Query 011588
Match_columns 482
No_of_seqs 319 out of 1562
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 9.1E-46 2E-50 376.2 23.1 264 81-347 19-285 (317)
2 KOG1470 Phosphatidylinositol t 100.0 6.8E-39 1.5E-43 320.0 19.7 206 106-338 48-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.1E-30 2.5E-35 237.7 9.5 157 155-321 2-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 3E-28 6.4E-33 221.6 14.7 154 156-323 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.9E-25 8.4E-30 198.4 14.7 145 164-321 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 6.3E-14 1.4E-18 127.2 2.6 139 164-324 6-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.7 1.5E-08 3.3E-13 76.9 5.2 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.1 1E-05 2.2E-10 83.6 9.8 125 167-312 89-213 (467)
9 PF14555 UBA_4: UBA-like domai 77.4 8 0.00017 27.6 5.4 36 86-130 2-37 (43)
10 PF02845 CUE: CUE domain; Int 64.9 22 0.00048 25.0 5.3 38 86-131 3-40 (42)
11 smart00546 CUE Domain that may 58.6 28 0.00061 24.6 4.9 37 86-130 4-40 (43)
12 COG4479 Uncharacterized protei 39.1 78 0.0017 25.4 4.9 52 85-136 18-72 (74)
13 KOG1838 Alpha/beta hydrolase [ 35.0 3E+02 0.0064 29.6 10.1 90 168-282 121-216 (409)
14 PRK14136 recX recombination re 28.2 44 0.00096 34.3 2.5 24 108-131 278-301 (309)
15 smart00804 TAP_C C-terminal do 28.0 2.9E+02 0.0063 21.5 6.8 46 79-133 7-52 (63)
16 PRK11613 folP dihydropteroate 26.7 6.9E+02 0.015 25.4 12.2 43 221-264 175-217 (282)
17 PRK00117 recX recombination re 26.3 61 0.0013 29.4 2.9 24 109-132 130-153 (157)
18 PRK12822 phospho-2-dehydro-3-d 25.5 2.2E+02 0.0048 29.9 7.0 84 159-253 204-287 (356)
19 PRK09261 phospho-2-dehydro-3-d 24.3 4.2E+02 0.0091 27.9 8.9 67 160-237 205-272 (349)
20 TIGR00034 aroFGH phospho-2-deh 24.1 1.4E+02 0.0031 31.2 5.4 68 159-237 199-266 (344)
21 PRK12756 phospho-2-dehydro-3-d 23.4 2.4E+02 0.0053 29.5 6.9 84 159-253 203-286 (348)
22 PF11964 SpoIIAA-like: SpoIIAA 22.7 4.1E+02 0.009 21.7 7.3 75 192-285 12-87 (109)
23 cd00194 UBA Ubiquitin Associat 21.4 1.4E+02 0.0031 20.0 3.4 21 109-129 16-36 (38)
24 PF04378 RsmJ: Ribosomal RNA s 20.0 72 0.0016 31.8 2.2 28 262-289 204-231 (245)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-46 Score=376.16 Aligned_cols=264 Identities=47% Similarity=0.774 Sum_probs=240.4
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHHHhcc
Q 011588 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYY 160 (482)
Q Consensus 81 d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~ev~k~~ 160 (482)
++.+.+.++++| |+..+++++...+|+++|||||||++||+++|+++|.+++.||++++.+.+..+ .....++.+++
T Consensus 19 ~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~--~~~~~~~~~~~ 95 (317)
T KOG1471|consen 19 TESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED--FEEDDELLKYY 95 (317)
T ss_pred cHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc--cccchhhhhhc
Confidence 356677777887 998999999755555799999999999999999999999999999999999876 23344556688
Q ss_pred ccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCc
Q 011588 161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240 (482)
Q Consensus 161 p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~ 240 (482)
|++++|+|++|+||++.+.|..+...++..+...++.++++..+|+.+..+++.|.....++++|+++|+|++|+++.++
T Consensus 96 ~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~ 175 (317)
T KOG1471|consen 96 PQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHL 175 (317)
T ss_pred cccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999988877889999999999999999999
Q ss_pred chhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCccccCC
Q 011588 241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGG 320 (482)
Q Consensus 241 ~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP~~yGG 320 (482)
...+..+++.++.++|+||||+++++||||+|++|+++|++++|||+++|++||++++.++.+.|+++|+++.||.+|||
T Consensus 176 ~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG 255 (317)
T KOG1471|consen 176 LKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGG 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCC
Confidence 99999999999999999999999999999999999999999999999999999997777788999999999999999999
Q ss_pred CcCCC---CCCCCccCCCCCCCCHHHHHHH
Q 011588 321 TCNCA---DQGGCLRSDKGPWQNPEILKMV 347 (482)
Q Consensus 321 ~~~~~---~~ggc~~~~~~~W~dp~~~k~v 347 (482)
+|.+. ..++|..++.++|.++.+.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (317)
T KOG1471|consen 256 TCGDLDDPNGGGCDLSDEGPWKEPEIKKGK 285 (317)
T ss_pred CccccccccCCcCccccccccccccccccc
Confidence 99996 3577999999999888665433
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6.8e-39 Score=320.03 Aligned_cols=206 Identities=31% Similarity=0.507 Sum_probs=181.1
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHHHhccccccccCCCCCCcEEEEeccccCcc
Q 011588 106 DDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSN 185 (482)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~ 185 (482)
+| .++||||||+|||+++|.+||.++|.||+.+++...+ ...++...++.+.+++.|+|++||||+|+++....++
T Consensus 48 ~d-~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn 123 (324)
T KOG1470|consen 48 SD-ACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYILGHDKDGRPVLYLRPRPHRQN 123 (324)
T ss_pred cH-HHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEEecccCCCCeEEEEecCCCCCC
Confidence 45 6999999999999999999999999999999987722 2345666778899999999999999999966544444
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCcchhHHHHHHHHHHHhcccccccccE
Q 011588 186 KLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQ 265 (482)
Q Consensus 186 kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~ 265 (482)
. .+.+++.+++|++||.++..+. ..++++++++|++|++++|.+ ..+.+.+++++|+||||||+.
T Consensus 124 ~----~t~~~~~r~~Vy~mE~Ai~~lp--------~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg~ 188 (324)
T KOG1470|consen 124 T----KTQKELERLLVYTLENAILFLP--------PGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLGK 188 (324)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhCC--------CCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhhh
Confidence 3 4899999999999999998754 357889999999999999887 789999999999999999999
Q ss_pred EEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCccccCCCcCCCCCCCCccCCCCCC
Q 011588 266 MFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPW 338 (482)
Q Consensus 266 i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP~~yGG~~~~~~~ggc~~~~~~~W 338 (482)
.+|+|+||+|..+|++++|||||+|++||.|..+ .+.|.++||+++||..|||+..+.| .+..+|
T Consensus 189 a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~--~~~l~~~~d~~~l~s~~GG~~~~~y------~~e~~~ 253 (324)
T KOG1470|consen 189 ALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP--KDDLSEYFDESQLPSLFGGKLLFEY------THEEYW 253 (324)
T ss_pred hhhcCChHHHHHHHHHhhhccChhhhceeEEecC--hhHHHhhCCccccchhhCCCccccc------CCcchh
Confidence 9999999999999999999999999999999976 3569999999999999999888866 344577
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=1.1e-30 Score=237.73 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=130.9
Q ss_pred HHHhccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCC
Q 011588 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (482)
Q Consensus 155 ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G 234 (482)
++.+.++.+++|+|++||||+|+++|++|+.+ .+.+++++++++.+|.+++...+ ..++.|+++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 46788999999999999999999999999985 46899999999999999875221 357899999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCc-cchHHHHhccCCCC
Q 011588 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 313 (482)
Q Consensus 235 ~sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~-~~~~~L~e~Id~~~ 313 (482)
++++++.....++++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+++++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999965 55578999999999
Q ss_pred CccccCCC
Q 011588 314 LPEFLGGT 321 (482)
Q Consensus 314 LP~~yGG~ 321 (482)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.96 E-value=3e-28 Score=221.57 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=139.1
Q ss_pred HHhccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCC
Q 011588 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (482)
Q Consensus 156 v~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~ 235 (482)
...+.++++ |+|++||||+|+++++++++. .+.+++++++++.+|.++... ....++.++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 445667776 999999999999999998765 589999999999999988641 135678999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCc
Q 011588 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (482)
Q Consensus 236 sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP 315 (482)
+++++. .++++.++++++++||++++++||||+|++++++|+++++||++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999865 78999999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred cccCCCcC
Q 011588 316 EFLGGTCN 323 (482)
Q Consensus 316 ~~yGG~~~ 323 (482)
.+|||++.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999973
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.93 E-value=3.9e-25 Score=198.40 Aligned_cols=145 Identities=39% Similarity=0.621 Sum_probs=129.0
Q ss_pred cccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCcchh
Q 011588 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (482)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~~~~ 243 (482)
..|.|++||||++++++..++... ...+++++++++.+|.++.... ....|+++|+|++|+++.++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~-~ 80 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL-P 80 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-h
Confidence 345699999999999997666543 2448999999999999987532 223799999999999999986 6
Q ss_pred HHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCccccCCC
Q 011588 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (482)
Q Consensus 244 ~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP~~yGG~ 321 (482)
..+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 689999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.41 E-value=6.3e-14 Score=127.17 Aligned_cols=139 Identities=20% Similarity=0.340 Sum_probs=95.0
Q ss_pred cccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCcchh
Q 011588 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (482)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~~~~ 243 (482)
..|+|++||||+++....+ ++. ...+.++.|++..++... ...+.++|+|+.|.+..+. +
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~-------------~~~~f~vVid~~~~~~~~~--~ 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV-------------VDKPFSVVIDHTGFSRSSE--P 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT-------------TTS-EEEEEE-TT--GGG----
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh-------------cCCCEEEEEEcCCCccccC--C
Confidence 4589999999999997777 332 256667777666552111 1356999999999987543 2
Q ss_pred HHHHHHHHHHHhcccccccccEEEEEecChHHHHHH-HHHHhcCChhh-hcceEEcCccchHHHHhccCCCCCccccCCC
Q 011588 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (482)
Q Consensus 244 ~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw-~lvkpFLd~kT-r~KI~~lg~~~~~~L~e~Id~~~LP~~yGG~ 321 (482)
....++++.+.+...|+..|+++||||++++++.++ .+.+++++.+. ..||.++.+ .++|.++||+++||..+||+
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HH
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCE
Confidence 468899999999999999999999999999999999 55567789998 999999876 68999999999999999988
Q ss_pred cCC
Q 011588 322 CNC 324 (482)
Q Consensus 322 ~~~ 324 (482)
...
T Consensus 144 ~~~ 146 (149)
T PF13716_consen 144 LQY 146 (149)
T ss_dssp H--
T ss_pred Eec
Confidence 765
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.74 E-value=1.5e-08 Score=76.92 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (482)
Q Consensus 85 ~~~l~~fR~~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (482)
+++|++|++.|... ......++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999874 344556677 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.14 E-value=1e-05 Score=83.59 Aligned_cols=125 Identities=22% Similarity=0.298 Sum_probs=97.9
Q ss_pred CCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCcchhHHH
Q 011588 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (482)
Q Consensus 167 ~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~~~~~~~ 246 (482)
.|++||+|+++-..++-+..- ..-.++++|.++.++..++. + .++++=-.|+...+.. .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~-------------D-Yt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN-------------D-YTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc-------------c-ceeeehhcCCcccccc--hHH
Confidence 699999999998888765541 12233899999999998864 1 5666666676665543 466
Q ss_pred HHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCC
Q 011588 247 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAR 312 (482)
Q Consensus 247 lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~ 312 (482)
++....+-+-.+|--.++.+|+|.+-|+.+++|++++||++.|...||+-+.. .++|.++|.-+
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~--lseL~~~l~l~ 213 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS--LSELFEALKLN 213 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh--HHHHHHhhhhh
Confidence 66666666667899999999999999999999999999999999999998844 68888877633
No 9
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=77.37 E-value=8 Score=27.55 Aligned_cols=36 Identities=17% Similarity=0.410 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011588 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 86 ~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (482)
+.|.+|....- .++ .....||.+.+||++.|+..+-
T Consensus 2 e~i~~F~~iTg--------~~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG--------ADE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH---------SSH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC--------cCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 57888887772 133 4789999999999999998764
No 10
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=64.89 E-value=22 Score=25.02 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 86 ~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
+.|+++++.. |. .+. ..+..-|.++++|++.|+.+|-+
T Consensus 3 ~~v~~L~~mF------P~-~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------PD-LDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------SS-S-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567777665 32 344 47999999999999999998754
No 11
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=58.56 E-value=28 Score=24.55 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011588 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 86 ~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (482)
+.+++|++.. |. .+. ..+.+.|+++++|++.|+..|.
T Consensus 4 ~~v~~L~~mF------P~-l~~-~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 4 EALHDLKDMF------PN-LDE-EVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 4566666655 33 334 4788999999999999998875
No 12
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.08 E-value=78 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.443 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARK---FDIDKAKHMWAEMLQWR 136 (482)
Q Consensus 85 ~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArk---fDvekA~~~l~~~l~WR 136 (482)
.....+|-+..-++...|...+|++.+-+||.-.. |++..--+.|++|+.|-
T Consensus 18 ~d~~~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 18 KDDKTELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred CChHHHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 34456666666677778999999999999998653 45555567788888774
No 13
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=34.97 E-value=3e+02 Score=29.60 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=64.3
Q ss_pred CCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCcch-----
Q 011588 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK----- 242 (482)
Q Consensus 168 Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~~~----- 242 (482)
|....|++++-+|.-. .+.+.|+++++....+ ..--++|++-.|++-..+..
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceee
Confidence 3456699999999743 3567899988754332 11346788988866544421
Q ss_pred -hHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHH
Q 011588 243 -NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282 (482)
Q Consensus 243 -~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lv 282 (482)
--.+-++.+++.+...||.+ +++.+-.+.+-.+++|-+
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHh
Confidence 12355788888999999998 889999998888888844
No 14
>PRK14136 recX recombination regulator RecX; Provisional
Probab=28.17 E-value=44 Score=34.30 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 108 ~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
..-+.|||..+.|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357799999999999988777753
No 15
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.04 E-value=2.9e+02 Score=21.53 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011588 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133 (482)
Q Consensus 79 ~~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l 133 (482)
..++.+.+.|.+|-..-. + +- .+-.++|...+||.++|.+.+.+..
T Consensus 7 ~~~~~q~~~v~~~~~~Tg---m-----n~-~~s~~cLe~~~Wd~~~Al~~F~~lk 52 (63)
T smart00804 7 TLSPEQQEMVQAFSAQTG---M-----NA-EYSQMCLEDNNWDYERALKNFTELK 52 (63)
T ss_pred CCCHHHHHHHHHHHHHHC---C-----CH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346777778888776542 2 22 4789999999999999999887643
No 16
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=26.74 E-value=6.9e+02 Score=25.38 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCCCCEEEEEeCCCCCCCCcchhHHHHHHHHHHHhccccccccc
Q 011588 221 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLH 264 (482)
Q Consensus 221 ~~v~g~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPerL~ 264 (482)
..+...-+|+|- |+++..-......+++.+-.+-.-.||-.++
T Consensus 175 ~GI~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg 217 (282)
T PRK11613 175 AGIAKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLPLLVG 217 (282)
T ss_pred cCCChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 356666899998 6777543345678888887776667886544
No 17
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=26.33 E-value=61 Score=29.41 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Q 011588 109 HMMLRFLKARKFDIDKAKHMWAEM 132 (482)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l~~~ 132 (482)
.-+.+||..++|+.+.+.+.|...
T Consensus 130 ~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 130 AKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhh
Confidence 468999999999999887777654
No 18
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.55 E-value=2.2e+02 Score=29.94 Aligned_cols=84 Identities=14% Similarity=0.056 Sum_probs=48.3
Q ss_pred ccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCC
Q 011588 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLK 238 (482)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~ 238 (482)
..||.+.|.|++|++.++.-.|+-|..-+++-.....|-...+......+.. .... -.++|||+.-+-.
T Consensus 204 ~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~~----------~~l~-~~vmVDcSH~NS~ 272 (356)
T PRK12822 204 RSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLHD----------EGLN-HRLIIDCSHGNSQ 272 (356)
T ss_pred cCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHHH----------CCCC-CcEEEECCCccCC
Confidence 4578888999999999999999888776655332223322333333333221 1122 4589999877643
Q ss_pred CcchhHHHHHHHHHH
Q 011588 239 NFSKNARELILRLQK 253 (482)
Q Consensus 239 ~~~~~~~~lik~i~k 253 (482)
.-...-..++..++.
T Consensus 273 K~~~~Q~~V~~~v~~ 287 (356)
T PRK12822 273 KVAKNQISVARELCD 287 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 322222344444444
No 19
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=24.33 E-value=4.2e+02 Score=27.87 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=41.1
Q ss_pred cccccccCCCCCCcEEEEeccccCcchhhhcc-CHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCC
Q 011588 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (482)
Q Consensus 160 ~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~-t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl 237 (482)
.||.+.|.|++|++.++.-.|+-|..-..+-. +...|-+..+......+.. . -...-+|+|++..+-
T Consensus 205 ~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k----------~-~l~~~v~VD~SH~ns 272 (349)
T PRK09261 205 APHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEK----------A-GLPPRIMIDCSHANS 272 (349)
T ss_pred CCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH----------c-CCCCCEEEECCCccc
Confidence 46778899999999999988887765544422 3334444444333333221 1 124568999987553
No 20
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=24.11 E-value=1.4e+02 Score=31.21 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=41.7
Q ss_pred ccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCC
Q 011588 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (482)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl 237 (482)
..||.+.|.+++|++.++...|+-|..-..+-.....|-+..+......++ +.+.. -.+|+|++..+-
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~----------~~~lp-~~vmVD~SH~ns 266 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLE----------KAGLP-PHLMIDFSHGNS 266 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHH----------HcCCC-CeEEEeCCCccc
Confidence 468888999999999999988887765444322223344444443333332 11222 358999987653
No 21
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.38 E-value=2.4e+02 Score=29.52 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=49.5
Q ss_pred ccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCC
Q 011588 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLK 238 (482)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~ 238 (482)
..||.+.|.+++|++.++.-.|+-|..-+++-.....|-...+......+. +.... -.++|||+.-+-.
T Consensus 203 ~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l~-~~imVDcSH~NS~ 271 (348)
T PRK12756 203 RASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLR----------EFDLP-EHLVVDFSHGNCQ 271 (348)
T ss_pred hCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHHHHHHHHH----------HCCCC-CcEEEECCCcccC
Confidence 457888899999999999999988877666533333343334433333332 11222 4588999876643
Q ss_pred CcchhHHHHHHHHHH
Q 011588 239 NFSKNARELILRLQK 253 (482)
Q Consensus 239 ~~~~~~~~lik~i~k 253 (482)
.-...-..+++.+..
T Consensus 272 K~~~~Q~~V~~~v~~ 286 (348)
T PRK12756 272 KQHRRQLDVAEDICQ 286 (348)
T ss_pred CCHHHHHHHHHHHHH
Confidence 322222344444444
No 22
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=22.75 E-value=4.1e+02 Score=21.74 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCC-CCCCCCcchhHHHHHHHHHHHhcccccccccEEEEEe
Q 011588 192 TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQ-GVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIIN 270 (482)
Q Consensus 192 t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~-G~sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVN 270 (482)
+.+++-+ ++..++..++ .-..+.+++|+. ++. .+. .+......++... +...+.++-||-
T Consensus 12 t~ed~~~-~~~~~~~~~~------------~~~~~~ll~d~~~~~~--~~~---~~a~~~~~~~~~~-~~~~~~r~AvV~ 72 (109)
T PF11964_consen 12 TEEDYKE-LLPALEELIA------------DHGKIRLLVDLRRDFE--GWS---PEARWEDAKFGLK-HLKHFRRIAVVG 72 (109)
T ss_dssp -HHHHHH-HHHHHHHHHT------------TSSSEEEEEEEC-CEE--EEH---HHHHHHHHHHHCC-CCGGEEEEEEE-
T ss_pred CHHHHHH-HHHHHHHHHh------------cCCceEEEEEecCccC--CCC---HHHHHHHHHhchh-hhcccCEEEEEE
Confidence 4555555 4445555442 235688889987 652 222 3444444444444 778889999999
Q ss_pred cChHHHHHHHHHHhc
Q 011588 271 AGPGFRLLWNTVKSF 285 (482)
Q Consensus 271 aP~~f~~lw~lvkpF 285 (482)
.+.+.+.+-+++.+|
T Consensus 73 ~~~~~~~~~~~~~~~ 87 (109)
T PF11964_consen 73 DSEWIRMIANFFAAF 87 (109)
T ss_dssp SSCCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhc
Confidence 999999998988886
No 23
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=21.37 E-value=1.4e+02 Score=19.97 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 011588 109 HMMLRFLKARKFDIDKAKHMW 129 (482)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l 129 (482)
...++-|+++++|+++|...|
T Consensus 16 ~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 16 EEARKALRATNNNVERAVEWL 36 (38)
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 478999999999999998765
No 24
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=20.03 E-value=72 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=18.9
Q ss_pred cccEEEEEecChHHHHHHHHHHhcCChh
Q 011588 262 TLHQMFIINAGPGFRLLWNTVKSFLDPK 289 (482)
Q Consensus 262 rL~~i~IVNaP~~f~~lw~lvkpFLd~k 289 (482)
.=..|+|||+||.+.-..+-+-++|.+.
T Consensus 204 ~GSGm~iiNPPw~l~~~l~~~l~~L~~~ 231 (245)
T PF04378_consen 204 NGSGMLIINPPWTLDEELEEILPWLAET 231 (245)
T ss_dssp -EEEEEEES--TTHHHHHHHHHHHHHHH
T ss_pred ecceEEEEcCCccHHHHHHHHHHHHHHH
Confidence 3456999999999988777776665543
Done!