++.
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--------~~~~iY~y~lq 130 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--------PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--------TCTTHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--------CchhhHHHHHH
Confidence 333444457789999999999999999999999999998887665 45556766653
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.11 E-value=15 Score=31.26 Aligned_cols=50 Identities=4% Similarity=-0.258 Sum_probs=22.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHH
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFS 278 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~ 278 (482)
..++......+.+.+.+.|..+......-.+.+...++.|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444445566666666665221111111223333444555555544444
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.84 E-value=38 Score=27.33 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 313 (482)
+..+-...+.++.+.|+.+....+..-+..++..+-...+.++.+.+. .++...+..+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 444445555555555554433333333444555555555555555554 344444444443
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.23 E-value=55 Score=29.00 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRL----LDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
+|.++..=|.+.+++++|++++..- ...+.+.|+...+.++ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455666677788888888765432 1223445554444333 344555667777777777776665
Q ss_pred ccCcHH-HHHHHHHHhHH---hcC--CCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHH--------------
Q 011587 332 HAGLVE-EGLHLFDNMKS---KWG--VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILW-------------- 391 (482)
Q Consensus 332 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~-------------- 391 (482)
....-+ .=..+.+++.+ ++| -.-++.....+...|.+.+++.+|...|- .+-.+....+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 543211 11222222221 012 22345566667777888888888766552 1212221222
Q ss_pred -------HHHHHHHHhcCCHhHHHHHHHHHHh
Q 011587 392 -------RSLLSACNVHGDVALGEKVGKILLQ 416 (482)
Q Consensus 392 -------~~l~~~~~~~g~~~~a~~~~~~~~~ 416 (482)
..++ -|...++...|..+++...+
T Consensus 185 e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 2222 24446788888887776654
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.00 E-value=68 Score=29.89 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC----C-----CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE----K-----NVLTWTAMATGMAIHGKGNEAIRLLDSM 311 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m 311 (482)
..|...|...|++.+|.+++..+.. . -+..+...+..|...+++.+|..++++.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555554431 0 1123344444455555555555555543
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.48 E-value=5.1 Score=37.37 Aligned_cols=99 Identities=11% Similarity=-0.098 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC----CCCCCHHHHHHH-
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNMKSKW-GVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI----PIKPDAILWRSL- 394 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l- 394 (482)
.+...+...|.+.|+.+.|.+.+.++.... +...-...+-.+++.+...+++..+...+.+. .-.++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888999999999999999988741 22223567777888888899999988887766 112333322222
Q ss_pred ---HHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 395 ---LSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 395 ---~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
...+...+++..|...|-++.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2224567889999999888876554
No 274
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.31 E-value=31 Score=25.74 Aligned_cols=72 Identities=6% Similarity=-0.002 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC
Q 011587 315 GVKPNAVTFTSLFAACCHAGL---VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD 387 (482)
Q Consensus 315 g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 387 (482)
+..|+..|-..+..++.++.+ ..+++.+++.+.+. +-.-....+-.|.-++.+.|++++|.+..+.+ .+.|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 345566655555666665554 45678888887774 42223455666777888888888888888877 66664
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.00 E-value=20 Score=33.31 Aligned_cols=96 Identities=7% Similarity=-0.118 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC-----CCHHHHHHH-
Q 011587 218 TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE-----KNVLTWTAM- 291 (482)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l- 291 (482)
.+...+...+.+.|+++.|.+.+.++...-..+..-...+-.++..+...+++..+...+.++.. ++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36667888899999999999999999886654455667788889999999999999988888752 222222111
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHh
Q 011587 292 ---ATGMAIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 292 ---i~~~~~~~~~~~a~~~~~~m~~ 313 (482)
...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223456888888888877644
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.27 E-value=53 Score=28.01 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=78.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHH----HHHHHHHHHhc
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK----HYSCIVDLLGR 368 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~ 368 (482)
....+.|.+++++.....-++... -|...-..+++.+|-.|++++|.+-++...+. .|+.. .|..+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 345678999999999888887753 37777778999999999999999999988873 44433 344444321
Q ss_pred cCCHHHHHHHHHcC---C-CCCCHHHHHHHHHHH--HhcCCHhHHHHHHHHHHhcCC
Q 011587 369 AGHLEEAYNFIMGI---P-IKPDAILWRSLLSAC--NVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 369 ~g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~ 419 (482)
... .++|..- + +.....-...++.+. ...|+.+.|..+-.++.+.-|
T Consensus 79 --~~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 79 --QAR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp --HHH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred --HHH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 111 2344322 1 112233345555554 346999999999999988876
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.14 E-value=43 Score=26.95 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=50.2
Q ss_pred CchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011587 252 NDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACC 331 (482)
Q Consensus 252 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 331 (482)
++..+-...+.++.+.|+.+....+.+-+..++..+-...+.++.+.|..+ +...+..+.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 355555666666666666544444445455566666666666666666543 3344444433 235555555666666
Q ss_pred ccCcHHHHHHHHHHhHH
Q 011587 332 HAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~ 348 (482)
+.+. +.+...+..+.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 6655 344444445544
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=68.00 E-value=95 Score=30.40 Aligned_cols=345 Identities=10% Similarity=-0.098 Sum_probs=165.0
Q ss_pred HHHHHHHHh-cCCCCchHHHHHHHHHhcCCCCCChHHHHHHhhcCCCCChhh-----HHHHhcCCCCccHHHHHHHHHHC
Q 011587 26 QIHAQLITN-ALKSPPLYAQLIQLYCTKKASPQSTKIVHFVFTHFDPPNLFL-----FNTLIRCTPPQDSVLVFAYWVSK 99 (482)
Q Consensus 26 ~i~~~~~~~-g~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~ll~~~~~~~a~~~~~~m~~~ 99 (482)
+|...+.++ +.+......+..+..+++. +++......+.. . |+... +.+.+..|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~---~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARR---EDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhC---CCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 555556655 3444445556777777777 888888887766 3 33221 22333337766676666666555
Q ss_pred CCCCCChhhHHHHHHHhhhccCcchhhh--HHHHHHHHHHhC-----------CCCchhH-HHHHHHHHHhCCChhHHHH
Q 011587 100 GLLTFDDFTYVFALGSCARFCSLSTLWL--GRQIHVHVTKRG-----------FMFNVLV-ATTLIHFYASNKDISSGKK 165 (482)
Q Consensus 100 ~~~p~~~~~~~~ll~~~~~~~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~~-~~~l~~~~~~~g~~~~A~~ 165 (482)
|.. .+..+..++..+...+ . +.. ..+=++.+...| ++++... ...++..+ .+...+..
T Consensus 132 ~~~--~p~~c~~l~~~~~~~g-~--lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~ 203 (618)
T 1qsa_A 132 GKS--QPNACDKLFSVWRASG-K--QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLT 203 (618)
T ss_dssp SSC--CCTHHHHHHHHHHHTT-C--SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHH
T ss_pred CCC--CcHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHH
Confidence 422 4566667777766555 2 221 222222222222 1122111 11122211 12222222
Q ss_pred HhccCCCCCch---hHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHH----HHHHHHHhhccCchHHHHH
Q 011587 166 VFDQMPMRSSA---TWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTT----MVCVLSVSSQLGLLEFGAC 238 (482)
Q Consensus 166 ~~~~~~~~~~~---~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~ 238 (482)
...... ++.. .+...+.-+. ..+.+.|...+.... ... ..+... ...+.......+...++..
T Consensus 204 ~~~~~~-~~~~~~~~~~~~~~rla------r~d~~~A~~~~~~~~--~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~ 273 (618)
T 1qsa_A 204 FARTTG-ATDFTRQMAAVAFASVA------RQDAENARLMIPSLA--QAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAK 273 (618)
T ss_dssp HHHHSC-CCHHHHHHHHHHHHHHH------HHCHHHHHHHHHHHH--HHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHH
T ss_pred HHhccC-CChhhHHHHHHHHHHHH------hcCHHHHHHHHHhhh--hcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 222211 1111 1111222222 346788888887775 222 122222 2233333444453445555
Q ss_pred HHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 011587 239 VHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKN---VLTWTAMATGMAIHGKGNEAIRLLDSMRDCG 315 (482)
Q Consensus 239 ~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 315 (482)
.+....... .+.....-.+....+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+.+...
T Consensus 274 ~~~~~~~~~----~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~- 348 (618)
T 1qsa_A 274 WRDDAIMRS----QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ- 348 (618)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-
T ss_pred HHHhccccC----CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Confidence 555544332 222233334444456788888888888887531 222222445667788888888888887642
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCc---CH-H--HHHHHHHHHhccCCHHHHHHHHHcCCCCCCHH
Q 011587 316 VKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEP---HI-K--HYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI 389 (482)
Q Consensus 316 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~-~--~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~ 389 (482)
. +|-.++.+ .+.|.... +.. ....+ .. . .-..-+..+...|....|...+....-..+..
T Consensus 349 ---~--~fYg~lAa-~~Lg~~~~-------~~~-~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~ 414 (618)
T 1qsa_A 349 ---R--GFYPMVAA-QRIGEEYE-------LKI-DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKT 414 (618)
T ss_dssp ---C--SHHHHHHH-HHTTCCCC-------CCC-CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred ---C--ChHHHHHH-HHcCCCCC-------CCC-CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHH
Confidence 1 23223321 22222100 000 00000 00 0 11223455677888888887777662123433
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHH
Q 011587 390 LWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
....+.......|..+.+.....
T Consensus 415 ~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 415 EQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHH
Confidence 33344444566777777665544
No 279
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=67.45 E-value=32 Score=25.57 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGK--GNEAIRLLDSMRDCGVKPN 319 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 319 (482)
...++.-|...|+.++|.+.++++..| ...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 466788888889999999999988765 23445555556655432 4567778888877765533
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.35 E-value=82 Score=28.73 Aligned_cols=293 Identities=8% Similarity=-0.014 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCC--------CCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccC-CCCc
Q 011587 145 LVATTLIHFYASNKDISSGKKVFDQMPM--------RSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVS-GVKP 215 (482)
Q Consensus 145 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~p 215 (482)
.+...|...|.+.|+.++..+++..... .....-..++..+..........++-..+.++... .. ..-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3456688888889998888888876652 13345567777776643211222222333333332 11 0000
Q ss_pred CHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCChHHHHHHHHhccC------CCHH
Q 011587 216 TDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYM---PENDVFIGTALVDMYSKCGCLDNALLIFSRMRE------KNVL 286 (482)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~ 286 (482)
....=..++..|...|++.+|.+++..+.+.--. +..-..++..-+..|...+++.++...+..... +++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1111226788899999999999998888774321 012234566677888899999999888876642 2222
Q ss_pred HHHH----HHHHHH-hcCChHHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHhccCcHHHHHHHH-HHhHHhcCCC
Q 011587 287 TWTA----MATGMA-IHGKGNEAIRLLDSMRD----CGVKP---NAVTFTSLFAACCHAGLVEEGLHLF-DNMKSKWGVE 353 (482)
Q Consensus 287 ~~~~----li~~~~-~~~~~~~a~~~~~~m~~----~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~ 353 (482)
.... -...+. ..++|..|...|-+..+ .| .| +...|..+...... . ..+...++ ......+ ..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aLl~~-~-r~el~~~l~~~~~~~~-~~ 253 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKIMLG-Q-SDDVNQLVSGKLAITY-SG 253 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTT-C-GGGHHHHHHSHHHHTT-CS
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHHHcC-C-HHHHHHHhcccccccc-CC
Confidence 2111 122345 68899998887766532 11 11 12234333333322 2 12222222 1211211 34
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCch
Q 011587 354 PHIKHYSCIVDLLGRAGHLEEAYNFIMGI--PIKPDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSE 431 (482)
Q Consensus 354 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 431 (482)
|....+..++.+|.. +++.+..++++.. .+..|......+ ..+.+ .= -...+.++. .| -+..
T Consensus 254 pei~~l~~L~~a~~~-~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~-~I---r~~~L~~i~--~p--------YsrI 317 (394)
T 3txn_A 254 RDIDAMKSVAEASHK-RSLADFQAALKEYKKELAEDVIVQAHL-GTLYD-TM---LEQNLCRII--EP--------YSRV 317 (394)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH-HH---HHHHHHHHH--TT--------CSEE
T ss_pred ccHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH-HH---HHHHHHHHh--Hh--------hcee
Confidence 666667777777654 6777777777765 344455432111 10000 00 011111121 22 3556
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 432 DFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
++..+...+.- ..++++..+-+|...|.
T Consensus 318 sl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 318 QVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp EHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred eHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 77777776653 67899999888886654
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=60.33 E-value=27 Score=26.82 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCC
Q 011587 257 GTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGK--GNEAIRLLDSMRDCGVKPN 319 (482)
Q Consensus 257 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 319 (482)
...++.-|...|+.++|.+.++++..| ...+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 467788888889999999999988765 23455555556655332 4567777888777765433
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.44 E-value=34 Score=28.96 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=25.6
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHH--HHHHHHHHHhccCCHHHHHHHHHcCC
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIK--HYSCIVDLLGRAGHLEEAYNFIMGIP 383 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~ 383 (482)
.++.....++++.+.+ .|..++.. .-.+.+...++.|+.+-+..+++..+
T Consensus 192 ~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 243 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243 (285)
T ss_dssp CSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred ccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccC
Confidence 3443334455555555 35554422 11223444556677777777777554
No 283
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=56.52 E-value=62 Score=24.48 Aligned_cols=70 Identities=4% Similarity=-0.025 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcC-CCCCC
Q 011587 317 KPNAVTFTSLFAACCHAGL---VEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGI-PIKPD 387 (482)
Q Consensus 317 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 387 (482)
.|+..+-..+..++.++.+ ..++..+++.+.+. +-.-.....-.|.-++.+.|++++|.++.+.+ .+.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4566665556666666554 45677788887773 32223444555667788888888888887777 55664
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.36 E-value=49 Score=27.28 Aligned_cols=77 Identities=4% Similarity=0.060 Sum_probs=50.9
Q ss_pred CCCcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHH
Q 011587 212 GVKPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAM 291 (482)
Q Consensus 212 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 291 (482)
..+-|..-....+...-. .+....+|..|...|+. ..-...|......+...|++.+|.++|+.-.+........|
T Consensus 112 rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 112 LYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIG-QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp GGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred cccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 444555544433333222 24677899999998874 45666788888888999999999999987765444334333
Q ss_pred H
Q 011587 292 A 292 (482)
Q Consensus 292 i 292 (482)
.
T Consensus 188 ~ 188 (223)
T 4aez_C 188 Q 188 (223)
T ss_dssp H
T ss_pred H
Confidence 3
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.05 E-value=79 Score=24.60 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=39.0
Q ss_pred CCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 352 VEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 352 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
..-|.......+..--.++++.+....+..-++- --...|......+-..|++.+|.++|+..++.+.
T Consensus 59 YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3445544444443333345554444444333332 2455666666677777888888888888777665
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.29 E-value=49 Score=24.48 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCCCC---chhHHHHHHHHhcCCccccc--chHHHHHHHHHhhhccCCCCc
Q 011587 148 TTLIHFYASNKDISSGKKVFDQMPMRS---SATWNAMINGYCSQSKKAKD--CAFNALVLFRDMLVDVSGVKP 215 (482)
Q Consensus 148 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~~--~~~~a~~~~~~m~~~~~~~~p 215 (482)
..++.=|...|+.++|...++++..|. ......+..++-+ .+ ..+.+..++..+. ..|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~-----~~~~~~e~~~~LL~~L~--~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLES-----TGESAFKMILDLLKSLW--KSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHH--HTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHHH--HCCCcC
Confidence 445666666677777777777765442 1223334444444 22 2344556666655 444444
No 287
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.26 E-value=1.4e+02 Score=26.27 Aligned_cols=49 Identities=8% Similarity=0.034 Sum_probs=36.0
Q ss_pred CHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 371 HLEEAYNFIMGI---PIKPD--AILWRSLLSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 371 ~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+..+.+++---+ .+.|. ..+...-|..+.+.+++..|..+.+++++.++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 444455544433 55653 34667778888999999999999999999988
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.10 E-value=53 Score=30.19 Aligned_cols=326 Identities=13% Similarity=0.091 Sum_probs=151.8
Q ss_pred HHHhcCCCCCChHHHHHHhhcCCCCChh---hHHHHhcCCCCccHHHHHHHHHHCCCCCCChh--hHHHHHHHhhhccCc
Q 011587 48 LYCTKKASPQSTKIVHFVFTHFDPPNLF---LFNTLIRCTPPQDSVLVFAYWVSKGLLTFDDF--TYVFALGSCARFCSL 122 (482)
Q Consensus 48 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~~ll~~~~~~~~~ 122 (482)
...+.. |+.+.+..+++....++.. ..+.+..+ -...-.++.+.+.+.|..+ +.. .-.+.+...+..| .
T Consensus 19 ~~Aa~~---g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A-~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g-~ 92 (437)
T 1n11_A 19 HVASFM---GHLPIVKNLLQRGASPNVSNVKVETPLHMA-ARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG-H 92 (437)
T ss_dssp HHHHHH---TCHHHHHHHHHTTCCSCCSSSCCCCHHHHH-HHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT-C
T ss_pred HHHHHC---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCC-C
Confidence 344445 8999999999876654432 12222222 0011278888888877554 321 1123344445555 5
Q ss_pred chhhhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHhccCCCC---CchhHHHHHHHHhcCCcccccchH
Q 011587 123 STLWLGRQIHVHVTKRGFMFNVLV--ATTLIHFYASNKDISSGKKVFDQMPMR---SSATWNAMINGYCSQSKKAKDCAF 197 (482)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~~~~ 197 (482)
. ++++.+++.|..++... -...+...+..|+.+.+..+++.-... +..-++.+. ..+. .|+.+
T Consensus 93 --~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~-~A~~-----~g~~~ 160 (437)
T 1n11_A 93 --T----NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH-VAAK-----YGKVR 160 (437)
T ss_dssp --H----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHH-----TTCHH
T ss_pred --H----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH-HHHH-----cCCHH
Confidence 4 35555566665544221 122344556678888888777654322 222223333 3334 55554
Q ss_pred HHHHHHHHhhhccCCCCcCH---HHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHH
Q 011587 198 NALVLFRDMLVDVSGVKPTD---TTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNAL 274 (482)
Q Consensus 198 ~a~~~~~~m~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~ 274 (482)
-+..+++ .|..++. ... +.+...+..|+.+ +.+.+.+.|..|......-.+.+...+..|+.+-+.
T Consensus 161 ~v~~Ll~------~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 161 VAELLLE------RDAHPNAAGKNGL-TPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHHHHH------TTCCTTCCCSSCC-CHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHh------CCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 4433333 2333321 111 1233344556554 445555666522111111123445566778888777
Q ss_pred HHHHhccCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 011587 275 LIFSRMREK---NVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA---VTFTSLFAACCHAGLVEEGLHLFDNMKS 348 (482)
Q Consensus 275 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 348 (482)
.+++.-... +..-.+.|. ..+..|..+-+ +.+.+.|..++. ...+.+ ...+..|+.+-+..+ .+
T Consensus 230 ~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~L----l~ 299 (437)
T 1n11_A 230 SLLQYGGSANAESVQGVTPLH-LAAQEGHAEMV----ALLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVL----IK 299 (437)
T ss_dssp HHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHH----HH
T ss_pred HHHHcCCCCCCCCCCCCCHHH-HHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHH----Hh
Confidence 777654332 222222232 33455665433 334445544332 222233 333455665544433 33
Q ss_pred hcCCCcCHH---HHHHHHHHHhccCCHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 349 KWGVEPHIK---HYSCIVDLLGRAGHLEEAYNFIMGIPIKP---DAILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 349 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
. |..++.. ..+ .+...+..|+.+-+.-+++. +..+ +..-++.| ...+..|..+ +.+.+++.|.+
T Consensus 300 ~-g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~ 369 (437)
T 1n11_A 300 H-GVMVDATTRMGYT-PLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGAS 369 (437)
T ss_dssp H-TCCTTCCCSSCCC-HHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCC
T ss_pred C-CccCCCCCCCCCC-HHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCC
Confidence 2 4433321 112 23344566777766655554 3222 22222333 3334566654 44445555554
No 289
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.17 E-value=1e+02 Score=24.31 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcC
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHG 299 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 299 (482)
+..+-...+.++.+.++.+....+..-+..++..+-...+.++.+.|
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444332222333333344444444444444443
No 290
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.49 E-value=1.6e+02 Score=26.34 Aligned_cols=81 Identities=9% Similarity=0.056 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--cHHHHHHHHHHhHHhcCCCcCHHHHHHHHH
Q 011587 287 TWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG--LVEEGLHLFDNMKSKWGVEPHIKHYSCIVD 364 (482)
Q Consensus 287 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 364 (482)
..+.++.-|...|+.++|.+.++++..-... .......+..++-+.+ ..+.+.+++..+.+. |+-........+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 3566777778888888888888887532111 1233444555555433 345677777777774 65555555555544
Q ss_pred HHhcc
Q 011587 365 LLGRA 369 (482)
Q Consensus 365 ~~~~~ 369 (482)
.+...
T Consensus 297 vl~~l 301 (358)
T 3eiq_C 297 IYNEI 301 (358)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 44443
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.44 E-value=63 Score=26.32 Aligned_cols=13 Identities=0% Similarity=-0.340 Sum_probs=6.4
Q ss_pred CChHHHHHHhhcC
Q 011587 57 QSTKIVHFVFTHF 69 (482)
Q Consensus 57 ~~~~~a~~~~~~~ 69 (482)
|+++....+++..
T Consensus 20 g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 20 GIYERCRELVEAG 32 (240)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CChHHHHHHHHcC
Confidence 4555555555443
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.74 E-value=1.6e+02 Score=25.72 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc--HHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 288 WTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL--VEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 288 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
.+.++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+.+.+++..+.+. |+-+.......+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 455666777777777777777777421111 12333444445554322 45566777777764 555444444444444
Q ss_pred Hhc
Q 011587 366 LGR 368 (482)
Q Consensus 366 ~~~ 368 (482)
+..
T Consensus 247 l~~ 249 (307)
T 2zu6_B 247 YNE 249 (307)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.02 E-value=1.3e+02 Score=24.68 Aligned_cols=70 Identities=6% Similarity=-0.039 Sum_probs=40.2
Q ss_pred CCChhhHHHHhcC-CCCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc
Q 011587 71 PPNLFLFNTLIRC-TPPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN 143 (482)
Q Consensus 71 ~~~~~~~~~ll~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (482)
+.|..-....|.. ...+++.++|..|...||--.-...|......+...| + +.+|.++|+.-++.+-.|-
T Consensus 114 knD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g-~--~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRG-L--FQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp TTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHcCCccH
Confidence 4454444444444 3445666677777666655434445555555555555 5 7777777776666665553
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.04 E-value=74 Score=24.35 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCChhHHHHHhccCCCC
Q 011587 148 TTLIHFYASNKDISSGKKVFDQMPMR 173 (482)
Q Consensus 148 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 173 (482)
..++.=|...|+.++|...++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 44555566666666666666666544
No 295
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.01 E-value=1.7e+02 Score=25.99 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHcC
Q 011587 359 YSCIVDLLGRAGHLEEAYNFIMGI 382 (482)
Q Consensus 359 ~~~li~~~~~~g~~~~A~~~~~~~ 382 (482)
...++..+.+....+.+.++|.+.
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~s 167 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWREA 167 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHc
Confidence 344455555555666666666654
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.04 E-value=2.4e+02 Score=26.76 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCCCH-------HHHH-HHHHHHHhcCChHHHHHHHHHHHhC
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNV-------LTWT-AMATGMAIHGKGNEAIRLLDSMRDC 314 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 314 (482)
...++|.++..|...+.++.|..+..+..-|.. ..|. -+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455677777788888888888888877754321 1121 2334556677777887777776654
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.79 E-value=98 Score=26.39 Aligned_cols=22 Identities=0% Similarity=-0.215 Sum_probs=12.7
Q ss_pred HHHHHHHcCCChHHHHHHHHhc
Q 011587 259 ALVDMYSKCGCLDNALLIFSRM 280 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~ 280 (482)
+.+...+..|+.+-+..+++.-
T Consensus 64 t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 64 FPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp CHHHHHTTSSSCHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHCC
Confidence 3444555666666666666543
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.75 E-value=94 Score=25.91 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=40.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH
Q 011587 292 ATGMAIHGKGNEAIRLLDSMRDC--GVKP----NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL 365 (482)
Q Consensus 292 i~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 365 (482)
++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Confidence 34455566666666666655321 1221 111222223333333333334444444422 3445555666677
Q ss_pred HhccCCHHHHHHHHH
Q 011587 366 LGRAGHLEEAYNFIM 380 (482)
Q Consensus 366 ~~~~g~~~~A~~~~~ 380 (482)
+.+.|+.++|.++|=
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 777777777776663
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.20 E-value=1.1e+02 Score=25.60 Aligned_cols=28 Identities=4% Similarity=-0.255 Sum_probs=15.5
Q ss_pred CchhHHHHHHHHHhCCCchHHHHHHHHh
Q 011587 429 TSEDFVALSNIYASAERWPDVESVRKQM 456 (482)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (482)
+.......+..+.+.|+-++|..+|=+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445555666666666666655443
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.44 E-value=2.1e+02 Score=29.80 Aligned_cols=108 Identities=8% Similarity=-0.031 Sum_probs=69.5
Q ss_pred HHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----------------------
Q 011587 260 LVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVK---------------------- 317 (482)
Q Consensus 260 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---------------------- 317 (482)
++..+...|.++-|.++...... +...--.+..+|...|++++|..+|++.- .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccccc
Confidence 56666677777777665555554 33322346667777788888888887642 1111
Q ss_pred -CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCH----HHHHHHHHHHhccC
Q 011587 318 -PNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHI----KHYSCIVDLLGRAG 370 (482)
Q Consensus 318 -p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g 370 (482)
....-|..++..+-+.+.++.+.++-+...+. --+-|. ..|+.+.++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 11236889999999999999999888888873 212222 36777777776554
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.56 E-value=2.3e+02 Score=29.42 Aligned_cols=128 Identities=9% Similarity=-0.086 Sum_probs=73.4
Q ss_pred HHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhh
Q 011587 149 TLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSS 228 (482)
Q Consensus 149 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~ 228 (482)
.++..+...|..+-|.++...++.....+ -.+..+|.. .|++++|...|++. ..|+..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~t~~~~-yv~gr~~L~-----~ge~~~A~~~F~kA---A~gl~~~~~~~~~------ 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLK-----SKEAVKAVRCFKTT---SLVLYSHTSQFAV------ 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCSSHHHH-HHHHHHHHH-----TTCHHHHHHHHHTC---CCTTCSSCCSCGG------
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCCChHHH-HHHHHHHHH-----cCCHHHHHHHHHHH---hhhcccCcccccc------
Confidence 36677788899998888887776533333 346677888 99999999999987 5555432211000
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC----CCH----HHHHHHHHHHHhcC
Q 011587 229 QLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE----KNV----LTWTAMATGMAIHG 299 (482)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~ 299 (482)
......++.. ... +.....-|..++..+-+.+-++.+.++-+...+ .|. ..|+.+.++.+..|
T Consensus 880 ----~~~~~~ll~~---~e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 ----LREFQEIAEK---YHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ----GHHHHHHHHH---TTT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----hhhhhhccCc---ccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0001111110 000 011233567777777777877777666554432 222 35666666665443
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.14 E-value=2.6e+02 Score=26.07 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHH
Q 011587 299 GKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNF 378 (482)
Q Consensus 299 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 378 (482)
.+.+-|.++-.+ .|.+=-...|..-...+...|++++|.++-....+ |+--+..|.+.+-.+=...|+..-.+.+
T Consensus 343 ~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 556655554333 33333344555556666677777777777666555 5555666655444433344444444444
Q ss_pred HHcC
Q 011587 379 IMGI 382 (482)
Q Consensus 379 ~~~~ 382 (482)
|..+
T Consensus 418 F~~L 421 (494)
T 1bpo_A 418 FGIL 421 (494)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.88 E-value=95 Score=23.40 Aligned_cols=62 Identities=6% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+.+.+.|.+++..-. .++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 345566666554433 3444444455566777777777664 5555666666666666666543
No 304
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.62 E-value=1.5e+02 Score=23.25 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=85.7
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 253 DVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 253 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
+..+-...+..+.+.|+.+....+.+.+..++..+-...+.++.+.+..+.. ..+..+.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 4444455555555555544444555555556666666666667776665433 33333333 2466666666777777
Q ss_pred cCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 011587 333 AGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAILWRSLLSACNVHGDVALGEKVGK 412 (482)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 412 (482)
.++.+. ...+..+.. .++...-...+.++.+.+..+....+.+-+. .++...-...+.++...|+ +++...+.
T Consensus 103 ~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 103 IGDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcHHH-HHHHHHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 676433 333333333 3566666666777777776543333333333 4677666777777777776 44555555
Q ss_pred HHHh
Q 011587 413 ILLQ 416 (482)
Q Consensus 413 ~~~~ 416 (482)
.+..
T Consensus 176 ~~l~ 179 (201)
T 3ltj_A 176 KLAE 179 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.15 E-value=1.7e+02 Score=23.55 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCc-----hHHHHHHHHHHHHhCC
Q 011587 178 WNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL-----LEFGACVHGYMEKTFY 248 (482)
Q Consensus 178 ~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 248 (482)
.-.+|+++.++-+ ..+++.|+-.+-+|. +.| .|.-..-..++-+....|. ...|...++.....|.
T Consensus 14 HYd~iSAf~KSiR--GSDpDAAly~LaRml--~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 14 HYDVISAFQKSIR--GSDVDAALHYLARLV--EAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHH--HHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHH--HcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345566655433 678888888888888 778 6655555556666655553 2344555566666664
No 306
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.77 E-value=67 Score=22.29 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=29.2
Q ss_pred CChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHHHH
Q 011587 268 GCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEAIR 306 (482)
Q Consensus 268 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 306 (482)
...+.|.++++.+...+..+|..++.++...|...-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 467888888888888888888888888877666555443
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.85 E-value=73 Score=28.36 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHh
Q 011587 256 IGTALVDMYSKCGCLDNALLIFSR 279 (482)
Q Consensus 256 ~~~~li~~~~~~g~~~~A~~~~~~ 279 (482)
....++..+.+....+.+.++|.+
T Consensus 143 fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 143 LLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHH
Confidence 344445555555555555555554
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.42 E-value=89 Score=25.44 Aligned_cols=184 Identities=12% Similarity=-0.031 Sum_probs=88.3
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC---CHHHHHHHHHHHHhcCC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK---NVLTWTAMATGMAIHGK 300 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 300 (482)
+...+..|+.+.+..+++.+.+.+..+......-.+.+...+..|+.+-+..+++.-..+ +..-++. +...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 444566788888888887776666522111111223455566678887777777654432 2111222 333356677
Q ss_pred hHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHH---HHHHHHHHHhccCCHHH
Q 011587 301 GNEAIRLLDSMRDCGVKP---NAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIK---HYSCIVDLLGRAGHLEE 374 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~ 374 (482)
.+-+..+++.....++.+ +....+.+. ..+..|+.+-+.. +.+. |..++.. .-.+.+...+..|+.+-
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~----Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETVQL----LLER-GADIDAVDIKSGRSPLIHAVENNSLSM 165 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHHHH----HHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHHHH----HHHc-CCCcccccccCCCcHHHHHHHcCCHHH
Confidence 766666665543211121 112222222 2334566544443 3442 4443321 12233444556777776
Q ss_pred HHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC
Q 011587 375 AYNFIMGIPIKPD---AILWRSLLSACNVHGDVALGEKVGKILLQLQPE 420 (482)
Q Consensus 375 A~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 420 (482)
+.-+++. |..++ ..-.+ .+...+..|+.+- ++.+++.|.+
T Consensus 166 v~~Ll~~-g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~ga~ 208 (241)
T 1k1a_A 166 VQLLLQH-GANVNAQMYSGSS-ALHSASGRGLLPL----VRTLVRSGAD 208 (241)
T ss_dssp HHHHHHT-TCCTTCBCTTSCB-HHHHHHHHTCHHH----HHHHHHTTCC
T ss_pred HHHHHHc-CCCCCCcCCCCCC-HHHHHHHcCCHHH----HHHHHhcCCC
Confidence 6666654 32322 11122 2333455677554 4444455553
No 309
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.38 E-value=55 Score=26.77 Aligned_cols=141 Identities=8% Similarity=-0.055 Sum_probs=73.0
Q ss_pred cCcchHHHHHHHHHHhcCCCCchH--HHHHHHHHhcCCCCCChHHHHHHhhcCCCCCh---hhHHHHhcC---CCCccHH
Q 011587 19 TTPSHIKQIHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFDPPNL---FLFNTLIRC---TPPQDSV 90 (482)
Q Consensus 19 ~~~~~~~~i~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~---~~~~~a~ 90 (482)
|+.+.++.+.+.+.+.|..++..- ....+...+.. |+.+.+..+++....++. .-++.+..+ |+.+-..
T Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 96 (241)
T 1k1a_A 20 GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT---TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR 96 (241)
T ss_dssp TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc---CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 888888888888877776655321 22234445556 889988888887654332 222223222 5443333
Q ss_pred HHHHHHHHCCCCC--CChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchh---HHHHHHHHHHhCCChhHHHH
Q 011587 91 LVFAYWVSKGLLT--FDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVL---VATTLIHFYASNKDISSGKK 165 (482)
Q Consensus 91 ~~~~~m~~~~~~p--~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 165 (482)
.+++.....++.+ .+...... +...+..+ . . ++++.+++.|..++.. .-...+...+..|+.+-+.-
T Consensus 97 ~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~-~--~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 97 ALLDSAAPGTLDLEARNYDGLTA-LHVAVNTE-C--Q----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168 (241)
T ss_dssp HHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHT-C--H----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCccccccccCcCCCcH-HHHHHHcC-C--H----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence 3333222111111 12222222 33334445 4 3 4555666666554432 12334555567788877777
Q ss_pred HhccC
Q 011587 166 VFDQM 170 (482)
Q Consensus 166 ~~~~~ 170 (482)
+++.-
T Consensus 169 Ll~~g 173 (241)
T 1k1a_A 169 LLQHG 173 (241)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 77653
No 310
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.44 E-value=1.1e+02 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHhccC
Q 011587 130 QIHVHVTKRGFMFNVLV--ATTLIHFYASNKDISSGKKVFDQM 170 (482)
Q Consensus 130 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 170 (482)
++++.+++.|..++... -...+...+..|+.+-+..+++.-
T Consensus 25 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 34555556665443211 112344555677777777776653
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.42 E-value=1.4e+02 Score=22.54 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+.+.+.|.+++..-. .++..+...+..-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 345566666544332 3445555555566777777777664 5555666655566666666543
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.86 E-value=2.1e+02 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCC
Q 011587 395 LSACNVHGDVALGEKVGKILLQLQP 419 (482)
Q Consensus 395 ~~~~~~~g~~~~a~~~~~~~~~~~~ 419 (482)
+..|.+.|.+++|.+++++.....+
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~ 148 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPN 148 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----
T ss_pred HHHHHHccchHHHHHHHHHHhcCCC
Confidence 3457778888888888887666554
No 313
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.85 E-value=1e+02 Score=27.27 Aligned_cols=88 Identities=11% Similarity=-0.072 Sum_probs=44.2
Q ss_pred ChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCChhHHHHHhccCCCCCc-hhHHHH
Q 011587 105 DDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLV--ATTLIHFYASNKDISSGKKVFDQMPMRSS-ATWNAM 181 (482)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l 181 (482)
|..-...|..+ +..| + .+ +++.+++.|..++... -.+.+...+..|+.+-+.-+++.-...+. .-++.|
T Consensus 17 d~~g~t~L~~A-a~~g-~--~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L 88 (364)
T 3ljn_A 17 DDENMEKIHVA-ARKG-Q--TD----EVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPI 88 (364)
T ss_dssp CHHHHHHHHHH-HHHT-C--HH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred CCCCCCHHHHH-HHcC-C--HH----HHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence 44444444444 4555 5 44 4444555665544321 12234455566888777777765443322 223333
Q ss_pred HHHHhcCCcccccchHHHHHHHHHh
Q 011587 182 INGYCSQSKKAKDCAFNALVLFRDM 206 (482)
Q Consensus 182 i~~~~~~~~~~~~~~~~a~~~~~~m 206 (482)
. ..+. .|+.+-+..+++..
T Consensus 89 ~-~A~~-----~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 89 H-LAVM-----ANKTDLVVALVEGA 107 (364)
T ss_dssp H-HHHH-----TTCHHHHHHHHHHH
T ss_pred H-HHHH-----cCCHHHHHHHHHhc
Confidence 3 3334 56666665565553
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.45 E-value=1.2e+02 Score=22.46 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 311 MRDCGVKPNAVTFTSLFAACCHAG-LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 311 m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
+.+.|.+++..-. .++..+...+ ..-.|.++++.+.++ +...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCc
Confidence 4455665554433 3444444444 455666666666663 444455554444555554443
No 315
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=29.20 E-value=82 Score=25.54 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=81.0
Q ss_pred HHHHHHHcCCChHHHHHHHHhccCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHh
Q 011587 259 ALVDMYSKCGCLDNALLIFSRMREKN----VLTWTAMATGMAIHGKGNEAIRLLDSMRDCGVKPNA---VTFTSLFAACC 331 (482)
Q Consensus 259 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~ 331 (482)
+.+...++.|+.+-+.-+++.-...+ ..-.+. +...+..|+.+-+ +.+.+.|..++. ...+. +...+
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-l~~A~ 117 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLSMV----VQLMKYGADPSLIDGEGCSC-IHLAA 117 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCH-HHHHH
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCH-HHHHH
Confidence 34556677788887777776654321 111222 2333445665433 444455554432 22222 33334
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCcCH---HHHHHHHHHHhccCCHHHHHHHHHcCCCCCCHH---HHHHHHHHHHhcCCHh
Q 011587 332 HAGLVEEGLHLFDNMKSKWGVEPHI---KHYSCIVDLLGRAGHLEEAYNFIMGIPIKPDAI---LWRSLLSACNVHGDVA 405 (482)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~ 405 (482)
..|+.+-+..+ .+. |..++. ...+.+..+ +..+......+++.+.+..++.. .-.+.+...+..|+.+
T Consensus 118 ~~~~~~~~~~L----l~~-~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~ 191 (240)
T 3eu9_A 118 QFGHTSIVAYL----IAK-GQDVDMMDQNGMTPLMWA-AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT 191 (240)
T ss_dssp HTTCHHHHHHH----HHT-TCCTTCCCTTSCCHHHHH-HHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred HcCHHHHHHHH----Hhc-CCCccccCCCCCcHHHHH-HHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH
Confidence 55665544433 332 443322 122233333 33344445556665553333211 1112344455677766
Q ss_pred HHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCCchHHHHHHHHhHhcCC
Q 011587 406 LGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAERWPDVESVRKQMKVKRV 461 (482)
Q Consensus 406 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 461 (482)
-+.-++ +.+.++.. .+..-. +-+....+.|+.+-+..+++...+.++
T Consensus 192 ~v~~Ll----~~g~~~~~----~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 192 VISLLL----EAGANVDA----QNIKGE-SALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp HHHHHH----HHTCCTTC----BCTTSC-BHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHH----HcCCCCCC----cCCCCC-CHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 544444 44543211 111111 233444667777777767666555443
No 316
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.10 E-value=1.2e+02 Score=19.79 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAG-LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
.|.+.|+..+..-. .++..+...+ ..-.+.++++.+.++ +...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 45566666655443 4555555543 455666777777663 445556666666666665553
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.77 E-value=1.3e+02 Score=22.81 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=36.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCCH
Q 011587 309 DSMRDCGVKPNAVTFTSLFAACCHAG-LVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 309 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+.+.+.|.+++..-. .++..+...+ ..-.|.++++.+.++ +...+..|...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 345667776665443 3455555554 566777777777774 5455666655556666665543
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.02 E-value=3e+02 Score=23.95 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=39.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC--HHHHHHHHHcC
Q 011587 323 FTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH--LEEAYNFIMGI 382 (482)
Q Consensus 323 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~ 382 (482)
...++.-|...|+.++|.+.++++..- .+. .......+..++-+.++ .+...+++..+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L 228 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIIMVLESTGESTFKMILDLLKSL 228 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG-GGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC-cch-HHHHHHHHHHHHccCChHHHHHHHHHHHHH
Confidence 467888888899999999999999652 222 23455566666666543 34456666665
No 319
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.96 E-value=1.5e+02 Score=20.56 Aligned_cols=65 Identities=6% Similarity=-0.031 Sum_probs=42.0
Q ss_pred CCccHHHHHHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHH-HhCCCCchhHHHHHH
Q 011587 85 PPQDSVLVFAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVT-KRGFMFNVLVATTLI 151 (482)
Q Consensus 85 ~~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~ 151 (482)
..-.|.++.++....|+.| +..+..-++..|...+.+ ..+-+.+++.... ..|..|+....+.+=
T Consensus 24 ~~Vsae~L~eEfdefGi~~-~d~VldKc~ELC~~y~ld-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 24 MSASAQQLAEELQIFGLDC-EEALIEKLVELCVQYGQN-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCCCHHHHHHHHHHHTCBC-CHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred hhccHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3456778888888889998 778888888888887722 1222333333322 246777777666543
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.90 E-value=1.9e+02 Score=21.64 Aligned_cols=64 Identities=6% Similarity=-0.085 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh
Q 011587 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDIS 161 (482)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 161 (482)
.+.+.+.|+++ +. .=..++..+...+ . .-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 10 ~~~l~~~g~r~-T~-qR~~Il~~L~~~~-~--~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 10 LETLKETGVRI-TP-QRHAILEYLVNSM-A--HPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHTTCCC-CH-HHHHHHHHHHHCS-S--CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCC-CH-HHHHHHHHHHhCC-C--CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34466777665 33 3344555555555 5 6678889998887766667777666777888877554
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.00 E-value=1.2e+02 Score=23.39 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCcCHHHHHHHHHHHhccCCH
Q 011587 302 NEAIRLLD-SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKW-GVEPHIKHYSCIVDLLGRAGHL 372 (482)
Q Consensus 302 ~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 372 (482)
+.+++-+. .+.+.|.+++..- ..++..+...+..-.|.++++.+.++. +...+..|.-.-++.+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33443333 3455677665443 345566666666777788877777620 3344555555556666666643
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.88 E-value=1.3e+02 Score=24.42 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCchH--HHHHHHHHhcCCCCCChHHHHHHhhcCC
Q 011587 27 IHAQLITNALKSPPLY--AQLIQLYCTKKASPQSTKIVHFVFTHFD 70 (482)
Q Consensus 27 i~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 70 (482)
+.+.+.+.|..++... ....+...+.. |+.+.+..+++...
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~ 68 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAEN---NHLEAVKYLIKAGA 68 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHTTTC
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHh---CCHHHHHHHHhCCC
Confidence 4455666665544321 11233344445 78888877777654
No 323
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.81 E-value=2.5e+02 Score=22.58 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=33.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHH
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-----VEEGLHLFDNMKS 348 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~ 348 (482)
.+..+++.|+-.+-+|++.|..|....-..++.+.-..|. ...|...++....
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~ 75 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTR 75 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 3557889999999999988877665555555555544332 3344444554444
No 324
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.64 E-value=1.5e+02 Score=20.10 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhcCChHHH
Q 011587 236 GACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIHGKGNEA 304 (482)
Q Consensus 236 a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 304 (482)
...+++.+.+.|+. +..-+..+.. .....++|..+++.+...+..+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vl---t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL---TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS---CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC---CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34566777777752 3332232222 356778888888888888888888888888777654433
No 325
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.43 E-value=1.2e+02 Score=26.84 Aligned_cols=220 Identities=15% Similarity=0.096 Sum_probs=106.2
Q ss_pred CcCHHHHHHHHHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCH-HHHHHHH
Q 011587 214 KPTDTTMVCVLSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNV-LTWTAMA 292 (482)
Q Consensus 214 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li 292 (482)
..|..-.+.|..++ ..|+.+.+..++ +.|..+......-.+.+...+..|+.+-+.-+++.-...+. .-++ .+
T Consensus 15 ~~d~~g~t~L~~Aa-~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L 88 (364)
T 3ljn_A 15 KSDDENMEKIHVAA-RKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK-PI 88 (364)
T ss_dssp -CCHHHHHHHHHHH-HHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HH
T ss_pred ccCCCCCCHHHHHH-HcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC-HH
Confidence 34555555554444 557766555444 45542211111112345556677888888888776654332 1222 23
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--------------------HHHHHHHHHHhccC--cHHHHHHHHHHhHHhc
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNA--------------------VTFTSLFAACCHAG--LVEEGLHLFDNMKSKW 350 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~ 350 (482)
...+..|+.+-+..+++.....|..|+. .-.+.|..+ +..| +.+-+..+++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~~~~v~~Ll~~----- 162 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC-VGLGPEYLEMIKILVQL----- 162 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHH-HHSCGGGHHHHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHH-HHcCCchHHHHHHHHHc-----
Confidence 3345678887777777765444444332 112333333 4445 55444443332
Q ss_pred CCCcCHHH--HHHHHHHHhccCCHHHHHHHHHcCC------CC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCc
Q 011587 351 GVEPHIKH--YSCIVDLLGRAGHLEEAYNFIMGIP------IK-PDAILWRSLLSACNVHGDVALGEKVGKILLQLQPEV 421 (482)
Q Consensus 351 ~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~------~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 421 (482)
|..++... -.+.+...+..|+.+-+..+++.-. +. .+..-.+.| ...+..|..+ +++.+++.|.++
T Consensus 163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~gad~ 237 (364)
T 3ljn_A 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMGIDV 237 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTTCCT
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcCCCC
Confidence 44443211 1122344456788877777776431 11 122222222 3345667754 444455566543
Q ss_pred ccccccCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 011587 422 TFVDVACTSEDFVALSNIYASAERWPDVESVRKQ 455 (482)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (482)
.. .+..-.+.| ...++.|+.+-+..+++.
T Consensus 238 ~~----~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 238 NM----EDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TC----CCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CC----CCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 21 222222222 333456777777666665
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.41 E-value=1.6e+02 Score=27.91 Aligned_cols=26 Identities=8% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHh
Q 011587 321 VTFTSLFAACCHAGLVEEGLHLFDNM 346 (482)
Q Consensus 321 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 346 (482)
..++.++..|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34455555555555555555555544
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.15 E-value=2.1e+02 Score=21.58 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=43.4
Q ss_pred HHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
-+.+.+.|.++ + ..=..++..+...+ . .-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 15 ~~~l~~~g~r~-T-~qR~~IL~~l~~~~-~--~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 15 RMSIKKNGLKN-S-KQREEVVSVLYRSG-T--HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHCC--C-H-HHHHHHHHHHHHCS-S--CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCC-C-HHHHHHHHHHHhCC-C--CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 34466777664 2 33445666666655 5 77899999999888766677777777888888876543
No 328
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.78 E-value=3.4e+02 Score=23.76 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccC
Q 011587 131 IHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQM 170 (482)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 170 (482)
+++.+.+.|+.|...++.=++..+.+.=.++.+..+++.+
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444433
No 329
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=25.72 E-value=2e+02 Score=25.33 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHH---hccCCHHHHHHHHHcC
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLL---GRAGHLEEAYNFIMGI 382 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~ 382 (482)
++++.+.+.|+.|...++..++..+++.=.++.+.++|+.+... |...-.....+++..+ .-..++++...+++.+
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e-g~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD-GEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 35566778899999999999999999888999999999999984 6321111111222211 1123567777777766
Q ss_pred C
Q 011587 383 P 383 (482)
Q Consensus 383 ~ 383 (482)
+
T Consensus 293 p 293 (334)
T 2qq8_A 293 P 293 (334)
T ss_dssp C
T ss_pred C
Confidence 4
No 330
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.17 E-value=2.3e+02 Score=22.97 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccCc-----hHHHHHHHHHHHHhCC
Q 011587 174 SSATWNAMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLGL-----LEFGACVHGYMEKTFY 248 (482)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 248 (482)
+...+-.+|+++.++-+ ..+++.|+-.+-+|. +.|..|.-..-..++-+.-..|. ...|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiR--GSDpDAALywLaRMl--~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIR--GSDPDATLYWLANMV--EAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHH--TTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33344455666666433 678888999999998 88877876666666666655553 2345555566666664
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.02 E-value=1.2e+02 Score=22.77 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccCC
Q 011587 310 SMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAGH 371 (482)
Q Consensus 310 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 371 (482)
.+.+.|.+++..-. .++..+...+ .-.|.++++.+.++ +...+..|.-.-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCc
Confidence 44556666554432 2344444444 55677777777664 445555555555555555553
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.87 E-value=2.7e+02 Score=22.40 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=21.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 297 IHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 297 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
+..+++.|+-.+-+|.+.| .|....-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4467777777777777777 554444444444443333
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.61 E-value=1.1e+02 Score=22.50 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=18.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 011587 293 TGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCH 332 (482)
Q Consensus 293 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 332 (482)
..+...+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e 57 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS 57 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3333344444555555555554444444444444444443
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.39 E-value=75 Score=19.73 Aligned_cols=34 Identities=6% Similarity=0.095 Sum_probs=21.5
Q ss_pred CccHHHHHHHHHHCCCCCCChhhHHHHHHHh-hhcc
Q 011587 86 PQDSVLVFAYWVSKGLLTFDDFTYVFALGSC-ARFC 120 (482)
Q Consensus 86 ~~~a~~~~~~m~~~~~~p~~~~~~~~ll~~~-~~~~ 120 (482)
.++|.+.|.+|++..-.+ +..||..+++.+ +...
T Consensus 2 ~eEae~aF~~lL~~~~V~-s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVD-STWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCC-SSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCC-CCCcHHHHHHHhccCCC
Confidence 356777777776654444 666777777777 4433
No 335
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=24.32 E-value=1.1e+02 Score=18.05 Aligned_cols=16 Identities=13% Similarity=0.055 Sum_probs=7.4
Q ss_pred ccHHHHHHHHHHCCCC
Q 011587 87 QDSVLVFAYWVSKGLL 102 (482)
Q Consensus 87 ~~a~~~~~~m~~~~~~ 102 (482)
.+|+++++.+...|-.
T Consensus 10 ~RaiELle~lq~sgev 25 (53)
T 1zl8_A 10 QRILELMEHVQKTGEV 25 (53)
T ss_dssp HHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3444555555444433
No 336
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.12 E-value=4.4e+02 Score=24.59 Aligned_cols=106 Identities=9% Similarity=-0.020 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 011587 231 GLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMRE---KNVLTWTAMATGMAIHGKGNEAIRL 307 (482)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 307 (482)
.+.+.|.++ +.+.|+ +.-...|..-.+.+...|++++|-++--..+. ++..|.+.+-..=...|+..-.+.+
T Consensus 343 ~n~~lA~~l---A~R~~L--pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNL--AGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHH---HHHTTC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHH---HHhcCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 444444433 344555 44455566666777777777777777665554 3444444443333334555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 011587 308 LDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHL 342 (482)
Q Consensus 308 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 342 (482)
|..+.+.|- .+..----+++.-...|+.+-.+++
T Consensus 418 F~~Ll~~g~-Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 418 FGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccCc-cchHHhhHHhHHHHhccHHHHHHHH
Confidence 555555542 2333223344444445554444433
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.05 E-value=2.9e+02 Score=22.43 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=36.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-----HHHHHHHHHHhHHhcCCCcC
Q 011587 296 AIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-----VEEGLHLFDNMKSKWGVEPH 355 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 355 (482)
.+..+++.|+-.+-+|++.|..|....-..++.+.-..|. ...|...++.... .|.+-.
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~-iG~PE~ 109 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDR-VGFPEG 109 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHH-HCTTTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-hCCCHH
Confidence 3557888888888888888877665555555555444332 3344555555555 355433
No 338
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.92 E-value=3.6e+02 Score=23.52 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=65.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHH----HhccCCHHHHHHHHHc
Q 011587 306 RLLDSMRDCGVKPNAVTFTSLFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDL----LGRAGHLEEAYNFIMG 381 (482)
Q Consensus 306 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~ 381 (482)
++++.+.+.|+.|...++..++..+++.=.++.+.++|+.+... |...-.....+++.. ..+..++++..++++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 56667788899999999999999999888899999999999985 654222222223322 2345688888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 011587 382 IPIKPDAILWRSLLSACNVHGD 403 (482)
Q Consensus 382 ~~~~p~~~~~~~l~~~~~~~g~ 403 (482)
..-..+......++.-......
T Consensus 288 ~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 288 TLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp TTTCCCHHHHHHHHHHHHHCCC
T ss_pred hCCCCCHHHHHHHHHHHHhCCc
Confidence 5212344555555554444443
No 339
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=22.89 E-value=1.1e+02 Score=18.17 Aligned_cols=29 Identities=7% Similarity=-0.050 Sum_probs=17.4
Q ss_pred CCCCCChhhHHHHHHHhccCcchHHHHHH
Q 011587 1 MLSLPGHRCFALLKLKAITTPSHIKQIHA 29 (482)
Q Consensus 1 ~~~~p~~~~~~~~l~~~~~~~~~~~~i~~ 29 (482)
|.|.-+..+..++|..+.|+.+.|..++=
T Consensus 14 MFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 14 MFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44555666666666666566666655543
No 340
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.84 E-value=1.1e+02 Score=18.92 Aligned_cols=34 Identities=0% Similarity=-0.103 Sum_probs=18.2
Q ss_pred CCCChhhHHHHhcC--CCCccHHHHHHHHHHCCCCC
Q 011587 70 DPPNLFLFNTLIRC--TPPQDSVLVFAYWVSKGLLT 103 (482)
Q Consensus 70 ~~~~~~~~~~ll~~--~~~~~a~~~~~~m~~~~~~p 103 (482)
+.-+...-...+.+ |+.+.|+..+-.|...+..|
T Consensus 21 P~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 21 PNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp SSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCC
Confidence 34444444445544 66666666666665544444
No 341
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.73 E-value=2.6e+02 Score=22.44 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=28.9
Q ss_pred HHHHHHhcCCcccccchHHHHHHHHHhhhccCCCCcCHHHHHHHHHHhhccC
Q 011587 180 AMINGYCSQSKKAKDCAFNALVLFRDMLVDVSGVKPTDTTMVCVLSVSSQLG 231 (482)
Q Consensus 180 ~li~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l~~~~~~~~ 231 (482)
.+|+++.++-+ ..+++.|+-.+-+|. +.|..|.-..-..++-+.-..|
T Consensus 9 d~ISAf~KSiR--GSDpDAAly~LaRMl--~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVR--GSAPDAALYWYARIL--TAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554333 567777777777777 7776665555555555554444
No 342
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.63 E-value=5.6e+02 Score=25.22 Aligned_cols=214 Identities=13% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHhhccCchHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCCCHHHHHHHHHHHHhc---CC
Q 011587 224 LSVSSQLGLLEFGACVHGYMEKTFYMPENDVFIGTALVDMYSKCGCLDNALLIFSRMREKNVLTWTAMATGMAIH---GK 300 (482)
Q Consensus 224 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~ 300 (482)
...+.-.|+++.|..++... . ..+..++...+.-|.-.+- ...++..-......-+..||..|.+. .+
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~--~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----S--EMDAVHLAIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSD 371 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----C--HHHHHHHHHHHHHTTC--------------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHhhHHHHHHHHHhc----C--chhHHHHHHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCC
Q ss_pred hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCcHHHHH-----------HHHHHhHHhcCCCcCH------HHHHHH
Q 011587 301 GNEAIRLLDSMRDCG-VKPNAVTFTSLFAACCHAGLVEEGL-----------HLFDNMKSKWGVEPHI------KHYSCI 362 (482)
Q Consensus 301 ~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~------~~~~~l 362 (482)
+..|.++|--+-..+ ..-....+.++-......++++.-. -++++... -+..+. ......
T Consensus 372 ~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~--li~l~d~~~~~~~i~~~a 449 (661)
T 2qx5_A 372 PRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQP--LLHVRDEKEFLHTITEQA 449 (661)
T ss_dssp HHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCG--GGTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhc--ccccccHHHHHHHHHHHH
Q ss_pred HHHHhccCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCC----------------HhHHHHHHHH-------HHhcC
Q 011587 363 VDLLGRAGHLEEAYNFIMGI-PIKPDAILWRSLLSACNVHGD----------------VALGEKVGKI-------LLQLQ 418 (482)
Q Consensus 363 i~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~----------------~~~a~~~~~~-------~~~~~ 418 (482)
..-+...|++++|..+|+-. ...-=..+.|.++.-....-+ ...|.++.+. -.+..
T Consensus 450 A~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~ 529 (661)
T 2qx5_A 450 ARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIH 529 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSC
T ss_pred HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhcc
Q ss_pred CCcccccccCCchhHHHHHHH-----HHhCCCchHHHHHHHHh
Q 011587 419 PEVTFVDVACTSEDFVALSNI-----YASAERWPDVESVRKQM 456 (482)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 456 (482)
. .+..|+..|+.. +...|+|+.|.+.++++
T Consensus 530 ~--------~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 530 V--------KNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.50 E-value=2e+02 Score=20.00 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCc-HHH-HHHHHHHhHHhcCCCcCHHHHHHH
Q 011587 303 EAIRLLDSMRDCGVKPNAVTFTSLFAACCHAGL-VEE-GLHLFDNMKSKWGVEPHIKHYSCI 362 (482)
Q Consensus 303 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~l 362 (482)
.|.++.+++...|+.|+..+...++..|...+- .++ +.+++.--....|..|+....+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 456666677777777777777777766654443 111 222222222234667776665544
No 344
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.50 E-value=6.5e+02 Score=25.93 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=41.4
Q ss_pred HHHHHhhccCchH---HHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHcCCChHHHHHHHHhccCC-CHHHHHHHHHHH
Q 011587 222 CVLSVSSQLGLLE---FGACVHGYMEKTFY--MPENDVFIGTALVDMYSKCGCLDNALLIFSRMREK-NVLTWTAMATGM 295 (482)
Q Consensus 222 ~l~~~~~~~~~~~---~a~~~~~~~~~~~~--~p~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~ 295 (482)
.++...|..|..+ .|.+.|+.....+- ..+++.. ..+...-.+.|..++-..+++..... +..--..++.++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL 768 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 4555566666543 44555555444321 0022222 22223333445544444444444432 233334555666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 011587 296 AIHGKGNEAIRLLDSMRD 313 (482)
Q Consensus 296 ~~~~~~~~a~~~~~~m~~ 313 (482)
+...+.....++++....
T Consensus 769 ~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp TTCCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 666666666666655544
No 345
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.43 E-value=2.4e+02 Score=21.64 Aligned_cols=70 Identities=7% Similarity=0.030 Sum_probs=45.5
Q ss_pred cHHHHHHH-HHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCChhH
Q 011587 88 DSVLVFAY-WVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKR--GFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 88 ~a~~~~~~-m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
.+++-+.. +.+.|.++ +. .=..++..+...+ . .-.|.++++.+.+. +...+..|.-.-++.+...|-+.+
T Consensus 15 ~~~~~~~~~L~~~g~r~-T~-qR~~IL~~L~~~~-~--h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 15 VLLERFKKILRQGGLKY-TK-QREVLLKTLYHSD-T--HYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHTCCC-CH-HHHHHHHHHHSCC-S--CBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHhCC-C--CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34443433 45567665 33 3455666666665 5 77889999999887 666677666667778888876543
No 346
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.38 E-value=1.6e+02 Score=26.70 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHH
Q 011587 394 LLSACNVHGDVALGEKVGKILL 415 (482)
Q Consensus 394 l~~~~~~~g~~~~a~~~~~~~~ 415 (482)
+...|...|+.+.|...++++.
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3344445555555555555544
No 347
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.34 E-value=1.3e+02 Score=19.14 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCcccccccCCchhHHHHHHHHHhCCC
Q 011587 390 LWRSLLSACNVHGDVALGEKVGKILLQLQPEVTFVDVACTSEDFVALSNIYASAER 445 (482)
Q Consensus 390 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (482)
.++.++..++...-.+.+.-.+.++.+.|. .+...|.--++.+++..-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~--------I~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT--------IPLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHHHH
Confidence 467788888888889999999999999998 888888877777776543
No 348
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.18 E-value=1.9e+02 Score=19.60 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhHHHHHhccCCCCCchhHHHHHHHHhc
Q 011587 128 GRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISSGKKVFDQMPMRSSATWNAMINGYCS 187 (482)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 187 (482)
...+++.+.+.|+- +..-+..+-. .....+.|..+++.++.++..+|..++.++..
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34566666665533 2222222222 24566667777777776677777777777666
No 349
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.06 E-value=1.2e+02 Score=25.11 Aligned_cols=56 Identities=7% Similarity=0.019 Sum_probs=34.3
Q ss_pred HHHHHHhc-cCcchHHHHHHHHHHhcCCCCchH-------HHHHHHHHh--cCCCCCChHHHHHHhhcC
Q 011587 11 ALLKLKAI-TTPSHIKQIHAQLITNALKSPPLY-------AQLIQLYCT--KKASPQSTKIVHFVFTHF 69 (482)
Q Consensus 11 ~~~l~~~~-~~~~~~~~i~~~~~~~g~~~~~~~-------~~~l~~~~~--~~~~~~~~~~a~~~~~~~ 69 (482)
..+..++. |+.+..+.+++.+.+.|...+... .+.|..+.. +. |+.+.+..+++..
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~---g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA---GRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT---TBCTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc---CCHHHHHHHHHhc
Confidence 34445544 888888888888888876666332 133333321 45 7777777766654
No 350
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=22.05 E-value=1.3e+02 Score=24.75 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCC----------CCHHHHHHHHHHHHhcC---------CHhHHHHHHHHHHhcCCCcccccccCCchh
Q 011587 372 LEEAYNFIMGIPIK----------PDAILWRSLLSACNVHG---------DVALGEKVGKILLQLQPEVTFVDVACTSED 432 (482)
Q Consensus 372 ~~~A~~~~~~~~~~----------p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (482)
.+.|..++.+||.. ....-|..+..+|.+.| +.+.-..+++..++.|.+ +.=++.
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~------~viPHI 220 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVS------KIIPHI 220 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCS------CBCCBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCC------eecccc
Confidence 57788888888311 24567788888998877 567778888888888884 234667
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHh
Q 011587 433 FVALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
|.++++--.-.-+.++..+++..+++
T Consensus 221 YssIIDk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 221 YSSIIDKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp CGGGBCTTTCCBCHHHHHHHHHHHHH
T ss_pred cceeccCCCCCCCHHHHHHHHHHHHH
Confidence 77888655555577888888887764
No 351
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.96 E-value=1.7e+02 Score=21.94 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=24.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 291 MATGMAIHGKGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 291 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444 5567777777776665556665555555555544
No 352
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.94 E-value=2.4e+02 Score=20.74 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=24.1
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 011587 290 AMATGMAIHG-KGNEAIRLLDSMRDCGVKPNAVTFTSLFAACCHAG 334 (482)
Q Consensus 290 ~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 334 (482)
.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444 45566666666666655555555555555554444
No 353
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=21.73 E-value=2e+02 Score=21.74 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=7.1
Q ss_pred CChHHHHHHhhcC
Q 011587 57 QSTKIVHFVFTHF 69 (482)
Q Consensus 57 ~~~~~a~~~~~~~ 69 (482)
|+.+.+..+++..
T Consensus 58 ~~~~~v~~Ll~~g 70 (169)
T 2y1l_E 58 GHLEIVEVLLKNG 70 (169)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcC
Confidence 5555555555543
No 354
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=21.69 E-value=4.1e+02 Score=23.77 Aligned_cols=14 Identities=0% Similarity=-0.005 Sum_probs=7.7
Q ss_pred CChHHHHHHhhcCC
Q 011587 57 QSTKIVHFVFTHFD 70 (482)
Q Consensus 57 ~~~~~a~~~~~~~~ 70 (482)
|+.+.+..+++...
T Consensus 103 G~~e~v~~Ll~~ga 116 (376)
T 2aja_A 103 GCSSALDTLCLLLT 116 (376)
T ss_dssp CCHHHHHHHTTC--
T ss_pred CCHHHHHHHHHcCC
Confidence 66666666665543
No 355
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.62 E-value=91 Score=21.59 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=20.9
Q ss_pred CChhHHHHHhccCCCCCchhHHHHHHHHhc
Q 011587 158 KDISSGKKVFDQMPMRSSATWNAMINGYCS 187 (482)
Q Consensus 158 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 187 (482)
...+.|.++++.++.+...+|..++.++..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 356677777777777777777777777765
No 356
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.31 E-value=1e+02 Score=23.03 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=19.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCcCHHHHHHHHHHHhccC
Q 011587 326 LFAACCHAGLVEEGLHLFDNMKSKWGVEPHIKHYSCIVDLLGRAG 370 (482)
Q Consensus 326 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 370 (482)
++..+...+..-.|.++++.+.++ +...+..|...-++.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCC
Confidence 333333333444455555555442 33344444444444444444
No 357
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.01 E-value=4.5e+02 Score=23.48 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccC
Q 011587 258 TALVDMYSKCGCLDNALLIFSRMRE 282 (482)
Q Consensus 258 ~~li~~~~~~g~~~~A~~~~~~~~~ 282 (482)
..++.-|...|+.++|...++++..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 3444555555555555555555543
No 358
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.97 E-value=1.5e+02 Score=22.07 Aligned_cols=50 Identities=6% Similarity=0.064 Sum_probs=37.3
Q ss_pred HHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 110 VFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 110 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
..++..+...+ . .-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 17 ~~Il~~L~~~~-~--h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVE-E--FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCS-S--CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCC-C--CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45666666655 5 77899999999888766777777777888888886544
No 359
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.78 E-value=2.5e+02 Score=24.80 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=38.2
Q ss_pred HHHHHHCCCCCCChhhHHHHHHHhhhccCcchhhhHHHHHHHHHHhCCCCc-hh--HHHHHHHH----HHhCCChhHHHH
Q 011587 93 FAYWVSKGLLTFDDFTYVFALGSCARFCSLSTLWLGRQIHVHVTKRGFMFN-VL--VATTLIHF----YASNKDISSGKK 165 (482)
Q Consensus 93 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~--~~~~l~~~----~~~~g~~~~A~~ 165 (482)
+..+.+.|+.| ...++.-++..+++.- . ++.+..+++.+...|.... .. +..+++.. .....++++...
T Consensus 232 ~~hL~~~~i~~-~~f~~~W~~~lF~~~~-p--~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~ 307 (345)
T 2qfz_A 232 HRHLDQHEVRY-LQFAFRWMNNLLMREV-P--LRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLL 307 (345)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHTTTTTTS-C--HHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHH
T ss_pred HHHHHHcCCch-hhHHHHHHHHHHcccC-C--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 33344455555 5556666666666555 5 6666666666665543322 11 11122211 123456666666
Q ss_pred HhccCCC
Q 011587 166 VFDQMPM 172 (482)
Q Consensus 166 ~~~~~~~ 172 (482)
+++.++.
T Consensus 308 ~L~~~p~ 314 (345)
T 2qfz_A 308 FLQNLPT 314 (345)
T ss_dssp HHTSCSC
T ss_pred HHHcCCC
Confidence 6666554
No 360
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.47 E-value=1.9e+02 Score=21.11 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=35.5
Q ss_pred HHHHHhhhccCcchhhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhH
Q 011587 111 FALGSCARFCSLSTLWLGRQIHVHVTKRGFMFNVLVATTLIHFYASNKDISS 162 (482)
Q Consensus 111 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 162 (482)
.++..+...+ . .-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 15 ~Il~~l~~~~-~--~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLD-D--FRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCC-S--CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCC-C--CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4555665555 5 77889999999888766677777777888888876543
No 361
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.26 E-value=1.1e+02 Score=16.25 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHh
Q 011587 435 ALSNIYASAERWPDVESVRKQMKV 458 (482)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (482)
..+..|.+.|..++|..+-.+|+.
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 467888999999999999888763
Done!