Query 011588
Match_columns 482
No_of_seqs 319 out of 1562
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.1E-56 3.6E-61 456.5 21.1 271 71-345 27-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 7.3E-56 2.5E-60 444.4 22.1 263 80-345 26-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 4E-48 1.4E-52 404.4 22.4 246 73-325 2-248 (403)
4 1r5l_A Alpha-TTP, protein (alp 100.0 5.9E-46 2E-50 365.0 16.7 229 80-324 4-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 1.1E-45 3.9E-50 374.7 19.0 226 84-325 58-295 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.2 2E-11 6.7E-16 119.9 5.6 132 161-314 12-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 1.2E-09 4E-14 109.0 5.2 130 163-314 33-163 (290)
8 2dam_A ETEA protein; KIAA0887, 73.8 10 0.00034 28.9 6.7 44 79-130 13-56 (67)
9 2dhy_A CUE domain-containing p 67.8 7.5 0.00026 29.7 4.7 44 81-132 15-58 (67)
10 2dal_A Protein KIAA0794; FAS a 65.8 14 0.00047 27.6 5.8 40 81-129 12-51 (62)
11 1v92_A NSFL1 cofactor P47; 3-h 62.9 13 0.00044 25.5 4.9 37 84-129 5-41 (46)
12 1wgl_A TOLL-interacting protei 62.5 8.7 0.0003 28.6 4.1 39 85-131 10-48 (59)
13 2dah_A Ubiquilin-3; UBA domain 52.8 33 0.0011 24.8 5.8 38 86-132 11-48 (54)
14 1z96_A DNA-damage, UBA-domain 48.6 28 0.00096 22.9 4.6 21 109-129 19-39 (40)
15 1wr1_B Ubiquitin-like protein 48.3 39 0.0013 24.9 5.6 38 85-131 18-55 (58)
16 3e21_A HFAF1, FAS-associated f 46.6 48 0.0017 23.1 5.6 37 84-128 5-41 (45)
17 1vej_A Riken cDNA 4931431F19; 46.5 36 0.0012 26.4 5.4 37 85-130 30-66 (74)
18 2dna_A Unnamed protein product 45.5 46 0.0016 25.3 5.7 38 85-131 20-57 (67)
19 2bwb_A Ubiquitin-like protein 43.1 40 0.0014 23.4 4.8 25 106-130 20-44 (46)
20 2di0_A Activating signal coint 41.9 58 0.002 25.1 5.8 44 80-131 9-52 (71)
21 1otr_A Protein CUE2; protein-p 37.5 47 0.0016 23.6 4.4 39 86-132 6-44 (49)
22 2dzl_A Protein FAM100B; UBA-li 36.2 68 0.0023 24.1 5.4 35 86-129 19-53 (66)
23 1ufz_A Hypothetical protein BA 34.9 62 0.0021 25.7 5.1 40 85-131 35-74 (83)
24 1oai_A Nuclear RNA export fact 31.8 1.5E+02 0.0052 21.7 7.4 45 80-133 3-47 (59)
25 2cwb_A Chimera of immunoglobul 29.7 62 0.0021 26.9 4.6 26 106-131 79-104 (108)
26 2jy5_A Ubiquilin-1; UBA, alter 28.8 89 0.003 22.2 4.8 24 107-130 26-49 (52)
27 3e3v_A Regulatory protein RECX 25.9 32 0.0011 30.8 2.4 23 109-131 140-162 (177)
28 2jp7_A MRNA export factor MEX6 25.8 1.9E+02 0.0063 21.1 6.1 42 81-131 3-44 (57)
29 2cp8_A NEXT to BRCA1 gene 1 pr 24.2 1.1E+02 0.0039 22.2 4.5 36 87-131 12-47 (54)
30 1q02_A Sequestosome 1; helical 23.4 92 0.0031 22.5 3.8 22 109-130 27-48 (52)
31 2knz_A Ubiquilin-4; cytoplasm, 22.8 92 0.0031 22.1 3.9 25 107-131 25-49 (53)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.1e-56 Score=456.52 Aligned_cols=271 Identities=36% Similarity=0.641 Sum_probs=247.0
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhh
Q 011588 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (482)
Q Consensus 71 ~~s~~ied~~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~ 150 (482)
.+++-..++ +++|+++|++||+||.++++ +...|| .+|||||||||||+++|.+||+++++||+++++|.+..++.+
T Consensus 27 ~~~g~~~~l-t~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGNL-TKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTCC-CHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 344444444 89999999999999999884 566777 599999999999999999999999999999999999877655
Q ss_pred H------HHHHHHhccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCC
Q 011588 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (482)
Q Consensus 151 ~------el~ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~ 224 (482)
+ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.+.++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4456778999999999999999999999999999988888999999999999999998888888877777899
Q ss_pred CEEEEEeCCCCCCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHH
Q 011588 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (482)
Q Consensus 225 g~tiIiD~~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~ 304 (482)
++++|+|++|+++++++. .+.+++.+++++|++||+||+++||||+|++|+++|++++|||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999999875 3788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHhccCCCCCccccCCCcCCCC-CCCCccCCCCCCCCHHHHH
Q 011588 305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (482)
Q Consensus 305 L~e~Id~~~LP~~yGG~~~~~~-~ggc~~~~~~~W~dp~~~k 345 (482)
|.++||+++||++|||+++|.+ +|||+.++.|||+||++++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999999999999976 6999999999999998875
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=7.3e-56 Score=444.45 Aligned_cols=263 Identities=37% Similarity=0.690 Sum_probs=242.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHHHhc
Q 011588 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSY 159 (482)
Q Consensus 80 ~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~ev~k~ 159 (482)
.+++|+++|++||++|.++++ +...|| .+|||||||++||+++|.+||+++++||++++++.+..++.+.+...+.++
T Consensus 26 l~~~q~~~l~~lr~~l~~~~~-~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAGF-IERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhcCC-CCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 378889999999999998874 666777 599999999999999999999999999999999888776554444556788
Q ss_pred cccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCC
Q 011588 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 239 (482)
Q Consensus 160 ~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~ 239 (482)
++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++.+.++|+...+.+++++++|+|++|+++++
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~ 183 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHH
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHH
Confidence 89999999999999999999999999988888999999999999999999888888877778899999999999999999
Q ss_pred cchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCccccC
Q 011588 240 FSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLG 319 (482)
Q Consensus 240 ~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP~~yG 319 (482)
++.. +++++.+++++|+||||||+++||||+|++|+++|++++|||+++|++||+|+++++.+.|.++||+++||++||
T Consensus 184 ~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yG 262 (296)
T 1aua_A 184 AYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262 (296)
T ss_dssp HHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGT
T ss_pred HHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhC
Confidence 8753 789999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCcCCCC-CCCCccCCCCCCCCHHHHH
Q 011588 320 GTCNCAD-QGGCLRSDKGPWQNPEILK 345 (482)
Q Consensus 320 G~~~~~~-~ggc~~~~~~~W~dp~~~k 345 (482)
|+++|.. +|||+.++.|||++|++++
T Consensus 263 G~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 263 GKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred CCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 9999976 5899999999999998875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=4e-48 Score=404.38 Aligned_cols=246 Identities=30% Similarity=0.470 Sum_probs=217.8
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhH
Q 011588 73 SVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (482)
Q Consensus 73 s~~ied~~d~~E~~~l~~fR~~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~ 151 (482)
++-..++ +++|+++|++||++|.+.. ++| ..|| .+|||||||++||+++|.+||+++++||++++++.+... ..+
T Consensus 2 ~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~ 77 (403)
T 1olm_A 2 SGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPP 77 (403)
T ss_dssp CSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCC
T ss_pred CCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCH
Confidence 3333444 8999999999999998874 455 4666 599999999999999999999999999999999888653 223
Q ss_pred HHHHHHhccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEe
Q 011588 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (482)
Q Consensus 152 el~ev~k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD 231 (482)
+ .+.++++++++|+|++||||+|+++|.+|++++++..+.+++++++++.+|.++..+. .++...+.+++|+++|+|
T Consensus 78 ~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~D 154 (403)
T 1olm_A 78 E--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIYD 154 (403)
T ss_dssp H--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEEE
T ss_pred H--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEEE
Confidence 2 2456778889999999999999999999999988888999999999999999998643 333444567999999999
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCC
Q 011588 232 VQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311 (482)
Q Consensus 232 ~~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~ 311 (482)
++|+++++++++.+++++.+++++|+||||||+++||||+|++|.++|++++|||+++|++||+|+++++.+.|.++||+
T Consensus 155 ~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~ 234 (403)
T 1olm_A 155 CEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISP 234 (403)
T ss_dssp CTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCG
T ss_pred CCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcCh
Confidence 99999999988888999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCccccCCCcCCC
Q 011588 312 RELPEFLGGTCNCA 325 (482)
Q Consensus 312 ~~LP~~yGG~~~~~ 325 (482)
++||++|||+++++
T Consensus 235 ~~LP~~yGG~~~~~ 248 (403)
T 1olm_A 235 DQVPVEYGGTMTDP 248 (403)
T ss_dssp GGSBGGGTSSBCCT
T ss_pred hhCchhhCCCcCCC
Confidence 99999999999885
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.9e-46 Score=364.98 Aligned_cols=229 Identities=24% Similarity=0.343 Sum_probs=194.1
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHHH
Q 011588 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (482)
Q Consensus 80 ~d~~E~~~l~~fR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~ev~ 157 (482)
.++.|+++|++||+++.+++ ++|...|| .+|+|||||++||+++|.+||+++++||++++. +..++.++++.+..
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 36788899999999999875 55777777 599999999999999999999999999999862 22233334444444
Q ss_pred h-ccccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCC
Q 011588 158 S-YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (482)
Q Consensus 158 k-~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~s 236 (482)
+ .+..+++|+|++||||+|+++|.+|++++ +..++++++++.+|.++.. ...++.|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCC
Confidence 3 34556789999999999999999999874 7889999999999987653 123468999999999999
Q ss_pred CCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCCCCCcc
Q 011588 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (482)
Q Consensus 237 l~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~LP~ 316 (482)
++|+++...++++.+++++|+||||||+++||||+|++|+++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99987666789999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred ccCCCcCC
Q 011588 317 FLGGTCNC 324 (482)
Q Consensus 317 ~yGG~~~~ 324 (482)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999754
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.1e-45 Score=374.70 Aligned_cols=226 Identities=21% Similarity=0.336 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHH
Q 011588 84 ELQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKE 152 (482)
Q Consensus 84 E~~~l~~fR~~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRk~~~~d~i~~d~~~~e 152 (482)
..++|++||+||.++++++ .+.|| .+|||||||+|||+++|.+||+++++||++++. +..+..+++
T Consensus 58 ~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~--~~~~~~~~~ 134 (316)
T 3hx3_A 58 REEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE--LFDSLSPEA 134 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG--GTTTCCHHH
T ss_pred HHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch--hhcCCCHHH
Confidence 4689999999999999874 45666 599999999999999999999999999999973 334445556
Q ss_pred HHHHHhc-cccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEe
Q 011588 153 INEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (482)
Q Consensus 153 l~ev~k~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD 231 (482)
+..+++. ++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++.. ...++.|+++|+|
T Consensus 135 i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~--------~~~~v~g~v~IiD 202 (316)
T 3hx3_A 135 VRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN--------EETQINGFCIIEN 202 (316)
T ss_dssp HHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEE
T ss_pred HHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc--------ccCCcceEEEEEE
Confidence 6555544 4567889999999999999999999874 8899999999999998753 2446889999999
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHhccCC
Q 011588 232 VQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311 (482)
Q Consensus 232 ~~G~sl~~~~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~ 311 (482)
++|++++|+.......++.+++++|++||+||+++||||+|++|.++|++++|||+++|++||+|+++++ +.|.++||+
T Consensus 203 ~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~-~~L~~~I~~ 281 (316)
T 3hx3_A 203 FKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQEIDE 281 (316)
T ss_dssp CTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCC-HHHHHHSCG
T ss_pred CCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCH-HHHHhhCCH
Confidence 9999999986655788999999999999999999999999999999999999999999999999998765 689999999
Q ss_pred CCCccccCCCcCCC
Q 011588 312 RELPEFLGGTCNCA 325 (482)
Q Consensus 312 ~~LP~~yGG~~~~~ 325 (482)
++||++|||++++.
T Consensus 282 ~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 282 NILPSDFGGTLPKY 295 (316)
T ss_dssp GGSBGGGTSSBCCC
T ss_pred hhCcHhhCCCCCCc
Confidence 99999999999863
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.15 E-value=2e-11 Score=119.92 Aligned_cols=132 Identities=13% Similarity=0.145 Sum_probs=107.8
Q ss_pred ccccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCc
Q 011588 161 PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNF 240 (482)
Q Consensus 161 p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~ 240 (482)
..+..|.|++||||+++.+.+++... .+.+.++.|++..++... -....+|+|+.|.+..+.
T Consensus 12 ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~~n~ 73 (256)
T 3pg7_A 12 IFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNR 73 (256)
T ss_dssp SEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGC
T ss_pred CEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCcccC
Confidence 33445899999999999999998765 378888877777666543 256899999999998765
Q ss_pred chhHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHH-HHhcCChhhhcceEEcCccchHHHHhccCCCCC
Q 011588 241 SKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (482)
Q Consensus 241 ~~~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw~l-vkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~L 314 (482)
+ ..+.++.+.+++...|...|+++||+|++++|+.+|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 74 p--~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 74 F--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp C--CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred C--cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 4 37899999999999999999999999999999977665 456666688899999976 5788888876655
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=109.01 Aligned_cols=130 Identities=13% Similarity=0.152 Sum_probs=97.7
Q ss_pred ccccCCCCCCcEEEEeccccCcchhhhccCHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCEEEEEeCCCCCCCCcch
Q 011588 163 GYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 242 (482)
Q Consensus 163 ~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pa~s~~~~~~v~g~tiIiD~~G~sl~~~~~ 242 (482)
+..|.|++||||+++.+++++... .+.+.++.+++..+++.. -...++|+|+.|++..+-+
T Consensus 33 ~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p- 93 (290)
T 3peg_A 33 YQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRF- 93 (290)
T ss_dssp EEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCC-
T ss_pred EEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCC-
Confidence 345889999999999999998765 377777777766665433 2578999999999987644
Q ss_pred hHHHHHHHHHHHhcccccccccEEEEEecChHHHHHH-HHHHhcCChhhhcceEEcCccchHHHHhccCCCCC
Q 011588 243 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (482)
Q Consensus 243 ~~~~lik~i~kilq~~YPerL~~i~IVNaP~~f~~lw-~lvkpFLd~kTr~KI~~lg~~~~~~L~e~Id~~~L 314 (482)
..++++.+.+++...|+..|+++||+|++.+|+..+ ...++|...+..+|+.++.+. ..|.++++.+++
T Consensus 94 -~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 94 -KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp -CHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred -hHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 378999999999999999999999999999998754 566788888889999988653 448888877654
No 8
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.80 E-value=10 Score=28.88 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011588 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 79 ~~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (482)
.++..+.+.|.+|....- ..|......||...+||++.|+..+-
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346778889999998772 12445789999999999999988764
No 9
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.76 E-value=7.5 Score=29.74 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011588 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (482)
Q Consensus 81 d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (482)
..+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|-++
T Consensus 15 ~~~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 344567888888876 2 2444 588999999999999999988654
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.82 E-value=14 Score=27.57 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011588 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (482)
Q Consensus 81 d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (482)
...+.+.|.+|..... .+ ......||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 5677788999997651 12 3578999999999999998776
No 11
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=62.86 E-value=13 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011588 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (482)
Q Consensus 84 E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (482)
+.+.|.+|..... . +......||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg--------~-~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG--------A-EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC--------C-CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC--------c-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888886541 1 23578999999999999998776
No 12
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=62.52 E-value=8.7 Score=28.56 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 85 ~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
++++++|++.. | ..|. ..+-.-|++++.|++.|+.+|-+
T Consensus 10 ee~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 36677777765 3 2455 48999999999999999999864
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.81 E-value=33 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011588 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (482)
Q Consensus 86 ~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (482)
++|++|++.= ..|.+.-++-|++.++|+++|++.|-..
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666543 3343456999999999999999888643
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=48.65 E-value=28 Score=22.86 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 011588 109 HMMLRFLKARKFDIDKAKHMW 129 (482)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l 129 (482)
....+-|+++++|++.|+..|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 357899999999999998764
No 15
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=48.30 E-value=39 Score=24.86 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 85 ~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
.++|++|++.= ..|.+..++=|++.++|+++|++.|-.
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34666666543 234346799999999999999988754
No 16
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=46.58 E-value=48 Score=23.14 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 011588 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (482)
Q Consensus 84 E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 128 (482)
..+.|.+|....- .+|...-..||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iTG--------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG--------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC--------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 4578889988552 244346899999999999999753
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.55 E-value=36 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 85 ~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (482)
.++|++|++.= ..|.+..++=|++.++|+++|++.|.
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35667777643 23334679999999999999998875
No 18
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.54 E-value=46 Score=25.31 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 85 ~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
..+|++|++.= ..|.+.-++=|++.+.|+++|++.|..
T Consensus 20 ~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45677776543 234446799999999999999888754
No 19
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=43.09 E-value=40 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 011588 106 DDYHMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~~~l~ 130 (482)
.|.+..++=|++.++|+++|++.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3434679999999999999998764
No 20
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.95 E-value=58 Score=25.09 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 80 ~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
..++-...|.++++.+ |. ..+ .++.+.|..++.|+|.++..|-+
T Consensus 9 ~~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 3566677888888776 43 344 48999999999999999988753
No 21
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=37.51 E-value=47 Score=23.65 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011588 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (482)
Q Consensus 86 ~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (482)
..++.|.+.. |. .+- ..+-+-|+++++|+++|+++|-+.
T Consensus 6 ~~v~~L~EMF------P~-~~~-~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMF------PA-ISK-SKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHC------SS-SCH-HHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5555665554 33 233 478999999999999999998764
No 22
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.21 E-value=68 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011588 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (482)
Q Consensus 86 ~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (482)
+.|.+|..... .++ .....||.+.+||++.|+..+
T Consensus 19 ~~i~qF~~iTg--------~~~-~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG--------CAA-DQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC--------CCH-HHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC--------CCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 67889987651 133 578999999999999998776
No 23
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=34.94 E-value=62 Score=25.67 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 85 ~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
...++++|..|-. ...| ..|.+-....+||+++|...+-+
T Consensus 35 ~SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHh
Confidence 3568889988832 2345 47888889999999999988754
No 24
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.76 E-value=1.5e+02 Score=21.66 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011588 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133 (482)
Q Consensus 80 ~d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l 133 (482)
.++++.+-|.+|.+.-. .+- .+-.++|...+||.++|.+.+.+..
T Consensus 3 ls~~q~~mv~~~s~~Tg--------mn~-~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 3 LSPEQQEMLQAFSTQSG--------MNL-EWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777788888887552 222 5899999999999999999887644
No 25
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=29.67 E-value=62 Score=26.94 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 106 DDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
.|....++=|++.++|+++|++.|..
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34347899999999999999998853
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=28.82 E-value=89 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.092 Sum_probs=19.7
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHH
Q 011588 107 DYHMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 107 D~~~LLRFLrArkfDvekA~~~l~ 130 (482)
|.+..++=|++.++|+++|++.|.
T Consensus 26 ~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 26 NREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 335679999999999999988764
No 27
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.90 E-value=32 Score=30.84 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 011588 109 HMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l~~ 131 (482)
.-+.+||..++|+.+.+...+.+
T Consensus 140 ~K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 140 NKIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 46889999999999988877764
No 28
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=25.78 E-value=1.9e+02 Score=21.10 Aligned_cols=42 Identities=5% Similarity=0.125 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 81 d~~E~~~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
++.+.+-|.+|.+.-. .+- ++-..+|...+||.++|.+.+.+
T Consensus 3 ~~~q~~mv~~~s~~T~--------Mn~-e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 3 NPVQLELLNKLHLETK--------LNA-EYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CHHHHHHHHHHHHHHC--------SCH-HHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 5667777888876552 222 58899999999999999999876
No 29
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.25 E-value=1.1e+02 Score=22.16 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 87 AVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 87 ~l~~fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
.+++|++.= ..|...=.+-|+..++|+++|+..|..
T Consensus 12 ~L~~L~eMG---------F~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 12 LMAHLFEMG---------FCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHHHHT---------CCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 455666543 334457899999999999999888754
No 30
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=23.43 E-value=92 Score=22.47 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 011588 109 HMMLRFLKARKFDIDKAKHMWA 130 (482)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l~ 130 (482)
.+|-|.|.+.++|+.+|.+.+.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 5899999999999999998764
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=22.83 E-value=92 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHH
Q 011588 107 DYHMMLRFLKARKFDIDKAKHMWAE 131 (482)
Q Consensus 107 D~~~LLRFLrArkfDvekA~~~l~~ 131 (482)
|.+..++-|+++++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3357899999999999999988754
Done!