Query 011590
Match_columns 482
No_of_seqs 118 out of 1270
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:03:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0028 IlvB Thiamine pyrophos 100.0 9.8E-98 2E-102 778.5 44.4 448 13-482 1-458 (550)
2 KOG1185 Thiamine pyrophosphate 100.0 5.5E-96 1E-100 709.7 40.8 470 4-482 4-480 (571)
3 TIGR01504 glyox_carbo_lig glyo 100.0 1.5E-90 3.2E-95 739.0 45.0 454 13-482 2-468 (588)
4 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.5E-90 3.3E-95 736.9 44.9 459 14-482 3-466 (554)
5 PRK09259 putative oxalyl-CoA d 100.0 8.9E-90 1.9E-94 732.7 46.3 464 11-482 7-473 (569)
6 PRK08979 acetolactate synthase 100.0 9.4E-90 2E-94 732.4 45.6 457 13-482 3-471 (572)
7 PRK05858 hypothetical protein; 100.0 1.8E-89 3.8E-94 726.4 46.5 452 13-482 4-457 (542)
8 PRK06965 acetolactate synthase 100.0 2E-89 4.4E-94 731.4 46.4 459 10-482 17-487 (587)
9 PRK07282 acetolactate synthase 100.0 2.6E-89 5.5E-94 727.6 44.5 451 12-482 8-468 (566)
10 PRK09107 acetolactate synthase 100.0 4.3E-89 9.3E-94 728.7 45.6 462 8-482 5-480 (595)
11 PRK07979 acetolactate synthase 100.0 5.1E-89 1.1E-93 727.6 45.2 457 13-482 3-471 (574)
12 TIGR03457 sulphoacet_xsc sulfo 100.0 1E-88 2.2E-93 726.0 46.8 454 13-482 1-480 (579)
13 PRK06725 acetolactate synthase 100.0 9E-89 2E-93 722.8 45.8 451 12-482 13-472 (570)
14 PRK11269 glyoxylate carboligas 100.0 1.4E-88 3E-93 726.1 45.8 453 13-482 3-469 (591)
15 PRK06048 acetolactate synthase 100.0 2E-88 4.4E-93 721.2 46.2 450 12-482 6-464 (561)
16 PRK08155 acetolactate synthase 100.0 1.8E-88 3.9E-93 722.5 45.4 459 1-482 1-469 (564)
17 PRK06466 acetolactate synthase 100.0 2.9E-88 6.3E-93 721.8 44.4 460 13-482 3-473 (574)
18 PRK07418 acetolactate synthase 100.0 4.4E-88 9.5E-93 724.9 45.8 457 10-482 15-484 (616)
19 PRK08978 acetolactate synthase 100.0 7.7E-88 1.7E-92 715.7 45.5 442 14-482 1-451 (548)
20 PRK07525 sulfoacetaldehyde ace 100.0 1.5E-87 3.2E-92 717.8 46.3 455 13-482 5-485 (588)
21 PRK06154 hypothetical protein; 100.0 2.3E-87 5E-92 711.3 46.6 452 11-482 17-481 (565)
22 PLN02470 acetolactate synthase 100.0 1.2E-87 2.6E-92 718.1 44.5 460 8-482 7-476 (585)
23 PRK08527 acetolactate synthase 100.0 1.4E-87 3.1E-92 714.9 44.7 453 13-482 2-464 (563)
24 PRK07710 acetolactate synthase 100.0 2.1E-87 4.5E-92 714.8 46.0 453 11-482 13-474 (571)
25 PRK08322 acetolactate synthase 100.0 1.5E-87 3.3E-92 714.2 44.6 447 14-482 1-456 (547)
26 PRK07789 acetolactate synthase 100.0 1.5E-87 3.2E-92 720.3 44.1 457 12-482 29-497 (612)
27 PRK08617 acetolactate synthase 100.0 2.6E-87 5.6E-92 712.3 44.2 452 12-482 3-464 (552)
28 TIGR02418 acolac_catab acetola 100.0 3.9E-87 8.4E-92 709.0 45.2 448 16-482 1-458 (539)
29 PRK06456 acetolactate synthase 100.0 8.7E-87 1.9E-91 711.2 45.6 456 14-482 2-471 (572)
30 CHL00099 ilvB acetohydroxyacid 100.0 9.5E-87 2.1E-91 710.5 45.7 457 13-482 9-480 (585)
31 PRK08273 thiamine pyrophosphat 100.0 7.1E-87 1.5E-91 713.1 43.8 451 13-482 2-471 (597)
32 TIGR02720 pyruv_oxi_spxB pyruv 100.0 1.5E-86 3.3E-91 707.6 44.7 447 16-482 1-458 (575)
33 PRK08611 pyruvate oxidase; Pro 100.0 2.6E-86 5.6E-91 706.0 46.0 446 12-482 2-458 (576)
34 PRK08199 thiamine pyrophosphat 100.0 3.1E-86 6.8E-91 704.3 45.6 451 9-482 3-465 (557)
35 PRK06882 acetolactate synthase 100.0 3.9E-86 8.5E-91 706.4 45.3 458 12-482 2-471 (574)
36 PRK07524 hypothetical protein; 100.0 4E-86 8.7E-91 700.7 44.5 443 15-482 3-457 (535)
37 TIGR00118 acolac_lg acetolacta 100.0 8.1E-86 1.8E-90 701.7 45.6 452 14-482 1-462 (558)
38 PRK06276 acetolactate synthase 100.0 1.1E-85 2.3E-90 703.2 44.9 455 14-482 1-469 (586)
39 PRK06546 pyruvate dehydrogenas 100.0 1.2E-85 2.5E-90 700.6 44.9 443 14-482 3-458 (578)
40 PRK09124 pyruvate dehydrogenas 100.0 3.3E-85 7.3E-90 698.7 45.5 445 13-482 2-458 (574)
41 PRK06457 pyruvate dehydrogenas 100.0 7.4E-85 1.6E-89 692.1 44.3 435 14-482 2-447 (549)
42 PRK06112 acetolactate synthase 100.0 2.4E-84 5.2E-89 692.7 46.4 461 11-482 11-487 (578)
43 PRK08327 acetolactate synthase 100.0 1E-84 2.2E-89 692.8 41.1 451 13-482 6-482 (569)
44 PRK08266 hypothetical protein; 100.0 4.7E-84 1E-88 686.3 44.9 443 13-482 3-452 (542)
45 PRK07064 hypothetical protein; 100.0 2.7E-83 5.8E-88 681.2 43.6 441 13-482 2-455 (544)
46 PLN02573 pyruvate decarboxylas 100.0 9.6E-84 2.1E-88 684.7 34.3 450 10-482 12-478 (578)
47 PRK07092 benzoylformate decarb 100.0 9.9E-83 2.1E-87 673.6 41.5 442 9-482 7-457 (530)
48 PRK07586 hypothetical protein; 100.0 2.4E-82 5.3E-87 669.0 41.0 424 14-482 1-435 (514)
49 PRK12474 hypothetical protein; 100.0 4.4E-82 9.5E-87 666.4 41.6 425 12-482 3-439 (518)
50 TIGR03394 indol_phenyl_DC indo 100.0 6E-82 1.3E-86 665.8 34.3 434 15-482 1-452 (535)
51 TIGR03393 indolpyr_decarb indo 100.0 6.8E-82 1.5E-86 668.1 32.4 432 14-482 1-454 (539)
52 KOG4166 Thiamine pyrophosphate 100.0 4.8E-81 1E-85 594.9 27.1 459 13-481 90-573 (675)
53 PRK07449 2-succinyl-5-enolpyru 100.0 8.5E-79 1.8E-83 649.5 36.4 447 12-482 7-474 (568)
54 TIGR00173 menD 2-succinyl-5-en 100.0 4E-74 8.6E-79 592.5 36.7 412 16-446 2-431 (432)
55 COG3961 Pyruvate decarboxylase 100.0 1.4E-72 3.1E-77 554.1 23.5 440 12-481 2-460 (557)
56 PLN02980 2-oxoglutarate decarb 100.0 4.4E-71 9.6E-76 641.7 36.4 456 14-482 301-812 (1655)
57 COG3960 Glyoxylate carboligase 100.0 1.3E-66 2.9E-71 483.6 22.5 452 12-480 2-467 (592)
58 COG3962 Acetolactate synthase 100.0 4.3E-65 9.3E-70 491.1 31.8 457 10-482 3-494 (617)
59 KOG1184 Thiamine pyrophosphate 100.0 7.4E-66 1.6E-70 504.4 21.6 444 12-481 2-464 (561)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 1.7E-43 3.6E-48 352.8 29.8 453 9-482 3-471 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 2.3E-44 5E-49 321.0 17.9 162 15-177 1-163 (164)
62 cd07037 TPP_PYR_MenD Pyrimidin 100.0 8.6E-43 1.9E-47 308.3 17.6 154 19-172 2-162 (162)
63 PF02776 TPP_enzyme_N: Thiamin 100.0 4.7E-42 1E-46 310.1 17.2 169 14-182 1-171 (172)
64 cd07038 TPP_PYR_PDC_IPDC_like 100.0 3.4E-39 7.4E-44 287.3 15.8 153 18-172 1-162 (162)
65 cd07035 TPP_PYR_POX_like Pyrim 100.0 3.3E-36 7.2E-41 267.6 16.4 155 18-172 1-155 (155)
66 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 6.8E-32 1.5E-36 241.2 14.9 152 16-171 1-159 (160)
67 cd06586 TPP_enzyme_PYR Pyrimid 100.0 8.7E-30 1.9E-34 226.1 16.0 153 18-172 1-154 (154)
68 TIGR03845 sulfopyru_alph sulfo 100.0 3.7E-28 8.1E-33 214.0 13.8 146 18-175 2-157 (157)
69 PF00205 TPP_enzyme_M: Thiamin 99.9 8.5E-26 1.8E-30 196.3 11.9 129 208-336 1-137 (137)
70 TIGR03297 Ppyr-DeCO2ase phosph 99.9 1.2E-24 2.6E-29 216.4 18.0 146 28-175 1-155 (361)
71 TIGR03336 IOR_alpha indolepyru 99.9 1.2E-21 2.6E-26 209.4 24.8 414 13-482 4-454 (595)
72 cd02006 TPP_Gcl Thiamine pyrop 99.9 3.6E-23 7.9E-28 191.6 9.5 101 377-482 6-107 (202)
73 cd02013 TPP_Xsc_like Thiamine 99.9 1.2E-22 2.7E-27 187.0 9.7 101 377-482 2-103 (196)
74 cd02015 TPP_AHAS Thiamine pyro 99.8 2.4E-21 5.2E-26 177.2 9.1 98 380-482 2-100 (186)
75 cd02010 TPP_ALS Thiamine pyrop 99.8 2.4E-21 5.2E-26 175.3 8.8 96 382-482 2-98 (177)
76 cd02003 TPP_IolD Thiamine pyro 99.8 7.6E-21 1.7E-25 176.3 9.1 95 383-482 3-98 (205)
77 cd02005 TPP_PDC_IPDC Thiamine 99.8 1E-20 2.2E-25 172.1 9.0 100 378-482 1-100 (183)
78 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 2.2E-20 4.8E-25 168.7 9.8 96 382-482 2-98 (172)
79 cd02009 TPP_SHCHC_synthase Thi 99.8 1.1E-20 2.4E-25 170.9 7.1 96 382-482 4-100 (175)
80 cd02014 TPP_POX Thiamine pyrop 99.8 5.9E-20 1.3E-24 166.7 8.8 99 379-482 2-101 (178)
81 cd02002 TPP_BFDC Thiamine pyro 99.8 2.3E-19 4.9E-24 163.1 8.2 97 380-482 2-99 (178)
82 PRK06163 hypothetical protein; 99.7 3.8E-18 8.2E-23 156.7 8.3 94 377-482 11-108 (202)
83 PF02775 TPP_enzyme_C: Thiamin 99.7 1.1E-17 2.3E-22 148.2 5.6 76 406-482 3-78 (153)
84 cd02001 TPP_ComE_PpyrDC Thiami 99.7 4.8E-17 1E-21 144.0 7.7 87 384-482 4-92 (157)
85 cd03371 TPP_PpyrDC Thiamine py 99.7 5.5E-17 1.2E-21 148.0 7.2 89 384-482 4-99 (188)
86 cd00568 TPP_enzymes Thiamine p 99.7 1.2E-16 2.6E-21 143.7 9.2 94 384-482 2-96 (168)
87 TIGR03846 sulfopy_beta sulfopy 99.7 1E-16 2.3E-21 145.2 7.8 88 383-482 3-92 (181)
88 cd02008 TPP_IOR_alpha Thiamine 99.6 1.5E-16 3.2E-21 144.4 6.0 88 382-482 13-102 (178)
89 cd03375 TPP_OGFOR Thiamine pyr 99.6 5.4E-16 1.2E-20 142.3 7.2 89 385-482 11-102 (193)
90 cd03376 TPP_PFOR_porB_like Thi 99.6 4.5E-16 9.8E-21 146.8 3.7 96 381-482 13-113 (235)
91 cd03372 TPP_ComE Thiamine pyro 99.6 2E-15 4.4E-20 136.7 7.8 87 383-481 3-91 (179)
92 cd02018 TPP_PFOR Thiamine pyro 99.6 1.2E-15 2.6E-20 144.2 5.3 96 382-482 14-120 (237)
93 PRK11867 2-oxoglutarate ferred 99.5 1.6E-14 3.5E-19 139.5 6.9 93 380-482 24-120 (286)
94 PRK05778 2-oxoglutarate ferred 99.5 7.2E-14 1.6E-18 135.5 8.4 77 397-482 44-121 (301)
95 TIGR02177 PorB_KorB 2-oxoacid: 99.5 8.9E-14 1.9E-18 133.7 8.6 76 397-482 27-104 (287)
96 PRK09628 oorB 2-oxoglutarate-a 99.5 7.8E-14 1.7E-18 133.8 6.9 95 377-482 24-119 (277)
97 PRK11869 2-oxoacid ferredoxin 99.4 2.9E-13 6.3E-18 129.7 9.1 90 384-482 19-111 (280)
98 TIGR00315 cdhB CO dehydrogenas 99.4 7.6E-13 1.6E-17 115.9 9.9 98 209-310 18-133 (162)
99 PRK11866 2-oxoacid ferredoxin 99.4 5.3E-13 1.2E-17 127.9 8.5 92 382-482 16-110 (279)
100 PRK00945 acetyl-CoA decarbonyl 99.4 1.5E-12 3.3E-17 114.8 10.6 100 209-311 25-142 (171)
101 COG4032 Predicted thiamine-pyr 99.0 3.1E-09 6.7E-14 88.1 9.5 162 12-177 2-168 (172)
102 PRK08659 2-oxoglutarate ferred 98.9 2.6E-08 5.6E-13 100.6 16.4 159 12-173 5-172 (376)
103 PRK09627 oorA 2-oxoglutarate-a 98.9 3E-08 6.4E-13 99.8 16.0 159 13-174 5-172 (375)
104 PRK07119 2-ketoisovalerate fer 98.8 8.8E-08 1.9E-12 95.9 16.2 157 12-174 5-173 (352)
105 TIGR03710 OAFO_sf 2-oxoacid:ac 98.8 1.1E-07 2.3E-12 101.3 14.7 160 12-176 194-364 (562)
106 PRK08366 vorA 2-ketoisovalerat 98.7 2.3E-07 5E-12 93.8 15.7 158 12-175 4-169 (390)
107 PRK08367 porA pyruvate ferredo 98.7 6.1E-07 1.3E-11 91.0 16.0 160 12-176 5-173 (394)
108 PF01855 POR_N: Pyruvate flavo 98.6 1.7E-07 3.6E-12 88.1 10.2 150 23-175 2-157 (230)
109 cd02012 TPP_TK Thiamine pyroph 98.6 1.9E-08 4E-13 96.7 3.7 52 430-481 103-160 (255)
110 PRK09622 porA pyruvate flavodo 98.6 7.9E-07 1.7E-11 90.9 15.5 159 12-175 11-178 (407)
111 TIGR03181 PDH_E1_alph_x pyruva 98.6 3.2E-08 7E-13 98.7 3.6 53 430-482 120-178 (341)
112 cd02000 TPP_E1_PDC_ADC_BCADC T 98.5 5.8E-08 1.2E-12 95.2 4.2 53 430-482 102-160 (293)
113 CHL00149 odpA pyruvate dehydro 98.4 2.3E-07 5E-12 92.4 3.7 53 429-482 125-191 (341)
114 TIGR03182 PDH_E1_alph_y pyruva 98.3 3.2E-07 7E-12 90.6 3.5 53 430-482 108-166 (315)
115 COG4231 Indolepyruvate ferredo 98.2 5E-05 1.1E-09 78.9 17.3 161 12-178 14-181 (640)
116 COG0674 PorA Pyruvate:ferredox 98.2 4.5E-05 9.8E-10 76.7 16.2 162 12-178 4-171 (365)
117 PRK05899 transketolase; Review 98.2 8.8E-07 1.9E-11 95.9 3.9 52 430-481 116-183 (624)
118 cd02007 TPP_DXS Thiamine pyrop 98.2 8.7E-07 1.9E-11 81.4 3.0 53 430-482 73-131 (195)
119 PRK13030 2-oxoacid ferredoxin 98.0 0.00061 1.3E-08 77.3 22.3 162 12-178 18-208 (1159)
120 PLN02374 pyruvate dehydrogenas 97.9 1.1E-05 2.3E-10 82.6 5.0 54 429-482 191-257 (433)
121 PRK05444 1-deoxy-D-xylulose-5- 97.9 6.6E-06 1.4E-10 88.3 3.5 53 430-482 115-174 (580)
122 PRK09193 indolepyruvate ferred 97.9 0.0007 1.5E-08 76.7 18.9 162 12-178 26-216 (1165)
123 PRK13029 2-oxoacid ferredoxin 97.8 0.0031 6.7E-08 71.5 21.2 161 13-178 30-219 (1186)
124 PRK12571 1-deoxy-D-xylulose-5- 97.7 2.5E-05 5.4E-10 84.5 4.6 53 430-482 121-175 (641)
125 TIGR02176 pyruv_ox_red pyruvat 97.7 0.00076 1.7E-08 77.6 16.1 152 13-172 3-169 (1165)
126 COG1880 CdhB CO dehydrogenase/ 97.6 0.00019 4.2E-09 61.2 7.2 81 209-289 26-120 (170)
127 PF02552 CO_dh: CO dehydrogena 97.1 0.0008 1.7E-08 59.4 5.2 103 207-311 23-139 (167)
128 PRK03363 fixB putative electro 96.9 0.0019 4.2E-08 63.3 6.1 113 221-341 197-312 (313)
129 cd07033 TPP_PYR_DXS_TK_like Py 96.9 0.04 8.6E-07 48.6 14.0 149 16-172 3-156 (156)
130 PRK11916 electron transfer fla 96.8 0.0026 5.6E-08 62.3 6.5 112 222-341 196-311 (312)
131 PLN00022 electron transfer fla 96.8 0.0027 5.8E-08 63.3 6.5 113 222-342 239-354 (356)
132 COG2025 FixB Electron transfer 96.7 0.0044 9.5E-08 60.3 6.9 113 222-342 198-312 (313)
133 COG1029 FwdB Formylmethanofura 96.6 0.02 4.4E-07 55.8 10.7 127 205-343 66-219 (429)
134 PRK11864 2-ketoisovalerate fer 96.5 0.004 8.7E-08 60.5 5.3 90 384-482 29-125 (300)
135 PRK11865 pyruvate ferredoxin o 96.4 0.0062 1.4E-07 59.3 6.0 94 380-482 25-124 (299)
136 cd02013 TPP_Xsc_like Thiamine 96.3 0.015 3.3E-07 53.4 7.6 109 63-174 58-180 (196)
137 smart00861 Transket_pyr Transk 96.1 0.074 1.6E-06 47.5 11.3 112 54-172 51-166 (168)
138 KOG3954 Electron transfer flav 96.1 0.011 2.5E-07 54.9 5.5 122 213-342 205-335 (336)
139 cd01408 SIRT1 SIRT1: Eukaryoti 96.1 0.0053 1.1E-07 58.1 3.5 78 259-336 157-235 (235)
140 PF02779 Transket_pyr: Transke 95.9 0.084 1.8E-06 47.7 10.4 120 52-175 48-175 (178)
141 cd02009 TPP_SHCHC_synthase Thi 95.7 0.042 9.1E-07 49.5 7.8 105 63-173 56-175 (175)
142 PF13292 DXP_synthase_N: 1-deo 95.7 0.036 7.8E-07 52.4 7.5 100 379-482 44-167 (270)
143 cd02011 TPP_PK Thiamine pyroph 95.7 0.01 2.2E-07 55.3 3.8 33 430-462 60-92 (227)
144 PF02775 TPP_enzyme_C: Thiamin 95.7 0.044 9.5E-07 48.1 7.8 103 62-170 32-153 (153)
145 cd02004 TPP_BZL_OCoD_HPCL Thia 95.7 0.051 1.1E-06 48.7 8.2 105 63-173 53-172 (172)
146 cd02006 TPP_Gcl Thiamine pyrop 95.7 0.11 2.4E-06 47.9 10.5 110 63-174 62-195 (202)
147 cd02001 TPP_ComE_PpyrDC Thiami 95.6 0.45 9.8E-06 42.0 13.8 136 31-173 16-155 (157)
148 cd07036 TPP_PYR_E1-PDHc-beta_l 95.5 0.66 1.4E-05 41.4 14.6 148 16-172 3-167 (167)
149 PRK09212 pyruvate dehydrogenas 95.3 1.4 3E-05 43.9 17.6 154 13-175 3-177 (327)
150 cd02015 TPP_AHAS Thiamine pyro 95.3 0.12 2.5E-06 47.0 9.2 106 63-174 55-175 (186)
151 CHL00144 odpB pyruvate dehydro 95.2 2.7 5.9E-05 41.8 19.3 227 13-250 3-258 (327)
152 PRK14138 NAD-dependent deacety 95.2 0.022 4.8E-07 54.2 4.3 68 271-340 172-241 (244)
153 cd02010 TPP_ALS Thiamine pyrop 95.1 0.15 3.2E-06 46.0 9.3 103 66-174 56-171 (177)
154 TIGR00232 tktlase_bact transke 95.1 0.15 3.3E-06 55.6 11.0 117 53-174 397-516 (653)
155 cd02003 TPP_IolD Thiamine pyro 95.0 0.14 2.9E-06 47.5 8.9 138 31-174 17-185 (205)
156 cd02014 TPP_POX Thiamine pyrop 95.0 0.9 2E-05 40.9 14.0 105 63-173 56-173 (178)
157 TIGR00204 dxs 1-deoxy-D-xylulo 95.0 0.89 1.9E-05 49.4 16.2 152 14-174 310-471 (617)
158 PLN02790 transketolase 94.8 0.23 4.9E-06 54.3 11.1 117 53-174 393-513 (654)
159 cd02761 MopB_FmdB-FwdB The Mop 94.8 0.088 1.9E-06 54.3 7.7 111 204-316 56-181 (415)
160 PRK09444 pntB pyridine nucleot 94.7 0.12 2.6E-06 52.5 8.1 41 206-246 294-334 (462)
161 PF00456 Transketolase_N: Tran 94.6 0.021 4.5E-07 56.8 2.5 49 430-478 109-173 (332)
162 cd02008 TPP_IOR_alpha Thiamine 94.6 0.44 9.6E-06 42.9 10.8 104 65-170 58-174 (178)
163 PRK00481 NAD-dependent deacety 94.4 0.057 1.2E-06 51.4 4.9 67 272-340 172-240 (242)
164 PRK12753 transketolase; Review 94.3 0.36 7.9E-06 52.8 11.4 117 53-174 403-522 (663)
165 PRK05333 NAD-dependent deacety 94.3 0.05 1.1E-06 53.1 4.4 70 271-341 208-278 (285)
166 cd02017 TPP_E1_EcPDC_like Thia 94.3 0.032 7E-07 56.0 3.0 47 431-477 117-176 (386)
167 cd02002 TPP_BFDC Thiamine pyro 94.3 1.3 2.9E-05 39.6 13.4 114 51-171 40-177 (178)
168 PTZ00089 transketolase; Provis 94.2 0.36 7.9E-06 52.8 11.2 117 53-174 404-523 (661)
169 PF02233 PNTB: NAD(P) transhyd 94.2 0.12 2.6E-06 53.0 6.9 129 207-340 296-463 (463)
170 PLN02225 1-deoxy-D-xylulose-5- 94.1 8 0.00017 42.4 20.8 154 13-174 380-542 (701)
171 PTZ00182 3-methyl-2-oxobutanat 94.1 2 4.4E-05 43.2 15.5 157 11-176 32-209 (355)
172 PLN02790 transketolase 94.1 0.046 1E-06 59.6 4.0 49 430-478 103-167 (654)
173 PRK05444 1-deoxy-D-xylulose-5- 94.1 0.44 9.4E-06 51.5 11.3 153 14-175 279-441 (580)
174 cd03375 TPP_OGFOR Thiamine pyr 94.0 0.44 9.6E-06 43.6 9.8 149 15-173 9-184 (193)
175 cd00568 TPP_enzymes Thiamine p 94.0 0.4 8.6E-06 42.4 9.3 102 64-171 52-167 (168)
176 PRK11892 pyruvate dehydrogenas 94.0 0.64 1.4E-05 48.5 11.9 150 12-169 140-309 (464)
177 PRK12754 transketolase; Review 93.9 0.45 9.8E-06 51.9 11.1 116 53-173 403-521 (663)
178 PRK12571 1-deoxy-D-xylulose-5- 93.9 0.49 1.1E-05 51.6 11.3 151 15-174 320-480 (641)
179 TIGR03846 sulfopy_beta sulfopy 93.8 1.6 3.5E-05 39.4 13.0 104 64-174 48-157 (181)
180 PLN02234 1-deoxy-D-xylulose-5- 93.8 0.42 9.2E-06 51.7 10.5 103 377-481 108-232 (641)
181 cd02005 TPP_PDC_IPDC Thiamine 93.8 0.44 9.4E-06 43.2 9.2 104 65-173 57-174 (183)
182 PRK08611 pyruvate oxidase; Pro 93.7 0.7 1.5E-05 50.0 12.2 106 63-174 413-531 (576)
183 PLN02582 1-deoxy-D-xylulose-5- 93.7 0.48 1E-05 51.7 10.8 152 14-174 356-517 (677)
184 COG3959 Transketolase, N-termi 93.7 0.088 1.9E-06 48.3 4.3 51 430-480 117-173 (243)
185 PRK05261 putative phosphoketol 93.7 1.9 4E-05 47.7 15.1 210 52-284 450-685 (785)
186 PTZ00409 Sir2 (Silent Informat 93.6 0.079 1.7E-06 51.2 4.1 71 271-342 193-264 (271)
187 COG1013 PorB Pyruvate:ferredox 93.4 0.088 1.9E-06 51.4 4.1 52 431-482 69-121 (294)
188 PTZ00408 NAD-dependent deacety 93.3 0.096 2.1E-06 49.7 4.1 68 273-341 168-236 (242)
189 PF09364 XFP_N: XFP N-terminal 93.3 0.078 1.7E-06 52.2 3.5 33 431-463 139-171 (379)
190 PLN02683 pyruvate dehydrogenas 93.3 1.5 3.3E-05 44.2 12.9 153 11-172 24-197 (356)
191 PRK05261 putative phosphoketol 93.3 0.078 1.7E-06 58.1 3.8 32 431-462 141-172 (785)
192 PRK13012 2-oxoacid dehydrogena 93.2 2 4.2E-05 48.3 14.5 176 52-248 573-761 (896)
193 PRK12315 1-deoxy-D-xylulose-5- 93.2 0.75 1.6E-05 49.6 11.1 153 13-175 277-439 (581)
194 PRK05778 2-oxoglutarate ferred 93.1 1.3 2.8E-05 43.5 11.8 150 16-173 29-203 (301)
195 COG1154 Dxs Deoxyxylulose-5-ph 93.1 0.33 7.2E-06 51.0 7.9 43 431-473 114-162 (627)
196 cd01412 SIRT5_Af1_CobB SIRT5_A 93.1 0.083 1.8E-06 49.6 3.4 63 272-336 159-223 (224)
197 PLN02225 1-deoxy-D-xylulose-5- 93.1 0.39 8.5E-06 52.2 8.8 100 379-482 123-245 (701)
198 PRK05899 transketolase; Review 93.1 0.62 1.3E-05 50.8 10.5 116 52-173 367-486 (624)
199 PRK11866 2-oxoacid ferredoxin 92.8 1.7 3.8E-05 42.1 12.0 147 17-172 19-191 (279)
200 PRK12753 transketolase; Review 92.8 0.097 2.1E-06 57.2 3.8 50 430-479 112-177 (663)
201 PRK07525 sulfoacetaldehyde ace 92.8 0.43 9.3E-06 51.7 8.8 108 63-173 440-562 (588)
202 PRK06163 hypothetical protein; 92.8 7.9 0.00017 35.6 16.4 104 64-173 63-173 (202)
203 PLN02582 1-deoxy-D-xylulose-5- 92.7 0.12 2.7E-06 56.2 4.4 103 377-482 75-200 (677)
204 TIGR00204 dxs 1-deoxy-D-xylulo 92.7 0.12 2.6E-06 56.1 4.3 53 430-482 109-167 (617)
205 PLN02234 1-deoxy-D-xylulose-5- 92.7 2.4 5.2E-05 46.0 14.0 152 14-174 357-518 (641)
206 cd03372 TPP_ComE Thiamine pyro 92.7 2.9 6.3E-05 37.7 12.7 101 65-174 49-156 (179)
207 PRK08617 acetolactate synthase 92.6 0.84 1.8E-05 49.0 10.7 102 66-173 422-536 (552)
208 PRK08327 acetolactate synthase 92.6 0.47 1E-05 51.1 8.8 109 64-173 436-567 (569)
209 TIGR00232 tktlase_bact transke 92.6 0.099 2.1E-06 57.1 3.5 51 430-480 108-174 (653)
210 PRK12754 transketolase; Review 92.5 0.12 2.6E-06 56.3 4.0 51 430-480 112-178 (663)
211 PRK09628 oorB 2-oxoglutarate-a 92.5 2.1 4.4E-05 41.6 12.0 147 18-173 29-201 (277)
212 PRK13761 hypothetical protein; 92.4 1.3 2.8E-05 40.8 9.7 132 205-342 54-210 (248)
213 TIGR02418 acolac_catab acetola 92.4 0.42 9.1E-06 51.2 7.9 105 63-173 413-530 (539)
214 cd01409 SIRT4 SIRT4: Eukaryoti 92.3 0.098 2.1E-06 50.3 2.7 62 271-333 198-260 (260)
215 COG1282 PntB NAD/NADP transhyd 92.3 0.66 1.4E-05 45.6 8.2 40 207-246 297-336 (463)
216 PTZ00089 transketolase; Provis 92.3 0.11 2.4E-06 56.7 3.5 50 430-479 114-179 (661)
217 PLN02269 Pyruvate dehydrogenas 92.0 0.13 2.9E-06 51.7 3.4 51 430-482 136-194 (362)
218 TIGR03186 AKGDH_not_PDH alpha- 92.0 1.5 3.1E-05 49.2 11.5 180 52-248 560-753 (889)
219 TIGR01504 glyox_carbo_lig glyo 91.9 0.27 5.8E-06 53.3 5.9 109 64-174 424-556 (588)
220 TIGR03181 PDH_E1_alph_x pyruva 91.9 1.1 2.3E-05 45.0 9.7 95 78-173 145-246 (341)
221 PRK06546 pyruvate dehydrogenas 91.8 0.9 2E-05 49.1 9.8 105 64-174 414-531 (578)
222 PRK09124 pyruvate dehydrogenas 91.8 3.6 7.8E-05 44.4 14.3 106 63-174 413-531 (574)
223 cd02000 TPP_E1_PDC_ADC_BCADC T 91.7 0.79 1.7E-05 44.9 8.4 109 67-176 113-231 (293)
224 PRK11869 2-oxoacid ferredoxin 91.7 3.8 8.3E-05 39.7 12.9 149 16-172 19-192 (280)
225 PRK06154 hypothetical protein; 91.7 0.67 1.4E-05 49.9 8.5 109 63-174 436-556 (565)
226 PTZ00410 NAD-dependent SIR2; P 91.7 0.44 9.4E-06 47.5 6.5 43 271-313 199-241 (349)
227 PRK06466 acetolactate synthase 91.6 0.89 1.9E-05 49.1 9.4 107 63-174 428-549 (574)
228 cd02018 TPP_PFOR Thiamine pyro 91.6 1.3 2.8E-05 42.0 9.4 97 75-176 87-206 (237)
229 COG3958 Transketolase, C-termi 91.5 1.7 3.7E-05 41.8 9.9 160 15-180 8-175 (312)
230 TIGR02720 pyruv_oxi_spxB pyruv 91.5 1.1 2.4E-05 48.4 10.0 107 64-174 414-533 (575)
231 PRK07710 acetolactate synthase 91.4 0.95 2.1E-05 48.9 9.4 106 63-174 429-549 (571)
232 PRK11269 glyoxylate carboligas 91.4 0.73 1.6E-05 49.9 8.6 109 63-173 424-556 (591)
233 CHL00149 odpA pyruvate dehydro 91.4 1.2 2.6E-05 44.6 9.5 94 78-172 158-258 (341)
234 PRK07979 acetolactate synthase 91.3 4.6 0.0001 43.6 14.6 109 63-174 426-549 (574)
235 PRK08322 acetolactate synthase 91.3 1.1 2.3E-05 48.2 9.6 104 64-173 412-528 (547)
236 PRK08978 acetolactate synthase 91.2 1.1 2.4E-05 48.1 9.7 105 64-174 407-526 (548)
237 PRK06112 acetolactate synthase 91.2 1.3 2.8E-05 47.9 10.2 105 63-173 442-560 (578)
238 PRK07064 hypothetical protein; 91.1 0.89 1.9E-05 48.7 8.7 103 65-173 412-528 (544)
239 TIGR03297 Ppyr-DeCO2ase phosph 91.0 10 0.00022 38.4 15.6 154 14-174 172-337 (361)
240 PF00676 E1_dh: Dehydrogenase 90.9 0.86 1.9E-05 44.8 7.8 104 68-172 111-224 (300)
241 COG1701 Uncharacterized protei 90.9 2.1 4.5E-05 38.9 9.3 134 203-342 54-213 (256)
242 PLN02573 pyruvate decarboxylas 90.9 1.2 2.6E-05 48.2 9.5 106 64-173 434-552 (578)
243 PRK08155 acetolactate synthase 90.8 1.2 2.6E-05 48.0 9.4 106 63-174 424-544 (564)
244 PRK06882 acetolactate synthase 90.8 1.1 2.5E-05 48.3 9.3 107 63-174 426-547 (574)
245 PRK08266 hypothetical protein; 90.8 1.4 3E-05 47.3 9.8 104 65-174 409-526 (542)
246 PRK06725 acetolactate synthase 90.8 0.69 1.5E-05 49.9 7.5 106 63-174 427-546 (570)
247 PRK08527 acetolactate synthase 90.8 1.1 2.5E-05 48.1 9.2 106 63-174 419-539 (563)
248 PLN02470 acetolactate synthase 90.8 1.3 2.7E-05 48.1 9.6 106 63-174 431-558 (585)
249 cd03376 TPP_PFOR_porB_like Thi 90.7 2.2 4.8E-05 40.3 10.1 95 75-174 80-201 (235)
250 TIGR03457 sulphoacet_xsc sulfo 90.7 4.1 8.9E-05 44.1 13.4 157 14-173 381-557 (579)
251 PRK07524 hypothetical protein; 90.5 1.4 3E-05 47.1 9.6 108 63-176 412-532 (535)
252 PRK11867 2-oxoglutarate ferred 90.5 2 4.3E-05 41.9 9.8 106 63-173 74-202 (286)
253 CHL00099 ilvB acetohydroxyacid 90.5 1.4 3.1E-05 47.7 9.7 105 64-174 436-556 (585)
254 PRK08199 thiamine pyrophosphat 90.5 1.3 2.9E-05 47.6 9.4 103 66-174 423-539 (557)
255 PLN02374 pyruvate dehydrogenas 90.4 1.3 2.8E-05 45.7 8.8 94 77-172 223-324 (433)
256 TIGR00118 acolac_lg acetolacta 90.3 0.87 1.9E-05 49.0 7.8 106 63-174 417-537 (558)
257 cd02768 MopB_NADH-Q-OR-NuoG2 M 90.3 1.1 2.3E-05 45.7 8.2 111 205-316 72-191 (386)
258 TIGR03394 indol_phenyl_DC indo 90.2 1.6 3.5E-05 46.7 9.7 104 66-174 411-522 (535)
259 PRK05858 hypothetical protein; 90.0 1.5 3.2E-05 47.1 9.2 102 66-173 415-530 (542)
260 COG1154 Dxs Deoxyxylulose-5-ph 90.0 24 0.00053 37.6 17.5 153 12-173 314-476 (627)
261 PRK12315 1-deoxy-D-xylulose-5- 89.9 0.27 5.9E-06 53.0 3.6 53 430-482 111-169 (581)
262 PRK07449 2-succinyl-5-enolpyru 89.9 0.72 1.6E-05 49.8 6.8 116 52-173 416-549 (568)
263 PRK06457 pyruvate dehydrogenas 89.9 1.7 3.6E-05 46.7 9.5 103 66-174 404-520 (549)
264 PRK06456 acetolactate synthase 89.7 1.6 3.5E-05 47.1 9.3 104 65-174 428-546 (572)
265 PRK06048 acetolactate synthase 89.6 2 4.4E-05 46.2 9.9 149 20-174 371-539 (561)
266 TIGR03254 oxalate_oxc oxalyl-C 89.5 1.7 3.6E-05 46.8 9.2 105 63-173 422-538 (554)
267 PRK09107 acetolactate synthase 89.5 1.5 3.2E-05 47.7 8.8 106 63-174 435-555 (595)
268 PRK08273 thiamine pyrophosphat 89.5 1.8 4E-05 46.9 9.6 104 66-174 423-547 (597)
269 PRK07092 benzoylformate decarb 89.4 1.6 3.4E-05 46.7 8.9 105 63-173 412-530 (530)
270 TIGR03182 PDH_E1_alph_y pyruva 89.4 1.6 3.5E-05 43.2 8.3 108 67-175 119-236 (315)
271 PRK09405 aceE pyruvate dehydro 89.3 14 0.00029 41.8 16.0 178 51-250 564-760 (891)
272 PRK07418 acetolactate synthase 89.2 1.9 4.2E-05 47.0 9.5 154 14-174 387-560 (616)
273 PRK11864 2-ketoisovalerate fer 89.2 4.9 0.00011 39.3 11.3 116 51-170 63-204 (300)
274 PRK08979 acetolactate synthase 89.2 1.8 3.9E-05 46.7 9.2 107 63-174 426-547 (572)
275 KOG2682 NAD-dependent histone 88.9 0.74 1.6E-05 42.5 4.9 65 276-341 211-279 (314)
276 KOG1905 Class IV sirtuins (SIR 88.9 1.1 2.4E-05 42.8 6.2 83 259-342 196-281 (353)
277 COG0028 IlvB Thiamine pyrophos 88.8 1.6 3.5E-05 46.7 8.3 104 66-175 416-533 (550)
278 cd03371 TPP_PpyrDC Thiamine py 88.8 15 0.00032 33.3 13.6 106 63-174 53-164 (188)
279 TIGR00300 conserved hypothetic 88.8 3.1 6.8E-05 41.6 9.5 140 200-342 179-406 (407)
280 PRK06965 acetolactate synthase 88.7 2.4 5.2E-05 45.9 9.8 107 63-174 442-563 (587)
281 TIGR02177 PorB_KorB 2-oxoacid: 88.6 2 4.4E-05 41.8 8.2 107 62-173 57-186 (287)
282 PRK09259 putative oxalyl-CoA d 88.6 1.9 4E-05 46.6 8.8 106 63-174 429-547 (569)
283 TIGR03186 AKGDH_not_PDH alpha- 88.6 0.38 8.3E-06 53.6 3.6 49 430-478 187-248 (889)
284 cd02773 MopB_Res-Cmplx1_Nad11 88.4 1.3 2.8E-05 45.0 7.1 107 205-313 71-185 (375)
285 PRK07789 acetolactate synthase 87.9 9.5 0.00021 41.6 13.8 107 63-174 452-577 (612)
286 PRK06276 acetolactate synthase 87.8 2.2 4.7E-05 46.2 8.8 105 63-173 424-543 (586)
287 TIGR03393 indolpyr_decarb indo 87.8 2.7 5.9E-05 45.0 9.4 101 67-173 413-527 (539)
288 cd01410 SIRT7 SIRT7: Eukaryoti 87.6 0.4 8.8E-06 44.3 2.6 56 271-327 149-205 (206)
289 COG1071 AcoA Pyruvate/2-oxoglu 87.5 3 6.4E-05 41.7 8.6 111 60-171 142-259 (358)
290 TIGR03336 IOR_alpha indolepyru 87.4 3.9 8.4E-05 44.4 10.3 106 66-174 411-531 (595)
291 PRK11865 pyruvate ferredoxin o 87.2 7.1 0.00015 38.2 10.9 117 51-171 63-209 (299)
292 TIGR00759 aceE pyruvate dehydr 86.5 0.62 1.3E-05 51.6 3.6 49 430-478 187-248 (885)
293 TIGR03129 one_C_dehyd_B formyl 86.1 1.9 4.2E-05 44.3 7.0 110 205-316 63-187 (421)
294 COG0846 SIR2 NAD-dependent pro 86.0 0.57 1.2E-05 44.5 2.6 69 271-341 176-246 (250)
295 PRK12474 hypothetical protein; 86.0 1.8 3.9E-05 46.1 6.8 102 64-171 395-517 (518)
296 PRK07586 hypothetical protein; 84.8 2.6 5.7E-05 44.8 7.4 150 14-171 337-513 (514)
297 PRK13012 2-oxoacid dehydrogena 84.8 1.4 3.1E-05 49.4 5.4 49 430-478 201-262 (896)
298 cd05569 PTS_IIB_fructose PTS_I 84.6 3.3 7.1E-05 33.2 6.1 77 222-312 4-81 (96)
299 PF02006 DUF137: Protein of un 84.3 3.7 8E-05 36.1 6.5 121 216-342 2-149 (178)
300 PF00676 E1_dh: Dehydrogenase 84.3 1.2 2.5E-05 43.9 4.1 50 431-482 100-157 (300)
301 cd02750 MopB_Nitrate-R-NarG-li 83.4 1.9 4.1E-05 45.2 5.5 112 205-316 88-212 (461)
302 PRK09405 aceE pyruvate dehydro 83.3 1.5 3.3E-05 49.1 4.7 48 431-478 194-254 (891)
303 cd02752 MopB_Formate-Dh-Na-lik 82.8 2.4 5.1E-05 46.4 6.0 111 205-316 74-212 (649)
304 PRK13936 phosphoheptose isomer 80.8 11 0.00024 34.5 8.9 99 15-113 31-149 (197)
305 cd01407 SIR2-fam SIR2 family o 80.4 1.1 2.5E-05 41.7 2.3 55 273-328 163-218 (218)
306 cd02772 MopB_NDH-1_NuoG2 MopB_ 80.2 4.6 9.9E-05 41.6 6.8 109 205-315 72-193 (414)
307 KOG0523 Transketolase [Carbohy 80.0 2.1 4.5E-05 45.1 4.1 53 429-481 115-174 (632)
308 PRK00414 gmhA phosphoheptose i 80.0 13 0.00029 33.8 9.1 98 15-113 32-149 (192)
309 cd01411 SIR2H SIR2H: Uncharact 79.9 1 2.2E-05 42.3 1.8 46 272-317 166-211 (225)
310 PRK10886 DnaA initiator-associ 79.3 17 0.00036 33.3 9.5 101 14-115 28-149 (196)
311 TIGR03479 DMSO_red_II_alp DMSO 78.9 8.5 0.00018 44.1 9.0 113 205-317 142-267 (912)
312 TIGR01973 NuoG NADH-quinone ox 78.4 4 8.6E-05 44.4 6.0 110 205-316 289-405 (603)
313 COG0541 Ffh Signal recognition 78.2 6.7 0.00015 40.1 7.0 49 205-253 114-162 (451)
314 TIGR00441 gmhA phosphoheptose 78.1 13 0.00029 32.4 8.2 96 18-113 2-117 (154)
315 PLN02980 2-oxoglutarate decarb 78.1 6.8 0.00015 47.8 8.3 104 64-173 767-889 (1655)
316 cd02007 TPP_DXS Thiamine pyrop 77.9 19 0.00042 32.8 9.5 87 78-171 98-188 (195)
317 PF13580 SIS_2: SIS domain; PD 77.7 9.1 0.0002 32.8 6.9 96 15-110 23-138 (138)
318 COG3957 Phosphoketolase [Carbo 77.5 1.8 3.9E-05 46.4 2.8 30 431-460 152-181 (793)
319 COG0021 TktA Transketolase [Ca 77.4 1.5 3.3E-05 46.5 2.3 48 431-478 115-178 (663)
320 COG1915 Uncharacterized conser 77.3 1.3 2.7E-05 42.6 1.5 68 273-343 334-406 (415)
321 cd08769 DAP_dppA_2 Peptidase M 76.0 0.66 1.4E-05 44.6 -0.8 143 17-160 39-205 (270)
322 COG0021 TktA Transketolase [Ca 75.9 18 0.00038 38.9 9.5 158 11-173 354-521 (663)
323 cd01413 SIR2_Af2 SIR2_Af2: Arc 75.7 1.4 3.1E-05 41.2 1.4 45 271-316 165-211 (222)
324 PRK07282 acetolactate synthase 72.6 12 0.00027 40.3 7.8 105 63-174 423-542 (566)
325 cd02774 MopB_Res-Cmplx1_Nad11- 72.6 16 0.00035 37.0 8.2 108 205-313 72-188 (366)
326 PRK13937 phosphoheptose isomer 72.3 22 0.00048 32.2 8.3 100 15-114 26-145 (188)
327 PRK09130 NADH dehydrogenase su 70.5 9.8 0.00021 42.0 6.6 107 205-313 290-404 (687)
328 COG1029 FwdB Formylmethanofura 70.2 14 0.00031 36.6 6.7 110 203-313 230-369 (429)
329 PF00448 SRP54: SRP54-type pro 69.8 13 0.00028 34.0 6.2 46 206-251 16-61 (196)
330 PLN02269 Pyruvate dehydrogenas 68.6 25 0.00054 35.5 8.5 106 61-170 145-256 (362)
331 cd02766 MopB_3 The MopB_3 CD i 67.9 3.4 7.3E-05 43.8 2.2 112 205-316 76-199 (501)
332 TIGR00853 pts-lac PTS system, 67.6 5.7 0.00012 31.7 3.0 33 218-250 3-35 (95)
333 cd00296 SIR2 SIR2 superfamily 67.3 4 8.8E-05 38.0 2.4 45 273-317 165-210 (222)
334 PF02603 Hpr_kinase_N: HPr Ser 67.0 5.9 0.00013 33.5 3.1 51 202-255 64-114 (127)
335 PRK09129 NADH dehydrogenase su 66.9 16 0.00034 41.1 7.4 136 205-340 290-438 (776)
336 PRK10427 putative PTS system f 66.7 22 0.00047 29.4 6.3 84 233-341 20-104 (114)
337 TIGR01591 Fdh-alpha formate de 65.4 8.5 0.00018 42.4 4.8 111 205-316 71-197 (671)
338 cd08663 DAP_dppA_1 Peptidase M 65.3 1.8 3.8E-05 41.5 -0.4 142 17-159 39-204 (266)
339 PRK13938 phosphoheptose isomer 65.1 58 0.0013 29.8 9.5 98 15-113 33-151 (196)
340 cd02767 MopB_ydeP The MopB_yde 64.8 9 0.00019 41.4 4.7 109 205-314 84-203 (574)
341 cd05564 PTS_IIB_chitobiose_lic 64.4 8.7 0.00019 30.7 3.5 31 220-250 1-31 (96)
342 COG0552 FtsY Signal recognitio 64.3 13 0.00027 36.8 5.2 48 205-252 153-200 (340)
343 cd02751 MopB_DMSOR-like The Mo 64.1 12 0.00025 40.8 5.6 113 205-317 79-220 (609)
344 PF02302 PTS_IIB: PTS system, 63.4 7.3 0.00016 30.3 2.9 53 220-284 1-54 (90)
345 PRK10474 putative PTS system f 63.1 43 0.00094 26.2 7.2 82 234-340 2-84 (88)
346 cd00368 Molybdopterin-Binding 63.1 11 0.00024 37.9 4.9 112 205-316 74-198 (374)
347 cd02771 MopB_NDH-1_NuoG2-N7 Mo 63.0 15 0.00032 38.5 6.0 84 205-290 72-158 (472)
348 cd05006 SIS_GmhA Phosphoheptos 62.6 71 0.0015 28.3 9.6 99 15-113 21-139 (177)
349 cd00368 Molybdopterin-Binding 62.3 40 0.00087 33.8 8.8 85 203-290 228-319 (374)
350 cd00281 DAP_dppA Peptidase M55 61.6 2.5 5.4E-05 40.5 -0.2 142 17-159 39-203 (265)
351 KOG0225 Pyruvate dehydrogenase 60.8 5.1 0.00011 39.2 1.8 52 430-482 163-221 (394)
352 PRK02399 hypothetical protein; 59.9 1.3E+02 0.0028 30.8 11.5 76 95-173 264-343 (406)
353 cd02770 MopB_DmsA-EC This CD ( 59.6 16 0.00035 39.8 5.6 113 205-317 81-212 (617)
354 PRK15488 thiosulfate reductase 59.5 17 0.00037 40.7 6.0 109 205-317 120-241 (759)
355 cd02201 FtsZ_type1 FtsZ is a G 59.4 25 0.00055 34.6 6.5 77 206-285 73-154 (304)
356 PRK09330 cell division protein 59.2 25 0.00053 35.8 6.4 81 205-285 85-167 (384)
357 PRK00771 signal recognition pa 58.5 31 0.00067 35.9 7.1 48 206-253 110-157 (437)
358 PRK09939 putative oxidoreducta 58.4 7.7 0.00017 43.3 2.9 108 205-313 128-247 (759)
359 PRK11302 DNA-binding transcrip 58.1 23 0.00051 34.1 6.0 97 203-311 113-210 (284)
360 cd02016 TPP_E1_OGDC_like Thiam 57.9 43 0.00093 32.2 7.5 95 77-172 140-245 (265)
361 COG1454 EutG Alcohol dehydroge 57.8 45 0.00098 33.9 8.0 74 205-285 14-94 (377)
362 TIGR03127 RuMP_HxlB 6-phospho 57.8 64 0.0014 28.7 8.4 91 16-115 19-112 (179)
363 cd07035 TPP_PYR_POX_like Pyrim 56.9 29 0.00062 30.0 5.8 45 437-481 46-90 (155)
364 PF00766 ETF_alpha: Electron t 56.8 11 0.00025 29.3 2.8 66 220-289 8-75 (86)
365 cd02774 MopB_Res-Cmplx1_Nad11- 56.7 13 0.00028 37.6 4.0 39 209-247 212-254 (366)
366 cd05005 SIS_PHI Hexulose-6-pho 56.7 77 0.0017 28.2 8.7 92 17-116 23-116 (179)
367 cd02755 MopB_Thiosulfate-R-lik 56.4 7 0.00015 40.9 2.1 108 205-316 77-199 (454)
368 TIGR00065 ftsZ cell division p 56.4 32 0.00069 34.6 6.7 80 206-285 90-171 (349)
369 PRK05333 NAD-dependent deacety 56.4 17 0.00037 35.4 4.6 41 202-254 3-43 (285)
370 TIGR01701 Fdhalpha-like oxidor 56.4 14 0.00031 41.2 4.6 108 205-313 119-237 (743)
371 COG1071 AcoA Pyruvate/2-oxoglu 56.1 9.4 0.0002 38.2 2.8 51 430-482 134-193 (358)
372 cd02753 MopB_Formate-Dh-H Form 55.9 17 0.00036 38.6 4.9 106 205-311 72-193 (512)
373 cd02757 MopB_Arsenate-R This C 54.9 20 0.00044 38.2 5.4 110 205-316 82-206 (523)
374 cd08193 HVD 5-hydroxyvalerate 54.9 35 0.00076 34.7 6.8 75 206-285 12-91 (376)
375 cd02759 MopB_Acetylene-hydrata 54.6 11 0.00024 39.6 3.3 112 205-316 76-203 (477)
376 KOG0780 Signal recognition par 54.6 34 0.00073 34.6 6.2 46 207-253 117-163 (483)
377 cd08770 DAP_dppA_3 Peptidase M 53.4 7.2 0.00016 37.3 1.4 143 17-161 39-205 (263)
378 cd05565 PTS_IIB_lactose PTS_II 53.4 17 0.00036 29.3 3.3 56 220-288 2-57 (99)
379 cd08191 HHD 6-hydroxyhexanoate 53.4 41 0.0009 34.3 7.1 75 207-285 10-87 (386)
380 cd08190 HOT Hydroxyacid-oxoaci 53.0 43 0.00093 34.5 7.2 75 206-285 9-88 (414)
381 cd02012 TPP_TK Thiamine pyroph 52.7 72 0.0016 30.3 8.3 102 66-173 113-227 (255)
382 PRK09860 putative alcohol dehy 51.8 48 0.001 33.8 7.3 77 205-286 16-97 (383)
383 PRK10624 L-1,2-propanediol oxi 51.6 42 0.00091 34.2 6.8 77 205-286 15-96 (382)
384 cd08176 LPO Lactadehyde:propan 51.4 46 0.00099 33.8 7.0 77 205-286 13-94 (377)
385 cd06311 PBP1_ABC_sugar_binding 51.0 2.1E+02 0.0047 26.8 14.5 149 14-174 110-273 (274)
386 cd08181 PPD-like 1,3-propanedi 51.0 48 0.001 33.4 7.1 75 206-285 12-91 (357)
387 TIGR00829 FRU PTS system, fruc 50.9 65 0.0014 25.1 6.2 67 233-312 15-81 (85)
388 PRK13398 3-deoxy-7-phosphohept 50.7 73 0.0016 30.7 7.9 73 204-289 39-121 (266)
389 PRK11337 DNA-binding transcrip 50.6 1.1E+02 0.0024 29.6 9.5 94 18-115 131-227 (292)
390 cd08186 Fe-ADH8 Iron-containin 50.4 43 0.00093 34.1 6.6 75 207-286 10-93 (383)
391 TIGR02638 lactal_redase lactal 50.3 43 0.00093 34.1 6.6 76 206-286 15-95 (379)
392 PRK15482 transcriptional regul 50.2 47 0.001 32.1 6.7 72 204-287 121-192 (285)
393 COG1737 RpiR Transcriptional r 50.1 1.3E+02 0.0028 29.1 9.7 94 18-115 121-217 (281)
394 cd02760 MopB_Phenylacetyl-CoA- 50.0 50 0.0011 37.1 7.5 81 237-317 127-217 (760)
395 cd08185 Fe-ADH1 Iron-containin 49.6 51 0.0011 33.5 7.1 76 206-286 12-92 (380)
396 TIGR01553 formate-DH-alph form 49.5 16 0.00035 42.2 3.7 79 237-316 175-263 (1009)
397 cd08189 Fe-ADH5 Iron-containin 49.2 49 0.0011 33.5 6.9 76 206-286 12-92 (374)
398 cd06348 PBP1_ABC_ligand_bindin 48.8 53 0.0011 32.5 7.0 61 205-267 52-112 (344)
399 PRK15454 ethanol dehydrogenase 48.7 51 0.0011 33.8 6.9 75 206-285 35-114 (395)
400 cd08178 AAD_C C-terminal alcoh 48.6 31 0.00068 35.3 5.4 75 207-286 10-87 (398)
401 cd06586 TPP_enzyme_PYR Pyrimid 48.5 63 0.0014 27.6 6.6 43 437-481 47-90 (154)
402 PF04951 Peptidase_M55: D-amin 48.4 3.6 7.9E-05 39.4 -1.4 145 17-161 39-206 (265)
403 cd08192 Fe-ADH7 Iron-containin 48.4 59 0.0013 32.9 7.3 76 206-286 10-90 (370)
404 COG3142 CutC Uncharacterized p 48.0 2.4E+02 0.0052 26.4 11.2 161 75-253 23-200 (241)
405 cd08194 Fe-ADH6 Iron-containin 47.9 49 0.0011 33.6 6.6 76 206-286 9-89 (375)
406 COG2247 LytB Putative cell wal 47.7 47 0.001 32.6 5.9 43 237-288 43-86 (337)
407 KOG2684 Sirtuin 5 and related 47.3 19 0.0004 36.4 3.3 64 276-341 279-342 (412)
408 COG0794 GutQ Predicted sugar p 46.8 91 0.002 28.6 7.4 95 206-326 26-136 (202)
409 cd05007 SIS_Etherase N-acetylm 46.8 1.3E+02 0.0028 28.7 9.0 101 15-115 37-158 (257)
410 PF07085 DRTGG: DRTGG domain; 46.4 22 0.00047 28.7 3.1 39 213-255 56-94 (105)
411 cd06344 PBP1_ABC_ligand_bindin 46.3 55 0.0012 32.2 6.6 63 204-268 50-112 (332)
412 cd08188 Fe-ADH4 Iron-containin 46.2 62 0.0013 32.9 7.0 77 205-286 13-94 (377)
413 cd02016 TPP_E1_OGDC_like Thiam 45.8 13 0.00029 35.6 2.0 48 431-478 112-171 (265)
414 TIGR00759 aceE pyruvate dehydr 45.5 1.7E+02 0.0036 33.2 10.4 171 59-248 567-750 (885)
415 COG0279 GmhA Phosphoheptose is 45.3 2.2E+02 0.0048 25.3 9.3 99 14-113 28-147 (176)
416 PRK07860 NADH dehydrogenase su 45.2 27 0.00059 39.4 4.6 109 205-314 297-417 (797)
417 cd08170 GlyDH Glycerol dehydro 45.1 33 0.00072 34.4 4.8 72 207-285 10-85 (351)
418 PRK11557 putative DNA-binding 45.0 69 0.0015 30.8 6.9 101 203-315 113-214 (278)
419 cd08551 Fe-ADH iron-containing 44.8 66 0.0014 32.5 7.0 76 206-286 9-89 (370)
420 TIGR00274 N-acetylmuramic acid 44.7 97 0.0021 30.3 7.8 156 15-175 45-223 (291)
421 COG1707 ACT domain-containing 44.7 80 0.0017 27.8 6.3 59 201-261 122-182 (218)
422 KOG0081 GTPase Rab27, small G 44.4 64 0.0014 28.3 5.6 38 220-257 125-166 (219)
423 PF13380 CoA_binding_2: CoA bi 44.4 45 0.00097 27.6 4.7 41 17-57 68-108 (116)
424 PF07905 PucR: Purine cataboli 44.4 75 0.0016 26.5 6.1 50 204-253 57-106 (123)
425 TIGR01425 SRP54_euk signal rec 44.3 61 0.0013 33.6 6.6 48 206-253 115-162 (429)
426 cd08183 Fe-ADH2 Iron-containin 44.1 65 0.0014 32.6 6.8 70 207-285 10-83 (374)
427 cd02762 MopB_1 The MopB_1 CD i 43.9 34 0.00074 36.6 5.0 107 205-311 72-199 (539)
428 cd08187 BDH Butanol dehydrogen 43.8 69 0.0015 32.6 7.0 74 206-286 15-95 (382)
429 COG3414 SgaB Phosphotransferas 43.7 33 0.00073 27.2 3.6 55 219-285 2-57 (93)
430 COG4231 Indolepyruvate ferredo 43.2 1E+02 0.0022 33.2 8.1 102 67-171 437-552 (640)
431 COG1737 RpiR Transcriptional r 42.9 55 0.0012 31.8 5.8 101 202-314 114-215 (281)
432 KOG0369 Pyruvate carboxylase [ 42.8 2.6E+02 0.0057 30.5 10.8 119 18-160 96-222 (1176)
433 PRK10892 D-arabinose 5-phospha 42.3 1.5E+02 0.0032 29.3 9.0 94 19-116 38-135 (326)
434 cd02772 MopB_NDH-1_NuoG2 MopB_ 42.3 34 0.00074 35.1 4.5 46 202-247 235-284 (414)
435 TIGR03845 sulfopyru_alph sulfo 41.9 26 0.00057 30.7 3.1 23 434-457 69-91 (157)
436 PF02146 SIR2: Sir2 family; I 41.8 18 0.00039 32.4 2.1 18 273-290 159-176 (178)
437 PF04273 DUF442: Putative phos 41.7 2E+02 0.0042 23.6 8.0 76 21-98 20-108 (110)
438 PRK10867 signal recognition pa 41.6 79 0.0017 32.8 7.0 49 205-253 114-163 (433)
439 TIGR01012 Sa_S2_E_A ribosomal 41.2 1.3E+02 0.0028 27.5 7.5 72 207-289 48-120 (196)
440 cd06380 PBP1_iGluR_AMPA N-term 40.8 57 0.0012 32.9 5.9 59 206-268 50-108 (382)
441 COG2121 Uncharacterized protei 40.1 3E+02 0.0064 25.4 9.4 103 16-144 79-184 (214)
442 COG0677 WecC UDP-N-acetyl-D-ma 40.1 1.5E+02 0.0033 30.2 8.3 192 81-284 180-395 (436)
443 cd02761 MopB_FmdB-FwdB The Mop 40.0 53 0.0011 33.6 5.5 45 202-246 219-267 (415)
444 PF06711 DUF1198: Protein of u 40.0 22 0.00047 30.3 2.1 30 221-250 11-40 (148)
445 TIGR01580 narG respiratory nit 40.0 62 0.0013 37.9 6.3 105 238-342 202-316 (1235)
446 PF02593 dTMP_synthase: Thymid 39.8 55 0.0012 30.5 4.9 49 203-251 60-108 (217)
447 TIGR01162 purE phosphoribosyla 39.8 1.9E+02 0.0042 25.4 8.0 27 13-39 10-36 (156)
448 PRK11302 DNA-binding transcrip 39.5 2.2E+02 0.0048 27.2 9.6 89 18-110 119-210 (284)
449 cd08175 G1PDH Glycerol-1-phosp 39.4 67 0.0015 32.2 6.0 76 207-286 10-89 (348)
450 PLN02727 NAD kinase 39.4 2E+02 0.0043 32.8 9.8 89 13-104 268-370 (986)
451 PRK04175 rpl7ae 50S ribosomal 39.3 74 0.0016 26.6 5.3 45 207-251 34-78 (122)
452 COG2006 Uncharacterized conser 39.1 1.3E+02 0.0028 29.0 7.3 81 202-284 57-141 (293)
453 PF00465 Fe-ADH: Iron-containi 38.7 23 0.0005 35.8 2.5 74 207-285 10-86 (366)
454 PF02776 TPP_enzyme_N: Thiamin 38.2 1E+02 0.0022 27.2 6.4 43 438-481 52-95 (172)
455 cd06338 PBP1_ABC_ligand_bindin 38.0 80 0.0017 31.1 6.3 62 205-268 56-118 (345)
456 TIGR00644 recJ single-stranded 37.9 1.4E+02 0.003 32.1 8.4 80 205-290 41-124 (539)
457 PRK08285 cobH precorrin-8X met 37.7 81 0.0017 29.1 5.6 55 203-257 135-191 (208)
458 TIGR00679 hpr-ser Hpr(Ser) kin 37.7 78 0.0017 31.1 5.8 50 203-255 66-115 (304)
459 cd01020 TroA_b Metal binding p 37.6 1.1E+02 0.0023 29.3 6.9 51 200-251 187-237 (264)
460 COG1810 Uncharacterized protei 37.4 65 0.0014 29.9 4.9 86 164-264 39-124 (224)
461 PRK13600 putative ribosomal pr 37.4 90 0.0019 24.3 5.0 46 207-253 17-62 (84)
462 COG3925 N-terminal domain of t 37.3 37 0.0008 26.8 2.8 30 276-312 39-68 (103)
463 PRK11337 DNA-binding transcrip 37.2 70 0.0015 31.0 5.6 100 203-314 125-225 (292)
464 TIGR02166 dmsA_ynfE anaerobic 37.1 1.1E+02 0.0025 34.4 8.0 112 205-316 126-260 (797)
465 PRK05428 HPr kinase/phosphoryl 36.9 79 0.0017 31.1 5.8 51 203-256 66-116 (308)
466 PRK11557 putative DNA-binding 36.9 3E+02 0.0064 26.3 10.0 91 18-114 119-214 (278)
467 PF04015 DUF362: Domain of unk 36.7 1.2E+02 0.0025 27.7 6.8 83 202-284 19-110 (206)
468 cd05005 SIS_PHI Hexulose-6-pho 36.4 74 0.0016 28.3 5.3 69 202-287 17-85 (179)
469 cd06345 PBP1_ABC_ligand_bindin 36.2 1E+02 0.0023 30.3 6.9 46 208-255 55-100 (344)
470 PRK12570 N-acetylmuramic acid- 36.2 1.9E+02 0.004 28.4 8.4 101 15-115 46-167 (296)
471 PRK13602 putative ribosomal pr 35.9 93 0.002 24.0 5.0 45 208-253 16-60 (82)
472 TIGR00789 flhB_rel flhB C-term 35.3 54 0.0012 25.4 3.5 32 219-253 16-47 (82)
473 cd02771 MopB_NDH-1_NuoG2-N7 Mo 35.2 61 0.0013 33.9 5.2 44 205-248 252-295 (472)
474 PF00289 CPSase_L_chain: Carba 35.2 71 0.0015 26.2 4.5 46 15-60 61-108 (110)
475 TIGR03677 rpl7ae 50S ribosomal 35.2 96 0.0021 25.7 5.3 45 207-251 30-74 (117)
476 cd06347 PBP1_ABC_ligand_bindin 35.2 1.2E+02 0.0025 29.6 7.0 44 210-255 57-100 (334)
477 TIGR02483 PFK_mixed phosphofru 35.2 1E+02 0.0022 30.7 6.4 43 15-57 81-123 (324)
478 PRK10499 PTS system N,N'-diace 35.1 48 0.001 27.0 3.4 99 219-342 4-102 (106)
479 TIGR00959 ffh signal recogniti 35.0 1.1E+02 0.0025 31.6 6.9 70 208-283 116-188 (428)
480 PRK09130 NADH dehydrogenase su 34.6 55 0.0012 36.2 4.9 39 209-247 428-470 (687)
481 PF01248 Ribosomal_L7Ae: Ribos 34.3 80 0.0017 24.8 4.6 46 208-253 20-65 (95)
482 cd06366 PBP1_GABAb_receptor Li 34.2 1E+02 0.0022 30.5 6.4 57 210-268 56-114 (350)
483 PRK09590 celB cellobiose phosp 34.1 31 0.00067 28.0 2.1 33 219-251 2-34 (104)
484 COG2204 AtoC Response regulato 34.0 5.8E+02 0.013 26.8 12.0 169 46-251 23-197 (464)
485 cd07039 TPP_PYR_POX Pyrimidine 33.6 1.9E+02 0.0041 25.4 7.3 39 420-461 62-100 (164)
486 cd06351 PBP1_iGluR_N_LIVBP_lik 33.6 90 0.0019 30.2 5.8 60 206-268 50-111 (328)
487 cd08173 Gro1PDH Sn-glycerol-1- 33.5 84 0.0018 31.3 5.6 40 206-246 10-52 (339)
488 PRK10892 D-arabinose 5-phospha 33.4 79 0.0017 31.2 5.4 45 206-251 34-78 (326)
489 COG0777 AccD Acetyl-CoA carbox 32.9 1.5E+02 0.0032 28.6 6.5 37 430-466 130-173 (294)
490 COG0549 ArcC Carbamate kinase 32.9 1.4E+02 0.003 29.0 6.4 62 210-295 175-243 (312)
491 PRK01018 50S ribosomal protein 32.8 1.1E+02 0.0024 24.4 5.2 43 208-251 21-63 (99)
492 PF06792 UPF0261: Uncharacteri 32.8 5.6E+02 0.012 26.3 13.3 76 95-173 263-342 (403)
493 TIGR00162 conserved hypothetic 32.6 3.8E+02 0.0082 24.3 9.8 129 15-158 34-164 (188)
494 PRK04020 rps2P 30S ribosomal p 32.6 2.4E+02 0.0053 25.9 7.9 72 207-289 54-126 (204)
495 cd02754 MopB_Nitrate-R-NapA-li 32.5 36 0.00077 36.6 2.9 107 205-311 73-196 (565)
496 PF12804 NTP_transf_3: MobA-li 32.5 3.1E+02 0.0068 23.3 9.8 96 13-110 23-123 (160)
497 COG2086 FixA Electron transfer 32.4 92 0.002 29.9 5.3 51 203-253 94-145 (260)
498 COG1013 PorB Pyruvate:ferredox 32.4 4.9E+02 0.011 25.5 11.0 114 52-170 65-201 (294)
499 PF12813 XPG_I_2: XPG domain c 32.3 80 0.0017 30.0 4.9 39 208-251 6-47 (246)
500 KOG0523 Transketolase [Carbohy 32.3 2.4E+02 0.0051 30.4 8.6 203 18-251 324-538 (632)
No 1
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.8e-98 Score=778.50 Aligned_cols=448 Identities=31% Similarity=0.491 Sum_probs=393.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
.++++|+|++.|+++||++|||+||+.+++++|+|.+.+|++|.+|||++|++||+||+|+|||||||++|+|||++|++
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~ 80 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLL 80 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++|+.|++|||+|||++++..+|++.||+.|+..+++|++||++++.+++++++.+++||+.|.++|||||||+||.
T Consensus 81 tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 81 TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCH-HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVN-SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
|++.++.+........ .+...+...+ +.+++++++|.+||||+|++|+|+.++++.+++++|||++|+||++
T Consensus 161 Dv~~~~~~~~~~~~~~-------~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~ 233 (550)
T COG0028 161 DVLAAEAEEPGPEPAI-------LPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVT 233 (550)
T ss_pred hHhhcccccccccccc-------cccCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEE
Confidence 9999997653211110 0122233333 8899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|++|||++|++||+|+|.. .+.++++||+||+||++++++.++ + ..|.++.++||||+|+.++++.. +++
T Consensus 234 t~~gkg~~p~~hp~~lG~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~-~~f~~~~~ii~iDidp~ei~k~~~~~~ 311 (550)
T COG0028 234 TLMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG-Y-SGFAPPAAIIHIDIDPAEIGKNYPVDV 311 (550)
T ss_pred ccCcCccCCCCCccccccccccccHHHHHHhhcCCEEEEecCCCcccccc-h-hhhCCcCCEEEEeCChHHhCCCCCCCe
Confidence 9999999999999999852 457889999999999999987765 2 33333323999999999997654 599
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
.+++|++.+|++|.+.++.. ...|.+.+.+.++++........ ......+.++++.|++.+ ++|.|++
T Consensus 312 ~i~gD~~~~l~~L~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~v~~~l~~~~----~~daiv~ 379 (550)
T COG0028 312 PIVGDAKATLEALLEELKPE------RAAWLEELLEARAAYRDLALEEL--ADDGIKPQYVIKVLRELL----PDDAIVV 379 (550)
T ss_pred eEeccHHHHHHHHHHhhhhc------chHHHHHHHHHHHhhhhhhhhcc--CCCccCHHHHHHHHHHhC----CCCeEEE
Confidence 99999999999999998642 34688877766655543322111 112236888999999988 8889999
Q ss_pred eC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
+| |.++.|..++ ++...|++|+.++++|+||||+|+|||||++.|+|+||+|+|||||+|++|||||++||++|+++|
T Consensus 380 ~d~G~~~~w~a~~-~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~iv 458 (550)
T COG0028 380 TDVGQHQMWAARY-FDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIV 458 (550)
T ss_pred eCCcHHHHHHHHh-cccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEE
Confidence 88 6778877665 588899999999999999999999999999999999999999999999999999999999999875
No 2
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=5.5e-96 Score=709.68 Aligned_cols=470 Identities=49% Similarity=0.829 Sum_probs=434.9
Q ss_pred cccccCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590 4 SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV 83 (482)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t 83 (482)
.-+++++..++++++.+++.|+++||+|+||+.|.++.++..+.+..||+||.+|||++|+|+|++|+|+|||||||+++
T Consensus 4 ~~~~~~~~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqalGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVv 83 (571)
T KOG1185|consen 4 LLFKVDKASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQALGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVV 83 (571)
T ss_pred chhcccccccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHcCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEe
Confidence 44678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 84 SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 84 ~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+|||++|+++|++||+.++.|||+|+|..++.+.++|+||++||..+++|+|||+.+++++++++..+++|++.|++|+|
T Consensus 84 sGPGl~hal~gv~NA~~n~wPll~IgGsa~~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~P 163 (571)
T KOG1185|consen 84 SGPGLTHALAGVANAQMNCWPLLLIGGSASTLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRP 163 (571)
T ss_pred cCChHHHHHHHhhhhhhccCcEEEEecccchhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCcchhcc-ccChhHHH---HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHH
Q 011590 164 GGCYLDLPTDVLHQ-TISVSEAE---KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239 (482)
Q Consensus 164 gPv~l~iP~dv~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~ 239 (482)
||+|+++|.|+... ...+.+.. ..+. ...++.+.++++.+++++++|++||||++++|.|+.++.+++.|+
T Consensus 164 G~~yvD~P~d~v~~~~~~e~~~~~~~p~~~-----~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~ 238 (571)
T KOG1185|consen 164 GPVYVDLPADVVLPSKMVEKEIDVSEPQPP-----IPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLR 238 (571)
T ss_pred CceEEecccceeeeecccccccccCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHH
Confidence 99999999995443 33332211 1110 112235677889999999999999999999999999999999999
Q ss_pred HHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590 240 KLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR 319 (482)
Q Consensus 240 ~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~ 319 (482)
+|.|.+|+|++-|+||||++|++||++++.++..+|++||++|++|+|++|...||.++.|+++.|+|+||.++++++.+
T Consensus 239 ~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n 318 (571)
T KOG1185|consen 239 KFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNN 318 (571)
T ss_pred HHHHhcCCCcccCcccccCCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred --CCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590 320 --KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397 (482)
Q Consensus 320 --~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 397 (482)
++++.|.+|+..++.+|.+.+...+.+-...+.|++.+++..++++.+.++....+..++++.++++.+++.| |
T Consensus 319 ~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L----~ 394 (571)
T KOG1185|consen 319 FVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELL----P 394 (571)
T ss_pred cCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhc----C
Confidence 7899999999999999999998865555555689999999888888877776666778899999999999999 8
Q ss_pred -CCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 398 -PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 398 -~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
+|+|+|+||++++..+|+.++.+.|++++..+.||+||.|+++|||||++.|+++|+++.||++|.|+.+|++|++|||
T Consensus 395 ~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~vR~~ 474 (571)
T KOG1185|consen 395 NDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFVRYK 474 (571)
T ss_pred CCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
||+++|
T Consensus 475 Lpvv~v 480 (571)
T KOG1185|consen 475 LPVVIV 480 (571)
T ss_pred CCeEEE
Confidence 999875
No 3
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=1.5e-90 Score=738.98 Aligned_cols=454 Identities=28% Similarity=0.384 Sum_probs=388.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH 90 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N 90 (482)
.++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+|||+||+|+| ||++||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 5789999999999999999999999999999999965 4899999999999999999999999 9999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++||.+++|||+|+|+.++...+++.+|++||..+|+++|||++++.+++++.+.+++|++.|+++|+|||||+|
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~i 161 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDL 161 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++..... ..+ .+...+.++++.+++++++|.+||||+|++|.|+.++++.++|.+|||++|+||+
T Consensus 162 P~Dv~~~~~~~~~~~-~~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~ 234 (588)
T TIGR01504 162 PFDVQVAEIEFDPDT-YEP------LPVYKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVI 234 (588)
T ss_pred CcchhhcccCCcccc-ccc------ccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeE
Confidence 999998876531100 000 0112234567899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590 251 PTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P 321 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~ 321 (482)
||++|||+||++||+|+|.. .++++++||+||+||++++++.+.++ ..+.++.++||||.|+.++++.+ +
T Consensus 235 tt~~gkg~~p~~hpl~~G~~g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~-~~~~~~~~~I~id~d~~~i~~~~~~ 313 (588)
T TIGR01504 235 PTLMGWGCIPDDHELMAGMVGLQTSHRYGNATLLESDFVFGIGNRWANRHTGSV-DVYTEGRKFVHVDIEPTQIGRVFAP 313 (588)
T ss_pred EcCccCCCCCCCChhhCcCCCCCCCcHHHHHHHHhCCEEEEECCCCCccccCcc-cccCCCCeEEEeeCCHHHhcCcCCC
Confidence 99999999999999999842 35689999999999999987665433 33566788999999999997655 5
Q ss_pred ceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCC
Q 011590 322 HLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399 (482)
Q Consensus 322 ~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 399 (482)
++.+++|+..+|++|.+.+...... ......|.+.+.+.++++... ...++.++++..+++.|++.+ +++
T Consensus 314 ~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~p~~~~~~l~~~l----~~d 385 (588)
T TIGR01504 314 DLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRK----THFDNVPVKPQRVYEEMNKAF----GRD 385 (588)
T ss_pred CeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCccc----ccCCCCCcCHHHHHHHHHHhC----CCC
Confidence 9999999999999999876432110 012245665544433222111 111234688999999999998 999
Q ss_pred cEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 400 PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 400 ~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
.+++.|++++..+...+|+...|++|+.+++||+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+
T Consensus 386 ~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpv 465 (588)
T TIGR01504 386 VCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPY 465 (588)
T ss_pred CEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence 99999955544334456688889999999899999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 466 v~i 468 (588)
T TIGR01504 466 IHV 468 (588)
T ss_pred EEE
Confidence 875
No 4
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.5e-90 Score=736.94 Aligned_cols=459 Identities=46% Similarity=0.764 Sum_probs=395.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
++++|+|++.|+++||+||||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 3 ~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~ 82 (554)
T TIGR03254 3 TDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLT 82 (554)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhhcCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHH
Confidence 47999999999999999999999999999999888788999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCccc--CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 94 GLSNGMINTWPIVMISGSCDQKD--FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
||++|+.+++|||+|+|+.+... .+++.+|++||..+|+++|||++++++++++++.+++|++.|+++|||||||+||
T Consensus 83 gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 83 ALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999998774 3567899999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++.......... .........+++..+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++
T Consensus 163 ~Dv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t 239 (554)
T TIGR03254 163 AAVLGQTMEAEKAKKTLVK---VVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLP 239 (554)
T ss_pred HHHhhcccccccccccccc---ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEE
Confidence 9999988763211000000 0001112345678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHH
Q 011590 252 TPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAK 330 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~ 330 (482)
|+++||+||++||+++|...++++++||+||++|++++++.++++...|.+++++||||.|+..++..+ +++.+.+|++
T Consensus 240 t~~gkg~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~ 319 (554)
T TIGR03254 240 MSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIG 319 (554)
T ss_pred cCCcceeCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHH
Confidence 999999999999999999888999999999999999998777666455667789999999999987654 4999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC--CcEEEeCchh
Q 011590 331 KVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP--APILVSEGAN 408 (482)
Q Consensus 331 ~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~i~v~eg~~ 408 (482)
.+|++|.+.++.... .....|.+.+.+.++++.............++++..+++.|++.+ ++ +.++++||++
T Consensus 320 ~~l~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~~~ivv~d~~~ 393 (554)
T TIGR03254 320 SVVQALLSAAKNGGV--KPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVL----KDNPDIYLVNEGAN 393 (554)
T ss_pred HHHHHHHHHhhhccc--cchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhc----CCCCCEEEEeCCch
Confidence 999999998864211 123468776655555443222111112335789999999999988 64 6788889877
Q ss_pred HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 409 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
+.++..++++...|++|+.++++|+|||++|+|||+++| ++++||+|+|||||+|++|||+|++||++|+++|
T Consensus 394 ~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~v~~v 466 (554)
T TIGR03254 394 TLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLPVCVV 466 (554)
T ss_pred HHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCCEEEE
Confidence 777777778888999999998999999999999999999 4899999999999999999999999999999865
No 5
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=8.9e-90 Score=732.72 Aligned_cols=464 Identities=45% Similarity=0.767 Sum_probs=395.9
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
-..++++++|++.|+++||+||||+||+.++++++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 7 ~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 86 (569)
T PRK09259 7 LQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLN 86 (569)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhCCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34569999999999999999999999999999999988788999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCccc--CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKD--FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
+++||++|+.+++|||+|+|+.++.. .+++.+|++||..+|+++|||++++++++++++.+++||+.|+++|||||||
T Consensus 87 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 166 (569)
T PRK09259 87 GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYL 166 (569)
T ss_pred HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEE
Confidence 99999999999999999999988764 3567899999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+||.|++.++++.......+. .+ ......+.+++..+++++++|.+||||+|++|.|++++++.+++.+|||++|+|
T Consensus 167 ~iP~Dv~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iP 243 (569)
T PRK09259 167 DLPAKVLAQTMDADEALTSLV-KV--VDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIP 243 (569)
T ss_pred EeCHHHhhCcccccccccccc-cc--cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCC
Confidence 999999998876321100000 00 001123345678899999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEec
Q 011590 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVG 327 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~ 327 (482)
|++|+++||+||++||+|+|...++++++||+||+||++++++.++++...|.++.++||||.|+.+++..+ .++.+.+
T Consensus 244 V~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~ 323 (569)
T PRK09259 244 FLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVG 323 (569)
T ss_pred EEecccccccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEec
Confidence 999999999999999999999888899999999999999987765554445666789999999999987654 5899999
Q ss_pred cHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeCch
Q 011590 328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA 407 (482)
Q Consensus 328 D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~ 407 (482)
|++.+|++|.+.++.... .....|.+++.+.++++.............++++..+++.|++.+.. ++|.++++||+
T Consensus 324 D~~~~L~~L~~~l~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~--~~d~iv~~~~~ 399 (569)
T PRK09259 324 DIGSVMQALLAGLKQNTF--KAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKE--NPDIYLVNEGA 399 (569)
T ss_pred CHHHHHHHHHHHhhhccc--cchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCC--CCCEEEEeCch
Confidence 999999999998864211 12356877666555544322221111233568889999999999821 23778888888
Q ss_pred hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 408 NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
++.++.+++++...|++++.++++|+|||++|+|||+++| ++++||+++|||||+|++|||+|++||++||++|
T Consensus 400 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi~~v 473 (569)
T PRK09259 400 NTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPVTVV 473 (569)
T ss_pred HHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCEEEE
Confidence 7777777777888899999888899999999999999999 5899999999999999999999999999999875
No 6
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=9.4e-90 Score=732.41 Aligned_cols=457 Identities=24% Similarity=0.375 Sum_probs=387.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
.++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 4789999999999999999999999999999999965 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++||.+++|||+|+|++++...+++.+|++||..+|+++|||+.++++++++++.+++|++.|.++++|||||+||
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++... ..+. ........+...++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+||+|
T Consensus 163 ~Dv~~~~~~~~~--~~~~-~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~t 239 (572)
T PRK08979 163 KDCLNPAILHPY--EYPE-SIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVS 239 (572)
T ss_pred HhHhhhhhcccc--cCCc-ccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEE
Confidence 999987765310 0000 0000000112234677899999999999999999999999899999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|+++||+||++||+|+|.. .++++++||+||+||++++++.+.+ ...+.++.++||||.|+..+++.+ +++
T Consensus 240 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~~ 318 (572)
T PRK08979 240 TLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNN-LEKYCPNATILHIDIDPSSISKTVRVDI 318 (572)
T ss_pred cccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEEcCCCCccccCc-hhhcCCCCeEEEEECCHHHhCCccCCce
Confidence 9999999999999999953 4578999999999999998876533 333566789999999999997654 499
Q ss_pred eEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 401 (482)
.+++|++.+|++|.+.+.+.... ......|.+.+.+++.++... ......++++.++++.|++.+ +++.+
T Consensus 319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l----~~d~i 390 (572)
T PRK08979 319 PIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLA----YDKSSERIKPQQVIETLYKLT----NGDAY 390 (572)
T ss_pred EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchh----ccCCCCCcCHHHHHHHHHHhc----CCCeE
Confidence 99999999999999887543110 011235766554433322110 111234688888999999988 88999
Q ss_pred EEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590 402 LVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 480 (482)
Q Consensus 402 ~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~ 480 (482)
++.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||+++|+|+|+||+|+|||||+|++|||||++|||||++
T Consensus 391 vv~d~G~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~ 469 (572)
T PRK08979 391 VASDVGQHQMFA-ALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVK 469 (572)
T ss_pred EEECCcHHHHHH-HHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeE
Confidence 9999655 4554 4566888899999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011590 481 SI 482 (482)
Q Consensus 481 ~~ 482 (482)
+|
T Consensus 470 ~v 471 (572)
T PRK08979 470 II 471 (572)
T ss_pred EE
Confidence 75
No 7
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-89 Score=726.42 Aligned_cols=452 Identities=30% Similarity=0.504 Sum_probs=392.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
+++++|+|++.|+++||++|||+||+++.++++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 4 ~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~ 83 (542)
T PRK05858 4 TGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGM 83 (542)
T ss_pred cCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHH
Confidence 67999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++|+.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++++.+++|++.|+++|+|||||+||.
T Consensus 84 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 84 SAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
|++.++++..... .+. ......+.++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++|
T Consensus 164 dv~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt 237 (542)
T PRK05858 164 DHAFSMADDDGRP-GAL-----TELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMN 237 (542)
T ss_pred hhhhccccccccc-ccc-----ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEc
Confidence 9998887642111 000 0011223467789999999999999999999999998899999999999999999999
Q ss_pred CCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHHH
Q 011590 253 PMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKK 331 (482)
Q Consensus 253 ~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~~ 331 (482)
+.+||+||++||+|+|...++++++||+||++|+++++...+++ |.+++++||||.|+..++..+ +++.+.+|++.
T Consensus 238 ~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~ 314 (542)
T PRK05858 238 GMGRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV---FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSA 314 (542)
T ss_pred CCcCCCCCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc---cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHH
Confidence 99999999999999999889999999999999999876544332 455689999999999997655 48999999999
Q ss_pred HHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeCch-hHH
Q 011590 332 VLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA-NTM 410 (482)
Q Consensus 332 ~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~-~~~ 410 (482)
++++|.+.++.. .....|.+.+.+.++++.............++++.++++.|++.+ |++.+++.|++ +..
T Consensus 315 ~l~~L~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ivv~d~g~~~~ 386 (542)
T PRK05858 315 ILSALAGAGGDR----TDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLL----DRDAIVIGDGGDFVS 386 (542)
T ss_pred HHHHHHHhcccc----cCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhc----CCCeEEEECCcHHHH
Confidence 999999887642 123457766555444432221111122335688889999999988 99999999954 455
Q ss_pred HHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|..+ +|+...|++|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||+|++||++|+++|
T Consensus 387 ~~~~-~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~iv 457 (542)
T PRK05858 387 YAGR-YIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSV 457 (542)
T ss_pred HHHH-HccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEE
Confidence 5544 5688889999998889999999999999999999999999999999999999999999999999875
No 8
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2e-89 Score=731.35 Aligned_cols=459 Identities=25% Similarity=0.393 Sum_probs=387.4
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
.-..++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus 17 ~~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~ 96 (587)
T PRK06965 17 PAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGV 96 (587)
T ss_pred CchhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccH
Confidence 3457899999999999999999999999999999999975 579999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
+|+++||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||+.++++++++.+.+++|++.|+++|+|||||
T Consensus 97 ~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 176 (587)
T PRK06965 97 TNAVTGIATAYMDSIPMVVISGQVPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVV 176 (587)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+||.|++.++++.......+. +...+...++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+|
T Consensus 177 ~iP~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~p 251 (587)
T PRK06965 177 DIPKDVSKTPCEYEYPKSVEM-----RSYNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYP 251 (587)
T ss_pred EeChhhhhChhccccCccccc-----cCCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCC
Confidence 999999988764211000000 000111234678899999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCC-CCCcEEEEeCCchhhcccC
Q 011590 249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVDVCKEEIELRK 320 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-~~~~ii~id~d~~~~~~~~ 320 (482)
|++|++|||+||++||+|+|. ..++++++||+||+||++++++.+ +++..|. +++++||||.|+..+++.+
T Consensus 252 v~tt~~gkg~~~~~hpl~~G~~G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~~~~ 330 (587)
T PRK06965 252 VTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRVI-GNPAHFASRPRKIIHIDIDPSSISKRV 330 (587)
T ss_pred EEEccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCccccc-CChhhcCCCCceEEEEeCCHHHhCCcC
Confidence 999999999999999999985 345789999999999999987654 3222343 3579999999999987654
Q ss_pred -CceeEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590 321 -PHLGLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397 (482)
Q Consensus 321 -~~~~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 397 (482)
.++.+++|++.+|++|++.++...... .....|.+.+.+++++... .......++++..+++.|++.+ |
T Consensus 331 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l----~ 402 (587)
T PRK06965 331 KVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDCL----KYDRESEIIKPQYVVEKLWELT----D 402 (587)
T ss_pred CCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh----hccccCCCcCHHHHHHHHHhhC----C
Confidence 499999999999999998875421110 1123465544333322110 1111234688888999999888 9
Q ss_pred CCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590 398 PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 477 (482)
Q Consensus 398 ~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l 477 (482)
+++|++.|++++..+...+++...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++||++
T Consensus 403 ~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~eL~Ta~r~~l 482 (587)
T PRK06965 403 GDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCIQELSTCLQYDT 482 (587)
T ss_pred CCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCC
Confidence 99999999655443444566888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 011590 478 MISSI 482 (482)
Q Consensus 478 ~i~~~ 482 (482)
|+++|
T Consensus 483 pviiv 487 (587)
T PRK06965 483 PVKII 487 (587)
T ss_pred CeEEE
Confidence 99875
No 9
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.6e-89 Score=727.63 Aligned_cols=451 Identities=27% Similarity=0.422 Sum_probs=388.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
++++++++|++.|+++||+||||+||+++++|++++.+ ++|++|.+|||++|++||+||+|+||||+||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 56799999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++|+.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++++.+++|++.|+++|+|||||+|
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 167 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDL 167 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++.......+. ....+...+++..+++++++|.+|+||+|++|.|++++++.+++++|||++|+||+
T Consensus 168 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~ 242 (566)
T PRK07282 168 PKDVSALETDFIYDPEVNL-----PSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVV 242 (566)
T ss_pred Chhhhhhhhcccccccccc-----cCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence 9999988865211000000 00112223567789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 251 PTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
+|+++||+||++||+|+|. ..++++++||+||+||++++++.++ .+..|.++.++||||.|+.++++.+ ++
T Consensus 243 tt~~gkg~ip~~hpl~~G~~G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~-~~~~~~~~~~~i~id~d~~~i~~~~~~~ 321 (566)
T PRK07282 243 TTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTG-NPKTFAKNAKVAHIDIDPAEIGKIIKTD 321 (566)
T ss_pred eccccCCCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-ChhhcCCCCeEEEEECCHHHhCCCCCCC
Confidence 9999999999999999984 3457899999999999999877543 3334666789999999999997655 49
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEE
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPIL 402 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~ 402 (482)
+.+++|+..+|++|.+.++.. .....|.+.+.+.+.++.. ......++++.++++.|++.+ ++++++
T Consensus 322 ~~i~~D~~~~L~~L~~~l~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~l~~~~----~~~~iv 388 (566)
T PRK07282 322 IPVVGDAKKALQMLLAEPTVH----NNTEKWIEKVTKDKNRVRS-----YDKKERVVQPQAVIERIGELT----NGDAIV 388 (566)
T ss_pred eEEecCHHHHHHHHHHhhccc----CChHHHHHHHHHHHHhchh-----ccCcCCCcCHHHHHHHHHhhc----CCCeEE
Confidence 999999999999999887532 1234576555433332210 111234688889999999888 889999
Q ss_pred EeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590 403 VSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 403 v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~ 481 (482)
+.|+++ ..|. ..+|+...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++
T Consensus 389 v~d~G~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~ 467 (566)
T PRK07282 389 VTDVGQHQMWA-AQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKV 467 (566)
T ss_pred EECCcHHHHHH-HHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence 999554 4454 44678888999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 011590 482 I 482 (482)
Q Consensus 482 ~ 482 (482)
|
T Consensus 468 v 468 (566)
T PRK07282 468 V 468 (566)
T ss_pred E
Confidence 5
No 10
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.3e-89 Score=728.67 Aligned_cols=462 Identities=26% Similarity=0.370 Sum_probs=388.3
Q ss_pred cCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590 8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (482)
Q Consensus 8 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp 86 (482)
.|+...++++|+|++.|+++||+||||+||+++++|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+||
T Consensus 5 ~~~~~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GP 84 (595)
T PRK09107 5 SHMPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGP 84 (595)
T ss_pred hhhhhhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 355577899999999999999999999999999999999965 5899999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC 166 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv 166 (482)
|++|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++.+.+++|++.|+++|+|||
T Consensus 85 G~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 164 (595)
T PRK09107 85 GATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPV 164 (595)
T ss_pred cHhHHHHHHHHHhhcCCCEEEEEcCCChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccc--cHHHHHHHHHH
Q 011590 167 YLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR--AEGELKKLVES 244 (482)
Q Consensus 167 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~--~~~~l~~lae~ 244 (482)
||+||.|++.++++.......+. ... ..+.+.++++.+++++++|.+|+||+|++|.|+.+++ +.+++++|||+
T Consensus 165 ~l~iP~Dv~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~ 240 (595)
T PRK09107 165 VVDIPKDVQFATGTYTPPQKAPV---HVS-YQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVEL 240 (595)
T ss_pred EEecCCChhhccccccccccccc---ccC-CCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHH
Confidence 99999999877654211000000 000 1122345678899999999999999999999998875 88999999999
Q ss_pred hCCcEeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhc
Q 011590 245 TGIPFLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 245 ~g~pv~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~ 317 (482)
+|+||++|+++||+||++||+|+|.. .++++++||+||+||++++++.+. ++..|.++.++||||.|+..++
T Consensus 241 lg~pv~tt~~gkg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~-~~~~~~~~~~~I~id~d~~~i~ 319 (595)
T PRK09107 241 TGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRITG-RLDAFSPNSKKIHIDIDPSSIN 319 (595)
T ss_pred HCCCEEECccccccCCCCCCcccCCCCCCccHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999853 457889999999999999876543 3334566788999999999997
Q ss_pred ccC-CceeEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhc
Q 011590 318 LRK-PHLGLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILG 394 (482)
Q Consensus 318 ~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 394 (482)
+.+ .++.+++|++.+|++|.+.+++..... .....|.+.+.+++..... .......++++..+++.|++++
T Consensus 320 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~l-- 393 (595)
T PRK09107 320 KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSL----AYTPSDDVIMPQYAIQRLYELT-- 393 (595)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh----hccCCCCCcCHHHHHHHHHHhC--
Confidence 654 499999999999999999876431110 1123465444333222110 1111234688888999999888
Q ss_pred cCC-CCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHH
Q 011590 395 VGS-PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWL 473 (482)
Q Consensus 395 ~~~-~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~ 473 (482)
+ +|.+++.|+++...+...+|+..+|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++
T Consensus 394 --~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~ 471 (595)
T PRK09107 394 --KGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAV 471 (595)
T ss_pred --CCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHH
Confidence 6 4778888855544444556788899999999999999999999999999999999999999999999999999999
Q ss_pred HcCcccccC
Q 011590 474 SCIIMISSI 482 (482)
Q Consensus 474 r~~l~i~~~ 482 (482)
||++|+++|
T Consensus 472 r~~lpvi~v 480 (595)
T PRK09107 472 QYNLPVKIF 480 (595)
T ss_pred HhCCCeEEE
Confidence 999999875
No 11
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.1e-89 Score=727.60 Aligned_cols=457 Identities=24% Similarity=0.376 Sum_probs=386.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
.++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|++||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~ 82 (574)
T PRK07979 3 MLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhh
Confidence 4789999999999999999999999999999999976 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++|+.+++|||+|+|+.+....+++.+|++|+..+++++|||+.++++++++.+.+++||+.|.++|+|||||+||
T Consensus 83 l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 83 ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++... ..+. ........+...++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+||+|
T Consensus 163 ~Dv~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~t 239 (574)
T PRK07979 163 KDILNPANKLPY--VWPE-SVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVS 239 (574)
T ss_pred hhhhhhhhcccc--ccCc-ccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence 999876544210 0000 0000000112234678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|+++||+||++||+|+|.. .++++++||+||+||++++++.+.++ ..|.+++++||||.|+.++++.+ +++
T Consensus 240 t~~gkg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~i~~~~~~~~ 318 (574)
T PRK07979 240 SLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNL-AKYCPNATVLHIDIDPTSISKTVTADI 318 (574)
T ss_pred ccccCCCCCCCCcccccCCcCCCCHHHHHHHHhCCEEEEeCCCCcccccCCh-hhcCCCCeEEEEECCHHHhCCcccCCe
Confidence 9999999999999999853 56789999999999999988765333 34566789999999999997654 599
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 401 (482)
.+++|++.+|++|++.+.+..... .....|.+.+.+++.+... .......++++.++++.|++.+ ++++|
T Consensus 319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l----~~d~i 390 (574)
T PRK07979 319 PIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQCL----KYDTHSEKIKPQAVIETLWRLT----KGDAY 390 (574)
T ss_pred EEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChh----hccCCCCCcCHHHHHHHHHhhc----CCCEE
Confidence 999999999999998876421110 1123465544333222110 1111234688888999999888 88999
Q ss_pred EEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590 402 LVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 480 (482)
Q Consensus 402 ~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~ 480 (482)
++.|+++ ..|.. .+|+...|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||||++||+||++
T Consensus 391 vv~d~G~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~ 469 (574)
T PRK07979 391 VTSDVGQHQMFAA-LYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVL 469 (574)
T ss_pred EEeCCcHHHHHHH-HhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeE
Confidence 9999554 55554 456888899999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011590 481 SI 482 (482)
Q Consensus 481 ~~ 482 (482)
+|
T Consensus 470 iv 471 (574)
T PRK07979 470 VL 471 (574)
T ss_pred EE
Confidence 75
No 12
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=1e-88 Score=725.98 Aligned_cols=454 Identities=25% Similarity=0.356 Sum_probs=384.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
+|+++++|++.|+++||++|||+||+.+++|++++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~ 80 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCV 80 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHH
Confidence 47999999999999999999999999999999999878899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++++.+++|++.|.++| |||||+||.
T Consensus 81 ~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~-GPV~l~iP~ 159 (579)
T TIGR03457 81 TAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREM-GPAQLNIPR 159 (579)
T ss_pred HHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
|++.++++.... .+. ......+++..+++++++|.+||||+|++|+|++++++.++|.+|||++|+||+||
T Consensus 160 Dv~~~~~~~~~~--~~~-------~~~~~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt 230 (579)
T TIGR03457 160 DYFYGEIDVEIP--RPV-------RLDRGAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNS 230 (579)
T ss_pred chhhhhcccccC--ccc-------ccCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEc
Confidence 999888763211 010 11223456778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccC--CCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 253 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g--~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
+.+||+||++||+++|. ..++++++||+||+||++++++.++. ....|.+++++||||.|+..+++.+ ++
T Consensus 231 ~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~ 310 (579)
T TIGR03457 231 YLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVT 310 (579)
T ss_pred ccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCC
Confidence 99999999999999995 24578999999999999998654321 1123566789999999999997655 59
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHh---------------hhcCCCCCCcccHHHH
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQ---------------LAKDVVPFNFMTPMRI 387 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 387 (482)
+.+++|++.+|++|.+.+.....+. ....|.+.+.+.+..|...+... ...+..++++.++++.
T Consensus 311 ~~i~~D~~~~l~~L~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 389 (579)
T TIGR03457 311 VGICGDAKAAAAEILQRLAGKAGDA-NRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRE 389 (579)
T ss_pred eeEecCHHHHHHHHHHhhhhccccc-chhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHH
Confidence 9999999999999999885421100 11123222221111221111100 0112346888889999
Q ss_pred HHHHHhccCCCCcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCCh
Q 011590 388 IRDAILGVGSPAPILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSA 466 (482)
Q Consensus 388 l~~~l~~~~~~~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~ 466 (482)
|++.+ ++++|++.|+++ ..|. ..+|+...|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++
T Consensus 390 l~~~l----~~~~iv~~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~ 464 (579)
T TIGR03457 390 LEKAM----PEDAIVSTDIGNINSVA-NSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM 464 (579)
T ss_pred HHHhC----CCCeEEEECCchhHHHH-HHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH
Confidence 99888 999999999554 4554 45668889999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccccC
Q 011590 467 VEVEVWLSCIIMISSI 482 (482)
Q Consensus 467 ~eL~T~~r~~l~i~~~ 482 (482)
|||||++||++|+++|
T Consensus 465 ~eL~Tavr~~lpvi~v 480 (579)
T TIGR03457 465 NEIMTAVRHDIPVTAV 480 (579)
T ss_pred HHHHHHHHhCCCeEEE
Confidence 9999999999999765
No 13
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=9e-89 Score=722.76 Aligned_cols=451 Identities=24% Similarity=0.391 Sum_probs=389.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
..++++|+|++.|+++||+||||+||+.+++|++++.+++|++|.++||++|++||+||+|+||||+||++|+|||++|+
T Consensus 13 ~~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~ 92 (570)
T PRK06725 13 EEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNL 92 (570)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 46899999999999999999999999999999999987889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++||.+++|||+|+|++++...+++.+|++||..+++++|||++++.+++++.+.+++|++.|+++|+|||||+||
T Consensus 93 ~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 93 VTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred HHHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++.......+. ....+.+.++++.+++++++|.+||||+|++|.|+.++++.++|.+|||++|+||+|
T Consensus 173 ~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~t 247 (570)
T PRK06725 173 KDVQNEKVTSFYNEVVEI-----PGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVS 247 (570)
T ss_pred cchhhcccccccCccccc-----ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEE
Confidence 999987765211000000 000122346778899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|+++||+||++||+++|.. .++++++||+||+||++++++.+.+ ...|.+++++||||.|+..++..+ .++
T Consensus 248 t~~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~-~~~~~~~~~~i~id~d~~~i~~~~~~~~ 326 (570)
T PRK06725 248 TLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVTGK-LELFSPHSKKVHIDIDPSEFHKNVAVEY 326 (570)
T ss_pred CCccCcCCCCCChhhcCCCCCCCCHHHHHHHHhCCEEEEeCCCCCccccCc-ccccCCCCeEEEEeCCHHHhCCCCCCCe
Confidence 9999999999999999853 4578999999999999998876533 333566778999999999997654 499
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
.+++|+..+|++|.+.++.. ....|.+.+.++++++.... .....++++..+++.|++.+ |++.|++
T Consensus 327 ~i~gD~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~l----~~d~iiv 393 (570)
T PRK06725 327 PVVGDVKKALHMLLHMSIHT-----QTDEWLQKVKTWKEEYPLSY----KQKESELKPQHVINLVSELT----NGEAIVT 393 (570)
T ss_pred EEecCHHHHHHHHHHhcccc-----CcHHHHHHHHHHHHhChhhh----cccCCCcCHHHHHHHHHhhC----CCCcEEE
Confidence 99999999999998877532 23457665544443322111 11234688888999999888 9999999
Q ss_pred eCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|+.|||+|++||++|+++|
T Consensus 394 ~d~g~~~~~~-~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~v 472 (570)
T PRK06725 394 TEVGQHQMWA-AHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVF 472 (570)
T ss_pred eCCcHHHHHH-HHhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEE
Confidence 99654 4544 445688889999999999999999999999999999999999999999999999999999999999865
No 14
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=1.4e-88 Score=726.11 Aligned_cols=453 Identities=28% Similarity=0.393 Sum_probs=387.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH 90 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N 90 (482)
.++++++|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+|||+||+|+| |||+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 4799999999999999999999999999999999975 4799999999999999999999999 9999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++|+++||.+++|||+|+|++++...+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 162 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDL 162 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++.......+ .+...+.++++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+||+
T Consensus 163 P~Dv~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~ 235 (591)
T PRK11269 163 PFDVQVAEIEFDPDTYEP-------LPVYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVI 235 (591)
T ss_pred Chhhhhcccccccccccc-------cccCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeE
Confidence 999998776532100000 0112334577889999999999999999999999989999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590 251 PTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P 321 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~ 321 (482)
+|+.+||+||++||+++|.. .++++++||+||+||++++++.+.+ +..|.++.++||||.|+..+++.+ +
T Consensus 236 tt~~gkg~~p~~hpl~~G~~g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~i~Vd~d~~~~~~~~~~ 314 (591)
T PRK11269 236 PTLMGWGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNRWANRHTGS-VEVYTKGRKFVHVDIEPTQIGRVFGP 314 (591)
T ss_pred ecccccCcCCCCChhhccCCcCCCCcHHHHHHHHhCCEEEEeCCCCCccccCc-hhhcCCCCeEEEeeCCHHHhCCCCCC
Confidence 99999999999999999842 3467899999999999998866533 333566789999999999987654 5
Q ss_pred ceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCC
Q 011590 322 HLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399 (482)
Q Consensus 322 ~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 399 (482)
++.+++|+..+|++|.+.+++.... ......|.+.+.+.++++... ....+.++++..+++.|++.+ |++
T Consensus 315 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~l----~~d 386 (591)
T PRK11269 315 DLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRTLLRK----THFDNVPIKPQRVYEEMNKAF----GRD 386 (591)
T ss_pred CeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhchhh----ccCCCCCcCHHHHHHHHHHhc----CCC
Confidence 9999999999999999887542100 012345766554443332111 111234688889999999988 999
Q ss_pred cEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcc
Q 011590 400 PILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIM 478 (482)
Q Consensus 400 ~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~ 478 (482)
++++.|++ +..|+ ..+++...|+.|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|
T Consensus 387 ~ivv~d~g~~~~~~-~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lp 465 (591)
T PRK11269 387 TCYVSTIGLSQIAA-AQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLP 465 (591)
T ss_pred cEEEECCcHHHHHH-HHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCC
Confidence 99999954 45555 44567778899999888999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 011590 479 ISSI 482 (482)
Q Consensus 479 i~~~ 482 (482)
+++|
T Consensus 466 v~~v 469 (591)
T PRK11269 466 YIHV 469 (591)
T ss_pred eEEE
Confidence 9875
No 15
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=2e-88 Score=721.15 Aligned_cols=450 Identities=26% Similarity=0.401 Sum_probs=385.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
.+++++|+|++.|+++||++|||+||+++++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 6 ~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~ 85 (561)
T PRK06048 6 EKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNL 85 (561)
T ss_pred ccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHH
Confidence 45899999999999999999999999999999999987889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++||.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++.+.+++|++.|.++|+|||||+||
T Consensus 86 ~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 86 VTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++.......+. ....+...++++.+++++++|.+||||+|++|.|++++++.+++++|||++|+||+|
T Consensus 166 ~dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~t 240 (561)
T PRK06048 166 KDVTTAEIDFDYPDKVEL-----RGYKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTT 240 (561)
T ss_pred hhhhhcccccccCccccc-----ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEE
Confidence 999987765211000000 001122235677899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|+++||+||++||+++|.. .++++++||+||+||+++++..+. +...+.++.++||||.|+.+++..+ +++
T Consensus 241 t~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~I~id~d~~~~~~~~~~~~ 319 (561)
T PRK06048 241 TLMGIGAIPTEHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVTG-KLASFAPNAKIIHIDIDPAEISKNVKVDV 319 (561)
T ss_pred ccccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCccccC-ChhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 9999999999999999853 467899999999999999876543 3334566789999999999987554 599
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
.+++|+..+|++|++.+... ....|.+.+.+++++... .......++++..+++.|++.+ | +.+++
T Consensus 320 ~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~~----p-~~iiv 385 (561)
T PRK06048 320 PIVGDAKQVLKSLIKYVQYC-----DRKEWLDKINQWKKEYPL----KYKEREDVIKPQYVIEQIYELC----P-DAIIV 385 (561)
T ss_pred EEEeCHHHHHHHHHHhcccc-----CcHHHHHHHHHHHHhChh----hccCCCCCcCHHHHHHHHHhhC----C-CcEEE
Confidence 99999999999999987532 234576655443332111 1111234688888888888877 7 68888
Q ss_pred eCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.|++ +..|.. .+++...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++|||+|+++|
T Consensus 386 ~d~g~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~v 464 (561)
T PRK06048 386 TEVGQHQMWAA-QYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVA 464 (561)
T ss_pred EcCcHHHHHHH-HhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEE
Confidence 8854 455554 45688888999999999999999999999999999999999999999999999999999999999875
No 16
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.8e-88 Score=722.46 Aligned_cols=459 Identities=25% Similarity=0.412 Sum_probs=395.6
Q ss_pred CCCcccccCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEE
Q 011590 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79 (482)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v 79 (482)
|++++++..++ +++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||||+|
T Consensus 1 ~~~~~~~~~~~-~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv 79 (564)
T PRK08155 1 MASSGTTSTRK-RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV 79 (564)
T ss_pred CCCCCCCccCC-cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE
Confidence 77787776544 5799999999999999999999999999999999975 489999999999999999999999999999
Q ss_pred EEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV 159 (482)
Q Consensus 80 ~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~ 159 (482)
|++|+|||++|+++||++|+.+++|||+|+|+++....+++.+|++||.++|+++|||++++++++++++.+++|++.|.
T Consensus 80 ~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~ 159 (564)
T PRK08155 80 CMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQ 159 (564)
T ss_pred EEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHH
Q 011590 160 SGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239 (482)
Q Consensus 160 ~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~ 239 (482)
++|+|||||+||.|++.++++....+ .+. . ......++++.+++++++|.+||||+|++|.|++++++.+++.
T Consensus 160 ~~~~GPV~i~iP~Dv~~~~~~~~~~~-~~~-----~-~~~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~ 232 (564)
T PRK08155 160 SGRPGPVWIDIPKDVQTAVIELEALP-APA-----E-KDAAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARAR 232 (564)
T ss_pred cCCCCcEEEEcCHhHHhhhcccccCC-Ccc-----c-cCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHH
Confidence 99999999999999998886532111 000 0 1123345677899999999999999999999999889999999
Q ss_pred HHHHHhCCcEeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 240 KLVESTGIPFLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 240 ~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
+|||++|+||++|+++||+||++||+|+|.. .++++++||+||++|+++++..+.+ ...|.++.++||||.|
T Consensus 233 ~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~I~id~d 311 (564)
T PRK08155 233 ELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGK-TEQFCPNAKIIHVDID 311 (564)
T ss_pred HHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCCccccCC-HhhcCCCCeEEEEECC
Confidence 9999999999999999999999999999853 4578999999999999998765533 3335667899999999
Q ss_pred chhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 011590 313 KEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDA 391 (482)
Q Consensus 313 ~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (482)
+..+++.+ +++.+.+|+..+|++|++.++.. ....|.+.+...++++... ......++++..+++.|++.
T Consensus 312 ~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~v~~~l~~~ 382 (564)
T PRK08155 312 RAELGKIKQPHVAIQADVDDVLAQLLPLVEAQ-----PRAEWHQLVADLQREFPCP----IPKADDPLSHYGLINAVAAC 382 (564)
T ss_pred HHHhCCCcCCCeEEecCHHHHHHHHHHhhccc-----chHHHHHHHHHHHHhChhh----cccCCCCcCHHHHHHHHHHh
Confidence 99997655 49999999999999999877542 2345776655444432211 11123468888899999988
Q ss_pred HhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHH
Q 011590 392 ILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470 (482)
Q Consensus 392 l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~ 470 (482)
+ |++.+++.|++ +..|..+ +++...|++|+.++++|+|||++|+|+|+++|.|+++||+++|||||+|++|||+
T Consensus 383 l----~~~~iv~~D~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ 457 (564)
T PRK08155 383 V----DDNAIITTDVGQHQMWTAQ-AYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMA 457 (564)
T ss_pred C----CCCeEEEECCchHHHHHHH-hccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHH
Confidence 8 99999999955 4555544 5688888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcccccC
Q 011590 471 VWLSCIIMISSI 482 (482)
Q Consensus 471 T~~r~~l~i~~~ 482 (482)
|++||++|+++|
T Consensus 458 ta~~~~lpvi~v 469 (564)
T PRK08155 458 TAAENQLDVKII 469 (564)
T ss_pred HHHHhCCCeEEE
Confidence 999999999764
No 17
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.9e-88 Score=721.79 Aligned_cols=460 Identities=23% Similarity=0.336 Sum_probs=384.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
.++++|+|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~ 82 (574)
T PRK06466 3 LLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNA 82 (574)
T ss_pred cccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 4689999999999999999999999999999999964 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++|+.+++|||+|+|+.++...+++.+|++||..+|+++|||++++.+++++.+.+++|++.|+++|||||||+||
T Consensus 83 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 83 ITGIATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred HHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.+..+... ..+...+ .....+...++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+||++
T Consensus 163 ~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~t 239 (574)
T PRK06466 163 KDMTNPAEKFEY--EYPKKVK-LRSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTN 239 (574)
T ss_pred HhHhhhhhcccc--ccCcccc-cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEE
Confidence 999765432110 0000000 0000111234567899999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|+++||+||++||+|+|.. .++++++||+||++|++++++.+. ++..|.++.++||||.|+..++..+ +++
T Consensus 240 t~~~kg~~~~~hp~~~G~~G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~-~~~~~~~~~~vi~id~d~~~i~~~~~~~~ 318 (574)
T PRK06466 240 TLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARFDDRVTN-GPAKFCPNAKIIHIDIDPASISKTIKADI 318 (574)
T ss_pred cCccCCCCCCCChhhcCCCccccCHHHHHHHHhCCEEEEECCCCCccccC-chhhcCCCCeEEEEECCHHHhCCccCCCe
Confidence 9999999999999999843 457889999999999999876543 3334566789999999999997654 599
Q ss_pred eEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 401 (482)
.+.+|+..+|++|.+.++..... ......|.+.+.+++.+.... . ....+..++++.++++.|++.+ |++.|
T Consensus 319 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~l~~~l----~~~~i 392 (574)
T PRK06466 319 PIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLF-P-YDKGDGGIIKPQQVVETLYEVT----NGDAY 392 (574)
T ss_pred EEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcch-h-cccCCCCCcCHHHHHHHHHhhC----CCCeE
Confidence 99999999999999887542100 011234655544333221100 0 0011234688888999999888 88999
Q ss_pred EEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590 402 LVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 402 ~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~ 481 (482)
++.|+++...+...+|+...|+.|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++|||+|+++
T Consensus 393 v~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~lpv~i 472 (574)
T PRK06466 393 VTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGLPVKI 472 (574)
T ss_pred EEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence 99995554334455678888999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 011590 482 I 482 (482)
Q Consensus 482 ~ 482 (482)
|
T Consensus 473 v 473 (574)
T PRK06466 473 I 473 (574)
T ss_pred E
Confidence 5
No 18
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=4.4e-88 Score=724.89 Aligned_cols=457 Identities=26% Similarity=0.406 Sum_probs=388.8
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.+.+++++++|++.|+++||+||||+||+.+.+++++|.+ .+|++|.+|||++|++||+||+|+||||+||++|+|
T Consensus 15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G 94 (616)
T PRK07418 15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG 94 (616)
T ss_pred CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 4457899999999999999999999999999999999964 369999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG 165 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gP 165 (482)
||++|+++||++|+.|++|||+|+|+.++...+++.+|++|+..+|+++|||++++++++++++.+++||+.|+++|+||
T Consensus 95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GP 174 (616)
T PRK07418 95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGP 174 (616)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh
Q 011590 166 CYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (482)
Q Consensus 166 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~ 245 (482)
|||+||.|++.++++........... ......+.++++.+++++++|++||||+|++|.|++++++.++|++|||++
T Consensus 175 v~l~iP~Dv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l 251 (616)
T PRK07418 175 VLIDIPKDVGQEEFDYVPVEPGSVKP---PGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAERF 251 (616)
T ss_pred EEEecchhhhhchhcccccCcccccc---CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHHHH
Confidence 99999999998876521100000000 001112346778999999999999999999999999889999999999999
Q ss_pred CCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590 246 GIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL 318 (482)
Q Consensus 246 g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~ 318 (482)
|+||++|+++||+||++||+|+|. ..++++++||+||+||+++++..+. ....|.++.++||||.|+.++++
T Consensus 252 ~~pV~tt~~gkg~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~ig~ 330 (616)
T PRK07418 252 QIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGARFDDRVTG-KLDEFASRAKVIHIDIDPAEVGK 330 (616)
T ss_pred CCCEEEccCCCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEEcCCCCccccC-ChhhcCCCCeEEEEeCCHHHhCC
Confidence 999999999999999999999984 3567899999999999999876543 33346677899999999999976
Q ss_pred cC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590 319 RK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397 (482)
Q Consensus 319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 397 (482)
.+ +++.+.+|++.+|++|++.++..... .....|.+.+.++++++.. .......++++..+++.|++.+ +
T Consensus 331 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~v~~~l~~~~----~ 401 (616)
T PRK07418 331 NRRPDVPIVGDVRKVLVKLLERSLEPTTP-PRTQAWLERINRWKQDYPL----VVPPYEGEIYPQEVLLAVRDLA----P 401 (616)
T ss_pred ccCCCeEEecCHHHHHHHHHHhhhccccc-cchHHHHHHHHHHHHhCcc----cccCCCCCcCHHHHHHHHHhhC----C
Confidence 54 59999999999999999988543111 1234576665544433211 1112235788888999998877 7
Q ss_pred CCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 398 PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 398 ~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
+.+++.| |.+..|..++ ++ ..|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||++||+
T Consensus 402 -d~i~~~D~G~~~~~~~~~-~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~ 478 (616)
T PRK07418 402 -DAYYTTDVGQHQMWAAQF-LR-NGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYG 478 (616)
T ss_pred -CcEEEECChHHHHHHHHh-hh-cCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhC
Confidence 5888877 5566777665 45 568899999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
+||++|
T Consensus 479 lpvi~v 484 (616)
T PRK07418 479 INVKTV 484 (616)
T ss_pred CCeEEE
Confidence 999875
No 19
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=7.7e-88 Score=715.75 Aligned_cols=442 Identities=24% Similarity=0.422 Sum_probs=385.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
|+++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~ 80 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLIT 80 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 58999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
|+++|+.+++|||+|+|+++....+++.+|++||..+++++|||+.++++++++++.+++|++.|.++|+|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 81 GLADALLDSVPVVAITGQVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred HHHHHhhcCCCEEEEecCCCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
++.++++.+. . .+. ......++++.+++++++|.+||||+|++|.|+..+++.+++++|||++|+||++|+
T Consensus 161 v~~~~~~~~~-~-~~~-------~~~~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 231 (548)
T PRK08978 161 IQLAEGELEP-H-LTT-------VENEPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATL 231 (548)
T ss_pred hhhccccccc-c-ccc-------cCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcc
Confidence 9988765311 1 000 112334567889999999999999999999999888999999999999999999999
Q ss_pred CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590 254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL 325 (482)
Q Consensus 254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i 325 (482)
++||+||++||+|+|.. .++++++||+||++|+++++..+ ++...|.++.++||||.|+..+++.+ .++.+
T Consensus 232 ~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 310 (548)
T PRK08978 232 KGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDDRVT-GKLNTFAPHAKVIHLDIDPAEINKLRQAHVAL 310 (548)
T ss_pred ccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCCcccc-CCccccCCCCeEEEEECCHHHhCCCCCCCeEE
Confidence 99999999999999853 45788999999999999987543 33444667789999999999997654 59999
Q ss_pred eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590 326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405 (482)
Q Consensus 326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e 405 (482)
.+|++.+|++|.+.+. ...|.+.+.+.++++... ......++++..+++.|++.+ +++++++.|
T Consensus 311 ~~d~~~~l~~l~~~~~--------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~----~~~~iiv~d 374 (548)
T PRK08978 311 QGDLNALLPALQQPLN--------IDAWRQHCAQLRAEHAWR----YDHPGEAIYAPALLKQLSDRK----PADTVVTTD 374 (548)
T ss_pred ecCHHHHHHHHHHhcc--------chHHHHHHHHHHHhCchh----ccCCCCCcCHHHHHHHHHHhC----CCCcEEEec
Confidence 9999999999987652 134776665544432211 111234678888899999888 999999999
Q ss_pred ch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 GA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 g~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
++ +..|.. .+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++|+++|
T Consensus 375 ~g~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~iv 451 (548)
T PRK08978 375 VGQHQMWVA-QHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIV 451 (548)
T ss_pred CcHHHHHHH-HhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 54 455554 45688889999999999999999999999999999999999999999999999999999999999875
No 20
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=1.5e-87 Score=717.75 Aligned_cols=455 Identities=25% Similarity=0.379 Sum_probs=385.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
.++++++|++.|+++||+||||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 5 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~ 84 (588)
T PRK07525 5 KMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFV 84 (588)
T ss_pred cccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHH
Confidence 47999999999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++|+.+++|||+|+|+++....+.+.+|++||..+|++++||+.++++++++++.+++|++.|+++ +|||||+||.
T Consensus 85 ~gi~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~-~GPV~i~iP~ 163 (588)
T PRK07525 85 TAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRE-SGPAQINIPR 163 (588)
T ss_pred HHHHHHhhcCCCEEEEeCCCCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcC-CCCEEEEcCh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 4999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
|++.++++... .. +. ....+.+++..+++++++|.+||||+|++|.|++++++.++|++|||++|+||+||
T Consensus 164 Dv~~~~~~~~~-~~-~~-------~~~~~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT 234 (588)
T PRK07525 164 DYFYGVIDVEI-PQ-PV-------RLERGAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACG 234 (588)
T ss_pred hHhhhhccccc-Cc-cc-------cCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEc
Confidence 99988876321 10 00 11233457788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccC--CCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 253 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g--~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
+++||+||++||+++|. ..++++++||+||+||++++++.++. ....|++++++||||.|+..++..+ .+
T Consensus 235 ~~gkg~~p~~hpl~~G~~g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~ 314 (588)
T PRK07525 235 YLHNDAFPGSHPLWVGPLGYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVS 314 (588)
T ss_pred ccccccCCCCCccccccCcccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCC
Confidence 99999999999999984 34578999999999999998754421 1234667789999999999987655 48
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHh---h------------hcCCCCCCcccHHHH
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQ---L------------AKDVVPFNFMTPMRI 387 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~ 387 (482)
+.+++|++.+|++|.+.+.+.......+..|.+.+.+.+..|...+... . .....++++.++++.
T Consensus 315 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 394 (588)
T PRK07525 315 VGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALRE 394 (588)
T ss_pred ceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHH
Confidence 9999999999999999886421110112234333322222222111110 0 011246888899999
Q ss_pred HHHHHhccCCCCcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCCh
Q 011590 388 IRDAILGVGSPAPILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSA 466 (482)
Q Consensus 388 l~~~l~~~~~~~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~ 466 (482)
|++.+ |+++|++.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||++++.|+|+||+|+|||||+|++
T Consensus 395 l~~~l----~~d~ivv~d~G~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~~ 469 (588)
T PRK07525 395 IQKAL----PEDAIVSTDIGNNCSIA-NSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISM 469 (588)
T ss_pred HHHhC----CCCcEEEECCcccHHHH-HHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhccH
Confidence 99998 999999999554 5554 45668889999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccccC
Q 011590 467 VEVEVWLSCIIMISSI 482 (482)
Q Consensus 467 ~eL~T~~r~~l~i~~~ 482 (482)
|||||++||++|+++|
T Consensus 470 ~el~Ta~~~~lpv~iv 485 (588)
T PRK07525 470 NEVMTAVRHNWPVTAV 485 (588)
T ss_pred HHHHHHHHhCCCeEEE
Confidence 9999999999998765
No 21
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-87 Score=711.27 Aligned_cols=452 Identities=23% Similarity=0.358 Sum_probs=381.9
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh--CCcEEEEEcCChhh
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT--GKPGILLTVSGPGC 88 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t--gk~~v~~~t~GpG~ 88 (482)
...++++|+|++.|+++||++|||+|| .++++++.+.+|++|.+|||++|+|||+||+|+| |||+||++|+|||+
T Consensus 17 ~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~ 93 (565)
T PRK06154 17 AKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGA 93 (565)
T ss_pred cCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHhcCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccH
Confidence 346799999999999999999999995 4899999878899999999999999999999999 49999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
+|+++||++|+.+++|||+|+|+.+....+.+ +.+|+..+|+++|||+.++.+++++++.+++||+.|+++|+|||||
T Consensus 94 ~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~--~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l 171 (565)
T PRK06154 94 ENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA--PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVL 171 (565)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCcccccCC--CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999999999999999987765543 3578899999999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+||.|++.++++.......+. ......++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+|
T Consensus 172 ~iP~Dv~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~P 244 (565)
T PRK06154 172 ELPVDVLAEELDELPLDHRPS-------RRSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIP 244 (565)
T ss_pred ecchHHhhhhcccccccccCC-------CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCC
Confidence 999999988765311100110 1223356778899999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-
Q 011590 249 FLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK- 320 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~- 320 (482)
|+||+.+||+||++||+|+|. ..++++++||+||+||++++++. +++ .|+++.++||||.|+.++++.+
T Consensus 245 V~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~aDlvL~lG~~l~~~~-~~~--~~~~~~~vI~id~d~~~~~~~~~ 321 (565)
T PRK06154 245 VMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREADVLFGIGCSLTRSY-YGL--PMPEGKTIIHSTLDDADLNKDYP 321 (565)
T ss_pred EEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhCCEEEEECCCCcccc-cCc--cCCCCCeEEEEECCHHHhccccC
Confidence 999999999999999999984 34578999999999999998753 332 2666789999999999997655
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCCC-CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC-C
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFCL-GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS-P 398 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~ 398 (482)
+++.+.+|+..+|++|.+.++...... .....|.+.+.+.++++.............++++..+++.|++.+ + +
T Consensus 322 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~~ 397 (565)
T PRK06154 322 IDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAV----DIK 397 (565)
T ss_pred CCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhc----CCC
Confidence 499999999999999999887532111 113468776665555443222221122345789989999999888 7 4
Q ss_pred CcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590 399 APILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 477 (482)
Q Consensus 399 ~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l 477 (482)
|.|++.|++ +..|. ..+|+...|++|+.++++|+|||++|+|||+++|.|+|+||+++|||||+|++|||||++|||+
T Consensus 398 d~iv~~D~G~~~~~~-~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~l 476 (565)
T PRK06154 398 TVIITHDAGSPRDQL-SPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVRERI 476 (565)
T ss_pred CEEEEECCcccHHHH-HHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHHhCC
Confidence 788888854 45554 4456888899999988899999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 011590 478 MISSI 482 (482)
Q Consensus 478 ~i~~~ 482 (482)
||++|
T Consensus 477 pi~~v 481 (565)
T PRK06154 477 PILTI 481 (565)
T ss_pred CeEEE
Confidence 99875
No 22
>PLN02470 acetolactate synthase
Probab=100.00 E-value=1.2e-87 Score=718.06 Aligned_cols=460 Identities=23% Similarity=0.380 Sum_probs=385.7
Q ss_pred cCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590 8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (482)
Q Consensus 8 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp 86 (482)
.+....++++|+|++.|+++||+||||+||+++++|+++|.+ ++|++|.+|||++|+|||+||+|+|||++||++|+||
T Consensus 7 ~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GP 86 (585)
T PLN02470 7 FAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGP 86 (585)
T ss_pred CCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 344556799999999999999999999999999999999965 4799999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC 166 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv 166 (482)
|++|+++||++||.+++|||+|+|+.++...+++.+|++||..+++++|||++++++++++.+.+++|++.|.++|+|||
T Consensus 87 G~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 166 (585)
T PLN02470 87 GATNLVTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPV 166 (585)
T ss_pred cHHHHHHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590 167 YLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246 (482)
Q Consensus 167 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g 246 (482)
||+||.|++.+++........+. . .........++++.+++++++|.+|+||+|++|.|+. ++.++|++|||++|
T Consensus 167 ~l~iP~Dv~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~~ 241 (585)
T PLN02470 167 LVDIPKDIQQQLAVPNWNQPMKL-P--GYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELTG 241 (585)
T ss_pred EEEecCchhhhhccccccccccc-c--ccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHhC
Confidence 99999999987753210000000 0 0000112235678899999999999999999999986 56789999999999
Q ss_pred CcEeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590 247 IPFLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR 319 (482)
Q Consensus 247 ~pv~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~ 319 (482)
+||++|+++||+||++||+++|.. .++++++||+||+||+++++..+ ++...|.+..++||||.|+.++++.
T Consensus 242 ~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~-~~~~~~~~~~~~I~id~d~~~i~~~ 320 (585)
T PLN02470 242 IPVASTLMGLGAFPASDELSLQMLGMHGTVYANYAVDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKN 320 (585)
T ss_pred CCEEEccCccccCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCccccc-CChhhcCCCCeEEEEECCHHHhCCC
Confidence 999999999999999999999853 45789999999999999987654 3333355678899999999999765
Q ss_pred C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590 320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 398 (482)
+ +++.+++|+..+|++|.+.++...........|.+.+.+.++++... .+....++++..+++.|++++ |+
T Consensus 321 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~~----~~ 392 (585)
T PLN02470 321 KQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLS----YPTFGDAIPPQYAIQVLDELT----DG 392 (585)
T ss_pred cCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhChhc----ccCCCCCcCHHHHHHHHHhhC----CC
Confidence 5 49999999999999999987643110011245765554443332111 111224688888999999888 88
Q ss_pred CcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590 399 APILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 477 (482)
Q Consensus 399 ~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l 477 (482)
++|++.|++ +..|..+ +|+...|++|+.++++|+|||++|+|||+++|+|+++||+|+|||||+|++|||||++||++
T Consensus 393 d~iv~~d~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l 471 (585)
T PLN02470 393 NAIISTGVGQHQMWAAQ-WYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENL 471 (585)
T ss_pred CEEEEECCcHHHHHHHH-hcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCC
Confidence 999999854 4555544 56888899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 011590 478 MISSI 482 (482)
Q Consensus 478 ~i~~~ 482 (482)
|+++|
T Consensus 472 ~v~iv 476 (585)
T PLN02470 472 PVKIM 476 (585)
T ss_pred CeEEE
Confidence 99765
No 23
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.4e-87 Score=714.90 Aligned_cols=453 Identities=27% Similarity=0.417 Sum_probs=386.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.++||++|++||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 4789999999999999999999999999999999975 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++|+.+++|||+|+|++++...+++.+|++||.++++++|||+.++++++++.+.+++|++.|+++|||||||+||
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++.......+. ....+...++++.+++++++|.+||||+|++|.|++++++.++|++|||++|+||++
T Consensus 162 ~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~t 236 (563)
T PRK08527 162 KDVTATLGEFEYPKEISL-----KTYKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVE 236 (563)
T ss_pred HhHhhhhhcccccccccc-----ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEE
Confidence 999877654210000000 000112234678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|+++||+||++||+|+|.. .++++++||+||+||++++++.+ +++..|.++.++||||.|+.+++... +++
T Consensus 237 t~~~kg~~~~~hpl~~G~~g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~ 315 (563)
T PRK08527 237 TLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDRVT-GKLSEFAKHAKIIHVDIDPSSISKIVNADY 315 (563)
T ss_pred ccccCCCCCCCChhhcCCCcccCCHHHHHHHHhCCEEEEeCCCCCcccc-CChhhcCCCCeEEEEECCHHHhCCCCCCCe
Confidence 9999999999999999853 56789999999999999988754 33334566789999999999987654 489
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
.+++|++.+|++|.+.++... ......|.+.+.++++.... .......++++.++++.|++.+ |+++|++
T Consensus 316 ~i~~D~~~~l~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~l~~~l----~~d~iv~ 385 (563)
T PRK08527 316 PIVGDLKNVLKEMLEELKEEN--PTTYKEWREILKRYNELHPL----SYEDSDEVLKPQWVIERVGELL----GDDAIIS 385 (563)
T ss_pred EEecCHHHHHHHHHHhhhhcc--ccchHHHHHHHHHHHHhCcc----cccCCCCCcCHHHHHHHHHhhC----CCCeEEE
Confidence 999999999999999886431 01224576655443332110 0111234688888999999988 9999999
Q ss_pred eCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.|++ +..|..+ +++...|++|+.++++|+|||++|+|||+++|.|+++|++|+|||||+|++|||||++|||+|+++|
T Consensus 386 ~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~v 464 (563)
T PRK08527 386 TDVGQHQMWVAQ-FYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINI 464 (563)
T ss_pred ECCcHHHHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEE
Confidence 9955 5555544 4577789999999999999999999999999999999999999999999999999999999999864
No 24
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.1e-87 Score=714.79 Aligned_cols=453 Identities=25% Similarity=0.418 Sum_probs=388.9
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+..++++|+|++.|+++||+||||+||+.+++|++++.++++++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 13 ~~~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N 92 (571)
T PRK07710 13 EKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATN 92 (571)
T ss_pred cccchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 34678999999999999999999999999999999998788999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++.+++++++.+++|++.|.++|||||||+|
T Consensus 93 ~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 172 (571)
T PRK07710 93 VVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDI 172 (571)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++.......+. ....+...+++..+++++++|.+|+||+|++|.|+.++++.+++.+|+|++|+||+
T Consensus 173 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~ 247 (571)
T PRK07710 173 PKDMVVEEGEFCYDVQMDL-----PGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVV 247 (571)
T ss_pred ChhHhhccccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEE
Confidence 9999987764211000000 00111223567789999999999999999999999888899999999999999999
Q ss_pred eCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 251 PTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
+|+.+||+||++||+++|.. .++++++||+||+||++++++.+ ++...|.++.++||||.|+..++... ++
T Consensus 248 tt~~~kg~i~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~ig~~~~~~ 326 (571)
T PRK07710 248 HTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRVT-GNLAYFAKEATVAHIDIDPAEIGKNVPTE 326 (571)
T ss_pred EcCccCccCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEeCCCCCcccc-CchhhcCCCCeEEEEECCHHHhcCcCCCC
Confidence 99999999999999999853 56789999999999999987654 44344667789999999999987655 48
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEE
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPIL 402 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~ 402 (482)
+.+++|++.+|++|.+.++.. .....|.+.+.+++++.... ......++++..+++.|++.+ |+++++
T Consensus 327 ~~i~~D~~~~l~~L~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l----~~~~iv 394 (571)
T PRK07710 327 IPIVADAKQALQVLLQQEGKK----ENHHEWLSLLKNWKEKYPLS----YKRNSESIKPQKAIEMLYEIT----KGEAIV 394 (571)
T ss_pred eEEecCHHHHHHHHHHhhhcc----CCcHHHHHHHHHHHHhChhh----hcCCCCCcCHHHHHHHHHhhC----CCCeEE
Confidence 999999999999999876532 12345766555444332111 111234688888899998888 999999
Q ss_pred EeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590 403 VSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 403 v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~ 481 (482)
+.|+++ ..|.. .+++...|++|+.++++|+|||++|+|||++++.|+++||+++|||||+|++|||||++||++|+++
T Consensus 395 ~~d~g~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~i 473 (571)
T PRK07710 395 TTDVGQHQMWAA-QYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKV 473 (571)
T ss_pred EECCcHHHHHHH-HhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEE
Confidence 999554 55554 4568888999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 011590 482 I 482 (482)
Q Consensus 482 ~ 482 (482)
|
T Consensus 474 v 474 (571)
T PRK07710 474 V 474 (571)
T ss_pred E
Confidence 5
No 25
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=1.5e-87 Score=714.16 Aligned_cols=447 Identities=28% Similarity=0.421 Sum_probs=382.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
|+++++|++.|+++||+||||+||+.+.+|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~ 80 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVT 80 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHH
Confidence 67999999999999999999999999999999998788999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
||++||.+++|||+|+|++++...+++.+|++||.++|+++|||++++++++++++.+++|++.|+++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 81 GVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
++.++++.... +. .....+.++++.+++++++|.+||||+|++|+|+.++++.+++.+|||++|+||++|+
T Consensus 161 v~~~~~~~~~~---~~------~~~~~~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 231 (547)
T PRK08322 161 IAAEETDGKPL---PR------SYSRRPYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQ 231 (547)
T ss_pred hhhCccccccc---cc------cCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcc
Confidence 98877653211 10 0112234567889999999999999999999999988999999999999999999999
Q ss_pred CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590 254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL 325 (482)
Q Consensus 254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i 325 (482)
++||.||++||+++|.. .++++++||+||+||+++.++.+..+. +.++.++||||.|+..++..+ +++.+
T Consensus 232 ~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i 309 (547)
T PRK08322 232 MGKGVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN--PNGDKKVIHINFLPAEVDPVYFPQVEV 309 (547)
T ss_pred ccCCcCCCCCchhccCCCCCCCHHHHHHHHhCCEEEEECCCCccccccccC--CCCCCeEEEEeCCHHHcCCCcCCCeEE
Confidence 99999999999999853 467899999999999999876544332 245678999999999886544 59999
Q ss_pred eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590 326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405 (482)
Q Consensus 326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e 405 (482)
++|++.+|++|.+.+++.. .....|.+..+ ++.....+........++++.++++.|++.+ +++++++.|
T Consensus 310 ~~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~ii~~d 379 (547)
T PRK08322 310 VGDIANSLWQLKERLADQP---HWDFPRFLKIR---EAIEAHLEEGADDDRFPMKPQRIVADLRKVM----PDDDIVILD 379 (547)
T ss_pred ecCHHHHHHHHHHhccccc---cccHHHHHHHH---HHHHHhhhhcccCCCCCcCHHHHHHHHHHHC----CCCeEEEEC
Confidence 9999999999998875421 11112332222 2111111111111233688888999999988 989999888
Q ss_pred -chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|.+..|+.++ ++...|++|+.+.++|+|||++|+|||+++|+|+++||+++|||||+|++|||||++||++|+++|
T Consensus 380 ~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ii 456 (547)
T PRK08322 380 NGAYKIWFARN-YRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVL 456 (547)
T ss_pred CcHHHHHHHHh-cccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEE
Confidence 5556666554 577889999999999999999999999999999999999999999999999999999999999875
No 26
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=1.5e-87 Score=720.30 Aligned_cols=457 Identities=25% Similarity=0.393 Sum_probs=388.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
.+++++|+|++.|+++||+||||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 29 ~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 108 (612)
T PRK07789 29 ERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATN 108 (612)
T ss_pred ccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 45799999999999999999999999999999999965 48999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++.+.+++|++.|+++|+|||||+|
T Consensus 109 ~l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~i 188 (612)
T PRK07789 109 LVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDI 188 (612)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++......... ....+...++++.+++++++|.+||||+|++|.|+.++++.+++++|||++|+||+
T Consensus 189 P~Dv~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~ 263 (612)
T PRK07789 189 PKDALQAQTTFSWPPRMDL-----PGYRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVV 263 (612)
T ss_pred ccchhhcccccccCccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEE
Confidence 9999988764211000000 00112224567889999999999999999999999989999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 251 PTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
||+.+||+||++||+++|.. .++++++||+||++|+++++..+ ++...|.+++++||||.|+.++++.+ .+
T Consensus 264 tt~~~kg~~p~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t-~~~~~~~~~~~~i~Id~d~~~i~~~~~~~ 342 (612)
T PRK07789 264 TTLMARGAFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGARFDDRVT-GKLDSFAPDAKVIHADIDPAEIGKNRHAD 342 (612)
T ss_pred EcccccccCCCCChhhccCCcccCcHHHHHHHHhCCEEEEECCCCCcccc-CChhhcCCCCcEEEEECCHHHhCCCCCCC
Confidence 99999999999999999853 45789999999999999987654 33334667789999999999997654 59
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCC--CCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCL--GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
+.+++|++.+|++|++.++...... .....|.+.+.+.+++..... ....+.++++..+++.|++.+ ++++
T Consensus 343 ~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~l~~~l----~~~~ 415 (612)
T PRK07789 343 VPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGY---DEPSDGSLAPQYVIERLGEIA----GPDA 415 (612)
T ss_pred eEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCcccc---ccccCCCcCHHHHHHHHHhhC----CCCe
Confidence 9999999999999999886431110 122456665544333221110 011235688888899998888 9999
Q ss_pred EEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
+++.|+++ ..|. ..+|+...|++|+.++++|+|||++|+|||++++.|+++|++|+|||||+|+.|||||++||++|+
T Consensus 416 ivv~d~G~~~~~~-~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv 494 (612)
T PRK07789 416 IYVAGVGQHQMWA-AQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTNQELATCAIEGIPI 494 (612)
T ss_pred EEEECCcHHHHHH-HHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcchhhhccHHHHHHHHHcCCCe
Confidence 99999554 4554 456688888999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 495 ~iv 497 (612)
T PRK07789 495 KVA 497 (612)
T ss_pred EEE
Confidence 875
No 27
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.6e-87 Score=712.34 Aligned_cols=452 Identities=25% Similarity=0.387 Sum_probs=383.9
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
++++++++|++.|+++||+||||+||+++++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~ 82 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNL 82 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhCCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHh
Confidence 45799999999999999999999999999999999987889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++|+++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++++.+++|++.|.++|||||||+||
T Consensus 83 l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 83 ATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++..+++.+...... ......++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++
T Consensus 163 ~dv~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~t 234 (552)
T PRK08617 163 QDVVDAPVTSKAIAPLS--------KPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVE 234 (552)
T ss_pred hhhhhcccccccccccc--------CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEe
Confidence 99998887632111000 1112234667899999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCCCCCC-cccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 252 TPMGKGLLPDTHP-LAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 252 t~~~~g~~~~~hp-~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
|++|||+||++|| +|+|.. .++++++||+||+||+++.++....+. +.++.++||||.|+..++..+ ++
T Consensus 235 t~~gkg~~~~~hp~~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~ 312 (552)
T PRK08617 235 TFQAAGVISRELEDHFFGRVGLFRNQPGDELLKKADLVITIGYDPIEYEPRNWN--SEGDATIIHIDVLPAEIDNYYQPE 312 (552)
T ss_pred ccccCccCCCCCchhhccCCcCCCcHHHHHHHHhCCEEEEecCccccccccccc--cCCCCcEEEEeCChHHhCCccCCC
Confidence 9999999999998 588852 457899999999999998765433222 123579999999999997655 59
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEE
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPIL 402 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~ 402 (482)
+.+.+|++.+|++|.+.++.... ......|.+...+.++.+... .......++++..+++.|++.+ ++++++
T Consensus 313 ~~i~~D~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l----~~~~ii 384 (552)
T PRK08617 313 RELIGDIAATLDLLAEKLDGLSL-SPQSLEILEELRAQLEELAER---PARLEEGAVHPLRIIRALQDIV----TDDTTV 384 (552)
T ss_pred eEEeCCHHHHHHHHHHhhhcccC-ccchHHHHHHHHHHHHHhhhh---hcccCCCCcCHHHHHHHHHHhc----CCCcEE
Confidence 99999999999999988764311 111234554433332221111 1112334688888999999988 999999
Q ss_pred EeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590 403 VSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 403 v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~ 481 (482)
+.| |.+..|..+ +++...|++++.++++|+|||++|+|||+++|.|+++||+++|||||+|++|||+|++|||+||++
T Consensus 385 ~~d~G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~ 463 (552)
T PRK08617 385 TVDVGSHYIWMAR-YFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVH 463 (552)
T ss_pred EeCCcHHHHHHHH-hccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEE
Confidence 888 566666655 457788899998888999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 011590 482 I 482 (482)
Q Consensus 482 ~ 482 (482)
|
T Consensus 464 v 464 (552)
T PRK08617 464 I 464 (552)
T ss_pred E
Confidence 4
No 28
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=3.9e-87 Score=709.04 Aligned_cols=448 Identities=24% Similarity=0.387 Sum_probs=380.5
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGL 95 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai 95 (482)
++++|++.|+++||+||||+||+++++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++||
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl 80 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGL 80 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHH
Confidence 47999999999999999999999999999999878899999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 96 SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 96 ~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
++|+.+++|||+|+|+.++...+++.+|++||..+|+++|||++++.+++++++.+++|++.|.++|||||||+||.|++
T Consensus 81 ~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~ 160 (539)
T TIGR02418 81 ATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVV 160 (539)
T ss_pred HHHhhcCCCEEEEeCCCcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHh
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
.++++........ ......++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++|++|
T Consensus 161 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~g 232 (539)
T TIGR02418 161 DSPVSVKAIPASY--------APKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232 (539)
T ss_pred hCcccccccCccc--------CCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEcccc
Confidence 8887632111000 11122345678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-Ccccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEe
Q 011590 256 KGLLPDTH-PLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLV 326 (482)
Q Consensus 256 ~g~~~~~h-p~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~ 326 (482)
||.||++| |+|+|. ..++++++||+||++|+++.++.+..+. +.++.++||||.|+.+++..+ +++.++
T Consensus 233 kg~i~~~~~~~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~ 310 (539)
T TIGR02418 233 AGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWN--SENDATIVHIDVEPAQIDNNYQPDLELV 310 (539)
T ss_pred CcCCCCCCChhhcccCcCCCcHHHHHHHHhCCEEEEecCcccccCccccC--cCCCCeEEEEeCChHHcCCccCCCeEEe
Confidence 99999997 788874 3457899999999999998866543332 233579999999999997654 599999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC-
Q 011590 327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE- 405 (482)
Q Consensus 327 ~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e- 405 (482)
+|++.+|++|.+.+++... ......|.+.+.+.++++... .......++++.++++.|++.+ +++++++.|
T Consensus 311 ~D~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~~~l----~~~~ii~~d~ 382 (539)
T TIGR02418 311 GDIASTLDLLAERIPGYEL-PPDALAILEDLKQQREALDRV---PATLKQAHLHPLEIIKAMQAIV----TDDVTVTVDM 382 (539)
T ss_pred cCHHHHHHHHHHhhccccC-ccchHHHHHHHHHHHHHhhhc---cccCCCCCcCHHHHHHHHHhhC----CCCCEEEECC
Confidence 9999999999988764311 011123544333322222110 0111234688888999999988 999999988
Q ss_pred chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|.+..|..+ +++...|++++.+.++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++|+++|
T Consensus 383 G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~iv 458 (539)
T TIGR02418 383 GSHYIWMAR-YFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHI 458 (539)
T ss_pred cHHHHHHHH-hcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEE
Confidence 555666655 4577889999998899999999999999999999999999999999999999999999999999875
No 29
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=8.7e-87 Score=711.15 Aligned_cols=456 Identities=25% Similarity=0.381 Sum_probs=385.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 379999999999999999999999999999999963 3699999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
|+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++++++++++.+++|++.|+++++|||||+
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~ 161 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVID 161 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
||.|++.++++.......+. . .........++++.+++++++|.+|+||+|++|.|++++++.+++++|+|++|+||
T Consensus 162 iP~Dv~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv 238 (572)
T PRK06456 162 IPRDIFYEKMEEIKWPEKPL-V--KGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPI 238 (572)
T ss_pred cChhHhhccccccccccccc-c--cCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCE
Confidence 99999988875311000000 0 00011122356788999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCC-CCCcEEEEeCCchhhcccC-
Q 011590 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVDVCKEEIELRK- 320 (482)
Q Consensus 250 ~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-~~~~ii~id~d~~~~~~~~- 320 (482)
++|+++||+||++||+|+|. ..++++++||+||++|++++++.+..+ ..+. +++++||||.|+..++..+
T Consensus 239 ~tt~~gkg~i~~~hp~~~G~~g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~~~~~ 317 (572)
T PRK06456 239 VSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSY-DEMVETRKKFIMVNIDPTDGEKAIK 317 (572)
T ss_pred EEcCccCcCCCCCCccccccCCCCCCHHHHHHHHhCCEEEEECCCCchhhcccc-ccccCCCCeEEEEeCChHHhCCccC
Confidence 99999999999999999985 245678999999999999987754332 2333 3678999999999987655
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
.++.+.+|++.+|++|.+.+.+... ......|.+.+...++.+.... ......++++..+++.|++.+ ++++
T Consensus 318 ~~~~i~~D~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~~~l----~~~~ 389 (572)
T PRK06456 318 VDVGIYGNAKIILRELIKAITELGQ-KRDRSAWLKRVKEYKEYYSQFY---YTEENGKLKPWKIMKTIRQAL----PRDA 389 (572)
T ss_pred CCeEEecCHHHHHHHHHHHhhhccc-ccccHHHHHHHHHHHHhchhhc---ccccCCCcCHHHHHHHHHHhC----CCCE
Confidence 5899999999999999998764210 0122457665554433322111 011234688889999999998 9999
Q ss_pred EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
+++.|++ +..|.. .+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+
T Consensus 390 ii~~d~g~~~~~~~-~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i 468 (572)
T PRK06456 390 IVTTGVGQHQMWAE-VFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPV 468 (572)
T ss_pred EEEECCcHHHHHHH-HhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCe
Confidence 9999854 455554 45677788999999899999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 469 ~iv 471 (572)
T PRK06456 469 ISV 471 (572)
T ss_pred EEE
Confidence 865
No 30
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=9.5e-87 Score=710.55 Aligned_cols=457 Identities=26% Similarity=0.407 Sum_probs=383.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh---C-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---L-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~---~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
.++++++|++.|+++||+||||+||+.+++|++++.+ . +|++|.+|||++|+|||+||+|+||||+||++|+|||+
T Consensus 9 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 88 (585)
T CHL00099 9 EKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPGA 88 (585)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCcH
Confidence 5789999999999999999999999999999999963 2 49999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
+|+++||++|+.+++|||+|+|++++...+++.+|++||..+++++|||+.++.+++++.+.+++||+.|.++|||||||
T Consensus 89 ~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l 168 (585)
T CHL00099 89 TNLVTGIATAQMDSVPLLVITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLI 168 (585)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+||.|++.++++...........+ .........++++.+++++++|.+||||+|++|.|++++++.++|++|||++|+|
T Consensus 169 ~iP~Dv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~P 247 (585)
T CHL00099 169 DIPKDVGLEKFDYYPPEPGNTIIK-ILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKIP 247 (585)
T ss_pred ecChhhhhhhcccccccccccccc-cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHHHHCCC
Confidence 999999987765311110000000 0001112345778899999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-
Q 011590 249 FLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK- 320 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~- 320 (482)
|+||+.+||+||++||+|+|.. .++++++||+||+||+++++..++ ++..|.++.++||||.|+.+++..+
T Consensus 248 V~tt~~~kg~~~~~hpl~~G~~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~i~~~~~ 326 (585)
T CHL00099 248 VTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTG-KLDEFACNAQVIHIDIDPAEIGKNRI 326 (585)
T ss_pred EEEccccCcCCCCCCCcccCCCCCCCCHHHHHHHHhCCEEEEECCCCcccccC-CHhHcCCCCeEEEEECCHHHhCCCCC
Confidence 9999999999999999999853 457889999999999999876543 3334566789999999999987555
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 398 (482)
+++.+.+|+..+|++|++.+++.... ......|.+.+.++++++.. .......++++.++++.|++.+ |
T Consensus 327 ~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~~----~- 397 (585)
T CHL00099 327 PQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPL----LIPKPSTSLSPQEVINEISQLA----P- 397 (585)
T ss_pred CCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChh----hccccCCCcCHHHHHHHHHhhC----C-
Confidence 58999999999999999987642110 01113465554433332211 0111235789989999999887 8
Q ss_pred CcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590 399 APILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 477 (482)
Q Consensus 399 ~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l 477 (482)
++|++.|+++ ..|..+ +++. .|++|+.+.++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++
T Consensus 398 d~iv~~d~G~~~~~~~~-~~~~-~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l 475 (585)
T CHL00099 398 DAYFTTDVGQHQMWAAQ-FLKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNL 475 (585)
T ss_pred CeEEEECCcHHHHHHHH-hccC-CCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCC
Confidence 8989999554 455544 4554 578999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 011590 478 MISSI 482 (482)
Q Consensus 478 ~i~~~ 482 (482)
|+++|
T Consensus 476 ~~~~v 480 (585)
T CHL00099 476 PIKII 480 (585)
T ss_pred CeEEE
Confidence 98764
No 31
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=7.1e-87 Score=713.10 Aligned_cols=451 Identities=24% Similarity=0.300 Sum_probs=382.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 81 (597)
T PRK08273 2 SQTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIH 81 (597)
T ss_pred CccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 3789999999999999999999999999999999975 36999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhcccc-ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~-k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
+++||++||.|++|||+|+|++++...+++.+|++||..+|+++| ||+.++.+++++++.+++|++.|++++ |||||+
T Consensus 82 ~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~-gPV~i~ 160 (597)
T PRK08273 82 LLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER-TVTAVI 160 (597)
T ss_pred HHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 999999999999999999999999999999999999999999999 999999999999999999999999976 999999
Q ss_pred cCcchhccccChhHHHH-HHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 170 LPTDVLHQTISVSEAEK-LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
||.|++.++++.+.... .....+ ......+.++++.+++++++|.+||||+|++|.|+. ++.+++.+|||++|+|
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae~~~~P 236 (597)
T PRK08273 161 LPNDVQELEYEPPPHAHGTVHSGV--GYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAERLGAG 236 (597)
T ss_pred eCcchhhCcccCcccccccccccc--CCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHHHhCCc
Confidence 99999987764321100 000000 001123346788999999999999999999999985 7788999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-
Q 011590 249 FLPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK- 320 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~- 320 (482)
|+||++|||+||++||+|+|.. .++++++||+||+||+++++.. +. . ..+++++||||.|+.++++.+
T Consensus 237 V~tt~~gkg~~~e~hp~~~G~~G~~g~~~a~~~~~~aDlvl~lG~~~~~~~-~~--~-~~~~~~~i~Id~d~~~~~~~~~ 312 (597)
T PRK08273 237 VAKALLGKAALPDDLPWVTGSIGLLGTKPSYELMRECDTLLMVGSSFPYSE-FL--P-KEGQARGVQIDIDGRMLGLRYP 312 (597)
T ss_pred eeecccCcccCCCCCccceecCCCCccHHHHHHHHhCCEEEEeCCCCCHHh-cC--C-CCCCCeEEEEeCCHHHcCCCCC
Confidence 9999999999999999999843 5678999999999999986432 11 0 123578999999999987554
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
+++.+++|++.+|++|++.++.. ....|.+.+.+.++++..........+..++++..+++.|++.+ |+++
T Consensus 313 ~~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l----~~~~ 383 (597)
T PRK08273 313 MEVNLVGDAAETLRALLPLLERK-----KDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRL----PDNA 383 (597)
T ss_pred CCceEecCHHHHHHHHHHhhhcc-----CCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhC----CCCe
Confidence 58999999999999999988643 23458776666665554333221112345789999999999988 9999
Q ss_pred EEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCC-hHHHHHHHHc---
Q 011590 401 ILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS-AVEVEVWLSC--- 475 (482)
Q Consensus 401 i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~-~~eL~T~~r~--- 475 (482)
|++.| |.+..|..+ +|+...+++++.++++|+|||++|+|||+++|.|+++||+|+|||||+|+ +|||+|++||
T Consensus 384 ivv~d~G~~~~~~~~-~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~ 462 (597)
T PRK08273 384 ILTADSGSCANWYAR-DLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQ 462 (597)
T ss_pred EEEECCcHHHHHHHH-hCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhc
Confidence 99988 555666655 46777788999999999999999999999999999999999999999999 6999999999
Q ss_pred --CcccccC
Q 011590 476 --IIMISSI 482 (482)
Q Consensus 476 --~l~i~~~ 482 (482)
|+|+++|
T Consensus 463 ~~~lpviiv 471 (597)
T PRK08273 463 WSDPRLIVL 471 (597)
T ss_pred ccCCCEEEE
Confidence 8998765
No 32
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=1.5e-86 Score=707.60 Aligned_cols=447 Identities=23% Similarity=0.360 Sum_probs=378.4
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 4799999999999999999999999999999975 36999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
||++||.+++|||+|+|++++...+.+.+|++||.++|+++|||+.++.+++++++.+++|++.|++ ++|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~D 159 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVD 159 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhh-CCCCEEEEECcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 569999999999
Q ss_pred hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
++.++++.......+. .......+.++++.+++++++|++||||+|++|.|++ ++.++|.+|||++|+||+||+
T Consensus 160 v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV~tt~ 233 (575)
T TIGR02720 160 FGWQEIPDNDYYASSV----SYQTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPLISTG 233 (575)
T ss_pred hhhccccccccccccc----cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCEEEcc
Confidence 9988876422110000 0001223456788999999999999999999999996 577899999999999999999
Q ss_pred CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590 254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL 325 (482)
Q Consensus 254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i 325 (482)
++||+||++||+|+|.. .++++++||+||++|+++++... . ..+.++.++||||.|+..+++.+ +++.+
T Consensus 234 ~gkg~~~~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i 310 (575)
T TIGR02720 234 LAKGIIEDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYPFAEV-S--KAFKNTKYFIQIDIDPAKLGKRHHTDIAV 310 (575)
T ss_pred cccccCCCCCcccccCCcCCCcHHHHHHHHhCCEEEEeCCCCCcccc-c--cccCCCceEEEEeCCHHHhCCCCCCCeEE
Confidence 99999999999999853 45788999999999999875432 1 12444455699999999997665 48999
Q ss_pred eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590 326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405 (482)
Q Consensus 326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e 405 (482)
.+|++.+|++|++.++.. ....|.+...+..++++...+........++++..+++.|++.+ |+++|++.|
T Consensus 311 ~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~d~ii~~D 381 (575)
T TIGR02720 311 LADAKKALAAILAQVEPR-----ESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIA----EDDAIYSID 381 (575)
T ss_pred ecCHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhC----CCCcEEEeC
Confidence 999999999999987643 12346544333333333222111122345788889999999988 999999988
Q ss_pred -chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|.+..|..+ +++...|++|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||+|++||++|+++|
T Consensus 382 ~g~~~~~~~~-~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~V 458 (575)
T TIGR02720 382 VGDININSNR-HLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINI 458 (575)
T ss_pred CcHHHHHHHH-hCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEE
Confidence 555666655 5688889999999889999999999999999999999999999999999999999999999999865
No 33
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=2.6e-86 Score=706.00 Aligned_cols=446 Identities=27% Similarity=0.398 Sum_probs=380.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
.+++++++|++.|+++||+||||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~ 81 (576)
T PRK08611 2 AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAI 81 (576)
T ss_pred CCCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHH
Confidence 35799999999999999999999999999999999964 5799999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
|+++||++||.+++|||+|+|++++...+++.+|++||..+|+++|||++++.+++++++.+++|++.|.+++ |||||+
T Consensus 82 N~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~-GPV~l~ 160 (576)
T PRK08611 82 HLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLT 160 (576)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 999999
Q ss_pred cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
||.|++.++++.......+. .....+.++++.+++++++|.+||||+|++|+|++ ++.+++.+|||++|+||
T Consensus 161 iP~Dv~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~PV 232 (576)
T PRK08611 161 IPDDLPAQKIKDTTNKTVDT------FRPTVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAKIPI 232 (576)
T ss_pred eChhhhhccccccccccccc------CCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhCCCE
Confidence 99999988875321110000 01123346778899999999999999999999986 56789999999999999
Q ss_pred eeCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590 250 LPTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P 321 (482)
Q Consensus 250 ~~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~ 321 (482)
++|+++||++|++||+++|.. .++++++||+||+||+++++.. .+.++.++||||.|+.+++..+ +
T Consensus 233 ~tt~~gkg~~~~~hp~~~G~~g~~~~~~a~~~l~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~i~~~~~~ 306 (576)
T PRK08611 233 IHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGTNYPYVD------YLPKKAKAIQIDTDPANIGKRYPV 306 (576)
T ss_pred EEccccccccCCCCccccccCCCCCcHHHHHHHHhCCEEEEeCCCCCccc------cCCCCCcEEEEeCCHHHcCCccCC
Confidence 999999999999999999843 4578899999999999886432 1344579999999999997654 5
Q ss_pred ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590 322 HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 322 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 401 (482)
++.+++|++.+|++|.+.++.. ....|.+.+.+.++++....+......+.++++..+++.|++.+ |++++
T Consensus 307 ~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l----~~~~i 377 (576)
T PRK08611 307 NVGLVGDAKKALHQLTENIKHV-----EDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIA----DDDAV 377 (576)
T ss_pred CeeEecCHHHHHHHHHHhcccc-----cchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhc----CCCeE
Confidence 8999999999999999987642 22357665544444443322221112334688888899998888 99999
Q ss_pred EEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590 402 LVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 480 (482)
Q Consensus 402 ~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~ 480 (482)
++.|+ .+..|..+ +++...|++|+.+.++|+|||++|+|||++++.|+++||+|+|||||+|++|||+|++||++|++
T Consensus 378 vv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~i 456 (576)
T PRK08611 378 LSVDVGTVTVWSAR-YLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIV 456 (576)
T ss_pred EEEcChHHHHHHHh-cCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeE
Confidence 99885 45556555 46777888999888899999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 011590 481 SI 482 (482)
Q Consensus 481 ~~ 482 (482)
+|
T Consensus 457 iv 458 (576)
T PRK08611 457 VV 458 (576)
T ss_pred EE
Confidence 64
No 34
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=3.1e-86 Score=704.29 Aligned_cols=451 Identities=25% Similarity=0.353 Sum_probs=383.5
Q ss_pred CCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 9 ~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
..+..++++|+|++.|+++||+||||+||+.+++|++++.+. +|++|.++||++|+|||+||+|+||||+||++|+|||
T Consensus 3 ~~~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG 82 (557)
T PRK08199 3 STPRARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPG 82 (557)
T ss_pred cccccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 345568999999999999999999999999999999999765 5999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~ 167 (482)
++|+++||++||.+++|||+|+|+++....+++.+|++||..+|+++|||++++.+++++++.+++|++.|+++|+||||
T Consensus 83 ~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~ 162 (557)
T PRK08199 83 ATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVV 162 (557)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (482)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~ 247 (482)
|+||.|++.++++....... ......++++.+++++++|.+||||+|++|.|+.++++.+++.+|||++|+
T Consensus 163 l~iP~dl~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~ 233 (557)
T PRK08199 163 LALPEDVLSETAEVPDAPPY---------RRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGL 233 (557)
T ss_pred EEcCHhHhhCcccccccCCc---------CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCC
Confidence 99999999887653211000 112334667889999999999999999999999988999999999999999
Q ss_pred cEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCC--CCCCCcEEEEeCCchhhcc
Q 011590 248 PFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPK--WSKDVKFVLVDVCKEEIEL 318 (482)
Q Consensus 248 pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~--~~~~~~ii~id~d~~~~~~ 318 (482)
||++|+.+||++|++||+|+|. ..++++++||+||++|++++++.+.++... ..++.++||||.|+..++.
T Consensus 234 pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~ 313 (557)
T PRK08199 234 PVACAFRRQDLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGR 313 (557)
T ss_pred CEEEcCCcCCCCCCCChhhccCCcCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCC
Confidence 9999999999999999999984 345788999999999999987664333211 1246789999999999876
Q ss_pred cC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590 319 RK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397 (482)
Q Consensus 319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 397 (482)
.+ .++.+++|++.+|++|.+.++. ....|.+.+.+.++++....+ ......++++..+++.|++.+ |
T Consensus 314 ~~~~~~~i~~D~~~~l~~L~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~l----~ 381 (557)
T PRK08199 314 VYRPDLAIVADPAAFAAALAALEPP------ASPAWAEWTAAAHADYLAWSA--PLPGPGAVQLGEVMAWLRERL----P 381 (557)
T ss_pred ccCCCeEEecCHHHHHHHHHhcccc------cchhHHHHHHHHHHHHHhhcc--ccCCCCCcCHHHHHHHHHHhC----C
Confidence 54 5899999999999999886432 123465554444333321111 011224688888999999988 9
Q ss_pred CCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 398 PAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 398 ~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
++++++.|+ .+..|+.+ +++...++.++.+ ++|+|||++|+|||+++++|+++||+|+|||||+|+.|||+|++||+
T Consensus 382 ~~~ii~~d~g~~~~~~~~-~~~~~~~~~~~~~-~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~ 459 (557)
T PRK08199 382 ADAIITNGAGNYATWLHR-FFRFRRYRTQLAP-TSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYG 459 (557)
T ss_pred CCeEEEECChHHHHHHHH-hcCcCCCCeEECC-CCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhC
Confidence 999999995 44555544 5677778888865 56999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
+||++|
T Consensus 460 l~i~~v 465 (557)
T PRK08199 460 LPIIVI 465 (557)
T ss_pred CCeEEE
Confidence 999875
No 35
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.9e-86 Score=706.38 Aligned_cols=458 Identities=23% Similarity=0.346 Sum_probs=386.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
++++++++|++.|+++||+||||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N 81 (574)
T PRK06882 2 KKLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHH
Confidence 34799999999999999999999999999999999976 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||+.++++++++.+.+++|++.|.++|+|||||+|
T Consensus 82 ~l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~i 161 (574)
T PRK06882 82 AITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDI 161 (574)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++....+... ..+...+ .....+...+++..+++++++|.+||||+|++|.|++++++.++|.+|||++|+||+
T Consensus 162 P~Dv~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~ 238 (574)
T PRK06882 162 PKDMVNPANKFTY--EYPEEVS-LRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVT 238 (574)
T ss_pred CHHHhhhhccccc--ccCcccc-cccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 9999876643110 0000000 000011123467789999999999999999999999988999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 251 PTPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
+|++|||+||++||+|+|.. .++++++||+||+||++++++.+.+ ...+.+++++||||.|+..++..+ ++
T Consensus 239 tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~-~~~~~~~~~~I~id~d~~~~~~~~~~~ 317 (574)
T PRK06882 239 SSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNN-LAKYCPNAKVIHIDIDPTSISKNVPAY 317 (574)
T ss_pred EcCccCcCCCCCChhhcCCCcccccHHHHHHHHhCCEEEEECCCCCccccCc-hhhcCCCCeEEEEECCHHHhcCccCCc
Confidence 99999999999999999853 4568999999999999998876533 333566789999999999987655 49
Q ss_pred eeEeccHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPF--CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
+.+.+|+..+|++|.+.+..... .......|.+.+.+++++.... .+....++++..+++.|++.+ ++++
T Consensus 318 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~~~l----~~~~ 389 (574)
T PRK06882 318 IPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKKCLE----FDRTSDVIKPQQVVEAIYRLT----NGDA 389 (574)
T ss_pred eEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhChhh----hccCCCCcCHHHHHHHHHhhc----CCCe
Confidence 99999999999999998754210 0112245766654443332111 111224678888999999887 8899
Q ss_pred EEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
+++.|+++ ..|. ..+++...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|+
T Consensus 390 ii~~d~g~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv 468 (574)
T PRK06882 390 YVASDVGQHQMFA-ALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPV 468 (574)
T ss_pred EEEecCchhHHHH-HHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCe
Confidence 99999554 4554 455688889999999899999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 469 ~~v 471 (574)
T PRK06882 469 VIV 471 (574)
T ss_pred EEE
Confidence 865
No 36
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=4e-86 Score=700.65 Aligned_cols=443 Identities=25% Similarity=0.396 Sum_probs=372.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG 94 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a 94 (482)
+++|+|++.|+++||+||||+||+.++++++++.+++|++|.++||++|++||+||+|+||||+||++|+|||++|+++|
T Consensus 3 ~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~g 82 (535)
T PRK07524 3 TCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATA 82 (535)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH
Confidence 78999999999999999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCcEEEEeCCCCcccCCCC--CCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 95 LSNGMINTWPIVMISGSCDQKDFGRG--DFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
|++||.+++|||+|+|+.++...+++ .+|+ +||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+||
T Consensus 83 i~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 83 MGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred HHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 99999999999999999998877753 5666 59999999999999999999999999999999999999999999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++..... ++ .....+.++++.+++++++|.+||||+|++|.|++ ++.++|.+|||++++||++
T Consensus 163 ~Dv~~~~~~~~~~~--~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~pV~t 232 (535)
T PRK07524 163 LDVLAAPADHLLPA--PP------TRPARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLDAPVAL 232 (535)
T ss_pred HhHHhcccccccCc--cc------ccCCCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHCCCEEE
Confidence 99999887642111 00 01123346778899999999999999999999986 6789999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-----HHHhhhcCCEEEEecCccCcccccC-CCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590 252 TPMGKGLLPDTHPLAATAA-----RSLAIGQCDVALVVGARLNWLLHFG-EPPKWSKDVKFVLVDVCKEEIELRK-PHLG 324 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-----~~~~l~~aDlvl~iG~~~~~~~~~g-~~~~~~~~~~ii~id~d~~~~~~~~-~~~~ 324 (482)
|+++||.||++||+|+|.. .++++++||+||++|+++++..... +...|.++.++||||.|+.++++.+ .++.
T Consensus 233 t~~~kg~~p~~hp~~~G~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 312 (535)
T PRK07524 233 TINAKGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALA 312 (535)
T ss_pred cccccccCCCCChhhccCCCCCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCce
Confidence 9999999999999999853 5678999999999999987543211 1123556789999999999987554 5999
Q ss_pred EeccHHHHHHHHHHhhhcCCCCCCCChHHHHH-HHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEA-IWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
+.+|++.+|++|.+.++.+. ....|... ..+.+++... .. +...+.+..+++.|++.+ | +.+++
T Consensus 313 i~~D~~~~L~~L~~~l~~~~----~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~l~~~l----~-~~~i~ 377 (535)
T PRK07524 313 LVGDARAALEALLARLPGQA----AAADWGAARVAALRQALRA----EW--DPLTAAQVALLDTILAAL----P-DAIFV 377 (535)
T ss_pred EecCHHHHHHHHHHhccccC----CchhhHHHHHHHHHHhchh----hc--cccccCHHHHHHHHHHhC----C-CCEEE
Confidence 99999999999999886531 22346422 2222221111 11 122345566788888877 7 57777
Q ss_pred eCchhHHHHHHHhhhcCCCCeeec-CCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SEGANTMDVGRAVLVQTEPRCRLD-AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~eg~~~~~~~~~~~~~~~~~~~~~-~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.|+++..++...+++...|++|+. ++++|+|||++|+|||+++|+|+++||+++|||||+|++|||||++|||+|+++|
T Consensus 378 ~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~v 457 (535)
T PRK07524 378 GDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVL 457 (535)
T ss_pred eCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEE
Confidence 775544434444568888999998 8889999999999999999999999999999999999999999999999999864
No 37
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=8.1e-86 Score=701.71 Aligned_cols=452 Identities=29% Similarity=0.441 Sum_probs=386.2
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH-hCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~-~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
|+++++|++.|+++||+||||+||+.+++|++++. +.+|++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 57999999999999999999999999999999997 47899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++|+.+++|||+|+|++++...+++.+|++||..+++++|||++++++++++.+.+++|++.|.++|+|||||+||.
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
|++.++++.......+. ....+...+.+..+++++++|.+||||+|++|+|++++++.++|.+|||++|+||++|
T Consensus 161 dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt 235 (558)
T TIGR00118 161 DVTTAEIEYPYPEKVNL-----PGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTT 235 (558)
T ss_pred hhhhhhccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 99988765311100000 0001111345678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590 253 PMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLG 324 (482)
Q Consensus 253 ~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~ 324 (482)
+++||++|++||+|+|.. .++++++||+||+||+++++..+ +++..|.++.++||||.|+..++..+ +++.
T Consensus 236 ~~~kg~~~e~hp~~~G~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~ 314 (558)
T TIGR00118 236 LMGLGSFPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVT-GNLAKFAPNAKIIHIDIDPAEIGKNVRVDIP 314 (558)
T ss_pred cccCCCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEECCCCCcccc-CchhhcCCCCcEEEEeCCHHHhCCcCCCCeE
Confidence 999999999999999852 46789999999999999987654 33333556789999999999886554 5999
Q ss_pred EeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEe
Q 011590 325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404 (482)
Q Consensus 325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~ 404 (482)
+.+|+..+|++|.+.++... ......|.+.+.+++++.... ......++++..+++.|++.+ |+++|++.
T Consensus 315 i~~d~~~~l~~L~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~ 384 (558)
T TIGR00118 315 IVGDARNVLEELLKKLFELK--ERKESAWLEQINKWKKEYPLK----MDYTEEGIKPQQVIEELSRVT----KDEAIVTT 384 (558)
T ss_pred EecCHHHHHHHHHHhhhhcc--ccCcHHHHHHHHHHHHhChhh----ccCCCCCcCHHHHHHHHHhhC----CCCeEEEe
Confidence 99999999999999875421 012345766554443332111 112234688888899998888 99999999
Q ss_pred Cch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 405 EGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 405 eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|++ +..|. ..+|+...|++|+.++++|+|||++|+|||+++|.|+++||+++|||||+|++|||||++|+++|+++|
T Consensus 385 d~g~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~v 462 (558)
T TIGR00118 385 DVGQHQMWA-AQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKIL 462 (558)
T ss_pred CCcHHHHHH-HHhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 954 44554 445688889999999999999999999999999999999999999999999999999999999998865
No 38
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.1e-85 Score=703.15 Aligned_cols=455 Identities=26% Similarity=0.414 Sum_probs=386.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
++++|+|++.|+++||++|||+||+++++|++++.+.+|++|.++||++|++||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~ 80 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVT 80 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHH
Confidence 57999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
||++|+.+++|||+|+|+++....+++.+|++||.++++++|||++++++++++++.+++|++.|+++|+|||||+||.|
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 81 GIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
++.++++..... .+... ......+...+++..+++++++|.+||||+|++|.|++++++.+++.+|||++|+||++|+
T Consensus 161 v~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 238 (586)
T PRK06276 161 VQEGELDLEKYP-IPAKI-DLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTL 238 (586)
T ss_pred HHhhhhcccccc-ccccc-cccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 998876532110 00000 0000011123457789999999999999999999999989999999999999999999999
Q ss_pred CCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeE
Q 011590 254 MGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGL 325 (482)
Q Consensus 254 ~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i 325 (482)
++||+||++||+|+|.. .++++++||+||+||+++++..+. .+..|.++.++||||.|+..++..+ +++.+
T Consensus 239 ~~kg~~p~~hp~~~G~~G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~-~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i 317 (586)
T PRK06276 239 MGKGAFPEDHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTTG-DISSFAPNAKIIHIDIDPAEIGKNVRVDVPI 317 (586)
T ss_pred CCCccCCCCCcccccCCCCCCCHHHHHHHHcCCEEEEECCCCCccccC-CccccCCCCeEEEEECCHHHhCCcCCCceEE
Confidence 99999999999999853 457899999999999999876543 3334567789999999999886554 59999
Q ss_pred eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC-----Cc
Q 011590 326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP-----AP 400 (482)
Q Consensus 326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~ 400 (482)
++|++.+|++|++.+..... .....|.+.+.+.+.++... ......++++..+++.|++.+ ++ ++
T Consensus 318 ~~D~~~~L~~L~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~l~~~l----~~~~~~~~~ 387 (586)
T PRK06276 318 VGDAKNVLRDLLAELMKKEI--KNKSEWLERVKKLKKESIPR----MDFDDKPIKPQRVIKELMEVL----REIDPSKNT 387 (586)
T ss_pred ecCHHHHHHHHHHhhhhhcc--cchHHHHHHHHHHHHhcccc----ccCCCCCcCHHHHHHHHHHhc----cccCCCCCe
Confidence 99999999999998764211 12345765554433322111 011234688888999999888 87 89
Q ss_pred EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
|++.|++ +..|.. .+|+...|++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||||++||++|+
T Consensus 388 iv~~d~G~~~~~~~-~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 466 (586)
T PRK06276 388 IITTDVGQNQMWMA-HFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPV 466 (586)
T ss_pred EEEeCCcHHHHHHH-HhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence 9999954 455554 45688889999999899999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 467 ~~v 469 (586)
T PRK06276 467 VIC 469 (586)
T ss_pred EEE
Confidence 865
No 39
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-85 Score=700.61 Aligned_cols=443 Identities=19% Similarity=0.291 Sum_probs=378.6
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
++++++|++.|+++||+|+||+||+++++|++++.+. +|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 3 ~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~ 82 (578)
T PRK06546 3 KTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLI 82 (578)
T ss_pred ccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHH
Confidence 7999999999999999999999999999999999764 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++|+.+++|||+|+|+++....+++.+|++||.++|+++|||++++++++++++.+++|++.|++ +||||||+||.
T Consensus 83 ~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~lP~ 161 (578)
T PRK06546 83 NGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVA-GGGVSVVTLPG 161 (578)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhc-CCCCEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 56999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
|++.+++++....... ........++++.+++++++|++||||+|++|+|++ ++.+++.+|||++|+||++|
T Consensus 162 Dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~Pv~~t 233 (578)
T PRK06546 162 DIADEPAPEGFAPSVI------SPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAPVGHS 233 (578)
T ss_pred hhhhcccccccccccc------ccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcceEEC
Confidence 9998887642110000 001122346778999999999999999999999996 67899999999999999999
Q ss_pred CCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590 253 PMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLG 324 (482)
Q Consensus 253 ~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~ 324 (482)
+++||+||++||+++|. ..++++++||+||+||+++++. .|.++.++||||.|+.++++.+ +++.
T Consensus 234 ~~gkg~~~~~hp~~~G~~G~~~~~~~~~~l~~aDlvl~lG~~~~~~-------~~~~~~~~I~vd~d~~~~~~~~~~~~~ 306 (578)
T PRK06546 234 LRGKEWIQYDNPFDVGMSGLLGYGAAHEAMHEADLLILLGTDFPYD-------QFLPDVRTAQVDIDPEHLGRRTRVDLA 306 (578)
T ss_pred cccccCCCCCCccccCCCCCCCCHHHHHHHHhCCEEEEEcCCCChh-------hcCCCCcEEEEeCCHHHhCCCCCCCeE
Confidence 99999999999999984 3567899999999999987632 1344578999999999997664 5899
Q ss_pred EeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhh---hcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590 325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL---AKDVVPFNFMTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 401 (482)
+.+|++.+|++|.+.+++. ....|.+.+.++++++........ ..+..++++..+++.|++.+ ++++|
T Consensus 307 i~~D~~~~l~~L~~~L~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~~~~i 377 (578)
T PRK06546 307 VHGDVAETIRALLPLVKEK-----TDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELA----ADDAV 377 (578)
T ss_pred EEcCHHHHHHHHHHhhccc-----CChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhc----cCCcE
Confidence 9999999999999988643 123466544333333221111111 11234688888999999888 89999
Q ss_pred EEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590 402 LVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 480 (482)
Q Consensus 402 ~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~ 480 (482)
++.|+ .+..|..+ ++...++++++.++.+|+|||++|+|||+++|+|+++||+|+|||||+|++|||+|++||++|++
T Consensus 378 vv~d~G~~~~~~~~-~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~ 456 (578)
T PRK06546 378 FTVDTGMCNVWAAR-YITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVK 456 (578)
T ss_pred EEECCcHHHHHHHH-hcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeE
Confidence 99984 55566655 45777888999888899999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011590 481 SI 482 (482)
Q Consensus 481 ~~ 482 (482)
+|
T Consensus 457 ~v 458 (578)
T PRK06546 457 VV 458 (578)
T ss_pred EE
Confidence 75
No 40
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-85 Score=698.75 Aligned_cols=445 Identities=21% Similarity=0.320 Sum_probs=378.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++++|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (574)
T PRK09124 2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL 81 (574)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence 3799999999999999999999999999999999975 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++|+.+++|||+|+|++++...+++.+|++||..+|+++|||++++++++++++.+++|++.|+++ +|||||+||
T Consensus 82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~-~gPV~l~iP 160 (574)
T PRK09124 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILN-RGVAVVVLP 160 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 599999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++.++++.......+. .......+++..+++++++|.+||||+|++|+|+ .++.+++.+|||++|+||++
T Consensus 161 ~Dv~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~--~~a~~~l~~lae~l~~PV~t 232 (574)
T PRK09124 161 GDVALKPAPERATPHWYH------APQPVVTPAEEELRKLAALLNGSSNITLLCGSGC--AGAHDELVALAETLKAPIVH 232 (574)
T ss_pred hhhhhCcccccccccccc------CCCCCCCCCHHHHHHHHHHHHcCCCCEEEECcCh--HhHHHHHHHHHHHhCCceEE
Confidence 999998876421100000 0111223466789999999999999999999998 36789999999999999999
Q ss_pred CCCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|++|||+||++||+++|.. .+.++++||+||+||+++++.. .+.+++++||||.|+.+++..+ +++
T Consensus 233 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~~ 306 (574)
T PRK09124 233 ALRGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTDFPYRQ------FYPTDAKIIQIDINPGSLGRRSPVDL 306 (574)
T ss_pred cccccccCCCCCcccccCCccCCCHHHHHHHHhCCEEEEECCCCCccc------ccCCCCcEEEeeCCHHHhCCCCCCCe
Confidence 9999999999999999852 4578899999999999886431 1345579999999999997655 599
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhh--hcCCCCCCcccHHHHHHHHHhccCCCCcE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL--AKDVVPFNFMTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 401 (482)
.+.+|++.+|++|.+.++.. ....|.+.+.+..++++....... .....++++..+++.|++.+ +++++
T Consensus 307 ~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~i 377 (574)
T PRK09124 307 GLVGDVKATLAALLPLLEEK-----TDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFA----ADDAI 377 (574)
T ss_pred EEEccHHHHHHHHHHhhhcc-----CChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhc----CCCcE
Confidence 99999999999999877542 123465544333333322211111 11234688888899998888 99999
Q ss_pred EEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccc
Q 011590 402 LVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMIS 480 (482)
Q Consensus 402 ~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~ 480 (482)
++.| |.+..|..+ +++...+++|+.++++|+|||++|+|||+++|.|+++||+|+|||||+|++|||+|++||++|++
T Consensus 378 vv~d~g~~~~~~~~-~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ 456 (574)
T PRK09124 378 FTCDVGTPTVWAAR-YLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVK 456 (574)
T ss_pred EEEcCCHHHHHHHH-hcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeE
Confidence 9999 555666655 45778889999998999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 011590 481 SI 482 (482)
Q Consensus 481 ~~ 482 (482)
+|
T Consensus 457 iv 458 (574)
T PRK09124 457 IV 458 (574)
T ss_pred EE
Confidence 65
No 41
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-85 Score=692.11 Aligned_cols=435 Identities=22% Similarity=0.358 Sum_probs=368.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
++++++|++.|+++||+||||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~ 81 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLN 81 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhcCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHH
Confidence 58999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++++.+++|++.|+++ +|||||+||.|
T Consensus 82 ~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~D 160 (549)
T PRK06457 82 GLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISK-RGVAHINLPVD 160 (549)
T ss_pred HHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 59999999999
Q ss_pred hhccccChhHHHHHHHhhhhhcccccCCCCC-HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIV-NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
++..+.+... ... ...+.+. ...+++++++|++||||+|++|.|++ ++.+++++|||++|+||++|
T Consensus 161 v~~~~~~~~~-~~~----------~~~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~PV~tt 227 (549)
T PRK06457 161 ILRKSSEYKG-SKN----------TEVGKVKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYT 227 (549)
T ss_pred Hhhccccccc-ccc----------cCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCCEEEc
Confidence 9887754211 000 0111122 35789999999999999999999986 66789999999999999999
Q ss_pred CCCCCCCCCCCCcccchH-------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Ccee
Q 011590 253 PMGKGLLPDTHPLAATAA-------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLG 324 (482)
Q Consensus 253 ~~~~g~~~~~hp~~~G~~-------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~ 324 (482)
++|||+||++||+++|.. .++++++||+||++|+++++.. .+.++.++||||.|+.++++.+ .++.
T Consensus 228 ~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~------~~~~~~~ii~id~d~~~~~~~~~~~~~ 301 (549)
T PRK06457 228 LNGKGILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVN------FLNKSAKVIQVDIDNSNIGKRLDVDLS 301 (549)
T ss_pred ccccccCCCCChhhccCCCCCCCHHHHHHHHhCCEEEEECCCCChhh------cCCCCCcEEEEeCCHHHhCCCCCCCeE
Confidence 999999999999999853 4578899999999999986532 1344679999999999997554 4999
Q ss_pred EeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEe
Q 011590 325 LVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404 (482)
Q Consensus 325 i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~ 404 (482)
+.+|++.+|+.+... . ...|.+...+.+.+|...+.........++++.++++.|++.+ |++++++.
T Consensus 302 i~~d~~~~l~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l----~~~~iiv~ 368 (549)
T PRK06457 302 YPIPVAEFLNIDIEE---K------SDKFYEELKGKKEDWLDSISKQENSLDKPMKPQRVAYIVSQKC----KKDAVIVT 368 (549)
T ss_pred EecCHHHHHHHHhhc---c------cchhHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHhhC----CCCeEEEE
Confidence 999999999543221 1 1124333333333343333222222345788889999999988 99999988
Q ss_pred C-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCC-CCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 405 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACP-ERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 405 e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p-~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
| |.+..|..+ +++...|++|+.+.++|+|||++|+|||+++|+| +|+||+|+|||||+|++|||||++||++|+++|
T Consensus 369 d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~iv 447 (549)
T PRK06457 369 DTGNVTMWTAR-HFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKII 447 (549)
T ss_pred CCcHHHHHHHH-hCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEE
Confidence 8 455666554 4577778999998889999999999999999998 999999999999999999999999999999865
No 42
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2.4e-84 Score=692.68 Aligned_cols=461 Identities=24% Similarity=0.343 Sum_probs=380.5
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+.+++++++|++.|+++||++|||+|+... +.+++.+.+|++|.+|||++|+|||+||+|+||||+||++|+|||++|
T Consensus 11 ~~~~~~a~~i~~~L~~~GV~~vFG~~~~~~--~~~~~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 88 (578)
T PRK06112 11 TLNGTVAHAIARALKRHGVEQIFGQSLPSA--LFLAAEAIGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATL 88 (578)
T ss_pred ccCcCHHHHHHHHHHHCCCCEEeecccchH--hHHHHhhcCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHH
Confidence 457799999999999999999999986642 345566678999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++||.+++|||+|+|+++....+++.+|++||..+|+++|||+.++.+++++++.+++|++.|+++|+|||||+|
T Consensus 89 ~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 168 (578)
T PRK06112 89 LVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLL 168 (578)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++.+....... . ...+.....+++..+++++++|.+||||+|++|.|+.++++.+++.+|||++|+||+
T Consensus 169 P~Dv~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~ 245 (578)
T PRK06112 169 PADLLTAAAAAPAAPRSNS-L--GHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVA 245 (578)
T ss_pred CHhHhhCccccccCccccc-c--cCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEE
Confidence 9999988876421110000 0 000112234667889999999999999999999999989999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccchH------------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590 251 PTPMGKGLLPDTHPLAATAA------------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL 318 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~~------------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~ 318 (482)
+|+++||+||++||+|+|.. .++++++||+||+||++++++.+.++ ..+.++.++||||.|+.+++.
T Consensus 246 ~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~ 324 (578)
T PRK06112 246 TTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW-SLYPEQAQYIHIDVDGEEVGR 324 (578)
T ss_pred EcccccccCCCCCccccccccccCCCccchHHHHHHHHhCCEEEEECCCCCccccccc-cccCCCCeEEEEECChHHhCc
Confidence 99999999999999998852 34678999999999999998765443 335567899999999999876
Q ss_pred cCCceeEeccHHHHHHHHHHhhhcCCCC--CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccC
Q 011590 319 RKPHLGLVGDAKKVLEMINKEIKDEPFC--LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 396 (482)
Q Consensus 319 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 396 (482)
.++++.+.+|++.+|++|.+.+.+.... ...+..|.+...+..+++.............++++.++++.|++.+
T Consensus 325 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l---- 400 (578)
T PRK06112 325 NYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVL---- 400 (578)
T ss_pred cccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhC----
Confidence 6667999999999999999887543111 0122345443333222221111111112234688888999999888
Q ss_pred CCCcEEEeCch-hHHHHHHHhhhcCCCC-eeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHH
Q 011590 397 SPAPILVSEGA-NTMDVGRAVLVQTEPR-CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS 474 (482)
Q Consensus 397 ~~~~i~v~eg~-~~~~~~~~~~~~~~~~-~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r 474 (482)
|++++++.|++ +..|..+ +++...++ .|+.+.++|+|||++|+|+|+++|+|+++||+|+|||||+|++|||+|++|
T Consensus 401 ~~~~ivv~d~g~~~~~~~~-~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~~~el~ta~~ 479 (578)
T PRK06112 401 TGDTIVVADASYSSIWVAN-FLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGFAHVWAELETARR 479 (578)
T ss_pred CCCCEEEEcccHHHHHHHH-hcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHHHhHHHHHHHHHH
Confidence 99999998855 4555544 45655555 688888899999999999999999999999999999999999999999999
Q ss_pred cCcccccC
Q 011590 475 CIIMISSI 482 (482)
Q Consensus 475 ~~l~i~~~ 482 (482)
||+|+++|
T Consensus 480 ~~l~~~~v 487 (578)
T PRK06112 480 MGVPVTIV 487 (578)
T ss_pred hCCCeEEE
Confidence 99999865
No 43
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1e-84 Score=692.77 Aligned_cols=451 Identities=21% Similarity=0.271 Sum_probs=377.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC------CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL------GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~------~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp 86 (482)
.++++|+|++.|+++||+|+||+||+++++|++++.+. +|++|.+|||++|++||+||+|+||||+||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 46899999999999999999999999999999999642 399999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCC--------CCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHH
Q 011590 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR--------GDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLER 157 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--------~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~ 157 (482)
|++|+++||++||.|++|||+|+|+.+....++ +.+|+ +||..+|+++|||+.++++++++.+.+++|++.
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~ 165 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQI 165 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776554 35898 699999999999999999999999999999999
Q ss_pred hhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHH
Q 011590 158 AVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237 (482)
Q Consensus 158 a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~ 237 (482)
|.++|+|||||+||.|++.++++...... +. ......+.++++.+++++++|++||||+|++|+|++++++.++
T Consensus 166 a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~ 239 (569)
T PRK08327 166 AMSEPKGPVYLTLPREVLAEEVPEVKADA-GR-----QMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFAS 239 (569)
T ss_pred HhcCCCCCEEEECcHHHHhhhccccccCc-cc-----cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHH
Confidence 99999999999999999998876421110 00 0012234567789999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhc
Q 011590 238 LKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 238 l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~ 317 (482)
+.+|||++++||++|+++||.||++||+|+|...++++++|||||+||+++++..+.. .+.++.++||||.|+.+++
T Consensus 240 l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~lG~~l~~~~~~~---~~~~~~~vi~Id~d~~~~~ 316 (569)
T PRK08327 240 LRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLVVDSDVPWIPKKI---RPDADARVIQIDVDPLKSR 316 (569)
T ss_pred HHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEEeCCCCCCccccc---cCCCCCeEEEEeCChhhhc
Confidence 9999999999999999999999999999999888889999999999999987654322 1456789999999999875
Q ss_pred c---cC-CceeEeccHHHHHHHHHHhhhcCCCCCC-----CChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHH
Q 011590 318 L---RK-PHLGLVGDAKKVLEMINKEIKDEPFCLG-----KNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRII 388 (482)
Q Consensus 318 ~---~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 388 (482)
. .+ .++.+++|++.+|++|++.++....... ....|.+...+.+..+..... ....+.++++..+++.|
T Consensus 317 ~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l 394 (569)
T PRK08327 317 IPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIE--RLKDRGPITPAYLSYCL 394 (569)
T ss_pred ccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhh--ccCCCCCcCHHHHHHHH
Confidence 2 33 4899999999999999998864311000 011344332222111111100 01233578999999999
Q ss_pred HHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHH
Q 011590 389 RDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 468 (482)
Q Consensus 389 ~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~e 468 (482)
++.+ |++.+++.+. .|.. .+|+...|++|+.++++|+|||++|+|+|+++|.|+++||+|+|||||+|+++|
T Consensus 395 ~~~l----~~~~~vv~~~---~~~~-~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e 466 (569)
T PRK08327 395 GEVA----DEYDAIVTEY---PFVP-RQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPE 466 (569)
T ss_pred HHhc----CccceEEecc---HHHH-HhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcH
Confidence 9999 8888888653 2343 456888899999999999999999999999999999999999999999999977
Q ss_pred --HHHHHHcCcccccC
Q 011590 469 --VEVWLSCIIMISSI 482 (482)
Q Consensus 469 --L~T~~r~~l~i~~~ 482 (482)
|||++|||+|+++|
T Consensus 467 ~~l~ta~~~~l~~~iv 482 (569)
T PRK08327 467 AAHWVAERYGLPVLVV 482 (569)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 99999999999875
No 44
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-84 Score=686.32 Aligned_cols=443 Identities=27% Similarity=0.411 Sum_probs=375.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
.++++++|++.|+++||++|||+||+++++|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 4799999999999999999999999999999999975 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~ 167 (482)
+++||++|+.+++|||+|+|+++....+.+. +|+ +||..+|+++|||+.++++++++++.+++|++.|+++|+||||
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~ 162 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVA 162 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 9999999999999999999999988777654 566 5999999999999999999999999999999999999999999
Q ss_pred EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (482)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~ 247 (482)
|+||.|++.++++....... .....+.++++.+++++++|.+||||+|++|.|+ .++.++|.+|||++|+
T Consensus 163 l~iP~dv~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~--~~a~~~l~~lae~~g~ 232 (542)
T PRK08266 163 LEMPWDVFGQRAPVAAAPPL--------RPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGA--AGAGEEIRELAEMLQA 232 (542)
T ss_pred EEeCHhHhhCcccccccccc--------cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCh--hhHHHHHHHHHHHHCC
Confidence 99999999888764211100 0123445677889999999999999999999996 4678999999999999
Q ss_pred cEeeCCCCCCCCCCCCCcccchH-HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEe
Q 011590 248 PFLPTPMGKGLLPDTHPLAATAA-RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLV 326 (482)
Q Consensus 248 pv~~t~~~~g~~~~~hp~~~G~~-~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~ 326 (482)
||++|+.+||+||++||+++|.. .++++++||+||+||+++++. .+++ ..+.++.++||||.|+..++++.+++.+.
T Consensus 233 pv~tt~~~kg~~~~~hp~~~g~~~~~~~~~~aDlvl~lG~~~~~~-~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~i~ 310 (542)
T PRK08266 233 PVVAFRSGRGIVSDRHPLGLNFAAAYELWPQTDVVIGIGSRLELP-TFRW-PWRPDGLKVIRIDIDPTEMRRLKPDVAIV 310 (542)
T ss_pred CEEEeccccccCCCCCccccCCHHHHHHHHhCCEEEEeCCCcCcc-cccc-cccCCCCcEEEEECCHHHhCCcCCCceEe
Confidence 99999999999999999999964 457889999999999999876 3333 22445679999999999987655699999
Q ss_pred ccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhccCCCCcEEEeC
Q 011590 327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFM-TPMRIIRDAILGVGSPAPILVSE 405 (482)
Q Consensus 327 ~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~i~v~e 405 (482)
+|++.+|++|.+.+++.. .....|...+.+.+.++.... ..+++. .+++.|++.+ |++++++.|
T Consensus 311 ~D~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l----p~d~ivv~d 375 (542)
T PRK08266 311 ADAKAGTAALLDALSKAG---SKRPSRRAELRELKAAARQRI--------QAVQPQASYLRAIREAL----PDDGIFVDE 375 (542)
T ss_pred cCHHHHHHHHHHhhhhcc---cCchHHHHHHHHHHHhhhhcc--------ccCCHHHHHHHHHHHhc----CCCcEEEeC
Confidence 999999999999876421 112346555444333221110 124443 3678888888 999999999
Q ss_pred chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
+++...+..++++...|++|+.++++|+|||++|+|+|++++.|+++||+++|||||+|++|||+|++|||+|+++|
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~iv 452 (542)
T PRK08266 376 LSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTV 452 (542)
T ss_pred CcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEE
Confidence 55444444556787888999998889999999999999999999999999999999999999999999999999874
No 45
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-83 Score=681.21 Aligned_cols=441 Identities=22% Similarity=0.307 Sum_probs=371.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++++|++.|+++||+||||+||+.+++|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 4689999999999999999999999999999999965 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
++||++||.+++|||+|+|++++...+++. +|+ +||..+|+++|||++++++++++++.+++|++.|.++|+|||||
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSV 161 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE
Confidence 999999999999999999999888777653 455 69999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+||.|++.++++.+... .+. ....+.++++.+++++++|.+||||+|++|.|++ ++.++|.+||| +|+|
T Consensus 162 ~iP~dv~~~~~~~~~~~-~~~-------~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~~~p 230 (544)
T PRK07064 162 EIPIDIQAAEIELPDDL-APV-------HVAVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-LGFG 230 (544)
T ss_pred EeCHhHhhccccccccc-ccc-------cCCCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-cCCC
Confidence 99999998886532111 000 1122346778999999999999999999999986 56789999999 9999
Q ss_pred EeeCCCCCCCCCCCCCcccch-----HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cc
Q 011590 249 FLPTPMGKGLLPDTHPLAATA-----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PH 322 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~-----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~ 322 (482)
|++|+++||+||++||+++|. ..++++++||+||+||+++++..+.++. +....++||||.|+..++..+ .+
T Consensus 231 v~~t~~~kg~~~~~hp~~~G~~~~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~ 308 (544)
T PRK07064 231 VVTSTQGRGVVPEDHPASLGAFNNSAAVEALYKTCDLLLVVGSRLRGNETLKYS--LALPRPLIRVDADAAADGRGYPND 308 (544)
T ss_pred EEEccCccccCCCCChhhcccCCCCHHHHHHHHhCCEEEEecCCCCcccccccc--cCCCCceEEEeCCHHHhCCcCCCC
Confidence 999999999999999999985 3567889999999999999877654432 333468999999999987554 59
Q ss_pred eeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhccCCCCcE
Q 011590 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNF-MTPMRIIRDAILGVGSPAPI 401 (482)
Q Consensus 323 ~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~i 401 (482)
+.+.+|++.+|++|.+.+++.. .....|.+.+.+.++++.... ..++.+ ..+++.|++.+ |++++
T Consensus 309 ~~i~~d~~~~l~~L~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~l----~~~~i 374 (544)
T PRK07064 309 LFVHGDAARVLARLADRLEGRL---SVDPAFAADLRAAREAAVADL-------RKGLGPYAKLVDALRAAL----PRDGN 374 (544)
T ss_pred ceEecCHHHHHHHHHHhhhhcc---ccchHHHHHHHHHHHhhhhhc-------ccccCcHHHHHHHHHHhC----CCCCE
Confidence 9999999999999998875421 122457655544433322111 122433 35788888887 99999
Q ss_pred EEeCc-hh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 402 LVSEG-AN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 402 ~v~eg-~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
++.|. .+ ..|..+ +++...|++++.+.+ |+|||++|+|||+++|+|+++||+|+|||||+|++|||||++||++|+
T Consensus 375 i~~d~~~~~~~~~~~-~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv 452 (544)
T PRK07064 375 WVRDVTISNSTWGNR-LLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANM 452 (544)
T ss_pred EEeCCccchHHHHHH-hcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCe
Confidence 99884 33 555544 567788888887755 999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 453 ~iv 455 (544)
T PRK07064 453 VIV 455 (544)
T ss_pred EEE
Confidence 875
No 46
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=9.6e-84 Score=684.68 Aligned_cols=450 Identities=19% Similarity=0.281 Sum_probs=366.8
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
+...++++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+|| ++||++|+|||+
T Consensus 12 ~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~ 90 (578)
T PLN02573 12 SSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARG-VGACVVTFTVGG 90 (578)
T ss_pred ccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhC-CCeEEEecCccH
Confidence 4456799999999999999999999999999999999965 57999999999999999999999999 999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC--------cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE--------LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~--------~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
+|+++||++||.|++|||+|+|+.++...+++.+|+ +++.++|+++|||+.++++++++.+.+++|++.|++
T Consensus 91 ~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~ 170 (578)
T PLN02573 91 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALK 170 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888777765322 234689999999999999999999999999999999
Q ss_pred CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590 161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (482)
Q Consensus 161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~ 240 (482)
+| |||||+||.|++.++++.......+. ..........+++..+++++++|.+||||+|++|.|++++++.+++++
T Consensus 171 ~~-gPV~l~iP~Dv~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~ 246 (578)
T PLN02573 171 ES-KPVYISVSCNLAAIPHPTFSREPVPF---FLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVE 246 (578)
T ss_pred cC-CCEEEEeehhhhcCccccccCCCCCc---ccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHH
Confidence 76 99999999999987754210000000 000001111234578999999999999999999999999999999999
Q ss_pred HHHHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
|||++|+||+||++|||+||++||+|+|.. .++++++||+||++|+++++.++.++. .+.+++++||||.|
T Consensus 247 lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~-~~~~~~~~I~id~d 325 (578)
T PLN02573 247 LADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYS-LLLKKEKAIIVQPD 325 (578)
T ss_pred HHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCccccccc-ccCCCCcEEEEeCC
Confidence 999999999999999999999999999853 357889999999999999887665442 24567899999999
Q ss_pred chhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 011590 313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAI 392 (482)
Q Consensus 313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 392 (482)
+..++.. .++.+. |+..+|++|++.++... .....|. .....+.+. .......++++.++++.|++.+
T Consensus 326 ~~~i~~~-~~~~~~-~~~~~l~~L~~~l~~~~---~~~~~~~-~~~~~~~~~------~~~~~~~~i~~~~~~~~l~~~l 393 (578)
T PLN02573 326 RVTIGNG-PAFGCV-LMKDFLEALAKRVKKNT---TAYENYK-RIFVPEGEP------LKSEPGEPLRVNVLFKHIQKML 393 (578)
T ss_pred EEEECCc-ceECCc-CHHHHHHHHHHHhhccc---ccccccc-ccccCcccC------CCCCCCCccCHHHHHHHHHHhc
Confidence 9988653 245554 89999999998875421 0111121 100000000 0011234688889999999988
Q ss_pred hccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590 393 LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472 (482)
Q Consensus 393 ~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~ 472 (482)
++++|++.|+++++ +...++....++.|+.++++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||+
T Consensus 394 ----~~d~iiv~D~G~~~-~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta 468 (578)
T PLN02573 394 ----SGDTAVIAETGDSW-FNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTM 468 (578)
T ss_pred ----CCCCEEEEecccch-hhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHH
Confidence 99999999965553 3334456666778888889999999999999999999999999999999999999999999
Q ss_pred HHcCcccccC
Q 011590 473 LSCIIMISSI 482 (482)
Q Consensus 473 ~r~~l~i~~~ 482 (482)
+||++|+++|
T Consensus 469 ~r~~lpvv~v 478 (578)
T PLN02573 469 IRCGQKSIIF 478 (578)
T ss_pred HHcCCCCEEE
Confidence 9999999875
No 47
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=9.9e-83 Score=673.60 Aligned_cols=442 Identities=19% Similarity=0.224 Sum_probs=376.0
Q ss_pred CCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 9 ~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
+..+.++++++|++.|+++||+|+||+||+++++|++++.+ +|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus 7 ~~~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~-~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~ 85 (530)
T PRK07092 7 PAAAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD-DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGV 85 (530)
T ss_pred CccccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh-cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchH
Confidence 44557899999999999999999999999999999999964 69999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~ 167 (482)
+|+++||++|+.+++|||+|+|+++....+++.+|+ +||..+|+++|||+.++++++++++.+++|++.|+++|+||||
T Consensus 86 ~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~ 165 (530)
T PRK07092 86 GNAMGNLFTAFKNHTPLVITAGQQARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVF 165 (530)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEE
Confidence 999999999999999999999999999888888755 7999999999999999999999999999999999999999999
Q ss_pred EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (482)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~ 247 (482)
|+||.|++.++++.. .+. .....+.++++.+++++++|.+||||+|++|.|++++++.++|.+|||++|+
T Consensus 166 l~iP~d~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~ 235 (530)
T PRK07092 166 VSIPYDDWDQPAEPL----PAR------TVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRA 235 (530)
T ss_pred EEccHHHhhCccccc----ccC------CCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCC
Confidence 999999998886531 000 0112335677889999999999999999999999988999999999999999
Q ss_pred cEeeCCC-CCCCCCCCCCcccchH------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC
Q 011590 248 PFLPTPM-GKGLLPDTHPLAATAA------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK 320 (482)
Q Consensus 248 pv~~t~~-~~g~~~~~hp~~~G~~------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~ 320 (482)
||++|++ +||+||++||+|+|.. .++++++||+||+||+++.++..+++...|.++.++||||.|+..++.+.
T Consensus 236 pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~ 315 (530)
T PRK07092 236 PVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAP 315 (530)
T ss_pred cEEEecCCCcCcCCCCCccccCcCCccHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcCCC
Confidence 9998876 7999999999999853 45788999999999998654434444444666789999999999886665
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
.++.+.+|+..+|++|++.++... +..|.. ++... ....+..++++..+++.|++.+ |+++
T Consensus 316 ~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~~~-----~~~~~-----~~~~~~~~l~~~~~~~~l~~~l----~~~~ 376 (530)
T PRK07092 316 MGDAIVGDIRLALRDLLALLPPSA-----RPAPPA-----RPMPP-----PAPAPGEPLSVAFVLQTLAALR----PADA 376 (530)
T ss_pred CCCcccCCHHHHHHHHHHhhcccc-----ccchhh-----hhccc-----cccCCCCCcCHHHHHHHHHHhC----CCCe
Confidence 689999999999999999886421 111110 00000 0011235688888999999888 9999
Q ss_pred EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
+++.|++ +..|. ..+|+...|++|+.+. +|+|||++|+|+|++++.|+++||+++|||||+|+.|||+|++||++|+
T Consensus 377 ivv~d~g~~~~~~-~~~~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~ 454 (530)
T PRK07092 377 IVVEEAPSTRPAM-QEHLPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPV 454 (530)
T ss_pred EEEeCCCccHHHH-HHhcCcCCCCceEccC-CCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCc
Confidence 9998854 45555 4456877888988764 5999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 455 ~~v 457 (530)
T PRK07092 455 TFV 457 (530)
T ss_pred EEE
Confidence 764
No 48
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=2.4e-82 Score=669.03 Aligned_cols=424 Identities=19% Similarity=0.213 Sum_probs=355.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
|+++|+|++.|+++||+||||+||+++++|++++.+ .+|++|.+|||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 589999999999999999999999999999999975 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+||++||.+++|||+|+|+.+....+++.+|++||..+|+++|||++++++++++++.+++||+.|+++|+|||||+||.
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
|++.++++.+.. ..+ ....+.++++.+++++++|.+||||+|++|.|++++++.+++.+|||++|+||+++
T Consensus 161 Dv~~~~~~~~~~-~~~--------~~~~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~ 231 (514)
T PRK07586 161 DVAWSEGGPPAP-PPP--------APAPAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAE 231 (514)
T ss_pred chhccccccccc-cCC--------CCCCCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEec
Confidence 999877653211 000 11233567889999999999999999999999999999999999999999999986
Q ss_pred C------CCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcc--cccCCCC-CCCCCCcEEEEeCCchhhcccCCce
Q 011590 253 P------MGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWL--LHFGEPP-KWSKDVKFVLVDVCKEEIELRKPHL 323 (482)
Q Consensus 253 ~------~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~--~~~g~~~-~~~~~~~ii~id~d~~~~~~~~~~~ 323 (482)
. ++||++|++|+.+.+...+.++++||+||+||+++... ...+... .++.+.++++++.
T Consensus 232 ~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 299 (514)
T PRK07586 232 TFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAG------------ 299 (514)
T ss_pred ccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECC------------
Confidence 5 59999999998888877788999999999999986321 1111111 1222334444322
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
..+|++.+|++|.+.++... ... ...+. . .......++++.++++.|++.+ |+++|++
T Consensus 300 -~~~d~~~~l~~L~~~l~~~~----~~~----~~~~~---~------~~~~~~~~i~~~~~~~~l~~~l----~~~~ivv 357 (514)
T PRK07586 300 -PGEDAAAALEALADALGAKP----AAP----PLAAP---A------RPPLPTGALTPEAIAQVIAALL----PENAIVV 357 (514)
T ss_pred -CcccHHHHHHHHHHhhcccc----cch----hhhhc---c------ccCCCCCCcCHHHHHHHHHHhC----CCCeEEE
Confidence 13799999999998775321 010 00000 0 0011235688888999999988 9999999
Q ss_pred eCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.|++ +..|. ..+++...|++|+.+.+ |+|||++|+|||+++|.|+++||+|+|||||+|++|||||++|||+|+++|
T Consensus 358 ~d~g~~~~~~-~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~iv 435 (514)
T PRK07586 358 DESITSGRGF-FPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTV 435 (514)
T ss_pred eCCCcCHHHH-HHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEE
Confidence 9954 45555 45567788889997765 999999999999999999999999999999999999999999999998764
No 49
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-82 Score=666.44 Aligned_cols=425 Identities=19% Similarity=0.227 Sum_probs=354.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
.+++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.+|||++|+||||||+|+||||+||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 46799999999999999999999999999999999965 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++||.|++|||+|+|+.+....+.+.+|+.|+..+++++|||+.++++++++++.+++|++.|.++|+|||||+|
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++.++++.+. ...+ ....+.++++.+++++++|.+||||+|++|+|+.++++.+++.+|||++|+||+
T Consensus 163 P~Dv~~~~~~~~~-~~~~--------~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~ 233 (518)
T PRK12474 163 PADVAWNEAAYAA-QPLR--------GIGPAPVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLY 233 (518)
T ss_pred chhhhcccccCCc-CCCC--------CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEE
Confidence 9999987764211 0000 011234667899999999999999999999999999999999999999999999
Q ss_pred eC------CCCCCCCCC-CCCcccchHHHHhhhcCCEEEEecCccCcc--cccC-CCCCCCCCCcEEEEeCCchhhcccC
Q 011590 251 PT------PMGKGLLPD-THPLAATAARSLAIGQCDVALVVGARLNWL--LHFG-EPPKWSKDVKFVLVDVCKEEIELRK 320 (482)
Q Consensus 251 ~t------~~~~g~~~~-~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~--~~~g-~~~~~~~~~~ii~id~d~~~~~~~~ 320 (482)
+| +++||.||+ +||++ +....+++++||+||+||+++++. ...+ +...+.+..++++++..
T Consensus 234 ~t~~~~~~~~gkg~~~~~~~~~~-~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------- 304 (518)
T PRK12474 234 CDTFAPRIERGAGRVPIERIPYF-HEQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQP-------- 304 (518)
T ss_pred EecCcccccCCCCCCCCcccccc-hHHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCC--------
Confidence 75 368999995 66776 444557899999999999996421 1111 11123445678877642
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
.+|++.+|++|.+.++... .|... . ... ....+..++++.++++.|++.+ ++++
T Consensus 305 -----~~d~~~~l~~L~~~l~~~~-------~~~~~---~-~~~------~~~~~~~~i~~~~~~~~l~~~l----~~d~ 358 (518)
T PRK12474 305 -----DEDLAQALQDLADAVDAPA-------EPAAR---T-PLA------LPALPKGALNSLGVAQLIAHRT----PDQA 358 (518)
T ss_pred -----CcCHHHHHHHHHHhccccc-------ccccc---c-ccc------ccCCCCCCcCHHHHHHHHHHHC----CCCe
Confidence 1699999999988765320 01000 0 000 0011234688888999999988 9999
Q ss_pred EEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
|++.|++ +..|. ..+|+...|++|+.+. +|+|||++|+|||+++|+|+|+||+|+|||||+|++|||||++|||+|+
T Consensus 359 iv~~d~g~~~~~~-~~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv 436 (518)
T PRK12474 359 IYADEALTSGLFF-DMSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDV 436 (518)
T ss_pred EEEECCCcCHHHH-HHhhcccCCCCEEccC-CCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCc
Confidence 9999954 45554 4567878888998775 4999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 437 ~ii 439 (518)
T PRK12474 437 TVV 439 (518)
T ss_pred EEE
Confidence 875
No 50
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=6e-82 Score=665.76 Aligned_cols=434 Identities=18% Similarity=0.203 Sum_probs=356.9
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCC-CcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~-i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
+.+|+|++.|+++||++|||+||+++++|++++.+.+ |++|.+|||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 5789999999999999999999999999999998765 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCC---CC--c-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDF---QE--L-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~---q~--~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~ 167 (482)
||++||.+++|||+|+|+.++...+++.+ |. + ||..+|+++|||+.++.+++++++.+++|++.|+++ |||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~-~gPv~ 159 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSAREL-SRPVY 159 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHC-CCCEE
Confidence 99999999999999999999888888764 43 6 488999999999999999999999999999999984 59999
Q ss_pred EEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590 168 LDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (482)
Q Consensus 168 l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~ 247 (482)
|+||.|++.++++... ..+. ....+.+.+..+++++++|++||||+|++|+|+.++++.+++++|||++|+
T Consensus 160 i~iP~Dv~~~~~~~~~--~~~~-------~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~ 230 (535)
T TIGR03394 160 LEIPRDMVNAEVEPVP--DDPA-------WPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGV 230 (535)
T ss_pred EEechhhccCccCCCC--CCCC-------CCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCC
Confidence 9999999988876321 0110 111112234678999999999999999999999999999999999999999
Q ss_pred cEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590 248 PFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR 319 (482)
Q Consensus 248 pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~ 319 (482)
||+||++|||+||++||+|+|. ..++++++||+||+||+++++++.+.. ..+.++.++||||.|+..++..
T Consensus 231 pv~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~-~~~~~~~~~I~id~~~~~~~~~ 309 (535)
T TIGR03394 231 PVVTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVS-QRKIDLRRTIHAFDRAVTLGYH 309 (535)
T ss_pred CEEEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccc-cccCCCCcEEEEeCCEEEECCe
Confidence 9999999999999999999983 356789999999999999987644222 2234567999999999888665
Q ss_pred C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590 320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 398 (482)
. +++.+ +|+..+|++|++.+... ..+.|.+... ++. .....+..++++.++++.|++.+ ++
T Consensus 310 ~~~~~~i-~d~~~~L~~l~~~~~~~-----~~~~~~~~~~----~~~----~~~~~~~~~i~p~~~~~~l~~~l----~~ 371 (535)
T TIGR03394 310 VYADIPL-AGLVDALLALLCGLPPS-----DRTTRGKGPH----AYP----RGLQADAEPIAPMDIARAVNDRF----AR 371 (535)
T ss_pred eECCccH-HHHHHHHHHhhhccccc-----cccccccccc----ccc----cccCCCCCCcCHHHHHHHHHHHh----CC
Confidence 4 47888 78888888888765321 0111111100 000 00011234688888999999999 76
Q ss_pred C--cEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 399 A--PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 399 ~--~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
+ .+++.|+++..++...+ .+++|+.++++|+|||++|+|||+++|.| +++|+++|||||+|++|||+|++|||
T Consensus 372 ~~~~ii~~D~G~~~~~~~~~----~~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~ 446 (535)
T TIGR03394 372 HGQMPLAADIGDCLFTAMDM----DDAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLG 446 (535)
T ss_pred CCCEEEEEccCHHHHHHHhc----CCCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcC
Confidence 5 46788855445444332 36789988899999999999999999986 55688999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
+|+++|
T Consensus 447 lpv~~v 452 (535)
T TIGR03394 447 IDPIVI 452 (535)
T ss_pred CCcEEE
Confidence 999875
No 51
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=6.8e-82 Score=668.06 Aligned_cols=432 Identities=19% Similarity=0.235 Sum_probs=357.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
.|++|+|++.|+++||++|||+||+.+++|++++.+ ++|++|.+|||++|+|||+||+|+|| ++||++|+|||++|++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~ 79 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKG-AAALLTTFGVGELSAI 79 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHh
Confidence 378999999999999999999999999999999965 58999999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCccc----------CCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~ 162 (482)
+||++||.|++|||+|+|+.++.. .+.+.+|++ ..+++++|||+..+ +++++++.+++|++.|.+++
T Consensus 80 ~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~ 156 (539)
T TIGR03393 80 NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHF--YRMAAEVTVAQAVL-TEQNATAEIDRVITTALRER 156 (539)
T ss_pred hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHH--HHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcC
Confidence 999999999999999999988743 334455653 67999999999866 78999999999999999875
Q ss_pred CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCC--CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGI--VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (482)
Q Consensus 163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~ 240 (482)
|||||+||.|++.++++.+.. ... ...+.+.. ++..+++++++|.+||||+|++|.|++++++.+++.+
T Consensus 157 -gPv~l~iP~Dv~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~ 227 (539)
T TIGR03393 157 -RPGYLMLPVDVAAKAVTPPVN-PLV-------THKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQK 227 (539)
T ss_pred -CCEEEEecccccCCccCCCCc-ccC-------cCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHH
Confidence 999999999999988764211 000 00111111 1235899999999999999999999998999999999
Q ss_pred HHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
|||++++||++|++|||+||++||+|+|. ..++++++||+||+||+++++..+.++...|.+ .++|+||.|
T Consensus 228 lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~-~~~I~id~~ 306 (539)
T TIGR03393 228 WVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTP-EQTIDVQPH 306 (539)
T ss_pred HHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCc-ccEEEEcCC
Confidence 99999999999999999999999999984 355789999999999999987665444323443 689999999
Q ss_pred chhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 011590 313 KEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDA 391 (482)
Q Consensus 313 ~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (482)
+..++... +++.+ +|+..+|++|++.++.. |.+. ......+ ...+..++++..+++.|++.
T Consensus 307 ~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~~~---------~~~~-~~~~~~~-------~~~~~~~l~~~~~~~~l~~~ 368 (539)
T TIGR03393 307 AARVGNVWFTGIPM-NDAIETLVELCEHAGLM---------WSSS-GAIPFPQ-------PDESRSALSQENFWQTLQTF 368 (539)
T ss_pred eEEECceEeCCcCH-HHHHHHHHHHhhhcccc---------cccc-cccCcCC-------CCCCCCccCHHHHHHHHHHh
Confidence 98886543 47777 99999999998876321 3211 0000000 01122358888899999998
Q ss_pred HhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHH
Q 011590 392 ILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471 (482)
Q Consensus 392 l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T 471 (482)
+ |++++++.|+++..++.+ +++...+++++.+.++|+|||++|+|||+++|.|+|+||+|+|||||+|++|||||
T Consensus 369 l----~~~~iiv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~T 443 (539)
T TIGR03393 369 L----RPGDIILADQGTSAFGAA-DLRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGS 443 (539)
T ss_pred c----CCCCEEEEccCchhhhhh-hccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHH
Confidence 8 999999998544445544 46777788999888999999999999999999999999999999999999999999
Q ss_pred HHHcCcccccC
Q 011590 472 WLSCIIMISSI 482 (482)
Q Consensus 472 ~~r~~l~i~~~ 482 (482)
++|||+||++|
T Consensus 444 a~~~~lpi~~v 454 (539)
T TIGR03393 444 MLRDKQHPIIL 454 (539)
T ss_pred HHHcCCCCEEE
Confidence 99999999875
No 52
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=4.8e-81 Score=594.93 Aligned_cols=459 Identities=25% Similarity=0.383 Sum_probs=392.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
.++|+|++.+.+.++||++|||.||+.++++.+++.+ +.+++|..|||++|++||.||+|.+||||||++|||||++|.
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv 169 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV 169 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccc
Confidence 6799999999999999999999999999999999986 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
+++|+.|++|++||++++||.+++.+|..+||+.|.+.+-|.+|||.+.+.+.++++.-+++||..|.++|||||.+++|
T Consensus 170 vtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlP 249 (675)
T KOG4166|consen 170 VTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLP 249 (675)
T ss_pred cchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhccccChh--HHHHHHHhhhhhcccccCCCCCH---HHHHHHHHHHHhCCCCEEEEcCCcccc-ccHHHHHHHHHHh
Q 011590 172 TDVLHQTISVS--EAEKLLKEAESAKETVTQGGIVN---SDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVEST 245 (482)
Q Consensus 172 ~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~a~rpvil~G~g~~~~-~~~~~l~~lae~~ 245 (482)
.|+..+..-++ ....+|.+ .....-...+++ ..+++++++|+.|||||+++|.|+.++ +.-..|.+|.|++
T Consensus 250 KDvta~~l~~pip~~~~lPsn---~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~ 326 (675)
T KOG4166|consen 250 KDVTAQLLIPPIPQAMRLPSN---AYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERT 326 (675)
T ss_pred HHHHHHHhcCCchhhhcCCch---hhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhh
Confidence 99976653221 11112110 011111112232 579999999999999999999999876 5567899999999
Q ss_pred CCcEeeCCCCCCCCCCCCCcccc---h----HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCc---------EEEE
Q 011590 246 GIPFLPTPMGKGLLPDTHPLAAT---A----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK---------FVLV 309 (482)
Q Consensus 246 g~pv~~t~~~~g~~~~~hp~~~G---~----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~---------ii~i 309 (482)
+|||.+|.+|-|.+|+++++.+- . ++|+++++|||||++|.||++.- .|+...|.+.++ |||+
T Consensus 327 qIPVtttL~GLGs~d~~d~lSLhMLGMHG~~yAN~Avq~aDLilA~GvRFDDRV-TGn~s~FAp~Ar~aaae~rggIiHf 405 (675)
T KOG4166|consen 327 QIPVTTTLMGLGSYDCDDELSLHMLGMHGTVYANYAVQHADLILAFGVRFDDRV-TGNLSAFAPRARRAAAEGRGGIIHF 405 (675)
T ss_pred cCcceehhhcccCcCCCCchhhhhhcccccceehhhhhccceeEEecceecccc-ccchhhhChhhhhhhhcccCceEEE
Confidence 99999999999999999998753 2 57899999999999999999874 677888888888 9999
Q ss_pred eCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHH
Q 011590 310 DVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRII 388 (482)
Q Consensus 310 d~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 388 (482)
|++|.++++.. +.+.++||+...|..+...++.... ..+..|...++.++++..... ....++..+.+.++++.|
T Consensus 406 dispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~~~--~~r~dW~~qin~wK~~fP~sf--~~~tpGe~ikPQ~vIk~L 481 (675)
T KOG4166|consen 406 DISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNRAE--ELRLDWRNQINVWKQKFPLSF--KEETPGEAIKPQYVIKVL 481 (675)
T ss_pred ecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcccc--hhhhhHHHHHHHHHHhCCeee--eccCCccccChHHHHHHH
Confidence 99999998764 6899999999999999887776533 245679999888877753211 112345567888899988
Q ss_pred HHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChH
Q 011590 389 RDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAV 467 (482)
Q Consensus 389 ~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~ 467 (482)
.++-++. ....|+.+. |.+.+|.+.+ |.-.+|++|+++++.|+||||||+||||++|+|+..||-|.||+||.||.|
T Consensus 482 dk~t~d~-~~kviitTGVGqHQMWAAqf-y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~Mt~~ 559 (675)
T KOG4166|consen 482 DKLTDDT-GRKVIITTGVGQHQMWAAQF-YNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIMTVQ 559 (675)
T ss_pred HHhccCc-CceEEEeccccHHHHHHHHH-hcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeeeehH
Confidence 8776433 223344443 7789988765 477889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccc
Q 011590 468 EVEVWLSCIIMISS 481 (482)
Q Consensus 468 eL~T~~r~~l~i~~ 481 (482)
||+|+++.++|+.+
T Consensus 560 ELat~rq~~~PVKi 573 (675)
T KOG4166|consen 560 ELATIRQENLPVKI 573 (675)
T ss_pred hhhhhhhcCCceEE
Confidence 99999999999854
No 53
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=8.5e-79 Score=649.53 Aligned_cols=447 Identities=14% Similarity=0.125 Sum_probs=356.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
..++++++|++.|+++||++|||+||+++++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 7 ~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N 86 (568)
T PRK07449 7 FNTLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVAN 86 (568)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHh
Confidence 45899999999999999999999999999999999965 57999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCc--CcHHHHHHHHHHH---hhcCCCce
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI--TEVPKCVAQVLER---AVSGRPGG 165 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~--~~~~~~l~~A~~~---a~~~~~gP 165 (482)
+++||++||.+++|||+|+|+++....+++.+|++||.++++++|++..+..+. +.+...++++++. |.++++||
T Consensus 87 ~l~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GP 166 (568)
T PRK07449 87 LYPAVIEAGLTGVPLIVLTADRPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGP 166 (568)
T ss_pred hhHHHHHHhhcCCcEEEEECCCCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999999999777766544 3344444544444 77889999
Q ss_pred EEEEcCcchhccccC-hhHHHHH-HHhhhhhccc---ccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590 166 CYLDLPTDVLHQTIS-VSEAEKL-LKEAESAKET---VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (482)
Q Consensus 166 v~l~iP~dv~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~ 240 (482)
|||+||.|++..+.+ +...... .+.. .... ...+.+++..+++++++|.+ |||+|++|.|+++++ +++.+
T Consensus 167 V~i~iP~Dv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~--~~l~~ 241 (568)
T PRK07449 167 VHINCPFREPLYPDDDDDTGSPWLAPLG--DWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEG--QAIAA 241 (568)
T ss_pred EEEeCCCCCCCCCCCccccccccccccc--ccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHH--HHHHH
Confidence 999999998654432 1100000 0000 0000 00123455678999999998 999999999997544 89999
Q ss_pred HHHHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 241 LVESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
|||++|+||++|+.+|+.+|++||+++|.. .++++++||+||+||++++++.+.++.. ....++||||.|
T Consensus 242 lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~--~~~~~~i~id~d 319 (568)
T PRK07449 242 LAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLA--DCEPEYWVVDPG 319 (568)
T ss_pred HHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHh--cCCCCEEEECCC
Confidence 999999999999999999999999999853 2357889999999999986544333321 223499999999
Q ss_pred chhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 011590 313 KEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDA 391 (482)
Q Consensus 313 ~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (482)
+..++..+ +++.+.+|++.+|++ ... . ....|.+.+.+.++++........ ...++++..+++.|++.
T Consensus 320 ~~~~~~~~~~~~~i~~d~~~~l~~-~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~l~~~ 388 (568)
T PRK07449 320 PGRLDPAHHATRRLTASVATWLEA-HPA---E-----KRKPWLQEWQALNEKAREAVREQL--AEDTFTEAKVAAALADL 388 (568)
T ss_pred CCcCCCCCCceEEEEEcHHHHHHh-ccc---c-----cchHHHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHh
Confidence 99987554 589999999999998 221 1 123576665554444432222111 23568888899999998
Q ss_pred HhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHH
Q 011590 392 ILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470 (482)
Q Consensus 392 l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~ 470 (482)
+ |++++++.+. .+..++ ..++....+++++.+.++++|||++|+|||+++| |+++||+|+|||||+|++||||
T Consensus 389 l----~~~~iv~~~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~ 462 (568)
T PRK07449 389 L----PEGGQLFVGNSLPVRDV-DAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLL 462 (568)
T ss_pred C----CCCCeEEEECcHHHHHH-HHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHH
Confidence 8 9889887764 444444 4455666678888888889999999999999999 8999999999999999999999
Q ss_pred HHHHcCcccccC
Q 011590 471 VWLSCIIMISSI 482 (482)
Q Consensus 471 T~~r~~l~i~~~ 482 (482)
|++||++|+++|
T Consensus 463 Ta~r~~l~i~iv 474 (568)
T PRK07449 463 LLKQVPAPLTIV 474 (568)
T ss_pred hhcccCCCeEEE
Confidence 999999999865
No 54
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=4e-74 Score=592.47 Aligned_cols=412 Identities=16% Similarity=0.166 Sum_probs=341.2
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG 94 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a 94 (482)
.+++|++.|+++||+||||+||+++.+|++++.+ ++|++|.++||++|+|||+||+|+||||+||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 4799999999999999999999999999999964 689999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc------HHHHHHHHHHHhhcCCCceEEE
Q 011590 95 LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~------~~~~l~~A~~~a~~~~~gPv~l 168 (482)
|++|+.+++|||+|+|++++...+++.+|++||.++|+++|||+.+++++++ +++.+++|++.|.++|+|||||
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l 161 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHI 161 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 9999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred EcCcchhccccChhH-HHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCC
Q 011590 169 DLPTDVLHQTISVSE-AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGI 247 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~ 247 (482)
+||.|++..+.+... ...... .+........+.++++.+++++++|.+||||+|++|.|+.++ +.++|.+|||++|+
T Consensus 162 ~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~lae~~~~ 239 (432)
T TIGR00173 162 NVPFREPLYPDPLLQPLQPWLR-SGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAALAEALGW 239 (432)
T ss_pred eCCCCCCCCCCCcccccccccc-cccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHHHHHhCCC
Confidence 999999765542110 000000 000000111223567789999999999999999999999876 88999999999999
Q ss_pred cEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590 248 PFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR 319 (482)
Q Consensus 248 pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~ 319 (482)
||++|+++||.+ ++| +++|.. .++++ ++|+||+||++++++...++. +.++.++||||.|+..++..
T Consensus 240 PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~~--~~~~~~~i~vd~d~~~~~~~ 314 (432)
T TIGR00173 240 PLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQWL--ARQPAEYWVVDPDPGWLDPS 314 (432)
T ss_pred eEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHHH--hCCCCcEEEECCCCCccCCC
Confidence 999999999999 789 999854 23456 999999999999876544442 34567999999999998765
Q ss_pred C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590 320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 398 (482)
+ +++.+++|++.+|++|.+.++.. ...|.+.+.+..+++........ ++.++++.++++.|++.+ |+
T Consensus 315 ~~~~~~i~~D~~~~l~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~p~~~~~~l~~~l----p~ 382 (432)
T TIGR00173 315 HHATTRLEASPAEFAEALAGLLKNP------DAAWLDRWLEAEAKAREALREVL--AEEPLSELSLARALSQLL----PE 382 (432)
T ss_pred CCceEEEEECHHHHHHHhhhccCCC------ChHHHHHHHHHHHHHHHHHHHHh--ccCCccHHHHHHHHHHhC----CC
Confidence 4 49999999999999998887531 23466555444444332222211 234688889999999998 99
Q ss_pred CcEEEeCchhHHHHHHHhhhcC-CCCeeecCCCCCcccchHHHHHHHhh
Q 011590 399 APILVSEGANTMDVGRAVLVQT-EPRCRLDAGTWGTMGVGLGYCIAAAI 446 (482)
Q Consensus 399 ~~i~v~eg~~~~~~~~~~~~~~-~~~~~~~~~~~g~mG~~l~~AiGaal 446 (482)
|.+++.|++++..+...+++.. .|++++++.++|+|||++|+|||+++
T Consensus 383 d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 383 GAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred CCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 9999999665554555667775 78999999999999999999999986
No 55
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.4e-72 Score=554.06 Aligned_cols=440 Identities=22% Similarity=0.323 Sum_probs=360.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
.+++++++|+++|++.||+++||+||+.++.|+|.+.+ ++++||.+.||.+|+||||||+|..| .+++++|.|+|...
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~G-i~alvTTfGVGELS 80 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNG-ISALVTTFGVGELS 80 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcC-ceEEEEecccchhh
Confidence 56899999999999999999999999999999999975 68999999999999999999999999 89999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCC-------CCc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~ 162 (482)
+++||+.+|++++|||+|+|.+++..+.++.+ .+| .+..|+++++.....+++.++++..++|+++.++..+
T Consensus 81 A~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~ 160 (557)
T COG3961 81 ALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQR 160 (557)
T ss_pred hhcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998775544321 123 3678999999999999999989999999999999876
Q ss_pred CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (482)
Q Consensus 163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la 242 (482)
.||||.+|.|+.+.+++.+ + .|... ......+....+.++.++++|+++|||+||+|..+.+.+..+++.+|+
T Consensus 161 -RPvYI~lP~dva~~~~~~p-~--~Pl~~---~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~ 233 (557)
T COG3961 161 -RPVYIGLPADVADLPIEAP-L--TPLDL---QLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLI 233 (557)
T ss_pred -CCeEEEcchHHhcCcCCCC-C--Ccccc---ccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHH
Confidence 8999999999999998865 1 11100 000111122235688889999999999999999999999999999999
Q ss_pred HHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590 243 ESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314 (482)
Q Consensus 243 e~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~ 314 (482)
+++++|++++++|||+|+|+||.|+|.+ ..+.++.||+||.+|+.++++++.++...++ ..++|+++.+..
T Consensus 234 ~~t~~p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~-~~~~i~~~~~~v 312 (557)
T COG3961 234 NATGFPVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYK-PANIIEIHPDSV 312 (557)
T ss_pred HhcCCCeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecC-cccEEEeccCee
Confidence 9999999999999999999999999964 4578899999999999999998877665554 478999999887
Q ss_pred hhc-ccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 011590 315 EIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL 393 (482)
Q Consensus 315 ~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 393 (482)
.+. .....+ ..+.+|++|+..+..+....+.. .+.. +.. +......+.+++..++++.+.+++
T Consensus 313 ~I~~~~f~~l----~m~~~L~~L~~~i~~~~~~~~~~-~~~~------~~p----~~~~~~~~~pLtq~~~w~~~~~fl- 376 (557)
T COG3961 313 KIKDAVFTNL----SMKDALQELAKKIDKRNLSAPPV-AYPA------RTP----PTPYPPANEPLTQEWLWNTVQNFL- 376 (557)
T ss_pred EecccccCCe----eHHHHHHHHHHHhhhcccCCCCc-cCCC------CCC----CCCCCCCCCcccHHHHHHHHHhhC-
Confidence 663 223333 34788999988887654221100 0000 000 001223456899999999999999
Q ss_pred ccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590 394 GVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472 (482)
Q Consensus 394 ~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~ 472 (482)
.++++++.| |.+.+...+..||. .-.++.+..||++||++|+|+|+++|.|||+||+|+||||||||.||+.|+
T Consensus 377 ---~p~dviiaetGtS~FG~~~~~lP~--~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStm 451 (557)
T COG3961 377 ---KPGDVIIAETGTSFFGALDIRLPK--GATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTM 451 (557)
T ss_pred ---CCCCEEEEccccccccceeeecCC--CCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHH
Confidence 888888888 66555554443443 347888889999999999999999999999999999999999999999999
Q ss_pred HHcCccccc
Q 011590 473 LSCIIMISS 481 (482)
Q Consensus 473 ~r~~l~i~~ 481 (482)
+|++|+.++
T Consensus 452 iR~gl~p~i 460 (557)
T COG3961 452 IRWGLKPII 460 (557)
T ss_pred HHcCCCcEE
Confidence 999998654
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=4.4e-71 Score=641.67 Aligned_cols=456 Identities=16% Similarity=0.154 Sum_probs=356.6
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
..++++|++.|+++||+|+||+||+++++|++++.+ .++++|.++||++|+|||+||+|+||||+||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 559999999999999999999999999999999965 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcH------HHHHHHHHHHhhcCCCceE
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEV------PKCVAQVLERAVSGRPGGC 166 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~------~~~l~~A~~~a~~~~~gPv 166 (482)
+|+++|+.+++|||+|||++++...+++.+|++||..+|+++|||+.++.+++++ .+.+++|++.|+++|||||
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPV 460 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPV 460 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999984 5899999999999999999
Q ss_pred EEEcCcch----hccccChhH---HHH-----HHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcccccc
Q 011590 167 YLDLPTDV----LHQTISVSE---AEK-----LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234 (482)
Q Consensus 167 ~l~iP~dv----~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~ 234 (482)
||+||.|. +..+.+... +.. .+............+.++++.+++++++|.+||||+|++|+|+..+++
T Consensus 461 hL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG~G~~~~~a 540 (1655)
T PLN02980 461 HINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIGAIHTEDDI 540 (1655)
T ss_pred EEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEcCCCchHHH
Confidence 99999653 221110000 000 000000000001112345678999999999999999999999876555
Q ss_pred HHHHHHHHHHhCCcEeeCCCC-C------CCCCC--CCCcccchHHH-------HhhhcCCEEEEecCccCcccccCCCC
Q 011590 235 EGELKKLVESTGIPFLPTPMG-K------GLLPD--THPLAATAARS-------LAIGQCDVALVVGARLNWLLHFGEPP 298 (482)
Q Consensus 235 ~~~l~~lae~~g~pv~~t~~~-~------g~~~~--~hp~~~G~~~~-------~~l~~aDlvl~iG~~~~~~~~~g~~~ 298 (482)
. .+.+|||++|+||++|+++ + |.||+ +||+++|..+. ..++++|+||+||++++.....++..
T Consensus 541 ~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~rl~s~~~t~~~~ 619 (1655)
T PLN02980 541 W-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITSKRVSQMLE 619 (1655)
T ss_pred H-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCccccHHHHHHHH
Confidence 5 4699999999999999975 4 99999 89999996542 34678999999999997432222222
Q ss_pred CCCCCCcEEEEeCCchhhcccCC-ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCC
Q 011590 299 KWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVV 377 (482)
Q Consensus 299 ~~~~~~~ii~id~d~~~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 377 (482)
.+.+ .++||||.|+..++..++ ++.+++|+..+++.|.+..... ....|.+.+.+.+.++........ ....
T Consensus 620 ~~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~-~~~~ 692 (1655)
T PLN02980 620 KCFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLKAQFPR-----RRSKWHGHLQALDGMVAQEISFQI-HAES 692 (1655)
T ss_pred hCCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhhccCcc-----hhHHHHHHHHHHHHHHHHHHHhhh-hcCC
Confidence 2222 369999999999876554 8999999999999987643211 123576655544443322211110 1122
Q ss_pred CCCcccHHHHHHHHHhccCCCCcEEEeCchhH-----HHHHH----------HhhhcCCCCeeec-CCCCCcccc--hHH
Q 011590 378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANT-----MDVGR----------AVLVQTEPRCRLD-AGTWGTMGV--GLG 439 (482)
Q Consensus 378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~-----~~~~~----------~~~~~~~~~~~~~-~~~~g~mG~--~l~ 439 (482)
++++.++++.|++.+ |+|.+++.|+++. .|..+ ++++...|++++. ++++|+||| ++|
T Consensus 693 ~l~~~~v~~~L~~~L----p~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lp 768 (1655)
T PLN02980 693 SLTEPYVAHVISEAL----TSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLS 768 (1655)
T ss_pred CcchHHHHHHHHHhC----CCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHH
Confidence 577788899998888 9999888875432 22211 1223456777875 678999999 599
Q ss_pred HHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHc--CcccccC
Q 011590 440 YCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC--IIMISSI 482 (482)
Q Consensus 440 ~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~--~l~i~~~ 482 (482)
+|||++++. +++|++|+|||||+|++|||+|++|+ ++||++|
T Consensus 769 aAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iV 812 (1655)
T PLN02980 769 TAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTIL 812 (1655)
T ss_pred HHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEE
Confidence 999999998 89999999999999999999999995 9999765
No 57
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=1.3e-66 Score=483.59 Aligned_cols=452 Identities=28% Similarity=0.401 Sum_probs=393.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhH
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCV 89 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~ 89 (482)
.+|+.-|+-+..|++.||+..||+||..+.+++.+|+.. +|+.|..||-.+|.+||+||.|++ |..|+|+.||||.-+
T Consensus 2 akmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagt 81 (592)
T COG3960 2 AKMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT 81 (592)
T ss_pred cchhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCcc
Confidence 567888999999999999999999999999999999865 599999999999999999999964 789999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
.+++|++.|++|++|+|+|||+.|+....+++||.+|..++.+|++||...+..|..++.++++||..+.++|||||.|+
T Consensus 82 dmitglysa~adsipilcitgqaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlid 161 (592)
T COG3960 82 DMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLID 161 (592)
T ss_pred chhhhhhhcccccccEEEecCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
+|.|+|-.+++-..- .+.+ -+...|.....+.++++.+|.+++||+|++|+|+.+.++.+.+.+|||..|+||
T Consensus 162 lp~dvq~aeiefd~d-~yep------l~~~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpv 234 (592)
T COG3960 162 LPFDVQVAEIEFDPD-MYEP------LPVYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPV 234 (592)
T ss_pred cccceEEEEEecCcc-ccCc------CCcCCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcc
Confidence 999999888753211 1110 023344556678899999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc-C
Q 011590 250 LPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR-K 320 (482)
Q Consensus 250 ~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~-~ 320 (482)
+-|.+|-|++|.|||+..|. ++|.-+-.+|+|+.||.|+... ..|..+.+.++.|+||+|+.|..+++. .
T Consensus 235 iptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanr-htgsv~vyt~gr~fihvdieptqigrvf~ 313 (592)
T COG3960 235 IPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANR-HTGSVEVYTEGRKFIHVDIEPTQIGRVFC 313 (592)
T ss_pred cchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhc-ccCceeeeecCceEEEEeccccccceeec
Confidence 99999999999999999996 3567788999999999998765 356666677889999999999999764 5
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCC--CCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPF--CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 398 (482)
||+.+++|++..|+.+++...+.+. ..+.+..|.+++.++++.... +..-+..|+.+.++++++++.+ +.
T Consensus 314 pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~r----kthfd~vp~kpqrvyeemn~~f----gr 385 (592)
T COG3960 314 PDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLR----KTHFDNVPVKPQRVYEEMNKAF----GR 385 (592)
T ss_pred CccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhh----hcccccCCCCHHHHHHHHHhhc----CC
Confidence 7999999999999998876554422 234667788887655543221 1122457899999999999999 88
Q ss_pred CcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590 399 APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 477 (482)
Q Consensus 399 ~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l 477 (482)
|.-+|+. |.+.+ .+.+++...+||.|+.++.-|.+||.+|+|+|...|.|+|.|+.+.||-.|+|-+.||...+|+++
T Consensus 386 d~~yvstiglsqi-a~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~ 464 (592)
T COG3960 386 DVCYVTTIGLSQI-AAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKI 464 (592)
T ss_pred ceeEEEeccHHHH-hhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccC
Confidence 8877776 54444 455678999999999999899999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 011590 478 MIS 480 (482)
Q Consensus 478 ~i~ 480 (482)
|-+
T Consensus 465 pyi 467 (592)
T COG3960 465 PYI 467 (592)
T ss_pred ceE
Confidence 964
No 58
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-65 Score=491.06 Aligned_cols=457 Identities=21% Similarity=0.253 Sum_probs=380.4
Q ss_pred CccCCcHHHHHHHHHHhcC---------CCEEEecCCcC-hHHHHHHHHh-C-CCcEEecCchHHHHHHHHHHHhHhCCc
Q 011590 10 QNAQIDGNTLAAKSLSLFG---------ATHMFGVVGIP-VTSLANRAVQ-L-GVRFIAFHNEQSAGYAASAYGYLTGKP 77 (482)
Q Consensus 10 ~~~~~~~~~~l~~~L~~~G---------v~~vFgvpG~~-~~~l~~al~~-~-~i~~v~~~~E~~A~~~A~g~ar~tgk~ 77 (482)
.+..+|.+++++++|.++= |.-||.+.|+. +..+-++|+. + .+.++..+||++.+++|.||+|...|-
T Consensus 3 kTvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rr 82 (617)
T COG3962 3 KTVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRR 82 (617)
T ss_pred ceehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhc
Confidence 3567899999999999863 34688888865 5578899985 3 489999999999999999999987654
Q ss_pred E--EEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCH--------hhhhccccceeeecCCcCcH
Q 011590 78 G--ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQ--------VEAVKPFSKFAVKAKDITEV 147 (482)
Q Consensus 78 ~--v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~--------~~~~~~~~k~~~~~~~~~~~ 147 (482)
. +|-.+.|||++|++++.+.|..+|+|||+|-|+.......+..+|++.| ...|+|+++|..++++||++
T Consensus 83 r~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl 162 (617)
T COG3962 83 RIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQL 162 (617)
T ss_pred eeeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcccCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHH
Confidence 4 4444569999999999999999999999999999777766666665433 36999999999999999999
Q ss_pred HHHHHHHHHHhhc-CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 011590 148 PKCVAQVLERAVS-GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226 (482)
Q Consensus 148 ~~~l~~A~~~a~~-~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G 226 (482)
...+.||++.++. ..+|||-|++|+||+.+.++.+.-+.... ..+..++.|++..++.++++|+++|||+|++|
T Consensus 163 ~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF~~r-----v~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaG 237 (617)
T COG3962 163 MSALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFFEKR-----VWRIRRPPPDERELADAAALIKSAKKPLIVAG 237 (617)
T ss_pred HHHHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhhhhh-----hhhccCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence 9999999999987 47899999999999999987654332221 12467788999999999999999999999999
Q ss_pred CCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCC
Q 011590 227 KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPK 299 (482)
Q Consensus 227 ~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~ 299 (482)
+|+.+|++.++|.+|+|+.|+||+.|..|||.+++|||+++|. ++|.+.++|||||.||+|+.++++ |....
T Consensus 238 GGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vGvTGt~AAN~~A~~ADlVigiGTR~~DFTT-gS~al 316 (617)
T COG3962 238 GGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGTLAANRAAEEADLVIGIGTRLQDFTT-GSKAL 316 (617)
T ss_pred CceeechHHHHHHHHHHhcCCceEeccCCcccccccCccccccccccchHHHHhhhhhcCEEEEeccccccccc-ccHHH
Confidence 9999999999999999999999999999999999999999984 467888999999999999998865 44445
Q ss_pred CC-CCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCC--
Q 011590 300 WS-KDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDV-- 376 (482)
Q Consensus 300 ~~-~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-- 376 (482)
|. ++.|++.|+..+.+..+. ..+++++|++..|++|.+.|+... ....|.++..+.++.|............
T Consensus 317 F~~~~~k~l~lNV~~~da~K~-~a~~lvaDAr~~L~~L~~~L~g~~----~~~~w~~~~~~~~~~w~~~~~~~~a~~~~l 391 (617)
T COG3962 317 FKNPGVKFLNLNVQPFDAYKH-DALPLVADARAGLEALSEALGGYR----TAAGWTDERERLKAAWDAEADAPTAKNHFL 391 (617)
T ss_pred hcCCCceEEEeeccccccccc-ccceehhHHHHHHHHHHHHhcccc----cchhHHHHHHHhhhhhhhhccccccccccc
Confidence 54 788999998876554322 358899999999999999998652 2345888777766666544322211111
Q ss_pred -CCCCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEE
Q 011590 377 -VPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVV 454 (482)
Q Consensus 377 -~~~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi 454 (482)
.-.+..+++-.+++.. ++++|+++. |+-.....+ +|....|+.|...++|+.|||-+..++|+|+|.|||.|+
T Consensus 392 nt~ptq~~vigav~~~~----~~~svvvcAAGsLPGdLhk-LW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~ 466 (617)
T COG3962 392 NTLPTQTQVIGAVQRTI----SDDSVVVCAAGSLPGDLHK-LWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVY 466 (617)
T ss_pred ccCccchhHHHHHHhhc----CCCcEEEEeCCCCcHHHHH-HhccCCCCceeeeecccccccccccccccccCCCCCeEE
Confidence 1236678888888888 888988876 666666644 679999999999999999999999999999999999999
Q ss_pred EEEcchhccCChHHHHHHHHcCcccccC
Q 011590 455 AVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 455 ~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
+++|||||||--.||.|.++++..|++|
T Consensus 467 vmVGDGSymMlnSEL~Tsv~~g~Ki~Vv 494 (617)
T COG3962 467 VMVGDGSYMMLNSELATSVMLGKKIIVV 494 (617)
T ss_pred EEEcccchhhhhHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999998764
No 59
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=7.4e-66 Score=504.38 Aligned_cols=444 Identities=20% Similarity=0.290 Sum_probs=356.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
.+++.+++|+++|.+.||+++||+||+.++.|+|.|+. ++++++.+.||.+|||+||||||..| .++|++|.|+|...
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~G-i~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKG-IGACVTTFGVGELS 80 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcC-ceEEEEEeccchhh
Confidence 46889999999999999999999999999999999985 67999999999999999999999999 99999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCC-------CCc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~ 162 (482)
+++||+.||++++|||+|+|.+++...+.+.+ .+| -+.+|++.++.|+..+++.+++++.+++|++.|....
T Consensus 81 AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~ 160 (561)
T KOG1184|consen 81 ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKES 160 (561)
T ss_pred hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998876654321 112 2578999999999999999999999999999998754
Q ss_pred CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (482)
Q Consensus 163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la 242 (482)
.||||.||.|+.+.+++...+.+.|.. ....+......++.++.+++++..+++|+|++|..+++.++.++..+|+
T Consensus 161 -rPVYi~iP~n~~~~~~~~~~l~~~p~~---~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~ 236 (561)
T KOG1184|consen 161 -KPVYIGVPANLADLPVPAFGLLPVPLD---LSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELA 236 (561)
T ss_pred -CCeEEEeecccccCcCCcccCCCCCcc---cCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHH
Confidence 799999999999999887643222210 0001111122345678889999999999999999999999999999999
Q ss_pred HHhCCcEeeCCCCCCCCCCCCCcccchH--------HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590 243 ESTGIPFLPTPMGKGLLPDTHPLAATAA--------RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314 (482)
Q Consensus 243 e~~g~pv~~t~~~~g~~~~~hp~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~ 314 (482)
+++++|++.|+++||.+||+||+|.|.+ ..+.++.||++|.+|..++++++.++.. ..++.++++++.|.-
T Consensus 237 ~~~~~p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~-~~k~~~~i~~~~d~v 315 (561)
T KOG1184|consen 237 DATGFPVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSY-LYKKKNAIEFHSDRV 315 (561)
T ss_pred HhhCCCeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEe-ecCccceEEEecceE
Confidence 9999999999999999999999999964 3578899999999999999988766543 345788999998876
Q ss_pred hhcc-cCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 011590 315 EIEL-RKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL 393 (482)
Q Consensus 315 ~~~~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 393 (482)
.+.. ..+. -+.+.+|++|+.+++........ + .+............+..+++...+++.++.++
T Consensus 316 ~i~~~~f~~----v~mk~~l~~Lak~I~~~~~~~~~---y-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l- 380 (561)
T KOG1184|consen 316 KIRNATFGG----VLMKDFLQELAKRIKKNKTSYEN---Y-------VRIPVPEPKPLACPPNAPLRQEWMWNHIQKFL- 380 (561)
T ss_pred Eeccccccc----eeHHHHHHHHHHhhcccccchhc---c-------cccCCCCCCCCCCCCcchhhHHHHHHHHHhhc-
Confidence 5532 1222 26689999999988754211000 0 00000000001122345678888899999888
Q ss_pred ccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590 394 GVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472 (482)
Q Consensus 394 ~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~ 472 (482)
.+.+++++| |.+.+.+.+.-||. .-.+.....||++||.+|+++|+++|.|+++||+|+|||||++|.||++|+
T Consensus 381 ---~~~d~v~~ETG~S~F~~~~~~fP~--g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStm 455 (561)
T KOG1184|consen 381 ---SSGDVVIAETGDSWFGINQTKFPK--GCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTM 455 (561)
T ss_pred ---CCCceEEEecccceecceeecccc--ccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHH
Confidence 788888888 55544444433343 335677778999999999999999999999999999999999999999999
Q ss_pred HHcCccccc
Q 011590 473 LSCIIMISS 481 (482)
Q Consensus 473 ~r~~l~i~~ 481 (482)
+|.+||..+
T Consensus 456 ir~gl~~~i 464 (561)
T KOG1184|consen 456 IRWGLKPII 464 (561)
T ss_pred HhcCCCcEE
Confidence 999999753
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.7e-43 Score=352.82 Aligned_cols=453 Identities=14% Similarity=0.132 Sum_probs=331.7
Q ss_pred CCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 9 ~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
++......+.++++.|.++||++++-+||+...+|.-++.+. +|+++.--+|++|+|+|.|.+|++++|++++||||..
T Consensus 3 ~~~~nt~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA 82 (566)
T COG1165 3 VSNPNTLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTA 82 (566)
T ss_pred ccchhHHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcch
Confidence 344566899999999999999999999999999999988764 8999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc-------HHHHHHHHHHHhhc
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE-------VPKCVAQVLERAVS 160 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~-------~~~~l~~A~~~a~~ 160 (482)
++|+.+|+.||...++|+|++|+++|.+.++.|+.|.+||..+|..+++|+..+..|+. +...-.++...|++
T Consensus 83 ~ANl~PAViEA~~srvpLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~ 162 (566)
T COG1165 83 VANLYPAVIEANLSRVPLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQART 162 (566)
T ss_pred hhhccHHHHhhhhcCCceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999988763 34444566666767
Q ss_pred CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCC--CC--HHHHHHHHHHHHhCCCCEEEEcCCccccccHH
Q 011590 161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGG--IV--NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236 (482)
Q Consensus 161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~ 236 (482)
..+||||+++|.+..--+.+++.....++..+-.+....... .+ ++.+.. . ....+||.+|++|.-.. ...+
T Consensus 163 ~~~GpVHiN~PfrePL~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~rgviv~G~~~~--~e~~ 238 (566)
T COG1165 163 PHAGPVHINVPFREPLVPDLEPEGAGTPWGRPLGHWWFYTGPWTVDQGPDLLSE-W-FFWRQKRGVIVAGRMSA--QEGK 238 (566)
T ss_pred CCCCceEecCCCCccCCCCCCccccccccccccCchhhcCCceeeecccccccc-h-hhhcccCceEEEecCch--hhhH
Confidence 888999999999743222222100000100000000000000 00 111111 2 22356999999998763 5556
Q ss_pred HHHHHHHHhCCcEeeCCCCC-C-CCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590 237 ELKKLVESTGIPFLPTPMGK-G-LLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314 (482)
Q Consensus 237 ~l~~lae~~g~pv~~t~~~~-g-~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~ 314 (482)
.+.++|+.+|+|+++.+.+. + -++..+.+..-....+-|.. |.||-+|.++.......|...+ +..+.+.||..+.
T Consensus 239 ~i~~~a~~lg~PilaDplS~lr~~i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~-~~~~~~vvd~~~~ 316 (566)
T COG1165 239 GILALANTLGWPILADPLSPLRNYIPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADT-EPIEYWVVDPGGG 316 (566)
T ss_pred HHHHHHHHhCCceecccccccCCCcccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhcc-CCCcEEEEcCCCC
Confidence 69999999999999998763 1 13444443333333344555 9999999988654333333322 3368888999887
Q ss_pred hhcccCC-ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHh
Q 011590 315 EIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL 393 (482)
Q Consensus 315 ~~~~~~~-~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 393 (482)
..+..+. +..+.+|+..+++.+...... +..|.+++.+..++.+.......... .++..++...|.+.+
T Consensus 317 ~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~Wl~~~~~~~~~~~~~v~~~~~~~--~~~e~~~a~~l~~~l- 386 (566)
T COG1165 317 WLDPSHHATTRLSADVATWARSIHPAGRI-------RKPWLDEWLALNEKARQAVRDQLAAE--ALTEAHLAAALADLL- 386 (566)
T ss_pred cCCcccccceEEEeehhHhHHHhcccccc-------ccHHHHHHHHHHHHHHHHHHHHhccc--CchhhHHHHHHHHhC-
Confidence 7765543 566899999888776544221 34688777666665544433333222 577788888898888
Q ss_pred ccCCCCcEEEe-CchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590 394 GVGSPAPILVS-EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472 (482)
Q Consensus 394 ~~~~~~~i~v~-eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~ 472 (482)
|+++-++. .+..-.++ ..++........+.|.|-.+|..-+++|+|++.+. .+++++++||-||+++.|.|.-.
T Consensus 387 ---p~~~~LFvgNSmpVRdv-d~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~ 461 (566)
T COG1165 387 ---PPQDQLFVGNSMPVRDV-DALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLL 461 (566)
T ss_pred ---CCCCeEEEecCchhhhH-HHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhc
Confidence 76665544 33322333 34455557778888888888989999999999986 68899999999999999999998
Q ss_pred HHcCcccccC
Q 011590 473 LSCIIMISSI 482 (482)
Q Consensus 473 ~r~~l~i~~~ 482 (482)
.++..|+++|
T Consensus 462 k~~~~~ltIv 471 (566)
T COG1165 462 KKVPQPLTIV 471 (566)
T ss_pred CCCCCCeEEE
Confidence 8888887664
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=2.3e-44 Score=321.00 Aligned_cols=162 Identities=27% Similarity=0.464 Sum_probs=156.6
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
+++++|++.|+++||+++||+||+.+++|++++.+ .+|++|.+|||++|++||+||+|++|||++|++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 57999999999999999999999999999999976 68999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
|+++|+.|++|||+|+|+.+++..+++.+|++||..+++++|||+.++++++++++.+++|++.|.++ +|||||+||.|
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 159 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAK-RGVAVLILPGD 159 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEeChH
Confidence 99999999999999999999998899999999999999999999999999999999999999999995 59999999999
Q ss_pred hhcc
Q 011590 174 VLHQ 177 (482)
Q Consensus 174 v~~~ 177 (482)
++.+
T Consensus 160 v~~~ 163 (164)
T cd07039 160 VQDA 163 (164)
T ss_pred Hhcc
Confidence 9764
No 62
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=8.6e-43 Score=308.32 Aligned_cols=154 Identities=20% Similarity=0.284 Sum_probs=149.6
Q ss_pred HHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH
Q 011590 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN 97 (482)
Q Consensus 19 ~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~ 97 (482)
+|++.|+++||+++||+||+.+++|++++.+ .++++|.+|||++|++||+||+|+||||+||++|+|||++|+++||++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 6899999999999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc------HHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 98 GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 98 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~------~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
|+.+++|||+|+|+.+....+++.+|++||..+++++|||+.+++++++ +++.+++|++.|.++|||||||+||
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 9999999999999999998899999999999999999999999999999 9999999999999999999999999
Q ss_pred c
Q 011590 172 T 172 (482)
Q Consensus 172 ~ 172 (482)
.
T Consensus 162 ~ 162 (162)
T cd07037 162 F 162 (162)
T ss_pred C
Confidence 3
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=4.7e-42 Score=310.07 Aligned_cols=169 Identities=34% Similarity=0.653 Sum_probs=158.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
||++|+|++.|+++||+|+||+||+.+.+|++++.+. ++++|.++||.+|++||+||+|++|||++|++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 6899999999999999999999999999999999977 799999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCC-CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++|++|+.+++|||+|+|+++....+++.+| ++||.+++++++||++++.+++++++.+++|++.|..+++|||||+||
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred HHHhhcccceeeEEEEecccchhhhcccccccchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 9999999999999999999999999999999 899999999999999999999999999999999998889999999999
Q ss_pred cchhccccChh
Q 011590 172 TDVLHQTISVS 182 (482)
Q Consensus 172 ~dv~~~~~~~~ 182 (482)
.|++.++++++
T Consensus 161 ~dv~~~~~~~~ 171 (172)
T PF02776_consen 161 QDVQEAEVDEP 171 (172)
T ss_dssp HHHHTSEEECT
T ss_pred hhHhhCccCCC
Confidence 99999998754
No 64
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=3.4e-39 Score=287.34 Aligned_cols=153 Identities=25% Similarity=0.395 Sum_probs=143.2
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~ 96 (482)
|+|++.|+++||+||||+||+.+++|++++.+. +|++|.++||++|++||+||+|+| ||+||++|+|||++|+++||+
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~ 79 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA 79 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH
Confidence 579999999999999999999999999999654 899999999999999999999999 899999999999999999999
Q ss_pred HhhhCCCcEEEEeCCCCcccCCCCCC-------CCc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 97 NGMINTWPIVMISGSCDQKDFGRGDF-------QEL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 97 ~A~~~~~Pvl~i~g~~~~~~~~~~~~-------q~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
+|+.|++|||+|+|+++....+++.. |++ ||.++++++|||+.++++++++++.+++|++.|.++| |||||
T Consensus 80 ~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~-gPV~l 158 (162)
T cd07038 80 GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRES-RPVYI 158 (162)
T ss_pred HHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCC-CCEEE
Confidence 99999999999999999887777542 334 5899999999999999999999999999999999987 99999
Q ss_pred EcCc
Q 011590 169 DLPT 172 (482)
Q Consensus 169 ~iP~ 172 (482)
+||.
T Consensus 159 ~iP~ 162 (162)
T cd07038 159 EIPR 162 (162)
T ss_pred EccC
Confidence 9994
No 65
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=3.3e-36 Score=267.62 Aligned_cols=155 Identities=36% Similarity=0.651 Sum_probs=150.5
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN 97 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~ 97 (482)
|+|++.|+++||+++||+||+.+.++++++.+.++++|.++||.+|++||+||+|.+||+++|++|+|||++|++++|++
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~ 80 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLAN 80 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHH
Confidence 57999999999999999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 98 GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 98 A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
|+.+++|||+|+|+++....++..+|+.||..++++++||+.++++++++.+.+++|++.|.++|+|||||+||.
T Consensus 81 A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 81 AYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 999999999999999999999888999999999999999999999999999999999999999988999999984
No 66
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.98 E-value=6.8e-32 Score=241.16 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=141.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
++|+|++.|+++||+++||+||+.++++++++.+ .++++|.++||++|++||+||+|.+++ +|++|+|||++|
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~--v~~~~~gpG~~n 78 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR--AMTATSGPGLNL 78 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc--EEEeeCcchHHH
Confidence 4799999999999999999999999999999963 579999999999999999999998776 999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
++++|++|+.+++|||+|+|+.+....+ ...+|++|+..++++ +||+.++.+++++++.+++|++.|.++| +||+|
T Consensus 79 ~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~-~Pv~l 156 (160)
T cd07034 79 MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYR-LPVIV 156 (160)
T ss_pred HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhC-CCEEE
Confidence 9999999999999999999999988766 446777999999999 9999999999999999999999999998 89999
Q ss_pred EcC
Q 011590 169 DLP 171 (482)
Q Consensus 169 ~iP 171 (482)
.+.
T Consensus 157 ~~~ 159 (160)
T cd07034 157 LSD 159 (160)
T ss_pred EcC
Confidence 763
No 67
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.97 E-value=8.7e-30 Score=226.10 Aligned_cols=153 Identities=21% Similarity=0.366 Sum_probs=144.9
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~ 96 (482)
++|++.|+++||+++||+||+...++++++.+ .+++++.++||++|++||+||+|.++ ++++++++|||++|++++|.
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~ 79 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLA 79 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHH
Confidence 47899999999999999999999999999875 57999999999999999999999998 99999999999999999999
Q ss_pred HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 97 ~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+|+.+++|||+|+++++....+.+.+|+.|+..++++++||..+++++++..+.+.+|++.|.++ +|||||++|.
T Consensus 80 ~a~~~~~Pvl~i~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~-~gPv~l~ip~ 154 (154)
T cd06586 80 DAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYAS-QGPVVVRLPR 154 (154)
T ss_pred HHHhcCCCEEEEeCCCChhhhccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcC-CCCEEEEccC
Confidence 99999999999999998877677789999999999999999999999999999999999999988 7999999984
No 68
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.95 E-value=3.7e-28 Score=214.03 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~ 96 (482)
|++++.|+++||+++||+||+.+++|++++. .+|++| .+|||+++++||++| |.+|++++|++++|+| |++++|+
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~-~~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~ 77 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIE-KDFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALA 77 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHH-hCCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHH
Confidence 6899999999999999999999999999995 459999 889999999998888 9999999999988876 9999999
Q ss_pred Hhh-hCCCcEEEEeCCCCc------ccCCCCCCCCc--CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEE
Q 011590 97 NGM-INTWPIVMISGSCDQ------KDFGRGDFQEL--DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167 (482)
Q Consensus 97 ~A~-~~~~Pvl~i~g~~~~------~~~~~~~~q~~--d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~ 167 (482)
+|+ .+++|||+|+|++.. ...+.+.+++. ++..+ ++.++.+++++ +.+++|++.|.++| |||+
T Consensus 78 ~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~~i------~~~~i~~~e~~-~~i~~A~~~a~~~~-gPv~ 149 (157)
T TIGR03845 78 SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTLGI------PYTIPREPEEA-KLIEKAISDAYENS-RPVA 149 (157)
T ss_pred HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHcCC------CeEEeCCHHHH-HHHHHHHHHHHhCC-CCEE
Confidence 999 999999999999877 44444444432 33322 68899999999 99999999999998 9999
Q ss_pred EEcCcchh
Q 011590 168 LDLPTDVL 175 (482)
Q Consensus 168 l~iP~dv~ 175 (482)
|.++.+++
T Consensus 150 il~~~~~~ 157 (157)
T TIGR03845 150 ALLDPKYW 157 (157)
T ss_pred EEEeCCcC
Confidence 99998763
No 69
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.93 E-value=8.5e-26 Score=196.27 Aligned_cols=129 Identities=40% Similarity=0.658 Sum_probs=115.9
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCE
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDV 280 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDl 280 (482)
+++++++|++||||+|++|.++.++++.+++.+|+|++|+||++++++||+||++||+|+|. ..++++++||+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 57899999999999999999999999999999999999999999999999999999999983 35688999999
Q ss_pred EEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEeccHHHHHHHH
Q 011590 281 ALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVGDAKKVLEMI 336 (482)
Q Consensus 281 vl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~D~~~~l~~L 336 (482)
||++|++++++.++++...|.++.++||||.|+.+++..+ +++.+++|++.+|++|
T Consensus 81 vl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 81 VLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred EEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 9999999999888776556776679999999999998665 6999999999999986
No 70
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.92 E-value=1.2e-24 Score=216.44 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=104.4
Q ss_pred CCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCC-cEEEEEcCChh-hHhhHHHHHHhhhCCC
Q 011590 28 GATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGK-PGILLTVSGPG-CVHGLAGLSNGMINTW 103 (482)
Q Consensus 28 Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk-~~v~~~t~GpG-~~N~~~ai~~A~~~~~ 103 (482)
||++++|+|++...+|++.+.+ ..+++|.+.+|..|+.+|.||+..||| |.|.+..||.| +.|.++.|+.....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 7999999999999999999973 379999999999999999999999776 45555778887 6666677777899999
Q ss_pred cEEEEeCCCCcccCCCCCCCCcC----Hhhhhcccc-ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 104 PIVMISGSCDQKDFGRGDFQELD----QVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 104 Pvl~i~g~~~~~~~~~~~~q~~d----~~~~~~~~~-k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
|+++|.|.+......... |..- ...+++.+- +|....++.++..+.+++|++.+.... .|+.+.++.+.+
T Consensus 81 P~l~~i~~RG~~g~~dep-qh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~-~p~a~l~~~~~~ 155 (361)
T TIGR03297 81 PLLLIVGWRGEPGVHDEP-QHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATS-RPYALVVRKGTF 155 (361)
T ss_pred CeeEEEecCCCCCCCCCc-hhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHC-CCEEEEEccccc
Confidence 999999998554222221 2211 122333322 333333455667777777777776643 677777776654
No 71
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.89 E-value=1.2e-21 Score=209.37 Aligned_cols=414 Identities=17% Similarity=0.117 Sum_probs=234.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
-++|.++++..+.+.|++.+.|+||++..++++.+.+ .++.+....+|.+|..||.|-+.+..| ++..|+|||+
T Consensus 4 ~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~aG~r--a~t~ts~~Gl 81 (595)
T TIGR03336 4 LLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWSGLR--AFCTMKHVGL 81 (595)
T ss_pred eecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhcCcc--eEEEccCCch
Confidence 5799999999999999999999999999999998753 358888999999999999999998766 6677999998
Q ss_pred HhhHHHHHHhh--hCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhcccccee-eecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590 89 VHGLAGLSNGM--INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGG 165 (482)
Q Consensus 89 ~N~~~ai~~A~--~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~-~~~~~~~~~~~~l~~A~~~a~~~~~gP 165 (482)
.=+.-.|..+- --+.|++++.++.+....-+ .+.|-+...+ .++|- ....+++++.+...+||+.|...+ -|
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~~---~~q~d~~~~~-~~~~~vl~p~~~qE~~d~~~~Af~lae~~~-~P 156 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMHSSQ---NEQDTRHYAK-FAKIPCLEPSTPQEAKDMVKYAFELSEKFG-LP 156 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCccch---hhHhHHHHHH-hcCCeEECCCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 66655554433 34788999999875443111 1111122222 23443 445677889999999999999866 78
Q ss_pred EEEEcCcchhccccC--hhHH---HHHH-HhhhhhcccccCCCCC---H----HHHHHHHHHHHhCCCC--------EEE
Q 011590 166 CYLDLPTDVLHQTIS--VSEA---EKLL-KEAESAKETVTQGGIV---N----SDIDKAVSLLKEAKKP--------LIV 224 (482)
Q Consensus 166 v~l~iP~dv~~~~~~--~~~~---~~~~-~~~~~~~~~~~~~~~~---~----~~~~~~~~~L~~a~rp--------vil 224 (482)
|.+....-+-...-+ .... .... .+.+..+ ....+... . +.++++.+.....+.. +.|
T Consensus 157 V~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~i 235 (595)
T TIGR03336 157 VILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPER-YVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGV 235 (595)
T ss_pred EEEEEeeeeccceeeEecCCCcccccccCCCCChhh-cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEE
Confidence 988886544322211 0000 0000 0000000 00000000 0 1122222221221111 445
Q ss_pred EcCCccccccHHHHHHHHHHhCCc--EeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC-CCC-
Q 011590 225 FGKGAAYARAEGELKKLVESTGIP--FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP-PKW- 300 (482)
Q Consensus 225 ~G~g~~~~~~~~~l~~lae~~g~p--v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~-~~~- 300 (482)
+..|.. .....+.++.+|+. |+. +..-.|+--- ...+++++.+.||++=-.... .+.. ..+
T Consensus 236 v~~G~~----~~~a~ea~~~~Gi~~~v~~-------~~~i~Pld~~-~i~~~~~~~~~vivvEe~~~~---~~~~~~~~~ 300 (595)
T TIGR03336 236 IASGIA----YNYVKEALERLGVDVSVLK-------IGFTYPVPEG-LVEEFLSGVEEVLVVEELEPV---VEEQVKALA 300 (595)
T ss_pred EEcCHH----HHHHHHHHHHcCCCeEEEE-------eCCCCCCCHH-HHHHHHhcCCeEEEEeCCccH---HHHHHHHHH
Confidence 555532 22233334444543 221 1111232211 234567788888888433210 0000 000
Q ss_pred -CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCC--C
Q 011590 301 -SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDV--V 377 (482)
Q Consensus 301 -~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~ 377 (482)
..+.++..+..... +-+ -...=|.+.+.+.|.+. ...+ .....+. +. .. +. ..++. .
T Consensus 301 ~~~~~~v~~~G~~d~----fi~-~~~~Ld~~~i~~~i~~~-~~~~-~~~~~~~----~~---~~----~~--~r~~~~C~ 360 (595)
T TIGR03336 301 GTAGLNIKVHGKEDG----FLP-REGELNPDIVVNALAKF-GLAP-SVTHEKP----VP---KP----LP--VRPPSLCA 360 (595)
T ss_pred HhcCCCeEEecccCC----ccC-cccCcCHHHHHHHHHHh-CCCc-ccccccc----cc---cc----cC--CCCCCCCC
Confidence 00112323322211 101 11112555555555442 2110 0000000 00 00 00 00011 1
Q ss_pred CCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590 378 PFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456 (482)
Q Consensus 378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~ 456 (482)
.-....+++.|++.+ |++.+++.|+ .+..+. ..|+.++.+ +++||+++|+|+|+++|.|+++||++
T Consensus 361 GCp~~~~~~~l~~~l----~~d~ivv~D~G~~~~~~-------~~p~~~~~~--~~~mG~~~~~AiGa~~a~p~~~Vv~i 427 (595)
T TIGR03336 361 GCPHRATFYAMKKVA----DREAIFPSDIGCYTLGI-------QPPLGTVDT--TLCMGASIGVASGLSKAGEKQRIVAF 427 (595)
T ss_pred CCCChHHHHHHHHhc----cCCcEEecCcchhhccc-------cCCccccce--eeccCchHHHHhhhhhcCCCCCEEEE
Confidence 123355788888888 9999999984 443321 124555543 58999999999999999999999999
Q ss_pred EcchhccCC-hHHHHHHHHcCcccccC
Q 011590 457 EGDSGFGFS-AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 457 ~GDGsf~~~-~~eL~T~~r~~l~i~~~ 482 (482)
+|||+|+|+ +|||+|++|+++|+++|
T Consensus 428 ~GDG~f~~~g~~eL~tav~~~~~i~~v 454 (595)
T TIGR03336 428 IGDSTFFHTGIPGLINAVYNKANITVV 454 (595)
T ss_pred eccchhhhcCHHHHHHHHHcCCCeEEE
Confidence 999999998 99999999999999865
No 72
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.89 E-value=3.6e-23 Score=191.61 Aligned_cols=101 Identities=24% Similarity=0.284 Sum_probs=90.4
Q ss_pred CCCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590 377 VPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA 455 (482)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~ 455 (482)
.++++.++++.|++.+ |+++|++.|+ .+..|..+ +++...|++|+.++++|+|||++|+|||+++|+|+|+||+
T Consensus 6 ~~l~~~~~~~~l~~~l----~~d~iiv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~ 80 (202)
T cd02006 6 VPIKPQRVYEEMNKAF----GRDVRYVTTIGLSQIAGAQ-MLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVA 80 (202)
T ss_pred CCcCHHHHHHHHHhhC----CCCeEEEECCcHHHHHHHH-hcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEE
Confidence 4688888999999988 9999999994 45556555 4688889999999889999999999999999999999999
Q ss_pred EEcchhccCChHHHHHHHHcCcccccC
Q 011590 456 VEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|+|||||+|++|||+|++||++|+++|
T Consensus 81 i~GDG~f~m~~~eL~Ta~~~~lpviiv 107 (202)
T cd02006 81 LSGDYDFQFMIEELAVGAQHRIPYIHV 107 (202)
T ss_pred EEeChHhhccHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999999875
No 73
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.88 E-value=1.2e-22 Score=186.99 Aligned_cols=101 Identities=23% Similarity=0.348 Sum_probs=89.9
Q ss_pred CCCCcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEE
Q 011590 377 VPFNFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVA 455 (482)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~ 455 (482)
+++++.++++.|++.+ |++++++.|+ .+..|.. .+|+...|++|+.++++|+|||++|+|||+++|.|+|+||+
T Consensus 2 ~~l~~~~~~~~l~~~l----~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~ 76 (196)
T cd02013 2 NPMHPRQVLRELEKAM----PEDAIVSTDIGNICSVAN-SYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVA 76 (196)
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEECCcHHHHHHH-HhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEE
Confidence 4577788899999988 9999999984 4556554 45688889999999899999999999999999999999999
Q ss_pred EEcchhccCChHHHHHHHHcCcccccC
Q 011590 456 VEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 456 ~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
++|||||+|++|||+|++||++|+++|
T Consensus 77 i~GDG~f~m~~~eL~Ta~~~~lpvi~v 103 (196)
T cd02013 77 IAGDGAWGMSMMEIMTAVRHKLPVTAV 103 (196)
T ss_pred EEcchHHhccHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999999865
No 74
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.85 E-value=2.4e-21 Score=177.17 Aligned_cols=98 Identities=21% Similarity=0.364 Sum_probs=86.1
Q ss_pred CcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEc
Q 011590 380 NFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG 458 (482)
Q Consensus 380 ~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~G 458 (482)
++..+++.|++.+ |++++++.|+ .+..|..+ +++...|++|+.++++|+|||++|+|||+++|.|+++||+++|
T Consensus 2 ~~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~G 76 (186)
T cd02015 2 KPQEVIKELSELT----PGDAIVTTDVGQHQMWAAQ-YYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDG 76 (186)
T ss_pred CHHHHHHHHHhhC----CCCeEEEeCCcHHHHHHHH-hcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEc
Confidence 4456788888888 9999999995 45555544 5677889999999889999999999999999999999999999
Q ss_pred chhccCChHHHHHHHHcCcccccC
Q 011590 459 DSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 459 DGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
||||+|+.|||+|++||++|+++|
T Consensus 77 DG~f~~~~~eL~ta~~~~lpi~iv 100 (186)
T cd02015 77 DGSFQMNIQELATAAQYNLPVKIV 100 (186)
T ss_pred ccHHhccHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999764
No 75
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.85 E-value=2.4e-21 Score=175.35 Aligned_cols=96 Identities=27% Similarity=0.363 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590 382 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG 460 (482)
.++++.|++.+ |++++++.| |.+..|.. .+|+...|++|+.++++|+|||++|+|+|+++|+|+++||+|+|||
T Consensus 2 ~~~~~~l~~~l----~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG 76 (177)
T cd02010 2 QRIVHDLRAVM----GDDDIVLLDVGAHKIWMA-RYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDG 76 (177)
T ss_pred HHHHHHHHHHC----CCCcEEEecCcHHHHHHH-HhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcch
Confidence 34678888888 999999988 55566654 4568888899999999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHcCcccccC
Q 011590 461 GFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 461 sf~~~~~eL~T~~r~~l~i~~~ 482 (482)
||+|+.|||+|++||++|+++|
T Consensus 77 ~f~m~~~eL~ta~~~~l~vi~v 98 (177)
T cd02010 77 GFMMNSQELETAVRLKIPLVVL 98 (177)
T ss_pred HHHhHHHHHHHHHHHCCCeEEE
Confidence 9999999999999999999875
No 76
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.83 E-value=7.6e-21 Score=176.32 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=84.7
Q ss_pred cHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590 383 TPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461 (482)
Q Consensus 383 ~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs 461 (482)
++++.|++.+ |++++++.| |.+..|..+ +|+...|++|+.++++|+|||++|+|||+++|.|+++||+++||||
T Consensus 3 ~~~~~l~~~l----~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGs 77 (205)
T cd02003 3 EVLGALNEAI----GDDDVVINAAGSLPGDLHK-LWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGS 77 (205)
T ss_pred hHHHHHHHhC----CCCCEEEECCCcchHHHHH-hCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccch
Confidence 4677888888 999999998 556666654 4687889999999899999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHcCcccccC
Q 011590 462 FGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 462 f~~~~~eL~T~~r~~l~i~~~ 482 (482)
|+|+.|||+|++||++|+++|
T Consensus 78 f~m~~~eL~Ta~~~~lpv~iv 98 (205)
T cd02003 78 YLMLHSEIVTAVQEGLKIIIV 98 (205)
T ss_pred hhccHHHHHHHHHcCCCCEEE
Confidence 999999999999999999765
No 77
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.83 E-value=1e-20 Score=172.15 Aligned_cols=100 Identities=20% Similarity=0.316 Sum_probs=88.0
Q ss_pred CCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590 378 PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE 457 (482)
Q Consensus 378 ~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~ 457 (482)
|+++.++++.|++.+ ++++|++.|.++..+..+ +++...+++|+.++++|+|||++|+|+|+++|.|+++|++++
T Consensus 1 ~l~~~~~~~~l~~~l----~~~~iiv~d~g~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~ 75 (183)
T cd02005 1 PLTQARLWQQVQNFL----KPNDILVAETGTSWFGAL-DLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLV 75 (183)
T ss_pred CCCHHHHHHHHHHhc----CCCCEEEECCchHHHhhh-hccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEE
Confidence 456777899999988 999999999544445544 457778899999999999999999999999999999999999
Q ss_pred cchhccCChHHHHHHHHcCcccccC
Q 011590 458 GDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 458 GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|||||+|+.|||+|++||++|+++|
T Consensus 76 GDG~f~~~~~el~ta~~~~~p~~iv 100 (183)
T cd02005 76 GDGSFQMTVQELSTMIRYGLNPIIF 100 (183)
T ss_pred CCchhhccHHHHHHHHHhCCCCEEE
Confidence 9999999999999999999999875
No 78
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.82 E-value=2.2e-20 Score=168.70 Aligned_cols=96 Identities=44% Similarity=0.704 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590 382 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG 460 (482)
.++++.|++.+ |++++++.| |.+..|. ..+|+...|++++.++++|+|||++|+|||++++.|+++|++++|||
T Consensus 2 ~~~~~~l~~~l----~~~~iiv~d~g~~~~~~-~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG 76 (172)
T cd02004 2 YRVLHELQEAL----PDDAIIVSDGGNTMDWA-RYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDG 76 (172)
T ss_pred HHHHHHHHHHC----CCCcEEEEcCchHHHHH-HHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcch
Confidence 35678888888 999999999 4555555 45568888999999988999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHcCcccccC
Q 011590 461 GFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 461 sf~~~~~eL~T~~r~~l~i~~~ 482 (482)
||+|+.|||+|++|+++|+++|
T Consensus 77 ~f~~~~~el~ta~~~~lpv~iv 98 (172)
T cd02004 77 AFGFSGMELETAVRYNLPIVVV 98 (172)
T ss_pred hhcCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999998764
No 79
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.82 E-value=1.1e-20 Score=170.90 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=83.9
Q ss_pred ccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhc-CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG 460 (482)
..+++.|++.+ |++.+++.|++++..+...+++. ..|++|+.+.++|+|||++|+|||+++|. +|+||+|+|||
T Consensus 4 ~~~~~~l~~~l----~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDG 78 (175)
T cd02009 4 PALARALPDHL----PEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDL 78 (175)
T ss_pred HHHHHHHHHhC----CCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehH
Confidence 34677888888 99999999965544444556787 78999999999999999999999999998 99999999999
Q ss_pred hccCChHHHHHHHHcCcccccC
Q 011590 461 GFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 461 sf~~~~~eL~T~~r~~l~i~~~ 482 (482)
||+|++|||+|++||++|+++|
T Consensus 79 sf~m~~~eL~ta~~~~l~v~iv 100 (175)
T cd02009 79 SFLHDLNGLLLGKQEPLNLTIV 100 (175)
T ss_pred HHHHhHHHHHhccccCCCeEEE
Confidence 9999999999999999999865
No 80
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.81 E-value=5.9e-20 Score=166.74 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=87.2
Q ss_pred CCcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590 379 FNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE 457 (482)
Q Consensus 379 ~~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~ 457 (482)
+++.++++.|++.+ +++++++.| |.+..+..+ +|+...|++|+.++++|+|||++|+|+|+++++|+++||+++
T Consensus 2 ~~~~~~~~~l~~~~----~~~~ii~~d~g~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~ 76 (178)
T cd02014 2 IHPERVAAELNKRA----PDDAIFTIDVGNVTVWAAR-HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALS 76 (178)
T ss_pred CCHHHHHHHHHhHC----CCCeEEEEcCcHHHHHHHH-hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 45667888888888 999999888 555555544 568888999999999999999999999999999999999999
Q ss_pred cchhccCChHHHHHHHHcCcccccC
Q 011590 458 GDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 458 GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|||||+|+.|||+|++|+++|+++|
T Consensus 77 GDG~f~~~~~el~t~~~~~lp~~~i 101 (178)
T cd02014 77 GDGGFAMLMGDLITAVKYNLPVIVV 101 (178)
T ss_pred cchHHHhhHHHHHHHHHhCCCcEEE
Confidence 9999999999999999999998764
No 81
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.78 E-value=2.3e-19 Score=163.10 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=84.8
Q ss_pred CcccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEc
Q 011590 380 NFMTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG 458 (482)
Q Consensus 380 ~~~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~G 458 (482)
++.++++.|++.+ |++++++.|+ .+..|. ..+++...|++++.+.+ |+||+++|+|+|+++|.|+++|++++|
T Consensus 2 ~~~~~~~~l~~~l----~~~~~iv~d~g~~~~~~-~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~G 75 (178)
T cd02002 2 TPEYLAAALAAAL----PEDAIIVDEAVTNGLPL-RDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIG 75 (178)
T ss_pred CHHHHHHHHHhhC----CCCeEEEecCCcccHHH-HHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEc
Confidence 3456788888888 9999999994 555555 55668778899999888 999999999999999999999999999
Q ss_pred chhccCChHHHHHHHHcCcccccC
Q 011590 459 DSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 459 DGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
||+|+|+.+||+|++++++|+++|
T Consensus 76 DG~f~~~~~el~ta~~~~~p~~~i 99 (178)
T cd02002 76 DGSFMYTIQALWTAARYGLPVTVV 99 (178)
T ss_pred CchhhccHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999865
No 82
>PRK06163 hypothetical protein; Provisional
Probab=99.74 E-value=3.8e-18 Score=156.72 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCCCcccHHHHHHHHHhccCCCCcEEEeCch---hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcE
Q 011590 377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGA---NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLV 453 (482)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~---~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~v 453 (482)
-.++..++++.|++.+ +++++++.|.+ +..|..+ ..++.++ .+|+|||++|+|+|+++|.|+++|
T Consensus 11 ~~~~~~~~i~~l~~~l----~~~~~iv~D~G~~~~~~~~~~-----~~~~~~~---~~GsMG~glpaAiGaalA~p~r~V 78 (202)
T PRK06163 11 KVMNRFDLTCRLVAKL----KDEEAVIGGIGNTNFDLWAAG-----QRPQNFY---MLGSMGLAFPIALGVALAQPKRRV 78 (202)
T ss_pred CCcCHHHHHHHHHHhc----CCCCEEEECCCccHHHHHHhh-----cCCCCeE---eecccccHHHHHHHHHHhCCCCeE
Confidence 4567777888888888 88888888854 3344332 2455665 389999999999999999999999
Q ss_pred EEEEcchhccCChHHHHHHHHc-CcccccC
Q 011590 454 VAVEGDSGFGFSAVEVEVWLSC-IIMISSI 482 (482)
Q Consensus 454 i~~~GDGsf~~~~~eL~T~~r~-~l~i~~~ 482 (482)
|+|+|||||+|++|||+|++|| ++|+++|
T Consensus 79 v~i~GDG~f~m~~~eL~Ta~~~~~lpi~iv 108 (202)
T PRK06163 79 IALEGDGSLLMQLGALGTIAALAPKNLTII 108 (202)
T ss_pred EEEEcchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999987 6888765
No 83
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.70 E-value=1.1e-17 Score=148.21 Aligned_cols=76 Identities=34% Similarity=0.470 Sum_probs=69.1
Q ss_pred chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|.++.|..+ +|+...|++|+.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++||++|+++|
T Consensus 3 G~~~~~~~~-~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~v 78 (153)
T PF02775_consen 3 GCHTMWAAQ-YLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIV 78 (153)
T ss_dssp SHHHHHHHH-HSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEE
T ss_pred ChhHHHHHH-hcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEE
Confidence 667777655 4688889999999999999999999999999999999999999999999999999999999999875
No 84
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.69 E-value=4.8e-17 Score=144.05 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=69.5
Q ss_pred HHHHHHHHHhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590 384 PMRIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462 (482)
Q Consensus 384 ~~~~l~~~l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf 462 (482)
+++.|.+.+ + |++++.|.+ +..++ ++....|++|+. +|+|||++|+|+|+++|.| ++||+|+|||||
T Consensus 4 ~~~~l~~~l----~-d~~vv~d~G~~~~~~---~~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f 71 (157)
T cd02001 4 AIAEIIEAS----G-DTPIVSTTGYASREL---YDVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSL 71 (157)
T ss_pred HHHHHHHhC----C-CCEEEeCCCHhHHHH---HHhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHH
Confidence 345555544 4 788888844 44433 334467888874 8999999999999999986 999999999999
Q ss_pred cCChHHHHHHHHc-CcccccC
Q 011590 463 GFSAVEVEVWLSC-IIMISSI 482 (482)
Q Consensus 463 ~~~~~eL~T~~r~-~l~i~~~ 482 (482)
+|+.|||+|++|| ++|+++|
T Consensus 72 ~m~~~el~t~~~~~~~~i~~v 92 (157)
T cd02001 72 LMNPGVLLTAGEFTPLNLILV 92 (157)
T ss_pred HhcccHHHHHHHhcCCCEEEE
Confidence 9999999999999 5999765
No 85
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.68 E-value=5.5e-17 Score=147.97 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=71.1
Q ss_pred HHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcC------CCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEE
Q 011590 384 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVE 457 (482)
Q Consensus 384 ~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~------~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~ 457 (482)
+++.|++.+ |++++++.|.+... +.+|+.. .|++|+. .|+|||++|+|+|+++|.|+++|++|+
T Consensus 4 ~~~~l~~~l----~~d~ivv~d~G~~~---~~~~~~~~~~~~~~~~~~~~---~g~mG~~lpaAiGaala~p~~~Vv~i~ 73 (188)
T cd03371 4 AIEIVLSRA----PATAAVVSTTGMTS---RELFELRDRPGGGHAQDFLT---VGSMGHASQIALGIALARPDRKVVCID 73 (188)
T ss_pred HHHHHHhhc----CCCCEEEECCCcch---HHHHHhhcCCCCCccCceee---cCccccHHHHHHHHHHhCCCCcEEEEe
Confidence 466777777 99999999844321 2333443 3467764 399999999999999999999999999
Q ss_pred cchhccCChHHHHHHHHcCc-ccccC
Q 011590 458 GDSGFGFSAVEVEVWLSCII-MISSI 482 (482)
Q Consensus 458 GDGsf~~~~~eL~T~~r~~l-~i~~~ 482 (482)
|||+|+|+.|||+|++||++ |+++|
T Consensus 74 GDG~f~m~~~eL~ta~~~~l~~i~iv 99 (188)
T cd03371 74 GDGAALMHMGGLATIGGLAPANLIHI 99 (188)
T ss_pred CCcHHHhhccHHHHHHHcCCCCcEEE
Confidence 99999999999999999997 56543
No 86
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.68 E-value=1.2e-16 Score=143.70 Aligned_cols=94 Identities=27% Similarity=0.398 Sum_probs=80.8
Q ss_pred HHHHHHHHHhccCCCCcEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590 384 PMRIIRDAILGVGSPAPILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462 (482)
Q Consensus 384 ~~~~l~~~l~~~~~~~~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf 462 (482)
+++.|++.+ +++++++.|.+ ...+. ..++....+..++.+.++|+||+++|+|+|++++.|+++|++++|||+|
T Consensus 2 ~~~~l~~~~----~~~~~i~~d~g~~~~~~-~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~ 76 (168)
T cd00568 2 VLAALRAAL----PEDAIVVNDAGNSAYWA-YRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGF 76 (168)
T ss_pred HHHHHHHHC----CCCCEEEeCCcHHHHHH-HHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHH
Confidence 466777777 88999988854 44444 4455666778888888899999999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCcccccC
Q 011590 463 GFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 463 ~~~~~eL~T~~r~~l~i~~~ 482 (482)
+|+.+||+|++++++|+++|
T Consensus 77 ~~~~~~l~ta~~~~~~~~~i 96 (168)
T cd00568 77 MMTGQELATAVRYGLPVIVV 96 (168)
T ss_pred hccHHHHHHHHHcCCCcEEE
Confidence 99999999999999999875
No 87
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.67 E-value=1e-16 Score=145.17 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhc-CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590 383 TPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461 (482)
Q Consensus 383 ~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs 461 (482)
.+++.|++.+ | +++++.|++.... +++.. ..|++++. +|+|||++|+|+|+++|+ +++||+++||||
T Consensus 3 ~~~~~l~~~l----~-d~iiv~d~G~~~~---~~~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~ 70 (181)
T TIGR03846 3 DAIRAIASYL----E-DELVVSNIGVPSK---ELYAIRDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGS 70 (181)
T ss_pred HHHHHHHHhC----C-CCEEEecCCHhHH---HHHhhhcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchH
Confidence 3567777777 8 8999988443221 22333 46777774 899999999999999999 999999999999
Q ss_pred ccCChHHHHHHHHcC-cccccC
Q 011590 462 FGFSAVEVEVWLSCI-IMISSI 482 (482)
Q Consensus 462 f~~~~~eL~T~~r~~-l~i~~~ 482 (482)
|+|++|||+|++||+ +|+++|
T Consensus 71 f~m~~~el~ta~~~~~~pv~~v 92 (181)
T TIGR03846 71 LLMNLGVLPTIAAESPKNLILV 92 (181)
T ss_pred HHhhhhHHHHHHHhCCCCeEEE
Confidence 999999999999999 598764
No 88
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.65 E-value=1.5e-16 Score=144.39 Aligned_cols=88 Identities=26% Similarity=0.275 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHhccCCCCcEEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590 382 MTPMRIIRDAILGVGSPAPILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDG 460 (482)
..+++.|++.+ |+++|++.|+ .+..|.. .|.+++. ++|+|||++|+|+|+++|.|+++||+|+|||
T Consensus 13 ~~~~~~l~~~l----~~~~iv~~D~G~~~~~~~-------~~~~~~~--~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG 79 (178)
T cd02008 13 RPSFYALRKAF----KKDSIVSGDIGCYTLGAL-------PPLNAID--TCTCMGASIGVAIGMAKASEDKKVVAVIGDS 79 (178)
T ss_pred hHHHHHHHHHh----cCCeEEecCcCccccccc-------CChhhcc--ccccCccHHHHHhhHHhhCCCCCEEEEecCh
Confidence 44688888888 9999999994 4443331 2333332 5899999999999999999999999999999
Q ss_pred hccCC-hHHHHHHHHcCcccccC
Q 011590 461 GFGFS-AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 461 sf~~~-~~eL~T~~r~~l~i~~~ 482 (482)
+|+|+ .+||+|++||++|+++|
T Consensus 80 ~f~~~g~~eL~ta~~~~l~i~vv 102 (178)
T cd02008 80 TFFHSGILGLINAVYNKANITVV 102 (178)
T ss_pred HHhhccHHHHHHHHHcCCCEEEE
Confidence 99999 69999999999999875
No 89
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.62 E-value=5.4e-16 Score=142.25 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=67.4
Q ss_pred HHHHHHHHhcc--CCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh-
Q 011590 385 MRIIRDAILGV--GSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG- 461 (482)
Q Consensus 385 ~~~l~~~l~~~--~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs- 461 (482)
++.+.+.+.++ .|+|.+++.|.+...|..+ +++. +..+|+|||++|+|+|+++|+|+|+||+|+||||
T Consensus 11 ~~~~~~~~~~~~~~~~d~ii~~D~G~~~~~~~-~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~ 81 (193)
T cd03375 11 LKALAKALAELGIDPEKVVVVSGIGCSSRLPY-YFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDL 81 (193)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCChhceehh-hccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchH
Confidence 44455554331 2667888888544444322 2221 2235999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHcCcccccC
Q 011590 462 FGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 462 f~~~~~eL~T~~r~~l~i~~~ 482 (482)
|+|+.|||+|++||++||++|
T Consensus 82 f~m~~~eL~ta~~~~lpv~ii 102 (193)
T cd03375 82 AAIGGNHFIHAARRNIDITVI 102 (193)
T ss_pred hhccHHHHHHHHHhCCCeEEE
Confidence 689999999999999999865
No 90
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.59 E-value=4.5e-16 Score=146.76 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=75.7
Q ss_pred cccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHh----hhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590 381 FMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV----LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456 (482)
Q Consensus 381 ~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~----~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~ 456 (482)
...+++.|++.+ |+|.|++.|++....+..++ ++...+.+++.+ .++|||++|+|+|++++.|+++||+|
T Consensus 13 ~~~~~~~l~~~l----p~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~--~gsmG~GlpaAiGa~~a~p~r~VV~i 86 (235)
T cd03376 13 AALALRHVLKAL----GPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFEN--AAAVASGIEAALKALGRGKDITVVAF 86 (235)
T ss_pred cHHHHHHHHHHh----hcCeEEEeCCCcccccCCcCCCccccccceehhhcC--HHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 345678888888 99999999955443322222 334444555543 47999999999999999999999999
Q ss_pred Ecchh-ccCChHHHHHHHHcCcccccC
Q 011590 457 EGDSG-FGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 457 ~GDGs-f~~~~~eL~T~~r~~l~i~~~ 482 (482)
+|||+ |+|++|||+|++|+++||++|
T Consensus 87 ~GDG~~~~m~~~eL~ta~~~~~pv~~v 113 (235)
T cd03376 87 AGDGGTADIGFQALSGAAERGHDILYI 113 (235)
T ss_pred EcCchHHhhHHHHHHHHHHcCCCeEEE
Confidence 99999 589999999999999999875
No 91
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.59 E-value=2e-15 Score=136.72 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=69.0
Q ss_pred cHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhc-CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590 383 TPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461 (482)
Q Consensus 383 ~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~-~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs 461 (482)
.+++.|++.+ | ++++++|+++...+. +.. ..+++++ .+|+|||++|+|+|+++|.| ++|++++|||+
T Consensus 3 ~~~~~l~~~~----~-~~~vv~d~G~~~~~~---~~~~~~~~~~~---~~g~mG~~lp~AiGaala~~-~~vv~i~GDG~ 70 (179)
T cd03372 3 DAIKTLIADL----K-DELVVSNIGFPSKEL---YAAGDRPLNFY---MLGSMGLASSIGLGLALAQP-RKVIVIDGDGS 70 (179)
T ss_pred HHHHHHHHhC----C-CCeEEeCCCHhHHHH---HHccCcccccc---cccchhhHHHHHHHHHhcCC-CcEEEEECCcH
Confidence 3567777777 8 999999944432221 222 3456666 28999999999999999998 99999999999
Q ss_pred ccCChHHHHHHHHcCc-cccc
Q 011590 462 FGFSAVEVEVWLSCII-MISS 481 (482)
Q Consensus 462 f~~~~~eL~T~~r~~l-~i~~ 481 (482)
|+|+.|||+|++||++ |+++
T Consensus 71 f~m~~~el~ta~~~~~~~l~v 91 (179)
T cd03372 71 LLMNLGALATIAAEKPKNLII 91 (179)
T ss_pred HHhCHHHHHHHHHcCCCCEEE
Confidence 9999999999999995 5654
No 92
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.58 E-value=1.2e-15 Score=144.24 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHhccCC--CCcEEEeC-chhHHHHHHHhhhcCCCCeeecCC--CCCcccchHHHHHHHhhh-----CCCC
Q 011590 382 MTPMRIIRDAILGVGS--PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAG--TWGTMGVGLGYCIAAAIA-----CPER 451 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~~--~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~--~~g~mG~~l~~AiGaala-----~p~~ 451 (482)
.-+++.|.+.+ + ++.|++.| |.+..|..+ ++....++.++.+. +.|+|||++|+||||+++ .|++
T Consensus 14 ~~~~~~l~~~l----~~p~d~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~ 88 (237)
T cd02018 14 VTAVRVVLAAL----PAPEDTVIANSTGCSSVYAST-APFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKK 88 (237)
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCCccceeccc-CcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCC
Confidence 34577788888 7 89999999 555666544 32333445555543 459999999999999999 9999
Q ss_pred cEEEEEcchhcc-CChHHHHHHHHcCcccccC
Q 011590 452 LVVAVEGDSGFG-FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 452 ~vi~~~GDGsf~-~~~~eL~T~~r~~l~i~~~ 482 (482)
+||+|+|||+|+ |+.|+|+|++++++||++|
T Consensus 89 ~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~iv 120 (237)
T cd02018 89 DVVVIGGDGATYDIGFGALSHSLFRGEDITVI 120 (237)
T ss_pred cEEEEeCchHHHhccHHHHHHHHHcCCCeEEE
Confidence 999999999997 8999999999999999875
No 93
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.52 E-value=1.6e-14 Score=139.51 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=72.9
Q ss_pred CcccHHHHHHHHHhccC--CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCC-CcccchHHHHHHHhhhCCCCcEEEE
Q 011590 380 NFMTPMRIIRDAILGVG--SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAV 456 (482)
Q Consensus 380 ~~~~~~~~l~~~l~~~~--~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~~AiGaala~p~~~vi~~ 456 (482)
....+++.|++.+..+. |++.+++++.+.+..+. .|+.++++ |+||+++|+|+|+++|+|+++||++
T Consensus 24 g~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~----------~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i 93 (286)
T PRK11867 24 GDGSILAALQRALAELGLDPENVAVVSGIGCSGRLP----------GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV 93 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccC----------ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence 34457778888885432 67788888844322111 23444455 9999999999999999999999999
Q ss_pred Ecchh-ccCChHHHHHHHHcCcccccC
Q 011590 457 EGDSG-FGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 457 ~GDGs-f~~~~~eL~T~~r~~l~i~~~ 482 (482)
+|||+ |+|+.|||+|++|+|+||++|
T Consensus 94 ~GDG~~f~mg~~eL~tA~r~nl~i~vI 120 (286)
T PRK11867 94 TGDGDALAIGGNHFIHALRRNIDITYI 120 (286)
T ss_pred eCccHHHhCCHHHHHHHHHhCCCcEEE
Confidence 99995 999999999999999999875
No 94
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.48 E-value=7.2e-14 Score=135.52 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc-cCChHHHHHHHHc
Q 011590 397 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF-GFSAVEVEVWLSC 475 (482)
Q Consensus 397 ~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf-~~~~~eL~T~~r~ 475 (482)
|++.+++++.+.+.+..+ ++. ..+.+|+||+++|+|+|+++|+|+++||+++|||+| +|+.|||+|++|+
T Consensus 44 p~d~vivsdiG~s~~~~~-yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~tA~r~ 114 (301)
T PRK05778 44 PDKVVVVSGIGCSSKIPG-YFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFIHAGRR 114 (301)
T ss_pred CCCEEEEeCCcHhhhhhh-hcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHHHHHHH
Confidence 778888888554443333 222 122348999999999999999999999999999997 5999999999999
Q ss_pred CcccccC
Q 011590 476 IIMISSI 482 (482)
Q Consensus 476 ~l~i~~~ 482 (482)
|+||++|
T Consensus 115 nl~i~vI 121 (301)
T PRK05778 115 NIDITVI 121 (301)
T ss_pred CCCcEEE
Confidence 9999875
No 95
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.48 E-value=8.9e-14 Score=133.65 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=62.0
Q ss_pred CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCC-CcccchHHHHHHHhhhCCCCcEEEEEcchhcc-CChHHHHHHHH
Q 011590 397 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEGDSGFG-FSAVEVEVWLS 474 (482)
Q Consensus 397 ~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~-~~~~eL~T~~r 474 (482)
|++.+++++.+.+. ..+ .|+...++ +.||+++|+|+|+++|+|+++||+++|||+|+ |+.|||+|++|
T Consensus 27 p~d~iivsdiGc~~---------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r 96 (287)
T TIGR02177 27 PEQVVVVSGIGCSA---------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGR 96 (287)
T ss_pred CCCEEEEECCCccc---------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHH
Confidence 67888888844321 122 45554455 56899999999999999999999999999976 99999999999
Q ss_pred cCcccccC
Q 011590 475 CIIMISSI 482 (482)
Q Consensus 475 ~~l~i~~~ 482 (482)
+|+||++|
T Consensus 97 ~nl~I~vI 104 (287)
T TIGR02177 97 RNVDITVI 104 (287)
T ss_pred hCcCeEEE
Confidence 99999875
No 96
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.46 E-value=7.8e-14 Score=133.84 Aligned_cols=95 Identities=16% Similarity=0.052 Sum_probs=69.7
Q ss_pred CCCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEE
Q 011590 377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456 (482)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~ 456 (482)
..+.+..+++.|++.. +.+++.+++++.+....+.. + ..++.+ .++||+++|+|+|+++|+|+++||++
T Consensus 24 ~~i~~~~v~~al~e~~--~~~~d~ivvsdiGc~~~~~~-~---~~~~~~-----~~~~G~alPaAiGaklA~Pdr~VV~i 92 (277)
T PRK09628 24 DGVILKSIIRAIDKLG--WNMDDVCVVSGIGCSGRFSS-Y---VNCNTV-----HTTHGRAVAYATGIKLANPDKHVIVV 92 (277)
T ss_pred CchHHHHHHHHHHHhc--CCCCCEEEEeCcCHHHHhhc-c---CCCCce-----eeccccHHHHHHHHHHHCCCCeEEEE
Confidence 3455566677776651 11778888888444322111 1 122222 36999999999999999999999999
Q ss_pred Ecchhcc-CChHHHHHHHHcCcccccC
Q 011590 457 EGDSGFG-FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 457 ~GDGsf~-~~~~eL~T~~r~~l~i~~~ 482 (482)
+|||+|+ |..+|+.|++|+|+||++|
T Consensus 93 ~GDG~f~~~g~~el~ta~r~nlpi~iI 119 (277)
T PRK09628 93 SGDGDGLAIGGNHTIHGCRRNIDLNFI 119 (277)
T ss_pred ECchHHHHhhHHHHHHHHHhCcCeEEE
Confidence 9999997 5889999999999999875
No 97
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.44 E-value=2.9e-13 Score=129.65 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=67.5
Q ss_pred HHHHHHHHHhc--cCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590 384 PMRIIRDAILG--VGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461 (482)
Q Consensus 384 ~~~~l~~~l~~--~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs 461 (482)
++..+.+.+.. +.|++.+++.|.+....+.. ++.. ....+.||+++|+|+|+++|+|+++||+++|||+
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~-~~~~--------~~~~~~mG~alp~AiGaklA~pd~~VVai~GDG~ 89 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPH-YINV--------NGFHTLHGRAIPAATAVKATNPELTVIAEGGDGD 89 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHH-HccC--------CCCCcccccHHHHHHHHHHHCCCCcEEEEECchH
Confidence 34444444433 23778899998443332322 2221 1345779999999999999999999999999999
Q ss_pred ccCC-hHHHHHHHHcCcccccC
Q 011590 462 FGFS-AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 462 f~~~-~~eL~T~~r~~l~i~~~ 482 (482)
|+|. .|||+|++|+|+||++|
T Consensus 90 ~~~iG~~eL~tA~r~nl~i~~I 111 (280)
T PRK11869 90 MYAEGGNHLIHAIRRNPDITVL 111 (280)
T ss_pred HhhCcHHHHHHHHHhCcCcEEE
Confidence 9976 99999999999999875
No 98
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.42 E-value=7.6e-13 Score=115.89 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=79.1
Q ss_pred HHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC------CCCCCCCCCcccchHH-------HHhh
Q 011590 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG------KGLLPDTHPLAATAAR-------SLAI 275 (482)
Q Consensus 209 ~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~------~g~~~~~hp~~~G~~~-------~~~l 275 (482)
++++++|++||||+|++|+++.+.++.+++.+|+|++|+||++|+.+ ||++ +||.++|..+ .+.+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHHHHhccCchhhhc
Confidence 67889999999999999999998899999999999999999999998 8988 7788887653 3566
Q ss_pred ---hcCCEEEEecCccCcccccC--CCCCCCCCCcEEEEe
Q 011590 276 ---GQCDVALVVGARLNWLLHFG--EPPKWSKDVKFVLVD 310 (482)
Q Consensus 276 ---~~aDlvl~iG~~~~~~~~~g--~~~~~~~~~~ii~id 310 (482)
.++|+||.+|+++... ... ....|. +.|.|.+|
T Consensus 96 ~g~g~~DlvlfvG~~~y~~-~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 96 DGEGNYDLVLFLGIIYYYL-SQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred cCCCCcCEEEEeCCcchHH-HHHHHHHHhhc-CcEEEEec
Confidence 7999999999998421 111 123355 66776666
No 99
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.41 E-value=5.3e-13 Score=127.94 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHhccC--CCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcc
Q 011590 382 MTPMRIIRDAILGVG--SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~--~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GD 459 (482)
..++..|++.+..+. |++.+++++.+...+... ++.. ....++||+++|+|+|+++|+|+++||+++||
T Consensus 16 ~~il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~-~~~~--------~~~~~~~G~alp~A~GaklA~Pd~~VV~i~GD 86 (279)
T PRK11866 16 YGILEALRKALAELGIPPENVVVVSGIGCSSNLPE-FLNT--------YGIHGIHGRVLPIATGVKWANPKLTVIGYGGD 86 (279)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCchhhhhhh-hccC--------CCcccccccHHHHHHHHHHHCCCCcEEEEECC
Confidence 445667777775442 567788888443334433 2222 12369999999999999999999999999999
Q ss_pred h-hccCChHHHHHHHHcCcccccC
Q 011590 460 S-GFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 460 G-sf~~~~~eL~T~~r~~l~i~~~ 482 (482)
| +|+|+.|||.|++|+|+||++|
T Consensus 87 G~~f~ig~~eL~tA~rrn~~i~vI 110 (279)
T PRK11866 87 GDGYGIGLGHLPHAARRNVDITYI 110 (279)
T ss_pred hHHHHccHHHHHHHHHHCcCcEEE
Confidence 9 7999999999999999999865
No 100
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.40 E-value=1.5e-12 Score=114.76 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=80.1
Q ss_pred HHHHHHHHhCCCCEEEEcCCccc-cccHHHHHHHHHHhCCcEeeCCC------CCCCCCCCCCcccchHHH-------Hh
Q 011590 209 DKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPM------GKGLLPDTHPLAATAARS-------LA 274 (482)
Q Consensus 209 ~~~~~~L~~a~rpvil~G~g~~~-~~~~~~l~~lae~~g~pv~~t~~------~~g~~~~~hp~~~G~~~~-------~~ 274 (482)
++++++|++||||+|++|.++.. .++.+.+.+|+|++++||++|++ +||++|+ |+++|..++ +.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~lg~~~~~p~~e~ 102 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHELTNYLKDPNWKG 102 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHHHhhccCchhhh
Confidence 57889999999999999999987 77889999999999999999999 8999999 999887543 45
Q ss_pred h---hcCCEEEEecCccCccccc-CCCCCCCCCCcEEEEeC
Q 011590 275 I---GQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVDV 311 (482)
Q Consensus 275 l---~~aDlvl~iG~~~~~~~~~-g~~~~~~~~~~ii~id~ 311 (482)
+ .++|+||++|+++...+.. .....|.+ .|.|.||.
T Consensus 103 ~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~ 142 (171)
T PRK00945 103 LDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDR 142 (171)
T ss_pred hcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecC
Confidence 6 7899999999998632111 11234555 67766663
No 101
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.98 E-value=3.1e-09 Score=88.08 Aligned_cols=162 Identities=11% Similarity=0.061 Sum_probs=123.9
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
-+++.++++.+.|++.||+.+..+|.+....++.-+++ +.|..|.+..|..+...+.|-+.+.+||+..+..|| ++|
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsG--lGN 79 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSG--LGN 79 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccC--cch
Confidence 36789999999999999999999999999988887764 568777776677777778899999999999999876 459
Q ss_pred hHHHHHHhhh-CCCcEEEEeCCCCcccCCCCCCCC-c--CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590 91 GLAGLSNGMI-NTWPIVMISGSCDQKDFGRGDFQE-L--DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC 166 (482)
Q Consensus 91 ~~~ai~~A~~-~~~Pvl~i~g~~~~~~~~~~~~q~-~--d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv 166 (482)
.+++|+.-+. -++|+++|.+.+.....+-.+ |- + -.-.+.+..--..+.+.+|++..+++..|+..|..-. .||
T Consensus 80 siNal~SL~~ty~iPl~ml~ShRG~~~E~i~A-QVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s-~pv 157 (172)
T COG4032 80 SINALASLYVTYKIPLLMLASHRGVLKEGIEA-QVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENS-RPV 157 (172)
T ss_pred HHHHHHHHHHHhccchhhhhhccchhhcCCcc-ccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcC-Cce
Confidence 9999988554 799999999987544333221 11 0 1122334444457788899999999999999998643 678
Q ss_pred EEEcCcchhcc
Q 011590 167 YLDLPTDVLHQ 177 (482)
Q Consensus 167 ~l~iP~dv~~~ 177 (482)
-+.+...+|++
T Consensus 158 ~vlls~~~We~ 168 (172)
T COG4032 158 AVLLSPKYWEA 168 (172)
T ss_pred EEEechHHhhh
Confidence 88777666543
No 102
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.94 E-value=2.6e-08 Score=100.56 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=129.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
.-++|.++++......|++.+++.|+++..++.+.+.+ .+..++..-+|.+|..||.|-+.+..| ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~TaTSg~G 82 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK--AMTATSGPG 82 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC--eEeecCCCc
Confidence 35799999999999999999999999999999888753 357899999999999999999999777 778899999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhh-hc---cccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEA-VK---PFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~-~~---~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~ 162 (482)
++=++-++.-|-..++|++++..+++....|.....+ -|+... +. .+..-.....+++++.+...+||+.|...+
T Consensus 83 l~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~ 162 (376)
T PRK08659 83 FSLMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYR 162 (376)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998755444322211 233222 11 333456667888999999999999999876
Q ss_pred CceEEEEcCcc
Q 011590 163 PGGCYLDLPTD 173 (482)
Q Consensus 163 ~gPv~l~iP~d 173 (482)
-||.+....-
T Consensus 163 -~PViv~~D~~ 172 (376)
T PRK08659 163 -TPVIVLADEV 172 (376)
T ss_pred -CCEEEEechH
Confidence 6999988774
No 103
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.92 E-value=3e-08 Score=99.80 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=128.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
-++|.++++......|++.+.+.|+++..++.+.+.+ .|.+++.+-+|.+|..||.|-+.+..| ++..|||||+
T Consensus 5 ~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G~ 82 (375)
T PRK09627 5 ISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK--SMTASSGPGI 82 (375)
T ss_pred EechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC--EEeecCCchH
Confidence 4689999999999999999999999999988887753 478999999999999999999999777 7788999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhh-hh---ccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVE-AV---KPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~-~~---~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+=+.=++.-|...++|++++..+++....|.....+ -|... .. ..+.+-.....+++++.+...+||+.|...+
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~- 161 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFM- 161 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999998644444322221 12211 11 1334456667788899999999999999766
Q ss_pred ceEEEEcCcch
Q 011590 164 GGCYLDLPTDV 174 (482)
Q Consensus 164 gPv~l~iP~dv 174 (482)
-||.+....-+
T Consensus 162 ~PViv~~D~~l 172 (375)
T PRK09627 162 TPVFLLLDETV 172 (375)
T ss_pred CceEEecchHH
Confidence 79999888744
No 104
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.84 E-value=8.8e-08 Score=95.91 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=128.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
.-++|.++++......|++.+.+.|+++..++.+.+.+ .+..++..-+|.+|..||.|-+....| ++..|||||
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 82 (352)
T PRK07119 5 VLMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR--VMTSSSSPG 82 (352)
T ss_pred eeehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC--EEeecCcch
Confidence 35799999999999999999999999999998887743 467899999999999999999999777 667789999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhh---c-----cccceeeecCCcCcHHHHHHHHHHHhh
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV---K-----PFSKFAVKAKDITEVPKCVAQVLERAV 159 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~---~-----~~~k~~~~~~~~~~~~~~l~~A~~~a~ 159 (482)
++-+.-+|.-|...++|++++..+++....+. -..||..++ + ..-.-.....+++++.+....||+.|.
T Consensus 83 l~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~---t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE 159 (352)
T PRK07119 83 ISLKQEGISYLAGAELPCVIVNIMRGGPGLGN---IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLAD 159 (352)
T ss_pred HHHHHHHHHHHHHccCCEEEEEeccCCCCCCC---CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886433332 222443332 2 222345567788999999999999999
Q ss_pred cCCCceEEEEcCcch
Q 011590 160 SGRPGGCYLDLPTDV 174 (482)
Q Consensus 160 ~~~~gPv~l~iP~dv 174 (482)
..+ -||.+.....+
T Consensus 160 ~~~-~PViv~~D~~l 173 (352)
T PRK07119 160 KYR-NPVMVLGDGVL 173 (352)
T ss_pred HhC-CCEEEEcchhh
Confidence 866 69999888754
No 105
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.77 E-value=1.1e-07 Score=101.26 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=129.8
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
..++|.++++......|++.+++.|+++..++.+.|.+ .++.++..-+|.+|..||.|.+.+..| ++..|||||
T Consensus 194 ~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R--a~taTSg~G 271 (562)
T TIGR03710 194 ILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR--AMTATSGPG 271 (562)
T ss_pred EEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc--eeecCCCCC
Confidence 46799999999999999999999999999998888753 379999999999999999999998777 677899999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhc-------cccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK-------PFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~-------~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
+.=+.-+|..|...++|+|++..+++....|-.... +|..++. .+..-.....+++++.+...+||+.|..
T Consensus 272 l~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~--eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~ 349 (562)
T TIGR03710 272 FALMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKT--EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEK 349 (562)
T ss_pred hhHhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCc--cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999975544432222 2222211 1223455667888999999999999998
Q ss_pred CCCceEEEEcCcchhc
Q 011590 161 GRPGGCYLDLPTDVLH 176 (482)
Q Consensus 161 ~~~gPv~l~iP~dv~~ 176 (482)
.+ -||.+....-+..
T Consensus 350 ~~-~PViv~~D~~l~~ 364 (562)
T TIGR03710 350 YQ-TPVIVLSDQYLAN 364 (562)
T ss_pred hc-CCEEEEechHHhC
Confidence 65 8999988877643
No 106
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75 E-value=2.3e-07 Score=93.78 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=124.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh------CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~------~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.-++|.++++......|++.+++.|+++..++.+.+.+ .+.+++.+-+|.+|..||.|-+.+..| +...|||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR--a~TaTSg 81 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR--AFTATSA 81 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeeCc
Confidence 45799999999999999999999999998888887752 258888999999999999999999877 7778999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhh-ccccce-eeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV-KPFSKF-AVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~-~~~~k~-~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
||+.=+.-+|..|-..++|+|+.-.++.-.. +-.... ||..++ .--+.| .....+++++.+...+||+.|..-+
T Consensus 82 ~Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~~~~~--~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~- 157 (390)
T PRK08366 82 QGLALMHEMLHWAAGARLPIVMVDVNRAMAP-PWSVWD--DQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVN- 157 (390)
T ss_pred ccHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CCCCcc--hhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999999998775442 222211 232211 112233 3345788899999999999998765
Q ss_pred ceEEEEcCcchh
Q 011590 164 GGCYLDLPTDVL 175 (482)
Q Consensus 164 gPv~l~iP~dv~ 175 (482)
-||.+....-+.
T Consensus 158 ~PViv~~Dg~~~ 169 (390)
T PRK08366 158 LPAMVVESAFIL 169 (390)
T ss_pred CCEEEEecCccc
Confidence 789888765433
No 107
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.67 E-value=6.1e-07 Score=90.96 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=124.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh------CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ------LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~------~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.-++|.++++......|++.+++.|+++..++.+.+.+ .+.+++.+-+|.+|..||.|-+.+..| +...|||
T Consensus 5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR--a~TaTS~ 82 (394)
T PRK08367 5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR--TFTATAS 82 (394)
T ss_pred EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC--eEeeecc
Confidence 45799999999999999999999999998888887753 257899999999999999999999777 7778999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhh--hhccccceeeecCCcCcHHHHHHHHHHHhhcCC-
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE--AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR- 162 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~--~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~- 162 (482)
||+.=+.-.|..|...++|+++..+++.... ....+. ||.. ..+..........+++++.+..-.||+.|...+
T Consensus 83 ~Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~i~~--d~~D~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~ 159 (394)
T PRK08367 83 QGLALMHEVLFIAAGMRLPIVMAIGNRALSA-PINIWN--DWQDTISQRDTGWMQFYAENNQEALDLILIAFKVAEDERV 159 (394)
T ss_pred chHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCCcCc--chHHHHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999997775443 212111 2222 223333333344678889999999999998643
Q ss_pred CceEEEEcCcchhc
Q 011590 163 PGGCYLDLPTDVLH 176 (482)
Q Consensus 163 ~gPv~l~iP~dv~~ 176 (482)
.-||.+....-...
T Consensus 160 ~~Pviv~~Dgf~~s 173 (394)
T PRK08367 160 LLPAMVGFDAFILT 173 (394)
T ss_pred CCCEEEEechhhhc
Confidence 25888887765443
No 108
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.64 E-value=1.7e-07 Score=88.06 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=108.7
Q ss_pred HHHhcCCCEEEecCCcChHHHHHHHHh----CCC--cEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHH
Q 011590 23 SLSLFGATHMFGVVGIPVTSLANRAVQ----LGV--RFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLS 96 (482)
Q Consensus 23 ~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i--~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~ 96 (482)
.....|++.+++.|+++..++++.+.+ .+. +++..-+|.+|..||.|.+....| ++..|||||+.=+.-+|.
T Consensus 2 ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r--a~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 2 GAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR--AMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT----EEEEEECCHHHHHCCCHH
T ss_pred HHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc--eEEeecCCcccccHhHHH
Confidence 356789999999999988888877642 344 899999999999999999998665 556899999999999999
Q ss_pred HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 97 ~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
.+-..++|++++..++.....|....++.+-....+....-.....++.++.+....||+.|..-+ -||.+....-+.
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~-~PViv~~Dg~~~ 157 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQ-TPVIVLFDGFLC 157 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHT-SEEEEEEECCCC
T ss_pred HHHHcCCCEEEEEEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHC-CCEEEEechhhh
Confidence 999999999999999876655444445544444555555556667788999999999999999866 899998877665
No 109
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=98.64 E-value=1.9e-08 Score=96.69 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=47.0
Q ss_pred CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccC--ChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGF--SAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~--~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|++++.+ +++|++++|||+|++ +.++|+|+.++++|.++
T Consensus 103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li 160 (255)
T cd02012 103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160 (255)
T ss_pred CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEE
Confidence 46999999999999999965 899999999999998 58899999999998544
No 110
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.63 E-value=7.9e-07 Score=90.86 Aligned_cols=159 Identities=14% Similarity=0.028 Sum_probs=125.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh---C---CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---L---GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~---~---~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.-++|.++++....+.|++.++|.|+++..++.+.+.+ + +..+|..-+|.+|..||.|-+....| ++..|||
T Consensus 11 ~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR--a~TaTS~ 88 (407)
T PRK09622 11 EVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR--VATATSS 88 (407)
T ss_pred eecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC--EEeecCc
Confidence 46799999999999999999999999998888888753 2 36789999999999999999998776 7778999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhh--hccccceeeecCCcCcHHHHHHHHHHHhhcCC-
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA--VKPFSKFAVKAKDITEVPKCVAQVLERAVSGR- 162 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~--~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~- 162 (482)
||+.=+.-+|..|...++|++++..++.... .-. -..||-.+ .+.-........+++++.+....||+.|...+
T Consensus 89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~-~~~--i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~ 165 (407)
T PRK09622 89 QGLALMVEVLYQASGMRLPIVLNLVNRALAA-PLN--VNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKV 165 (407)
T ss_pred chHHHHhhHHHHHHHhhCCEEEEEeccccCC-CcC--CCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998886432 111 11233222 23333334456788899999999999998752
Q ss_pred CceEEEEcCcchh
Q 011590 163 PGGCYLDLPTDVL 175 (482)
Q Consensus 163 ~gPv~l~iP~dv~ 175 (482)
+-||.+....-+.
T Consensus 166 ~~Pviv~~Dg~~~ 178 (407)
T PRK09622 166 RLPVIVNQDGFLC 178 (407)
T ss_pred CCCEEEEechhhh
Confidence 3899988877653
No 111
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.58 E-value=3.2e-08 Score=98.74 Aligned_cols=53 Identities=13% Similarity=-0.018 Sum_probs=47.8
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~ 482 (482)
..+.||+++|.|+|++++. |++.|++++|||+|+|+ .++|.|++++++|++.|
T Consensus 120 ~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~V 178 (341)
T TIGR03181 120 PNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFF 178 (341)
T ss_pred CCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEE
Confidence 3477999999999998886 89999999999999999 58899999999998865
No 112
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=98.54 E-value=5.8e-08 Score=95.20 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~ 482 (482)
..|+||+++|.|+|+++|. +++.||+++|||+|+|.. ++|+|+.++++|++.|
T Consensus 102 ~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 102 GNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 4699999999999999985 789999999999999973 6799999999999864
No 113
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=98.37 E-value=2.3e-07 Score=92.41 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=46.8
Q ss_pred CCCCcccchHHHHHHHhhhC-----------CCCcEEEEEcchhccCChH---HHHHHHHcCcccccC
Q 011590 429 GTWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV---EVEVWLSCIIMISSI 482 (482)
Q Consensus 429 ~~~g~mG~~l~~AiGaala~-----------p~~~vi~~~GDGsf~~~~~---eL~T~~r~~l~i~~~ 482 (482)
+++|+||+++|.|+|+++|. |++.|++++|||+|+ ..+ +|.|+.++++|++.|
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LPvifv 191 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLPIIFV 191 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCCEEEE
Confidence 35799999999999999994 789999999999997 545 699999999998864
No 114
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.32 E-value=3.2e-07 Score=90.62 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=47.9
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~ 482 (482)
.+|+||+++|.|+|+++|. +++.|++++|||+|++.. .+|.++.++++|++.|
T Consensus 108 ~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~v 166 (315)
T TIGR03182 108 GHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFV 166 (315)
T ss_pred CcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEE
Confidence 5699999999999999997 789999999999998765 6799999999998764
No 115
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.24 E-value=5e-05 Score=78.90 Aligned_cols=161 Identities=20% Similarity=0.081 Sum_probs=112.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-----CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-----GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-----~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp 86 (482)
+-+-+-++|++.+-+.||.++-|+||++..+|++.|.+. ++.+=-..||-.|.-+|.|-+.. |.-+++..- +|
T Consensus 14 ~~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~GA~~~-G~ral~~mK-hV 91 (640)
T COG4231 14 RLLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAGASYA-GVRALVTMK-HV 91 (640)
T ss_pred HHhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHHhhhc-CceeeEEec-cc
Confidence 345688999999999999999999999999999998642 36666789999999999995554 544444433 56
Q ss_pred hhHhhHHHHHHhhhC--CCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCc
Q 011590 87 GCVHGLAGLSNGMIN--TWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPG 164 (482)
Q Consensus 87 G~~N~~~ai~~A~~~--~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~g 164 (482)
|+-=+.-.+.++-.. +=-+|+|+|+-+.....+ .+.|-...++.---+..++.++.++.+.+.+||....... -
T Consensus 92 GlNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~SSq---neqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~-~ 167 (640)
T COG4231 92 GLNVASDPLMSLAYAGVTGGLVIVVADDPGMHSSQ---NEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSG-L 167 (640)
T ss_pred ccccchhhhhhhhhcCccccEEEEEccCCCccccc---chhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhC-C
Confidence 643333344443332 335888888765543222 1224444555555677788899999999999999887655 6
Q ss_pred eEEEEcCcchhccc
Q 011590 165 GCYLDLPTDVLHQT 178 (482)
Q Consensus 165 Pv~l~iP~dv~~~~ 178 (482)
||-|..-.++-...
T Consensus 168 pVilr~ttr~~h~~ 181 (640)
T COG4231 168 PVILRTTTRVSHSR 181 (640)
T ss_pred CEEEEEEeeeeccc
Confidence 88877766664433
No 116
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.22 E-value=4.5e-05 Score=76.74 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=127.4
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
..++|.++++......|++.+.+.|=++..++.+.+.+ .+.+++...+|.+|..|+.|-+.+.-| +.-.|||||
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~aGar--~~TaTSg~G 81 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYAGAR--AFTATSGQG 81 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhhCcc--eEeecCCcc
Confidence 46789999999999999999999999988888877643 479999999999999999999998666 567799999
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCc-CHhhhhc-cccceeeecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL-DQVEAVK-PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG 165 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~-d~~~~~~-~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gP 165 (482)
++=+..++.-|...++|+++...+++....+...+++. |...+.. .+...... +.+++.....+||+.|...+ -|
T Consensus 82 l~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~-~P 158 (365)
T COG0674 82 LLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARDTGFPILVSA--SVQEAFDLTLLAFNIAEKVL-TP 158 (365)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHHHccCceEEeec--cHHHHHHHHHHHHHHHHHhc-CC
Confidence 99999999999999999999999998776655433321 2222111 12233322 67888888899999999865 78
Q ss_pred EEEEcCcchhccc
Q 011590 166 CYLDLPTDVLHQT 178 (482)
Q Consensus 166 v~l~iP~dv~~~~ 178 (482)
|.+....-+..-.
T Consensus 159 vi~~~D~~~~~h~ 171 (365)
T COG0674 159 VIVLLDGFLASHE 171 (365)
T ss_pred EEEeeccchhcCc
Confidence 9888665554333
No 117
>PRK05899 transketolase; Reviewed
Probab=98.21 E-value=8.8e-07 Score=95.94 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=46.9
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCCh-HH-HHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSA-VE-VEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~-~e-L~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++++|||+|++.. +| |.|+.+++||.++
T Consensus 116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li 183 (624)
T PRK05899 116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLI 183 (624)
T ss_pred CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEE
Confidence 47999999999999999976 78999999999999997 55 9999999998544
No 118
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=98.19 E-value=8.7e-07 Score=81.38 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~ 482 (482)
..|++|.++|.|+|+|+|.+ +++|++++|||+|+ +...+|.++.+++.|++.|
T Consensus 73 ~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~v 131 (195)
T cd02007 73 GTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVI 131 (195)
T ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEE
Confidence 46999999999999999965 78999999999999 8889999999999998764
No 119
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.05 E-value=0.00061 Score=77.33 Aligned_cols=162 Identities=13% Similarity=0.084 Sum_probs=117.0
Q ss_pred cCCcHHHHHHHHHHh-------cCC---CEEEecCCcChHHHHHHHHh-------CCCcEEecCchHHHHHHHHHHHhH-
Q 011590 12 AQIDGNTLAAKSLSL-------FGA---THMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGYL- 73 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~-------~Gv---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~~~E~~A~~~A~g~ar~- 73 (482)
.-++|.|+|++.+-+ .|+ ..+-|+||++..++.+.|.+ .+|.+-...||-.|+-+|.|-.+.
T Consensus 18 ~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~ 97 (1159)
T PRK13030 18 IFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVE 97 (1159)
T ss_pred EeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccc
Confidence 467999999999999 999 99999999999999998853 348888899999999999998843
Q ss_pred -------hCCcEEEEEcCChhhHhhHHHHHHhhhCCC----cEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC
Q 011590 74 -------TGKPGILLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK 142 (482)
Q Consensus 74 -------tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~----Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~ 142 (482)
.|..+++ .--|||+-=+.-++..+-+.++ -||+|+|+=+.....+..+ |-.-.++...--...+.
T Consensus 98 ~~~~~~~~Gv~~l~-~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~SSq~eq---dSr~~~~~a~iPvl~Ps 173 (1159)
T PRK13030 98 ADPERTVDGVFAMW-YGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCVSSSMPH---QSDFALIAWHMPVLNPA 173 (1159)
T ss_pred ccCCccccceEEEE-ecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCccCcCHH---HHHHHHHHcCCceeCCC
Confidence 3333332 3358887666677776555555 7999999865544333221 22223333334556677
Q ss_pred CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590 143 DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (482)
Q Consensus 143 ~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~ 178 (482)
++.++.+....||....... -||-+-.-.++....
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~-~pV~lr~~t~v~h~~ 208 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSG-AWVGFKAISETVESG 208 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeee
Confidence 88899999999998887654 577777766665443
No 120
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=97.92 E-value=1.1e-05 Score=82.61 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=46.7
Q ss_pred CCCCcccchHHHHHHHhhh-----------CCCCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590 429 GTWGTMGVGLGYCIAAAIA-----------CPERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 429 ~~~g~mG~~l~~AiGaala-----------~p~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~ 482 (482)
+.++.||+++|.|+|+++| .+++.|++++|||+++.. ..+|.++.+++|||+.|
T Consensus 191 g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfV 257 (433)
T PLN02374 191 GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFV 257 (433)
T ss_pred CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEE
Confidence 4568999999999999999 367899999999999755 23899999999998764
No 121
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.91 E-value=6.6e-06 Score=88.34 Aligned_cols=53 Identities=21% Similarity=0.131 Sum_probs=48.0
Q ss_pred CCCcccchHHHHHHHhhhC-----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC-----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~-----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~ 482 (482)
..|++|.++|.|+|+++|. ++++|++++|||+++ |+.++|+++.+++.|+++|
T Consensus 115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~I 174 (580)
T PRK05444 115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVI 174 (580)
T ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEE
Confidence 4699999999999999985 678999999999995 9999999999999998654
No 122
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.88 E-value=0.0007 Score=76.65 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=114.6
Q ss_pred cCCcHHHHHHHHHHh-------cCC---CEEEecCCcChHHHHHHHHh-------CCCcEEecCchHHHHHHHHHHHh--
Q 011590 12 AQIDGNTLAAKSLSL-------FGA---THMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGY-- 72 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~-------~Gv---~~vFgvpG~~~~~l~~al~~-------~~i~~v~~~~E~~A~~~A~g~ar-- 72 (482)
.-++|-|+|++.+-+ .|+ ..|-|+||++..++.+.|.+ .+|.+-...||-.|+-++-|--+
T Consensus 26 ~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~ 105 (1165)
T PRK09193 26 VFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN 105 (1165)
T ss_pred eeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence 357999999999988 999 99999999999999988853 34888889999999999865533
Q ss_pred ------HhCCcEEEEEcCChhhHhhHHHHHHhhhCCC----cEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC
Q 011590 73 ------LTGKPGILLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK 142 (482)
Q Consensus 73 ------~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~----Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~ 142 (482)
..|..+++. --|||+-=+.-++..+-..++ -||+++|+=+.....+..+| -.-.++..---...+.
T Consensus 106 ~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~SSq~eqd---Sr~~~~~a~iPvl~Ps 181 (1165)
T PRK09193 106 LFPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAKSSTLPHQ---SEHAFKAAGMPVLFPA 181 (1165)
T ss_pred cccceeeccceEEEe-cCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCccccchhh---hHHHHHHcCCceeCCC
Confidence 445444433 358887666667765555544 79999998655543333222 2223333333455667
Q ss_pred CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590 143 DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (482)
Q Consensus 143 ~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~ 178 (482)
++.++.+....||....... -||-+-.-.++....
T Consensus 182 ~~qE~~d~~~~g~~lSr~~g-~pV~lr~~t~v~h~~ 216 (1165)
T PRK09193 182 NVQEILDYGLHGWAMSRYSG-LWVGMKTVTDVVESS 216 (1165)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCEEEEEEEEEeeee
Confidence 88888888889998887654 577777766665443
No 123
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.75 E-value=0.0031 Score=71.49 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=111.1
Q ss_pred CCcHHHHHHHHH-------HhcCCC---EEEecCCcChHHHHHHHHh-------CCCcEEecCchHHHHHHHHHHHhH--
Q 011590 13 QIDGNTLAAKSL-------SLFGAT---HMFGVVGIPVTSLANRAVQ-------LGVRFIAFHNEQSAGYAASAYGYL-- 73 (482)
Q Consensus 13 ~~~~~~~l~~~L-------~~~Gv~---~vFgvpG~~~~~l~~al~~-------~~i~~v~~~~E~~A~~~A~g~ar~-- 73 (482)
-++|.|+|++.+ .+.|++ .|-|+||++..++.+.|.+ .+|.+-...||-.|+-|.-|--++
T Consensus 30 ~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~Gsq~~e~ 109 (1186)
T PRK13029 30 YISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWGSQQLEL 109 (1186)
T ss_pred eecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhhhhhccc
Confidence 579999999999 999999 9999999999999998843 358888899999998888887653
Q ss_pred ------hCCcEEEEEcCChhhHhhHHHHHHhh---h-CCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCC
Q 011590 74 ------TGKPGILLTVSGPGCVHGLAGLSNGM---I-NTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKD 143 (482)
Q Consensus 74 ------tgk~~v~~~t~GpG~~N~~~ai~~A~---~-~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~ 143 (482)
.|..+++ .--|||+-=+--++..+- . -+=-||+++|+=+.....+..+| -.-.++..---...+.+
T Consensus 110 ~~~a~~dGv~~lw-ygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SSq~eqd---Sr~~~~~a~iPvl~Ps~ 185 (1186)
T PRK13029 110 DPGAKRDGVFGMW-YGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSSSVAHQ---SDHTFIAWGIPVLYPAS 185 (1186)
T ss_pred ccceeeccceEEE-ecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccccCHHH---HHHHHHHcCCceeCCCC
Confidence 2322332 235788655555554333 2 23468889988655443332222 22233333334556677
Q ss_pred cCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590 144 ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (482)
Q Consensus 144 ~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~ 178 (482)
+.++.+....||....... -||-+-.-.++....
T Consensus 186 ~qE~~d~~~~a~~lSr~~g-~~V~lr~~t~v~~s~ 219 (1186)
T PRK13029 186 VQDYLDYGLHGWAMSRYSG-LWVGMKCVTEVVEST 219 (1186)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeeecc
Confidence 8888888889998887654 578877777776554
No 124
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.74 E-value=2.5e-05 Score=84.53 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=48.2
Q ss_pred CCCcccchHHHHHHHhhhCCCCcEEEEEcchhc--cCChHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF--GFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf--~~~~~eL~T~~r~~l~i~~~ 482 (482)
++|+||+++|+|+|++++.++++|++++|||+| .+...+++++.++++|+++|
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I 175 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVI 175 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999999999999999999 66779999999999998764
No 125
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.71 E-value=0.00076 Score=77.60 Aligned_cols=152 Identities=16% Similarity=0.098 Sum_probs=110.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHH---HhC---C-----CcEEecCchHHHHHHHHHHHhHhCCcEEEE
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRA---VQL---G-----VRFIAFHNEQSAGYAASAYGYLTGKPGILL 81 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al---~~~---~-----i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~ 81 (482)
.|+|.++++..... |.+.+|+.|=++..++.+.+ ... + .+++...+|.+|+.|+.|.+.. |.. +..
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~a-Gar-a~T 79 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQT-GAL-TTT 79 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhhc-CCC-EEE
Confidence 58999999998877 99999999976665555554 321 1 2799999999999999997765 543 446
Q ss_pred EcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC---CCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHH
Q 011590 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG---RGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLER 157 (482)
Q Consensus 82 ~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~---~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~ 157 (482)
.|||+|++-+...|+.+...++|+|+...++.....+ .++++++. ..|. +.|.. ...++.++.+..-.|++.
T Consensus 80 ~TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~Dv~---~~R~-~G~ivl~s~svQEa~D~al~A~~l 155 (1165)
T TIGR02176 80 FTASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQDVM---AARQ-TGFAMLASSSVQEVMDLALVAHLA 155 (1165)
T ss_pred ecChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchHHH---Hhhc-CCeEEEeCCCHHHHHHHHHHHHHH
Confidence 7999999999999988777799999999998555332 22233321 2233 33433 335677888888899999
Q ss_pred hhcCCCceEEEEcCc
Q 011590 158 AVSGRPGGCYLDLPT 172 (482)
Q Consensus 158 a~~~~~gPv~l~iP~ 172 (482)
|...+ -||.+...-
T Consensus 156 Ae~~~-~Pvi~~~Dg 169 (1165)
T TIGR02176 156 TIEAR-VPFMHFFDG 169 (1165)
T ss_pred HHhcC-CCEEEEecC
Confidence 98765 688776654
No 126
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=97.63 E-value=0.00019 Score=61.16 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC--Ccccch-HHHHhh----------
Q 011590 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH--PLAATA-ARSLAI---------- 275 (482)
Q Consensus 209 ~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h--p~~~G~-~~~~~l---------- 275 (482)
+-++.+|++||||++++|..+...+-.|.+.+|+|+.++|+++|..+.+.+-+.. .-|.+. ....++
T Consensus 26 ~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg 105 (170)
T COG1880 26 EVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDG 105 (170)
T ss_pred HHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCC
Confidence 3456899999999999999998667778899999999999999987654333221 001111 111122
Q ss_pred -hcCCEEEEecCccC
Q 011590 276 -GQCDVALVVGARLN 289 (482)
Q Consensus 276 -~~aDlvl~iG~~~~ 289 (482)
.+.|+||++|+...
T Consensus 106 ~g~yDlviflG~~~y 120 (170)
T COG1880 106 NGNYDLVIFLGSIYY 120 (170)
T ss_pred CCCcceEEEEeccHH
Confidence 35899999998764
No 127
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=97.11 E-value=0.0008 Score=59.44 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC-CCCCCCCCCCCcccchH--HHHh---------
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP-MGKGLLPDTHPLAATAA--RSLA--------- 274 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~-~~~g~~~~~hp~~~G~~--~~~~--------- 274 (482)
..+.++++|++||||++++|..+......+.........++|++.|. ..+++ ++..|-| +.. .+++
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~~~~~~l~~p~w~g~~ 100 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKIEPENELNDPHWNGTD 100 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HHHHHHHCCSTT--TTT
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccccHHHhcCCCCCCccc
Confidence 44789999999999999999999765545667777778999999887 56664 3333433 321 1211
Q ss_pred -hhcCCEEEEecCccCccccc-CCCCCCCCCCcEEEEeC
Q 011590 275 -IGQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVDV 311 (482)
Q Consensus 275 -l~~aDlvl~iG~~~~~~~~~-g~~~~~~~~~~ii~id~ 311 (482)
=.+.|++|++|...-..+.. .-...|.+..+++.++.
T Consensus 101 g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~ 139 (167)
T PF02552_consen 101 GHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDR 139 (167)
T ss_dssp SS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SS
T ss_pred cCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEecc
Confidence 13799999999765321100 00122445567766665
No 128
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=96.87 E-value=0.0019 Score=63.26 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=81.8
Q ss_pred CEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--C-CCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC
Q 011590 221 PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--K-GLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP 297 (482)
Q Consensus 221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~-g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~ 297 (482)
.|+-.|.|....+..+.+++||+.+|..|-+|... . |-+| |...+|..+... ..||-|++|.+=..+...|
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p--~~~QIGqTGk~V--~P~lYiA~GISGaiQH~~G-- 270 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWME--HERYVGISNLML--KPELYLAVGISGQIQHMVG-- 270 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCC--HHheecCCCCCc--CccEEEEEccccHHHHHhh--
Confidence 34444556555577888999999999999988653 2 3555 345566543211 4699999998765444333
Q ss_pred CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 298 ~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
......||-||.||+..=+...|..+++|+.++|++|.+.++
T Consensus 271 --m~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 271 --ANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred --cccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 344567999999998776666799999999999999999874
No 129
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.87 E-value=0.04 Score=48.63 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH-hCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~-~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
.++.|.+.+++.. +.++.............+. +..-+++ ..-.|++.+.+|.|.+.. |+..++... ..=...+..
T Consensus 3 ~~~~l~~~~~~~~-~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~f~~ra~d 79 (156)
T cd07033 3 FGEALLELAKKDP-RIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALH-GLKPFVSTF-SFFLQRAYD 79 (156)
T ss_pred HHHHHHHHHhhCC-CEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHC-CCeEEEEEC-HHHHHHHHH
Confidence 3456666655543 3333333311112222232 2233555 357899999999999976 444444433 445666677
Q ss_pred HHH-HhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 94 GLS-NGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 94 ai~-~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
.|. .+-..+.||+++........ ..-..||..++..+++.+-.... .+.+++++..+++.|++ . ++|+|+.+
T Consensus 80 qi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~-~~P~~irl 154 (156)
T cd07033 80 QIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE----Y-DGPVYIRL 154 (156)
T ss_pred HHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh----C-CCCEEEEe
Confidence 777 67788999999988554433 22335778888999999876554 45566777777766664 2 37999988
Q ss_pred Cc
Q 011590 171 PT 172 (482)
Q Consensus 171 P~ 172 (482)
|.
T Consensus 155 ~~ 156 (156)
T cd07033 155 PR 156 (156)
T ss_pred eC
Confidence 73
No 130
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=96.82 E-value=0.0026 Score=62.35 Aligned_cols=112 Identities=17% Similarity=0.112 Sum_probs=80.5
Q ss_pred EEEE-cCCccccccHHHHHHHHHHhCCcEeeCCCC---CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCC
Q 011590 222 LIVF-GKGAAYARAEGELKKLVESTGIPFLPTPMG---KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEP 297 (482)
Q Consensus 222 vil~-G~g~~~~~~~~~l~~lae~~g~pv~~t~~~---~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~ 297 (482)
+|+. |.|....+..+.+++||+.+|.-|-+|... .|-+|.+ ..+|..+.. =..||-|++|.+=..+...|
T Consensus 196 vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqTGk~--V~P~lYiA~GISGAiQH~aG-- 269 (312)
T PRK11916 196 RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVSGVL--LKSDLYLTLGISGQIQHMVG-- 269 (312)
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCCCCC--cCccEEEEeccccHHHHHhh--
Confidence 4444 555554467889999999999999988652 2456553 456643321 14699999998765443333
Q ss_pred CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 298 PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 298 ~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
......||-||.|++..=+...|..+++|+.++|++|.+.++
T Consensus 270 --m~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 270 --GNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred --cccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 344567999999998776666799999999999999998874
No 131
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=96.79 E-value=0.0027 Score=63.29 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=80.9
Q ss_pred EEEE-cCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590 222 LIVF-GKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP 298 (482)
Q Consensus 222 vil~-G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~ 298 (482)
+|+. |.|....+..+.+++||+.+|.-|-+|... .|-+|. ...+|..+ ..=..||-|++|.+=..+...|
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~--~~QIGqTG--k~V~P~lYIA~GISGAiQH~~G--- 311 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPN--DLQVGQTG--KIVAPELYIAVGISGAIQHLAG--- 311 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCCh--HheeccCC--CCcCCcEEEEEecchHHHHHhh---
Confidence 4555 455554467889999999999999887542 355544 34455433 1125799999998755443333
Q ss_pred CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
......||-||.|++..=+...|..|++|+.++|++|.+.+++
T Consensus 312 -m~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 312 -MKDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred -cccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 3445679999999987656667999999999999999999864
No 132
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=96.68 E-value=0.0044 Score=60.33 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=81.3
Q ss_pred EEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCC
Q 011590 222 LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPK 299 (482)
Q Consensus 222 vil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~ 299 (482)
++-.|.|....+..+.+.+||+.+|+-|-+|... .|-+|++ +++|..+. .=..||-|++|.+---+...|
T Consensus 198 VVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d--~QVGqTGk--~V~P~LYIA~GISGAiQHlaG---- 269 (313)
T COG2025 198 VVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPND--RQVGQTGK--TVAPKLYIALGISGAIQHLAG---- 269 (313)
T ss_pred EEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCcc--ceecCCCc--EecccEEEEEecccHHHHHhh----
Confidence 4444555554466777899999999999988653 4666655 45664331 225799999998765443333
Q ss_pred CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 300 WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 300 ~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
......||-||.|+...=+...|..+++|+..++++|.+.+++
T Consensus 270 m~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 270 MKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred cccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 2344678889999877766667999999999999999999864
No 133
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.60 E-value=0.02 Score=55.75 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHH-------------
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAAR------------- 271 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~------------- 271 (482)
+++++++++.|.+||||+++-++... -++.+.-.+|+|.+|+ ++.+ .-..+.|...
T Consensus 66 deAie~Aa~ILv~aKrPllyg~s~ts-cEA~~~gielaE~~ga-viD~---------~asvchGp~~~alqe~g~p~~Tl 134 (429)
T COG1029 66 DEAIEKAAEILVNAKRPLLYGWSSTS-CEAQELGIELAEKLGA-VIDS---------NASVCHGPSVLALQEAGKPTATL 134 (429)
T ss_pred HHHHHHHHHHHHhccCceEeccccch-HHHHHHHHHHHHHhCc-EecC---------CCccccchHHHHHHhcCCcccch
Confidence 46899999999999999999887763 3777888999999998 3333 3333444321
Q ss_pred HHhhhcCCEEEEecCccCcc--------ccc--CCCCCC-CCCCcEEEEeCCchhhc---ccCCceeEeccHHHHHHHHH
Q 011590 272 SLAIGQCDVALVVGARLNWL--------LHF--GEPPKW-SKDVKFVLVDVCKEEIE---LRKPHLGLVGDAKKVLEMIN 337 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~--------~~~--g~~~~~-~~~~~ii~id~d~~~~~---~~~~~~~i~~D~~~~l~~L~ 337 (482)
.+.=+.||+|+--|+++-.. ..+ |++..- ..+.++|.||+-..... .++..+..-+| .+++.+|.
T Consensus 135 gevKNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sD-yelisAl~ 213 (429)
T COG1029 135 GEVKNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSD-YELISALR 213 (429)
T ss_pred hhhcccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCc-HHHHHHHH
Confidence 13345799999999887431 111 111110 24567888888654432 22223333345 45677777
Q ss_pred HhhhcC
Q 011590 338 KEIKDE 343 (482)
Q Consensus 338 ~~l~~~ 343 (482)
..+...
T Consensus 214 ~~l~G~ 219 (429)
T COG1029 214 AALHGK 219 (429)
T ss_pred HHhcCC
Confidence 776544
No 134
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.48 E-value=0.004 Score=60.54 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=62.7
Q ss_pred HHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhC-----CCCcEEEEE
Q 011590 384 PMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC-----PERLVVAVE 457 (482)
Q Consensus 384 ~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~-----p~~~vi~~~ 457 (482)
.++.+.+.+ .+++|++.+ |..+...+ .++.+ .+-.+.....+|.+.+.|.|+++|. ++..|+++.
T Consensus 29 ~~~~l~~~l----g~~~v~~~~iGC~~~~~g--~~p~~---~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~ 99 (300)
T PRK11864 29 GLRYLLKAL----GEKTVLVIPASCSTVIQG--DTPKS---PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWA 99 (300)
T ss_pred HHHHHHHHh----CCCeEEEeCCCccceecC--CCCcc---cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 356677777 778888887 44332211 11222 1222334588999999999999985 456788899
Q ss_pred cchhc-cCChHHHHHHHHcCcccccC
Q 011590 458 GDSGF-GFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 458 GDGsf-~~~~~eL~T~~r~~l~i~~~ 482 (482)
|||++ .-..+.|.-++..++||+.|
T Consensus 100 GDG~~~~~g~~~l~~A~~~~~~v~~v 125 (300)
T PRK11864 100 GDGGTADIGFQALSGAAERNHDILYI 125 (300)
T ss_pred ccCccccccHHHHHHHHHhCcCEEEE
Confidence 99997 66678899999999999764
No 135
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=96.40 E-value=0.0062 Score=59.26 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=64.8
Q ss_pred CcccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhh----CCCCcEE
Q 011590 380 NFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA----CPERLVV 454 (482)
Q Consensus 380 ~~~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala----~p~~~vi 454 (482)
...-+++.|.+.+ .++.|++.+ |..+.+.+ .++.+ |.. .+...+.||-+.+.|.|.+.| .++++||
T Consensus 25 g~~~~~~~l~~a~----g~~~vi~~~iGC~s~~~~--~~p~~-~~~--~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv 95 (299)
T PRK11865 25 GAAIAMRLALKAL----GKNTVIVVATGCLEVITT--PYPET-AWN--VPWIHVAFENAAAVASGIERAVKALGKKVNVV 95 (299)
T ss_pred CcHHHHHHHHHHc----CCCEEEEeCCCcccccCc--cCcCC-ccc--cccchhhhcchHHHHHHHHHHHHHhcCCCeEE
Confidence 3444577777777 778888887 54444321 12322 222 133457788899999888777 4567999
Q ss_pred EEEcchhc-cCChHHHHHHHHcCcccccC
Q 011590 455 AVEGDSGF-GFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 455 ~~~GDGsf-~~~~~eL~T~~r~~l~i~~~ 482 (482)
++.|||++ --..+.|.-+++.+.+|+.|
T Consensus 96 ~~~GDG~~~dIG~~~L~~a~~r~~ni~~i 124 (299)
T PRK11865 96 AIGGDGGTADIGFQSLSGAMERGHNILYL 124 (299)
T ss_pred EEeCCchHhhccHHHHHHHHHcCCCeEEE
Confidence 99999977 55578999999999888754
No 136
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=96.26 E-value=0.015 Score=53.43 Aligned_cols=109 Identities=7% Similarity=0.084 Sum_probs=75.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCCCCcCHh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQV 128 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~q~~d~~ 128 (482)
+.-+|.|.+.+. +|+.+|++--| |+.-.+..|.+|...++|+++|.-+-.... .+. ..+...|..
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~GDG-~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIAGDG-AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 444677777654 57788777665 355557899999999999999994432210 010 022346777
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.+.-...++++++++.+.+++|+..+.. .||+.|++..|-
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~--~~p~liev~v~~ 180 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAE--GKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCC--CCeEEEEEEeCc
Confidence 78888877888999988888888877754323 489999998864
No 137
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=96.14 E-value=0.074 Score=47.47 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=75.8
Q ss_pred EE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCC-CcEEEEeCCCCcccCCCC-CCCCcCHhhh
Q 011590 54 FI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINT-WPIVMISGSCDQKDFGRG-DFQELDQVEA 130 (482)
Q Consensus 54 ~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~-~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~ 130 (482)
++ ....|++.+.+|.|++....+|-+. +..+-+..+...+..+-..+ +|+++....... .-+.+ .||..++..+
T Consensus 51 ~~~~gIaE~~~vg~a~GlA~~G~~pi~~--~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~-~g~~G~tH~~~~~~~~ 127 (168)
T smart00861 51 VIDTGIAEQAMVGFAAGLALAGLRPVVA--IFFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGG-VGEDGPTHHSQEDEAL 127 (168)
T ss_pred EEEcCcCHHHHHHHHHHHHHcCCCcEEE--eeHHHHHHHHHHHHHhCcccCCCEEEEecCccc-cCCCCccccchhHHHH
Confidence 65 3578999999999999986654443 44555556666776655554 777666532111 11224 3888999999
Q ss_pred hcccccee-eecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 131 VKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 131 ~~~~~k~~-~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
++.+.+.. ..+.+++++..+++.+++ ...+|+||.++.
T Consensus 128 ~~~iP~~~v~~P~~~~e~~~~l~~a~~----~~~~p~~i~~~~ 166 (168)
T smart00861 128 LRAIPGLKVVAPSDPAEAKGLLRAAIR----RDDGPPVIRLER 166 (168)
T ss_pred HhcCCCcEEEecCCHHHHHHHHHHHHh----CCCCCEEEEecC
Confidence 99987654 456677888888877772 234899999874
No 138
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=96.06 E-value=0.011 Score=54.86 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=85.8
Q ss_pred HHHHhCCCC------EEEEcCCcccc-ccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEE
Q 011590 213 SLLKEAKKP------LIVFGKGAAYA-RAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALV 283 (482)
Q Consensus 213 ~~L~~a~rp------vil~G~g~~~~-~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (482)
+.|..++|| +++.|+...-+ +..+.|..||+++|+.|-.|..+ .|.+|++ +.+|.-+. +=-..|-|+
T Consensus 205 ~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpNd--lQiGQTGK--IVAPeLYiA 280 (336)
T KOG3954|consen 205 QELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPND--LQIGQTGK--IVAPELYIA 280 (336)
T ss_pred hhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCCc--cccccccc--eeccceEEE
Confidence 455566666 56777655444 67788999999999999887765 3555553 55564321 223578888
Q ss_pred ecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 284 VGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 284 iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
+|.+---+...| ......|+-|+-||+..-+...|..+++|+-.++.+|++.|.+
T Consensus 281 vGisGAIQHLAG----mKDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~k 335 (336)
T KOG3954|consen 281 VGISGAIQHLAG----MKDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLPK 335 (336)
T ss_pred EeccHHHHHhhc----CccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhccC
Confidence 987654333333 3444568889999987766677999999999999999998864
No 139
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=96.05 E-value=0.0053 Score=58.10 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=50.6
Q ss_pred CCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc-cCCceeEeccHHHHHHHH
Q 011590 259 LPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL-RKPHLGLVGDAKKVLEMI 336 (482)
Q Consensus 259 ~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~-~~~~~~i~~D~~~~l~~L 336 (482)
|.|.+|.-.-......+++||++|+||+++..+.....+.....++++|.||.++..... ...|+.+.+|+.++|++|
T Consensus 157 FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 157 FGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred CCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 444444322223345678899999999998754322211122356788889998865532 335899999999999875
No 140
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=95.88 E-value=0.084 Score=47.66 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=75.8
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHhC-CcEEEEEcCChhhH----hhHHHHH-HhhhCCCcEEEEeCCCCcccCCCCCCCC
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLTG-KPGILLTVSGPGCV----HGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQE 124 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~tg-k~~v~~~t~GpG~~----N~~~ai~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~ 124 (482)
-+++. .-.|++.+.+|.|++...+ ++.++... ++=+. =+...+. .....+.|+.+++...-.....-+.||.
T Consensus 48 ~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f-~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s 126 (178)
T PF02779_consen 48 GRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF-ADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHS 126 (178)
T ss_dssp TTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE-GGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSS
T ss_pred ceEEecCcchhhccceeeeeeecccccceeEeec-cccccccchhhhhhhhhhhhcccceecceeecCcccccccccccc
Confidence 36664 4789999999999998864 66666544 33222 1334555 4666777877444433222333356788
Q ss_pred cCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 125 LDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 125 ~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
.+...+++.+-++.... .++.++..+++.|++. ..++|+||..|....
T Consensus 127 ~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~---~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 127 IEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR---ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS---SSSSEEEEEEESSEE
T ss_pred cccccccccccccccccCCCHHHHHHHHHHHHHh---CCCCeEEEEeeHHhC
Confidence 89999999998876654 4556665555555532 234999999998754
No 141
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=95.74 E-value=0.042 Score=49.48 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=69.0
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C---C----C----CC---CCcCH
Q 011590 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G---R----G----DF---QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~---~----~----~~---q~~d~ 127 (482)
+--+|.|.+.+..|+.++++--| ++.-.+..|.+|...++|++++.-+-..... . . . .+ ...|.
T Consensus 56 ~l~~aiGa~la~~~~Vv~i~GDG-sf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (175)
T cd02009 56 TLSTALGIALATDKPTVLLTGDL-SFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDF 134 (175)
T ss_pred HHHHHHHHHhcCCCCEEEEEehH-HHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCH
Confidence 44567777776678888776544 3444478999999999999998876542110 0 0 0 01 13466
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..+.+.+--...++++++++.+.+++|+ .. .+|+.|++..|
T Consensus 135 ~~lA~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lIev~v~ 175 (175)
T cd02009 135 EHLAKAYGLEYRRVSSLDELEQALESAL----AQ-DGPHVIEVKTD 175 (175)
T ss_pred HHHHHHcCCCeeeCCCHHHHHHHHHHHH----hC-CCCEEEEEeCC
Confidence 6677776656678888777766666665 33 48999998764
No 142
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=95.73 E-value=0.036 Score=52.40 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=54.2
Q ss_pred CCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcCCC-----C-------------eeecCCCCCcccchHHH
Q 011590 379 FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEP-----R-------------CRLDAGTWGTMGVGLGY 440 (482)
Q Consensus 379 ~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~-----~-------------~~~~~~~~g~mG~~l~~ 440 (482)
+....+.-.|+.+++. |.|.|+.+.| +..++-. +|..+.. | +-+...+.|--|.++++
T Consensus 44 LGvVELTiALH~vFd~--p~DkivwDvG-HQ~Y~HK-iLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSa 119 (270)
T PF13292_consen 44 LGVVELTIALHYVFDS--PKDKIVWDVG-HQAYVHK-ILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISA 119 (270)
T ss_dssp HCCHHHHHHHHHHS-T--TTSEEEESSS-TT-HHHH-HCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHH
T ss_pred ccHHHHHHHHHHHhCC--CCCeEEEecc-cccchhh-hccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHH
Confidence 3444555567777743 6666666554 4444322 2222110 0 11112234667889999
Q ss_pred HHHHhhhC----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590 441 CIAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 441 AiGaala~----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~ 482 (482)
|+|.+.|+ +++.||+++|||++- |..-.|-.+...+-++++|
T Consensus 120 a~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVI 167 (270)
T PF13292_consen 120 ALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVI 167 (270)
T ss_dssp HHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEE
Confidence 99988885 578999999999985 3444566666677666654
No 143
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=95.73 E-value=0.01 Score=55.26 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.7
Q ss_pred CCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf 462 (482)
..|++|++++.|+|+++.+++..|++++|||.+
T Consensus 60 ~~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~ 92 (227)
T cd02011 60 EGGELGYSLSHAYGAVFDNPDLIVACVVGDGEA 92 (227)
T ss_pred cccchhhHHHHHHHhhhcCCCcEEEEEECcCHH
Confidence 359999999999999999999999999999994
No 144
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=95.72 E-value=0.044 Score=48.08 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCC-----C---CCCC
Q 011590 62 SAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGR-----G---DFQE 124 (482)
Q Consensus 62 ~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~-----~---~~q~ 124 (482)
.+.-+|.|.+.+. +|+.++++--| ++...+..|.+|...++|+++|.-+-.... .+. . .+..
T Consensus 32 ~~~~~aiGa~~a~p~~~vv~i~GDG-~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (153)
T PF02775_consen 32 YALPAAIGAALARPDRPVVAITGDG-SFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPN 110 (153)
T ss_dssp THHHHHHHHHHHSTTSEEEEEEEHH-HHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTT
T ss_pred CHHHhhhHHHhhcCcceeEEecCCc-ceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcCccccccccccccc
Confidence 4556678888874 67888777655 455558999999999999999998664321 111 0 1455
Q ss_pred cCHhhhhccccceeeecCCc--CcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 125 LDQVEAVKPFSKFAVKAKDI--TEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 125 ~d~~~~~~~~~k~~~~~~~~--~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
.|...+.+.+--...+++++ +++.+.+++|+ . ..||+.|+|
T Consensus 111 ~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~-~~gp~vIeV 153 (153)
T PF02775_consen 111 PDFAALAEAFGIKGARVTTPDPEELEEALREAL----E-SGGPAVIEV 153 (153)
T ss_dssp CGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----H-SSSEEEEEE
T ss_pred CCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----h-CCCcEEEEc
Confidence 68888888886667788777 66655555555 4 349999986
No 145
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=95.70 E-value=0.051 Score=48.72 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=66.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C--------CC-----CCCCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G--------RG-----DFQELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~--------~~-----~~q~~d~ 127 (482)
+.-+|.|.+.+. .|+.+|++--| ++.-....+..|...++|+++|.-+-..... . .. .+...|.
T Consensus 53 ~lp~AiGa~la~~~~~vv~i~GDG-~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 131 (172)
T cd02004 53 GLGYAIAAALARPDKRVVLVEGDG-AFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRY 131 (172)
T ss_pred hHHHHHHHHHhCCCCeEEEEEcch-hhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCH
Confidence 445667777765 46777776555 3444478899999999998888865432110 0 00 1233566
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..+++.+.-...++++++++ ++|++.+... +||+.|++..|
T Consensus 132 ~~la~a~G~~~~~v~~~~el----~~al~~a~~~-~~p~liev~i~ 172 (172)
T cd02004 132 DLVAEAFGGKGELVTTPEEL----KPALKRALAS-GKPALINVIID 172 (172)
T ss_pred HHHHHHCCCeEEEECCHHHH----HHHHHHHHHc-CCCEEEEEEcC
Confidence 67777776667788776665 4555555444 49999998754
No 146
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=95.66 E-value=0.11 Score=47.89 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC----CCC------
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDF------ 122 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~------ 122 (482)
+.-+|.|.+.+. +|+.+|++--| ++.=.+..|..|...++|+++|.-+-..... +. ..+
T Consensus 62 ~lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~ 140 (202)
T cd02006 62 TVPAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSS 140 (202)
T ss_pred hhHHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcccccccccccccc
Confidence 334566666654 46777777555 3444457899999999999999876542210 00 000
Q ss_pred ----CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 123 ----QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 123 ----q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+..|-..+.+.+.-...++++++++.+.+++|+..+... .+|+.|+|..|-
T Consensus 141 ~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~-~~p~liev~i~~ 195 (202)
T cd02006 141 ELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEH-RVPVVVEAILER 195 (202)
T ss_pred ccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccC-CCcEEEEEEecc
Confidence 135667777887777889999888888888777654332 489999998753
No 147
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.62 E-value=0.45 Score=41.96 Aligned_cols=136 Identities=11% Similarity=0.067 Sum_probs=76.7
Q ss_pred EEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhC-CCcEEEEe
Q 011590 31 HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMIN-TWPIVMIS 109 (482)
Q Consensus 31 ~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~-~~Pvl~i~ 109 (482)
.+++=.|.....++. ..+..-+++..-.=..+.-+|.|.+.+..|+.+|++--| ++.-.+..+..+... ++|+++|.
T Consensus 16 ~vv~d~G~~~~~~~~-~~~~~~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i~GDG-~f~m~~~el~t~~~~~~~~i~~vV 93 (157)
T cd02001 16 PIVSTTGYASRELYD-VQDRDGHFYMLGSMGLAGSIGLGLALGLSRKVIVVDGDG-SLLMNPGVLLTAGEFTPLNLILVV 93 (157)
T ss_pred EEEeCCCHhHHHHHH-hhcCCCCEEeecchhhHHHHHHHHHhcCCCcEEEEECch-HHHhcccHHHHHHHhcCCCEEEEE
Confidence 444445554444422 122333555321112233356777766667777776444 233344667777666 59999998
Q ss_pred CCCCccc-CC-CCCCC-CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 110 GSCDQKD-FG-RGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 110 g~~~~~~-~~-~~~~q-~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
-+-.... .+ ....+ ..|...+.+.+.-...++++++++.+.+++|+ . ..||+.|++..|
T Consensus 94 ~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~-~~gp~vi~v~i~ 155 (157)
T cd02001 94 LDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLL----A-TTGPTLLHAPIA 155 (157)
T ss_pred EeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHH----h-CCCCEEEEEEec
Confidence 5543221 11 11122 45777777877666778877777666665555 3 348999998764
No 148
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=95.55 E-value=0.66 Score=41.35 Aligned_cols=148 Identities=11% Similarity=-0.005 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcC----hHHHHHHHHhC--CCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIP----VTSLANRAVQL--GVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~----~~~l~~al~~~--~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
.++.|.+.+++. -+.++.-.+.. .....+.+.++ +.+++.+ -.|++.+.+|.|.++. |+..++..+..+=+
T Consensus 3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~-G~~pi~~~~~a~Fl 80 (167)
T cd07036 3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMN-GLRPIVEIMFADFA 80 (167)
T ss_pred HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHc-CCEEEEEeehHHHH
Confidence 345666555543 34443333211 12345556542 3478854 8999999999999997 55333333445544
Q ss_pred HhhHHHHHH--hhhC-------CCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHh
Q 011590 89 VHGLAGLSN--GMIN-------TWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERA 158 (482)
Q Consensus 89 ~N~~~ai~~--A~~~-------~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a 158 (482)
..++--|.+ |+.+ +.||+++..... ..+.+..|......+++.+-...... .+++++..+++.++
T Consensus 81 ~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg--~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~--- 155 (167)
T cd07036 81 LPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG--GIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAI--- 155 (167)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC--CCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH---
Confidence 455554432 4443 699999874433 22334445444478999987766654 45666666665555
Q ss_pred hcCCCceEEEEcCc
Q 011590 159 VSGRPGGCYLDLPT 172 (482)
Q Consensus 159 ~~~~~gPv~l~iP~ 172 (482)
.. +||+++.-|+
T Consensus 156 -~~-~~P~~~~e~k 167 (167)
T cd07036 156 -RD-DDPVIFLEHK 167 (167)
T ss_pred -hC-CCcEEEEecC
Confidence 33 3899987763
No 149
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=95.30 E-value=1.4 Score=43.91 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=86.5
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEecCCc-----ChHHHHHHHH-hC-CCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEE
Q 011590 13 QIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAV-QL-GVRFIA-FHNEQSAGYAASAYGYLTGKPGILLT 82 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv--~~vFgvpG~-----~~~~l~~al~-~~-~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~ 82 (482)
+++..+++.+.|.+..- +.++.+..+ ....+.+.+. +- .-+++. .-.|++++.+|.|.|....||-+++-
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 44555666666555532 234444332 1222234443 23 256664 47899999999999997666666643
Q ss_pred cCChhhHhhHHHHHH--hhh-------CCCcEEEEeCCCCcccCCCCCC-CCcCHhhhhccccceeeec-CCcCcHHHHH
Q 011590 83 VSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGDF-QELDQVEAVKPFSKFAVKA-KDITEVPKCV 151 (482)
Q Consensus 83 t~GpG~~N~~~ai~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~-q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l 151 (482)
. --=+..++--|.+ |+. -++||++....-.....| ..| |.++ ++++.+....... .++.++..++
T Consensus 83 ~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G-~tH~~~~e--a~~r~iP~l~V~~P~d~~e~~~~l 158 (327)
T PRK09212 83 T-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVA-AQHSQCYA--AWYSHIPGLKVVAPYFAADCKGLL 158 (327)
T ss_pred h-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCC-cccccCHH--HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 2 1112233222211 344 279999986653322221 224 4443 8999987766654 4666776666
Q ss_pred HHHHHHhhcCCCceEEEEcCcchh
Q 011590 152 AQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 152 ~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
+.|++ . ++|+||..|....
T Consensus 159 ~~a~~----~-~~Pv~i~~~~~~~ 177 (327)
T PRK09212 159 KTAIR----D-PNPVIFLENEILY 177 (327)
T ss_pred HHHHh----C-CCcEEEEEchhhc
Confidence 66553 3 4899997766544
No 150
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=95.30 E-value=0.12 Score=47.05 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=71.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-CC---C-CCCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-RG---D-FQELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~~---~-~q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| ++.-.+..|..|...++|++++.-+-.... .+ +. . ....|.
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~GDG-~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 133 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICIDGDG-SFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDF 133 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEEccc-HHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCH
Confidence 334566666654 46777776655 566667889999999999999887654321 00 00 0 123577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-...++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 134 ~~~a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~~ 175 (186)
T cd02015 134 VKLAEAYGIKGLRVEKPEELEAALKEAL----AS-DGPVLLDVLVDP 175 (186)
T ss_pred HHHHHHCCCceEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeCC
Confidence 7788888777888888777665555554 33 489999998874
No 151
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=95.21 E-value=2.7 Score=41.82 Aligned_cols=227 Identities=15% Similarity=0.032 Sum_probs=116.6
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEecCCc-----ChHHHHHHHHh-CCC-cEEec-CchHHHHHHHHHHHhHhCCcEEEEE
Q 011590 13 QIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAVQ-LGV-RFIAF-HNEQSAGYAASAYGYLTGKPGILLT 82 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv--~~vFgvpG~-----~~~~l~~al~~-~~i-~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~ 82 (482)
+++..+++.+.|.+..- +.++.+-.. .....++.+.+ -+- +++.+ -.|++++.+|.|.|+...||-+...
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~ 82 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGM 82 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEee
Confidence 35555666666655532 234443322 22344555654 233 78754 7899999999999998666665433
Q ss_pred cCChhhHhhHHHHHH--hhh-------CCCcEEEEeCCCCcccCCCCC-C-CCcCHhhhhccccceeee-cCCcCcHHHH
Q 011590 83 VSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGD-F-QELDQVEAVKPFSKFAVK-AKDITEVPKC 150 (482)
Q Consensus 83 t~GpG~~N~~~ai~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~-~-q~~d~~~~~~~~~k~~~~-~~~~~~~~~~ 150 (482)
.+- =+.-++--|.+ |+. -++||++..+.-.. .+.+. | |.+ ..+++.+-.+... +.++.++..+
T Consensus 83 ~~~-f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~--~~~G~tHs~~~--ea~~~~iPgl~V~~Psd~~d~~~~ 157 (327)
T CHL00144 83 NMG-FLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVG--RQLGAEHSQRL--ESYFQSVPGLQIVACSTPYNAKGL 157 (327)
T ss_pred hhh-HHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCC--CCCCccccccH--HHHHhcCCCCEEEEeCCHHHHHHH
Confidence 211 11233333322 444 38899988543212 12232 4 443 4899999888665 4567777666
Q ss_pred HHHHHHHhhcCCCceEEEEcCcchhcc--ccChhHHHHHHHhhhhhcc-----cccCCCCCHHHHHHHHHHHHhCCCCEE
Q 011590 151 VAQVLERAVSGRPGGCYLDLPTDVLHQ--TISVSEAEKLLKEAESAKE-----TVTQGGIVNSDIDKAVSLLKEAKKPLI 223 (482)
Q Consensus 151 l~~A~~~a~~~~~gPv~l~iP~dv~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~~a~rpvi 223 (482)
+..|++ . ++||||.-|..+... .++... ...+........ ..-....--....++++.|++..--+=
T Consensus 158 l~~a~~----~-~~Pv~ire~~~l~~~~~~v~~~~-~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~ 231 (327)
T CHL00144 158 LKSAIR----S-NNPVIFFEHVLLYNLKEEIPDNE-YLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPE 231 (327)
T ss_pred HHHHHh----C-CCcEEEEEcHHhcCCCCCCCCCC-ccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEE
Confidence 666553 3 499999733333221 122110 001100000000 000111112345566667755332233
Q ss_pred EEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 224 VFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 224 l~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
++.--....-..+.|.+.+++++.-|+
T Consensus 232 VId~~~ikPlD~~~i~~~~~~t~~vv~ 258 (327)
T CHL00144 232 IIDLISLKPLDLGTISKSVKKTHKVLI 258 (327)
T ss_pred EEecCcCCCCCHHHHHHHHHhhCcEEE
Confidence 333333334567788889988877544
No 152
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=95.21 E-value=0.022 Score=54.18 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCC--CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW--SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~--~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (482)
....+++||++|+||+++..+.. .....+ ..+.+++.||.++..... ..++.+.+|+.++|++|.+.+
T Consensus 172 ~~~~~~~aDl~lviGTSl~V~pa-~~l~~~~~~~g~~~i~iN~~~t~~d~-~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 172 AIRLSSKASLMIVMGSSLVVYPA-AELPLITVRSGGKLVIVNLGETPLDD-IATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHhcCCEEEEeCcCCeeecH-hHHHHHHHHcCCeEEEEcCCCCCCCc-ceeEEEeCCHHHHHHHHHHHh
Confidence 33567899999999999875432 221111 356889999998766542 247899999999999998864
No 153
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=95.13 E-value=0.15 Score=46.02 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=67.3
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CCC---CCCCcCHhhhhc
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GRG---DFQELDQVEAVK 132 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~~---~~q~~d~~~~~~ 132 (482)
+|.|.+.++ +++.++++--|. +.-....|..|...++|+++|.-.-.... . ++. .++..|...+.+
T Consensus 56 ~aiGa~la~~~~~vv~i~GDG~-f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 134 (177)
T cd02010 56 GAIGAKLVYPDRKVVAVSGDGG-FMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAE 134 (177)
T ss_pred HHHHHHHhCCCCcEEEEEcchH-HHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHH
Confidence 456666554 467787776553 33334678889999999999975443211 0 011 122346667777
Q ss_pred cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.-...++.+++++.+.+++|+ . .+||+.|+++.|-
T Consensus 135 a~G~~~~~v~~~~el~~al~~a~----~-~~~p~liev~~~~ 171 (177)
T cd02010 135 SFGAKGYRIESADDLLPVLERAL----A-ADGVHVIDCPVDY 171 (177)
T ss_pred HCCCEEEEECCHHHHHHHHHHHH----h-CCCCEEEEEEecc
Confidence 77667788888888766666665 3 3599999998763
No 154
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=95.13 E-value=0.15 Score=55.63 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=80.0
Q ss_pred cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhh
Q 011590 53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEA 130 (482)
Q Consensus 53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~ 130 (482)
+++. ---|++++.+|.|.++..|+..++ .|..+=+.-+...|..+-..+.||+++........ ..-..||.+.++.+
T Consensus 397 rfi~~GIaEq~mv~~AaGlA~~gG~~p~~-~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~ 475 (653)
T TIGR00232 397 NYIHYGVREFAMGAIMNGIALHGGFKPYG-GTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS 475 (653)
T ss_pred CeEeecccHHHHHHHHHHHHHcCCCeEEE-EEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH
Confidence 6664 577999999999999977765554 45455444556788888889999999984332221 11235899999999
Q ss_pred hccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
++.+-.... ++.++.++..+ ++.|.....||+||.+|..-
T Consensus 476 lr~iPn~~v~~PaD~~E~~~~----~~~a~~~~~gP~~irl~r~~ 516 (653)
T TIGR00232 476 LRAIPNLSVWRPCDGNETAAA----WKYALESQDGPTALILSRQN 516 (653)
T ss_pred HhcCCCCEEEeeCCHHHHHHH----HHHHHhcCCCcEEEEEcCCc
Confidence 998765443 44455555444 44444334599999999764
No 155
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=95.03 E-value=0.14 Score=47.46 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=82.5
Q ss_pred EEEecCCcChHHHHHHHH-hCCCcEEecCch---HHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcE
Q 011590 31 HMFGVVGIPVTSLANRAV-QLGVRFIAFHNE---QSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPI 105 (482)
Q Consensus 31 ~vFgvpG~~~~~l~~al~-~~~i~~v~~~~E---~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pv 105 (482)
.++.=.|.+...+...+. +..-+++....= .-+.-+|.|.+.+. +++.++++--| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 344444555444444443 233455543211 12333566666554 56777776555 4444567888899999999
Q ss_pred EEEeCCCCccc--------CCCC------------------CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590 106 VMISGSCDQKD--------FGRG------------------DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV 159 (482)
Q Consensus 106 l~i~g~~~~~~--------~~~~------------------~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~ 159 (482)
++|.-+-.... .+.. ..+..|...+.+.+.-...++++++++.+.+++|+
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~---- 171 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK---- 171 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence 98887554221 0000 01245777788887666778888888776666665
Q ss_pred cCCCceEEEEcCcch
Q 011590 160 SGRPGGCYLDLPTDV 174 (482)
Q Consensus 160 ~~~~gPv~l~iP~dv 174 (482)
. .+||+.|++..|-
T Consensus 172 ~-~~gp~lIeV~v~~ 185 (205)
T cd02003 172 A-SDRTTVIVIKTDP 185 (205)
T ss_pred h-CCCCEEEEEEeec
Confidence 3 3489999998764
No 156
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=94.99 E-value=0.9 Score=40.89 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=68.4
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CCC----CCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GRG----DFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~~----~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +|+.++++.-|.-..+ +..|.+|...++|+++|.-+-..... +.. .++..|...
T Consensus 56 ~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (178)
T cd02014 56 GLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAK 134 (178)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHH
Confidence 334566666654 5788888776654444 67888899999999999876642210 110 123457777
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.+.+--...++++++++.+.+++ +... .+|+.|++..|
T Consensus 135 la~a~G~~~~~v~~~~el~~~l~~----a~~~-~~p~liev~~~ 173 (178)
T cd02014 135 IAEAMGIKGIRVEDPDELEAALDE----ALAA-DGPVVIDVVTD 173 (178)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHH----HHhC-CCCEEEEEEeC
Confidence 888776566788877766555544 4443 48999998765
No 157
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=94.96 E-value=0.89 Score=49.41 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=91.6
Q ss_pred CcHHHHHHHHHHhcCC--CEEEec----CCc-ChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 14 IDGNTLAAKSLSLFGA--THMFGV----VGI-PVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv--~~vFgv----pG~-~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.+..+++.+.|.+..- +.++.+ +++ ....|.+.+ .-+++ ..--|++++.+|.|.|.. |+..+|.+ ..
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~f---P~R~~d~GIaEq~~vg~AaGlA~~-G~~Pvv~~-~a 384 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKF---PDRYFDVAIAEQHAVTFAAGMAIE-GYKPFVAI-YS 384 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHC---ccccccCCccHHHHHHHHHHHHHC-CCEEEEEe-cH
Confidence 4566777777766542 234442 222 222333332 23444 346799999999999985 54334333 44
Q ss_pred hhhHhhHHHHH-HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCC
Q 011590 86 PGCVHGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 86 pG~~N~~~ai~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+=+.-++--|. .+-..+.||+++..........-..||......+++.+...... +.++.++..+++.|+ ...+
T Consensus 385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~----~~~~ 460 (617)
T TIGR00204 385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGY----HYDD 460 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH----hCCC
Confidence 43444554553 35567899999865443321112357777778999998877544 456667666665555 3345
Q ss_pred ceEEEEcCcch
Q 011590 164 GGCYLDLPTDV 174 (482)
Q Consensus 164 gPv~l~iP~dv 174 (482)
+|+|+.+|...
T Consensus 461 ~Pv~ir~~r~~ 471 (617)
T TIGR00204 461 GPIAVRYPRGN 471 (617)
T ss_pred CCEEEEEccCC
Confidence 99999999764
No 158
>PLN02790 transketolase
Probab=94.77 E-value=0.23 Score=54.35 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=79.9
Q ss_pred cEEe-cCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhh
Q 011590 53 RFIA-FHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVE 129 (482)
Q Consensus 53 ~~v~-~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~ 129 (482)
+++. ---|++++.+|.|.++-. |...++ .|..+=++-+..++..+...+.||+++........ ..-..||.+.++.
T Consensus 393 Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~iedla 471 (654)
T PLN02790 393 RNVRFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLA 471 (654)
T ss_pred CeEEeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHHHH
Confidence 5553 356999999999999974 554443 35555445567788889999999999873322222 1124689999999
Q ss_pred hhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+++.+...... +.+..++ ..+++.|.....||+||.+|..-
T Consensus 472 ~lR~iPnl~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 472 SLRAMPNILMLRPADGNET----AGAYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred HhcCCCCcEEEeCCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence 99998775543 3444444 44555555434599999999864
No 159
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=94.76 E-value=0.088 Score=54.28 Aligned_cols=111 Identities=23% Similarity=0.233 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcc-cch---HHHHhhhcCC
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-ATA---ARSLAIGQCD 279 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~-~G~---~~~~~l~~aD 279 (482)
=+++++.+++.|+++++|+++ |++.........+.+|++.+|..+- +....+..+..+.+. .|. ...+..+++|
T Consensus 56 WdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad 133 (415)
T cd02761 56 LEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQDSGWPTTTLGEVKNRAD 133 (415)
T ss_pred cHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHhCCCccccHHHHHhcCC
Confidence 357899999999999999887 4444333445678899999997432 221212222222111 111 1123335799
Q ss_pred EEEEecCccCcccccCC------CCC-----CCCCCcEEEEeCCchhh
Q 011590 280 VALVVGARLNWLLHFGE------PPK-----WSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 280 lvl~iG~~~~~~~~~g~------~~~-----~~~~~~ii~id~d~~~~ 316 (482)
+||++|+++........ ... ...+.|+|.||+.....
T Consensus 134 ~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 134 VIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred EEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 99999998764321100 000 13567999999866554
No 160
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=94.72 E-value=0.12 Score=52.51 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g 246 (482)
...++++++|..|+|.+|+-|+|..-+.+...+++|+|.|.
T Consensus 294 ~~~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~ 334 (462)
T PRK09444 294 TTAEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR 334 (462)
T ss_pred cCHHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999988888888888888765
No 161
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=94.64 E-value=0.021 Score=56.78 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=36.9
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~ 478 (482)
..|++|.|++.|+|.|+|.. +.+|++|+|||.++=... .+..+.+++|.
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~ 173 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLD 173 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-T
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCC
Confidence 36999999999999999852 457999999999986544 57777788886
No 162
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=94.56 E-value=0.44 Score=42.94 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=64.9
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCC-----------CCCCCcCHhhhh
Q 011590 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGR-----------GDFQELDQVEAV 131 (482)
Q Consensus 65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~-----------~~~q~~d~~~~~ 131 (482)
-+|.|.+.+. .|+.++++--|-=..+.+..|..|...++|+++|.-+-.... .+. ......|...++
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a 137 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALV 137 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHH
Confidence 3456666654 456666654442222336889999999999999987654321 110 001235777778
Q ss_pred ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+.+.-...++.+++++.++ .+|++.|... +||..|++
T Consensus 138 ~a~G~~~~~v~~~~~l~~~-~~al~~a~~~-~gp~lI~v 174 (178)
T cd02008 138 RAIGVKRVVVVDPYDLKAI-REELKEALAV-PGVSVIIA 174 (178)
T ss_pred HHCCCCEEEecCccCHHHH-HHHHHHHHhC-CCCEEEEE
Confidence 8776667788888888743 3555555543 48888875
No 163
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=94.42 E-value=0.057 Score=51.36 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=48.5
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCC--CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPK--WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~--~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (482)
...++++|++|+||+++.... ...... ..+++++|.||.++..... ..++.+.+|+.++|++|.+.+
T Consensus 172 ~~~~~~~dl~lviGTsl~V~p-~~~l~~~~~~~~~~~i~iN~~~~~~~~-~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 172 YEALEEADLFIVIGTSLVVYP-AAGLPYEAREHGAKTVEINLEPTPLDS-LFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHhcCCEEEEECCCceEcC-HhHHHHHHHHCCCeEEEECCCCCCCCC-ccCEEEECCHHHHHHHHHHHh
Confidence 356789999999999986422 222111 1367889999999865532 247899999999999998765
No 164
>PRK12753 transketolase; Reviewed
Probab=94.34 E-value=0.36 Score=52.80 Aligned_cols=117 Identities=13% Similarity=-0.033 Sum_probs=81.0
Q ss_pred cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhh
Q 011590 53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEA 130 (482)
Q Consensus 53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~ 130 (482)
+++. ---|++++.+|.|.++-.|...+ +.|..+=+.=+...|..+-..+.||+++..-..... ..-..||.+.++.+
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~-~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~ 481 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPY-TATFLMFVEYARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS 481 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEE-EEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH
Confidence 5553 36799999999999996664333 445556556777888888899999999854433333 22246899999999
Q ss_pred hccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+|.+-..... +.+..++ ..+++.|.....||+||.++..-
T Consensus 482 lR~iPn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~~ 522 (663)
T PRK12753 482 LRLTPNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQN 522 (663)
T ss_pred HhcCCCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCCC
Confidence 9998765543 3344444 45556665544599999999753
No 165
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=94.33 E-value=0.05 Score=53.12 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
....++++|++|+||+++........+... ..+.++|.||.++...... .++.+.+|+.++|++|.+.|.
T Consensus 208 a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~-~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 208 ARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPL-LTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcc-eeEEEeCCHHHHHHHHHHHhC
Confidence 345678999999999999764332211111 2456899999987655322 278999999999999988875
No 166
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=94.31 E-value=0.032 Score=55.96 Aligned_cols=47 Identities=19% Similarity=0.074 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCc
Q 011590 431 WGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCII 477 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l 477 (482)
.|++|.|++.|+|.|+|.+ +.+|++|+|||.++=... .+..+.+++|
T Consensus 117 TGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL 176 (386)
T cd02017 117 TVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKL 176 (386)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCC
Confidence 5999999999999888742 578999999999886544 4666677787
No 167
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=94.26 E-value=1.3 Score=39.64 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=68.9
Q ss_pred CCcEEecCchHHHH---HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------
Q 011590 51 GVRFIAFHNEQSAG---YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------- 117 (482)
Q Consensus 51 ~i~~v~~~~E~~A~---~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------- 117 (482)
.-+++.... ..-+ -+|.|.+.+. .++.++++--| ++.-.+..|..|...+.|+++|.-+-.....
T Consensus 40 ~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~ 117 (178)
T cd02002 40 PGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDG-SFMYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVG 117 (178)
T ss_pred CCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHc
Confidence 346665544 3322 3677777765 56666666544 3344457888898999999999876542110
Q ss_pred C----------CC-CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 118 G----------RG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 118 ~----------~~-~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
+ .. .....|...+++.+.-...++++++++.+.+++ +... .+|+.|++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~----a~~~-~~p~vi~v~ 177 (178)
T cd02002 118 PEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVETPEELDEALRE----ALAE-GGPALIEVV 177 (178)
T ss_pred CCCcccccccccccCCCCCCHHHHHHHcCCceEEeCCHHHHHHHHHH----HHhC-CCCEEEEEE
Confidence 0 00 012356677777776566778776665544444 4443 489998874
No 168
>PTZ00089 transketolase; Provisional
Probab=94.24 E-value=0.36 Score=52.85 Aligned_cols=117 Identities=12% Similarity=0.037 Sum_probs=79.2
Q ss_pred cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CCCCCCCCcCHhhh
Q 011590 53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FGRGDFQELDQVEA 130 (482)
Q Consensus 53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~~~~q~~d~~~~ 130 (482)
+++. ---|++++.+|.|.++-.|...+ +.|..+=+.=+...|..+-..+.||+++..-..... ..-..||.+.++.+
T Consensus 404 rfi~~GIaEq~mv~~AaGlA~~~G~~P~-~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~ 482 (661)
T PTZ00089 404 RYIRFGVREHAMCAIMNGIAAHGGFIPF-GATFLNFYGYALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLAL 482 (661)
T ss_pred CeeeeeecHHHHHHHHHHHHHcCCCeEE-EEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHH
Confidence 5553 35699999999999996563333 334455455777889999999999999963222222 12245899999999
Q ss_pred hccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
++.+-.-.. ++.+..++ ..+++.|.....||+||.+|..-
T Consensus 483 lR~iPn~~V~~PaD~~E~----~~~l~~al~~~~gP~~irl~R~~ 523 (661)
T PTZ00089 483 LRATPNLLVIRPADGTET----SGAYALALANAKTPTILCLSRQN 523 (661)
T ss_pred HhcCCCcEEEecCCHHHH----HHHHHHHHHcCCCCEEEEecCCC
Confidence 999866443 33444444 45555555334599999999863
No 169
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=94.20 E-value=0.12 Score=53.02 Aligned_cols=129 Identities=26% Similarity=0.324 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC---CcEee-CCCCCCCCCCCCCcccch-------------
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG---IPFLP-TPMGKGLLPDTHPLAATA------------- 269 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g---~pv~~-t~~~~g~~~~~hp~~~G~------------- 269 (482)
..++++++|..|+|.+|+-|+|..-+.+...+++|+|.|. +-|-- =..-.|-.|- ++..
T Consensus 296 ~~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----HMNVLLAEa~VpYd~~~ 371 (463)
T PF02233_consen 296 SAEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPG----HMNVLLAEANVPYDIVK 371 (463)
T ss_dssp SHHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTT----HHHHHHHHCT--GGGEE
T ss_pred CHHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC----cceEEEEecCCCHHHHh
Confidence 4678999999999999999999988888888888777654 33210 0001111111 1111
Q ss_pred ---HHHHhhhcCCEEEEecCccCc----c-----cccCCC--CCCCCCCcEEEEeCCch--hhc-----ccCC-ceeEec
Q 011590 270 ---ARSLAIGQCDVALVVGARLNW----L-----LHFGEP--PKWSKDVKFVLVDVCKE--EIE-----LRKP-HLGLVG 327 (482)
Q Consensus 270 ---~~~~~l~~aDlvl~iG~~~~~----~-----~~~g~~--~~~~~~~~ii~id~d~~--~~~-----~~~~-~~~i~~ 327 (482)
..|.-+.+.|++|+||++-.- . ..+|-| .-| +-+++|.+..+-. ..+ ++++ +.=+.|
T Consensus 372 emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfG 450 (463)
T PF02233_consen 372 EMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFG 450 (463)
T ss_dssp EHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES
T ss_pred hhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCCCCCcceecCCcEEEec
Confidence 134567899999999976421 1 112211 112 2234444443221 111 3344 556889
Q ss_pred cHHHHHHHHHHhh
Q 011590 328 DAKKVLEMINKEI 340 (482)
Q Consensus 328 D~~~~l~~L~~~l 340 (482)
|++..++++..++
T Consensus 451 DAk~~~~~l~~~~ 463 (463)
T PF02233_consen 451 DAKKTLEELVAEL 463 (463)
T ss_dssp -HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC
Confidence 9999999987653
No 170
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=94.12 E-value=8 Score=42.35 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=89.9
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEec-CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 13 QIDGNTLAAKSLSLFGA--THMFGV-VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv--~~vFgv-pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
.++..+++.+.|.+..= +.|+++ ++.....-++.+.+ -.-+++. .--|++++.+|.|.|...-||.+++- .+=
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy--stF 457 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP--SAF 457 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEee--hhH
Confidence 45777777777766642 344444 22111111233332 2334443 35799999999999987666665533 222
Q ss_pred hHhhHHHHHH-hhhCCCcEEEEeCCCCcccCC-CC-CCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCC
Q 011590 88 CVHGLAGLSN-GMINTWPIVMISGSCDQKDFG-RG-DFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 88 ~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~-~~-~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+.-++--|.. +-..+.||.++..... ..+ .| .||.+..+++++.+....... .++.++..++..|+ ...+
T Consensus 458 lqRAyDQI~~Dval~~lpV~~vid~aG--lvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~----~~~~ 531 (701)
T PLN02225 458 LQRAYDQVVHDVDRQRKAVRFVITSAG--LVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAA----YVTD 531 (701)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEECCc--cCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hcCC
Confidence 3333333333 4556778877754332 223 23 467666679999998877765 45556655554444 3345
Q ss_pred ceEEEEcCcch
Q 011590 164 GGCYLDLPTDV 174 (482)
Q Consensus 164 gPv~l~iP~dv 174 (482)
+|+||.+|...
T Consensus 532 gPv~IR~pRg~ 542 (701)
T PLN02225 532 RPVCFRFPRGS 542 (701)
T ss_pred CCEEEEecccc
Confidence 99999999874
No 171
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=94.12 E-value=2 Score=43.23 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=89.6
Q ss_pred ccCCcHHHHHHHHHHhcCC--CEEEecCCc-C----hHHHHHHHHh-CC-CcEEe-cCchHHHHHHHHHHHhHhCCcEEE
Q 011590 11 NAQIDGNTLAAKSLSLFGA--THMFGVVGI-P----VTSLANRAVQ-LG-VRFIA-FHNEQSAGYAASAYGYLTGKPGIL 80 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv--~~vFgvpG~-~----~~~l~~al~~-~~-i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~ 80 (482)
+.+++..+++.+.|.+..- +.++.+.++ . ....++.+.+ -+ -+++. .-.|++++.+|.|.|....||-+.
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 3456677777777776643 234444333 2 1333444543 32 45664 478999999999999975555554
Q ss_pred EEcCChhhHhhHHHHHH--hhh-------CCCcEEEEeCCCCcccCCCCCC-CCcCHhhhhccccceeeec-CCcCcHHH
Q 011590 81 LTVSGPGCVHGLAGLSN--GMI-------NTWPIVMISGSCDQKDFGRGDF-QELDQVEAVKPFSKFAVKA-KDITEVPK 149 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~--A~~-------~~~Pvl~i~g~~~~~~~~~~~~-q~~d~~~~~~~~~k~~~~~-~~~~~~~~ 149 (482)
+ ....=+..++--|.+ |+. -++||++....-.... .-..| |.++ .+++.+-...... .++.++..
T Consensus 112 ~-~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~-~G~tHs~~~e--a~lr~iPn~~V~~Psd~~e~~~ 187 (355)
T PTZ00182 112 F-MFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGH-GGAYHSQSFE--AYFAHVPGLKVVAPSDPEDAKG 187 (355)
T ss_pred e-chhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCC-CCCcccchHH--HHHhcCCCCEEEeeCCHHHHHH
Confidence 3 222222333333322 333 3789987743222211 12234 4443 8899987766654 45666666
Q ss_pred HHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 150 CVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 150 ~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
+++.|+ .. ++|+||..|..+..
T Consensus 188 ~l~~a~----~~-~~P~~i~~p~~l~r 209 (355)
T PTZ00182 188 LLKAAI----RD-PNPVVFFEPKLLYR 209 (355)
T ss_pred HHHHHH----hC-CCcEEEEeehHHhC
Confidence 665555 33 49999998876654
No 172
>PLN02790 transketolase
Probab=94.09 E-value=0.046 Score=59.63 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=39.9
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~ 478 (482)
..|.+|.+++.|+|.|+|.. +..|++++|||+++=... .+..+..++||
T Consensus 103 ~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~ 167 (654)
T PLN02790 103 TTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLG 167 (654)
T ss_pred cCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCC
Confidence 46999999999999988854 467999999999875433 57777789997
No 173
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=94.05 E-value=0.44 Score=51.50 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=91.4
Q ss_pred CcHHHHHHHHHHhcCC--CEEEec-CC---c-ChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 14 IDGNTLAAKSLSLFGA--THMFGV-VG---I-PVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv--~~vFgv-pG---~-~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.+..+++.+.|.+..= ..++++ .+ + ....|.+.+ .-+++ ..--|++++.+|.|.+.. |...++.+ ..
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~---p~R~i~~GIaE~~mvg~A~GlA~~-G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRF---PDRYFDVGIAEQHAVTFAAGLATE-GLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHh---hhhccCCChHHHHHHHHHHHHHHC-CCeeEEEe-eH
Confidence 4566777777666532 234432 22 2 222333322 12444 235799999999999995 44333332 34
Q ss_pred hhhHhhHHHHHH-hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 86 PGCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 86 pG~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+=+.-+..-|.+ +-..+.||+++..........-..||.+.+..+++.+-.+.. .+.++.++..+++.|+ ...+
T Consensus 354 ~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~----~~~~ 429 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL----AYDD 429 (580)
T ss_pred HHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hCCC
Confidence 433445554544 566899999997533332211235788888999999988754 4455666655555444 4335
Q ss_pred ceEEEEcCcchh
Q 011590 164 GGCYLDLPTDVL 175 (482)
Q Consensus 164 gPv~l~iP~dv~ 175 (482)
+|+||.+|....
T Consensus 430 ~P~~ir~~r~~~ 441 (580)
T PRK05444 430 GPIAIRYPRGNG 441 (580)
T ss_pred CcEEEEecCCCC
Confidence 999999998653
No 174
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=94.03 E-value=0.44 Score=43.58 Aligned_cols=149 Identities=11% Similarity=0.043 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHhcCC---CE-EEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhH
Q 011590 15 DGNTLAAKSLSLFGA---TH-MFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCV 89 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv---~~-vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~ 89 (482)
..-+++.+.+.+.|+ +. ++.=-|.. . +.... -.+......- ..+.-+|.|.+.+. +|+.++++--|--..
T Consensus 9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~~-~-~~~~~--~~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~GDGs~f~ 83 (193)
T cd03375 9 SILKALAKALAELGIDPEKVVVVSGIGCS-S-RLPYY--FNTYGFHTLH-GRALAVATGVKLANPDLTVIVVSGDGDLAA 83 (193)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCChh-c-eehhh--ccccchhhhh-ccHHHHHHHHHHhCCCCeEEEEeccchHhh
Confidence 355778888888776 33 33333332 2 11111 1111111000 11334677777764 567777765553233
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCccc-CC----------CC---CC-----CCcCHhhhhccc-ccee--eecCCcCcH
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKD-FG----------RG---DF-----QELDQVEAVKPF-SKFA--VKAKDITEV 147 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~----------~~---~~-----q~~d~~~~~~~~-~k~~--~~~~~~~~~ 147 (482)
-.+..|..|...++|+++|.-+-.... .+ .. .. ...|...+.+.+ .++. .++.+++++
T Consensus 84 m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el 163 (193)
T cd03375 84 IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL 163 (193)
T ss_pred ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH
Confidence 446889999999999999886543221 11 00 00 113555565554 2332 356676666
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 148 PKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 148 ~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.+++|+ .. +||+.|++..+
T Consensus 164 ~~al~~al----~~-~gp~vIev~~~ 184 (193)
T cd03375 164 KEIIKKAI----QH-KGFSFVEVLSP 184 (193)
T ss_pred HHHHHHHH----hc-CCCEEEEEECC
Confidence 55555555 33 48999988754
No 175
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=94.02 E-value=0.4 Score=42.43 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=64.5
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC----------C---CCCCCcCHhh
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG----------R---GDFQELDQVE 129 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~----------~---~~~q~~d~~~ 129 (482)
..+|.|.+.+. +++.++++--|. +...+.++..|...++|+++|.-+-...... . ...+..|...
T Consensus 52 ~~~a~Gaa~a~~~~~vv~~~GDG~-~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 130 (168)
T cd00568 52 LPAAIGAALAAPDRPVVCIAGDGG-FMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAA 130 (168)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCcH-HhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHH
Confidence 34566777666 466776665553 3346688999999999999998765432110 0 1123457777
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
+++.+.-...++.+++++ .+|++.+.+. .||+.|++.
T Consensus 131 ~a~~~G~~~~~v~~~~~l----~~a~~~a~~~-~~p~~i~v~ 167 (168)
T cd00568 131 LAEAYGAKGVRVEDPEDL----EAALAEALAA-GGPALIEVK 167 (168)
T ss_pred HHHHCCCeEEEECCHHHH----HHHHHHHHhC-CCCEEEEEE
Confidence 777765556677765555 4555555444 489998874
No 176
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=93.98 E-value=0.64 Score=48.49 Aligned_cols=150 Identities=9% Similarity=0.023 Sum_probs=91.8
Q ss_pred cCCcHHHHHHHHHHhcCC--CEEEecCC-----cChHHHHHHHH-hC-CCcEEe-cCchHHHHHHHHHHHhHhCCcEEEE
Q 011590 12 AQIDGNTLAAKSLSLFGA--THMFGVVG-----IPVTSLANRAV-QL-GVRFIA-FHNEQSAGYAASAYGYLTGKPGILL 81 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv--~~vFgvpG-----~~~~~l~~al~-~~-~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~ 81 (482)
.+++..+++.+.|.+..- +.+|.+-. ...+.+.+.|. +- .-+++. .-.|++++.+|.|.|....||-+.+
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 445666677666666542 23444432 12222222222 22 235664 3689999999999999866776654
Q ss_pred EcCChhhHhhHHHHHH-hh--------hCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHH
Q 011590 82 TVSGPGCVHGLAGLSN-GM--------INTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCV 151 (482)
Q Consensus 82 ~t~GpG~~N~~~ai~~-A~--------~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l 151 (482)
.++. =+..++--|.+ +- ..+.||++...+.+... .+.+|..+...+++.+-..... +.++.++..++
T Consensus 220 ~~~~-f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll 296 (464)
T PRK11892 220 MTFN-FAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLL 296 (464)
T ss_pred ehHH-HHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHH
Confidence 4321 12344444433 33 67899999976654443 4558888889999999776665 45667776666
Q ss_pred HHHHHHhhcCCCceEEEE
Q 011590 152 AQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 152 ~~A~~~a~~~~~gPv~l~ 169 (482)
+.|+ .. ++|||+.
T Consensus 297 ~~ai----~~-~~Pv~il 309 (464)
T PRK11892 297 KAAI----RD-PNPVIFL 309 (464)
T ss_pred HHHh----hC-CCcEEEE
Confidence 6665 33 4899984
No 177
>PRK12754 transketolase; Reviewed
Probab=93.93 E-value=0.45 Score=51.90 Aligned_cols=116 Identities=14% Similarity=-0.028 Sum_probs=80.9
Q ss_pred cEE-ecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-CCCCCCcCHhhh
Q 011590 53 RFI-AFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-RGDFQELDQVEA 130 (482)
Q Consensus 53 ~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~~~~q~~d~~~~ 130 (482)
++| .---|++++.+|.|.++-.|... +..|..+=+.-+...|..+-..+.||+++..-.....-. -..||.+.++.+
T Consensus 403 r~i~~GIaE~~Mv~iaaGlA~~~G~~P-f~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~ 481 (663)
T PRK12754 403 NYIHYGVREFGMTAIANGIALHGGFLP-YTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVAS 481 (663)
T ss_pred CeEeeccchhhHHHHHhhHHhcCCCeE-EEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHH
Confidence 555 34679999999999999767433 344555655677789988889999998877544333322 235899999999
Q ss_pred hccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 131 VKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 131 ~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+|.+-.-... +.+..++ ..+++.|...+.||+||.++..
T Consensus 482 lR~iPn~~V~~PaD~~E~----~~~~~~a~~~~~gP~yirl~R~ 521 (663)
T PRK12754 482 LRVTPNMSTWRPCDQVES----AVAWKYGVERQDGPTALILSRQ 521 (663)
T ss_pred HhcCCCcEEecCCCHHHH----HHHHHHHHhCCCCCEEEEeCCC
Confidence 9998765443 3344444 4555555555469999999975
No 178
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=93.89 E-value=0.49 Score=51.59 Aligned_cols=151 Identities=11% Similarity=0.060 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHhcC--CCEEEec----CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590 15 DGNTLAAKSLSLFG--ATHMFGV----VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (482)
Q Consensus 15 ~~~~~l~~~L~~~G--v~~vFgv----pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp 86 (482)
+..+++.+.|.+.. -..++++ +|+.. + +.+.+ ..-+++. .--|++++.+|.|.|.. |...++.+ ..+
T Consensus 320 ~~~~~f~~~L~~la~~d~~iv~isadl~~~~~--~-~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~-G~~P~v~~-f~~ 394 (641)
T PRK12571 320 SYTSVFGEELTKEAAEDSDIVAITAAMPLGTG--L-DKLQKRFPNRVFDVGIAEQHAVTFAAGLAAA-GLKPFCAV-YST 394 (641)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEeCCccCCCC--h-HHHHHhCCCcccccCccHHHHHHHHHHHHHC-CCEEEEEe-hHH
Confidence 55666666666553 2344444 33321 1 33332 2235553 36799999999999984 54344333 445
Q ss_pred hhHhhHHHHHH-hhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCc
Q 011590 87 GCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPG 164 (482)
Q Consensus 87 G~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~g 164 (482)
=+.-+...|.. +-..+.||+++..........-..||.+.++.+++.+-.+... +.++.++..+++.|+ ....+
T Consensus 395 Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~----~~~~~ 470 (641)
T PRK12571 395 FLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAA----AHDDG 470 (641)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hCCCC
Confidence 45567777744 6788999999873222211112357888889999999877554 456666666665555 32359
Q ss_pred eEEEEcCcch
Q 011590 165 GCYLDLPTDV 174 (482)
Q Consensus 165 Pv~l~iP~dv 174 (482)
|+||.+|...
T Consensus 471 P~~ir~~r~~ 480 (641)
T PRK12571 471 PIAVRFPRGE 480 (641)
T ss_pred cEEEEEecCc
Confidence 9999999763
No 179
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=93.85 E-value=1.6 Score=39.40 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=64.0
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCC-CcEEEEeCCCCccc-CC---CCCCCCcCHhhhhcccccee
Q 011590 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINT-WPIVMISGSCDQKD-FG---RGDFQELDQVEAVKPFSKFA 138 (482)
Q Consensus 64 ~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~-~Pvl~i~g~~~~~~-~~---~~~~q~~d~~~~~~~~~k~~ 138 (482)
.-+|.|.+.+..++.+|++--|- +.-.+..+..|...+ .|+++|.-+-.... .+ .......|...+.+.+.-..
T Consensus 48 lpaAiGa~la~~~~Vv~i~GDG~-f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~ 126 (181)
T TIGR03846 48 SSIGLGLALATDRTVIVIDGDGS-LLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRN 126 (181)
T ss_pred HHHHHHHHHcCCCcEEEEEcchH-HHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCe
Confidence 34567776666788887775553 332346788887777 59999885443211 11 01112456677777765555
Q ss_pred ee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 139 VK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 139 ~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+ +++++++.+.+ + +.. .+||..|++..|-
T Consensus 127 ~~~v~~~~~l~~al----~-a~~-~~~p~li~v~~~~ 157 (181)
T TIGR03846 127 VEKVADEEELRDAL----K-ALA-MKGPTFIHVKVKP 157 (181)
T ss_pred EEEeCCHHHHHHHH----H-HHc-CCCCEEEEEEeCC
Confidence 55 77777665555 3 333 3489999998763
No 180
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.84 E-value=0.42 Score=51.69 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=60.2
Q ss_pred CCCCcccHHHHHHHHHhccCCCCcEEEeCchhHH----HHHHH--h--hhcC-----CCCee---ecCCCCCcccchHHH
Q 011590 377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM----DVGRA--V--LVQT-----EPRCR---LDAGTWGTMGVGLGY 440 (482)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~----~~~~~--~--~~~~-----~~~~~---~~~~~~g~mG~~l~~ 440 (482)
..++...+.-.|...++ .|.|.++.+.|-..+ ..+|. + ++.. .|... ....+.|++|.++++
T Consensus 108 ssLs~vEl~~aL~~vf~--~p~DriI~s~GHqaya~~~ltgr~~~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~ 185 (641)
T PLN02234 108 SNLGVVELTVALHYIFN--TPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSA 185 (641)
T ss_pred ccchHHHHHHHHHHhcC--CCCCeEEEecchhHHHHHHHHhhhhhhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHH
Confidence 34676777777777665 277777776653221 11111 1 0111 01100 011246999999999
Q ss_pred HHHHhhhC----CCCcEEEEEcchhccCChH--HHHHHHHcCccccc
Q 011590 441 CIAAAIAC----PERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISS 481 (482)
Q Consensus 441 AiGaala~----p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~~ 481 (482)
|+|.|+|. .+.+|++++|||.+.-... .+..+.+++-++++
T Consensus 186 a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nliv 232 (641)
T PLN02234 186 GLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIV 232 (641)
T ss_pred HHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEE
Confidence 99988885 3568999999999875432 34455555545544
No 181
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.79 E-value=0.44 Score=43.22 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=66.3
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-----C----CCCCCCcCHhhhhccc
Q 011590 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-----G----RGDFQELDQVEAVKPF 134 (482)
Q Consensus 65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-----~----~~~~q~~d~~~~~~~~ 134 (482)
-+|.|.+.+. +|+.++++--| ++.-.+..+.+|...++|+++|.-.-..... + ...++..|...+.+.+
T Consensus 57 ~~aiGaala~~~~~vv~i~GDG-~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~ 135 (183)
T cd02005 57 PAALGAALAAPDRRVILLVGDG-SFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVF 135 (183)
T ss_pred HHHHHHHHhCCCCeEEEEECCc-hhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHh
Confidence 3456666555 36666666544 3444456788999999999999875543211 0 0112335667777776
Q ss_pred c----ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 135 S----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 135 ~----k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
. -+..++.+++++.+.+++|++ .. .||+.|++..|
T Consensus 136 G~~~~~~~~~v~~~~el~~al~~a~~---~~-~~p~liev~~~ 174 (183)
T cd02005 136 GGGGGGLSFRVKTEGELDEALKDALF---NR-DKLSLIEVILP 174 (183)
T ss_pred CCCccccEEEecCHHHHHHHHHHHHh---cC-CCcEEEEEEcC
Confidence 5 456778887777666666664 13 48999999875
No 182
>PRK08611 pyruvate oxidase; Provisional
Probab=93.74 E-value=0.7 Score=49.95 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=75.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CC----CCCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GR----GDFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~----~~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +|+.++++--| |+.-.+..|..|...++|+++|.-+-..... +. ..++..|...
T Consensus 413 glpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~ 491 (576)
T PRK08611 413 GLPGAIAAKIAFPDRQAIAICGDG-GFSMVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAK 491 (576)
T ss_pred hHHHHHHHHHhCCCCcEEEEEccc-HHhhhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 344567777765 67888887666 4555568999999999999888876543210 11 1134567788
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.+.....++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 492 lA~a~G~~~~~v~~~~eL~~al~~a~----~~-~~p~lIeV~vd~ 531 (576)
T PRK08611 492 FAEACGGKGYRVEKAEELDPAFEEAL----AQ-DKPVIIDVYVDP 531 (576)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeCC
Confidence 88888778889999888877777665 33 489999999874
No 183
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.73 E-value=0.48 Score=51.70 Aligned_cols=152 Identities=14% Similarity=0.013 Sum_probs=94.8
Q ss_pred CcHHHHHHHHHHhcCC--CEEEec----CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 14 IDGNTLAAKSLSLFGA--THMFGV----VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv--~~vFgv----pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
.+.++++.+.|.+..- +.|+.+ +|+.-+ +.+.+ -.-+++. .--|++++.+|.|.|...-||.+++ ..
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl---~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~--fs 430 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YS 430 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccch---HHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEe--cH
Confidence 4677788888877643 344444 333222 22322 2344443 3679999999999999766666554 44
Q ss_pred hhhHhhHHHH-HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCC
Q 011590 86 PGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 86 pG~~N~~~ai-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+=+.-++.-| ..+...+.||+++..........-..||.+....+++.+..+.... .++.++..+++.|+ ...+
T Consensus 431 ~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al----~~~~ 506 (677)
T PLN02582 431 SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAA----AIDD 506 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH----hCCC
Confidence 4344555544 5566789999988543322221223578877888999988776654 45566655555554 3345
Q ss_pred ceEEEEcCcch
Q 011590 164 GGCYLDLPTDV 174 (482)
Q Consensus 164 gPv~l~iP~dv 174 (482)
+|+||.+|...
T Consensus 507 gPv~IR~pr~~ 517 (677)
T PLN02582 507 RPSCFRYPRGN 517 (677)
T ss_pred CCEEEEEecCC
Confidence 99999999864
No 184
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=93.71 E-value=0.088 Score=48.28 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=37.3
Q ss_pred CCCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590 430 TWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS 480 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~ 480 (482)
..||+|-|++.|+|.|++ ..+.+|.+++|||-+.=... .+.++++|+|.=+
T Consensus 117 stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NL 173 (243)
T COG3959 117 STGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNL 173 (243)
T ss_pred cCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcE
Confidence 358888877777776665 45679999999998865532 5677778888533
No 185
>PRK05261 putative phosphoketolase; Provisional
Probab=93.69 E-value=1.9 Score=47.70 Aligned_cols=210 Identities=16% Similarity=0.089 Sum_probs=113.1
Q ss_pred CcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhh---------------hCCCcEEEEeCCCCccc
Q 011590 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGM---------------INTWPIVMISGSCDQKD 116 (482)
Q Consensus 52 i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~---------------~~~~Pvl~i~g~~~~~~ 116 (482)
-++|....|..++.++.||.. +|+.+.+. |+. .+...+-.+.+++ ..++. +++|...-.-.
T Consensus 450 Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~~qg 525 (785)
T PRK05261 450 GRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVWRQD 525 (785)
T ss_pred CCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeecceeecC
Confidence 477778899999999999999 89887754 443 4554444455544 34444 44444332222
Q ss_pred CCCCCCCC---cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccccChhHH-HHHHHhhh
Q 011590 117 FGRGDFQE---LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA-EKLLKEAE 192 (482)
Q Consensus 117 ~~~~~~q~---~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~-~~~~~~~~ 192 (482)
..-..||. +|++...++=.-..+++.+..++. .|+++|+..+.+|..|.+...-+.+....... .....
T Consensus 526 hNG~THQ~Pg~ie~l~~~r~~~~rV~rPaDaNe~l----aa~~~al~s~~~p~~IvlsRQ~lp~~~~~~~a~~~~~k--- 598 (785)
T PRK05261 526 HNGFSHQDPGFIDHVANKKPDVIRVYLPPDANTLL----AVADHCLRSRNYINVIVAGKQPRPQWLSMDEARKHCTK--- 598 (785)
T ss_pred CCCCCCCCchHHHHHHhcCCCcceEEeCCCHHHHH----HHHHHHHHhCCCCEEEEEeCCCCcccCChHHHHHhccC---
Confidence 22235888 888888888555666665555543 55566666667899998887543322221110 00000
Q ss_pred hhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccc-cHHHHHHHHHH---hCCcEeeCCC-CCCCCCCCCCccc
Q 011590 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR-AEGELKKLVES---TGIPFLPTPM-GKGLLPDTHPLAA 267 (482)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~-~~~~l~~lae~---~g~pv~~t~~-~~g~~~~~hp~~~ 267 (482)
.-+... ...+ + ...+.-++|++.|.-..- +.++...|.++ +++-|+.-.. -+---++.||..+
T Consensus 599 -Gayi~~-~a~~-~---------~~~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~l 666 (785)
T PRK05261 599 -GLGIWD-WASN-D---------DGEEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGL 666 (785)
T ss_pred -ceEEEE-eccC-C---------CCCCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCC
Confidence 000000 0000 0 011345677766653332 44555566555 4455554321 1112345788887
Q ss_pred chHHHHhhhcCC--EEEEe
Q 011590 268 TAARSLAIGQCD--VALVV 284 (482)
Q Consensus 268 G~~~~~~l~~aD--lvl~i 284 (482)
....-+.|-..| +|+.+
T Consensus 667 sd~~f~~lFt~d~pvif~~ 685 (785)
T PRK05261 667 SDREFDALFTTDKPVIFAF 685 (785)
T ss_pred CHHHHHHhCCCCCcEEEEe
Confidence 765555555566 66655
No 186
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=93.57 E-value=0.079 Score=51.15 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
+...+++||++|+||+++..+.....+.. ...++++|.||.++........++.+.+++.+++. +++.++.
T Consensus 193 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~~~ 264 (271)
T PTZ00409 193 AEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDILKG 264 (271)
T ss_pred HHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHhcc
Confidence 34577899999999999976543322111 13578899999988765433358899999998885 5565543
No 187
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=93.41 E-value=0.088 Score=51.36 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=47.4
Q ss_pred CCcccchHHHHHHHhhhCCCCcEEEEEcch-hccCChHHHHHHHHcCcccccC
Q 011590 431 WGTMGVGLGYCIAAAIACPERLVVAVEGDS-GFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDG-sf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.+..|-+.+.|.|.++|+++..||++.||| ++-...+.|.-+.|.|..|++|
T Consensus 69 hs~~gra~a~atGik~A~~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~i 121 (294)
T COG1013 69 HSLHGRAAAVATGIKLANPALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYI 121 (294)
T ss_pred eeccCcchhhHHHHHHhccCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEE
Confidence 466788999999999999999999999999 8889999999999999988764
No 188
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=93.30 E-value=0.096 Score=49.73 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=48.6
Q ss_pred HhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 273 LAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
.++++||++|+||+++........+.. -..+++++.||.++..... ..++.+.+++.++|++|.+++.
T Consensus 168 ~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~-~~~~~i~g~~~~~l~~l~~~~~ 236 (242)
T PTZ00408 168 SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYS-QFDESIYGKASVIVPAWVDRVL 236 (242)
T ss_pred HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCc-cCCEEEECCHHHHHHHHHHHHH
Confidence 568899999999999875432211110 1357889999998865542 2367788999999999987663
No 189
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=93.30 E-value=0.078 Score=52.24 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.3
Q ss_pred CCcccchHHHHHHHhhhCCCCcEEEEEcchhcc
Q 011590 431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFG 463 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~ 463 (482)
.|-+||++.-|.||++-+||.-|+|++|||.+-
T Consensus 139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaE 171 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAE 171 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGG
T ss_pred CcchhhHHHHHhhcccCCCCeEEEEEecCCccc
Confidence 588999999999999999999999999999863
No 190
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=93.29 E-value=1.5 Score=44.17 Aligned_cols=153 Identities=10% Similarity=0.031 Sum_probs=89.8
Q ss_pred ccCCcHHHHHHHHHHhcCC--CEEEecCCc-----ChHHHHHHHH-hC-CCcEEec-CchHHHHHHHHHHHhHhCCcEEE
Q 011590 11 NAQIDGNTLAAKSLSLFGA--THMFGVVGI-----PVTSLANRAV-QL-GVRFIAF-HNEQSAGYAASAYGYLTGKPGIL 80 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv--~~vFgvpG~-----~~~~l~~al~-~~-~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~ 80 (482)
+++++..+++.+.|.+..- +.++.+..+ ..+...+.+. +. .-+++.+ -.|++++.+|.|.|....||-+.
T Consensus 24 ~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~ 103 (356)
T PLN02683 24 AKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVE 103 (356)
T ss_pred ccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEE
Confidence 4456777777777777643 345554432 1222233332 33 3667743 78999999999999987777665
Q ss_pred EEcCChhhHhhHHHHHH-hhhC--------CCcEEEEeCCCCcccCCCC-CCCCcCHhhhhccccceeeec-CCcCcHHH
Q 011590 81 LTVSGPGCVHGLAGLSN-GMIN--------TWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKA-KDITEVPK 149 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~-A~~~--------~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~ 149 (482)
+..+ -=+..++--|.+ +... +.||+++.... . ..|.+ .||..+ ..+++.+-...... .++.++..
T Consensus 104 ~~~~-~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G-~-~~g~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~ 179 (356)
T PLN02683 104 FMTF-NFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNG-A-AAGVGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARG 179 (356)
T ss_pred Eehh-hHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCC-C-CCCCCCccccCH-HHHHhcCCCCEEEEeCCHHHHHH
Confidence 4321 112344444322 2222 38999886542 2 12223 355556 69999987776654 45666655
Q ss_pred HHHHHHHHhhcCCCceEEEEcCc
Q 011590 150 CVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 150 ~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+++.|+ .. +||+||..+.
T Consensus 180 ~l~~a~----~~-~gPv~ir~~~ 197 (356)
T PLN02683 180 LLKAAI----RD-PDPVVFLENE 197 (356)
T ss_pred HHHHHH----hC-CCcEEEEEeh
Confidence 555444 33 4999997543
No 191
>PRK05261 putative phosphoketolase; Provisional
Probab=93.25 E-value=0.078 Score=58.15 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=30.4
Q ss_pred CCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590 431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf 462 (482)
.|.+|++++.|+|+++.+++..|++++|||.+
T Consensus 141 ~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~ 172 (785)
T PRK05261 141 GGELGYSLSHAYGAAFDNPDLIVACVVGDGEA 172 (785)
T ss_pred CCchhhHHHHHHHHHHcCCCCEEEEEECcCch
Confidence 59999999999999999999999999999993
No 192
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=93.18 E-value=2 Score=48.34 Aligned_cols=176 Identities=16% Similarity=0.090 Sum_probs=96.5
Q ss_pred CcEEe-cCchHHHHH--HHHHHHhH-hCCcEE-EEEcCCh-hhHhhHHHHHHhhhCCCc-EEEEeCCCCcccCCCC-CCC
Q 011590 52 VRFIA-FHNEQSAGY--AASAYGYL-TGKPGI-LLTVSGP-GCVHGLAGLSNGMINTWP-IVMISGSCDQKDFGRG-DFQ 123 (482)
Q Consensus 52 i~~v~-~~~E~~A~~--~A~g~ar~-tgk~~v-~~~t~Gp-G~~N~~~ai~~A~~~~~P-vl~i~g~~~~~~~~~~-~~q 123 (482)
=+++. --.|+++.. +|.|-++. .|++.+ +..|..+ |+.=+.--+-.|-..+.+ +++++.......-+.| .||
T Consensus 573 gR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ 652 (896)
T PRK13012 573 GQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQ 652 (896)
T ss_pred CcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCc
Confidence 35553 468999944 56666554 344322 3333333 232333333333333444 4444443333333333 478
Q ss_pred CcCHhhhhccccc-eeeecCCcCcHHHHHHHHHHHhhc-CCCceEEEEcCcchhcc-ccChhHHHHHHHhhhhhcccccC
Q 011590 124 ELDQVEAVKPFSK-FAVKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPTDVLHQ-TISVSEAEKLLKEAESAKETVTQ 200 (482)
Q Consensus 124 ~~d~~~~~~~~~k-~~~~~~~~~~~~~~l~~A~~~a~~-~~~gPv~l~iP~dv~~~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (482)
.++...+++.+.. -++++.+..++..+++.+++.+.. ...+|+||.+...-..+ ..++....
T Consensus 653 ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~~~~~~~--------------- 717 (896)
T PRK13012 653 DGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPALPEGAEE--------------- 717 (896)
T ss_pred chHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCCCccchh---------------
Confidence 8888889999865 455667778888888888877533 34589999997543221 11111000
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 201 GGIVNSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 201 ~~~~~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
.+.+-...|...+ .-+.|+|.|.-...+.++...|++.+|+.
T Consensus 718 ------~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~ 761 (896)
T PRK13012 718 ------GILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVD 761 (896)
T ss_pred ------ccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCC
Confidence 0111111122212 25788888876667777788888887764
No 193
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=93.16 E-value=0.75 Score=49.64 Aligned_cols=153 Identities=13% Similarity=0.044 Sum_probs=91.1
Q ss_pred CCcHHHHHHHHHHhcCCC--EEEec----CCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590 13 QIDGNTLAAKSLSLFGAT--HMFGV----VGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVS 84 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~--~vFgv----pG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~ 84 (482)
+++..+++.+.|.+..-+ .++.+ +|... + +.+.+ -.-+++. ---|++++.+|.|.+...-||- | .+.
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pv-v-~~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPV-I-FVN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEE-E-Eee
Confidence 446667776777665432 34433 22321 2 33322 2235553 3579999999999998544444 3 333
Q ss_pred ChhhHhhHHHHH-HhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCC
Q 011590 85 GPGCVHGLAGLS-NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGR 162 (482)
Q Consensus 85 GpG~~N~~~ai~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~ 162 (482)
.+=+..++--|. .+-..+.||+++........ .-..||.+.++++++.+...... +.++.++..+++.|+ ...
T Consensus 352 s~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~----~~~ 426 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWAL----TQH 426 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHH----hCC
Confidence 332334444332 24567899999976332222 23457888889999999887764 455666655555554 433
Q ss_pred CceEEEEcCcchh
Q 011590 163 PGGCYLDLPTDVL 175 (482)
Q Consensus 163 ~gPv~l~iP~dv~ 175 (482)
+||+||.+|....
T Consensus 427 ~gP~~ir~~r~~~ 439 (581)
T PRK12315 427 EHPVAIRVPEHGV 439 (581)
T ss_pred CCcEEEEEcCCcc
Confidence 5999999998643
No 194
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=93.14 E-value=1.3 Score=43.46 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCC--CEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590 16 GNTLAAKSLSLFGA--THMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv--~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~ 92 (482)
.-..+.+.|.+.|+ +.+.-+.|.......-... +...+...|- .+.-+|.|...+. .++.++++--|-...-.+
T Consensus 29 i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl--~~~~~~g~mG-~alpaAiGaklA~pd~~VV~i~GDG~~~~mg~ 105 (301)
T PRK05778 29 ILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYF--LSHGLHTLHG-RAIAFATGAKLANPDLEVIVVGGDGDLASIGG 105 (301)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhc--ccCccchhhc-cHHHHHHHHHHHCCCCcEEEEeCccHHHhccH
Confidence 44677888888876 3444444544332111111 1122222332 2445677877765 456666665543334556
Q ss_pred HHHHHhhhCCCcEEEEeCCCCccc-----------CCC-------CC-CCCcCHhhhhcccc-ceee--ecCCcCcHHHH
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKD-----------FGR-------GD-FQELDQVEAVKPFS-KFAV--KAKDITEVPKC 150 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~-----------~~~-------~~-~q~~d~~~~~~~~~-k~~~--~~~~~~~~~~~ 150 (482)
..+..|...++|+++|.-+-.... .+. +. ...+|...+.+... .+.. ++.+++++.++
T Consensus 106 ~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~a 185 (301)
T PRK05778 106 GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVEL 185 (301)
T ss_pred HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHH
Confidence 789999999999999986443210 110 00 12356666666653 2322 56677776666
Q ss_pred HHHHHHHhhcCCCceEEEEcCcc
Q 011590 151 VAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 151 l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
|.+|+ .. +||++|+|...
T Consensus 186 i~~A~----~~-~GpalIeV~~~ 203 (301)
T PRK05778 186 IKKAI----SH-KGFAFIDVLSP 203 (301)
T ss_pred HHHHH----hC-CCCEEEEEcCC
Confidence 66655 43 49999987554
No 195
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=93.11 E-value=0.33 Score=51.01 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCcccchHHHHHHHhhh----CCCCcEEEEEcchhcc--CChHHHHHHH
Q 011590 431 WGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFG--FSAVEVEVWL 473 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~--~~~~eL~T~~ 473 (482)
-|.-+.++++|+|.|.| ..++.||+++|||++- |....|-.+-
T Consensus 114 ~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag 162 (627)
T COG1154 114 VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAG 162 (627)
T ss_pred cCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhh
Confidence 35556688888887766 4578999999999873 4444555554
No 196
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=93.10 E-value=0.083 Score=49.64 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=45.4
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCC--CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHH
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPK--WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMI 336 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~--~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L 336 (482)
.+.++++|++|+||+++.-.. ...... -.+++++|.||.++.... ...++.+.+|+.++|++|
T Consensus 159 ~~~~~~~dl~lvlGTsl~v~p-~~~l~~~~~~~~~~~i~iN~~~~~~~-~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 159 VEALAKADLFLVIGTSGVVYP-AAGLPEEAKERGARVIEINPEPTPLS-PIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHcCCEEEEECcCccchh-HHHHHHHHHHCCCeEEEECCCCCCCC-CcCCEEEECCHHHHHHHh
Confidence 356779999999999876432 222111 135788999999887664 334889999999999886
No 197
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=93.07 E-value=0.39 Score=52.19 Aligned_cols=100 Identities=15% Similarity=0.013 Sum_probs=59.4
Q ss_pred CCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHhhhcC----CCCee-------------ecCCCCCcccchHHHH
Q 011590 379 FNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT----EPRCR-------------LDAGTWGTMGVGLGYC 441 (482)
Q Consensus 379 ~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~~~~~----~~~~~-------------~~~~~~g~mG~~l~~A 441 (482)
+....+--.|+.+++. |.|.|+.+.| +..++-. +|..+ ..|++ +...+-|.-+.++++|
T Consensus 123 LGvVELTvALH~VFd~--p~DkiiwDvg-HQ~Y~HK-iLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaa 198 (701)
T PLN02225 123 FAAIELTLALHYVFRA--PVDNILWDAV-EQTYAHK-VLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAG 198 (701)
T ss_pred ccHHHHHHHHHHHhCC--CCCceeeccc-cccchhh-HhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHH
Confidence 5555666678888853 7777777665 3322212 12211 11221 1122235556689999
Q ss_pred HHHhhhC----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590 442 IAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 442 iGaala~----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~ 482 (482)
+|.|.|+ .++.||+++|||++- |..-.|-.+...+-++++|
T Consensus 199 lG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livI 245 (701)
T PLN02225 199 LGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVI 245 (701)
T ss_pred HHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEE
Confidence 9988884 567999999999974 4444566666666565543
No 198
>PRK05899 transketolase; Reviewed
Probab=93.05 E-value=0.62 Score=50.83 Aligned_cols=116 Identities=13% Similarity=0.040 Sum_probs=78.4
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-CCCCCCCcCHh
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-GRGDFQELDQV 128 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~~~~~q~~d~~ 128 (482)
-+++. .--|++++.+|.|++... -||-+ .|..+=+.-++..|..+...+.|++++........- .-..||.++..
T Consensus 367 ~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edi 444 (624)
T PRK05899 367 GRYIHYGVREFAMAAIANGLALHGGFIPFG--GTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL 444 (624)
T ss_pred CCeeeeChhHHHHHHHHHHHHHcCCCeEEE--EEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHH
Confidence 35564 578999999999999876 34333 333343456667777777789999999754433222 22357888888
Q ss_pred hhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 129 EAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 129 ~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+++.+..... .+.++.++..+++.|+ ...++|+||.+|..
T Consensus 445 a~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 486 (624)
T PRK05899 445 ASLRAIPNLTVIRPADANETAAAWKYAL----ERKDGPSALVLTRQ 486 (624)
T ss_pred HHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcCCCCEEEEEeCC
Confidence 89999877654 3456666666665555 33359999999864
No 199
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=92.82 E-value=1.7 Score=42.06 Aligned_cols=147 Identities=15% Similarity=0.100 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCC---EEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590 17 NTLAAKSLSLFGAT---HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~---~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~ 92 (482)
-.+|-+.|.+.|++ .++...-+....+... -+...+...| ..+.-+|.|...+. .++.++++--|-++.-.+
T Consensus 19 l~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~---~~~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig~ 94 (279)
T PRK11866 19 LEALRKALAELGIPPENVVVVSGIGCSSNLPEF---LNTYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGIGL 94 (279)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCchhhhhhhh---ccCCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHccH
Confidence 35677778887753 4444333332221111 1233445566 44556678888875 567777776665677888
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcc---------cCCCCC------C----CCcCHhhhhccc-cceeeec--CCcCcHHHH
Q 011590 93 AGLSNGMINTWPIVMISGSCDQK---------DFGRGD------F----QELDQVEAVKPF-SKFAVKA--KDITEVPKC 150 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~---------~~~~~~------~----q~~d~~~~~~~~-~k~~~~~--~~~~~~~~~ 150 (482)
+.|..|...++|+++|.-+-... ..+.+. + ..+|...+.+.+ +.|..+. .++++
T Consensus 95 ~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~---- 170 (279)
T PRK11866 95 GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH---- 170 (279)
T ss_pred HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH----
Confidence 99999999999999987543211 111000 0 113666666654 2344343 33444
Q ss_pred HHHHHHHhhcCCCceEEEEcCc
Q 011590 151 VAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 151 l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+.++++.|... +||++|++=.
T Consensus 171 l~~~l~~Al~~-~Gps~I~v~~ 191 (279)
T PRK11866 171 LKEIIKEAIKH-KGFSFIDVLS 191 (279)
T ss_pred HHHHHHHHHhC-CCCEEEEEeC
Confidence 45555555554 4999988754
No 200
>PRK12753 transketolase; Reviewed
Probab=92.82 E-value=0.097 Score=57.21 Aligned_cols=50 Identities=20% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI 479 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i 479 (482)
..|++|.+++.|+|.|+|.. +..|++++|||+++=... .+..+.+++||-
T Consensus 112 ~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~n 177 (663)
T PRK12753 112 TTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGK 177 (663)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCC
Confidence 46899999999999998842 468999999999875543 466677899973
No 201
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.78 E-value=0.43 Score=51.70 Aligned_cols=108 Identities=9% Similarity=0.149 Sum_probs=76.3
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---C-CC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---G-DF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~-~~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| |+.-.+..|.+|...++|+++|.-.-.... .+. + .+ +..|.
T Consensus 440 glp~aiGa~la~p~r~vv~i~GDG-~f~~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~ 518 (588)
T PRK07525 440 AFPAIIGAKIACPDRPVVGFAGDG-AWGISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSY 518 (588)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCc-hHhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 445677777765 68888888877 555557899999999999999986543221 000 0 12 23577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..+.+.+.-+..++++++++...+.+|+... . +.||+.|++..|
T Consensus 519 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~~-~-~~~p~lIev~~~ 562 (588)
T PRK07525 519 AGIAEAMGAEGVVVDTQEELGPALKRAIDAQ-N-EGKTTVIEIMCN 562 (588)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhcC-C-CCCcEEEEEEec
Confidence 7788888777788988888777777766543 1 238999999987
No 202
>PRK06163 hypothetical protein; Provisional
Probab=92.77 E-value=7.9 Score=35.64 Aligned_cols=104 Identities=19% Similarity=0.114 Sum_probs=64.7
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhh-CCCcEEEEeCCCCcccC-C---CCCCCCcCHhhhhccccce
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMI-NTWPIVMISGSCDQKDF-G---RGDFQELDQVEAVKPFSKF 137 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~-~~~Pvl~i~g~~~~~~~-~---~~~~q~~d~~~~~~~~~k~ 137 (482)
.-+|.|.+.+. +|+.+|++--| |+.=.+..|..+.. .++|+++|.-+-..... + ....+..|...+.+.+.-.
T Consensus 63 lpaAiGaalA~p~r~Vv~i~GDG-~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~ 141 (202)
T PRK06163 63 FPIALGVALAQPKRRVIALEGDG-SLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLE 141 (202)
T ss_pred HHHHHHHHHhCCCCeEEEEEcch-HHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCc
Confidence 33566666654 45666666443 34444578888754 47888888876532221 1 1112335766777776554
Q ss_pred -eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 138 -AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 138 -~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..++++++++...+++|+ . ..||+.|++..|
T Consensus 142 ~~~~v~~~~el~~al~~a~----~-~~~p~lIeV~i~ 173 (202)
T PRK06163 142 NSHWAADEAHFEALVDQAL----S-GPGPSFIAVRID 173 (202)
T ss_pred eEEEeCCHHHHHHHHHHHH----h-CCCCEEEEEEec
Confidence 567888888777776665 3 358999999876
No 203
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=92.72 E-value=0.12 Score=56.17 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=62.6
Q ss_pred CCCCcccHHHHHHHHHhccCCCCcEEEeCchhHHHHHHHh---------hhcCCC-----C---eeecCCCCCcccchHH
Q 011590 377 VPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAV---------LVQTEP-----R---CRLDAGTWGTMGVGLG 439 (482)
Q Consensus 377 ~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~~~~~~~~~~---------~~~~~~-----~---~~~~~~~~g~mG~~l~ 439 (482)
..++...+.-.|...++ .|.|.++++.|- ..+....+ ++.... . +-....+.|++|.+++
T Consensus 75 ~~Ls~vel~~aL~~~~~--~p~Dr~i~s~GH-~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls 151 (677)
T PLN02582 75 SSLGVVELTVALHYVFN--APQDKILWDVGH-QSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTIS 151 (677)
T ss_pred ccccHHHHHHHHHHhhC--CCCCeEEEECcc-hHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHH
Confidence 35677777777777664 266666666542 22211111 111100 0 0111124688999999
Q ss_pred HHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590 440 YCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 482 (482)
Q Consensus 440 ~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~ 482 (482)
.|+|.|+|. .++.|++++|||++.-.. -.|-.+..+++|+++|
T Consensus 152 ~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~i 200 (677)
T PLN02582 152 AGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVI 200 (677)
T ss_pred HHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEE
Confidence 999998884 467899999999987543 2455666778887754
No 204
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=92.72 E-value=0.12 Score=56.12 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=41.2
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~ 482 (482)
..|++|.+++.|+|.|+|. ++..|++++|||+++-.. -.+..+..+++|+++|
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~i 167 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVI 167 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEE
Confidence 4577888999999988885 567899999999987543 3566677889988553
No 205
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=92.69 E-value=2.4 Score=46.00 Aligned_cols=152 Identities=11% Similarity=-0.025 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHhcCCC--EEEe----cCCcChHHHHHHHH-hCCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 14 IDGNTLAAKSLSLFGAT--HMFG----VVGIPVTSLANRAV-QLGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~--~vFg----vpG~~~~~l~~al~-~~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
++..+++.+.|.+..-+ .|+. ++|+..+ +.+. +-.-+++. .--|++++.+|.|.|...-||-+++ ..
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~---~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~--fs 431 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTML---NLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI--YS 431 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcch---HHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEe--hH
Confidence 56777777777765432 2332 2333322 2232 22234443 3579999999999999755655554 33
Q ss_pred hhhHhhHHHH-HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCC
Q 011590 86 PGCVHGLAGL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 86 pG~~N~~~ai-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
+=+.-++--| ..+...+.||+++..........-..||......+++.+-...... .++.++..+ ++.|...+.
T Consensus 432 ~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~----l~~a~~~~~ 507 (641)
T PLN02234 432 SFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNM----VATAAAIDD 507 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHH----HHHHHhCCC
Confidence 3233444444 2346789999888632222111123477777788888887766544 445555444 444444345
Q ss_pred ceEEEEcCcch
Q 011590 164 GGCYLDLPTDV 174 (482)
Q Consensus 164 gPv~l~iP~dv 174 (482)
+|+|+.+|...
T Consensus 508 ~Pv~ir~~R~~ 518 (641)
T PLN02234 508 RPSCFRYHRGN 518 (641)
T ss_pred CCEEEEeeccc
Confidence 99999999864
No 206
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=92.68 E-value=2.9 Score=37.66 Aligned_cols=101 Identities=12% Similarity=0.128 Sum_probs=59.0
Q ss_pred HHHHHHHhHhCCcEEEEEcCChhhHh-hHHHHHHhhhCCC-cEEEEeCCCCcc-cCCC---CCCCCcCHhhhhcccccee
Q 011590 65 YAASAYGYLTGKPGILLTVSGPGCVH-GLAGLSNGMINTW-PIVMISGSCDQK-DFGR---GDFQELDQVEAVKPFSKFA 138 (482)
Q Consensus 65 ~~A~g~ar~tgk~~v~~~t~GpG~~N-~~~ai~~A~~~~~-Pvl~i~g~~~~~-~~~~---~~~q~~d~~~~~~~~~k~~ 138 (482)
-+|.|.+.+..++.+|++ |=|... .+..+.++...+. |++++.-+-... ..+. ......|...+.+.+.-..
T Consensus 49 p~AiGaala~~~~vv~i~--GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 126 (179)
T cd03372 49 SIGLGLALAQPRKVIVID--GDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDN 126 (179)
T ss_pred HHHHHHHhcCCCcEEEEE--CCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCe
Confidence 456666665446666665 444443 3678888888875 677776443221 1110 1112356666777765555
Q ss_pred eecC-CcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 139 VKAK-DITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 139 ~~~~-~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.++. +++++ ++|++.+. .||..|++..|-
T Consensus 127 ~~v~~~~~el----~~al~~a~---~gp~lIev~~~~ 156 (179)
T cd03372 127 VATVASEEAF----EKAVEQAL---DGPSFIHVKIKP 156 (179)
T ss_pred EEecCCHHHH----HHHHHHhc---CCCEEEEEEEcC
Confidence 5665 55554 55555554 389999998863
No 207
>PRK08617 acetolactate synthase; Reviewed
Probab=92.65 E-value=0.84 Score=49.05 Aligned_cols=102 Identities=24% Similarity=0.337 Sum_probs=71.6
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CC--C-CCCCcCHhhhhc
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GR--G-DFQELDQVEAVK 132 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~--~-~~q~~d~~~~~~ 132 (482)
+|.|.+.+. +|+.++++--| |+.-.++.|.+|...++|+++|.-.-.... . +. + .++..|...+.+
T Consensus 422 aaiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~ 500 (552)
T PRK08617 422 WAIAAALVRPGKKVVSVSGDG-GFLFSAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAE 500 (552)
T ss_pred HHHhhHhhcCCCcEEEEEech-HHhhhHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHH
Confidence 566666554 67888777655 455556899999999999998876553211 0 10 0 123467778888
Q ss_pred cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.-...++++++++.+.+++|+ . ..+|+.|++..|
T Consensus 501 a~G~~~~~v~~~~eL~~al~~a~----~-~~~p~liev~~~ 536 (552)
T PRK08617 501 SFGAKGLRVTSPDELEPVLREAL----A-TDGPVVIDIPVD 536 (552)
T ss_pred HCCCeEEEECCHHHHHHHHHHHH----h-CCCcEEEEEEec
Confidence 88888889999888877777776 3 348999999876
No 208
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.61 E-value=0.47 Score=51.14 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhH-HHHHHhhhCCCcEEEEeCCCCcccC---------CC-----------CC
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGL-AGLSNGMINTWPIVMISGSCDQKDF---------GR-----------GD 121 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~-~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~-----------~~ 121 (482)
.-+|.|.+.++ +|+.+|++--|-=..+.. ..+..|...++|+++|.-+-..... +. ..
T Consensus 436 lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (569)
T PRK08327 436 LGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTD 515 (569)
T ss_pred hHHHHHHhhcCCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCccccccccccccccc
Confidence 34566666654 677777775443222222 3477788899999999876642110 00 01
Q ss_pred C-CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 122 F-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 122 ~-q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+ ...|...+.+.+.-+..++++++++.+.+++|++...+++ ||+.|++..|
T Consensus 516 ~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~~~~~~~~-gp~liev~v~ 567 (569)
T PRK08327 516 FDPRPDFAKIAEAFGGYGERVEDPEELKGALRRALAAVRKGR-RSAVLDVIVD 567 (569)
T ss_pred CCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHHHHHhcCC-CcEEEEEEcc
Confidence 1 2357777888887788899999999999998887765544 8999999875
No 209
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=92.55 E-value=0.099 Score=57.10 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=40.2
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS 480 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~ 480 (482)
..|++|.+++.|+|.|+|.. +..|++++|||+++=... .+..+..++||-+
T Consensus 108 ~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nL 174 (653)
T TIGR00232 108 TTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKL 174 (653)
T ss_pred CCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcE
Confidence 35999999999999988842 567999999999876432 4666778999843
No 210
>PRK12754 transketolase; Reviewed
Probab=92.52 E-value=0.12 Score=56.29 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=40.7
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCcccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMIS 480 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~ 480 (482)
..|++|.+++.|+|.|+|.. +..|++++|||+++=... .+..+..++||-+
T Consensus 112 stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nL 178 (663)
T PRK12754 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKL 178 (663)
T ss_pred cCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCE
Confidence 36899999999999998832 567999999999886533 4666778999843
No 211
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=92.47 E-value=2.1 Score=41.56 Aligned_cols=147 Identities=14% Similarity=0.112 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCC---CEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHH
Q 011590 18 TLAAKSLSLFGA---THMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 18 ~~l~~~L~~~Gv---~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ 93 (482)
..+++.|.+.++ +.++. -|......+-.. -....+...| ..+.-+|.|..++. +++.++++--|-.......
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~~~~~~~--~~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g~~ 104 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCSGRFSSY--VNCNTVHTTH-GRAVAYATGIKLANPDKHVIVVSGDGDGLAIGGN 104 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHHHHhhcc--CCCCceeecc-ccHHHHHHHHHHHCCCCeEEEEECchHHHHhhHH
Confidence 567788888763 34433 333332221111 1233333334 24566788888875 5666666654432222234
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccC-----------C-------CCC-CCCcCHhhhhcccc-cee--eecCCcCcHHHHH
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDF-----------G-------RGD-FQELDQVEAVKPFS-KFA--VKAKDITEVPKCV 151 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~-----------~-------~~~-~q~~d~~~~~~~~~-k~~--~~~~~~~~~~~~l 151 (482)
.+..|...++|+++|.-+-..... + .+. ...+|...+.+.+. ++. .++.+++++.+.+
T Consensus 105 el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al 184 (277)
T PRK09628 105 HTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLL 184 (277)
T ss_pred HHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHH
Confidence 555689999999999854322110 0 001 12245566666653 232 4777777776666
Q ss_pred HHHHHHhhcCCCceEEEEcCcc
Q 011590 152 AQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 152 ~~A~~~a~~~~~gPv~l~iP~d 173 (482)
++|+ .. +||+.|++..+
T Consensus 185 ~~Al----~~-~Gp~lIeV~~~ 201 (277)
T PRK09628 185 VKGF----SH-KGFSFFDVFSN 201 (277)
T ss_pred HHHH----hC-CCCEEEEEcCC
Confidence 6665 43 49999988765
No 212
>PRK13761 hypothetical protein; Provisional
Probab=92.38 E-value=1.3 Score=40.78 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCC------------------CCCCC-CCc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG------------------LLPDT-HPL 265 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g------------------~~~~~-hp~ 265 (482)
..+.+.++.+|..|++|||=+-+.+. +-..+++.+||+.+|+++=...+.+- +.-.+ ...
T Consensus 54 ~~A~raAaA~LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLF~RT~eR~~~I~~~l~~~Ga~~vlG~~~~~~ 132 (248)
T PRK13761 54 LEAERAAAALLLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVNLFYRTEERVEKIAEVLREHGAKEVLGTDEDAR 132 (248)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHcCCceeeCCCCcCc
Confidence 45677788899999999999987764 46788999999999999865544210 00000 000
Q ss_pred ccc--h----HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHh
Q 011590 266 AAT--A----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKE 339 (482)
Q Consensus 266 ~~G--~----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~ 339 (482)
.-| . ...+-+-.||+|++= +.+-+..- ..-.-++++|.||.+|..-.....++.|+-++--++..|.+.
T Consensus 133 ip~L~~~R~~v~~~GIy~ADVVLVP---LEDGDR~E--aL~~mGK~VI~IDLNPLSRTar~A~itIVDni~RA~p~m~~~ 207 (248)
T PRK13761 133 IPGLDHERAKVSEDGIYSADVVLVP---LEDGDRTE--ALVKMGKTVIAIDLNPLSRTARTATITIVDNITRAVPNMTEY 207 (248)
T ss_pred CCCCCCccceECcccceeccEEEec---CCCCcHHH--HHHHcCCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHH
Confidence 000 0 011224456766653 22100000 001235789999999987766777999999988888887776
Q ss_pred hhc
Q 011590 340 IKD 342 (482)
Q Consensus 340 l~~ 342 (482)
.++
T Consensus 208 ~~e 210 (248)
T PRK13761 208 ARE 210 (248)
T ss_pred HHH
Confidence 543
No 213
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.36 E-value=0.42 Score=51.20 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=73.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC--C-CCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR--G-DFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~--~-~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +|+.++++--| ++.-....|.+|...++|+++|.-.-.... .++ + .+...|...
T Consensus 413 ~lpaaiGa~la~~~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~ 491 (539)
T TIGR02418 413 ALPWAIGAALVRPNTKVVSVSGDG-GFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVK 491 (539)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-hhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHH
Confidence 444677777654 57877777655 344445789999999999999987643211 010 0 223467788
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.+.+..+..++++++++.+.+++|+. ..||..|++..|
T Consensus 492 lA~a~G~~~~~V~~~~eL~~al~~a~~-----~~~p~lIev~v~ 530 (539)
T TIGR02418 492 YAESFGAKGLRVESPDQLEPTLRQAME-----VEGPVVVDIPVD 530 (539)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEec
Confidence 888888888999998888777777653 248999999876
No 214
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=92.31 E-value=0.098 Score=50.29 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=42.3
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCC-CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHH
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPP-KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVL 333 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~-~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l 333 (482)
+.+.+++||++|+||+++..+.....+. ....++++|.||.++...+. ..++.+.+++.++|
T Consensus 198 a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~-~a~~~i~~~~~~~l 260 (260)
T cd01409 198 AAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADH-LATLKVDARCGEVL 260 (260)
T ss_pred HHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCc-cccEEEeCChhhhC
Confidence 4467789999999999997543222111 11357899999998866542 24788888877653
No 215
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=92.30 E-value=0.66 Score=45.64 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g 246 (482)
..++++.+|++|+..+|+-|+|..-+.+...++++++++.
T Consensus 297 saedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~ 336 (463)
T COG1282 297 SAEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLR 336 (463)
T ss_pred CHHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHH
Confidence 4578899999999999999999988777777777777664
No 216
>PTZ00089 transketolase; Provisional
Probab=92.29 E-value=0.11 Score=56.75 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCChH--HHHHHHHcCccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMI 479 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i 479 (482)
..|++|.+++.|+|.|+|.. +..|++++|||+++=... .+..+..++||-
T Consensus 114 ~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~n 179 (661)
T PTZ00089 114 TTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEK 179 (661)
T ss_pred CCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCC
Confidence 36899999999999988852 567999999999875433 466677889873
No 217
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=92.02 E-value=0.13 Score=51.71 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=36.8
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCChHHHHH----HHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVEV----WLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~~eL~T----~~r~~l~i~~~ 482 (482)
..+.+|.++|.|+|+++|. .++.++++.|||+.. -.++|. +..+++|++.|
T Consensus 136 ~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~--eG~~~Ealn~A~~~~lPvvfv 194 (362)
T PLN02269 136 GHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAAN--QGQLFEALNIAALWDLPVIFV 194 (362)
T ss_pred cCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcc--cCHHHHHHHHhhccCcCEEEE
Confidence 3477888899999988884 467899999999943 334443 34578887653
No 218
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=91.97 E-value=1.5 Score=49.18 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=110.8
Q ss_pred CcEEe-cCchHHHHH--HHHHHHhH-hCCcEEEEE-cCCh-hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCC-C-CCC
Q 011590 52 VRFIA-FHNEQSAGY--AASAYGYL-TGKPGILLT-VSGP-GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR-G-DFQ 123 (482)
Q Consensus 52 i~~v~-~~~E~~A~~--~A~g~ar~-tgk~~v~~~-t~Gp-G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q 123 (482)
=+++. --.|++++. +|.|-++. .|++.+.++ +..+ |+.=+.--|-.|-..+.++.++.+.......+. | .||
T Consensus 560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq 639 (889)
T TIGR03186 560 GQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQ 639 (889)
T ss_pred CcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCccccc
Confidence 45553 478999987 88887775 455444443 3333 344555667777778889888888876643333 3 467
Q ss_pred CcCHhhhhccccce-eeecCCcCcHHHHHHHHHHHhhcC-CCceEEEEcCcchhccc-cChhHHHHHHHhhhhhcccccC
Q 011590 124 ELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSG-RPGGCYLDLPTDVLHQT-ISVSEAEKLLKEAESAKETVTQ 200 (482)
Q Consensus 124 ~~d~~~~~~~~~k~-~~~~~~~~~~~~~l~~A~~~a~~~-~~gPv~l~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~ 200 (482)
.+....+++.+-.. ++.+.++.++..++..+++.+... ..||+||.+...-...+ .+.......
T Consensus 640 ~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~~~~~~~~~------------- 706 (889)
T TIGR03186 640 DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSLPEDRLDAV------------- 706 (889)
T ss_pred chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCcCCCcccch-------------
Confidence 77778888887654 445667788999999999866654 46999999986522111 111000000
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 201 GGIVNSDIDKAVSLLKE---AKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 201 ~~~~~~~~~~~~~~L~~---a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+..+-+....|.. ...-+.|+|.|.....+.++...|++.+|+-
T Consensus 707 ----~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 753 (889)
T TIGR03186 707 ----RRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGID 753 (889)
T ss_pred ----hcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 0000011122331 1235788888877677778888888876654
No 219
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.94 E-value=0.27 Score=53.28 Aligned_cols=109 Identities=11% Similarity=0.015 Sum_probs=74.2
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC---C-CC-------
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---G-DF------- 122 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~---~-~~------- 122 (482)
.-+|.|.+.+. .|+.++++--| |+.=...-|.+|...++|+++|.-+-..... +. + .+
T Consensus 424 lpaaiGa~lA~pdr~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~ 502 (588)
T TIGR01504 424 IPAALGVCAADPKRNVVALSGDY-DFQFMIEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSE 502 (588)
T ss_pred HhHHHhhhhhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeecccccccc
Confidence 34455655554 46777776555 3434457899999999999999876543210 00 0 00
Q ss_pred ---CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 123 ---QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 123 ---q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
...|-..+.+.+..+..++++++++.+.+++|++..... .+|+.|++..|-
T Consensus 503 ~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~~~~~-~~p~lIeV~i~~ 556 (588)
T TIGR01504 503 VNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAKALMAEH-RVPVVVEVILER 556 (588)
T ss_pred ccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEecc
Confidence 125777888888888899999999888888877654323 389999999864
No 220
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=91.87 E-value=1.1 Score=45.01 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=61.9
Q ss_pred EEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCCcCHhhhhccccceeeecCCcCc--HHHH
Q 011590 78 GILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKFAVKAKDITE--VPKC 150 (482)
Q Consensus 78 ~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~~~~~~~~~~--~~~~ 150 (482)
.++++..|=|..|. ..++..|...++|+|+|.-+-......... ....|.....+.+.-...+++..+. +.+.
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a 224 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAV 224 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHH
Confidence 35555557777663 356778999999999999865321110000 1123555666666556667766654 4778
Q ss_pred HHHHHHHhhcCCCceEEEEcCcc
Q 011590 151 VAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 151 l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.+|++.|...+ ||+.|++-..
T Consensus 225 ~~~A~~~a~~~~-gP~lIev~t~ 246 (341)
T TIGR03181 225 TKEAVERARSGG-GPTLIEAVTY 246 (341)
T ss_pred HHHHHHHHHcCC-CCEEEEEEee
Confidence 888999898765 9999999654
No 221
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=91.83 E-value=0.9 Score=49.09 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=73.1
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCCC----CCCCcCHhhh
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRG----DFQELDQVEA 130 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~~----~~q~~d~~~~ 130 (482)
.-+|.|.+.+. +|+.+|++--| ++.-.+..|..|...++|+++|.-+-.... .+.. .++..|...+
T Consensus 414 ~paAiGa~la~p~~~vv~i~GDG-sf~~~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~l 492 (578)
T PRK06546 414 LPHAIGAQLADPGRQVISMSGDG-GLSMLLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAI 492 (578)
T ss_pred hHHHHHHHHhCCCCcEEEEEcCc-hHhhhHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHH
Confidence 34677877764 57777777555 344455788999999999999987554321 1100 1345677788
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.-...++++++++.+.+++|+. . .||+.|++..|-
T Consensus 493 A~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~lIev~~~~ 531 (578)
T PRK06546 493 AAALGIHAVRVEDPKDVRGALREAFA----H-PGPALVDVVTDP 531 (578)
T ss_pred HHHCCCeeEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 88887778889888887766666653 3 499999998764
No 222
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.76 E-value=3.6 Score=44.45 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=74.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CC---C-CCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GR---G-DFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~---~-~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +|+.++++--| |+.-.+..|..|...++|+++|.-+-..... +. + .++..|-..
T Consensus 413 ~lpaAiGa~la~p~r~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~ 491 (574)
T PRK09124 413 AMPQALGAQAAHPGRQVVALSGDG-GFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAA 491 (574)
T ss_pred hHHHHHHHHHhCCCCeEEEEecCc-HHhccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHH
Confidence 455677777665 56777777655 5666678899999999999998876542210 11 0 123457777
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.+.....++++++++.+.+++|+. ..||+.|++..|-
T Consensus 492 lA~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIev~i~~ 531 (574)
T PRK09124 492 IAEACGITGIRVEKASELDGALQRAFA-----HDGPALVDVVTAK 531 (574)
T ss_pred HHHHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEecC
Confidence 888888888899998888777776653 3489999998874
No 223
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=91.70 E-value=0.79 Score=44.93 Aligned_cols=109 Identities=14% Similarity=0.190 Sum_probs=68.3
Q ss_pred HHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCCcCHhhhhcccccee
Q 011590 67 ASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPFSKFA 138 (482)
Q Consensus 67 A~g~ar~t---gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~~k~~ 138 (482)
|.|.+.+. ++..++++..|=|..+. .-++..|...++|+|+|.-+-......... ....|...+.+.+.-..
T Consensus 113 a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~ 192 (293)
T cd02000 113 AAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPG 192 (293)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCE
Confidence 44554432 22335555557776654 357888999999999999765321111100 11235555666665555
Q ss_pred eecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 139 VKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 139 ~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
.+++ +++++.+.+.+|++.+..++ +|+.|++-.+-..
T Consensus 193 ~~Vdg~d~~~v~~a~~~A~~~ar~~~-~P~lIev~~~r~~ 231 (293)
T cd02000 193 IRVDGNDVLAVYEAAKEAVERARAGG-GPTLIEAVTYRLG 231 (293)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEEEeccC
Confidence 6665 34578888899998888765 8999999765443
No 224
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.69 E-value=3.8 Score=39.73 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCC--EEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590 16 GNTLAAKSLSLFGAT--HMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~--~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~ 92 (482)
.-.+|.+.|.+.|+. ..+-+.|........... +.......|-.+. -+|.|...+. +++.++++--|-...+.+
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~--~~~~~~~~mG~al-p~AiGaklA~pd~~VVai~GDG~~~~iG~ 95 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYI--NVNGFHTLHGRAI-PAATAVKATNPELTVIAEGGDGDMYAEGG 95 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHc--cCCCCCcccccHH-HHHHHHHHHCCCCcEEEEECchHHhhCcH
Confidence 345677788887764 344444433332222221 2223333355444 4467777765 567777776665444558
Q ss_pred HHHHHhhhCCCcEEEEeCCCCccc-----------CC-------CCCC-CCcCHhhhhcccc-ceeee--cCCcCcHHHH
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKD-----------FG-------RGDF-QELDQVEAVKPFS-KFAVK--AKDITEVPKC 150 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~-----------~~-------~~~~-q~~d~~~~~~~~~-k~~~~--~~~~~~~~~~ 150 (482)
..|..|...++||++|.-+-.... .+ .+.. ..+|...+.+.+. +|..+ +.+++++.+.
T Consensus 96 ~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~ 175 (280)
T PRK11869 96 NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEI 175 (280)
T ss_pred HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHH
Confidence 999999999999999975432110 00 0111 1246666666643 34443 4455665555
Q ss_pred HHHHHHHhhcCCCceEEEEcCc
Q 011590 151 VAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 151 l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+.+|+ .. +||++|++-.
T Consensus 176 i~~Al----~~-~Gp~lIeV~~ 192 (280)
T PRK11869 176 LKEAI----KH-KGLAIVDIFQ 192 (280)
T ss_pred HHHHH----hC-CCCEEEEEEC
Confidence 55554 54 4899888754
No 225
>PRK06154 hypothetical protein; Provisional
Probab=91.67 E-value=0.67 Score=49.94 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC------CCCC----CCcCHhhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG------RGDF----QELDQVEA 130 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~------~~~~----q~~d~~~~ 130 (482)
+.-+|.|.+.+. +|+.+|++--| |+.=....|.+|...++|+++|.-.-.... .. ...+ ...|-..+
T Consensus 436 glpaaiGa~la~p~r~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~l 514 (565)
T PRK06154 436 GLGLAMGAKLARPDALVINLWGDA-AFGMTGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAI 514 (565)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcch-HHhccHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHH
Confidence 444566666665 57888877555 344445789999999999999987654221 00 0000 12466778
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.....++++++++.+.+++|+..... .+|+.|++..|-
T Consensus 515 A~a~G~~g~~V~~~~el~~al~~a~~~~~~--~~p~lIev~v~~ 556 (565)
T PRK06154 515 ARALGGYGERVEDPEMLVPALLRALRKVKE--GTPALLEVITSE 556 (565)
T ss_pred HHHCCCeEEEECCHHHHHHHHHHHHhhccC--CCeEEEEEEeCh
Confidence 888888889999999988888887764322 379999998653
No 226
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=91.67 E-value=0.44 Score=47.48 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=27.9
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCc
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK 313 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~ 313 (482)
....+++||++|+||+++..+.....+.....++++|.||.++
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~ 241 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLER 241 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECccc
Confidence 3456788999999999987543222111113457788787765
No 227
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.62 E-value=0.89 Score=49.11 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=75.3
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--C-CCC-CcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DFQ-ELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~-~~q-~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| |+.-.+..|..|...++|+++|.-+-.... .++ + .++ ..|.
T Consensus 428 glpaAiGa~la~p~r~Vv~i~GDG-~f~m~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 506 (574)
T PRK06466 428 GLPAAMGVKLAFPDQDVACVTGEG-SIQMNIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDF 506 (574)
T ss_pred hHHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCH
Confidence 344577777765 67888877665 344446899999999999999988664321 011 0 112 2577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+..+..++++++++.+.+++|++. +.||+.|++..|-
T Consensus 507 ~~lA~a~G~~~~~v~~~~el~~al~~a~~~----~~~p~lIev~i~~ 549 (574)
T PRK06466 507 VKLAEAYGHVGIRITDLKDLKPKLEEAFAM----KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEeCC
Confidence 778888888899999988887777777742 3589999988764
No 228
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.58 E-value=1.3 Score=41.97 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEeCCCCccc-CC-C-------C----------CCCCcCHhhhhccc
Q 011590 75 GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKD-FG-R-------G----------DFQELDQVEAVKPF 134 (482)
Q Consensus 75 gk~~v~~~t~GpG~~-N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~-~-------~----------~~q~~d~~~~~~~~ 134 (482)
+|+.+|++--| |+. -.+..+.++...++|+++|.-+-.... .+ . + .+...|...+.+.+
T Consensus 87 ~~~Vv~i~GDG-~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~ 165 (237)
T cd02018 87 KKDVVVIGGDG-ATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH 165 (237)
T ss_pred CCcEEEEeCch-HHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC
Confidence 45666665444 222 246677777789999999987554221 10 0 0 11234666677776
Q ss_pred cceeee---cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 135 SKFAVK---AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 135 ~k~~~~---~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
.-...+ +.+++++ ..|++.|....+||++|++..|...
T Consensus 166 G~~~~~~~~v~~~~~l----~~al~~al~~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 166 GCVYVARLSPALKKHF----LKVVKEAISRTDGPTFIHAYTPCIT 206 (237)
T ss_pred CCCEEEEEccCCHHHH----HHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 444443 6665555 4555555441248999999887543
No 229
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=91.53 E-value=1.7 Score=41.75 Aligned_cols=160 Identities=13% Similarity=0.136 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHhcC---CCEEEecCCcChHHHHHHHHh-CCCcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 15 DGNTLAAKSLSLFG---ATHMFGVVGIPVTSLANRAVQ-LGVRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 15 ~~~~~l~~~L~~~G---v~~vFgvpG~~~~~l~~al~~-~~i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
+..+.+.+.|.++| -+-|.-.-......=...+.+ -.=+++. ---||+.+.+|.|.+....+|-++ |.++=++
T Consensus 8 ~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~--tfa~F~s 85 (312)
T COG3958 8 SLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVS--TFAAFLS 85 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceee--chHHHHH
Confidence 44555566655554 454544433211111111222 2234443 357999999999999987776554 3333222
Q ss_pred -hhHHHHHHhh-hCCCcEEEEeCCCCcccCC-CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590 90 -HGLAGLSNGM-INTWPIVMISGSCDQKDFG-RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC 166 (482)
Q Consensus 90 -N~~~ai~~A~-~~~~Pvl~i~g~~~~~~~~-~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv 166 (482)
-+.-=|.++- .++.||=++........-. -+.||.++-..++|.+.+....... +.+ ..+.++..+...+ ||+
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~-D~v--~~~~i~~~~~~~~-GP~ 161 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPA-DAV--ETRAILDQIADYK-GPV 161 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccC-cHH--HHHHHHHHHHhcC-CCE
Confidence 2222333322 3667777776665544332 3458999889999999888776642 222 4566666666665 999
Q ss_pred EEEcCcchhccccC
Q 011590 167 YLDLPTDVLHQTIS 180 (482)
Q Consensus 167 ~l~iP~dv~~~~~~ 180 (482)
|+.+..+-....++
T Consensus 162 Y~Rl~R~~~p~~~~ 175 (312)
T COG3958 162 YMRLGRGKVPVVVD 175 (312)
T ss_pred EEEecCCCCCceec
Confidence 99999854333333
No 230
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.50 E-value=1.1 Score=48.41 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=71.8
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-------CCC-----CCCCcCHhhh
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-------GRG-----DFQELDQVEA 130 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-------~~~-----~~q~~d~~~~ 130 (482)
.-+|.|.+.+. +|+.++++--| |+.-....|.++...++|+++|.-.-..... ..+ .+...|-..+
T Consensus 414 lpaAiGa~la~p~r~Vv~i~GDG-sf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~i 492 (575)
T TIGR02720 414 VPGAIAAKLNYPDRQVFNLAGDG-AFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKI 492 (575)
T ss_pred HHHHHHHHHhCCCCcEEEEEccc-HHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHH
Confidence 34455655554 46777777655 3444467899999999999999765432210 001 1334577778
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.-...++++.+++.+.+++|++ . .. .+|+.|++..|-
T Consensus 493 A~a~G~~~~~v~~~~el~~al~~a~~-~-~~-~~p~liev~i~~ 533 (575)
T TIGR02720 493 AEGVGAVGFRVNKIEQLPAVFEQAKA-I-KQ-GKPVLIDAKITG 533 (575)
T ss_pred HHHCCCEEEEeCCHHHHHHHHHHHHh-h-CC-CCcEEEEEEeCC
Confidence 88887777889888888777777765 2 33 489999998865
No 231
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=91.42 E-value=0.95 Score=48.86 Aligned_cols=106 Identities=12% Similarity=0.025 Sum_probs=73.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC-C---CC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR-G---DF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~-~---~~-q~~d~ 127 (482)
+.-+|.|.+.++ +|+.++++--|. +.-.+..|..|...++|+++|.-+-.... .+. . .+ ...|.
T Consensus 429 glpaAiGaala~p~~~vv~i~GDGs-f~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 507 (571)
T PRK07710 429 GLPAAIGAQLAKPDETVVAIVGDGG-FQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDF 507 (571)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchH-HhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCH
Confidence 555677888765 678888876653 44445679999999999999987654311 010 0 11 23577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-...++++.+++.+.+++|+ .. .||+.|++..|-
T Consensus 508 ~~~A~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lieV~vd~ 549 (571)
T PRK07710 508 VKLAEAYGIKGVRIDDELEAKEQLQHAI----EL-QEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEEecC
Confidence 7788888778889988877766666655 33 489999999874
No 232
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.42 E-value=0.73 Score=49.95 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=76.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc------CC---C---C-CC------
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD------FG---R---G-DF------ 122 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~------~~---~---~-~~------ 122 (482)
+.-+|.|.+.+. +|+.+|++--| |+.-....|..|...++|+++|.-+-.... .+ . . .+
T Consensus 424 glpaAiGa~la~p~r~Vv~i~GDG-~f~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 502 (591)
T PRK11269 424 TIPAALGVRAADPDRNVVALSGDY-DFQFLIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSP 502 (591)
T ss_pred hhhhHHhhhhhCCCCcEEEEEccc-hhhcCHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccccc
Confidence 455677777765 57777776555 455566889999999999999987654210 00 0 0 01
Q ss_pred ----CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 123 ----QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 123 ----q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
...|-..+.+.+.-+..++++++++.+.+++|++..... .||+.|+|..|
T Consensus 503 ~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~~~~~~~-~gp~lieV~v~ 556 (591)
T PRK11269 503 ELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAKALMAEF-RVPVVVEVILE 556 (591)
T ss_pred cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhcccC-CCcEEEEEEec
Confidence 125777788888888999999999888888887654333 48999999876
No 233
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=91.41 E-value=1.2 Score=44.59 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=61.9
Q ss_pred EEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcCHhhhhccccceeeecCCcC--cHHHH
Q 011590 78 GILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQVEAVKPFSKFAVKAKDIT--EVPKC 150 (482)
Q Consensus 78 ~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d~~~~~~~~~k~~~~~~~~~--~~~~~ 150 (482)
.++++..|=|..+. .-++..|-..++|+|+|.-+-...... . ......|.....+.+.-...+++..+ ++.+.
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a 237 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREV 237 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHH
Confidence 35556667777762 235777888999999999765421100 0 01112355666676666667776555 55777
Q ss_pred HHHHHHHhhcCCCceEEEEcCc
Q 011590 151 VAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 151 l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+.+|++.|..++ ||+.|++-.
T Consensus 238 ~~~A~~~ar~~~-gP~lIev~t 258 (341)
T CHL00149 238 AKEAVERARQGD-GPTLIEALT 258 (341)
T ss_pred HHHHHHHHHhCC-CCEEEEEEE
Confidence 889999998865 899999864
No 234
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.30 E-value=4.6 Score=43.60 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=75.4
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--C-CC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-DF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~-~~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| |+.=...-|.+|...++|+++|.-+-.... .+. . .+ ...|-
T Consensus 426 glpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (574)
T PRK07979 426 GLPAALGVKMALPEETVVCVTGDG-SIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDF 504 (574)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCH
Confidence 445677777765 56777776555 344445789999999999999987654211 011 1 11 12577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+..+..++++++++.+.+++|++.... .+|+.|+|..|-
T Consensus 505 ~~iA~a~G~~g~~v~~~~eL~~al~~a~~~~~~--~~p~lIeV~i~~ 549 (574)
T PRK07979 505 VRLAEAYGHVGIQISHPDELESKLSEALEQVRN--NRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHHhccCC--CCcEEEEEEECC
Confidence 788888888889999999988888888764322 489999999873
No 235
>PRK08322 acetolactate synthase; Reviewed
Probab=91.26 E-value=1.1 Score=48.19 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=71.4
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC---CCCCCcCHhhh
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR---GDFQELDQVEA 130 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~---~~~q~~d~~~~ 130 (482)
.-+|.|.+.+. +|+.++++--|. +.=.+..|.+|...++|+++|.-.-..... +. ..++..|...+
T Consensus 412 lpaaiGa~la~p~~~vv~i~GDGs-f~m~~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~l 490 (547)
T PRK08322 412 LPSAIAAKLVHPDRKVLAVCGDGG-FMMNSQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKY 490 (547)
T ss_pred hHHHHHHHHhCCCCcEEEEEcchh-HhccHHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHH
Confidence 34567777664 677777776553 444457788899999999999875543210 11 11234577778
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.+.-+..++++++++.+.+++|+. . .||+.|++..|
T Consensus 491 A~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIev~v~ 528 (547)
T PRK08322 491 AESYGAKGYRVESADDLLPTLEEALA----Q-PGVHVIDCPVD 528 (547)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEec
Confidence 88887788899988887777766653 3 48999999876
No 236
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=91.25 E-value=1.1 Score=48.09 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C-CC---CC-CCcCHh
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-RG---DF-QELDQV 128 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~-~~---~~-q~~d~~ 128 (482)
.-+|.|.+.+. +|+.++++--| |+.-.++.|.+|...++|+++|.-.-..... + +. .+ ...|..
T Consensus 407 lpaAiGa~la~p~~~vv~i~GDG-~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 485 (548)
T PRK08978 407 LPAAIGAQVARPDDTVICVSGDG-SFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFV 485 (548)
T ss_pred HHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHH
Confidence 55677777765 67888887665 4666678999999999999999876542210 0 10 11 235777
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.+.-+..++++++++.+.+++|+. . .+|..|+|..|-
T Consensus 486 ~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~id~ 526 (548)
T PRK08978 486 MLASAFGIPGQTITRKDQVEAALDTLLN----S-EGPYLLHVSIDE 526 (548)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEecC
Confidence 7888888888999998888777777764 2 389999999874
No 237
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.23 E-value=1.3 Score=47.90 Aligned_cols=105 Identities=22% Similarity=0.294 Sum_probs=70.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCCCCcCHh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDFQELDQV 128 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~q~~d~~ 128 (482)
+.-+|.|.+.+. +|+.+|++--| ++.-.+..+..|...++|+++|.-+-.... .+. ..+...|..
T Consensus 442 ~l~~aiGa~la~~~~~vv~i~GDG-sf~~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~ 520 (578)
T PRK06112 442 GVPMAIGAKVARPGAPVICLVGDG-GFAHVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHA 520 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEEcch-HHHhHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHH
Confidence 455677877765 56777777655 344456788889999999999987664210 000 011235666
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.+.+.-...++++++++.+.+++|+ .. .||+.|++..|
T Consensus 521 ~~A~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~lIev~~~ 560 (578)
T PRK06112 521 AIARACGCDGVRVEDPAELAQALAAAM----AA-PGPTLIEVITD 560 (578)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEcC
Confidence 777777667778888777666665554 33 48999999876
No 238
>PRK07064 hypothetical protein; Provisional
Probab=91.06 E-value=0.89 Score=48.75 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=70.2
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C-C---CCCCCcCHhhh
Q 011590 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-R---GDFQELDQVEA 130 (482)
Q Consensus 65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~-~---~~~q~~d~~~~ 130 (482)
-+|.|.+.+. +|+.++++--| |+.-.+..|.+|...++|+++|.-.-..... + . ..+...|-..+
T Consensus 412 paAiGa~lA~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~l 490 (544)
T PRK07064 412 AMAIGAALAGPGRKTVGLVGDG-GLMLNLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALL 490 (544)
T ss_pred chhhhhhhhCcCCcEEEEEcch-HhhhhHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHH
Confidence 3455655554 56777777655 4555568999999999999999765432210 1 0 11234577778
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.+.-...++++++++.+.+++|+ . ..||+.|++..|
T Consensus 491 A~a~G~~~~~v~~~~eL~~al~~a~----~-~~~p~lIeV~~~ 528 (544)
T PRK07064 491 AASLGLPHWRVTSADDFEAVLREAL----A-KEGPVLVEVDML 528 (544)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHH----c-CCCCEEEEEEcc
Confidence 8888777789999888777777666 3 348999999986
No 239
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=91.05 E-value=10 Score=38.37 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHhcCCC-EEEecCCcChHHHHHHHHhC-----CCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590 14 IDGNTLAAKSLSLFGAT-HMFGVVGIPVTSLANRAVQL-----GVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGP 86 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~-~vFgvpG~~~~~l~~al~~~-----~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~Gp 86 (482)
++-.++|-..++...=+ .|+.-.|.....++. +.+. .-.++..-.=..+.-+|.|.+.+. +|+.+|++--|
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~-~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p~r~Vv~i~GDG- 249 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYE-LRDRIGQGHARDFLTVGSMGHASQIALGLALARPDQRVVCLDGDG- 249 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH-hhcccccCCCCceEeechhhhHHHHHHHHHHHCCCCCEEEEEChH-
Confidence 78888888888888764 444445544444433 2222 234443322223445677777653 46677766443
Q ss_pred hhHhhHHHHHHhhhCCC-cEEEEeCCCCccc-CCC-CC-CCCcCHhhhhcccc-ceeeecCCcCcHHHHHHHHHHHhhcC
Q 011590 87 GCVHGLAGLSNGMINTW-PIVMISGSCDQKD-FGR-GD-FQELDQVEAVKPFS-KFAVKAKDITEVPKCVAQVLERAVSG 161 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~-Pvl~i~g~~~~~~-~~~-~~-~q~~d~~~~~~~~~-k~~~~~~~~~~~~~~l~~A~~~a~~~ 161 (482)
++.-.+..+..+...+. |+++|.-+-.... .+. .. ....|...+++.+. .+..++.+++++.+.+++|. ..
T Consensus 250 sflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a~----~~ 325 (361)
T TIGR03297 250 AALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVSTLEELETALTAAS----SA 325 (361)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHHH----hC
Confidence 22223467777766664 7888876654321 111 00 12356667777765 35678887777766665554 33
Q ss_pred CCceEEEEcCcch
Q 011590 162 RPGGCYLDLPTDV 174 (482)
Q Consensus 162 ~~gPv~l~iP~dv 174 (482)
+||++|++..+.
T Consensus 326 -~gp~lIeV~v~~ 337 (361)
T TIGR03297 326 -NGPRLIEVKVRP 337 (361)
T ss_pred -CCcEEEEEEecC
Confidence 489999998765
No 240
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=90.94 E-value=0.86 Score=44.82 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=65.8
Q ss_pred HHHHh---HhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CCCcCHhhhhccc--cce
Q 011590 68 SAYGY---LTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQELDQVEAVKPF--SKF 137 (482)
Q Consensus 68 ~g~ar---~tgk~~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~--~k~ 137 (482)
.|.++ ..++..|+++..|=|++| ..-++--|...+.|||+++-+-.....-... .-.-+.....+.+ ...
T Consensus 111 ~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~ 190 (300)
T PF00676_consen 111 AGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGI 190 (300)
T ss_dssp HHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEE
T ss_pred cchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccCCcEE
Confidence 36665 457788888888877755 3457888999999999999754221100000 0001122223333 334
Q ss_pred eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 138 ~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
...-.++..+.+.+..|++.+..++ ||+.|++=.
T Consensus 191 ~VDG~D~~av~~a~~~A~~~~R~g~-gP~lie~~t 224 (300)
T PF00676_consen 191 RVDGNDVEAVYEAAKEAVEYARAGK-GPVLIEAVT 224 (300)
T ss_dssp EEETTSHHHHHHHHHHHHHHHHTTT---EEEEEEE
T ss_pred EECCEeHHHHHHHHHHHHHHHhcCC-CCEEEEEee
Confidence 4444678899999999999999987 999999864
No 241
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.92 E-value=2.1 Score=38.93 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCC------------------CCC--CCC
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK------------------GLL--PDT 262 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~------------------g~~--~~~ 262 (482)
+..++++.++..|.-||+|||=+-+.+. .-..+++.+||+.+|+.+-...+-+ .++ +.+
T Consensus 54 ~A~eA~raAaA~LlLAk~PVISVNGN~A-AL~p~e~v~La~~~~aklEVNLF~RteeRv~~I~e~L~~~Ga~~vLg~~~~ 132 (256)
T COG1701 54 PALEAIRAAAAALLLAKHPVISVNGNVA-ALVPEEVVELAEATGAKLEVNLFYRTEERVRKIAEVLKEHGAKEVLGTDPD 132 (256)
T ss_pred hHHHHHHHHHHHHHhccCCeEEEcCcee-eeCcHHHHHHHHHhCCceEEEeeccCHHHHHHHHHHHHhcCcceeecCCcc
Confidence 3456788888899999999999987765 4667899999999999876554321 111 001
Q ss_pred CCcccch------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHH
Q 011590 263 HPLAATA------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMI 336 (482)
Q Consensus 263 hp~~~G~------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L 336 (482)
+...-|. ...+-+-.||+||+= +.+-+..- ..-.-+.++|.||.+|..-.....++.|+-++--+++.|
T Consensus 133 ~~~ip~l~s~R~~v~~~GIy~ADVVLvp---LEDGDRte--aLv~mGK~ViaIDLNPLSRTar~AsItIVDnivRA~p~l 207 (256)
T COG1701 133 AARIPGLESERGKVSEEGIYSADVVLVP---LEDGDRTE--ALVRMGKTVIAIDLNPLSRTARKASITIVDNIVRAVPNL 207 (256)
T ss_pred cccCCCccccccccCcccceeccEEEEe---cCCCcHHH--HHHHhCCeEEEEeCCccccccccCceeeeHHHHHHHHHH
Confidence 1111110 011234468888764 22100000 001236789999999987766777999999988888888
Q ss_pred HHhhhc
Q 011590 337 NKEIKD 342 (482)
Q Consensus 337 ~~~l~~ 342 (482)
.+..++
T Consensus 208 i~~~~e 213 (256)
T COG1701 208 IEFVKE 213 (256)
T ss_pred HHHHHH
Confidence 776653
No 242
>PLN02573 pyruvate decarboxylase
Probab=90.90 E-value=1.2 Score=48.19 Aligned_cols=106 Identities=10% Similarity=0.051 Sum_probs=70.4
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C------CCCCCCcCHhhhhcccc
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G------RGDFQELDQVEAVKPFS 135 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~------~~~~q~~d~~~~~~~~~ 135 (482)
.-+|.|.+.+. +|+.++++--| |+.=.+.-|.+|...++|+++|.-.-..... . ....+..|...+.+.+.
T Consensus 434 lpaaiGa~lA~p~r~vv~i~GDG-~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G 512 (578)
T PLN02573 434 VGATLGYAQAAPDKRVIACIGDG-SFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIH 512 (578)
T ss_pred hhHHHHHHHhCCCCceEEEEecc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhc
Confidence 34566666665 57777777555 3444457899999999999999876543211 0 01123356666777663
Q ss_pred -----ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 136 -----KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 136 -----k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+..++++++++.+.+++|+.. .+.||+.|++..|
T Consensus 513 ~~~g~~~~~~V~~~~eL~~al~~a~~~---~~~~p~lieV~v~ 552 (578)
T PLN02573 513 NGEGKCWTAKVRTEEELIEAIATATGE---KKDCLCFIEVIVH 552 (578)
T ss_pred CcCCceeEEEecCHHHHHHHHHHHHhh---CCCCcEEEEEEcC
Confidence 5678898888887777776642 2358999999987
No 243
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=90.81 E-value=1.2 Score=48.03 Aligned_cols=106 Identities=9% Similarity=0.177 Sum_probs=72.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CCC----CC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~~----~~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--|. +.-.+..|.+|...++|+++|.-+-..... +.. .+ ...|.
T Consensus 424 ~lpaaiGa~la~~~~~vv~i~GDGs-f~~~~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~ 502 (564)
T PRK08155 424 GLPAAIGAALANPERKVLCFSGDGS-LMMNIQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINF 502 (564)
T ss_pred hhHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCH
Confidence 455677777765 577777776664 334467888999999999998876542210 000 11 23577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-+..++++++++.+.+++|+. . .+|+.|++..|-
T Consensus 503 ~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~~~~ 544 (564)
T PRK08155 503 MQIAAGFGLETCDLNNEADPQAALQEAIN----R-PGPALIHVRIDA 544 (564)
T ss_pred HHHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 77888887777888888887666666653 3 489999999874
No 244
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.80 E-value=1.1 Score=48.26 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=72.6
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC---CCC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR---GDF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~---~~~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--|. +.-.+..|..|...++|+++|.-+-.... .+. ..+ ...|.
T Consensus 426 ~lp~aiGa~la~p~~~vv~i~GDG~-f~~~~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (574)
T PRK06882 426 GLPAAIGVKFAHPEATVVCVTGDGS-IQMNIQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDF 504 (574)
T ss_pred hhHHHHHHHhhcCCCcEEEEEcchh-hhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCH
Confidence 445677777665 467777766553 44445889999999999999987665221 011 011 12466
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-...++++.+++.+.+++|+.. +.+|+.|++..|-
T Consensus 505 ~~la~a~G~~~~~v~~~~eL~~al~~a~~~----~~~p~liev~i~~ 547 (574)
T PRK06882 505 AKLAEAYGHVGIQIDTPDELEEKLTQAFSI----KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHHHCCCeEEEeCCHHHHHHHHHHHHhc----CCCcEEEEEEecC
Confidence 677788777788999888887777766642 3489999999874
No 245
>PRK08266 hypothetical protein; Provisional
Probab=90.78 E-value=1.4 Score=47.29 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=72.5
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------C-CC---CCCCCcCHhhh
Q 011590 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------F-GR---GDFQELDQVEA 130 (482)
Q Consensus 65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~-~~---~~~q~~d~~~~ 130 (482)
-+|.|.+... +|+.+|++--| |+.-....|..|...++|+++|.-+-.... . ++ ..+...|...+
T Consensus 409 p~aiGa~la~p~~~vv~v~GDG-~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~l 487 (542)
T PRK08266 409 PTALGAKVANPDRPVVSITGDG-GFMFGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKL 487 (542)
T ss_pred HHHHHHHHhCCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHH
Confidence 4577777665 67888887766 555567899999999999999876553211 0 11 11234577788
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.-...++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 488 a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~i~~ 526 (542)
T PRK08266 488 AESFGVAAFRVDSPEELRAALEAAL----AH-GGPVLIEVPVPR 526 (542)
T ss_pred HHHcCCeEEEeCCHHHHHHHHHHHH----hC-CCcEEEEEEecC
Confidence 8888888888988877766665554 33 389999998764
No 246
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.77 E-value=0.69 Score=49.90 Aligned_cols=106 Identities=12% Similarity=0.080 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC----CCCCCcCHh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQELDQV 128 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~q~~d~~ 128 (482)
+.-+|.|.+.+. +|+.++++--|. +.=...-|.+|...++|++++.-+-..... +. -.+...|..
T Consensus 427 ~lp~aiGa~lA~p~~~vv~i~GDG~-f~~~~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~ 505 (570)
T PRK06725 427 GFPAAIGAQLAKEEELVICIAGDAS-FQMNIQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFV 505 (570)
T ss_pred hhhHHHhhHhhcCCCeEEEEEecch-hhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHH
Confidence 444566666654 578887776664 333347888999999999999876542210 00 012345777
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.+..+..++++++++.+.+++|+. . .||+.|+++.|-
T Consensus 506 ~~a~a~G~~~~~v~~~~~l~~al~~a~~----~-~~p~liev~id~ 546 (570)
T PRK06725 506 KVAEAYGVKGLRATNSTEAKQVMLEAFA----H-EGPVVVDFCVEE 546 (570)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 8888888888899888887666666653 3 489999999874
No 247
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.76 E-value=1.1 Score=48.15 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=73.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------C-C--C-CCC-CcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------G-R--G-DFQ-ELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~-~--~-~~q-~~d~ 127 (482)
+.-+|.|.+.+. .|+.+|++--|. +.=.+..|..|...++|++++.-+-..... + . . .+. ..|.
T Consensus 419 ~l~~aiGa~la~p~~~vv~i~GDG~-f~m~~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 497 (563)
T PRK08527 419 GLPAALGAKLAVPDKVVINFTGDGS-ILMNIQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDF 497 (563)
T ss_pred hHHHHHHHHHhCCCCcEEEEecCch-hcccHHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCH
Confidence 445677877776 577777775553 333346788899999999988876542210 0 0 0 121 3577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-+.+++++++++.+.+++|+. . .||+.|++..|-
T Consensus 498 ~~~a~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lieV~v~~ 539 (563)
T PRK08527 498 VKLAESFGGIGFRVTTKEEFDKALKEALE----S-DKVALIDVKIDR 539 (563)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEECC
Confidence 77888887788899998888777777653 2 489999999874
No 248
>PLN02470 acetolactate synthase
Probab=90.76 E-value=1.3 Score=48.09 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=74.3
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CC---CC-CC-----
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GR---GD-FQ----- 123 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~---~~-~q----- 123 (482)
+.-+|.|.+.+. +|+.++++--| |+.=....|.+|...++|+++|.-.-.... + +. +. +.
T Consensus 431 glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~ 509 (585)
T PLN02470 431 GLPAAIGAAAANPDAIVVDIDGDG-SFIMNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAE 509 (585)
T ss_pred hHHHHHHHHHhCCCCcEEEEEccc-hhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccccc
Confidence 556678888776 67888777655 344445899999999999999887654310 0 00 00 00
Q ss_pred ---CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 124 ---ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 124 ---~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..|...+.+.+.-...++++++++.+.+++|+. . .+|+.|+|..|-
T Consensus 510 ~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lieV~i~~ 558 (585)
T PLN02470 510 AEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKMLD----T-PGPYLLDVIVPH 558 (585)
T ss_pred cCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 147777888887778899998888777777764 2 489999999874
No 249
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=90.71 E-value=2.2 Score=40.31 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=57.6
Q ss_pred CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--CCCC----------------------CCCcCHhhh
Q 011590 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--GRGD----------------------FQELDQVEA 130 (482)
Q Consensus 75 gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--~~~~----------------------~q~~d~~~~ 130 (482)
.|+.++++--|--..-.+..|..|...++|+++|.-+-..... +... ....|...+
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~i 159 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLI 159 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHH
Confidence 5677777655532234468899999999999999876543220 0000 011455556
Q ss_pred hcccc-cee--eecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFS-KFA--VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~-k~~--~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+- ++. .++.+++++.+.+++|++ . +||+.|++..+=
T Consensus 160 A~a~G~~~~~~~~v~~~~el~~al~~a~~----~-~gP~lIev~~~C 201 (235)
T cd03376 160 MAAHNIPYVATASVAYPEDLYKKVKKALS----I-EGPAYIHILSPC 201 (235)
T ss_pred HHHcCCcEEEEEcCCCHHHHHHHHHHHHh----C-CCCEEEEEECCC
Confidence 66653 332 357777776666666553 3 489999887663
No 250
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=90.67 E-value=4.1 Score=44.07 Aligned_cols=157 Identities=7% Similarity=0.017 Sum_probs=93.2
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCc-ChHHHHHHHHh-CCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChh
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGI-PVTSLANRAVQ-LGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPG 87 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~-~~~~l~~al~~-~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG 87 (482)
++..+++-+.-+...=+.++..=++ ........+.- ...+++.... =..+.-+|.|.+.+. +|+.+|++--|.
T Consensus 381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~- 459 (579)
T TIGR03457 381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGA- 459 (579)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchH-
Confidence 4444443333333443455544333 32333333332 3345553211 111334677777765 577777775553
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---C-CCCC-cCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---G-DFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQ 153 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~-~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~ 153 (482)
+.=....|.+|...++|+++|.-+-.... .+. + .++. .|...+.+.+.-+..++++++++.+.+++
T Consensus 460 f~m~~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~ 539 (579)
T TIGR03457 460 WGMSMNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKK 539 (579)
T ss_pred HhccHHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHH
Confidence 44445899999999999999887554321 010 0 1223 47778888888888899999998888888
Q ss_pred HHHHhhcCCCceEEEEcCcc
Q 011590 154 VLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 154 A~~~a~~~~~gPv~l~iP~d 173 (482)
|++... ..+|+.|++..|
T Consensus 540 a~~~~~--~~~p~lieV~v~ 557 (579)
T TIGR03457 540 AIAAQA--EGKTTVIEIVCT 557 (579)
T ss_pred HHhhCC--CCCcEEEEEEeC
Confidence 875432 237899999887
No 251
>PRK07524 hypothetical protein; Provisional
Probab=90.54 E-value=1.4 Score=47.15 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=72.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C-------C-C---CCCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------G-R---GDFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~-------~-~---~~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +|+.++++--|.-..| +..|..|...++|++++.-+-.... . + . ..+...|...
T Consensus 412 ~lp~aiGa~lA~p~~~vv~i~GDG~f~~~-~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~ 490 (535)
T PRK07524 412 GLPAAIGAALGAPERPVVCLVGDGGLQFT-LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIA 490 (535)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchHHhhh-HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHH
Confidence 344577777764 6788888766643333 4668899999999998887653221 0 1 0 0123457778
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
+.+.+.-+..++++++++.+.+++|+ .. .||+.|++..|-+.
T Consensus 491 ~A~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~~~~ 532 (535)
T PRK07524 491 LARAFGCAAERVADLEQLQAALRAAF----AR-PGPTLIEVDQACWF 532 (535)
T ss_pred HHHHCCCcEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEECCccc
Confidence 88888777888888777666665555 43 48999999877543
No 252
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=90.51 E-value=2 Score=41.87 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=63.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc-----------cCCC-------CCC-
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK-----------DFGR-------GDF- 122 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~-----------~~~~-------~~~- 122 (482)
+.-+|.|...+. .++.++++--|-++.-.++.+..|...++|+++|.-+-... ..+. +..
T Consensus 74 alpaAiGaklA~Pd~~VV~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~ 153 (286)
T PRK11867 74 ALAIATGLKLANPDLTVIVVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIE 153 (286)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCC
Confidence 344567777765 56777777666556667788999999999999987643211 0110 000
Q ss_pred CCcCHhhhhccccc-eee--ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 123 QELDQVEAVKPFSK-FAV--KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 123 q~~d~~~~~~~~~k-~~~--~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..+|...+...+.- +.. .+.+++++. ++++.|+.. +||++|++-.+
T Consensus 154 ~~~d~~~lA~a~Ga~~va~~~~~~~~el~----~al~~Al~~-~Gp~lIev~~~ 202 (286)
T PRK11867 154 PPFNPVELALGAGATFVARGFDSDVKQLT----ELIKAAINH-KGFSFVEILQP 202 (286)
T ss_pred CCCCHHHHHHHCCCcEEEEecCCCHHHHH----HHHHHHHhC-CCCEEEEEeCC
Confidence 12455655555432 222 234455554 455555454 49999998766
No 253
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.48 E-value=1.4 Score=47.66 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=71.9
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-C--C-CC--CCcCH
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-R--G-DF--QELDQ 127 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~--~-~~--q~~d~ 127 (482)
.-+|.|.+.+. +|+.++++--| |+.=....|..|...++|++++.-.-.... .+ + + .+ ...|.
T Consensus 436 lpaaiGaala~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~ 514 (585)
T CHL00099 436 LPAAIGAQIAHPNELVICISGDA-SFQMNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDF 514 (585)
T ss_pred HHHHHHHHHhCCCCeEEEEEcch-hhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCH
Confidence 34567777765 67777777555 344445788999999999999987654211 00 0 0 01 23577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-+..++++++++.+.+++|+. . .||+.|++..|-
T Consensus 515 ~~la~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~v~~ 556 (585)
T CHL00099 515 VKLAEAYGIKGLRIKSRKDLKSSLKEALD----Y-DGPVLIDCQVIE 556 (585)
T ss_pred HHHHHHCCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEECC
Confidence 77888888888899988887777766664 3 389999999873
No 254
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=90.46 E-value=1.3 Score=47.58 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=69.7
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C---------CC---CCCCCcCHhhhh
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F---------GR---GDFQELDQVEAV 131 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~---------~~---~~~q~~d~~~~~ 131 (482)
+|.|.+... +|+.+|++--| ++.-....|..|...++|+++|.-+-.... . +. -.+...|...+.
T Consensus 423 aaiGa~la~p~~~vv~i~GDG-sf~~~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a 501 (557)
T PRK08199 423 AAIAAKLLFPERTVVAFAGDG-CFLMNGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALA 501 (557)
T ss_pred HHHHHHHhCCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHH
Confidence 466666654 57777777555 344455888899999999999987664221 0 00 012235677788
Q ss_pred ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.-+..++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 502 ~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~li~v~~~~ 539 (557)
T PRK08199 502 RAYGGHGETVERTEDFAPAFERAL----AS-GKPALIEIRIDP 539 (557)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEeCH
Confidence 888777888988887766666665 33 489999998864
No 255
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=90.38 E-value=1.3 Score=45.72 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=60.7
Q ss_pred cEEEEEcCChhhHhhH---HHHHHhhhCCCcEEEEeCCCCcccCCCC-CCC--CcCHhhhhccccceeeecCCc--CcHH
Q 011590 77 PGILLTVSGPGCVHGL---AGLSNGMINTWPIVMISGSCDQKDFGRG-DFQ--ELDQVEAVKPFSKFAVKAKDI--TEVP 148 (482)
Q Consensus 77 ~~v~~~t~GpG~~N~~---~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~~~~~~~k~~~~~~~~--~~~~ 148 (482)
..++++..|=|.+|.- -++..|...++|+|++.-+.... ++.. ..| ..|.....+.+.-...+++.. .++.
T Consensus 223 ~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~ 301 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVR 301 (433)
T ss_pred CCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-ecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHH
Confidence 3456666677776633 37888999999999999654211 1110 011 224555556655555566543 4667
Q ss_pred HHHHHHHHHhhcCCCceEEEEcCc
Q 011590 149 KCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 149 ~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
+.+.+|++.|..++ ||+.|++-.
T Consensus 302 ~a~~~A~~~Ar~g~-gP~LIe~~t 324 (433)
T PLN02374 302 EVAKEAIERARRGE-GPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEEE
Confidence 78889999999875 999999754
No 256
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=90.32 E-value=0.87 Score=49.01 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=72.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--C-C-CCCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--G-D-FQELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~-~-~q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--|. +.-....|.+|...++|+++|.-+-.... .++ . . ....|.
T Consensus 417 ~l~aaiGa~la~~~~~vv~~~GDG~-f~~~~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~ 495 (558)
T TIGR00118 417 GLPAAIGAKVAKPESTVICITGDGS-FQMNLQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDF 495 (558)
T ss_pred hhhHHHhhhhhCCCCcEEEEEcchH-HhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCH
Confidence 445778887776 577777765553 44445689999999999999987664321 000 0 1 123677
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-+..++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 496 ~~~a~a~G~~~~~v~~~~~l~~al~~a~----~~-~~p~liev~~~~ 537 (558)
T TIGR00118 496 VKLAEAYGIKGIRIEKPEELDEKLKEAL----SS-NEPVLLDVVVDK 537 (558)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEEeCC
Confidence 7788888777788888777766666555 33 489999998874
No 257
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=90.30 E-value=1.1 Score=45.70 Aligned_cols=111 Identities=19% Similarity=0.170 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcc-cc--hHHHHhhhcCC
Q 011590 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-AT--AARSLAIGQCD 279 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~-~G--~~~~~~l~~aD 279 (482)
+++++.+++.|++.+ +..++.|.... .+....+.+|++.+|.+.+.....-........+. .+ .....=++++|
T Consensus 72 deAl~~ia~~l~~~~~~~i~~~~~~~~~-~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad 150 (386)
T cd02768 72 EEALKTVAEGLKAVKGDKIGGIAGPRAD-LESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEAD 150 (386)
T ss_pred HHHHHHHHHHHHhcChhheEEEecCCCC-HHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCC
Confidence 567888888888876 56666665432 23345688999999988653321111000000000 00 01123357999
Q ss_pred EEEEecCccCcccccC--CC-CCCC-CCCcEEEEeCCchhh
Q 011590 280 VALVVGARLNWLLHFG--EP-PKWS-KDVKFVLVDVCKEEI 316 (482)
Q Consensus 280 lvl~iG~~~~~~~~~g--~~-~~~~-~~~~ii~id~d~~~~ 316 (482)
+||++|+++.+..... +. .... .++++|.||+.....
T Consensus 151 ~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~ 191 (386)
T cd02768 151 AVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL 191 (386)
T ss_pred EEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc
Confidence 9999999875422111 11 1112 378999999866544
No 258
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=90.19 E-value=1.6 Score=46.70 Aligned_cols=104 Identities=12% Similarity=-0.001 Sum_probs=69.0
Q ss_pred HHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC--------CCCCCCcCHhhhhccccce
Q 011590 66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--------RGDFQELDQVEAVKPFSKF 137 (482)
Q Consensus 66 ~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--------~~~~q~~d~~~~~~~~~k~ 137 (482)
+|.|.+.+..++.++++--| |+.=.+.-|.+|...++|+++|.-.-.....- ...+...|-..+.+.+..+
T Consensus 411 aaiGa~lA~~~r~v~i~GDG-~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~ 489 (535)
T TIGR03394 411 AGIGAQCTSGKRILTLVGDG-AFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGGD 489 (535)
T ss_pred HHHHHHhCCCCCeEEEEeCh-HHHhHHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHcCCC
Confidence 45555556555566654333 34444589999999999999998765432110 1122335667788888888
Q ss_pred eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 138 ~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..++++++++.+.+++|++ .+.+|+.|++..|-
T Consensus 490 ~~~v~~~~eL~~al~~a~~----~~~~p~lIev~i~~ 522 (535)
T TIGR03394 490 GVRVRTRAELAAALDKAFA----TRGRFQLIEAMLPR 522 (535)
T ss_pred ceEeCCHHHHHHHHHHHHh----cCCCeEEEEEECCc
Confidence 8999998888777777764 23358899998763
No 259
>PRK05858 hypothetical protein; Provisional
Probab=90.00 E-value=1.5 Score=47.09 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=71.1
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CCC---CC-CCcCHhhhh
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG---DF-QELDQVEAV 131 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~~---~~-q~~d~~~~~ 131 (482)
+|.|.+.+. +|+.++++--| |+.-.+.-|.+|...++|+++|.-.-..... +.. .+ ...|...+.
T Consensus 415 ~aiGa~la~p~r~vv~i~GDG-~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA 493 (542)
T PRK05858 415 YALAARLARPSRQVVLLQGDG-AFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVV 493 (542)
T ss_pred HHHHHHHhCCCCcEEEEEcCc-hhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHH
Confidence 444555443 57777777655 4555567888888999999999876532210 111 11 346777788
Q ss_pred ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.+.-+..++++++++.+.+++|++ . .+|+.|++..|
T Consensus 494 ~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIev~~~ 530 (542)
T PRK05858 494 RALGGHGELVTVPAELGPALERAFA----S-GVPYLVNVLTD 530 (542)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh----C-CCcEEEEEEEC
Confidence 8887888899999998888887774 2 48999999986
No 260
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=89.98 E-value=24 Score=37.58 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=95.5
Q ss_pred cCCcHHHHHHHHHHhcCC--CEEEec----CCc-ChHHHHHHHHhCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590 12 AQIDGNTLAAKSLSLFGA--THMFGV----VGI-PVTSLANRAVQLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLTV 83 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv--~~vFgv----pG~-~~~~l~~al~~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~t 83 (482)
...+..+++.+.|.+..- +.++++ |++ ....|-..+ --+|+ ..--||.|+-+|.|.|...-||.|++-+
T Consensus 314 ~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~f---P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS 390 (627)
T COG1154 314 SAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKF---PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS 390 (627)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhC---chhheehhhhHHHHHHHHHHHHhCCCCCEEEEec
Confidence 445677888888777653 345444 222 333333322 12344 2357999999999999999999988865
Q ss_pred CChhhHhhH-HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC-CcCcHHHHHHHHHHHhhcC
Q 011590 84 SGPGCVHGL-AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK-DITEVPKCVAQVLERAVSG 161 (482)
Q Consensus 84 ~GpG~~N~~-~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~-~~~~~~~~l~~A~~~a~~~ 161 (482)
+= +.=+. -=++.-..++.||++..-....-......||..=-+++++.+-....... +.+++ ++.+.+|...
T Consensus 391 TF--LQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el----~~ml~ta~~~ 464 (627)
T COG1154 391 TF--LQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEEL----RQMLYTALAQ 464 (627)
T ss_pred HH--HHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHH----HHHHHHHHhc
Confidence 31 11122 23455667899999987533222222234666444788999988887764 33444 4555555565
Q ss_pred CCceEEEEcCcc
Q 011590 162 RPGGCYLDLPTD 173 (482)
Q Consensus 162 ~~gPv~l~iP~d 173 (482)
.-||+.|.+|..
T Consensus 465 ~~gP~AiRyPrg 476 (627)
T COG1154 465 DDGPVAIRYPRG 476 (627)
T ss_pred CCCCeEEEecCC
Confidence 558999999975
No 261
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.94 E-value=0.27 Score=52.97 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=40.7
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccC--ChHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGF--SAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~--~~~eL~T~~r~~l~i~~~ 482 (482)
..|..|.++|.|+|.|+|. .++.|++++|||+++- ....|-.+..+++|+++|
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~I 169 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIII 169 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEE
Confidence 3466677899999988883 3578999999999986 333577777888998765
No 262
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=89.93 E-value=0.72 Score=49.76 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=73.7
Q ss_pred CcEEecCchH---HHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----CC--C---
Q 011590 52 VRFIAFHNEQ---SAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----FG--R--- 119 (482)
Q Consensus 52 i~~v~~~~E~---~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----~~--~--- 119 (482)
.+++....-. .+.-+|.|.+.+.+|+.+|++--| ++.-.++.+.+|...++|+++|.-+-.... .. .
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~GDG-sf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~ 494 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALIGDL-SFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEP 494 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEechH-HhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcc
Confidence 5555443321 245567888877778887777544 333335789999999999999987654311 00 0
Q ss_pred ------CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 120 ------GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 120 ------~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.....|-..+.+.+.-...++++++++.+.+++|+ . +++|+.|++..|
T Consensus 495 ~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~-~~~p~lIev~id 549 (568)
T PRK07449 495 VFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----P-TPGLTVIEVKTN 549 (568)
T ss_pred hhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----c-CCCCEEEEEeCC
Confidence 001224556666666666778888777766666654 4 358999999876
No 263
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.86 E-value=1.7 Score=46.74 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=71.2
Q ss_pred HHHHHHhHh--CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCCCC----CCCcCHhhhh
Q 011590 66 AASAYGYLT--GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRGD----FQELDQVEAV 131 (482)
Q Consensus 66 ~A~g~ar~t--gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~~~----~q~~d~~~~~ 131 (482)
+|.|.+.+. +|+.++++--| ++.-.+..|..|...++|+++|.-+-.... .+... +...|...+.
T Consensus 404 aaiGa~la~p~~~~Vv~i~GDG-sf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA 482 (549)
T PRK06457 404 GSVGASFAVENKRQVISFVGDG-GFTMTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIA 482 (549)
T ss_pred HHHHHHhcCCCCCeEEEEEccc-HHhhhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHH
Confidence 567777665 57888887665 455556889999999999999887654321 01111 1134666777
Q ss_pred ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.-...++++++++...+++|+. ..||+.|+|-.|-
T Consensus 483 ~a~G~~~~~v~~~~el~~al~~a~~-----~~~p~lIeV~i~~ 520 (549)
T PRK06457 483 ESIGFKGFRLEEPKEAEEIIEEFLN-----TKGPAVLDAIVDP 520 (549)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHHh-----CCCCEEEEEEeCc
Confidence 7777777889988888777777663 2489999988874
No 264
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.73 E-value=1.6 Score=47.11 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=73.9
Q ss_pred HHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCCC----CC-CCcCHhh
Q 011590 65 YAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGRG----DF-QELDQVE 129 (482)
Q Consensus 65 ~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~~----~~-q~~d~~~ 129 (482)
-+|.|.+.+. +|+.++++--| |+.=....|..|...++|+++|.-+-.... .+.. .+ ...|...
T Consensus 428 paAiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~ 506 (572)
T PRK06456 428 PAAMGAKLARPDKVVVDLDGDG-SFLMTGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVK 506 (572)
T ss_pred HHHHHHHHhCCCCeEEEEEccc-hHhcchHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHH
Confidence 4677877776 57777777665 355556899999999999999987664321 0110 12 2367778
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.+.-+..++++++++.+.+.+|+. . .||..|++..|-
T Consensus 507 ~A~a~G~~~~~v~~~~eL~~al~~a~~----~-~~p~lIev~v~~ 546 (572)
T PRK06456 507 LAEAFGALGFNVTTYEDIEKSLKSAIK----E-DIPAVIRVPVDK 546 (572)
T ss_pred HHHHCCCeeEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCc
Confidence 888888888899988887777766653 3 489999999874
No 265
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.59 E-value=2 Score=46.24 Aligned_cols=149 Identities=11% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHhcCCCEEEecCCcChHH-HHHHHH-hCCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHH
Q 011590 20 AAKSLSLFGATHMFGVVGIPVTS-LANRAV-QLGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 20 l~~~L~~~Gv~~vFgvpG~~~~~-l~~al~-~~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ 93 (482)
+++.|.+.-=+.++..=++.... ....+. ...-+++.... =..+.-+|.|.+.++ +|+.++++--| |+.=...
T Consensus 371 ~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~ 449 (561)
T PRK06048 371 VIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDG-SFQMNSQ 449 (561)
T ss_pred HHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCc-hhhccHH
Confidence 45555543224444333332222 222332 23345554322 122555677877775 57888887766 4555567
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccC----------CCC---CC-CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDF----------GRG---DF-QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAV 159 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~----------~~~---~~-q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~ 159 (482)
.|.+|...++|+++|.-.-..... +.. .+ ...|...+.+.+.-+..++++++++.+.|++|+.
T Consensus 450 eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~al~~a~~--- 526 (561)
T PRK06048 450 ELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRPAIEEAVA--- 526 (561)
T ss_pred HHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh---
Confidence 899999999999999876542210 010 11 2357777888887788899998888777777763
Q ss_pred cCCCceEEEEcCcch
Q 011590 160 SGRPGGCYLDLPTDV 174 (482)
Q Consensus 160 ~~~~gPv~l~iP~dv 174 (482)
. .||+.|++..|-
T Consensus 527 -~-~~p~liev~~~~ 539 (561)
T PRK06048 527 -S-DRPVVIDFIVEC 539 (561)
T ss_pred -C-CCCEEEEEEecC
Confidence 2 389999998764
No 266
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.52 E-value=1.7 Score=46.76 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-------CCC----CC-CCcCHhhh
Q 011590 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-------GRG----DF-QELDQVEA 130 (482)
Q Consensus 63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-------~~~----~~-q~~d~~~~ 130 (482)
+.-+|.|.+.+.+|+.++++--|. +.=...-|.+|...++|+++|.-.-..... +.. .+ ...|-..+
T Consensus 422 ~lpaaiGaala~~~~vv~i~GDGs-f~m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~l 500 (554)
T TIGR03254 422 GMGYAIAAAVETGKPVVALEGDSA-FGFSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKM 500 (554)
T ss_pred hHHHHHHHHhcCCCcEEEEEcCch-hcccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHH
Confidence 334566766667788887775553 333346788999999999998876542111 100 11 23466677
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.+.-...++++++++.+.+++|+ .. .||+.|++..|
T Consensus 501 a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lIev~id 538 (554)
T TIGR03254 501 MKAFGGVGYNVTTPDELKAALNEAL----AS-GKPTLINAVID 538 (554)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEEC
Confidence 7888777889998888777776665 32 48999999876
No 267
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.52 E-value=1.5 Score=47.66 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC---CC-CC-CcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR---GD-FQ-ELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~---~~-~q-~~d~ 127 (482)
+.-+|.|.+.+. .|+.++++--| |+.=...-|..|...++|++++.-+-.... .+. .. +. ..|.
T Consensus 435 glpaaiGa~lA~p~r~Vv~i~GDG-~f~m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 513 (595)
T PRK09107 435 GLPAALGVQIAHPDALVIDIAGDA-SIQMCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDF 513 (595)
T ss_pred hHHHHHHHHHhCCCCeEEEEEcCc-hhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCH
Confidence 344566666665 46777776554 344444789999999999999987664321 011 01 11 2467
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-+..++++++++.+.+++|+. . .+|+.|+++.|-
T Consensus 514 ~~lA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIeV~i~~ 555 (595)
T PRK09107 514 VKLAEAYGAVGIRCEKPGDLDDAIQEMID----V-DKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEecC
Confidence 77888888888999998888777776664 2 489999999874
No 268
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=89.47 E-value=1.8 Score=46.93 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=71.4
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhC-----CCcEEEEeCCCCccc---------CCCC------CCCC
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMIN-----TWPIVMISGSCDQKD---------FGRG------DFQE 124 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~-----~~Pvl~i~g~~~~~~---------~~~~------~~q~ 124 (482)
+|.|.+.+. +|+.++++--|.=..|.+.-|.+|... ++|+++|.-.-.... .+.. .+..
T Consensus 423 aaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~ 502 (597)
T PRK08273 423 YAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPD 502 (597)
T ss_pred HHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCC
Confidence 566666665 578887775553223334678888888 899999887654220 1111 1234
Q ss_pred cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 125 ~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.|...+.+.+.-...++++.+++.+.+++|+. ..||+.|++..|-
T Consensus 503 ~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~~-----~~~p~lIeV~~~~ 547 (597)
T PRK08273 503 VPYARFAELLGLKGIRVDDPEQLGAAWDEALA-----ADRPVVLEVKTDP 547 (597)
T ss_pred CCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 56778888888888899998888777777764 2489999998864
No 269
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=89.41 E-value=1.6 Score=46.71 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=69.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCCC-----CCCCcCHh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGRG-----DFQELDQV 128 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~~-----~~q~~d~~ 128 (482)
+.-+|.|.+.+. +|+.+|++--|. +.-.+..|..|...++|++++.-+-.... .+.+ .+...|..
T Consensus 412 ~lp~aiGa~la~p~~~vv~i~GDG~-f~~~~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 490 (530)
T PRK07092 412 GLPAAVGVALAQPGRRVIGLIGDGS-AMYSIQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFV 490 (530)
T ss_pred hHHHHHHHHHhCCCCeEEEEEeCch-HhhhHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHH
Confidence 334677777665 577777776553 44456899999999999999886554211 0111 12345677
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+.+.+.-...++++++++.+.+++|+ .. .||+.|++..|
T Consensus 491 ~~a~~~G~~~~~v~~~~~l~~al~~a~----~~-~~p~liev~~d 530 (530)
T PRK07092 491 ALARGYGCEAVRVSDAAELADALARAL----AA-DGPVLVEVEVA 530 (530)
T ss_pred HHHHHCCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEcC
Confidence 788887777778887766655555554 43 48999998765
No 270
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=89.38 E-value=1.6 Score=43.21 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=66.7
Q ss_pred HHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCC--CCCCcCHhhhhcccccee
Q 011590 67 ASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRG--DFQELDQVEAVKPFSKFA 138 (482)
Q Consensus 67 A~g~ar~t---gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~~~~~~~k~~ 138 (482)
|.|.+++. +...++++..|=|..+. ..++..|...++|+|+|.-+-........ .....|.....+.+.-..
T Consensus 119 AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~ 198 (315)
T TIGR03182 119 ATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPG 198 (315)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCE
Confidence 45555543 23345555567776652 24577788889999999877521111100 011234455556655556
Q ss_pred eecCC--cCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 139 VKAKD--ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 139 ~~~~~--~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
.+++. +.++.+.+.+|++.+..++ ||+.|++-..=+
T Consensus 199 ~~Vdg~d~~av~~a~~~A~~~ar~~~-gP~lIe~~t~R~ 236 (315)
T TIGR03182 199 ERVDGMDVLAVREAAKEAVERARSGK-GPILLEMKTYRF 236 (315)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHccC-CCEEEEEeCCcC
Confidence 67764 4577888899999888865 999999966543
No 271
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=89.32 E-value=14 Score=41.77 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=98.9
Q ss_pred CCcEEe-cCchHHHHH--HHHHHHhH-hCCcEEEEEc-CCh-hhHhhHHHHHH-hhhCCCcEEEEeCCCCcccCCCC-CC
Q 011590 51 GVRFIA-FHNEQSAGY--AASAYGYL-TGKPGILLTV-SGP-GCVHGLAGLSN-GMINTWPIVMISGSCDQKDFGRG-DF 122 (482)
Q Consensus 51 ~i~~v~-~~~E~~A~~--~A~g~ar~-tgk~~v~~~t-~Gp-G~~N~~~ai~~-A~~~~~Pvl~i~g~~~~~~~~~~-~~ 122 (482)
.=+++. --.|+++.. +|.|-++. .|++.+.+++ ..+ |+.-+.-=|-. +-+...++++.+.......-+.| .|
T Consensus 564 PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qH 643 (891)
T PRK09405 564 DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQH 643 (891)
T ss_pred CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccC
Confidence 345553 478999888 88887775 4554444433 333 33333332332 34455666666655544443333 35
Q ss_pred CCcCHhhhhccccce-eeecCCcCcHHHHHHHHHHHhhcCCCc--eEEEEcC-cchhccccChhHHHHHHHhhhhhcccc
Q 011590 123 QELDQVEAVKPFSKF-AVKAKDITEVPKCVAQVLERAVSGRPG--GCYLDLP-TDVLHQTISVSEAEKLLKEAESAKETV 198 (482)
Q Consensus 123 q~~d~~~~~~~~~k~-~~~~~~~~~~~~~l~~A~~~a~~~~~g--Pv~l~iP-~dv~~~~~~~~~~~~~~~~~~~~~~~~ 198 (482)
|+..-..+++.+... ++.+.+..++..+++.+++.+.... + |+||.+. ........++..
T Consensus 644 qdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~-~~~~yYlrl~ne~~~~~~~pe~~--------------- 707 (891)
T PRK09405 644 EDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQ-ENVFYYITVMNENYHQPAMPEGA--------------- 707 (891)
T ss_pred CchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcC-CCeEEEEEeCCCCCCCCCCCccc---------------
Confidence 665555688887554 4456677888889999988766333 4 7889986 111111111000
Q ss_pred cCCCCCHHHHHHHHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCc--Ee
Q 011590 199 TQGGIVNSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIP--FL 250 (482)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~p--v~ 250 (482)
+..+-+....|+..+ .-|.|+|.|.-...+.++...|++..|+- |+
T Consensus 708 ------~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Vi 760 (891)
T PRK09405 708 ------EEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVW 760 (891)
T ss_pred ------ccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEE
Confidence 001111111232222 14888888887677777888888766654 55
No 272
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=89.24 E-value=1.9 Score=46.96 Aligned_cols=154 Identities=10% Similarity=0.004 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChH-HHHHHHHhCCCcEEecCchH---HHHHHHHHHHhHh-CCcEEEEEcCChhh
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVT-SLANRAVQLGVRFIAFHNEQ---SAGYAASAYGYLT-GKPGILLTVSGPGC 88 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~i~~v~~~~E~---~A~~~A~g~ar~t-gk~~v~~~t~GpG~ 88 (482)
++..+ +++.|.+.-=+.+|..=++... .....+....-.++....=. .+.-+|.|.+.+. +|+.++++--| |+
T Consensus 387 l~~~~-v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG-~f 464 (616)
T PRK07418 387 IYPQE-VLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDA-SF 464 (616)
T ss_pred cCHHH-HHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcch-Hh
Confidence 44433 4555555422555554444322 22233332223344332211 1233566666665 67777777555 33
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CCC----CC--CCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDF---------GRG----DF--QELDQVEAVKPFSKFAVKAKDITEVPKCVAQ 153 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~~----~~--q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~ 153 (482)
.=.+.-|..|...++|+++|.-.-..... +.. .+ ...|-..+.+.+.-+..++++++++.+.+++
T Consensus 465 ~m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~~al~~ 544 (616)
T PRK07418 465 LMNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVISERDQLKDAIAE 544 (616)
T ss_pred hhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHH
Confidence 33356788999999999999876543210 000 11 2356677888888888999998888777777
Q ss_pred HHHHhhcCCCceEEEEcCcch
Q 011590 154 VLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 154 A~~~a~~~~~gPv~l~iP~dv 174 (482)
|+. . .+|+.|++..|-
T Consensus 545 a~~----~-~~p~lIeV~i~~ 560 (616)
T PRK07418 545 ALA----H-DGPVLIDVHVRR 560 (616)
T ss_pred HHh----C-CCCEEEEEEecC
Confidence 663 3 389999998873
No 273
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.24 E-value=4.9 Score=39.35 Aligned_cols=116 Identities=15% Similarity=0.066 Sum_probs=69.9
Q ss_pred CCcEEecCchHHHHHHHHHHHhHh-----CCcEEE-EEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCC---------cc
Q 011590 51 GVRFIAFHNEQSAGYAASAYGYLT-----GKPGIL-LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD---------QK 115 (482)
Q Consensus 51 ~i~~v~~~~E~~A~~~A~g~ar~t-----gk~~v~-~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~---------~~ 115 (482)
++-++.+.++.+.+. |.|.+++. +...|+ +.--|-.....+.++-.|...+.|+++|.=+.. +.
T Consensus 63 ~~~~i~~~~G~~~~~-A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~ 141 (300)
T PRK11864 63 TVPVLHTAFAATAAV-ASGIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSS 141 (300)
T ss_pred cccceeehhhChHHH-HHHHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCC
Confidence 566777888877655 56777753 223333 333333334456899999999999999975432 11
Q ss_pred cCCCC----------CCCCcCHhhhhccc-cceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 116 DFGRG----------DFQELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 116 ~~~~~----------~~q~~d~~~~~~~~-~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
..+.+ .....|...++..+ ..|..++.. .+. ..+.++++.|...+ ||.+|.+
T Consensus 142 ~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~~-~~~~~~i~~A~~~~-Gps~I~~ 204 (300)
T PRK11864 142 STPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AYP-EDFIRKLKKAKEIR-GFKFIHL 204 (300)
T ss_pred CCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CCH-HHHHHHHHHHHhCC-CCEEEEE
Confidence 11111 12335777766654 457776643 333 34467777777754 9999875
No 274
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=89.20 E-value=1.8 Score=46.75 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=72.4
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--CC-C-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--GD-F-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~~-~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--|. +.=...-|.+|...++|++++.-+-.... .++ +. + ...|-
T Consensus 426 glpaaiGa~la~p~~~vv~i~GDG~-f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 504 (572)
T PRK08979 426 GLPAAMGVKFAMPDETVVCVTGDGS-IQMNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDF 504 (572)
T ss_pred hhhHHHhhhhhCCCCeEEEEEcchH-hhccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCH
Confidence 444566666664 467777775553 33345789999999999999987665221 011 11 1 12566
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+..+..++++++++.+.+++|+. .+.+|+.|++..|-
T Consensus 505 ~~~A~a~G~~~~~v~~~~eL~~al~~a~~----~~~~p~lIev~i~~ 547 (572)
T PRK08979 505 AKIAEAYGHVGIRISDPDELESGLEKALA----MKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHHh----cCCCcEEEEEEeCC
Confidence 77888888888999998888777777764 23489999998873
No 275
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=88.87 E-value=0.74 Score=42.54 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=45.8
Q ss_pred hcCCEEEEecCccCcccccCCCC-CCCCCCcEEEEeCCchhh--cccC-CceeEeccHHHHHHHHHHhhh
Q 011590 276 GQCDVALVVGARLNWLLHFGEPP-KWSKDVKFVLVDVCKEEI--ELRK-PHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 276 ~~aDlvl~iG~~~~~~~~~g~~~-~~~~~~~ii~id~d~~~~--~~~~-~~~~i~~D~~~~l~~L~~~l~ 341 (482)
..+|++|++|+++..+. +...+ ..+...+=+.|+.+..-. +..+ .|+.+.+|....+++|.+.|.
T Consensus 211 ~~~dl~lV~GTSL~V~P-FAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLG 279 (314)
T KOG2682|consen 211 LKVDLLLVMGTSLQVQP-FASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLG 279 (314)
T ss_pred cccceEEEeccceeeee-cccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhC
Confidence 45899999999997543 33322 234455666677766542 3333 499999999999999999985
No 276
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=88.86 E-value=1.1 Score=42.85 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred CCCCCCcccch--HHHHhhhcCCEEEEecCccCcccccCCC-CCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHH
Q 011590 259 LPDTHPLAATA--ARSLAIGQCDVALVVGARLNWLLHFGEP-PKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEM 335 (482)
Q Consensus 259 ~~~~hp~~~G~--~~~~~l~~aDlvl~iG~~~~~~~~~g~~-~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~ 335 (482)
.++++.+-... .+....++||++|.+|+++.-...+.++ .....+.|++-||.++...+ ...++.|.|+.+.++..
T Consensus 196 ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hD-k~A~l~Ihg~vd~Vm~~ 274 (353)
T KOG1905|consen 196 LDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHD-KIANLKIHGKVDLVMAS 274 (353)
T ss_pred ccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCccc-chhheeehhhHHHHHHH
Confidence 45566555542 3456778999999999999754433222 12246789999999875443 23478899999999999
Q ss_pred HHHhhhc
Q 011590 336 INKEIKD 342 (482)
Q Consensus 336 L~~~l~~ 342 (482)
|.+.|.-
T Consensus 275 lm~~Lgv 281 (353)
T KOG1905|consen 275 LMELLGV 281 (353)
T ss_pred HHHHhCC
Confidence 9998863
No 277
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=88.81 E-value=1.6 Score=46.72 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C-------CCC--CCCCc--C-Hhhhh
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------GRG--DFQEL--D-QVEAV 131 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~-------~~~--~~q~~--d-~~~~~ 131 (482)
+|.|...+. +|+.++++--|.-..| +.-|.+|...++|+++|.-.-.... . ..+ ...++ . -..+.
T Consensus 416 aAIGAkla~P~r~Vv~i~GDG~F~m~-~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klA 494 (550)
T COG0028 416 AAIGAKLAAPDRKVVAIAGDGGFMMN-GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLA 494 (550)
T ss_pred HHHHHHhhCCCCcEEEEEcccHHhcc-HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHH
Confidence 455556655 4778888877654444 7899999999999999987654221 0 011 11111 1 33555
Q ss_pred ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
+.+.-...++++++++.+.+++|+ . .++|+.|+++.|--
T Consensus 495 ea~G~~g~~v~~~~el~~al~~al----~-~~~p~lidv~id~~ 533 (550)
T COG0028 495 EAYGAKGIRVETPEELEEALEEAL----A-SDGPVLIDVVVDPE 533 (550)
T ss_pred HHcCCeeEEeCCHHHHHHHHHHHH----h-CCCCEEEEEEecCc
Confidence 666667778888888766666666 4 34899999998864
No 278
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=88.79 E-value=15 Score=33.35 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=61.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCC-cEEEEeCCCCcc-cCCC-CC-CCCcCHhhhhcccc-c
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTW-PIVMISGSCDQK-DFGR-GD-FQELDQVEAVKPFS-K 136 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~-Pvl~i~g~~~~~-~~~~-~~-~q~~d~~~~~~~~~-k 136 (482)
+.-+|.|.+.+. +++.+|++--| ++.-.+..|..+...+. |+++|.-+-... ..+. .. ....|...+.+.+. +
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~GDG-~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d~~~~A~a~G~~ 131 (188)
T cd03371 53 ASQIALGIALARPDRKVVCIDGDG-AALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACGYR 131 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCc-HHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCCHHHHHHHcCCc
Confidence 344566666554 56777776554 33334567888777776 576666544322 1111 01 12356666666663 3
Q ss_pred eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 137 FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 137 ~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+..++.+++++.+.+++|+ .. .+|+.|++..|-
T Consensus 132 ~~~~v~~~~el~~al~~a~----~~-~~p~lIev~~~~ 164 (188)
T cd03371 132 AVYEVPSLEELVAALAKAL----AA-DGPAFIEVKVRP 164 (188)
T ss_pred eEEecCCHHHHHHHHHHHH----hC-CCCEEEEEEecC
Confidence 4456777777665555554 43 489999988764
No 279
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=88.76 E-value=3.1 Score=41.55 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHh----CCCCEEEEcCCccccccHHHHHHHHHHhCCcE----------------eeCCCCC---
Q 011590 200 QGGIVNSDIDKAVSLLKE----AKKPLIVFGKGAAYARAEGELKKLVESTGIPF----------------LPTPMGK--- 256 (482)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~----a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv----------------~~t~~~~--- 256 (482)
+..+....++++++.|+. ..+.+.+.|.-+...++.++|.+|.+.==+-. +.|..|-
T Consensus 179 ~E~p~~~~~~~ia~~lr~~r~~gG~Iv~V~GPAvvhtga~~ala~Lir~GYV~~LlaGNAlAtHDiE~al~GTsLG~di~ 258 (407)
T TIGR00300 179 SERPVETLIEQIAWEMYEIRDKGGKIGVVAGPAVIHTGAAQALAHLIREGYVDALLAGNALAVHDIEQALYGTSLGVDIQ 258 (407)
T ss_pred cCCccHHHHHHHHHHHHHHHHCCCCEEEEecCeEEecCcHHHHHHHHHcCcccEEecchHHHHhhhhHhhhCcccccccc
Confidence 345566778888877754 45678888888888899999999988632222 2233332
Q ss_pred --CCCCCCCCccc---------ch-----------------H--------------------------------HHHhhh
Q 011590 257 --GLLPDTHPLAA---------TA-----------------A--------------------------------RSLAIG 276 (482)
Q Consensus 257 --g~~~~~hp~~~---------G~-----------------~--------------------------------~~~~l~ 276 (482)
..+|..|..++ |. + -...++
T Consensus 259 ~~~~v~~GH~~Hl~~IN~irraGSI~~aVe~G~l~~Gimy~cvk~~VPfVLAGSIRDDGPLPdvitDv~~AQ~amR~~~~ 338 (407)
T TIGR00300 259 RGIPVPGGHRHHLKAINSVRRAGGIRDAVEQGIIKKGVMYECVKNNIPYVLAGSIRDDGPLPDVITDVVRAQSKMRELLQ 338 (407)
T ss_pred ccccCCCchHHHHHHHHHHHHcCCHHHHHHhCCCccchHHHHHhCCCCEEEeeeccCCCCCCcchhhHHHHHHHHHHHhc
Confidence 23444444432 10 0 113567
Q ss_pred cCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc----cC-CceeEeccHHHHHHHHHHhhhc
Q 011590 277 QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL----RK-PHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~----~~-~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
++|+||.+.+-+-...+.+ ..+...+++.||++|....+ .. ..+.++.|+..||..|.++|.+
T Consensus 339 ~a~~vimlaTmLHSIAtGN---m~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~~ 406 (407)
T TIGR00300 339 GADMVLMLSTMLHSIAVGN---LLPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIKQ 406 (407)
T ss_pred cCCeehhHHHHHHHHhhcc---cccccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHhc
Confidence 8999999998887654432 23455799999999987643 22 2678999999999999988753
No 280
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.73 E-value=2.4 Score=45.93 Aligned_cols=107 Identities=16% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC--CC-CC-CcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR--GD-FQ-ELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~--~~-~q-~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| |+.=...-|..|...++|+++|.-+-.... .++ .. ++ ..|-
T Consensus 442 glpaaiGa~lA~p~r~Vv~i~GDG-sf~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~ 520 (587)
T PRK06965 442 GLPYAMGIKMAHPDDDVVCITGEG-SIQMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDF 520 (587)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcch-hhhcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCH
Confidence 345677777765 57777777555 344445789999999999999997654321 001 11 11 2466
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+.-+..++++.+++.+.+++|++ .+.+|+.|++..|-
T Consensus 521 ~~iA~a~G~~~~~v~~~~eL~~al~~a~~----~~~~p~lieV~i~~ 563 (587)
T PRK06965 521 VKLAEAYGHVGMRIEKTSDVEPALREALR----LKDRTVFLDFQTDP 563 (587)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHHh----cCCCcEEEEEEecc
Confidence 77888888888999998888777776665 22489999998873
No 281
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=88.64 E-value=2 Score=41.78 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc-----------cCCC-------CCC
Q 011590 62 SAGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK-----------DFGR-------GDF 122 (482)
Q Consensus 62 ~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~-----------~~~~-------~~~ 122 (482)
.+.-+|.|...+. .++.++++--|-...-.++.+..|...++||++|.-+-... ..|. +..
T Consensus 57 ~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~ 136 (287)
T TIGR02177 57 RALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNI 136 (287)
T ss_pred cHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCcc
Confidence 3556778888775 56777777555433355678999999999999997543211 0110 001
Q ss_pred ---CCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 123 ---QELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 123 ---q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
...+...+...++..... ..+++++.+.| +.|+.. +||++|++...
T Consensus 137 ~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ai----~~Al~~-~GpslIeV~~p 186 (287)
T TIGR02177 137 QDPVNPLLLAIALGYTFVARGFSGDVAHLKEII----KEAINH-KGYALVDILQP 186 (287)
T ss_pred CCCCCHHHHHHhCCCCeEEEEecCCHHHHHHHH----HHHHhC-CCCEEEEEeCC
Confidence 112333444444322222 35555555444 445454 48999888654
No 282
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=88.62 E-value=1.9 Score=46.59 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=72.0
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-------CC--C---CCC-CCcCHhh
Q 011590 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-------FG--R---GDF-QELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-------~~--~---~~~-q~~d~~~ 129 (482)
+.-+|.|.+.+.+|+.++++--|. +.=.+.-|..|...++|+++|.-.-..-. .+ . ..+ ...|-..
T Consensus 429 glpaaiGa~la~~~~vv~i~GDG~-f~m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 507 (569)
T PRK09259 429 GMGYAIAAAVETGKPVVAIEGDSA-FGFSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDK 507 (569)
T ss_pred cHHHHHHHHhcCCCcEEEEecCcc-ccccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHH
Confidence 445677777777788777775553 33334678889999999999987654210 01 0 011 2346667
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.+.-...++++++++.+.+++|+. . .||+.|++..|-
T Consensus 508 lA~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~lIev~id~ 547 (569)
T PRK09259 508 MMEAFGGVGYNVTTPDELRHALTEAIA----S-GKPTLINVVIDP 547 (569)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHHh----C-CCCEEEEEEECC
Confidence 777777778899998888777777753 2 489999999873
No 283
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=88.61 E-value=0.38 Score=53.60 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=38.8
Q ss_pred CCCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~ 478 (482)
..|+||-|++.|+|.|++.+ +.+|++|+|||-++=... .+..+.+++|.
T Consensus 187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLd 248 (889)
T TIGR03186 187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLD 248 (889)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence 46999999999999988622 578999999999876533 46667788874
No 284
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=88.41 E-value=1.3 Score=44.99 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC--CCcccchHHHHhhhcCCE
Q 011590 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT--HPLAATAARSLAIGQCDV 280 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~--hp~~~G~~~~~~l~~aDl 280 (482)
+++++.+++.|++.+ ...++.|+.. ..+....+.+|++.+|.+-+.+...-...+.. ..+.+|... .-+++||+
T Consensus 71 deAl~~ia~~l~~~~~~si~~~~g~~~-~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~-~di~~ad~ 148 (375)
T cd02773 71 EEALAAIAKALKGVKPDEIAAIAGDLA-DVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTI-AGIEEADA 148 (375)
T ss_pred HHHHHHHHHHHhhcCcCcEEEEeCCCC-CHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCH-HHHhhCCE
Confidence 467788888888764 5566655433 22444568899999998765443221111111 112222222 23589999
Q ss_pred EEEecCccCcccc-cC-CC-CCC-CCCCcEEEEeCCc
Q 011590 281 ALVVGARLNWLLH-FG-EP-PKW-SKDVKFVLVDVCK 313 (482)
Q Consensus 281 vl~iG~~~~~~~~-~g-~~-~~~-~~~~~ii~id~d~ 313 (482)
||++|+++.+... .. +. ..+ ..+++++.||+..
T Consensus 149 il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~ 185 (375)
T cd02773 149 VLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPV 185 (375)
T ss_pred EEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCcc
Confidence 9999998853211 00 11 112 2368999998754
No 285
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=87.90 E-value=9.5 Score=41.57 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=74.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-CC---CC-----C
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-RG---DF-----Q 123 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~~---~~-----q 123 (482)
+.-+|.|.+.+. +|+.+|++--| |+.=....|.+|...++|+++|.-+-.... .+ .. .+ .
T Consensus 452 glpaaiGa~la~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~ 530 (612)
T PRK07789 452 AVPAAMGAKVGRPDKEVWAIDGDG-CFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHR 530 (612)
T ss_pred hhhhHHhhhccCCCCcEEEEEcch-hhhccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCC
Confidence 455667777764 67877776555 455456789999999999999987654221 00 00 11 1
Q ss_pred CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 124 ~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..|...+.+.+.-+..++++++++.+.|++|+.. ..||+.|++..|-
T Consensus 531 ~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~~~----~~~p~lIev~i~~ 577 (612)
T PRK07789 531 IPDFVKLAEAYGCVGLRCEREEDVDAVIEKARAI----NDRPVVIDFVVGK 577 (612)
T ss_pred CCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhc----CCCcEEEEEEECC
Confidence 2577778888888888999988887777777753 1389999999874
No 286
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=87.85 E-value=2.2 Score=46.23 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=71.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC----CCC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR----GDF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~----~~~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| ++.-..+.|.+|...++|+++|.-+-.... .+. ..+ ...|.
T Consensus 424 ~lpaaiGa~la~p~~~Vv~i~GDG-sf~m~~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~ 502 (586)
T PRK06276 424 GFPAAIGAKVAKPDANVIAITGDG-GFLMNSQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDF 502 (586)
T ss_pred chhHHHhhhhhcCCCcEEEEEcch-HhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCH
Confidence 445677777765 56777776555 344446789999999999999987664311 011 011 23567
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..+.+.+.-+..++++++++...+++|+ .. .||..|++..|
T Consensus 503 ~~la~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~lIeV~i~ 543 (586)
T PRK06276 503 VKLAESYGVKADRVEKPDEIKEALKEAI----KS-GEPYLLDIIID 543 (586)
T ss_pred HHHHHHCCCeEEEECCHHHHHHHHHHHH----hC-CCCEEEEEEec
Confidence 7788888777888998888766666665 32 48899988765
No 287
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=87.76 E-value=2.7 Score=44.99 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=64.1
Q ss_pred HHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CC-CCC---CCCcCHhhhhccccc
Q 011590 67 ASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FG-RGD---FQELDQVEAVKPFSK 136 (482)
Q Consensus 67 A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~-~~~---~q~~d~~~~~~~~~k 136 (482)
|.|.+.+. +|+.+|++--| |+.=.+.-|.+|...++|+++|.-+-.... .+ ... ....|-..+.+.+..
T Consensus 413 aiGa~la~p~~~vv~i~GDG-~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~ 491 (539)
T TIGR03393 413 AFGAQTACPNRRVILLIGDG-SAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSL 491 (539)
T ss_pred HHHHHhcCCCCCeEEEEcCc-HHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCC
Confidence 44444443 56777777555 344445789999999999999987654321 11 011 122355556665543
Q ss_pred ----eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 137 ----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 137 ----~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+..++++.+++.+.+++|+ . ..||+.|++..|
T Consensus 492 ~~~~~~~~v~~~~el~~al~~a~----~-~~~p~liev~i~ 527 (539)
T TIGR03393 492 DPQSECWRVSEAEQLADVLEKVA----A-HERLSLIEVVLP 527 (539)
T ss_pred CCccceEEeccHHHHHHHHHHHh----c-cCCeEEEEEEcC
Confidence 3788888888777776665 3 348999999876
No 288
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=87.65 E-value=0.4 Score=44.33 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=35.3
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEec
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVG 327 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~ 327 (482)
..+.+++||++|+||+++..+.....+.. ...++++|.||.++...... .++.+.+
T Consensus 149 a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~-~d~~~~~ 205 (206)
T cd01410 149 AAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKL-ADLVIHG 205 (206)
T ss_pred HHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCcc-ccEEEeC
Confidence 34567899999999999875433222211 13568899999987655422 2454444
No 289
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=87.48 E-value=3 Score=41.71 Aligned_cols=111 Identities=20% Similarity=0.189 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCc----CHhhhhc
Q 011590 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL----DQVEAVK 132 (482)
Q Consensus 60 E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~----d~~~~~~ 132 (482)
=.-|+.+|.+..+...+..|+++..|=|++|- .-++--|-.-+.|||++.=.......-....|.. .+....-
T Consensus 142 ~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~ay 221 (358)
T COG1071 142 IPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAY 221 (358)
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhcc
Confidence 33455556555555435558888888888774 4577778888999999986553332211112321 2233333
Q ss_pred cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
.+......=.++..+.+.+.+|...|..+. ||+.|+.=
T Consensus 222 gipgv~VDG~D~~avy~~~~~A~e~AR~g~-GPtLIE~~ 259 (358)
T COG1071 222 GIPGVRVDGNDVLAVYEAAKEAVERARAGE-GPTLIEAV 259 (358)
T ss_pred CCCeEEECCcCHHHHHHHHHHHHHHHHcCC-CCEEEEEE
Confidence 344444455577789999999999999987 99999874
No 290
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=87.43 E-value=3.9 Score=44.40 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHHhHh-CCcEEEEEcCChhhH-hhHHHHHHhhhCCCcEEEEeCCCCccc-CCC------C------CCCCcCHhhh
Q 011590 66 AASAYGYLT-GKPGILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCDQKD-FGR------G------DFQELDQVEA 130 (482)
Q Consensus 66 ~A~g~ar~t-gk~~v~~~t~GpG~~-N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~~------~------~~q~~d~~~~ 130 (482)
+|.|.+.+. .|+.++++--| ++. +.+..|.+|...++|+++|.-+-.... .+. + ..+.+|...+
T Consensus 411 ~AiGa~~a~p~~~Vv~i~GDG-~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~i 489 (595)
T TIGR03336 411 VASGLSKAGEKQRIVAFIGDS-TFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEEL 489 (595)
T ss_pred HHhhhhhcCCCCCEEEEeccc-hhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHH
Confidence 455665544 46766666554 344 348999999999999999876553221 110 0 1134677778
Q ss_pred hccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.-...++.+++++.+ +.+|++.+... +||..|.+..+-
T Consensus 490 a~a~G~~~~~v~~~~~l~~-l~~al~~a~~~-~gp~li~v~~~C 531 (595)
T TIGR03336 490 CRASGVEFVEVVDPLNVKE-TIEVFKAALAA-EGVSVIIAKQPC 531 (595)
T ss_pred HHHcCCCEEEEeCcCCHHH-HHHHHHHHHhc-CCCEEEEEcccC
Confidence 8888777788888877643 35666666654 489999988764
No 291
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=87.17 E-value=7.1 Score=38.22 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=71.6
Q ss_pred CCcEEecCchHHHHHHHHHHHhHh---CC--cEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------
Q 011590 51 GVRFIAFHNEQSAGYAASAYGYLT---GK--PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD--------- 116 (482)
Q Consensus 51 ~i~~v~~~~E~~A~~~A~g~ar~t---gk--~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------- 116 (482)
+..++...+|.++++ |.|.+++. ++ ..+++.--|-.....+.+|..|...+.++++|.=+.....
T Consensus 63 ~~~~~~~~fg~~~a~-a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~ 141 (299)
T PRK11865 63 NVPWIHVAFENAAAV-ASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGS 141 (299)
T ss_pred ccccchhhhcchHHH-HHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCC
Confidence 466777777877765 56777753 33 5555555555556677899999999999999875543211
Q ss_pred CCC---------C------CCCCcCHhhhhccc-cceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 117 FGR---------G------DFQELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 117 ~~~---------~------~~q~~d~~~~~~~~-~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
... | .....|...++... +.|..++. +.+ +..+.++++.|...+ ||.+|.+=
T Consensus 142 Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~-~~~-~~~l~~~i~~A~~~~-Gps~I~v~ 209 (299)
T PRK11865 142 TPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATAS-IGY-PEDFMEKVKKAKEVE-GPAYIQVL 209 (299)
T ss_pred CCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEe-CCC-HHHHHHHHHHHHhCC-CCEEEEEE
Confidence 111 0 11235666665443 45666653 333 333456777776654 99998763
No 292
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=86.54 E-value=0.62 Score=51.56 Aligned_cols=49 Identities=18% Similarity=0.048 Sum_probs=38.8
Q ss_pred CCCcccchHHHHHHHhhhC-----------CCCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~-----------p~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~ 478 (482)
..|+||-|++.|+|.|++. .+++|++|+|||-++=... .+..+.+++|.
T Consensus 187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLd 248 (885)
T TIGR00759 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLD 248 (885)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence 4599999999999988864 3578999999999875433 46667788874
No 293
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=86.15 E-value=1.9 Score=44.31 Aligned_cols=110 Identities=21% Similarity=0.152 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCc-ccch---HHHHhhhcCCE
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-AATA---ARSLAIGQCDV 280 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~-~~G~---~~~~~l~~aDl 280 (482)
+++++.+++.|++++++.++.|+.. .......+.+|++.+|..+-. ...-+..+....+ ..|. ...+..++||+
T Consensus 63 deAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~ 140 (421)
T TIGR03129 63 EEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN-TASVCHGPSLLALQEVGWPSCTLGEVKNRADV 140 (421)
T ss_pred HHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc-cchhccccHHHHHHhcCCccccHHHHhhcCCE
Confidence 5788899999999999877655543 234445678999999874311 0000000000000 0011 11133347999
Q ss_pred EEEecCccCccccc--CC--------CCCC-CCCCcEEEEeCCchhh
Q 011590 281 ALVVGARLNWLLHF--GE--------PPKW-SKDVKFVLVDVCKEEI 316 (482)
Q Consensus 281 vl~iG~~~~~~~~~--g~--------~~~~-~~~~~ii~id~d~~~~ 316 (482)
||++|+++...... .+ ...- .++.++|.||+.....
T Consensus 141 il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t 187 (421)
T TIGR03129 141 IIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDT 187 (421)
T ss_pred EEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCc
Confidence 99999987542210 00 0001 3457899998865544
No 294
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=85.99 E-value=0.57 Score=44.54 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=47.4
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCC-C-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-W-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
....+++||++|++|++.-.+.-.+ .+. . ..+.+++.||..+.... ...+..+.+++..+++.|.+.+.
T Consensus 176 ~~~~~~~~d~liviGTSl~V~Paa~-~p~~~~~~g~~~i~iN~~~~~~~-~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 176 ALEALKEADLLIVIGTSLKVYPAAG-LPELAKRRGAKVIEINLEPTRLD-PIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred HHHHhccCCEEEEECcceEEcChhh-hhHHHHhcCCEEEEECCCcccCc-chhHHHHHhhHHHHHHHHHHHhh
Confidence 4456689999999999987654444 222 1 46788888888554332 12367788888888888877654
No 295
>PRK12474 hypothetical protein; Provisional
Probab=85.98 E-value=1.8 Score=46.11 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=68.5
Q ss_pred HHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------C---CC-------CCC-
Q 011590 64 GYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------G---RG-------DFQ- 123 (482)
Q Consensus 64 ~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~---~~-------~~q- 123 (482)
.-+|.|.+.+. +|+.+|++--| |+.=.+.-|.+|...++|+++|.-.-..... + .+ .+.
T Consensus 395 lpaAiGa~lA~p~r~vv~i~GDG-~f~m~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~ 473 (518)
T PRK12474 395 LPLAAGAAVAAPDRKVVCPQGDG-GAAYTMQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHN 473 (518)
T ss_pred HHHHHHHHHHCCCCcEEEEEcCc-hhcchHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCC
Confidence 34567777765 57777777555 3444458899999999999999876542210 0 00 011
Q ss_pred -CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 124 -ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 124 -~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
..|-..+.+.+.-...++++++++.+.+++|+. ..||+.|++.
T Consensus 474 ~~~d~~~lA~a~G~~~~rv~~~~eL~~al~~a~~-----~~~p~liev~ 517 (518)
T PRK12474 474 PELNWMKIAEGLGVEASRATTAEEFSAQYAAAMA-----QRGPRLIEAM 517 (518)
T ss_pred CCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHHc-----CCCCEEEEEE
Confidence 246667778877788899988888777777753 3489999874
No 296
>PRK07586 hypothetical protein; Validated
Probab=84.85 E-value=2.6 Score=44.77 Aligned_cols=150 Identities=11% Similarity=0.106 Sum_probs=85.9
Q ss_pred CcHHHHHHHHHHh-cCCCEEEecC-CcChHHHHHHHHh-CCCcEEecCchHH---HHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590 14 IDGNTLAAKSLSL-FGATHMFGVV-GIPVTSLANRAVQ-LGVRFIAFHNEQS---AGYAASAYGYLT-GKPGILLTVSGP 86 (482)
Q Consensus 14 ~~~~~~l~~~L~~-~Gv~~vFgvp-G~~~~~l~~al~~-~~i~~v~~~~E~~---A~~~A~g~ar~t-gk~~v~~~t~Gp 86 (482)
++-.+ +++.|.+ ..=+.++..= |+........+.- ..-+++.... .+ +.-+|.|.+.+. +|+.+|++--|
T Consensus 337 i~~~~-~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDG- 413 (514)
T PRK07586 337 LTPEA-IAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDG- 413 (514)
T ss_pred cCHHH-HHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEech-
Confidence 44444 3444443 3334444443 3333334333332 2234444332 22 233566766664 57777777555
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEeCCCCccc--------CCC---C-------CC--CCcCHhhhhccccceeeecCCcCc
Q 011590 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKD--------FGR---G-------DF--QELDQVEAVKPFSKFAVKAKDITE 146 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~--------~~~---~-------~~--q~~d~~~~~~~~~k~~~~~~~~~~ 146 (482)
|+.=.+..|.+|...++|+++|.-+-.... .+. + .+ ...|...+.+.+.-...+++++++
T Consensus 414 sf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~e 493 (514)
T PRK07586 414 SAMYTIQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAEE 493 (514)
T ss_pred HHHhHHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHHH
Confidence 344446899999999999988876443211 000 0 11 235777788888778889988888
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 147 VPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 147 ~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
+.+.+++|+ .. .||+.|++.
T Consensus 494 l~~al~~a~----~~-~~p~liev~ 513 (514)
T PRK07586 494 FADALAAAL----AE-PGPHLIEAV 513 (514)
T ss_pred HHHHHHHHH----cC-CCCEEEEEE
Confidence 766666665 33 489999875
No 297
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=84.82 E-value=1.4 Score=49.40 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=38.5
Q ss_pred CCCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~ 478 (482)
..|+||-|++.|+|.|+.++ +++|++|+|||-++=... .+..+.+++|.
T Consensus 201 ~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~Ld 262 (896)
T PRK13012 201 PTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLD 262 (896)
T ss_pred CCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCC
Confidence 45999999999999988854 378999999999865432 46666688874
No 298
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=84.56 E-value=3.3 Score=33.16 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=48.8
Q ss_pred EEEEcCCcccc-ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCC
Q 011590 222 LIVFGKGAAYA-RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKW 300 (482)
Q Consensus 222 vil~G~g~~~~-~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~ 300 (482)
++-+|.|...+ -+.+.|++.+++.|+.+-.+..+..-+... ....-+.++|+||.+|....... .|
T Consensus 4 i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~-------l~~~~i~~Ad~vi~~~~~~~~~~------rf 70 (96)
T cd05569 4 VTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENE-------LTAEDIAEADAVILAADVPVDDE------RF 70 (96)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCc-------CCHHHHhhCCEEEEecCCCCchh------hh
Confidence 34557777665 567889999999999877554443211111 12356889999999997654321 13
Q ss_pred CCCCcEEEEeCC
Q 011590 301 SKDVKFVLVDVC 312 (482)
Q Consensus 301 ~~~~~ii~id~d 312 (482)
.+.++++.+++
T Consensus 71 -~gk~v~~~~~~ 81 (96)
T cd05569 71 -AGKRVYEVSVA 81 (96)
T ss_pred -CCCeEEEecHH
Confidence 24477766664
No 299
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=84.35 E-value=3.7 Score=36.08 Aligned_cols=121 Identities=18% Similarity=0.163 Sum_probs=71.9
Q ss_pred HhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCC---------------------CCCCCCCCcccch-----
Q 011590 216 KEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK---------------------GLLPDTHPLAATA----- 269 (482)
Q Consensus 216 ~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~---------------------g~~~~~hp~~~G~----- 269 (482)
.-|++|||=+-+.+. +-..+++.+||+.+|+++=...+.+ |.=++.....-|-
T Consensus 2 LlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLFyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~ 80 (178)
T PF02006_consen 2 LLAKHPVISVNGNTA-ALVPEEIVELAKATGAKIEVNLFYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERA 80 (178)
T ss_pred CccCCCEEEEcccHH-HhChHHHHHHHHHhCCCEEEEcccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccc
Confidence 357999999877764 4677889999999999986554421 1100000000010
Q ss_pred -HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 270 -ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 270 -~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
...+-+-.||+||+= +.+-+..- ..-.-+.++|.||.+|..-.....++.|+-++--++..|.+..++
T Consensus 81 ~v~~~GIy~ADVVLVP---LEDGDR~E--AL~~mGK~VIaIDLNPLSRTar~AtitIVDni~RA~p~~~~~~~~ 149 (178)
T PF02006_consen 81 KVSKEGIYSADVVLVP---LEDGDRTE--ALVKMGKTVIAIDLNPLSRTARTATITIVDNITRAIPNMIEFARE 149 (178)
T ss_pred eECcccceeccEEEec---cCCCcHHH--HHHHcCCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHHHH
Confidence 011223456666653 21100000 001236789999999987766677899999988888888776543
No 300
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=84.28 E-value=1.2 Score=43.87 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=35.5
Q ss_pred CCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCChHHH----HHHHHcCcccccC
Q 011590 431 WGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEV----EVWLSCIIMISSI 482 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~~eL----~T~~r~~l~i~~~ 482 (482)
.+.+|..+|.|.|.++|. .+.-++++.|||+ .+-.++ --+..+++|++.|
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga--~~qG~~~EalN~A~~~~lPvifv 157 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGA--TSQGDFHEALNLAALWKLPVIFV 157 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGG--GGSHHHHHHHHHHHHTTTSEEEE
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcc--cccCccHHHHHHHhhccCCeEEE
Confidence 366777788888887773 4678999999999 333333 3344689998753
No 301
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.44 E-value=1.9 Score=45.18 Aligned_cols=112 Identities=12% Similarity=-0.036 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH----HHHh
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSLA 274 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~----~~~~ 274 (482)
+++++.+++.|++ .+...++.|.+...........+|+..+|.+-+.....-+..+...+..+|.. ...-
T Consensus 88 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~d 167 (461)
T cd02750 88 DEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQTDVPESAD 167 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCCCCCCChhH
Confidence 3556666666653 22222333323221223344678999999876543322221222333334431 1234
Q ss_pred hhcCCEEEEecCccCccccc--CCCCCC-CCCCcEEEEeCCchhh
Q 011590 275 IGQCDVALVVGARLNWLLHF--GEPPKW-SKDVKFVLVDVCKEEI 316 (482)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~--g~~~~~-~~~~~ii~id~d~~~~ 316 (482)
+++||+||++|+++.+.... .+.... ..++|+|.||+.....
T Consensus 168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~t 212 (461)
T cd02750 168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPS 212 (461)
T ss_pred HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcc
Confidence 68999999999987542111 111111 3568999999876554
No 302
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=83.29 E-value=1.5 Score=49.08 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=38.9
Q ss_pred CCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhccCChH--HHHHHHHcCcc
Q 011590 431 WGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFGFSAV--EVEVWLSCIIM 478 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~ 478 (482)
.|+||.|++.|+|.|++++ +++|++|+|||-++=... .+..+.+++|.
T Consensus 194 tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~Ld 254 (891)
T PRK09405 194 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLD 254 (891)
T ss_pred ccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCC
Confidence 5999999999999999865 678999999999875432 46666788874
No 303
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=82.83 E-value=2.4 Score=46.35 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCC---------------CC--EEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC---CC
Q 011590 205 NSDIDKAVSLLKEAK---------------KP--LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT---HP 264 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~---------------rp--vil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~---hp 264 (482)
+++++.+++.|++.+ +| +.+.|+.....+..-.+.+|+..+|.+.+... ++-+.... ..
T Consensus 74 deAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l~ 152 (649)
T cd02752 74 DEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGLA 152 (649)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHHH
Confidence 456777777776542 34 45555543322334468999999998766432 22111000 00
Q ss_pred cccchH--H--HHhhhcCCEEEEecCccCccccc--CCCCC-CCC-CCcEEEEeCCchhh
Q 011590 265 LAATAA--R--SLAIGQCDVALVVGARLNWLLHF--GEPPK-WSK-DVKFVLVDVCKEEI 316 (482)
Q Consensus 265 ~~~G~~--~--~~~l~~aDlvl~iG~~~~~~~~~--g~~~~-~~~-~~~ii~id~d~~~~ 316 (482)
..+|.. . -.-+++||+||++|+++.+...- .+... ... ++|+|.||+.....
T Consensus 153 ~~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~T 212 (649)
T cd02752 153 NTFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRT 212 (649)
T ss_pred hhcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCch
Confidence 111211 0 12368899999999987542211 11110 123 78999999866544
No 304
>PRK13936 phosphoheptose isomerase; Provisional
Probab=80.80 E-value=11 Score=34.46 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHH--HHHHHH------hCCCcEEecCchHHH----------HHHHHHH-HhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAV------QLGVRFIAFHNEQSA----------GYAASAY-GYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~------~~~i~~v~~~~E~~A----------~~~A~g~-ar~tg 75 (482)
..++.+++.|.+.+.=++||+-++.... +...+. +.++..+....+... ..+...+ +....
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 4678889999999999999998875432 333343 345555544222111 0000011 11112
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
+--++++-|..| .-+.+..+..|+..++|+|.||+...
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 222445555555 44577788889999999999999753
No 305
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=80.44 E-value=1.1 Score=41.73 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=34.2
Q ss_pred HhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEecc
Q 011590 273 LAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGD 328 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D 328 (482)
+.++++|++|+||+++............ ..++++|.||.++.... ...++.+.+|
T Consensus 163 ~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~-~~~d~~~~~~ 218 (218)
T cd01407 163 EALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPAD-RKADLVILGD 218 (218)
T ss_pred HHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCC-ccceEEEeCC
Confidence 4567799999999998754322211112 24788999999876553 1235555443
No 306
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=80.17 E-value=4.6 Score=41.59 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCC-c---ccchHHHHh
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-L---AATAARSLA 274 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp-~---~~G~~~~~~ 274 (482)
+++++.+++.|++. +...++.|... .......+.+|++.+|.|.++.......+....- . +.+ ....-
T Consensus 72 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d 149 (414)
T cd02772 72 ETALEYVAEGLSAIIKKHGADQIGALASPHS-TLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLG-MPIAE 149 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEEecCCC-CcHHHHHHHHHHHHhCCCCccCccccCccchhhhhccCCCCC-CcHHH
Confidence 35667777777653 22333444332 2234457899999999987643211110000000 0 001 11234
Q ss_pred hhcCCEEEEecCccCccccc--CCCC-CCCCCCcEEEEeCCchh
Q 011590 275 IGQCDVALVVGARLNWLLHF--GEPP-KWSKDVKFVLVDVCKEE 315 (482)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~--g~~~-~~~~~~~ii~id~d~~~ 315 (482)
++++|+||++|+++...... .+.. ....+.|+|.||+-..+
T Consensus 150 i~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 150 ISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 78899999999987532110 0110 11246899999985443
No 307
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=79.99 E-value=2.1 Score=45.10 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCCCcccchHHHHHHHhhhCC-----CCcEEEEEcchhccCChH--HHHHHHHcCccccc
Q 011590 429 GTWGTMGVGLGYCIAAAIACP-----ERLVVAVEGDSGFGFSAV--EVEVWLSCIIMISS 481 (482)
Q Consensus 429 ~~~g~mG~~l~~AiGaala~p-----~~~vi~~~GDGsf~~~~~--eL~T~~r~~l~i~~ 481 (482)
.+.|.+|.+++.|+|-|++.. +-+|+++.|||..+=... ....|-.+++.-++
T Consensus 115 v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLV 174 (632)
T KOG0523|consen 115 VATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLV 174 (632)
T ss_pred eccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEE
Confidence 356999999999999888742 468999999999875432 34445566665443
No 308
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=79.99 E-value=13 Score=33.80 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHH--HH------hCCCcEEecCchHHHH-----------HHHHHHHhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANR--AV------QLGVRFIAFHNEQSAG-----------YAASAYGYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~a--l~------~~~i~~v~~~~E~~A~-----------~~A~g~ar~tg 75 (482)
..++.|.+.|++.|-=++||+-++......-+ +. +.++..+.. .+.+.. .++.-.+..-.
T Consensus 32 ~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 110 (192)
T PRK00414 32 RAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAVGR 110 (192)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHhCC
Confidence 56788888888889999999988765433222 21 245555444 333211 11111221223
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
+--++++.|..| ..+.+.++..|+..++|+|.||+...
T Consensus 111 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 111 EGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 334666666666 56777888899999999999999753
No 309
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=79.94 E-value=1 Score=42.26 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=30.7
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhc
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~ 317 (482)
...++++|++|+||+++........+....+++++|.||.++....
T Consensus 166 ~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~ 211 (225)
T cd01411 166 IQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLD 211 (225)
T ss_pred HHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCC
Confidence 3567889999999998764332221111234789999999876553
No 310
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=79.31 E-value=17 Score=33.31 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChH--HHHHHHH------hCCCcEEecCchHHHHHHHH--------HHHh---Hh
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAV------QLGVRFIAFHNEQSAGYAAS--------AYGY---LT 74 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~------~~~i~~v~~~~E~~A~~~A~--------g~ar---~t 74 (482)
...++.+++.|.+.+-=++||+-|+... ++...|. +.+++.+....+..- ..|. =|+| ..
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~-~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVV-LTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHH-HHHHhccccHHHHHHHHHHHc
Confidence 3578888888888899999999987543 3444342 356777754333322 1111 1222 22
Q ss_pred CCc-EEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCCcc
Q 011590 75 GKP-GILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 75 gk~-~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~~~ 115 (482)
.++ -++++-|+.| .-|.+.++..|+..+.|+|.||+.....
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 222 3555555555 6678889999999999999999976443
No 311
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=78.95 E-value=8.5 Score=44.08 Aligned_cols=113 Identities=7% Similarity=-0.148 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH----HHHh
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSLA 274 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~----~~~~ 274 (482)
+++++.+++.|++ .+...++.|.+...........+|+..+|.+........+.....++..+|.. ...-
T Consensus 142 dEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~D 221 (912)
T TIGR03479 142 DEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKAHDSATSDD 221 (912)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccCccCCchhh
Confidence 4567777776654 33333333444322122234578999999764322111112222334344431 1234
Q ss_pred hhcCCEEEEecCccCcccccC--CCC-CCCCCCcEEEEeCCchhhc
Q 011590 275 IGQCDVALVVGARLNWLLHFG--EPP-KWSKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~g--~~~-~~~~~~~ii~id~d~~~~~ 317 (482)
+.+||+||++|+++....... +.. ....++|+|.||++.....
T Consensus 222 ~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA 267 (912)
T TIGR03479 222 WFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPST 267 (912)
T ss_pred hhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhh
Confidence 678999999999876432111 110 1135789999999876553
No 312
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=78.36 E-value=4 Score=44.41 Aligned_cols=110 Identities=19% Similarity=0.103 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCC---CCCCCCcccchHHHHhhhcCCEE
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL---LPDTHPLAATAARSLAIGQCDVA 281 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~---~~~~hp~~~G~~~~~~l~~aDlv 281 (482)
+++++.+++.|++.++..++.|.... .+....+.+|++.+|.+-+.....-.. .+....+.+|. ...-++++|+|
T Consensus 289 deAl~~ia~kL~~i~~va~~~~~~~~-~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~-~~~di~~ad~i 366 (603)
T TIGR01973 289 AEALAIAAEKLKASSRIGGIAGPRSS-LEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNT-TLADIEEADLV 366 (603)
T ss_pred HHHHHHHHHHHhccCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCC-CHHHHHhCCEE
Confidence 56788888888887666666665432 233346889999999764432221100 11111222231 12346789999
Q ss_pred EEecCccCcccccC--CCC-CCCCC-CcEEEEeCCchhh
Q 011590 282 LVVGARLNWLLHFG--EPP-KWSKD-VKFVLVDVCKEEI 316 (482)
Q Consensus 282 l~iG~~~~~~~~~g--~~~-~~~~~-~~ii~id~d~~~~ 316 (482)
|++|+++.+....- +.. ...++ +|+|.||+.....
T Consensus 367 l~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~t 405 (603)
T TIGR01973 367 LLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNL 405 (603)
T ss_pred EEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 99999876432111 110 11233 7999999755444
No 313
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.24 E-value=6.7 Score=40.06 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
..-..+++..|+.-.+-+.++.....|..|.++|+.|+++.++|++.+.
T Consensus 114 TTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 114 TTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred HhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 4567788888988888888888899999999999999999999999763
No 314
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=78.13 E-value=13 Score=32.42 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHHHHH--HH------HhCCCcEEecC---chHHHH----HHHHHHHh----HhCCcE
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTSLAN--RA------VQLGVRFIAFH---NEQSAG----YAASAYGY----LTGKPG 78 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~--al------~~~~i~~v~~~---~E~~A~----~~A~g~ar----~tgk~~ 78 (482)
+.+++.|.+.+.=++||+-++......- .+ .+.++..+... ++..+. ...+-+.+ ..++--
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 5688999999999999998876433222 11 22355544432 222111 01111222 123445
Q ss_pred EEEEcCChhhH-hhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 79 ILLTVSGPGCV-HGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 79 v~~~t~GpG~~-N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
++++-|.+|-+ +.+..+..|+..++|++.||+...
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 77777777755 455677779999999999999653
No 315
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=78.09 E-value=6.8 Score=47.80 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=71.7
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhh--CCCcEEEEeCCCCccc-CCC----------------CCCCC
Q 011590 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMI--NTWPIVMISGSCDQKD-FGR----------------GDFQE 124 (482)
Q Consensus 64 ~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~--~~~Pvl~i~g~~~~~~-~~~----------------~~~q~ 124 (482)
.-+|.|.+.+.+|+.+|++--| |+...++.|..|.. .++|+++|.-.-.... ... ...+.
T Consensus 767 lpaAIGaala~~r~Vv~i~GDG-sF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~ 845 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCVVGDI-SFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHD 845 (1655)
T ss_pred HHHHHHHhhcCCCCEEEEEehH-HHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCC
Confidence 4456777766678887776544 68888899999877 4899988876554310 000 00123
Q ss_pred cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 125 ~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.|...+.+.+.-...++++++++.+.+++|+ .. .||+.|+|..|
T Consensus 846 ~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~----~~-~~p~lIEV~t~ 889 (1655)
T PLN02980 846 ISIENLCLAHGVRHLHVGTKSELEDALFTSQ----VE-QMDCVVEVESS 889 (1655)
T ss_pred CCHHHHHHHcCCceeecCCHHHHHHHHHHhh----cc-CCCEEEEEecC
Confidence 5666777777778889998888777666655 33 48999999997
No 316
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=77.85 E-value=19 Score=32.83 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=46.2
Q ss_pred EEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec-CCcCcHHHHHHH
Q 011590 78 GILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA-KDITEVPKCVAQ 153 (482)
Q Consensus 78 ~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~-~~~~~~~~~l~~ 153 (482)
..+++..|=|..+ ..-++..|-....|+++|.-+......+. .. +....++.. .|...- .+..++ +.+.+
T Consensus 98 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~--~~--~~~~~~~a~-G~~~~~~vdG~d~-~~l~~ 171 (195)
T cd02007 98 RKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN--VG--TPGNLFEEL-GFRYIGPVDGHNI-EALIK 171 (195)
T ss_pred CeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC--CC--CHHHHHHhc-CCCccceECCCCH-HHHHH
Confidence 3344444655553 34677777777999999886653322111 01 344455542 333321 233333 33456
Q ss_pred HHHHhhcCCCceEEEEcC
Q 011590 154 VLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 154 A~~~a~~~~~gPv~l~iP 171 (482)
|++.|... .+|+.|.+-
T Consensus 172 a~~~a~~~-~~P~~I~~~ 188 (195)
T cd02007 172 VLKEVKDL-KGPVLLHVV 188 (195)
T ss_pred HHHHHHhC-CCCEEEEEE
Confidence 66666654 489988753
No 317
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=77.69 E-value=9.1 Score=32.75 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcCh--HHHHHHHHh----C--CCcEEecCchH-HHHHHH----HHHHh-----HhCC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPV--TSLANRAVQ----L--GVRFIAFHNEQ-SAGYAA----SAYGY-----LTGK 76 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~--~~l~~al~~----~--~i~~v~~~~E~-~A~~~A----~g~ar-----~tgk 76 (482)
..++.+++.+.+-|.=++||.-|+.. .++...+.. . .+..+...+.. .+.... .+|++ ...+
T Consensus 23 ~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (138)
T PF13580_consen 23 KAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIR 102 (138)
T ss_dssp HHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCC
Confidence 57899999999999999999977643 344433321 1 23344443321 011111 12322 1244
Q ss_pred cE-EEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeC
Q 011590 77 PG-ILLTVSGPG-CVHGLAGLSNGMINTWPIVMISG 110 (482)
Q Consensus 77 ~~-v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g 110 (482)
|+ ++++.|..| ..|.+-++..|+.-+.++|.|||
T Consensus 103 ~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 103 PGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 43 444444443 67888899999999999999986
No 318
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=77.51 E-value=1.8 Score=46.40 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=29.0
Q ss_pred CCcccchHHHHHHHhhhCCCCcEEEEEcch
Q 011590 431 WGTMGVGLGYCIAAAIACPERLVVAVEGDS 460 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDG 460 (482)
.|-+||++.-|.||++-+||..+.+++|||
T Consensus 152 GGeLGy~l~ha~gAa~d~Pdli~~~vvGDG 181 (793)
T COG3957 152 GGELGYALSHAYGAAFDNPDLIVACVVGDG 181 (793)
T ss_pred CcchhHHHHHHHHhhcCCCCcEEEEEeccc
Confidence 589999999999999999999999999999
No 319
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=77.36 E-value=1.5 Score=46.55 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=36.3
Q ss_pred CCcccchHHHHHHHhhhC---------C-----CCcEEEEEcchhccCChH-H-HHHHHHcCcc
Q 011590 431 WGTMGVGLGYCIAAAIAC---------P-----ERLVVAVEGDSGFGFSAV-E-VEVWLSCIIM 478 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~---------p-----~~~vi~~~GDGsf~~~~~-e-L~T~~r~~l~ 478 (482)
.|.+|-|++.|+|-|||. | |-.+.+|+|||.+|=... | ..-|-.++|.
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~ 178 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLG 178 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCC
Confidence 599999999999999984 2 358999999999987654 3 3333355554
No 320
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=77.27 E-value=1.3 Score=42.56 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=52.6
Q ss_pred HhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc----c-CCceeEeccHHHHHHHHHHhhhcC
Q 011590 273 LAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL----R-KPHLGLVGDAKKVLEMINKEIKDE 343 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~----~-~~~~~i~~D~~~~l~~L~~~l~~~ 343 (482)
+.++.+|.||-+-+-+....+.+ .++...|.|++|++|.-..+ . ...+.++.|...||..|..++++.
T Consensus 334 ~~l~g~dmvlMlstMLHSIa~GN---llPs~VKtiCVDiNPavVTKL~DRGs~qavgvVTDVGlFlplL~~elkkl 406 (415)
T COG1915 334 EHLQGADMVLMLSTMLHSIAVGN---LLPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRELKKL 406 (415)
T ss_pred HHhccCccHHHHHHHHHHHhhcC---cchhhceEEEEecChHHheecccCCccceeEEEeehhHhHHHHHHHHHHh
Confidence 56889999999987776554332 34566899999999987642 2 237899999999999999998754
No 321
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=75.98 E-value=0.66 Score=44.57 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChHH-HH-HHHHhCCCcEEe----------cCchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVTS-LA-NRAVQLGVRFIA----------FHNEQSAGYAASAYGYLTGKPGILLTVS 84 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~-l~-~al~~~~i~~v~----------~~~E~~A~~~A~g~ar~tgk~~v~~~t~ 84 (482)
..+.++.+.+.|.+.|.-.=++..+. |+ +.|. ...++|. ..+|..-+.+=.||--..|.+..++.|+
T Consensus 39 vnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~-~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl~HT 117 (270)
T cd08769 39 LNAVLEELFESGFEEIVVADSHGRMDNIDYEELD-PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIMDHT 117 (270)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC-cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCccccc
Confidence 45678888999999998887754332 22 2222 3445543 2233222222345544345422344454
Q ss_pred Chhh------------HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHH
Q 011590 85 GPGC------------VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVA 152 (482)
Q Consensus 85 GpG~------------~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~ 152 (482)
-.|. +-..-.-+-|-.-++||++++|+.......+..+..+.....-+.+.+++..-.+|+.+.+.|+
T Consensus 118 ~s~~~~~~v~iNG~~~gE~~lNa~~Ag~~gVPV~lVsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~ 197 (270)
T cd08769 118 YSGSTIYNIWINGKEMNETLINAAYAGEFGVPVVLVAGDSELEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELR 197 (270)
T ss_pred cccCceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHH
Confidence 3332 2222333445567999999999863332222222222333344556778888888999999999
Q ss_pred HHHHHhhc
Q 011590 153 QVLERAVS 160 (482)
Q Consensus 153 ~A~~~a~~ 160 (482)
++.+.|+.
T Consensus 198 ~aa~~Al~ 205 (270)
T cd08769 198 EAVKEALE 205 (270)
T ss_pred HHHHHHHH
Confidence 99988874
No 322
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=75.95 E-value=18 Score=38.86 Aligned_cols=158 Identities=12% Similarity=0.034 Sum_probs=99.1
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCC---cChHHHHHH--HH--hCCCcEE-ecCchHHHHHHHHHHHhHhCCcEEEEE
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANR--AV--QLGVRFI-AFHNEQSAGYAASAYGYLTGKPGILLT 82 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG---~~~~~l~~a--l~--~~~i~~v-~~~~E~~A~~~A~g~ar~tgk~~v~~~ 82 (482)
.+++..+....+.|...-.+.+=|... +....+-.. +. +..-++| .-.-|.+.+.++-|.+.-.| .-..-.
T Consensus 354 ~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg-~~pygg 432 (663)
T COG0021 354 IATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGG-FIPYGG 432 (663)
T ss_pred cchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcC-ceeecc
Confidence 567777888888887776665555443 222222221 11 1112222 33459999999999998766 222223
Q ss_pred cCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 83 VSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 83 t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
|...=.--+-+++--|...++|++++-.-- +-..|. ..||-++|+..+|.+-....- +|.+..+. ..|++.|..
T Consensus 433 TFlvFsdY~r~AiRlaALm~l~~~~V~THD-SIgvGEDGPTHqPiEqLa~LRaiPN~~V~--RPaD~~Et-~~aw~~Al~ 508 (663)
T COG0021 433 TFLVFSDYARPAVRLAALMGLPVIYVFTHD-SIGVGEDGPTHQPVEQLASLRAIPNLSVI--RPADANET-AAAWKYALE 508 (663)
T ss_pred eehhhHhhhhHHHHHHHhcCCCeEEEEecC-ceecCCCCCCCCcHHHHHHhhccCCceeE--ecCChHHH-HHHHHHHHh
Confidence 333323445589999999999999987532 222222 358889999999998664432 33444443 688888888
Q ss_pred CCCceEEEEcCcc
Q 011590 161 GRPGGCYLDLPTD 173 (482)
Q Consensus 161 ~~~gPv~l~iP~d 173 (482)
...||..|.+...
T Consensus 509 ~~~gPt~LiltRQ 521 (663)
T COG0021 509 RKDGPTALILTRQ 521 (663)
T ss_pred cCCCCeEEEEecC
Confidence 7779999988763
No 323
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=75.74 E-value=1.4 Score=41.24 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCC--CCCCcEEEEeCCchhh
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW--SKDVKFVLVDVCKEEI 316 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~--~~~~~ii~id~d~~~~ 316 (482)
+.+.+++||++|+||+++..+.... .... ..++++|.||.++...
T Consensus 165 a~~~~~~~Dl~lvvGTSl~V~p~~~-l~~~a~~~g~~~i~iN~~~~~~ 211 (222)
T cd01413 165 AIEAAKEADLFIVLGSSLVVYPANL-LPLIAKENGAKLVIVNADETPF 211 (222)
T ss_pred HHHHHhcCCEEEEEccCCEeccHhH-HHHHHHHcCCeEEEEcCCCCCC
Confidence 3456788999999999987543222 1111 3568899999987543
No 324
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=72.61 E-value=12 Score=40.26 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=69.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC----------CC---CCC-CCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------GR---GDF-QELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~~---~~~-q~~d~ 127 (482)
+.-+|.|.+.+. +|+.++++--| |+.=...-|..|...++|++++.-+-..... +. ..+ ...|.
T Consensus 423 glpaaiGa~lA~p~~~Vv~i~GDG-~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~ 501 (566)
T PRK07282 423 GIPAAIGAKIANPDKEVILFVGDG-GFQMTNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDF 501 (566)
T ss_pred hhhHhheeheecCCCcEEEEEcch-hhhccHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCH
Confidence 444566666654 57777777555 3444456899999999999999876542210 11 112 23577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+.+.+..+..++++++++.+.++ ++ .. .+|+.|++..|-
T Consensus 502 ~~lA~a~G~~~~~v~~~~el~~al~-~~----~~-~~p~lIeV~v~~ 542 (566)
T PRK07282 502 QLMAQAYGIKHYKFDNPETLAQDLE-VI----TE-DVPMLIEVDISR 542 (566)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHH-Hh----cC-CCCEEEEEEeCC
Confidence 7788888888899998888766663 22 22 489999998763
No 325
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=72.59 E-value=16 Score=36.96 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhC--CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCc---ccchHHHHhhhcCC
Q 011590 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL---AATAARSLAIGQCD 279 (482)
Q Consensus 205 ~~~~~~~~~~L~~a--~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~---~~G~~~~~~l~~aD 279 (482)
+++++.+++.|.+. ++-.+++|... ..+..-.+.+|++.+|...+.........+-.+.+ +.....-.-+++||
T Consensus 72 ~eAl~~ia~~l~~~~~~~i~~i~g~~~-t~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad 150 (366)
T cd02774 72 KTAFKFLNKFILLKKFSKLNFIIGSKI-DLETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSD 150 (366)
T ss_pred HHHHHHHHHHHhhcCcccEEEEECCCC-CHHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCC
Confidence 35666777777654 34556666643 23455568999999999877643221111111111 11111123477999
Q ss_pred EEEEecCccCcccccC--CC-CCC-CCCCcEEEEeCCc
Q 011590 280 VALVVGARLNWLLHFG--EP-PKW-SKDVKFVLVDVCK 313 (482)
Q Consensus 280 lvl~iG~~~~~~~~~g--~~-~~~-~~~~~ii~id~d~ 313 (482)
+||+||+++.+-.+-- +. ..+ ..+.+++.|++..
T Consensus 151 ~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 151 LCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred EEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999999876421110 11 011 3467899888755
No 326
>PRK13937 phosphoheptose isomerase; Provisional
Probab=72.29 E-value=22 Score=32.18 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHH--HHHHH------HhCCCcEEecC-chHHHHH----------HHHHHHhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRA------VQLGVRFIAFH-NEQSAGY----------AASAYGYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al------~~~~i~~v~~~-~E~~A~~----------~A~g~ar~tg 75 (482)
..++.+++.|++.+-=++||.-++.... +...+ .+.++..+... +...... ++.-.+....
T Consensus 26 ~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~ 105 (188)
T PRK13937 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALGR 105 (188)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhCC
Confidence 4788999999999999999997765432 21122 23456555432 2211111 1111111113
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCCc
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
+--++++-|.+| .-+.+.++..|+..++|++.||+....
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 334566666666 455667888899999999999997643
No 327
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=70.53 E-value=9.8 Score=42.03 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhC--CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCcccchHHHHhhhcCCE
Q 011590 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAATAARSLAIGQCDV 280 (482)
Q Consensus 205 ~~~~~~~~~~L~~a--~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~~~G~~~~~~l~~aDl 280 (482)
+++++.+++.|++. ++..++.|.... .+..-.+.+|++.+|.+.+.+......+.. ...+.++. .-.-+++||+
T Consensus 290 dEAl~~iA~kL~~~~~~~ia~i~g~~~~-~E~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~-si~dIe~AD~ 367 (687)
T PRK09130 290 DEAFAAIAAKIKGTPGEKIAAIAGDLAD-VESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNT-TIAGIEEADA 367 (687)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCC-HHHHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCC-CHHHHHhCCE
Confidence 56788888888875 456777777653 244457899999999887754321101110 00111121 1123689999
Q ss_pred EEEecCccCcccccC--CC-CCCCCC-CcEEEEeCCc
Q 011590 281 ALVVGARLNWLLHFG--EP-PKWSKD-VKFVLVDVCK 313 (482)
Q Consensus 281 vl~iG~~~~~~~~~g--~~-~~~~~~-~~ii~id~d~ 313 (482)
||++|+++.+..+-- +. ..+..+ .+++.||+..
T Consensus 368 IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 368 ILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred EEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 999999985321110 11 112334 5999998853
No 328
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=70.20 E-value=14 Score=36.62 Aligned_cols=110 Identities=16% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCcccc----ccHHHHHHHHHHhC----CcEee---CCCCCC--------------
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYA----RAEGELKKLVESTG----IPFLP---TPMGKG-------------- 257 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~----~~~~~l~~lae~~g----~pv~~---t~~~~g-------------- 257 (482)
.+.+.++++++++++|+-.+|++|-|...| +..+....|.+.|+ +-++. -.+-+|
T Consensus 230 vp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~ 309 (429)
T COG1029 230 VPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYPFA 309 (429)
T ss_pred CCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCcee
Confidence 345778999999999999999999999776 33455556665555 21111 011111
Q ss_pred -CCCCCCCcc-cch-HHHHhhh--cCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCc
Q 011590 258 -LLPDTHPLA-ATA-ARSLAIG--QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK 313 (482)
Q Consensus 258 -~~~~~hp~~-~G~-~~~~~l~--~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~ 313 (482)
-|.+-+|.| -|. ...++|+ ++|-.++||+++..-.+.--... -...++|+||+-+
T Consensus 310 vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~-l~eIPvI~iDp~~ 369 (429)
T COG1029 310 VDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEH-LAEIPVICIDPHP 369 (429)
T ss_pred eecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHH-hhcCCEEEecCCC
Confidence 122222222 111 2446664 79999999998852111000011 2356799998855
No 329
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.82 E-value=13 Score=34.02 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.-+.+++..+...++.+-++-...-|.++.++|+.+|+.+|+|++.
T Consensus 16 Tt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 16 TTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp HHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred hHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 3456666555443444555545666689999999999999999986
No 330
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=68.61 E-value=25 Score=35.54 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhHhCCcEEEEEcCChhhHh---hHHHHHHhhhCCCcEEEEeCCCCcccCCCC-CCCC-cCHh-hhhccc
Q 011590 61 QSAGYAASAYGYLTGKPGILLTVSGPGCVH---GLAGLSNGMINTWPIVMISGSCDQKDFGRG-DFQE-LDQV-EAVKPF 134 (482)
Q Consensus 61 ~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N---~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~-~d~~-~~~~~~ 134 (482)
-.|+.+|.+.-+ .|+..++++..|=|++| ..-++--|..-+.|+|+|.-+.... .+.. .-|. .+.. .-...+
T Consensus 145 p~A~G~A~A~k~-~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~~~~~~~~~~~~~~~~~~ 222 (362)
T PLN02269 145 PLGAGLAFAQKY-NKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTAEWRAAKSPAYYKRGDYV 222 (362)
T ss_pred cHHHHHHHHHHH-hCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCchhhhccchHHHHhhcCC
Confidence 344455544433 34556677776766554 4456767788899999998764322 1110 0011 1111 000111
Q ss_pred cceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 135 ~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
......=.++.++.+.+.+|...+.. + ||+.|++
T Consensus 223 p~~~VDG~D~~av~~a~~~A~~~aR~-~-gP~lIe~ 256 (362)
T PLN02269 223 PGLKVDGMDVLAVKQACKFAKEHALS-N-GPIVLEM 256 (362)
T ss_pred CeEEECCCCHHHHHHHHHHHHHHHHh-C-CCEEEEE
Confidence 11222334566778888888888877 4 9999997
No 331
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=67.89 E-value=3.4 Score=43.85 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH---HHHhh
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA---RSLAI 275 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~---~~~~l 275 (482)
+++++.+++.|++. +...++.+.+...........+|++.+|.+-+......+..-.-+...+|.. ..+-+
T Consensus 76 deAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~~~~~~~~d~ 155 (501)
T cd02766 76 DEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGASLGNDPEDM 155 (501)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCCCCCCCHHHH
Confidence 35667777777653 3344444444322222222368888888765421100000000001112211 12356
Q ss_pred hcCCEEEEecCccCcccccC--CC-CCCCCCCcEEEEeCCchhh
Q 011590 276 GQCDVALVVGARLNWLLHFG--EP-PKWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 276 ~~aDlvl~iG~~~~~~~~~g--~~-~~~~~~~~ii~id~d~~~~ 316 (482)
+++|+||++|+++.+..... +. ..-..++|+|.||+.....
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 89999999999876532211 00 0013578999999866544
No 332
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=67.63 E-value=5.7 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 218 a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
.+|.++++|.|...+-..+.+.+++++.|+++-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~ 35 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK 35 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE
Confidence 478899999999877777899999999999864
No 333
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=67.26 E-value=4 Score=37.98 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=30.6
Q ss_pred HhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhc
Q 011590 273 LAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~ 317 (482)
..+.++|++|++|+++............ ..+.+++.|+.++....
T Consensus 165 ~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~ 210 (222)
T cd00296 165 EALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPAD 210 (222)
T ss_pred HHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCC
Confidence 4456799999999999864332211112 35788999999886654
No 334
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=66.97 E-value=5.9 Score=33.50 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
..+++.-.+..+.|-+.+-|.|++-.|. ...+.+.++|+++++|++.|...
T Consensus 64 ~l~~~~r~~~l~~l~~~~~P~iIvt~~~---~~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 64 SLDEEERKERLEKLFSYNPPCIIVTRGL---EPPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp CS-HHHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred HCCHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEcCCc
Confidence 3456666777888888999999998886 56788999999999999988753
No 335
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=66.90 E-value=16 Score=41.10 Aligned_cols=136 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC---CCcccchHHHHhhh
Q 011590 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT---HPLAATAARSLAIG 276 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~---hp~~~G~~~~~~l~ 276 (482)
+++++.+++.|++.+ +-+.+.+++-........+.+|++.+|.+.+............ .-...-.....-+.
T Consensus 290 deAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~~~~~~~g~~~~~~~~~Di~ 369 (776)
T PRK09129 290 ETALEYVAEGLKGIIEDHGADQIGALASPHSTLEELYLLQKLARGLGSGNIDHRLRQQDFRDDAAAPGAPWLGMPIAELS 369 (776)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCCHHHHHHHHHHHHHhCCCccccccCCccccchhhhhcccccCCCHHHHH
Q ss_pred cCCEEEEecCccCcccccCCCCCC---CCCCcEEEEeCCchhh-cccCCceeEe-ccHHHHHHHHHHhh
Q 011590 277 QCDVALVVGARLNWLLHFGEPPKW---SKDVKFVLVDVCKEEI-ELRKPHLGLV-GDAKKVLEMINKEI 340 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~g~~~~~---~~~~~ii~id~d~~~~-~~~~~~~~i~-~D~~~~l~~L~~~l 340 (482)
+||+||++|+++............ ..+.|+|.||+-..+. ....+.+.+. +|...+|..|...+
T Consensus 370 ~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~~~~~~~~~~~~p~~~~~~la~l~~~i 438 (776)
T PRK09129 370 NLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDFLFPVAQRIIVAPSAWADALAGVAAAV 438 (776)
T ss_pred hCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccccccccccCccCChHHHHHHHHHHHHHH
No 336
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=66.71 E-value=22 Score=29.45 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCcc-CcccccCCCCCCCCCCcEEEEeC
Q 011590 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL-NWLLHFGEPPKWSKDVKFVLVDV 311 (482)
Q Consensus 233 ~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~-~~~~~~g~~~~~~~~~~ii~id~ 311 (482)
-+.+.|++-|++.|+.+..+..|..-... + ...+-+++||+||.+|... .+.. .| .+.+++.+++
T Consensus 20 lAAeaL~kAA~~~G~~i~VE~qg~~g~~~--~-----lt~~~i~~Ad~VIia~d~~~~~~~------rF-~gk~v~~~s~ 85 (114)
T PRK10427 20 MAAERLEKLCQLEKWGVKIETQGALGTEN--R-----LTDEDIRRADVVLLITDIELAGAE------RF-EHCRYVQCSI 85 (114)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCcCC--C-----CCHHHHHhCCEEEEEecCCCCchh------hh-CCCeEEEecH
Confidence 55688999999999998866665421111 1 2236688999999999765 2221 12 2447777766
Q ss_pred CchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 312 CKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 312 d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
+. ...|++.+|++..+.+.
T Consensus 86 ~~-----------ai~d~~~vl~~a~~~~~ 104 (114)
T PRK10427 86 YA-----------FLREPQRVMSAVRKVLS 104 (114)
T ss_pred HH-----------HHHHHHHHHHHHHHHHh
Confidence 43 23466777777666554
No 337
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=65.40 E-value=8.5 Score=42.42 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHHHH-hCCcEeeCCCCCCCCCC--CCCcccch----HH
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKGLLPD--THPLAATA----AR 271 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~lae~-~g~pv~~t~~~~g~~~~--~hp~~~G~----~~ 271 (482)
+++++.+++.|++ .++..++.|.+.. ......+.+|++. +|.+-+.+...-+..+. .+...+|. ..
T Consensus 71 deAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~-~e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 149 (671)
T TIGR01591 71 DEAISYIAEKLKEIKEKYGPDSIGFIGSSRGT-NEENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIGAMSNT 149 (671)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCcc-cHHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCCCCCCC
Confidence 3566777777763 4456667766543 2334567899997 99876543321110111 01111221 11
Q ss_pred HHhhhcCCEEEEecCccCccccc--CCC-CCCCCCCcEEEEeCCchhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHF--GEP-PKWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~--g~~-~~~~~~~~ii~id~d~~~~ 316 (482)
..-+++||+||++|+++...... .+. ....+++|+|.||+.....
T Consensus 150 ~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~t 197 (671)
T TIGR01591 150 ISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTET 197 (671)
T ss_pred HHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 23478899999999987542111 010 0113578999998866544
No 338
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=65.34 E-value=1.8 Score=41.53 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChHH-HHHHHHhCCCcEEecC----------chHHHHHHHHH-HHhHhCCcEEEEEcC
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFH----------NEQSAGYAASA-YGYLTGKPGILLTVS 84 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~-l~~al~~~~i~~v~~~----------~E~~A~~~A~g-~ar~tgk~~v~~~t~ 84 (482)
..+.++-+.+.|.+.|..+=++..+. |+-..-+...++|.-. +|..-+.+=.| ++++ |.+..++.|+
T Consensus 39 vnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~a-g~~~gvL~HT 117 (266)
T cd08663 39 VNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLDPRARLISGSPKPLGMMEGLDEGFDAALFVGYHARA-GTPPGVLSHT 117 (266)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCccEEEEecCCCCchhhhccccCcCEEEEEecCCCc-CCCCCccccc
Confidence 34667888899999999887764432 2222122345555221 33333333345 3444 3323334444
Q ss_pred Chhh--H----------hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHH
Q 011590 85 GPGC--V----------HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVA 152 (482)
Q Consensus 85 GpG~--~----------N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~ 152 (482)
-.|. . -..-.-+-|-.-++||+++||+.......+.-..++.....-+.+..++..--+|+++.+.|+
T Consensus 118 ~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~ 197 (266)
T cd08663 118 YSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIR 197 (266)
T ss_pred ccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHH
Confidence 2222 1 122233445567999999999875443222222222233344556778888889999999999
Q ss_pred HHHHHhh
Q 011590 153 QVLERAV 159 (482)
Q Consensus 153 ~A~~~a~ 159 (482)
++.+.|+
T Consensus 198 ~~a~~Al 204 (266)
T cd08663 198 EAAAEAV 204 (266)
T ss_pred HHHHHHH
Confidence 9998886
No 339
>PRK13938 phosphoheptose isomerase; Provisional
Probab=65.07 E-value=58 Score=29.79 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHH--HHHH------hCCCcEEecCchHHHHHHHHH--------HHh----Hh
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLA--NRAV------QLGVRFIAFHNEQSAGYAASA--------YGY----LT 74 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~--~al~------~~~i~~v~~~~E~~A~~~A~g--------~ar----~t 74 (482)
..++.+++.|++.|-=++||+-++...... ..|. .+.+..+....+. +-..|.+ |++ .-
T Consensus 33 ~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~-~~~~a~~nd~~~~~~~~~~~~~~~ 111 (196)
T PRK13938 33 AIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANS-SHLTAVANDYDYDTVFARALEGSA 111 (196)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCCh-HHHHHhhccccHHHHHHHHHHhcC
Confidence 578888999999999999999887654333 2232 1133333332222 1221111 112 12
Q ss_pred CCcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 75 GKPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 75 gk~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
++--++++.|..| .-+.+.++..|+..++|+|.||+...
T Consensus 112 ~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 112 RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 2233555555555 66777888999999999999999764
No 340
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.81 E-value=9 Score=41.36 Aligned_cols=109 Identities=10% Similarity=0.057 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhC--CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC--CCcccch----HHHHhhh
Q 011590 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT--HPLAATA----ARSLAIG 276 (482)
Q Consensus 205 ~~~~~~~~~~L~~a--~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~--hp~~~G~----~~~~~l~ 276 (482)
+++++.+++.|++. ++.+++.++... .++.-...+|+..+|.+-+.....-+-.+.. .+..+|. ....-+.
T Consensus 84 DEAl~~IA~kL~~~~~~~~~~y~sg~~s-nE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~ 162 (574)
T cd02767 84 DEAFAEIAARLRALDPDRAAFYTSGRAS-NEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDFE 162 (574)
T ss_pred HHHHHHHHHHHhhhCCCcEEEEecCCCc-cHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCCCCCCHHHHh
Confidence 46777788888775 444454443321 2233356789999998754322110000000 0111221 1123467
Q ss_pred cCCEEEEecCccCccccc--CCCCC-CCCCCcEEEEeCCch
Q 011590 277 QCDVALVVGARLNWLLHF--GEPPK-WSKDVKFVLVDVCKE 314 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~--g~~~~-~~~~~~ii~id~d~~ 314 (482)
+||+||++|.++...... .+... -..++|+|.||+...
T Consensus 163 ~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 163 HTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred cCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 899999999987542110 01100 135789999998653
No 341
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=64.41 E-value=8.7 Score=30.68 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 220 rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.++++|.|...|-..+.+.++++..|+++-
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~ 31 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAE 31 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceE
Confidence 4689999999888778899999999999863
No 342
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.26 E-value=13 Score=36.82 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
..-+.+++..+++..+.|+++-+..=|+++.++|..++|++|++|+..
T Consensus 153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 456889999999888888888888888999999999999999999974
No 343
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.15 E-value=12 Score=40.82 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCC----CCEEEE--cCCccc---cccHHHHHHHHHHhCCcEeeC-CCCCCCCCCCCCcccchHH---
Q 011590 205 NSDIDKAVSLLKEAK----KPLIVF--GKGAAY---ARAEGELKKLVESTGIPFLPT-PMGKGLLPDTHPLAATAAR--- 271 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~----rpvil~--G~g~~~---~~~~~~l~~lae~~g~pv~~t-~~~~g~~~~~hp~~~G~~~--- 271 (482)
+++++.+++.|++.+ .-.|+. |++... ......+.+|+..+|.++.+. ...-+..-.-++..+|...
T Consensus 79 DEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 158 (609)
T cd02751 79 DEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSDEVYE 158 (609)
T ss_pred HHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccchhcc
Confidence 456777777776521 123333 222110 123345788998888644211 0000000001122333221
Q ss_pred -----HHhhhcCCEEEEecCccCcccccCC----------CC-CCCCCCcEEEEeCCchhhc
Q 011590 272 -----SLAIGQCDVALVVGARLNWLLHFGE----------PP-KWSKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 272 -----~~~l~~aDlvl~iG~~~~~~~~~g~----------~~-~~~~~~~ii~id~d~~~~~ 317 (482)
.+..++||+||++|+++.+.....+ .. .-..++|+|.||+......
T Consensus 159 ~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta 220 (609)
T cd02751 159 QGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTA 220 (609)
T ss_pred CCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccc
Confidence 2233359999999998764332111 00 0135789999999766554
No 344
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=63.42 E-value=7.3 Score=30.31 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=36.2
Q ss_pred CCEEEEcCCccccccH-HHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEe
Q 011590 220 KPLIVFGKGAAYARAE-GELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (482)
Q Consensus 220 rpvil~G~g~~~~~~~-~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (482)
|.++++|.|...|-.. ..+++.+++.|+.+........ .......++|+||+-
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~------------~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSIL------------EVEEIADDADLILLT 54 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETT------------THHHHHTT-SEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEeccc------------ccccccCCCcEEEEc
Confidence 4689999999877555 8899999999977654332210 123455679998765
No 345
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=63.12 E-value=43 Score=26.18 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCcc-CcccccCCCCCCCCCCcEEEEeCC
Q 011590 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL-NWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 234 ~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~-~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
+.+.|++.|+++|+-+-....|..-+.. + ...+-+.+||+||++|... .... .| .+.++++++++
T Consensus 2 AAeaL~~aA~~~G~~i~VEtqg~~g~~~--~-----lt~~~i~~Ad~VIia~d~~i~~~~------rf-~gk~v~~~s~~ 67 (88)
T PRK10474 2 AAEALESAAKAKGWEVKVETQGSIGLEN--E-----LTAEDVASADMVILTKDIGIKFEE------RF-AGKTIVRVNIS 67 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcCC--C-----CCHHHHHhCCEEEEEecCCCcchh------cc-CCCceEEecHH
Confidence 4678999999999998876665421111 1 2236688999999999765 2221 12 24477766664
Q ss_pred chhhcccCCceeEeccHHHHHHHHHHhh
Q 011590 313 KEEIELRKPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (482)
. ...|+..++++..+.+
T Consensus 68 ~-----------ai~~~~~vl~~a~~~~ 84 (88)
T PRK10474 68 D-----------AVKRADAIMSKIEAHL 84 (88)
T ss_pred H-----------HHHCHHHHHHHHHHHH
Confidence 3 2245566666554443
No 346
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=63.08 E-value=11 Score=37.88 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCc---ccch--HHHHh
Q 011590 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL---AATA--ARSLA 274 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~---~~G~--~~~~~ 274 (482)
+++++.+++.|++.+ +.+.+.++........-.+.+|+..+|.+.+.+...-+..+....+ ..+. ....-
T Consensus 74 deAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 153 (374)
T cd00368 74 DEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGGGAPTNTLAD 153 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCCCCCCCCHHH
Confidence 456777777777653 4555544433222333445668888888766543322211111100 0010 11133
Q ss_pred hhcCCEEEEecCccCccccc--CCC-CCCCCCCcEEEEeCCchhh
Q 011590 275 IGQCDVALVVGARLNWLLHF--GEP-PKWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~--g~~-~~~~~~~~ii~id~d~~~~ 316 (482)
+++||+||.+|+++...... .+. ....++.|+|.||+.....
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t 198 (374)
T cd00368 154 IENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTET 198 (374)
T ss_pred HhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcc
Confidence 56999999999987532111 000 1113578999999976543
No 347
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=63.04 E-value=15 Score=38.54 Aligned_cols=84 Identities=26% Similarity=0.277 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHH-hCCcEeeCCCCCCCCCCCCCcccch--HHHHhhhcCCEE
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKGLLPDTHPLAATA--ARSLAIGQCDVA 281 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~-~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l~~aDlv 281 (482)
+++++.+++.|++.+.-+.+.|++.........+.+|++. +|.+-+... ....+...... .+. ....-++++|+|
T Consensus 72 deAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~~~~~-~~~~~~~~~di~~ad~i 149 (472)
T cd02771 72 NEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAEILRN-GPIYIPSLRDIESADAV 149 (472)
T ss_pred HHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhhhhcc-cCCCCCCHHHHHhCCEE
Confidence 4678888888888763344454443222333457888875 665543211 11111000000 011 112346799999
Q ss_pred EEecCccCc
Q 011590 282 LVVGARLNW 290 (482)
Q Consensus 282 l~iG~~~~~ 290 (482)
|++|+++..
T Consensus 150 l~~G~n~~~ 158 (472)
T cd02771 150 LVLGEDLTQ 158 (472)
T ss_pred EEEeCCccc
Confidence 999998754
No 348
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=62.63 E-value=71 Score=28.35 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHH--HHHH------hCCCcEEecC---chHHHHHHHHHH--------HhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLA--NRAV------QLGVRFIAFH---NEQSAGYAASAY--------GYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~--~al~------~~~i~~v~~~---~E~~A~~~A~g~--------ar~tg 75 (482)
..++.|.+.+.+.+-=++||.-++...... ..|. +.++..+... +|..+..--.++ +..-.
T Consensus 21 ~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (177)
T cd05006 21 QAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQ 100 (177)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCC
Confidence 456666676666776688888766544322 2232 1245554433 222221100111 11123
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
+--++++.|..| .-+.+.++..|+..++|+|.||+...
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 333444455444 45888899999999999999998753
No 349
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=62.31 E-value=40 Score=33.81 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccc----cHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH---HHHhh
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR----AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA---RSLAI 275 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~----~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~---~~~~l 275 (482)
.+.+.++++++.+.++++++++.|.+..+.. ....+..|+..+|.- ...|.+.+...+|++.-.. ..+++
T Consensus 228 ~~~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~~~~~~~~~al 304 (374)
T cd00368 228 VPAETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSAPDANRVRAAL 304 (374)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcCCCHHHHHHHH
Confidence 3567799999999999999999998875432 233345555555441 1223445555666554332 23578
Q ss_pred hcCCEEEEecCccCc
Q 011590 276 GQCDVALVVGARLNW 290 (482)
Q Consensus 276 ~~aDlvl~iG~~~~~ 290 (482)
++.|++++++...++
T Consensus 305 ~~~~~~V~~d~~~~e 319 (374)
T cd00368 305 KKLDFVVVIDIFMTE 319 (374)
T ss_pred hCCCeEEEEecCCCc
Confidence 899999999877764
No 350
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=61.56 E-value=2.5 Score=40.49 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChH-HHHHHHHhCCCcEEecC----------chHHHHHHHHH-HHhHhCCcEEEEEcC
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVT-SLANRAVQLGVRFIAFH----------NEQSAGYAASA-YGYLTGKPGILLTVS 84 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~i~~v~~~----------~E~~A~~~A~g-~ar~tgk~~v~~~t~ 84 (482)
..+.++-+.+.|.+.|..+=++..+ .|+-...++..++|.-. +|..-+.+=.| ++++..++++ +.|+
T Consensus 39 vnAaiega~~aGa~eVvVnDsHg~~~Nll~e~L~~~a~LI~G~prp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gv-L~HT 117 (265)
T cd00281 39 VIAACEGSLAAGATQVLVKDSHDSGRNLIPERLPEPVQLISGSGHPYCMVQGLDRSFDALLFIGYHARAGTAANV-MAHS 117 (265)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCccccChhHCCcCEEEEecCCCcchhhhccccCccEEEEEecCCcccCCCCc-cccc
Confidence 4567888889999999988775433 22222122445555321 22222222234 3334221343 2332
Q ss_pred Chh-h----------HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590 85 GPG-C----------VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ 153 (482)
Q Consensus 85 GpG-~----------~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~ 153 (482)
-.| . +-..-.-+-|-.-++||+++||+.......+.-+..+.....-+.+..++..-.+|+.+.+.|++
T Consensus 118 ~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~ea~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~~ 197 (265)
T cd00281 118 YTTEVSQIRINGQAIAEFHLNALTAGYYGVPVVMVAGDAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIRE 197 (265)
T ss_pred cccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEEeeeeCCCccccCCHHHHHHHHHH
Confidence 111 1 11222334455679999999998644322222222222333445567788888899999999999
Q ss_pred HHHHhh
Q 011590 154 VLERAV 159 (482)
Q Consensus 154 A~~~a~ 159 (482)
+.+.|+
T Consensus 198 ~a~~Al 203 (265)
T cd00281 198 GTEGSL 203 (265)
T ss_pred HHHHHH
Confidence 998885
No 351
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=60.76 E-value=5.1 Score=39.17 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=35.3
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCChHHHH---HHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFSAVEVE---VWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~~~eL~---T~~r~~l~i~~~ 482 (482)
+.|-.|-.+|.+.|+++|. .+.-++.|-|||+..-. |-++ -+.=.+||++.|
T Consensus 163 GnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQG-Q~fEa~NMA~LW~LP~IFv 221 (394)
T KOG0225|consen 163 GNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQG-QVFEAFNMAALWKLPVIFV 221 (394)
T ss_pred ccceeccCCCccccHHHHHHhccCCceEEEEeccccccch-hHHHHhhHHHHhCCCEEEE
Confidence 4566777888888888884 45678999999998643 3211 122357887653
No 352
>PRK02399 hypothetical protein; Provisional
Probab=59.88 E-value=1.3e+02 Score=30.75 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecC----CcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 95 LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAK----DITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~----~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+..|-..++|-|+..|.-+ ....+..+++...=-=|++-++.-.++ ++++..++ -+.+..-+...+|||-+.|
T Consensus 264 l~Aa~~~gIP~Vvs~GalD--mVnFg~~~tvPe~f~~R~~~~HNp~vTlmRTt~eE~~~~-g~~ia~kLn~a~gpv~vll 340 (406)
T PRK02399 264 LEAAARTGIPQVVSPGALD--MVNFGAPDTVPEKFRGRLLYKHNPQVTLMRTTPEENRQI-GRWIAEKLNRAKGPVAFLI 340 (406)
T ss_pred HHHHHHcCCCEEecCCcee--eeecCCcccccHhhcCCcceecCCcceeeecCHHHHHHH-HHHHHHHHhcCCCCeEEEE
Confidence 4556678999999988753 233333343332111133444443343 44444333 3444444455569999999
Q ss_pred Ccc
Q 011590 171 PTD 173 (482)
Q Consensus 171 P~d 173 (482)
|..
T Consensus 341 P~~ 343 (406)
T PRK02399 341 PLG 343 (406)
T ss_pred eCC
Confidence 986
No 353
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.56 E-value=16 Score=39.82 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCccc--cccHHHHHHHHHHhCCcEeeCC-CCCCCCCCCCCcccchH----H
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAY--ARAEGELKKLVESTGIPFLPTP-MGKGLLPDTHPLAATAA----R 271 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~--~~~~~~l~~lae~~g~pv~~t~-~~~g~~~~~hp~~~G~~----~ 271 (482)
+++++.+++.|++. +...++.|.+... ......+.+|++.+|.++.... ...+....-.+..+|.. .
T Consensus 81 DeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (617)
T cd02770 81 DEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAAASGSS 160 (617)
T ss_pred HHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecCCCCCC
Confidence 35666666666552 2223444444321 1124566788888886432110 00011111123333421 1
Q ss_pred HHhhhcCCEEEEecCccCcccccC--CCCCC----CCCCcEEEEeCCchhhc
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFG--EPPKW----SKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g--~~~~~----~~~~~ii~id~d~~~~~ 317 (482)
..-+.+||+||++|+++....... ....+ ..++|+|.||+......
T Consensus 161 ~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA 212 (617)
T cd02770 161 LDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTA 212 (617)
T ss_pred HHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccc
Confidence 234578999999999876432210 00011 35789999999776553
No 354
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=59.53 E-value=17 Score=40.70 Aligned_cols=109 Identities=12% Similarity=0.088 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC---CCcccchHHHHhhh
Q 011590 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDT---HPLAATAARSLAIG 276 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~---hp~~~G~~~~~~l~ 276 (482)
+++++.+++.|++.+ .-+.+.++.. .....+.+|+..+|.|-+.+. +.-+.... +...+|.....-++
T Consensus 120 dEAl~~ia~~l~~i~~~~G~~~i~~~~~~~---~~~~~~~~~~~~~Gs~n~~~~-~~~c~~~~~~~~~~~~G~~~~~D~~ 195 (759)
T PRK15488 120 DEAYQEIAAKLNAIKQQHGPESVAFSSKSG---SLSSHLFHLATAFGSPNTFTH-ASTCPAGYAIAAKVMFGGKLKRDLA 195 (759)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEeecCCC---cHHHHHHHHHHHcCCCCCCCc-cccccchhhhhHHhhcCCCccCCHh
Confidence 456677777665421 2233322111 122357789998998733221 11111111 12222321123468
Q ss_pred cCCEEEEecCccCcccccCCCC----CC-CCCCcEEEEeCCchhhc
Q 011590 277 QCDVALVVGARLNWLLHFGEPP----KW-SKDVKFVLVDVCKEEIE 317 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~g~~~----~~-~~~~~ii~id~d~~~~~ 317 (482)
+||+||++|+++.......+.. .. .++.|+|.||+......
T Consensus 196 ~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta 241 (759)
T PRK15488 196 NSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVA 241 (759)
T ss_pred hCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcch
Confidence 9999999998875421111111 11 35789999999776553
No 355
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=59.37 E-value=25 Score=34.55 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCC-ccccccHHHHHHHHHHhCCcEee---CCCCCCCCCC-CCCcccchHHHHhhhcCCE
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKG-AAYARAEGELKKLVESTGIPFLP---TPMGKGLLPD-THPLAATAARSLAIGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g-~~~~~~~~~l~~lae~~g~pv~~---t~~~~g~~~~-~hp~~~G~~~~~~l~~aDl 280 (482)
+..+++.+.|..+...+|++|-| .-.+++...+.++++.++++++. .|.. +.. ..++..-...+.+.+.+|.
T Consensus 73 ~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~---~Eg~~~~~nA~~~l~~L~~~~d~ 149 (304)
T cd02201 73 ESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS---FEGKKRMRQAEEGLEELRKHVDT 149 (304)
T ss_pred HHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc---ccchhHHHHHHHHHHHHHHhCCE
Confidence 45566777888888888888743 33457788899999999987553 2321 111 1122222233456678999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
++++-
T Consensus 150 ~ivid 154 (304)
T cd02201 150 LIVIP 154 (304)
T ss_pred EEEEe
Confidence 99883
No 356
>PRK09330 cell division protein FtsZ; Validated
Probab=59.16 E-value=25 Score=35.84 Aligned_cols=81 Identities=14% Similarity=0.084 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEeeCCCCCCCCCCC-CCcccchHHHHhhhcCCEEE
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDT-HPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~-hp~~~G~~~~~~l~~aDlvl 282 (482)
++..+++.+.|..+.-.+|.+|-|.- .+++...+.++|+.+|++++.=..-.-.|... .++.+-.....+.+.+|.+|
T Consensus 85 ee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vI 164 (384)
T PRK09330 85 EESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLI 164 (384)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEE
Confidence 34566777888889999999985543 35777889999999998865321111111111 01111112345667899999
Q ss_pred Eec
Q 011590 283 VVG 285 (482)
Q Consensus 283 ~iG 285 (482)
+|-
T Consensus 165 vi~ 167 (384)
T PRK09330 165 VIP 167 (384)
T ss_pred EEe
Confidence 994
No 357
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=58.54 E-value=31 Score=35.87 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
....+++..|.+..+.+.++.....+..+.+.+..+++++++|++...
T Consensus 110 TtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~ 157 (437)
T PRK00771 110 TTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDP 157 (437)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecC
Confidence 456677777777666777777777777888999999999999988653
No 358
>PRK09939 putative oxidoreductase; Provisional
Probab=58.37 E-value=7.7 Score=43.30 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCC--EEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC---CcccchH----HHHhh
Q 011590 205 NSDIDKAVSLLKEAKKP--LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH---PLAATAA----RSLAI 275 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rp--vil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h---p~~~G~~----~~~~l 275 (482)
+++++.+++.|++.+.| +.+.+++-...++.-.+..|+..+|.+-+.+.. +-+-..+. ...+|.. ..+-+
T Consensus 128 dEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s-~~C~~~~~~~l~~~~G~g~~t~~l~Di 206 (759)
T PRK09939 128 QQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCS-NMCHEPTSVGLAASIGVGKGTVLLEDF 206 (759)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCC-CCCchHHHHHHHHhcCCCCCCCCHHHH
Confidence 46777888888775445 334443322122233568888888876553221 11000000 0011211 11236
Q ss_pred hcCCEEEEecCccCccccc--CCCCC-CCCCCcEEEEeCCc
Q 011590 276 GQCDVALVVGARLNWLLHF--GEPPK-WSKDVKFVLVDVCK 313 (482)
Q Consensus 276 ~~aDlvl~iG~~~~~~~~~--g~~~~-~~~~~~ii~id~d~ 313 (482)
++||+||++|+++.+...- .+... -..++|+|.||+-.
T Consensus 207 ~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~ 247 (759)
T PRK09939 207 EKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQ 247 (759)
T ss_pred hhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 8999999999987642110 01111 13578999999843
No 359
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=58.10 E-value=23 Score=34.14 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
.+.+.+++++++|.+++| ++++|.|....-+ ..+.....++|.++.... +. .........+.+-|++|
T Consensus 113 id~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a-~~~~~~l~~~g~~~~~~~---------~~-~~~~~~~~~~~~~D~vI 180 (284)
T PRK11302 113 LDPSAINRAVDLLTQAKK-ISFFGLGASAAVA-HDAQNKFFRFNVPVVYFD---------DI-VMQRMSCMNSSDGDVVV 180 (284)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEcchHHHHH-HHHHHHHHhcCCceEecC---------CH-HHHHHHHHhCCCCCEEE
Confidence 457889999999999976 8999988643322 233333345787766321 11 11111123456789999
Q ss_pred EecCccCcccccCCCCCC-CCCCcEEEEeC
Q 011590 283 VVGARLNWLLHFGEPPKW-SKDVKFVLVDV 311 (482)
Q Consensus 283 ~iG~~~~~~~~~g~~~~~-~~~~~ii~id~ 311 (482)
++..+-.....-.-.... ..++++|.|..
T Consensus 181 ~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 181 LISHTGRTKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCeEEEECC
Confidence 995433211000000000 35688888874
No 360
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=57.94 E-value=43 Score=32.21 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=55.1
Q ss_pred cEEEEEcCChhhHh----hHHHHHHhhhCCCc---EEEEeCCCCcccCCCCC--CCCcCHhhhhcccc--ceeeecCCcC
Q 011590 77 PGILLTVSGPGCVH----GLAGLSNGMINTWP---IVMISGSCDQKDFGRGD--FQELDQVEAVKPFS--KFAVKAKDIT 145 (482)
Q Consensus 77 ~~v~~~t~GpG~~N----~~~ai~~A~~~~~P---vl~i~g~~~~~~~~~~~--~q~~d~~~~~~~~~--k~~~~~~~~~ 145 (482)
..++++..|=|+.. ..-++--|...+.| +|++.-+-.....-... ....+.....+.+- .....-.+++
T Consensus 140 ~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~ 219 (265)
T cd02016 140 KVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPE 219 (265)
T ss_pred CeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHH
Confidence 56777776766632 22344446677777 88887653211100000 00112233334432 2333445788
Q ss_pred cHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 146 EVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 146 ~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
++.+.+++|++.+..++ ||+.|++-.
T Consensus 220 aV~~a~~~A~~~~r~g~-gp~lIe~~t 245 (265)
T cd02016 220 AVVRATRLALEYRQKFK-KDVVIDLVC 245 (265)
T ss_pred HHHHHHHHHHHHHHhcC-CCEEEEEEE
Confidence 99999999999999987 999998743
No 361
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=57.83 E-value=45 Score=33.86 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHH--hCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch---HHHHhh--hc
Q 011590 205 NSDIDKAVSLLK--EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA---ARSLAI--GQ 277 (482)
Q Consensus 205 ~~~~~~~~~~L~--~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~---~~~~~l--~~ 277 (482)
...++++.+.+. ..||++|+.+.+....+-.+.+.+..+..++.+. +|++--|----. .+.+.+ .+
T Consensus 14 ~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~-------if~~v~p~P~~~~v~~~~~~~~~~~ 86 (377)
T COG1454 14 RGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYE-------VFDEVEPEPTIETVEAGAEVAREFG 86 (377)
T ss_pred CChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEE-------EecCCCCCCCHHHHHHHHHHHHhcC
Confidence 345677777776 4599999999998777888888888888886643 233322211111 122333 37
Q ss_pred CCEEEEec
Q 011590 278 CDVALVVG 285 (482)
Q Consensus 278 aDlvl~iG 285 (482)
+|+||.||
T Consensus 87 ~D~iIalG 94 (377)
T COG1454 87 PDTIIALG 94 (377)
T ss_pred CCEEEEeC
Confidence 99999999
No 362
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=57.75 E-value=64 Score=28.66 Aligned_cols=91 Identities=13% Similarity=0.099 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChH--HHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH-hhH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV-HGL 92 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~-N~~ 92 (482)
--+.+++.|.+.+-=++||.-++... .+...+..-|+..+...+. . .... ++--++++-|..|-+ ..+
T Consensus 19 ~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~-------~~~~-~~~Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 19 ELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGET-T-------TPSI-KKGDLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCc-c-------cCCC-CCCCEEEEEeCCCCcHHHH
Confidence 34567888888886677777665432 2222333456655544332 1 1223 333455555556644 456
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~ 115 (482)
..+..|+..++|++.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 77888999999999999977544
No 363
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=56.88 E-value=29 Score=30.03 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=19.4
Q ss_pred hHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccccc
Q 011590 437 GLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 437 ~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~ 481 (482)
+..+|.|.+.+.....++..+..-|+.-..+.|.++.+.++|+++
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~ 90 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLV 90 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEE
Confidence 333444444443212233333344444444555555555555543
No 364
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=56.82 E-value=11 Score=29.34 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=39.3
Q ss_pred CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCC--CCCCCCCCCCcccchHHHHhhhcCCEEEEecCccC
Q 011590 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM--GKGLLPDTHPLAATAARSLAIGQCDVALVVGARLN 289 (482)
Q Consensus 220 rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~--~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~ 289 (482)
+.|+-+|.|+...+..+.+++||+.+|+-|-+|.. ..|.+|.+ .++|..+.. =..++.|++|.+=.
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~sG~~--v~P~lyia~GISGa 75 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQSGKT--VAPKLYIAFGISGA 75 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBSTTSB----T-SEEEEES----
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCCCCcE--EeeeeeEeecchhh
Confidence 44566677776667888999999999999998854 35666654 455543321 25789999997644
No 365
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=56.73 E-value=13 Score=37.64 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCEEEEcCCccccccH----HHHHHHHHHhCC
Q 011590 209 DKAVSLLKEAKKPLIVFGKGAAYARAE----GELKKLVESTGI 247 (482)
Q Consensus 209 ~~~~~~L~~a~rpvil~G~g~~~~~~~----~~l~~lae~~g~ 247 (482)
..+++.|+++|+|+||+|.++...... ..+..|++..+.
T Consensus 212 ~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~~~ 254 (366)
T cd02774 212 HLFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNNEN 254 (366)
T ss_pred hHHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhhcC
Confidence 356788999999999999998765333 335566666443
No 366
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=56.69 E-value=77 Score=28.20 Aligned_cols=92 Identities=9% Similarity=0.033 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChH--HHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHH
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG 94 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~a 94 (482)
-+.+++.|.+.+-=++||+-++... .+...|..-|+.++...+ .. ....+.+-.+++++...-..+.+..
T Consensus 23 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-~~-------~~~~~~~D~vI~iS~sG~t~~~i~~ 94 (179)
T cd05005 23 LDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE-TT-------TPAIGPGDLLIAISGSGETSSVVNA 94 (179)
T ss_pred HHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCC-CC-------CCCCCCCCEEEEEcCCCCcHHHHHH
Confidence 3567888888876677787554322 222233345666665432 11 1123333334444434346667788
Q ss_pred HHHhhhCCCcEEEEeCCCCccc
Q 011590 95 LSNGMINTWPIVMISGSCDQKD 116 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~~ 116 (482)
+..|...++|+|.||+......
T Consensus 95 ~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 95 AEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred HHHHHHCCCeEEEEECCCCCch
Confidence 8889999999999999875443
No 367
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.41 E-value=7 Score=40.86 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC---Ccc---cchHHHH
Q 011590 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH---PLA---ATAARSL 273 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h---p~~---~G~~~~~ 273 (482)
+++++.+++.|++.+ +-+++.|+... ....+.+|++.+|.+-+.+...- +....+ ... .+.....
T Consensus 77 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~---~~~~~~~~~~~lGt~n~~~~~~~-c~~~~~~~~~~~~g~~~~~~~~ 152 (454)
T cd02755 77 DEALQYIASKLKEIKEQHGPESVLFGGHGGC---YSPFFKHFAAAFGSPNIFSHEST-CLASKNLAWKLVIDSFGGEVNP 152 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEecCCc---ccHHHHHHHHHhCCCCCCCcccc-chhHHHHHHHHHhhccCCCCCc
Confidence 355666666666532 22333333321 33467889998998744321110 000000 000 0111123
Q ss_pred hhhcCCEEEEecCccCcccccCCC----CCCCCCCcEEEEeCCchhh
Q 011590 274 AIGQCDVALVVGARLNWLLHFGEP----PKWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 274 ~l~~aDlvl~iG~~~~~~~~~g~~----~~~~~~~~ii~id~d~~~~ 316 (482)
-+.+||+||++|+++.+....... ....++.|+|.||+.....
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~t 199 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSEL 199 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 467899999999987543211010 1113568999999866544
No 368
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=56.41 E-value=32 Score=34.58 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccc-cccHHHHHHHHHHhCCcEeeCCCCCCCCCC-CCCcccchHHHHhhhcCCEEEE
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPMGKGLLPD-THPLAATAARSLAIGQCDVALV 283 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~-~~~~~~l~~lae~~g~pv~~t~~~~g~~~~-~hp~~~G~~~~~~l~~aDlvl~ 283 (482)
+..+++.+.|..+...+|++|-|.-. +++...+.++++.++++++.-..-...+.. ..|+..-..-..+.+.+|.+|+
T Consensus 90 e~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~viv 169 (349)
T TIGR00065 90 ESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIV 169 (349)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEE
Confidence 45566777788889988888865433 577888999999999876532211111111 1122222234466778999999
Q ss_pred ec
Q 011590 284 VG 285 (482)
Q Consensus 284 iG 285 (482)
+-
T Consensus 170 id 171 (349)
T TIGR00065 170 IP 171 (349)
T ss_pred Ee
Confidence 94
No 369
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=56.39 E-value=17 Score=35.42 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCC
Q 011590 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~ 254 (482)
..++.+++++.++|+++++.|++.|.|+... -|||-|-+..
T Consensus 3 ~~~~~~l~~l~~~i~~~~~ivvlTGAGiS~~------------SGIPdFR~~~ 43 (285)
T PRK05333 3 DADPAALDALQDFVERHPRLFVLTGAGISTD------------SGIPDYRDRN 43 (285)
T ss_pred cccHHHHHHHHHHHHhCCcEEEEeCCccccc------------cCCCcccCCC
Confidence 4567889999999999999999999998432 4778776554
No 370
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=56.38 E-value=14 Score=41.22 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhC--CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC--Ccccch----HHHHhhh
Q 011590 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH--PLAATA----ARSLAIG 276 (482)
Q Consensus 205 ~~~~~~~~~~L~~a--~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h--p~~~G~----~~~~~l~ 276 (482)
+++++.+++.|++. +...++.++.. .....-...+|+..+|.+-+.+...-+.-+... ..-+|. ....-++
T Consensus 119 dEAl~~IA~kL~~~~p~~i~~y~sg~~-s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~ 197 (743)
T TIGR01701 119 DDAYQEIAAKLNSLDPKQVAFYTSGRT-SNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFE 197 (743)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCCc-chHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCCCCCCCHhHHH
Confidence 46777778888765 55555555432 123334567899989987553221101000000 111221 1123467
Q ss_pred cCCEEEEecCccCccccc--CCCC-CCCCCCcEEEEeCCc
Q 011590 277 QCDVALVVGARLNWLLHF--GEPP-KWSKDVKFVLVDVCK 313 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~--g~~~-~~~~~~~ii~id~d~ 313 (482)
+||+||++|.++.....- .+.. ....++|+|.||+-.
T Consensus 198 ~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~ 237 (743)
T TIGR01701 198 HTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLR 237 (743)
T ss_pred hCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 899999999987642210 0110 113578999999844
No 371
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=56.13 E-value=9.4 Score=38.25 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCcccchHHHHHHHhhhC-----CCCcEEEEEcchhccCChHHHHHHH----HcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC-----PERLVVAVEGDSGFGFSAVEVEVWL----SCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~-----p~~~vi~~~GDGsf~~~~~eL~T~~----r~~l~i~~~ 482 (482)
..+.+|..+|-|.|+|+|. .++-++++.|||+-.-. +++.+. =+++|++.|
T Consensus 134 ~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG--~FhEalN~A~v~klPvvf~ 193 (358)
T COG1071 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQG--DFHEALNFAAVWKLPVVFV 193 (358)
T ss_pred CCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccc--hHHHHHHHHHHhcCCEEEE
Confidence 3577788899999988883 23479999999986432 333333 488888753
No 372
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=55.93 E-value=17 Score=38.62 Aligned_cols=106 Identities=17% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHHHHhCC-cEeeCCCCCCCCCCCCCc------ccchHH
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGI-PFLPTPMGKGLLPDTHPL------AATAAR 271 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~lae~~g~-pv~~t~~~~g~~~~~hp~------~~G~~~ 271 (482)
+++++.+++.|++ .++..++.|++.. ......+.+|++..+. +.+.........+....+ ......
T Consensus 72 deAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~-~e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 150 (512)
T cd02753 72 DEALSLVASRLKEIKDKYGPDAIAFFGSAKCT-NEENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGSGAMTNS 150 (512)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCC-cHHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCCCCCCCC
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCC---CCCCcEEEEeC
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKW---SKDVKFVLVDV 311 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~---~~~~~ii~id~ 311 (482)
..-++++|+||++|+++............ ..++++|.||+
T Consensus 151 ~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp 193 (512)
T cd02753 151 IADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADP 193 (512)
T ss_pred HHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcC
No 373
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=54.93 E-value=20 Score=38.17 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC--CcccchH--HHHh
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH--PLAATAA--RSLA 274 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h--p~~~G~~--~~~~ 274 (482)
+++++.+++.|++. ++.+++.|.... .....+.+|+..+|.|-+.+...-..-+... ....|.. ...-
T Consensus 82 deAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~--~~~~~~~r~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~g~~~~~~~D 159 (523)
T cd02757 82 DEALDTIADKIRALRKENEPHKIMLHRGRYGH--NNSILYGRFTKMIGSPNNISHSSVCAESEKFGRYYTEGGWDYNSYD 159 (523)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEeCCCCC--ccchHHHHHHHHhCcCCCcCCcchhhhHHHHHHHHHhCCCCCCCcc
Confidence 35566666666543 334556665432 2222678999999998553322111000000 0001110 1124
Q ss_pred hhcCCEEEEecCccCcccccCC-CCC----CCCCCcEEEEeCCchhh
Q 011590 275 IGQCDVALVVGARLNWLLHFGE-PPK----WSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~g~-~~~----~~~~~~ii~id~d~~~~ 316 (482)
+++||+||++|+++-+...... ... -.+++|+|.||+.....
T Consensus 160 ~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~t 206 (523)
T cd02757 160 YANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNT 206 (523)
T ss_pred hhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChh
Confidence 6899999999988754221110 000 13578999999976554
No 374
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=54.86 E-value=35 Score=34.65 Aligned_cols=75 Identities=24% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~aDl 280 (482)
..++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+..-. + + +.+|-.-.. ....+. .++|+
T Consensus 12 g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~---~-v-~~~p~~~~v~~~~~~~~~~~~D~ 86 (376)
T cd08193 12 GSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFD---D-V-EADPPEAVVEAAVEAARAAGADG 86 (376)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEEC---C-C-CCCcCHHHHHHHHHHHHhcCCCE
Confidence 456667676665 589999999876555667788888888887553211 1 1 223333221 111222 37999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
||.||
T Consensus 87 IIaiG 91 (376)
T cd08193 87 VIGFG 91 (376)
T ss_pred EEEeC
Confidence 99999
No 375
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=54.64 E-value=11 Score=39.58 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHH-HHHHHhCCcEeeCCCCCCCCCCCCCc-----ccchHHH
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELK-KLVESTGIPFLPTPMGKGLLPDTHPL-----AATAARS 272 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~-~lae~~g~pv~~t~~~~g~~~~~hp~-----~~G~~~~ 272 (482)
+++++.+++.|++ .+...++.|.+.......-... +|+..+|.+.+.........+....+ +......
T Consensus 76 deAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 155 (477)
T cd02759 76 DEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTTGFGLGYDE 155 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhhccCCCCCc
Q ss_pred HhhhcCCEEEEecCccCcccc----cCCCCCCCCCCcEEEEeCCchhh
Q 011590 273 LAIGQCDVALVVGARLNWLLH----FGEPPKWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~----~g~~~~~~~~~~ii~id~d~~~~ 316 (482)
.-+++||+||++|+++..... ......-.++.|+|.||+.....
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~t 203 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWL 203 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChh
No 376
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.62 E-value=34 Score=34.62 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 207 DIDKAVSLLK-EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 207 ~~~~~~~~L~-~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
-..+.+..++ +..|+.++++.-- |+++.++|.+.|++.++|++.++
T Consensus 117 tc~KlA~y~kkkG~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsy 163 (483)
T KOG0780|consen 117 TCTKLAYYYKKKGYKVALVCADTF-RAGAFDQLKQNATKARVPFYGSY 163 (483)
T ss_pred eHHHHHHHHHhcCCceeEEeeccc-ccchHHHHHHHhHhhCCeeEecc
Confidence 4455665555 4678888887554 58999999999999999999754
No 377
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=53.45 E-value=7.2 Score=37.34 Aligned_cols=143 Identities=15% Similarity=0.017 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChH-HHHHHHHhCCCcEEecC-----------chHHHHHHHHH-HHhHhCCcEEEEEc
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVT-SLANRAVQLGVRFIAFH-----------NEQSAGYAASA-YGYLTGKPGILLTV 83 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~i~~v~~~-----------~E~~A~~~A~g-~ar~tgk~~v~~~t 83 (482)
..+.++.+.+.|.+.|...=++..+ .|+-...+...++|.-. +|.--+.+=.| ++++.+.. .++.|
T Consensus 39 vnAaiega~~aGa~eIvV~DsHg~~~Nll~e~L~~~a~lI~G~~~rp~~Mm~Gld~s~D~v~fiGYHa~ag~~~-gvL~H 117 (263)
T cd08770 39 VVAACEGAIEAGATEIVVKDAHGSGRNILPSKLPDNVKLIRGWSGHPYCMVEGLDESFDAVMFIGYHSAAGSPG-NPLAH 117 (263)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCCcceEEEeCCCCCcchHhhccccCccEEEEEecCCccCCCC-Ccccc
Confidence 4467788889999999988775433 23222223456666432 22222222235 34443222 33334
Q ss_pred CChh-hH----------hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHH
Q 011590 84 SGPG-CV----------HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVA 152 (482)
Q Consensus 84 ~GpG-~~----------N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~ 152 (482)
+-.| .. -..-.-+-|-.-++||+++||+.......+.-+..+.....-+.+. ++....+|+.+.+.|+
T Consensus 118 T~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGD~~~~~ea~~~~P~~~tv~vK~~~g-~aa~~~~p~~a~~~I~ 196 (263)
T cd08770 118 TLTGGVSYVKINGEIASEFLINAYTAAYLGVPVVFVSGDAGLCAEAKELNPNIVTVPVKEGFG-GATISIHPGLACKEIR 196 (263)
T ss_pred ccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCceEEEeeeeec-cccccCCHHHHHHHHH
Confidence 3222 21 1222334456679999999998754432222122222222333455 6777778999999999
Q ss_pred HHHHHhhcC
Q 011590 153 QVLERAVSG 161 (482)
Q Consensus 153 ~A~~~a~~~ 161 (482)
++.+.|+..
T Consensus 197 ~~~~~Al~~ 205 (263)
T cd08770 197 KGVKKALSG 205 (263)
T ss_pred HHHHHHHhc
Confidence 999888644
No 378
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=53.41 E-value=17 Score=29.31 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=37.5
Q ss_pred CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCcc
Q 011590 220 KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL 288 (482)
Q Consensus 220 rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~ 288 (482)
|.++++|+|+..+-..+.++++++..|+++-....+-+ .....+.++| +|.+|...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~------------e~~~~~~~~D-vill~PQv 57 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYG------------SHYDMIPDYD-LVILAPQM 57 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHH------------HHHHhccCCC-EEEEcChH
Confidence 46788999977667889999999999998753322211 1223466789 55566544
No 379
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=53.40 E-value=41 Score=34.27 Aligned_cols=75 Identities=25% Similarity=0.285 Sum_probs=44.0
Q ss_pred HHHHHHHHHHh-CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCccc-chHHHHhh-hcCCEEEE
Q 011590 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-TAARSLAI-GQCDVALV 283 (482)
Q Consensus 207 ~~~~~~~~L~~-a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~-G~~~~~~l-~~aDlvl~ 283 (482)
.++++.+.++. .+|++|+.|......+..+.+.+..++.|+.+..- .+.-++ .|..- -.....+. .++|+||.
T Consensus 10 ~l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f---~~v~~~-~~~~~v~~~~~~~~~~~~D~IIa 85 (386)
T cd08191 10 QRRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVF---DGVLPD-LPRSELCDAASAAARAGPDVIIG 85 (386)
T ss_pred HHHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEE---CCCCCC-cCHHHHHHHHHHHHhcCCCEEEE
Confidence 45566555554 38899999887765577777887778878765421 121111 12221 11111222 47999999
Q ss_pred ec
Q 011590 284 VG 285 (482)
Q Consensus 284 iG 285 (482)
||
T Consensus 86 iG 87 (386)
T cd08191 86 LG 87 (386)
T ss_pred eC
Confidence 99
No 380
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=52.96 E-value=43 Score=34.53 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aDl 280 (482)
..++++.+.+++ .+|++|+.|.+....+..+.+.+..+..|+.+..-. ++- .+|-.-.. .+.+.. .++|+
T Consensus 9 g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~---~v~--~~p~~~~v~~~~~~~~~~~~D~ 83 (414)
T cd08190 9 GVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYD---DVR--VEPTDESFKDAIAFAKKGQFDA 83 (414)
T ss_pred CHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeC---CCC--CCcCHHHHHHHHHHHHhcCCCE
Confidence 345666666654 489999999887766667788887787777654211 111 12321111 111222 36999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
||.||
T Consensus 84 IIaiG 88 (414)
T cd08190 84 FVAVG 88 (414)
T ss_pred EEEeC
Confidence 99999
No 381
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=52.72 E-value=72 Score=30.35 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=53.0
Q ss_pred HHHHHHhHh-----CCcEEEEEcCChhhHh---hHHHHHHhhhCCCc-EEEEeCCCCcccCCC--CCCCCcCHhhhhccc
Q 011590 66 AASAYGYLT-----GKPGILLTVSGPGCVH---GLAGLSNGMINTWP-IVMISGSCDQKDFGR--GDFQELDQVEAVKPF 134 (482)
Q Consensus 66 ~A~g~ar~t-----gk~~v~~~t~GpG~~N---~~~ai~~A~~~~~P-vl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~ 134 (482)
+|.|.+.+. .+..+|++ |=|..+ ..-++..|...++| +++|.-+......+. ......|....++.+
T Consensus 113 ~avG~Ala~~~~~~~~~v~~i~--GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~ 190 (255)
T cd02012 113 VAVGMALAEKLLGFDYRVYVLL--GDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAF 190 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEEEE--CcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHc
Confidence 445555432 33444444 556555 46788889999988 444443322211111 111123455666666
Q ss_pred cceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 135 ~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.-...++. +.+++ .+|++.+...+.+|+.|++-..
T Consensus 191 G~~~~~v~G~d~~~l----~~al~~a~~~~~~P~~I~~~t~ 227 (255)
T cd02012 191 GWNVIEVDGHDVEEI----LAALEEAKKSKGKPTLIIAKTI 227 (255)
T ss_pred CCeEEEECCCCHHHH----HHHHHHHHHcCCCCEEEEEEee
Confidence 33344555 44444 5555555543247888887654
No 382
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=51.75 E-value=48 Score=33.78 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCC
Q 011590 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCD 279 (482)
Q Consensus 205 ~~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aD 279 (482)
+..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+.. .. ++-| +|-+-.. .+.+.. .++|
T Consensus 16 ~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~-f~--~v~~--np~~~~v~~~~~~~~~~~~D 90 (383)
T PRK09860 16 ADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVI-YD--GTQP--NPTTENVAAGLKLLKENNCD 90 (383)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eC--CCCC--CcCHHHHHHHHHHHHHcCCC
Confidence 3556777676665 4888988887776667778888888888876421 10 1111 3322111 112222 4799
Q ss_pred EEEEecC
Q 011590 280 VALVVGA 286 (482)
Q Consensus 280 lvl~iG~ 286 (482)
+||.||.
T Consensus 91 ~IiaiGG 97 (383)
T PRK09860 91 SVISLGG 97 (383)
T ss_pred EEEEeCC
Confidence 9999994
No 383
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=51.65 E-value=42 Score=34.15 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCC
Q 011590 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCD 279 (482)
Q Consensus 205 ~~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aD 279 (482)
...++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..-. ++ +.+|-.-.. .....+ .++|
T Consensus 15 ~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~---~v--~~~p~~~~v~~~~~~~~~~~~D 89 (382)
T PRK10624 15 RGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYD---GV--KPNPTIEVVKEGVEVFKASGAD 89 (382)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeC---CC--CCCcCHHHHHHHHHHHHhcCCC
Confidence 3456777776665 478888888877666778888888888887653211 11 123322111 111222 3699
Q ss_pred EEEEecC
Q 011590 280 VALVVGA 286 (482)
Q Consensus 280 lvl~iG~ 286 (482)
+||.||.
T Consensus 90 ~IIaiGG 96 (382)
T PRK10624 90 YLIAIGG 96 (382)
T ss_pred EEEEeCC
Confidence 9999994
No 384
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=51.41 E-value=46 Score=33.83 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hcCC
Q 011590 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQCD 279 (482)
Q Consensus 205 ~~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~aD 279 (482)
+..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+.. .. + + +.||-.-.. ....+- .++|
T Consensus 13 ~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-f~--~-v-~~~p~~~~v~~~~~~~~~~~~D 87 (377)
T cd08176 13 AGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI-YD--G-V-KPNPTITNVKDGLAVFKKEGCD 87 (377)
T ss_pred cCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEE-eC--C-C-CCCCCHHHHHHHHHHHHhcCCC
Confidence 3456777776765 4788888888776557788888888888886532 11 1 1 123433211 122222 3799
Q ss_pred EEEEecC
Q 011590 280 VALVVGA 286 (482)
Q Consensus 280 lvl~iG~ 286 (482)
+||.||.
T Consensus 88 ~IIavGG 94 (377)
T cd08176 88 FIISIGG 94 (377)
T ss_pred EEEEeCC
Confidence 9999994
No 385
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.03 E-value=2.1e+02 Score=26.76 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=76.7
Q ss_pred CcHHHHHHHHHHhc--CCCEEEecCCcC-------hHHHHHHHHhCCCcEEecC----chHHHHHHHHHHHhHhCCcEEE
Q 011590 14 IDGNTLAAKSLSLF--GATHMFGVVGIP-------VTSLANRAVQLGVRFIAFH----NEQSAGYAASAYGYLTGKPGIL 80 (482)
Q Consensus 14 ~~~~~~l~~~L~~~--Gv~~vFgvpG~~-------~~~l~~al~~~~i~~v~~~----~E~~A~~~A~g~ar~tgk~~v~ 80 (482)
..++...++.|.+. |-+.+.-+-|.. ...+.+.+.+.+++++... +...+.-.+..+-+....+-++
T Consensus 110 ~~~g~~aa~~l~~~~~g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 189 (274)
T cd06311 110 YGMGRVAGEYIATKLGGNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILDRQYANWNRDDAFSVMQDLLTKFPKIDAV 189 (274)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEeccCCCCcHHHHHHHHHHHHHhCCCcCEE
Confidence 34677788888887 766665444421 2334445555566655321 1111111111221122446788
Q ss_pred EEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccc--cceeeecCCcCcHHHHHHHHHHHh
Q 011590 81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPF--SKFAVKAKDITEVPKCVAQVLERA 158 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~--~k~~~~~~~~~~~~~~l~~A~~~a 158 (482)
++++..-+..++.++.++-... -+.+++++... +...+.+.= .-......++......+..+++..
T Consensus 190 ~~~~d~~a~g~~~al~~~g~~~-~~~ivg~d~~~-----------~~~~~i~~g~~~~~~~v~~~~~~~~~~~~~~~~~~ 257 (274)
T cd06311 190 WAHDDDMAVGVLAAIKQAGRTD-IKFVVGGAGSK-----------DMIKMIMDGDPLIPADVLYPPSMIASAIDLTVALF 257 (274)
T ss_pred EECCCcHHHHHHHHHHHcCCCC-CceEEEeCCCH-----------HHHHHHHCCCCceeEEEecCHHHHHHHHHHHHHHH
Confidence 8887765566666666543321 34445443211 122233221 011122234556667777777777
Q ss_pred hcCCCceEEEEcCcch
Q 011590 159 VSGRPGGCYLDLPTDV 174 (482)
Q Consensus 159 ~~~~~gPv~l~iP~dv 174 (482)
..+.++|.++.||..+
T Consensus 258 ~g~~~~~~~~~v~~~~ 273 (274)
T cd06311 258 QGGMPGLGQFIIPARL 273 (274)
T ss_pred cCCCCCCcceecccee
Confidence 7777788888888654
No 386
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=51.00 E-value=48 Score=33.37 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHh-CCCCEEEEcCCc-cccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hcCCE
Q 011590 206 SDIDKAVSLLKE-AKKPLIVFGKGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~-a~rpvil~G~g~-~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~aDl 280 (482)
..++++.+.+++ .+|++|+.|... ...+..+.+.+..+..|+.+..-. +. +.+|-.-.. ....+. .++|+
T Consensus 12 g~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~---~v--~~~p~~~~v~~~~~~~~~~~~D~ 86 (357)
T cd08181 12 NCVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFD---EV--EENPSLETIMEAVEIAKKFNADF 86 (357)
T ss_pred CHHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeC---CC--CCCcCHHHHHHHHHHHHhcCCCE
Confidence 345566565554 488999998876 445667778888888777653211 11 123422211 112222 36899
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
||.||
T Consensus 87 IIavG 91 (357)
T cd08181 87 VIGIG 91 (357)
T ss_pred EEEeC
Confidence 99999
No 387
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=50.90 E-value=65 Score=25.06 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 233 ~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
-+.+.|++-|+++|+.+-.+..|..-+.. + ...+-+.+||+||.+|....+... .| .+.+++.++++
T Consensus 15 lAae~L~~aA~~~G~~i~VE~qg~~g~~~--~-----lt~~~i~~Ad~viia~d~~~~~~~-----rf-~gk~v~~~~~~ 81 (85)
T TIGR00829 15 MAAEALEKAAKKRGWEVKVETQGSVGAQN--A-----LTAEDIAAADGVILAADREIDLSR-----RF-AGKNVYETSTG 81 (85)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCccC--C-----CCHHHHHhCCEEEEeccCCCchhh-----hc-CCCeEEEecHH
Confidence 56788999999999998876665421211 1 223668899999999975432111 02 24477766654
No 388
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.69 E-value=73 Score=30.68 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccc----------cccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHH
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAY----------ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSL 273 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~----------~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~ 273 (482)
+++.+.+.++.|++..-+++..|.--.| ....+.+.+.++++|+|++++.+... +. .+
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~-----~~-------~~ 106 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTR-----DV-------EE 106 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChh-----hH-------HH
Confidence 4677888999999998898888822111 23456789999999999999886532 11 12
Q ss_pred hhhcCCEEEEecCccC
Q 011590 274 AIGQCDVALVVGARLN 289 (482)
Q Consensus 274 ~l~~aDlvl~iG~~~~ 289 (482)
+.+-+| ++-||++.-
T Consensus 107 l~~~vd-~~kIga~~~ 121 (266)
T PRK13398 107 VADYAD-MLQIGSRNM 121 (266)
T ss_pred HHHhCC-EEEECcccc
Confidence 223356 788887664
No 389
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=50.65 E-value=1.1e+02 Score=29.57 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCEEEecCCcChH--HHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh-HhhHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC-VHGLAG 94 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~-~N~~~a 94 (482)
+.+++.|.+..--++||+-++... .+...+.+-|+..... ++...... ..... ++--++++-|..|- -+.+..
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~~~--~~~~~-~~~Dl~I~iS~sG~t~~~~~~ 206 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAY-DDAHIMLM--SAALL-QEGDVVLVVSHSGRTSDVIEA 206 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEc-CCHHHHHH--HHhcC-CCCCEEEEEeCCCCCHHHHHH
Confidence 456777777776788888765432 2333344556666544 33332222 22223 33345555555554 456677
Q ss_pred HHHhhhCCCcEEEEeCCCCcc
Q 011590 95 LSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~ 115 (482)
+..|...++|+|.||+.....
T Consensus 207 ~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 207 VELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHCCCeEEEEeCCCCCh
Confidence 778999999999999987444
No 390
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=50.36 E-value=43 Score=34.13 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=43.6
Q ss_pred HHHHHHHHHHh-----CCCCEEEEcCCccc-cccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hc
Q 011590 207 DIDKAVSLLKE-----AKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQ 277 (482)
Q Consensus 207 ~~~~~~~~L~~-----a~rpvil~G~g~~~-~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~ 277 (482)
.++++.+.+.+ .+|++|+.|..... .+..+.+.+..++.|+.+..-. +. +.+|-.-.. ....+- .+
T Consensus 10 ~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~---~v--~~~p~~~~v~~~~~~~~~~~ 84 (383)
T cd08186 10 AIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYN---KV--TPNPTVDQVDEAAKLGREFG 84 (383)
T ss_pred HHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeC---CC--CCCCCHHHHHHHHHHHHHcC
Confidence 45555555554 48899999877543 4666788888888888654211 11 122322111 112222 36
Q ss_pred CCEEEEecC
Q 011590 278 CDVALVVGA 286 (482)
Q Consensus 278 aDlvl~iG~ 286 (482)
+|+||.||.
T Consensus 85 ~D~IIaiGG 93 (383)
T cd08186 85 AQAVIAIGG 93 (383)
T ss_pred CCEEEEeCC
Confidence 999999993
No 391
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=50.30 E-value=43 Score=34.06 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aDl 280 (482)
..++++.+.+.+ .+|++|+.|......+..+.+.+..++.|+.+..-. +. +.+|-.-.. ...+.+ .++|+
T Consensus 15 g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~---~v--~~~p~~~~v~~~~~~~~~~~~D~ 89 (379)
T TIGR02638 15 GAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFD---EV--KPNPTITVVKAGVAAFKASGADY 89 (379)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEEC---CC--CCCcCHHHHHHHHHHHHhcCCCE
Confidence 456666666654 489999999887665677888888888888654211 11 123322111 111222 47999
Q ss_pred EEEecC
Q 011590 281 ALVVGA 286 (482)
Q Consensus 281 vl~iG~ 286 (482)
||.||.
T Consensus 90 IiaiGG 95 (379)
T TIGR02638 90 LIAIGG 95 (379)
T ss_pred EEEeCC
Confidence 999993
No 392
>PRK15482 transcriptional regulator MurR; Provisional
Probab=50.22 E-value=47 Score=32.14 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEE
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (482)
+.+.+++++++|.+|+| +.++|.|.. ....+.+.....++|.++...... .........+.+-|++|+
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G~S-~~~A~~l~~~l~~~g~~~~~~~d~----------~~~~~~~~~~~~~Dv~i~ 188 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLGGS-ALVGRDLSFKLMKIGYRVACEADT----------HVQATVSQALKKGDVQIA 188 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeChh-HHHHHHHHHHHHhCCCeeEEeccH----------hHHHHHHhcCCCCCEEEE
Q ss_pred ecCc
Q 011590 284 VGAR 287 (482)
Q Consensus 284 iG~~ 287 (482)
+..+
T Consensus 189 iS~s 192 (285)
T PRK15482 189 ISYS 192 (285)
T ss_pred EeCC
No 393
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=50.08 E-value=1.3e+02 Score=29.14 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCCEEEecCCcChH--HHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh-hHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH-GLAG 94 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N-~~~a 94 (482)
+..++.|.+..=-++||+..+... .+...|.+-|.+++...+..... .+....++--++++.|-.|-+. .+..
T Consensus 121 ~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~----~~~~~~~~~Dv~i~iS~sG~t~e~i~~ 196 (281)
T COG1737 121 ERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL----MQLALLTPGDVVIAISFSGYTREIVEA 196 (281)
T ss_pred HHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH----HHHHhCCCCCEEEEEeCCCCcHHHHHH
Confidence 456788888887889994444333 23334455677777776665543 2444334333555555555544 4567
Q ss_pred HHHhhhCCCcEEEEeCCCCcc
Q 011590 95 LSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~ 115 (482)
+..|...++|+|.||....+.
T Consensus 197 a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 197 AELAKERGAKVIAITDSADSP 217 (281)
T ss_pred HHHHHHCCCcEEEEcCCCCCc
Confidence 777999999999999876444
No 394
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.96 E-value=50 Score=37.06 Aligned_cols=81 Identities=9% Similarity=-0.053 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH------HHHhhhcCCEEEEecCccCcccccCCCCCC----CCCCcE
Q 011590 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA------RSLAIGQCDVALVVGARLNWLLHFGEPPKW----SKDVKF 306 (482)
Q Consensus 237 ~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~------~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~----~~~~~i 306 (482)
.+.+|+..+|.+-+....+.+.......+..|.. ...-+.+||+||++|+++...........+ ..++|+
T Consensus 127 ~~~~f~~~~Gs~n~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKl 206 (760)
T cd02760 127 TFPAFLAAWGPIDFSFGSGQGVKCVHSEHLYGEFWHRAFTVAADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKR 206 (760)
T ss_pred HHHHHHHHhCCCcccccCCccccccchhhhhcccccCCCCccchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeE
Confidence 4667888888765432211111110111122321 123467899999999997532110001001 246899
Q ss_pred EEEeCCchhhc
Q 011590 307 VLVDVCKEEIE 317 (482)
Q Consensus 307 i~id~d~~~~~ 317 (482)
|.||+......
T Consensus 207 IvVDPr~t~ta 217 (760)
T cd02760 207 VQVEPHLSVTG 217 (760)
T ss_pred EEEcCCCCcch
Confidence 99999776553
No 395
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=49.60 E-value=51 Score=33.51 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHh-CCCCEEEEcCCc-cccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCCE
Q 011590 206 SDIDKAVSLLKE-AKKPLIVFGKGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~-a~rpvil~G~g~-~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aDl 280 (482)
..++++.+.+++ .+|++|+.|.+. ...+..+.+.+..++.|+.+..-. ++- .+|-+-.. .....+ .++|+
T Consensus 12 g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~---~v~--~~p~~~~v~~~~~~~~~~~~D~ 86 (380)
T cd08185 12 GKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFD---KVE--PNPTTTTVMEGAALAREEGCDF 86 (380)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeC---Ccc--CCCCHHHHHHHHHHHHHcCCCE
Confidence 456666666654 488999998876 346777888888888888664211 111 13322111 111222 36999
Q ss_pred EEEecC
Q 011590 281 ALVVGA 286 (482)
Q Consensus 281 vl~iG~ 286 (482)
||.||.
T Consensus 87 IiavGG 92 (380)
T cd08185 87 VVGLGG 92 (380)
T ss_pred EEEeCC
Confidence 999994
No 396
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=49.53 E-value=16 Score=42.19 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCcEeeCCCCCCCCCCC---CCcccchH----HHHhhhcCCEEEEecCccCcccccC--CC-CCCCCCCcE
Q 011590 237 ELKKLVESTGIPFLPTPMGKGLLPDT---HPLAATAA----RSLAIGQCDVALVVGARLNWLLHFG--EP-PKWSKDVKF 306 (482)
Q Consensus 237 ~l~~lae~~g~pv~~t~~~~g~~~~~---hp~~~G~~----~~~~l~~aDlvl~iG~~~~~~~~~g--~~-~~~~~~~~i 306 (482)
.+.+|+..+|.+-+.... +-+.... ....+|.. ...=+++||+||++|+++.+..... +. ..-..++|+
T Consensus 175 l~~kf~r~lGt~n~~~~~-~~C~~~~~~al~~~~G~~~~~~~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~Gaki 253 (1009)
T TIGR01553 175 LYQKWLRSLGLFYIEHQA-RIUHSPTVASLAPSFGRGAMTNNWVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKI 253 (1009)
T ss_pred HHHHHHHHhCCCcccCcc-cccccHHHHHHHHhhcCCCCCCCHHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEE
Confidence 468999999986553321 1111000 01112221 1123678999999999886432111 11 001356899
Q ss_pred EEEeCCchhh
Q 011590 307 VLVDVCKEEI 316 (482)
Q Consensus 307 i~id~d~~~~ 316 (482)
|.||+.....
T Consensus 254 IvIDPR~t~t 263 (1009)
T TIGR01553 254 IHIDPRFNRT 263 (1009)
T ss_pred EEEcCCCCch
Confidence 9999865433
No 397
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.16 E-value=49 Score=33.53 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc--hHHHHhh-hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT--AARSLAI-GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G--~~~~~~l-~~aDl 280 (482)
..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+..-. + + +.||-.-. .....+. .++|+
T Consensus 12 g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~---~-v-~~~p~~~~v~~~~~~~~~~~~d~ 86 (374)
T cd08189 12 GSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYD---G-V-PPDPTIENVEAGLALYRENGCDA 86 (374)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeC---C-C-CCCcCHHHHHHHHHHHHhcCCCE
Confidence 456666666654 478888888887655666778887787787654211 1 1 12332211 1112222 47999
Q ss_pred EEEecC
Q 011590 281 ALVVGA 286 (482)
Q Consensus 281 vl~iG~ 286 (482)
||.||.
T Consensus 87 IIaiGG 92 (374)
T cd08189 87 ILAVGG 92 (374)
T ss_pred EEEeCC
Confidence 999993
No 398
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.80 E-value=53 Score=32.46 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCccc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~ 267 (482)
+....++++.|...++..+++|... +.....+..++++.++|++........+++..|+++
T Consensus 52 p~~a~~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~f 112 (344)
T cd06348 52 EAEAINAFQTLINKDRVLAIIGPTL--SQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPYVF 112 (344)
T ss_pred hHHHHHHHHHHhhhcCceEEECCCC--cHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCeEE
Confidence 3444444455555578899999764 445566778999999999976544333455555554
No 399
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=48.67 E-value=51 Score=33.80 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aDl 280 (482)
..++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..-. ++ ..+|-.--. .+.+.. .++|+
T Consensus 35 g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~---~v--~~~P~~~~v~~~~~~~r~~~~D~ 109 (395)
T PRK15454 35 GAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWP---CP--VGEPCITDVCAAVAQLRESGCDG 109 (395)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEEC---CC--CCCcCHHHHHHHHHHHHhcCcCE
Confidence 456667666655 477777777776666777788888888888654211 11 112322111 111222 47999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
||.||
T Consensus 110 IiavG 114 (395)
T PRK15454 110 VIAFG 114 (395)
T ss_pred EEEeC
Confidence 99999
No 400
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=48.65 E-value=31 Score=35.33 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hcCCEEEE
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQCDVALV 283 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~aDlvl~ 283 (482)
.++++...+...+|++|+.|......+..+.+.+..+..|+.+..-. + + +.+|-.-.. ....+. .++|+||.
T Consensus 10 ~~~~l~~~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~---~-v-~~~p~~~~v~~~~~~~~~~~~D~IIa 84 (398)
T cd08178 10 SLPYALLDLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFS---D-V-EPDPSLETVRKGLELMNSFKPDTIIA 84 (398)
T ss_pred HHHHHHHHhcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEec---C-C-CCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 34555545556789999998877666677788888888887654211 1 1 123322111 112222 36999999
Q ss_pred ecC
Q 011590 284 VGA 286 (482)
Q Consensus 284 iG~ 286 (482)
||.
T Consensus 85 iGG 87 (398)
T cd08178 85 LGG 87 (398)
T ss_pred eCC
Confidence 994
No 401
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=48.51 E-value=63 Score=27.59 Aligned_cols=43 Identities=16% Similarity=-0.085 Sum_probs=20.3
Q ss_pred hHHHHHHHhhhCCCCcEEEEE-cchhccCChHHHHHHHHcCccccc
Q 011590 437 GLGYCIAAAIACPERLVVAVE-GDSGFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 437 ~l~~AiGaala~p~~~vi~~~-GDGsf~~~~~eL~T~~r~~l~i~~ 481 (482)
+...|.|.+.+.. +.++..+ |.|. ......|.++...++|++.
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~-~~~~~~l~~a~~~~~Pvl~ 90 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGL-LNAINGLADAAAEHLPVVF 90 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcH-HHHHHHHHHHHhcCCCEEE
Confidence 4445555555442 3434444 4443 2333445555555566554
No 402
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=48.43 E-value=3.6 Score=39.41 Aligned_cols=145 Identities=15% Similarity=0.064 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChHH-HHHHHHhCCCcEEecC----------chHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVTS-LANRAVQLGVRFIAFH----------NEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~-l~~al~~~~i~~v~~~----------~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
..+.++-+.+.|.+.|.-.=++..+. |.-...+...++|.-. +|..-+.+=.||--..|.+..++.|+-
T Consensus 39 vnAaiega~~aGa~eVvV~DsHg~~~Nl~~~~L~~~~~LI~G~~rp~~Mm~Gld~~~Dav~fiGYHa~aGt~~gvL~HT~ 118 (265)
T PF04951_consen 39 VNAAIEGAFEAGATEVVVNDSHGSMRNLLPEELPPRARLIRGSPRPLSMMEGLDESFDAVFFIGYHARAGTPRGVLAHTY 118 (265)
T ss_dssp HHHHHHHHHHTT-SEEEEEE-STTS--S-TTTS-TTSEEEEES--TTGGGTT--TT-SEEEEEEE---TTS-SSTT--SS
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCCCCcChHHCCcCeEEEeCCCCcchhhhccccCcCEEEEEecCcccCCCCcccccee
Confidence 45678888899999998887754433 2211123456666531 111111111233333343333344433
Q ss_pred hhhH------------hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590 86 PGCV------------HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ 153 (482)
Q Consensus 86 pG~~------------N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~ 153 (482)
.|.. -..-.-+-|-.-++||+++||+.......+.-+..+-....-+.+..++..-.+|+.+.+.|++
T Consensus 119 ~~~~i~~v~iNG~~~gE~~lna~~Ag~~GVPV~lVsGD~~l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~ 198 (265)
T PF04951_consen 119 SGSVIHEVRINGREVGEFGLNAALAGYYGVPVVLVSGDDALCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIRE 198 (265)
T ss_dssp STTE-EEEEETTEEE-HHHHHHHHHHHTT--EEEEEEEHHHHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHH
T ss_pred ccccceeEEECCEEcchhHHHHHHHhhcCCcEEEEeCcHHHHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHH
Confidence 3322 2233344566679999999998755433333233333333445577788888899999999999
Q ss_pred HHHHhhcC
Q 011590 154 VLERAVSG 161 (482)
Q Consensus 154 A~~~a~~~ 161 (482)
+.+.|+..
T Consensus 199 ~a~~Al~~ 206 (265)
T PF04951_consen 199 AAKEALER 206 (265)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99999753
No 403
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=48.39 E-value=59 Score=32.90 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHh-hhcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLA-IGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~-l~~aDl 280 (482)
..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+..- . + + +.||-.-.. ....+ -.++|+
T Consensus 10 g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~-~--~-v-~~~p~~~~v~~~~~~~~~~~~d~ 84 (370)
T cd08192 10 GAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALF-D--E-V-PPNPTEAAVEAGLAAYRAGGCDG 84 (370)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEe-C--C-C-CCCCCHHHHHHHHHHHHhcCCCE
Confidence 456667666665 47999999988765566777888777777765321 1 1 1 233432211 11112 246999
Q ss_pred EEEecC
Q 011590 281 ALVVGA 286 (482)
Q Consensus 281 vl~iG~ 286 (482)
||.||.
T Consensus 85 IIaiGG 90 (370)
T cd08192 85 VIAFGG 90 (370)
T ss_pred EEEeCC
Confidence 999993
No 404
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=47.99 E-value=2.4e+02 Score=26.45 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=82.7
Q ss_pred CCcEEEEEcCChhhHhhHHHHHHhhh-CCCcEEEEeCCCCcccCCCCCCCCcCH------hhhhccc-----cceeeecC
Q 011590 75 GKPGILLTVSGPGCVHGLAGLSNGMI-NTWPIVMISGSCDQKDFGRGDFQELDQ------VEAVKPF-----SKFAVKAK 142 (482)
Q Consensus 75 gk~~v~~~t~GpG~~N~~~ai~~A~~-~~~Pvl~i~g~~~~~~~~~~~~q~~d~------~~~~~~~-----~k~~~~~~ 142 (482)
.|.=+|-.-+.-|++-....+..|.. ..+|+-.+.-=+. |.--+.+-+. ..+++.. +--+-+.
T Consensus 23 dRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRg----GdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~- 97 (241)
T COG3142 23 DRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRG----GDFVYSDDELEIMLEDIRLARELGVQGVVLGALTA- 97 (241)
T ss_pred ceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCC----CCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecC-
Confidence 45667777777789999999999777 8999988873221 1111221111 1122221 1111111
Q ss_pred CcCcHHH-HHHHHHHHhhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhccccc---CCCCCHHHHHHHHHHHHhC
Q 011590 143 DITEVPK-CVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVT---QGGIVNSDIDKAVSLLKEA 218 (482)
Q Consensus 143 ~~~~~~~-~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~a 218 (482)
...+.. .+++=+..| .+ -+|..---+|.... +...+...... ...+.. ......+.++.+.+++..+
T Consensus 98 -dg~iD~~~le~Li~aA-~g--L~vTFHrAFD~~~d--~~~ale~li~~---Gv~RILTsGg~~sa~eg~~~l~~li~~a 168 (241)
T COG3142 98 -DGNIDMPRLEKLIEAA-GG--LGVTFHRAFDECPD--PLEALEQLIEL---GVERILTSGGKASALEGLDLLKRLIEQA 168 (241)
T ss_pred -CCccCHHHHHHHHHHc-cC--CceeeehhhhhcCC--HHHHHHHHHHC---CCcEEecCCCcCchhhhHHHHHHHHHHh
Confidence 111211 112222222 11 33444444444333 11122222110 011111 1223345678888888876
Q ss_pred -CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 219 -KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 219 -~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.|+.|++|+|++ .+.+..|.+++|+--++..
T Consensus 169 ~gri~Im~GaGV~----~~N~~~l~~~tg~~e~H~s 200 (241)
T COG3142 169 KGRIIIMAGAGVR----AENIAELVLLTGVTEVHGS 200 (241)
T ss_pred cCCEEEEeCCCCC----HHHHHHHHHhcCchhhhhc
Confidence 899999999984 5678899999998655433
No 405
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=47.92 E-value=49 Score=33.59 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc--hHHHHh-hhcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT--AARSLA-IGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G--~~~~~~-l~~aDl 280 (482)
..++++.+.+++ .+|++|+.|......+..+.+.+..+..|+.+..-. + + +.+|-.-. .....+ -.++|+
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~-~---v-~~~p~~~~v~~~~~~~~~~~~D~ 83 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFD-D---V-VSEPTDESVEEGVKLAKEGGCDV 83 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEEC-C---C-CCCcCHHHHHHHHHHHHhcCCCE
Confidence 456677776663 589999999887655667778888888787654211 1 1 12333211 112222 247999
Q ss_pred EEEecC
Q 011590 281 ALVVGA 286 (482)
Q Consensus 281 vl~iG~ 286 (482)
||.||.
T Consensus 84 IIaiGG 89 (375)
T cd08194 84 IIALGG 89 (375)
T ss_pred EEEeCC
Confidence 999994
No 406
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=47.66 E-value=47 Score=32.60 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhh-hcCCEEEEecCcc
Q 011590 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAI-GQCDVALVVGARL 288 (482)
Q Consensus 237 ~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l-~~aDlvl~iG~~~ 288 (482)
....+||.+++||++|+.|. +.++ .-.+.+ .+.|+||.||...
T Consensus 43 lA~~iaellNA~Vlttpwg~--ynes-------~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 43 LALPIAELLNAPVLTTPWGI--YNES-------VLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred HhhHHHHHhCCeeEecCccc--ccHH-------HHHHHHhhCCceEEEECCCC
Confidence 35789999999999888542 2111 112333 4799999999665
No 407
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=47.27 E-value=19 Score=36.42 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=41.8
Q ss_pred hcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 276 GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 276 ~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
.++||+|++|+++-......-...++.....|.|+.++.. ....++.+.+|-..+...+.....
T Consensus 279 d~~DllIviGTSLKV~pV~~iv~~~~~~vpqIliNr~~v~--h~efd~~ll~~CD~v~~~l~~~~g 342 (412)
T KOG2684|consen 279 DECDLLIVIGTSLKVRPVAEIVKSFPAKVPQILINRDPVP--HAEFDVELLGDCDDVIRLLCQKCG 342 (412)
T ss_pred cccceEEEeCCccccccHHHHHhhhcccCcEEEecCcccc--ccccChhhccchHHHHHHHHhhcc
Confidence 4579999999998654332223345666677777776422 223466777788888887777654
No 408
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=46.83 E-value=91 Score=28.65 Aligned_cols=95 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHH---hCCcEeeCCCCCCCCCCCCCcccc-----hHHHHhhhc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES---TGIPFLPTPMGKGLLPDTHPLAAT-----AARSLAIGQ 277 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~---~g~pv~~t~~~~g~~~~~hp~~~G-----~~~~~~l~~ 277 (482)
+.+.++.++|.+.++-|++.|-| ...-.-++||-+ +|.|++ |+| .-.--+++.
T Consensus 26 ~~~~~a~~~i~~~~gkv~V~G~G----kSG~Igkk~Aa~L~s~G~~a~---------------fv~p~ea~hgdlg~i~~ 86 (202)
T COG0794 26 EDFVRAVELILECKGKVFVTGVG----KSGLIGKKFAARLASTGTPAF---------------FVGPAEALHGDLGMITP 86 (202)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCC----hhHHHHHHHHHHHHccCCceE---------------EecCchhccCCccCCCC
Q ss_pred CCEEEEecCccCcccccCCCCCC--------CCCCcEEEEeCCchhhcccCCceeEe
Q 011590 278 CDVALVVGARLNWLLHFGEPPKW--------SKDVKFVLVDVCKEEIELRKPHLGLV 326 (482)
Q Consensus 278 aDlvl~iG~~~~~~~~~g~~~~~--------~~~~~ii~id~d~~~~~~~~~~~~i~ 326 (482)
=|+||+| ..+|..... ..+.++|-|.-+|+..-....|+.+.
T Consensus 87 ~Dvviai-------S~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 87 GDVVIAI-------SGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred CCEEEEE-------eCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
No 409
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=46.78 E-value=1.3e+02 Score=28.72 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=60.9
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC---C-----CcEEecCchH-----------HHH-HHHHHHHhHh
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL---G-----VRFIAFHNEQ-----------SAG-YAASAYGYLT 74 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~---~-----i~~v~~~~E~-----------~A~-~~A~g~ar~t 74 (482)
...+.+++.|++.|-=++||.-.+......|+.+.. + +..+..-.+. ... ++.+=.+..-
T Consensus 37 ~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l 116 (257)
T cd05007 37 RAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINL 116 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCC
Confidence 467889999999998888998888887877775421 2 2222222211 110 1111111111
Q ss_pred CCcEEEEEcCChhh-HhhHHHHHHhhhCCCcEEEEeCCCCcc
Q 011590 75 GKPGILLTVSGPGC-VHGLAGLSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 75 gk~~v~~~t~GpG~-~N~~~ai~~A~~~~~Pvl~i~g~~~~~ 115 (482)
++--++++.|..|- -..+.++..|...+.|++.||+.....
T Consensus 117 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 117 TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 23335555555554 455567777999999999999877544
No 410
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=46.40 E-value=22 Score=28.68 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=25.1
Q ss_pred HHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 213 SLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 213 ~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
..+...-+-+|++|+. ...+.+.++|+..++||+.|+..
T Consensus 56 ~a~~~~i~~iIltg~~----~~~~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 56 AAIEAGIACIILTGGL----EPSEEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp HHCCTTECEEEEETT--------HHHHHHHHHHT-EEEE-SS-
T ss_pred HHHHhCCCEEEEeCCC----CCCHHHHHHHHHCCCEEEEECCC
Confidence 3444445788888855 45678999999999999988753
No 411
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.34 E-value=55 Score=32.21 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G 268 (482)
+++.-.++++.|.+.++..+++|... +.....+..++++.++|+++.......+.+.+|+++.
T Consensus 50 ~p~~a~~~a~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~ip~i~~~a~~~~lt~~~~~~fr 112 (332)
T cd06344 50 DPEIAKKVADELVKDPEILGVVGHYS--SDATLAALDIYQKAKLVLISPTSTSVKLSNPGPYFFR 112 (332)
T ss_pred ChHHHHHHHHHHhcccCceEEEcCCC--cHHHHHHHHHHhhcCceEEccCcCchhhcCCCCcEEE
Confidence 34444455666666678889998653 4566678899999999999755433334345666654
No 412
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=46.20 E-value=62 Score=32.88 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHh-hhcCC
Q 011590 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLA-IGQCD 279 (482)
Q Consensus 205 ~~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~-l~~aD 279 (482)
+..++++.+.+.+ .+|++|+.|......+..+.+.+..+..|+.+..- . +.-+ +|-.-.. ....+ -.++|
T Consensus 13 ~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~-~--~v~~--~p~~~~v~~~~~~~~~~~~d 87 (377)
T cd08188 13 RGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVF-S--DVSP--NPRDEEVMAGAELYLENGCD 87 (377)
T ss_pred cCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEe-C--CCCC--CCCHHHHHHHHHHHHhcCCC
Confidence 3456677666665 48999999987765566777888778777765421 1 1111 3322111 11122 24799
Q ss_pred EEEEecC
Q 011590 280 VALVVGA 286 (482)
Q Consensus 280 lvl~iG~ 286 (482)
+||.||.
T Consensus 88 ~IIaiGG 94 (377)
T cd08188 88 VIIAVGG 94 (377)
T ss_pred EEEEeCC
Confidence 9999993
No 413
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=45.82 E-value=13 Score=35.61 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=31.5
Q ss_pred CCcccchHHHHHHHhhhCC---------CCcEEEEEcchhcc--CChHHHHHHHH-cCcc
Q 011590 431 WGTMGVGLGYCIAAAIACP---------ERLVVAVEGDSGFG--FSAVEVEVWLS-CIIM 478 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p---------~~~vi~~~GDGsf~--~~~~eL~T~~r-~~l~ 478 (482)
-+.+|...|-|.|+++|.. +.-+|++.|||+|. =...|-.++++ .++|
T Consensus 112 pS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp 171 (265)
T cd02016 112 PSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYT 171 (265)
T ss_pred CcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCC
Confidence 4678888888888888741 45678999999973 33344333332 3454
No 414
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=45.50 E-value=1.7e+02 Score=33.19 Aligned_cols=171 Identities=15% Similarity=0.116 Sum_probs=93.0
Q ss_pred chHHH--HHHHHHHHhH-hCCcEEEEEc--CChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhcc
Q 011590 59 NEQSA--GYAASAYGYL-TGKPGILLTV--SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133 (482)
Q Consensus 59 ~E~~A--~~~A~g~ar~-tgk~~v~~~t--~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~ 133 (482)
+|.++ .+.|.|-++. .|.|.+=+-+ +-=|+.=..-.+-.|-..+..-+++.+.........+.+|..|..+..-.
T Consensus 567 ~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~ 646 (885)
T TIGR00759 567 NEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLCWAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQA 646 (885)
T ss_pred hhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHHHHHhhhcCCceEeccCCCcccCCCccccCccccchHHH
Confidence 44443 4555666663 3555543333 22244444445555555566666666666554555555565554332222
Q ss_pred cc---ceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHH
Q 011590 134 FS---KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDK 210 (482)
Q Consensus 134 ~~---k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (482)
.+ .-++.+.-..++...+..+++.+.... .-||.-|.. .++.++.+ ..+...++.+-+
T Consensus 647 ~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~-~~v~yylt~--~ne~~~qp----------------~~p~~~~egIlk 707 (885)
T TIGR00759 647 ATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQ-EDVFYYVTV--MNENYVQP----------------PMPEGAEEGILK 707 (885)
T ss_pred hcCCCceeecCchHHHHHHHHHHHHHHHhhCC-CCEEEEEEe--cCCCCCCC----------------CCCcchHHhHHh
Confidence 11 235556566789999999999998753 556665543 22222211 111111111111
Q ss_pred HHHHHHhCC-----CCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 211 AVSLLKEAK-----KPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 211 ~~~~L~~a~-----rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
=.-.|..++ .-|.|+|+|+....+.++-..|++.+|+.
T Consensus 708 G~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~ 750 (885)
T TIGR00759 708 GLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVA 750 (885)
T ss_pred CceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCC
Confidence 122333321 24999999998778888889999988765
No 415
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=45.27 E-value=2.2e+02 Score=25.29 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=69.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC--hHHHHHHHH------hCCCcEEecCchH-HHHHHHHHHH------h---HhC
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP--VTSLANRAV------QLGVRFIAFHNEQ-SAGYAASAYG------Y---LTG 75 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~--~~~l~~al~------~~~i~~v~~~~E~-~A~~~A~g~a------r---~tg 75 (482)
...++.+++.|++-|=--+||+-|+. ..+|...|. ++++..|...-+. .-..++.=|. | +.|
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~vFsRqveA~g 107 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEVFSRQVEALG 107 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHHHHHHHHhcC
Confidence 35789999999999988999999975 345655542 3456666554333 2233333232 2 456
Q ss_pred CcE---EEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 76 KPG---ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 76 k~~---v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
++| +.+-||| -..|.+.|+-.|..-..-+|.+||...
T Consensus 108 ~~GDvLigISTSG-NS~nVl~Ai~~Ak~~gm~vI~ltG~~G 147 (176)
T COG0279 108 QPGDVLIGISTSG-NSKNVLKAIEAAKEKGMTVIALTGKDG 147 (176)
T ss_pred CCCCEEEEEeCCC-CCHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 666 5566777 578999999999999999999999763
No 416
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=45.18 E-value=27 Score=39.36 Aligned_cols=109 Identities=11% Similarity=0.008 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH-HhCCcEeeCCCCCCCCCCC----CCcccchH---HHHhhh
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE-STGIPFLPTPMGKGLLPDT----HPLAATAA---RSLAIG 276 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae-~~g~pv~~t~~~~g~~~~~----hp~~~G~~---~~~~l~ 276 (482)
+++++.+++.|++.+..+-+.+++-...+..-.+.+|++ .+|.+-+... ++..-+.. .++..|.. ...-++
T Consensus 297 dEAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~-~r~~~~~~~~~~~~~~~g~~~~~~~~Die 375 (797)
T PRK07860 297 SEALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFR-ARPHSAEEADFLAARVAGRGLGVTYADLE 375 (797)
T ss_pred HHHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccc-cccccchHHHHHHhhccCCCCCCCHHHHH
Confidence 567788888888876655444433221122223577876 5776654221 11100000 01112211 123467
Q ss_pred cCCEEEEecCccCccccc--CCCC-CC-CCCCcEEEEeCCch
Q 011590 277 QCDVALVVGARLNWLLHF--GEPP-KW-SKDVKFVLVDVCKE 314 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~--g~~~-~~-~~~~~ii~id~d~~ 314 (482)
++|+||++|+++.+..+- .+.. .. ..++|+|.||+-..
T Consensus 376 ~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t 417 (797)
T PRK07860 376 KAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFAT 417 (797)
T ss_pred hCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 999999999987652211 1111 11 24689999988543
No 417
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=45.15 E-value=33 Score=34.42 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=40.6
Q ss_pred HHHHHHHHHHh-CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcc--cchHHHHhh-hcCCEEE
Q 011590 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA--ATAARSLAI-GQCDVAL 282 (482)
Q Consensus 207 ~~~~~~~~L~~-a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~--~G~~~~~~l-~~aDlvl 282 (482)
.++++.+.+++ .+|++|+.|..... +..+.+.+..+..|+.+.... +.. +|-. +......+- .++|+||
T Consensus 10 ~~~~l~~~~~~~~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~~~~-----~~~-~p~~~~v~~~~~~~~~~~~D~II 82 (351)
T cd08170 10 ALDELGEYLARLGKRALIIADEFVLD-LVGAKIEESLAAAGIDARFEV-----FGG-ECTRAEIERLAEIARDNGADVVI 82 (351)
T ss_pred HHHHHHHHHHHhCCeEEEEECHHHHH-HHHHHHHHHHHhCCCeEEEEE-----eCC-cCCHHHHHHHHHHHhhcCCCEEE
Confidence 44555555544 58999999877754 566667777777777653111 111 1211 111111222 3799999
Q ss_pred Eec
Q 011590 283 VVG 285 (482)
Q Consensus 283 ~iG 285 (482)
+||
T Consensus 83 avG 85 (351)
T cd08170 83 GIG 85 (351)
T ss_pred Eec
Confidence 999
No 418
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=44.99 E-value=69 Score=30.79 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
.+.+.+++++++|.+|+| +.++|.|... ...+.+.....++|.++... ++.|.+ ......+.+-|++|
T Consensus 113 ~~~~~l~~~~~~i~~a~~-I~i~G~G~s~-~~A~~~~~~l~~~g~~~~~~-------~d~~~~---~~~~~~~~~~Dv~I 180 (278)
T PRK11557 113 NSEEKLHECVTMLRSARR-IILTGIGASG-LVAQNFAWKLMKIGINAVAE-------RDMHAL---LATVQALSPDDLLL 180 (278)
T ss_pred cCHHHHHHHHHHHhcCCe-EEEEecChhH-HHHHHHHHHHhhCCCeEEEc-------CChHHH---HHHHHhCCCCCEEE
Confidence 456889999999999987 8888887532 33444444445666666531 111111 01123467889999
Q ss_pred EecCccCcccccCCCCCC-CCCCcEEEEeCCchh
Q 011590 283 VVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEE 315 (482)
Q Consensus 283 ~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~ 315 (482)
++..+-.....-...... ..++++|.|...+..
T Consensus 181 ~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 181 AISYSGERRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred EEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 995332211000000001 357889888776543
No 419
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=44.80 E-value=66 Score=32.49 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~aDl 280 (482)
..++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..-. + -+.||-.-.. ....+. .++|+
T Consensus 9 g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~---~--~~~~p~~~~v~~~~~~~~~~~~d~ 83 (370)
T cd08551 9 GAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFD---G--VEPNPTLSNVDAAVAAYREEGCDG 83 (370)
T ss_pred CHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEEC---C--CCCCCCHHHHHHHHHHHHhcCCCE
Confidence 456777777765 489999999877655677778777777777553211 0 1223433221 122222 36899
Q ss_pred EEEecC
Q 011590 281 ALVVGA 286 (482)
Q Consensus 281 vl~iG~ 286 (482)
||.||.
T Consensus 84 IiaiGG 89 (370)
T cd08551 84 VIAVGG 89 (370)
T ss_pred EEEeCC
Confidence 999994
No 420
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=44.71 E-value=97 Score=30.28 Aligned_cols=156 Identities=16% Similarity=0.080 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh---CCCcE-----Eec------------Cc-hHHHHHHHHHHHhH
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---LGVRF-----IAF------------HN-EQSAGYAASAYGYL 73 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~---~~i~~-----v~~------------~~-E~~A~~~A~g~ar~ 73 (482)
...+.+++.|++-|-=++||+-++......|+.+- -+... +.. .| ....+.........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 35778889999999888999988877666775331 12111 000 01 01111111111112
Q ss_pred hCCcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhc-cccceeeecCCcCcHHHHH
Q 011590 74 TGKPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK-PFSKFAVKAKDITEVPKCV 151 (482)
Q Consensus 74 tgk~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~-~~~k~~~~~~~~~~~~~~l 151 (482)
+-+ -++++.|..| .-+.+.++..|...+.|++.||+.+....... .++...-... .....+.+.. .......+
T Consensus 125 ~~~-DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~---aD~~I~~~~g~E~~~~st~~~-s~~aqk~i 199 (291)
T TIGR00274 125 TKN-DVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEI---ADIAIETIVGPEILTGSSRLK-AGTAQKMV 199 (291)
T ss_pred CCC-CEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHh---CCEEEecCCCCccccccchhh-HHHHHHHH
Confidence 222 2333333444 45566788889999999999998664332111 1110000000 0000111111 12233334
Q ss_pred HHHHHHhhcCCCceEEEEcCcchh
Q 011590 152 AQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 152 ~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
-..+..+..-+.|.+|=+.-.|+.
T Consensus 200 Ld~L~t~~~~~~gk~~~n~mvd~~ 223 (291)
T TIGR00274 200 LNMLSTASMIKLGKVYENLMVDVQ 223 (291)
T ss_pred HHHHHHHHHHhcchhhcCeEEeee
Confidence 455555555566888888888875
No 421
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=44.70 E-value=80 Score=27.83 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCE--EEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC
Q 011590 201 GGIVNSDIDKAVSLLKEAKKPL--IVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261 (482)
Q Consensus 201 ~~~~~~~~~~~~~~L~~a~rpv--il~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~ 261 (482)
|-..++.+.++.+....-.|.- +++|+..- ..-.+++.+|-|.+|+||+.-.+ .|.+|+
T Consensus 122 PlVGEE~laEAVkAV~rLpRv~iLVLAGslMG-GkIteaVk~lr~~hgI~VISL~M-~GSVpd 182 (218)
T COG1707 122 PLVGEEELAEAVKAVARLPRVGILVLAGSLMG-GKITEAVKELREEHGIPVISLNM-FGSVPD 182 (218)
T ss_pred cccChHHHHHHHHHHhccccceeEEEeccccc-chHHHHHHHHHHhcCCeEEEecc-CCCCcc
Confidence 3445677777777766655554 44454432 34567899999999999995443 355666
No 422
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.44 E-value=64 Score=28.31 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCEEEEcCCcccc----ccHHHHHHHHHHhCCcEeeCCCCCC
Q 011590 220 KPLIVFGKGAAYA----RAEGELKKLVESTGIPFLPTPMGKG 257 (482)
Q Consensus 220 rpvil~G~g~~~~----~~~~~l~~lae~~g~pv~~t~~~~g 257 (482)
.-++++|..+... -..+...+||+++|+|.+.|....|
T Consensus 125 PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 125 PDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred CCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 3477788776432 2346789999999999998877655
No 423
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.41 E-value=45 Score=27.56 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEec
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAF 57 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~ 57 (482)
...+++.+.+.|++.+...||.....+.+.+++.|++++..
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 44567788888999999999998889999888899998853
No 424
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=44.37 E-value=75 Score=26.47 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
++..+.+..+.|.+++=--+.++.+--...-.+.+.++|++++.|++.-+
T Consensus 57 ~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 57 DEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIP 106 (123)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeC
Confidence 34557788888887766666665553334566889999999999999633
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.28 E-value=61 Score=33.57 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
....+++..+.+..+.+.++....-+.++.+.++.++++.++|++...
T Consensus 115 TtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 115 TTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSY 162 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeec
Confidence 466777777777666666666677677899999999999999998533
No 426
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=44.08 E-value=65 Score=32.65 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=41.1
Q ss_pred HHHHHHHHHHh-CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhh--hcCCEEE
Q 011590 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAI--GQCDVAL 282 (482)
Q Consensus 207 ~~~~~~~~L~~-a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l--~~aDlvl 282 (482)
.++++.+.+++ .+|++|+.|.... ..+.+.+..+..|+.+..-. ..+ +|-.-.. ...... .++|+||
T Consensus 10 ~~~~l~~~l~~~~~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~~----~~~--~p~~~~v~~~~~~~~~~~~D~II 80 (374)
T cd08183 10 VAKELPALAAELGRRVLLVTGASSL---RAAWLIEALRAAGIEVTHVV----VAG--EPSVELVDAAVAEARNAGCDVVI 80 (374)
T ss_pred HHHHHHHHHHHcCCcEEEEECCchH---HHHHHHHHHHHcCCeEEEec----CCC--CcCHHHHHHHHHHHHhcCCCEEE
Confidence 45556565554 5899999998764 55667777777787654311 112 3322111 111222 3699999
Q ss_pred Eec
Q 011590 283 VVG 285 (482)
Q Consensus 283 ~iG 285 (482)
.||
T Consensus 81 aiG 83 (374)
T cd08183 81 AIG 83 (374)
T ss_pred Eec
Confidence 999
No 427
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=43.88 E-value=34 Score=36.59 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccc-cccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCcccchH---HH
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAATAA---RS 272 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~-~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~~~G~~---~~ 272 (482)
+++++.+++.|++ .+...++.|++... .........|...+|.+-+.+...-...+. .....+|.. ..
T Consensus 72 deAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 151 (539)
T cd02762 72 DEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSAATADQKPGHFWSGLMFGHPGLHPV 151 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccccchhhhHHHHHHHHhcCCCCCCCc
Q ss_pred HhhhcCCEEEEecCccCcccccCCC---------CCCCCCCcEEEEeC
Q 011590 273 LAIGQCDVALVVGARLNWLLHFGEP---------PKWSKDVKFVLVDV 311 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~~g~~---------~~~~~~~~ii~id~ 311 (482)
.-+++||+||++|+++.+....... ..-..++|+|.||+
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDP 199 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDP 199 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECC
No 428
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=43.77 E-value=69 Score=32.60 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh-CCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCcccch-HHHHhh--hcC
Q 011590 206 SDIDKAVSLLKE-AKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAATA-ARSLAI--GQC 278 (482)
Q Consensus 206 ~~~~~~~~~L~~-a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~~~G~-~~~~~l--~~a 278 (482)
..++++.+.+++ .+|++|+.|.... ..+..+.+.+..+..|+.+.. |+. .||-.-.. .+...+ .++
T Consensus 15 g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~-------~~~v~~~p~~~~v~~~~~~~~~~~~ 87 (382)
T cd08187 15 GTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVE-------LGGVEPNPRLETVREGIELCKEEKV 87 (382)
T ss_pred CHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEE-------ECCccCCCCHHHHHHHHHHHHHcCC
Confidence 345555555544 5899999886543 345567777777777775532 221 23322111 111222 469
Q ss_pred CEEEEecC
Q 011590 279 DVALVVGA 286 (482)
Q Consensus 279 Dlvl~iG~ 286 (482)
|+||.||.
T Consensus 88 D~IIaiGG 95 (382)
T cd08187 88 DFILAVGG 95 (382)
T ss_pred CEEEEeCC
Confidence 99999993
No 429
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=43.75 E-value=33 Score=27.22 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCCEEEEcCCccccc-cHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEec
Q 011590 219 KKPLIVFGKGAAYAR-AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (482)
Q Consensus 219 ~rpvil~G~g~~~~~-~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (482)
.|.+..+|.|...|- ....++++++.+|+|+-.+....+.++. ....+|+++..-
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~------------~~~~aDiiv~s~ 57 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA------------LTDGADIIVTST 57 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc------------CCCcccEEEEeh
Confidence 467889999998773 4567999999999996554444443322 344678888774
No 430
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=43.23 E-value=1e+02 Score=33.21 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=63.5
Q ss_pred HHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCC---------cccCCC---C-CCCCcCHhhhhcc
Q 011590 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCD---------QKDFGR---G-DFQELDQVEAVKP 133 (482)
Q Consensus 67 A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~---------~~~~~~---~-~~q~~d~~~~~~~ 133 (482)
|.|.+..+.|..+++.--|.=.=|.+++|.+|-.++.+++++.-+.. ....+. + ....++...+.|.
T Consensus 437 a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~ 516 (640)
T COG4231 437 AGGLSFASTKKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRA 516 (640)
T ss_pred ccccccccCCceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhh
Confidence 44555445566666665555566778899999999999998765443 221111 1 1234566777777
Q ss_pred ccc-eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 134 FSK-FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 134 ~~k-~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
+.. |...+. +-++.+. .++++.|+.-+ ||..|..-
T Consensus 517 ~Gv~~v~~vd-p~~~~~~-~~~~keale~~-gpsViiak 552 (640)
T COG4231 517 MGVEDVETVD-PYDVKEL-SEAIKEALEVP-GPSVIIAK 552 (640)
T ss_pred cCceeeeccC-CcchHHH-HHHHHHHhcCC-CceEEEEc
Confidence 644 444443 6555444 67888887754 77776544
No 431
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=42.89 E-value=55 Score=31.76 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEE
Q 011590 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVA 281 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlv 281 (482)
..+++.+++++++|.+|+|..++. .|.. .-....+..-..++|.++... +..|-.. .....+.+-|++
T Consensus 114 ~l~~~~l~~av~~L~~A~rI~~~G-~g~S-~~vA~~~~~~l~~ig~~~~~~-------~d~~~~~---~~~~~~~~~Dv~ 181 (281)
T COG1737 114 LLDEEALERAVELLAKARRIYFFG-LGSS-GLVASDLAYKLMRIGLNVVAL-------SDTHGQL---MQLALLTPGDVV 181 (281)
T ss_pred hcCHHHHHHHHHHHHcCCeEEEEE-echh-HHHHHHHHHHHHHcCCceeEe-------cchHHHH---HHHHhCCCCCEE
Confidence 457789999999999998776665 4432 234556666667788887642 2222111 123456788999
Q ss_pred EEecCccCcccccCCCCCC-CCCCcEEEEeCCch
Q 011590 282 LVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKE 314 (482)
Q Consensus 282 l~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~ 314 (482)
|+|..+-.....-.-.... ..++++|.|.....
T Consensus 182 i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~ 215 (281)
T COG1737 182 IAISFSGYTREIVEAAELAKERGAKVIAITDSAD 215 (281)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 9996443211100000000 35688988877643
No 432
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=42.78 E-value=2.6e+02 Score=30.55 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=79.6
Q ss_pred HHHHHHHHhcCCCEEEecCC----cChHHHHHHHHhCCCcEEecCchHHHHH----HHHHHHhHhCCcEEEEEcCChhhH
Q 011590 18 TLAAKSLSLFGATHMFGVVG----IPVTSLANRAVQLGVRFIAFHNEQSAGY----AASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG----~~~~~l~~al~~~~i~~v~~~~E~~A~~----~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
+-|++..++++|+.| -|| +...++.+++.+.|++||...-|-...+ +|-..+-..|-| ++=.|-|| .+
T Consensus 96 deii~iak~~~vdav--HPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVp-vVPGTpgP-it 171 (1176)
T KOG0369|consen 96 DEIISIAKKHNVDAV--HPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVP-VVPGTPGP-IT 171 (1176)
T ss_pred HHHHHHHHHcCCCee--cCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCC-ccCCCCCC-cc
Confidence 567899999999987 466 4566788888899999999877754432 122222233433 34455565 45
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
..--++.-....+.|+|+=..-. |-| .. -..+.+.+++.+.++||...|..
T Consensus 172 t~~EA~eF~k~yG~PvI~KAAyG-----GGG--RG-------------mRvVr~~e~vee~f~Ra~SEA~a 222 (1176)
T KOG0369|consen 172 TVEEALEFVKEYGLPVIIKAAYG-----GGG--RG-------------MRVVRSGEDVEEAFQRAYSEALA 222 (1176)
T ss_pred cHHHHHHHHHhcCCcEEEeeccc-----CCC--cc-------------eEEeechhhHHHHHHHHHHHHHH
Confidence 55567777788999999877543 111 11 12345678899999999998874
No 433
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=42.35 E-value=1.5e+02 Score=29.25 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHHHhc-CCCEEEecCCcChHH--HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh-hhHhhHHH
Q 011590 19 LAAKSLSLF-GATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP-GCVHGLAG 94 (482)
Q Consensus 19 ~l~~~L~~~-Gv~~vFgvpG~~~~~--l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp-G~~N~~~a 94 (482)
.+++.|.+. +-=++||.-.+.... +...|..-|...+...+.... . ......+.+- ++++.|.. ...+.+.+
T Consensus 38 ~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~-~--~~~~~~~~~d-~~I~iS~sG~t~~~~~~ 113 (326)
T PRK10892 38 LACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAA-H--GDLGMVTPQD-VVIAISNSGESSEILAL 113 (326)
T ss_pred HHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhh-c--cccccCCCCC-EEEEEeCCCCCHHHHHH
Confidence 356666555 566777776555433 222333456666654322111 1 1112333333 44444444 46777788
Q ss_pred HHHhhhCCCcEEEEeCCCCccc
Q 011590 95 LSNGMINTWPIVMISGSCDQKD 116 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~~ 116 (482)
+..|+..++|++.||+......
T Consensus 114 ~~~ak~~g~~vi~iT~~~~s~l 135 (326)
T PRK10892 114 IPVLKRLHVPLICITGRPESSM 135 (326)
T ss_pred HHHHHHCCCcEEEEECCCCCcc
Confidence 9999999999999999875554
No 434
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=42.29 E-value=34 Score=35.10 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH----HHHHhCC
Q 011590 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK----LVESTGI 247 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~----lae~~g~ 247 (482)
....+.++++++.|.++++++|+.|.+..+......+.+ |+..+|.
T Consensus 235 gv~~~~i~~~a~~l~~a~~~~i~~G~g~~~~~~~~~~~~~i~~L~~~tg~ 284 (414)
T cd02772 235 VEASEEARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGA 284 (414)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEccchhcCcchHHHHHHHHHHHHHHCc
Confidence 345678999999999999999999998876544444444 4444553
No 435
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=41.90 E-value=26 Score=30.73 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=12.8
Q ss_pred ccchHHHHHHHhhhCCCCcEEEEE
Q 011590 434 MGVGLGYCIAAAIACPERLVVAVE 457 (482)
Q Consensus 434 mG~~l~~AiGaala~p~~~vi~~~ 457 (482)
.|.++.+-..+.... ..|+++++
T Consensus 69 ~gn~~~~l~~a~~~~-~~Pvl~i~ 91 (157)
T TIGR03845 69 LGNSINALASLNKTY-GIPLPILA 91 (157)
T ss_pred HHHHHHHHHHHHHcC-CCCEEEEE
Confidence 555444444444232 47888888
No 436
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=41.77 E-value=18 Score=32.42 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=13.4
Q ss_pred HhhhcCCEEEEecCccCc
Q 011590 273 LAIGQCDVALVVGARLNW 290 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~ 290 (482)
..+++||++|+||+++..
T Consensus 159 ~~~~~~Dl~lviGTSl~V 176 (178)
T PF02146_consen 159 EDAEEADLLLVIGTSLQV 176 (178)
T ss_dssp HHHHH-SEEEEESS-STS
T ss_pred HHHHcCCEEEEEccCcEE
Confidence 477899999999998853
No 437
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=41.71 E-value=2e+02 Score=23.60 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHhcCCCEEEecCCcC------hH-HHHHHHHhCCCcEEec------CchHHHHHHHHHHHhHhCCcEEEEEcCChh
Q 011590 21 AKSLSLFGATHMFGVVGIP------VT-SLANRAVQLGVRFIAF------HNEQSAGYAASAYGYLTGKPGILLTVSGPG 87 (482)
Q Consensus 21 ~~~L~~~Gv~~vFgvpG~~------~~-~l~~al~~~~i~~v~~------~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG 87 (482)
++.|++.|+++|.-+-... .. .+-.+.+..|++|+.. ..+.....++..+... .+|..+.|-+|-=
T Consensus 20 ~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~-~~Pvl~hC~sG~R 98 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESL-PKPVLAHCRSGTR 98 (110)
T ss_dssp HHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTT-TTSEEEE-SCSHH
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhC-CCCEEEECCCChh
Confidence 4689999999999985432 12 2334456689999863 2233333345555555 4689999988875
Q ss_pred hHhhHHHHHHh
Q 011590 88 CVHGLAGLSNG 98 (482)
Q Consensus 88 ~~N~~~ai~~A 98 (482)
+ ..+-+|++|
T Consensus 99 a-~~l~~l~~~ 108 (110)
T PF04273_consen 99 A-SALWALAQA 108 (110)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHhh
Confidence 4 344455544
No 438
>PRK10867 signal recognition particle protein; Provisional
Probab=41.65 E-value=79 Score=32.84 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhC-CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 205 NSDIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 205 ~~~~~~~~~~L~~a-~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.....+++..|... .+.+.++.....++.+.+.+..++++.|+|++...
T Consensus 114 TTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 114 TTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC
Confidence 34566777767665 56667777777778889999999999999998653
No 439
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.24 E-value=1.3e+02 Score=27.50 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=48.2
Q ss_pred HHHHHHHHHHh-CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEec
Q 011590 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (482)
Q Consensus 207 ~~~~~~~~L~~-a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (482)
.++++++.+.+ +.+-++++|..- .+.+.+.++|+++|.+.++...-.|.+.... . ......|+||+++
T Consensus 48 ~L~~A~~~i~~i~~~~ILfVgtk~---~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~--~------~~~~~Pdlliv~d 116 (196)
T TIGR01012 48 RLRVAAKFLVRIEPEDILVVSARI---YGQKPVLKFAKVTGARAIAGRFTPGTFTNPM--Q------KAFREPEVVVVTD 116 (196)
T ss_pred HHHHHHHHHHHhhCCeEEEEecCH---HHHHHHHHHHHHhCCceECCeeCCCCCCCcc--c------cccCCCCEEEEEC
Confidence 45555555543 366688888664 5677899999999999987755456553321 1 1246899999997
Q ss_pred CccC
Q 011590 286 ARLN 289 (482)
Q Consensus 286 ~~~~ 289 (482)
..-+
T Consensus 117 p~~~ 120 (196)
T TIGR01012 117 PRAD 120 (196)
T ss_pred Cccc
Confidence 6544
No 440
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=40.82 E-value=57 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G 268 (482)
...+.++++|.+ +.+.++|... +.....+..+++++++|.++.......+...+++++.
T Consensus 50 ~~~~~~c~ll~~--~V~aiiGp~~--s~~~~~~~~~~~~~~iP~i~~~~~~~~l~~~~~~~fr 108 (382)
T cd06380 50 ALTNAICSQLSR--GVFAIFGSYD--KSSVNTLTSYSDALHVPFITPSFPTNDLDDGNQFVLQ 108 (382)
T ss_pred HHHHHHHHHHhc--CcEEEEecCc--HHHHHHHHHHHhcCCCCeEecCCCcccCCCCCcEEEE
Confidence 556777888853 6888889865 5566788999999999999765554444555665543
No 441
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.15 E-value=3e+02 Score=25.41 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh-hhHh--hH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP-GCVH--GL 92 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp-G~~N--~~ 92 (482)
=+|.+++.|+..|++.|-|..- -.+....=....+++..-.++++--|| |-.. .-
T Consensus 79 DGEliA~~l~kfG~~~IRGSs~----------------------Kgg~~Alr~l~k~Lk~G~~i~itpDgPkGp~~~~~~ 136 (214)
T COG2121 79 DGELIARLLEKFGLRVIRGSSN----------------------KGGISALRALLKALKQGKSIAITPDGPKGPVHKIGD 136 (214)
T ss_pred CHHHHHHHHHHcCceEEeccCC----------------------cchHHHHHHHHHHHhCCCcEEEcCCCCCCCceeccc
Confidence 4788888888888888876641 111111112222333323455555555 2222 22
Q ss_pred HHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~ 144 (482)
+.++-|+..+.|++.+.-..... -.+.+.|+..+-.|+.|-.+.+-+|
T Consensus 137 Gii~LA~~sg~pi~pv~~~~sr~----~~lKsWDk~~IP~PFgk~~i~~geP 184 (214)
T COG2121 137 GIIALAQKSGVPIIPVGVATSRC----WRLKTWDKTIIPLPFGKIKIVLGEP 184 (214)
T ss_pred hhhHhhHhcCCCeEEEEEeeeee----eeecccccccccCccceeEEEecCc
Confidence 46777999999999998776442 2345678888888888877766543
No 442
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=40.11 E-value=1.5e+02 Score=30.22 Aligned_cols=192 Identities=18% Similarity=0.252 Sum_probs=95.2
Q ss_pred EEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--CCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHH-
Q 011590 81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF--GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLER- 157 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~- 157 (482)
+.-.+|-.++...+++..+..+ ++.++..+..... -.+.|.++| .++...+...+.+.- -++-++++.|=++
T Consensus 180 IgG~tp~~~e~a~~lY~~iv~~--~~~vts~~tAEm~Kl~EN~fRdVN-IALaNElali~~~~G--IdvwevIeaAnt~P 254 (436)
T COG0677 180 IGGVTPKCAELAAALYKTIVEG--VIPVTSARTAEMVKLTENTFRDVN-IALANELALICNAMG--IDVWEVIEAANTKP 254 (436)
T ss_pred eecCCHHHHHHHHHHHHHheEE--EEEcCChHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHhC--CcHHHHHHHhccCC
Confidence 4455677777777777777777 5555544322211 123345555 345566666666553 2454555444332
Q ss_pred ---hhcCCCceEEEEcCcchhccccChhH---HHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCC-----EEEEc
Q 011590 158 ---AVSGRPGGCYLDLPTDVLHQTISVSE---AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKP-----LIVFG 226 (482)
Q Consensus 158 ---a~~~~~gPv~l~iP~dv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rp-----vil~G 226 (482)
...+.||---=+||.|-++-.+..+. ...+...+ +.-......-.++++.+.|.++.|| +.+.|
T Consensus 255 ~~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tA-----reIN~~mP~~Vv~~~~~al~~~~k~~~~skIlvlG 329 (436)
T COG0677 255 RVNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTA-----REINDSMPRHVVDRVKEALNKAGKPLSGSKILVLG 329 (436)
T ss_pred ceeecCCCCCCCCcccccCchheeecccccCCchHHHHHH-----HHHhccCCHHHHHHHHHHHHHcCCCCcCceEEEEE
Confidence 11222333344788886655543321 11111100 1112234455677888777665443 55566
Q ss_pred -------CCccccccHHHHHHHHHHhCCcEe-eCCCCCCCCC-CCCCcccc-hHHHHhhhcCCEEEEe
Q 011590 227 -------KGAAYARAEGELKKLVESTGIPFL-PTPMGKGLLP-DTHPLAAT-AARSLAIGQCDVALVV 284 (482)
Q Consensus 227 -------~g~~~~~~~~~l~~lae~~g~pv~-~t~~~~g~~~-~~hp~~~G-~~~~~~l~~aDlvl~i 284 (482)
...+.|-+.+ +.++.++.|.-|. ..+.-+ -+| ..+-.-++ ....+.++.+|+|+..
T Consensus 330 layK~dvdD~ReSPa~~-ii~~l~~~g~~v~~~DP~v~-~~~~~~~~~~~~~~~~e~al~~~D~vVi~ 395 (436)
T COG0677 330 LAYKGDVDDLRESPALD-IIELLEEWGGEVLVYDPYVK-ELPTREDGEGVTLAILEEALKDADAVVIA 395 (436)
T ss_pred eeecCCCcccccCchHH-HHHHHHHhCCeEEEECCCCC-cchhhhhccccchhhHHHHhccCCEEEEE
Confidence 2234444444 4455555555444 333332 122 11122233 2345788899998887
No 443
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=40.02 E-value=53 Score=33.61 Aligned_cols=45 Identities=29% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCcccc----ccHHHHHHHHHHhC
Q 011590 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA----RAEGELKKLVESTG 246 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~----~~~~~l~~lae~~g 246 (482)
..+.+.++++++.|.++++++|+.|.|.... .....+..++..++
T Consensus 219 gv~~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 219 GIPAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred CcCHHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 4456789999999999999999999888632 33455677777775
No 444
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=39.96 E-value=22 Score=30.28 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=27.0
Q ss_pred CEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 221 PLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
.|+++|..+..|+...++.+|+++++++.+
T Consensus 11 VVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv 40 (148)
T PF06711_consen 11 VVFIVGFRVLTSDTRRAIRRLSERLNIKPV 40 (148)
T ss_pred HhheeeEEecccchHHHHHHHHHHhCCCce
Confidence 478999999999999999999999999754
No 445
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=39.96 E-value=62 Score=37.92 Aligned_cols=105 Identities=15% Similarity=-0.050 Sum_probs=56.2
Q ss_pred HHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH--HH--HhhhcCCEEEEecCccCccccc--CCC-CCCCCCCcEEEEe
Q 011590 238 LKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA--RS--LAIGQCDVALVVGARLNWLLHF--GEP-PKWSKDVKFVLVD 310 (482)
Q Consensus 238 l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~--~~--~~l~~aDlvl~iG~~~~~~~~~--g~~-~~~~~~~~ii~id 310 (482)
..+|...+|.+.+.....-+..|.-.|+-+|.. .. .-+.++|+||..|+++....+. .+. ..-..++|+|.||
T Consensus 202 ~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~t~~~e~~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVD 281 (1235)
T TIGR01580 202 GSRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAIT 281 (1235)
T ss_pred HHHHHHhcCCccccCCCCcchhhHHhHhheecCCCCCCchhhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEc
Confidence 457889999876543221122233344445531 11 2356899999999997643211 111 0013578999999
Q ss_pred CCchhhcccC-CceeEe--ccHHHHHHHHHHhhhc
Q 011590 311 VCKEEIELRK-PHLGLV--GDAKKVLEMINKEIKD 342 (482)
Q Consensus 311 ~d~~~~~~~~-~~~~i~--~D~~~~l~~L~~~l~~ 342 (482)
++........ ..+++. .|...+|.-+-..+++
T Consensus 282 Pr~t~tA~~AD~WLpIrPGTD~ALaLAm~hvII~E 316 (1235)
T TIGR01580 282 PDYAEIAKLCDLWLAPKQGTDAALALAMGHVILRE 316 (1235)
T ss_pred CCCChhhHhhCEEeCCCCChHHHHHHHHHHHHHHC
Confidence 9876664321 123333 4555554444444443
No 446
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=39.82 E-value=55 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.+++..-.+.+.+++++-..|+++......+..+.+++-+|.+|+-++.
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~ 108 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEF 108 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeec
Confidence 4556667788888888888888887776567788999999999987763
No 447
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=39.78 E-value=1.9e+02 Score=25.37 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcC
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIP 39 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~ 39 (482)
-+...+-..+.|+++||++-.++-+.+
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~SaH 36 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVVSAH 36 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEECcc
Confidence 345778889999999999999988853
No 448
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=39.49 E-value=2.2e+02 Score=27.24 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHH--HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhHHH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGLAG 94 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG-~~N~~~a 94 (482)
+.+++.|.+..-=++||+-++.... +...+.+.|+..+...+ ... ........+.. -++++.|-+| .-+.+..
T Consensus 119 ~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~-~~~--~~~~~~~~~~~-D~vI~iS~sG~t~~~~~~ 194 (284)
T PRK11302 119 NRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDD-IVM--QRMSCMNSSDG-DVVVLISHTGRTKSLVEL 194 (284)
T ss_pred HHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCC-HHH--HHHHHHhCCCC-CEEEEEeCCCCCHHHHHH
Confidence 4467777777655777775543332 12223345776665443 211 11122223333 3444444455 5566678
Q ss_pred HHHhhhCCCcEEEEeC
Q 011590 95 LSNGMINTWPIVMISG 110 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g 110 (482)
+..|...++|+|.||+
T Consensus 195 ~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 195 AQLARENGATVIAITS 210 (284)
T ss_pred HHHHHHcCCeEEEECC
Confidence 8889999999999996
No 449
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=39.40 E-value=67 Score=32.16 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhhhcCCEEE
Q 011590 207 DIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAIGQCDVAL 282 (482)
Q Consensus 207 ~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l~~aDlvl 282 (482)
.++++.+.+.+ .+|++|+.|....... .+.+.+..++.|+.+...... -++.+|-.-.. ....+.+++|+||
T Consensus 10 ~l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~~---~~~~~pt~~~v~~~~~~~~~~~d~II 85 (348)
T cd08175 10 ALERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVLP---AGDLIADEKAVGRVLKELERDTDLII 85 (348)
T ss_pred HHHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeecC---CCcccCCHHHHHHHHHHhhccCCEEE
Confidence 34555555553 4788899887765433 567777778888755321111 11223322211 1222223899999
Q ss_pred EecC
Q 011590 283 VVGA 286 (482)
Q Consensus 283 ~iG~ 286 (482)
.||.
T Consensus 86 aIGG 89 (348)
T cd08175 86 AVGS 89 (348)
T ss_pred EECC
Confidence 9993
No 450
>PLN02727 NAD kinase
Probab=39.36 E-value=2e+02 Score=32.80 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcCh------HHHHHHHHhCCCcEEecC--------chHHHHHHHHHHHhHhCCcE
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPV------TSLANRAVQLGVRFIAFH--------NEQSAGYAASAYGYLTGKPG 78 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~------~~l~~al~~~~i~~v~~~--------~E~~A~~~A~g~ar~tgk~~ 78 (482)
+++..+. +.|++.|+++|.-+-+... ..+-++.+..|++++... .|+...| +.-+.....+|.
T Consensus 268 Qpspe~l--a~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~f-a~~l~~slpkPV 344 (986)
T PLN02727 268 QVTEEGL--KWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKF-ASLVSDSSKKPI 344 (986)
T ss_pred CCCHHHH--HHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHH-HHHHHhhcCCCE
Confidence 3444443 6688999999999966543 123344456789988652 2444433 344534458899
Q ss_pred EEEEcCChhhHhhHHHHHHhhhCCCc
Q 011590 79 ILLTVSGPGCVHGLAGLSNGMINTWP 104 (482)
Q Consensus 79 v~~~t~GpG~~N~~~ai~~A~~~~~P 104 (482)
.+-|-+|-+-+.++.+.+-.+..+.+
T Consensus 345 LvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 345 YLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred EEECCCCCchHHHHHHHHHHHHcccc
Confidence 99999999999999999999999975
No 451
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=39.33 E-value=74 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
-.++..+.|++.+-.++++...+......+.+..+|+..++|++.
T Consensus 34 G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~ 78 (122)
T PRK04175 34 GTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVY 78 (122)
T ss_pred cHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 456788888888889999998884333357899999999999764
No 452
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=39.05 E-value=1.3e+02 Score=29.00 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhCCC-CEEEEcCCc-cccccHH--HHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhc
Q 011590 202 GIVNSDIDKAVSLLKEAKK-PLIVFGKGA-AYARAEG--ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQ 277 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~r-pvil~G~g~-~~~~~~~--~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~ 277 (482)
...++.++.+++..+++.- |++.--.|- ..++..+ -+.++|+++|+++++-- +++-+-. ..++=+....+.+.+
T Consensus 57 tThPevv~Av~~~v~e~g~ep~vgd~pg~~st~~vlk~~Gi~dla~~~~~~iv~F~-~~~~~~~-s~~~~~~~ia~~vl~ 134 (293)
T COG2006 57 TTHPEVVAAVAEVVKEAGGEPVVGDSPGFGSTSGVLKTTGILDLAEALGLEIVNFD-TKRYVLG-SEWFQGLKIAEPVLE 134 (293)
T ss_pred ccCHHHHHHHHHHHHHhCCcceEecCCCCccHHHHHHHhCHHHHHHHcCCceeeec-cCceEec-cccccCcccchhhhc
Confidence 3457889999998888644 444432221 1112222 27899999999999755 3332211 111112234566778
Q ss_pred CCEEEEe
Q 011590 278 CDVALVV 284 (482)
Q Consensus 278 aDlvl~i 284 (482)
+|++|.+
T Consensus 135 aD~vI~L 141 (293)
T COG2006 135 ADVVINL 141 (293)
T ss_pred cceEEec
Confidence 9999887
No 453
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=38.70 E-value=23 Score=35.79 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch-HHHHhhh--cCCEEEE
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA-ARSLAIG--QCDVALV 283 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~-~~~~~l~--~aDlvl~ 283 (482)
.++++.+.+++-+|++|+.|......+..+.+....++.++.+..-.. + ..+|-+-.. ...+.++ ++|+||+
T Consensus 10 ~l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~----~-~~~p~~~~v~~~~~~~~~~~~D~IIa 84 (366)
T PF00465_consen 10 ALEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDG----V-GPNPTLEDVDEAAEQARKFGADCIIA 84 (366)
T ss_dssp GGGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEE----E-SSS-BHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEec----C-CCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 356666777766699999998554445677788777888887743110 0 223333221 1223333 7999999
Q ss_pred ec
Q 011590 284 VG 285 (482)
Q Consensus 284 iG 285 (482)
||
T Consensus 85 iG 86 (366)
T PF00465_consen 85 IG 86 (366)
T ss_dssp EE
T ss_pred cC
Confidence 99
No 454
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=38.22 E-value=1e+02 Score=27.24 Aligned_cols=43 Identities=14% Similarity=-0.110 Sum_probs=18.9
Q ss_pred HHHHHHHhhhCCCCcEEEEEcch-hccCChHHHHHHHHcCccccc
Q 011590 438 LGYCIAAAIACPERLVVAVEGDS-GFGFSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 438 l~~AiGaala~p~~~vi~~~GDG-sf~~~~~eL~T~~r~~l~i~~ 481 (482)
..+|-|.+.+. +|+.++++-=| |+.-....|.++...++|+++
T Consensus 52 ~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~ 95 (172)
T PF02776_consen 52 AFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLV 95 (172)
T ss_dssp HHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEE
Confidence 33444444443 33444433322 444445555555555555543
No 455
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=37.99 E-value=80 Score=31.09 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCC-CCCCCCCCcccc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK-GLLPDTHPLAAT 268 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~-g~~~~~hp~~~G 268 (482)
+....+.++.|...+++..++|... +.....+.+++++.++|+++..... .+..+.+|+++.
T Consensus 56 ~~~a~~~~~~li~~~~v~aviG~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~~~~f~ 118 (345)
T cd06338 56 PARAARAYERLITQDKVDFLLGPYS--SGLTLAAAPVAEKYGVPMVAGSGASDSIFAQGFKYVFG 118 (345)
T ss_pred HHHHHHHHHHHHhhcCccEEecCCc--chhHHHHHHHHHHhCCcEEecCCCCchHhhcCCceEEE
Confidence 3333344444445568889999764 4667778899999999999754432 222345566554
No 456
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=37.92 E-value=1.4e+02 Score=32.10 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH---HHHh-hhcCCE
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA---RSLA-IGQCDV 280 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~---~~~~-l~~aDl 280 (482)
...++++.+.|.+.++.+|+.-..+..-++...+.++.+++|..|... +|.+.+-..|.. .... -.+.|+
T Consensus 41 ~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~------ip~r~~~~yg~~~~~i~~~~~~~~~L 114 (539)
T TIGR00644 41 EKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYY------IPNRITEGYGLSPEALREAIENGVSL 114 (539)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEE------eCCCCcccCCCCHHHHHHHHhcCCCE
Confidence 356777778888877777777666654466778899999999886432 233333322311 1122 235799
Q ss_pred EEEecCccCc
Q 011590 281 ALVVGARLNW 290 (482)
Q Consensus 281 vl~iG~~~~~ 290 (482)
+|++++-...
T Consensus 115 iI~vD~G~~~ 124 (539)
T TIGR00644 115 IITVDNGISA 124 (539)
T ss_pred EEEeCCCccc
Confidence 9999977654
No 457
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=37.68 E-value=81 Score=29.13 Aligned_cols=55 Identities=16% Similarity=0.356 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhCC-CCEEEEcCCccccccHHHHHHHHHH-hCCcEeeCCCCCC
Q 011590 203 IVNSDIDKAVSLLKEAK-KPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKG 257 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~-rpvil~G~g~~~~~~~~~l~~lae~-~g~pv~~t~~~~g 257 (482)
..+.++-++++++.+.+ ||.+++|-=+-.-++.+.=.+|.+. .++|.++...-||
T Consensus 135 NAPTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkG 191 (208)
T PRK08285 135 NAPTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGRRG 191 (208)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecCCC
Confidence 34567888899998864 9999999776544555554555552 5999999888777
No 458
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=37.66 E-value=78 Score=31.06 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
.+++.-++..+.+-+.+-|.|++-.+. ...+.+.++|+++++|++.|...
T Consensus 66 l~~e~~~~~~~~~~~~~~P~iIvt~~~---~~p~~l~~~a~~~~ip~l~t~~~ 115 (304)
T TIGR00679 66 LPEEEQKQIIHNLLTLNPPAIILSKSF---TDPTVLLQVNETYQVPILKTDLF 115 (304)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEeCCc
Confidence 345666777788888899999998876 34588999999999999988764
No 459
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.58 E-value=1.1e+02 Score=29.34 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
...++...+.++.+.+++.+=++|+...... +...+.+.++|+.+|+|++.
T Consensus 187 ~~~ps~~~l~~l~~~ik~~~v~~if~e~~~~-~k~~~~l~~la~~~~~~v~~ 237 (264)
T cd01020 187 ETEPSPADIAAFQNAIKNRQIDALIVNPQQA-SSATTNITGLAKRSGVPVVE 237 (264)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEeCCCCC-cHHHHHHHHHHHHcCCCEEe
Confidence 4456788999999999999999999988863 45667788999999999975
No 460
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.45 E-value=65 Score=29.85 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=48.4
Q ss_pred ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (482)
Q Consensus 164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae 243 (482)
.|.+|+.|.|.+... ++.++. -.-..+++..-.+.+.+...+.-.||++..... +..++|+++.+
T Consensus 39 ~~~fie~P~~~Lp~~-~e~Di~-------------va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~-g~rkqL~~~~~ 103 (224)
T COG1810 39 LPDFIEEPEDLLPKL-PEADIV-------------VAYGLHPDLLLALPEKAAEGGVKALIVPAEPPE-GLRKQLKEFCE 103 (224)
T ss_pred ccchhhCHHHhcCCC-CCCCEE-------------EEeccCccHHHHHHHHHHhCCccEEEEecCCCh-hHHHHHHHHhh
Confidence 456777777777665 322110 011223444445555545555555666655543 77889999999
Q ss_pred HhCCcEeeCCCCCCCCCCCCC
Q 011590 244 STGIPFLPTPMGKGLLPDTHP 264 (482)
Q Consensus 244 ~~g~pv~~t~~~~g~~~~~hp 264 (482)
.+|+-+..--.--.+=|..||
T Consensus 104 ~~g~e~~~p~p~C~Le~~~~p 124 (224)
T COG1810 104 ELGVEFEAPEPFCSLEPNENP 124 (224)
T ss_pred hcceeeecCCccccCCCCCCh
Confidence 999976544333333444444
No 461
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=37.41 E-value=90 Score=24.29 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
-+++..+.|++.+--++++...+. ......+..+||..++|+..-.
T Consensus 17 G~kqt~Kai~kg~~~~v~iA~Da~-~~vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 17 GLKETLKALKKDQVTSLIIAEDVE-VYLMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred eHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEC
Confidence 467788889877767777777775 3466789999999999988543
No 462
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.34 E-value=37 Score=26.76 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.0
Q ss_pred hcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 276 GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 276 ~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
.+||++|++|.+++-.. .+ -+.|++.+|..
T Consensus 39 ~dAeLviV~G~sipnd~------~l-~GKkv~i~d~~ 68 (103)
T COG3925 39 NDAELVIVFGSSIPNDS------AL-NGKKVWIGDIE 68 (103)
T ss_pred CcccEEEEeccccCCCc------cc-cCceEEEecHH
Confidence 47999999999886311 12 24577767663
No 463
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=37.17 E-value=70 Score=31.04 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
.+.+.+++++++|.+|+| +.++|.|.... ....+.....++|.++.. ++..|-+ ......+.+-|++|
T Consensus 125 l~~~~l~~~~~~i~~A~~-I~i~G~G~S~~-~A~~l~~~l~~~g~~~~~-------~~d~~~~---~~~~~~~~~~Dl~I 192 (292)
T PRK11337 125 LDVDEFHRAARFFYQARQ-RDLYGAGGSAA-IARDVQHKFLRIGVRCQA-------YDDAHIM---LMSAALLQEGDVVL 192 (292)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEecHHHH-HHHHHHHHHhhCCCeEEE-------cCCHHHH---HHHHhcCCCCCEEE
Confidence 456889999999999988 66788885322 233333323346776642 2111111 11223467789998
Q ss_pred EecCccCcccccCCCCCC-CCCCcEEEEeCCch
Q 011590 283 VVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKE 314 (482)
Q Consensus 283 ~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~ 314 (482)
++-.+-.......-.... ..++++|.|.-++.
T Consensus 193 ~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~ 225 (292)
T PRK11337 193 VVSHSGRTSDVIEAVELAKKNGAKIICITNSYH 225 (292)
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 884322111000000000 35688888876554
No 464
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=37.14 E-value=1.1e+02 Score=34.39 Aligned_cols=112 Identities=12% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCcccc---ccH--HHHHHHHHHhCCcEee-CCCCCCCCCCCCCcccchH--
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYA---RAE--GELKKLVESTGIPFLP-TPMGKGLLPDTHPLAATAA-- 270 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~---~~~--~~l~~lae~~g~pv~~-t~~~~g~~~~~hp~~~G~~-- 270 (482)
+++++.+++.|++. +...++.|.+.... ... ..+.+|+..+|-..-. .....+....-++..+|..
T Consensus 126 deAl~~ia~kl~~i~~~~G~~sv~~~~g~g~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~G~~~~ 205 (797)
T TIGR02166 126 DEATDTIADNLKRIIEKYGNEAIYVNYGTGTTGGTMSRSWPPTAVARLLNLCGGYLNQYGSYSTAQINEAMPYTYGISAD 205 (797)
T ss_pred HHHHHHHHHHHHHHHHHhCccceEeecccccccccccccchhHHHHHHHHHhCCccccCCCeecchhhcccceeEeecCC
Confidence 45677777777652 33334455543211 111 2567888888743221 1101111111223334421
Q ss_pred --HHHhhhcCCEEEEecCccCcccccC--CCCCC-----CCCCcEEEEeCCchhh
Q 011590 271 --RSLAIGQCDVALVVGARLNWLLHFG--EPPKW-----SKDVKFVLVDVCKEEI 316 (482)
Q Consensus 271 --~~~~l~~aDlvl~iG~~~~~~~~~g--~~~~~-----~~~~~ii~id~d~~~~ 316 (482)
...-+++||+||.+|+++.+..... ....+ ..++|+|.||+.....
T Consensus 206 ~~~~~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~t 260 (797)
T TIGR02166 206 GSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDT 260 (797)
T ss_pred CCCHHHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCcc
Confidence 1234678999999999976432210 00011 2468999999976543
No 465
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=36.91 E-value=79 Score=31.11 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCC
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK 256 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~ 256 (482)
.+++.-.+..+.+-+.+-|.|++-.+. ...+.+.+.|++.++|++.|...-
T Consensus 66 l~~~~r~~~~~~l~~~~~P~iIvt~~~---~~p~~l~~~a~~~~ipll~t~~~t 116 (308)
T PRK05428 66 LSEEERKERLKKLFSLEPPCIIVTRGL---EPPPELLEAAKEAGIPLLRTPLST 116 (308)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEECcC---CCCHHHHHHHHHcCCcEEEeCCcH
Confidence 456677788888888999999998886 455679999999999999988753
No 466
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=36.85 E-value=3e+02 Score=26.33 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHHHHHH----HHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh-hH
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTSLANR----AVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH-GL 92 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~l~~a----l~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N-~~ 92 (482)
+.+++.|.+..-=++||.-++ ..+... |..-|..++... +...-.. ....-++--++++.|..|-+. .+
T Consensus 119 ~~~~~~i~~a~~I~i~G~G~s--~~~A~~~~~~l~~~g~~~~~~~-d~~~~~~---~~~~~~~~Dv~I~iS~sg~~~~~~ 192 (278)
T PRK11557 119 HECVTMLRSARRIILTGIGAS--GLVAQNFAWKLMKIGINAVAER-DMHALLA---TVQALSPDDLLLAISYSGERRELN 192 (278)
T ss_pred HHHHHHHhcCCeEEEEecChh--HHHHHHHHHHHhhCCCeEEEcC-ChHHHHH---HHHhCCCCCEEEEEcCCCCCHHHH
Confidence 345677777776677777544 333333 334566665432 2211111 122224455667777777544 56
Q ss_pred HHHHHhhhCCCcEEEEeCCCCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
..+..|...++|+|.||+....
T Consensus 193 ~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 193 LAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred HHHHHHHHcCCCEEEEcCCCCC
Confidence 6788899999999999997643
No 467
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=36.68 E-value=1.2e+02 Score=27.71 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHhCC-CCEEEEc-CCcccccc---HH--HHHHHHHHhCCcEeeCCCCCCCCCCC--CCcccchHHH
Q 011590 202 GIVNSDIDKAVSLLKEAK-KPLIVFG-KGAAYARA---EG--ELKKLVESTGIPFLPTPMGKGLLPDT--HPLAATAARS 272 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~-rpvil~G-~g~~~~~~---~~--~l~~lae~~g~pv~~t~~~~g~~~~~--hp~~~G~~~~ 272 (482)
..+++.++++++.|+++. +++++.. .+...... .+ -+.+++++.|++++..-.....--.. ....-+....
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~v~ 98 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAEEYGAELVDLDDEPWVEVPLPGGEHLKEFKVP 98 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHHhcCCcEEEccCCcccceeccCCeeeeeEEhh
Confidence 456789999999998642 2334333 33210111 12 25677778888877554433211111 1112222345
Q ss_pred HhhhcCCEEEEe
Q 011590 273 LAIGQCDVALVV 284 (482)
Q Consensus 273 ~~l~~aDlvl~i 284 (482)
..+.++|++|.+
T Consensus 99 ~~~~eaD~iInv 110 (206)
T PF04015_consen 99 RILLEADVIINV 110 (206)
T ss_pred HHHHhCCEEEEe
Confidence 667779999998
No 468
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.43 E-value=74 Score=28.30 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEE
Q 011590 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVA 281 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlv 281 (482)
..+++.+++++++|.+++| ++++|.|... ...+.+...-.++|.++..-.. . . ...+.+-|++
T Consensus 17 ~l~~~~l~~~~~~i~~a~~-I~i~G~G~S~-~~A~~~~~~l~~~g~~~~~~~~-------~--~------~~~~~~~D~v 79 (179)
T cd05005 17 KIDEEELDKLISAILNAKR-IFVYGAGRSG-LVAKAFAMRLMHLGLNVYVVGE-------T--T------TPAIGPGDLL 79 (179)
T ss_pred hcCHHHHHHHHHHHHhCCe-EEEEecChhH-HHHHHHHHHHHhCCCeEEEeCC-------C--C------CCCCCCCCEE
Confidence 3467889999999999965 8888888642 2233333333456777765311 0 0 1235667888
Q ss_pred EEecCc
Q 011590 282 LVVGAR 287 (482)
Q Consensus 282 l~iG~~ 287 (482)
|++..+
T Consensus 80 I~iS~s 85 (179)
T cd05005 80 IAISGS 85 (179)
T ss_pred EEEcCC
Confidence 888543
No 469
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.23 E-value=1e+02 Score=30.32 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
..++++.|...+++.+++|... +.....+.+++++.++|+++...+
T Consensus 55 a~~~~~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~vp~i~~~~~ 100 (344)
T cd06345 55 AVRAFERLVSQDKVDAVVGGYS--SEVVLALQDVAAENKVPFIVTGAA 100 (344)
T ss_pred HHHHHHHHhccCCceEEECCcc--hHHHHHHHHHHHHcCCcEEeccCC
Confidence 3344444445578999999764 456678899999999999975443
No 470
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=36.21 E-value=1.9e+02 Score=28.37 Aligned_cols=101 Identities=9% Similarity=-0.028 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh---CC-----CcEEecCc-----------hHHHH-HHHHHHHhHh
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ---LG-----VRFIAFHN-----------EQSAG-YAASAYGYLT 74 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~---~~-----i~~v~~~~-----------E~~A~-~~A~g~ar~t 74 (482)
...+.+++.|++-|-=++||.-++......++.+- -+ +..+..-. |.... +..+=.+..-
T Consensus 46 ~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l 125 (296)
T PRK12570 46 QAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGL 125 (296)
T ss_pred HHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCC
Confidence 46778899999999888999988887777776432 11 11111111 11111 1111111111
Q ss_pred CCcEEEEEcCChhh-HhhHHHHHHhhhCCCcEEEEeCCCCcc
Q 011590 75 GKPGILLTVSGPGC-VHGLAGLSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 75 gk~~v~~~t~GpG~-~N~~~ai~~A~~~~~Pvl~i~g~~~~~ 115 (482)
++--++++.|..|- -+.+.++..|...+.+++.||+.....
T Consensus 126 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 126 TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 23345555555554 466778888999999999999987543
No 471
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=35.90 E-value=93 Score=23.96 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.++..+.|++.+--++++...+.. ...+.+..+|+..++|++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 456777888777778888888753 567789999999999998644
No 472
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=35.28 E-value=54 Score=25.36 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.-|.+++=+.. ...+.++++|++.|+|++.+.
T Consensus 16 ~aP~VvAKG~g---~~A~~I~~~A~e~~VPi~~~~ 47 (82)
T TIGR00789 16 KAPKVVASGVG---EVAERIIEIAKKHGIPIVEDP 47 (82)
T ss_pred CCCEEEEEeCC---HHHHHHHHHHHHcCCCEEeCH
Confidence 34667764332 467889999999999999764
No 473
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=35.23 E-value=61 Score=33.93 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
.+.++++++.|.++++++|+.|.+.........+..|+..+|..
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 47789999999999999999999874345566777788877654
No 474
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.20 E-value=71 Score=26.18 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHhcCCCEEEecCC--cChHHHHHHHHhCCCcEEecCch
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVG--IPVTSLANRAVQLGVRFIAFHNE 60 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG--~~~~~l~~al~~~~i~~v~~~~E 60 (482)
--.+.|++..++.|++.+|+=-| +-+..|.+.+.+.|++|+...-|
T Consensus 61 l~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~ 108 (110)
T PF00289_consen 61 LNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPE 108 (110)
T ss_dssp TSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HH
T ss_pred ccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChH
Confidence 45688899999999999997666 34667888888899999977544
No 475
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=35.17 E-value=96 Score=25.73 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
-.+++.+.|++.+-.++++...+......+.+..+|+..++|++.
T Consensus 30 G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~ 74 (117)
T TIGR03677 30 GTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVY 74 (117)
T ss_pred cHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 356778888888888899888874323458899999999999764
No 476
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.17 E-value=1.2e+02 Score=29.60 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 210 ~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
+.++.|.+.+++..++|... +.....+..++++.++|+++....
T Consensus 57 ~~~~~li~~~~v~aiiG~~~--s~~~~~v~~~~~~~~ip~i~~~~~ 100 (334)
T cd06347 57 NAATRLIDQDKVVAIIGPVT--SGATLAAGPIAEDAKVPMITPSAT 100 (334)
T ss_pred HHHHHHhcccCeEEEEcCCc--cHhHHHhHHHHHHCCCeEEcCCCC
Confidence 33444444468888888754 456777889999999999985543
No 477
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=35.15 E-value=1e+02 Score=30.68 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEec
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAF 57 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~ 57 (482)
..-+.+++.|++++|++++.+-|...+.-...|.+.++.+|.+
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigi 123 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGV 123 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEee
Confidence 4678899999999999999999998887777776656666643
No 478
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=35.13 E-value=48 Score=26.99 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP 298 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~ 298 (482)
+|.++++|.|...+-..+.+.+.++..|+++-....+-... .....++|+|| +|-.+.+.. ....
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~------------~~~~~~~DviL-l~Pqi~~~~--~~i~ 68 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA------------GEKGQNADVVL-LGPQIAYML--PEIQ 68 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchh------------hccccCCCEEE-ECHHHHHHH--HHHH
Confidence 57899999999877777788888899999875433221111 12344678554 443332211 0010
Q ss_pred CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
...++.+++.|+... .=..|.+.+|.+..+.+++
T Consensus 69 ~~~~~~pV~~I~~~~----------Yg~~dg~~vl~~a~~~~~~ 102 (106)
T PRK10499 69 RLLPNKPVEVIDSLL----------YGKVDGLGVLKAAVAAIKK 102 (106)
T ss_pred hhcCCCCEEEEChHh----------hhcCCHHHHHHHHHHHHHH
Confidence 112235677666532 2235777788777666543
No 479
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=35.02 E-value=1.1e+02 Score=31.61 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHH-hCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhh--hcCCEEEE
Q 011590 208 IDKAVSLLK-EAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAI--GQCDVALV 283 (482)
Q Consensus 208 ~~~~~~~L~-~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l--~~aDlvl~ 283 (482)
..+++..+. +..+.+.++.....++.+.+.+..++++.|+|++. ...+.+|.-+-..+...+ +..|+||+
T Consensus 116 aakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~------~~~~~~P~~i~~~al~~~~~~~~DvVII 188 (428)
T TIGR00959 116 CGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA------LGKGQSPVEIARRALEYAKENGFDVVIV 188 (428)
T ss_pred HHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe------cCCCCCHHHHHHHHHHHHHhcCCCEEEE
No 480
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=34.63 E-value=55 Score=36.22 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCEEEEcCCcccccc----HHHHHHHHHHhCC
Q 011590 209 DKAVSLLKEAKKPLIVFGKGAAYARA----EGELKKLVESTGI 247 (482)
Q Consensus 209 ~~~~~~L~~a~rpvil~G~g~~~~~~----~~~l~~lae~~g~ 247 (482)
.++++.|++||+|+|++|.|+..... ...+..|+..+|.
T Consensus 428 ~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~ 470 (687)
T PRK09130 428 HEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGA 470 (687)
T ss_pred HHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCC
Confidence 56889999999999999999866432 2345667777763
No 481
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=34.33 E-value=80 Score=24.75 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
++++.+.|.+.+.-++++-..+......+.+..+|++.++|++...
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~ 65 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP 65 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC
Confidence 5677888888888888888887643434459999999999998544
No 482
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=34.21 E-value=1e+02 Score=30.47 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCC--CCCCCcccc
Q 011590 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL--PDTHPLAAT 268 (482)
Q Consensus 210 ~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~--~~~hp~~~G 268 (482)
+.++.|...+++..++|... +.....+..++++.++|+++.......+ ...+|+++.
T Consensus 56 ~~a~~l~~~~~v~~viG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r 114 (350)
T cd06366 56 SAALDLLENKPVVAIIGPQC--SSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFR 114 (350)
T ss_pred HHHHHHhccCCceEEECCCc--HHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEE
Confidence 34444444478999999765 5677788899999999998765443333 223465544
No 483
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.11 E-value=31 Score=28.05 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=28.1
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
+|.++++|.|...+-..+.+.++++..|+++-.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i 34 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEV 34 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEE
Confidence 578899999997777788899999999998643
No 484
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=33.97 E-value=5.8e+02 Score=26.79 Aligned_cols=169 Identities=13% Similarity=0.164 Sum_probs=87.1
Q ss_pred HHHhCCCcEEecCchHHHHHHHHHHHhHhC-CcEEEEEcCC-h--hhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCC
Q 011590 46 RAVQLGVRFIAFHNEQSAGYAASAYGYLTG-KPGILLTVSG-P--GCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 46 al~~~~i~~v~~~~E~~A~~~A~g~ar~tg-k~~v~~~t~G-p--G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~ 121 (482)
.|...|.+++.+.+=..| ...+.. .+.+|+.=.- | .....+.-+..-. ..+|||++||..+-..
T Consensus 23 ~L~~~G~~v~~a~~~~~a------l~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~~----- 90 (464)
T COG2204 23 ALELAGYEVVTAESAEEA------LEALSESPFDLVLLDIRMPGMDGLELLKEIKSRD-PDLPVIVMTGHGDIDT----- 90 (464)
T ss_pred HHHHcCCeEEEeCCHHHH------HHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhC-CCCCEEEEeCCCCHHH-----
Confidence 345567777766553332 223222 3566665432 2 2233344444433 7899999998653221
Q ss_pred CCCcCHhhhhc-cccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccC
Q 011590 122 FQELDQVEAVK-PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQ 200 (482)
Q Consensus 122 ~q~~d~~~~~~-~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (482)
.+..++ ...-|-..+-+++++...+++|+......+...- +......... ...-
T Consensus 91 -----AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~------~~~~~~~~~~--------------~liG 145 (464)
T COG2204 91 -----AVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRR------SLKRAKSLGG--------------ELVG 145 (464)
T ss_pred -----HHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhh------hhhccccccC--------------Ccee
Confidence 111111 1223333445788888899999886543211100 1100000000 0111
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCcccc-ccHHHHHHHHHHhCCcEee
Q 011590 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 201 ~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~-~~~~~l~~lae~~g~pv~~ 251 (482)
.++....+.+..+.+..+.-||+|.|.-...- -.+..|.+...+-+-|.+.
T Consensus 146 ~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVa 197 (464)
T COG2204 146 ESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIA 197 (464)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCcee
Confidence 12334567778888888999999999654211 2233456666666667664
No 485
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=33.65 E-value=1.9e+02 Score=25.40 Aligned_cols=39 Identities=18% Similarity=-0.003 Sum_probs=22.1
Q ss_pred CCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461 (482)
Q Consensus 420 ~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGs 461 (482)
.+|.-.+...+-| +..++++...|... .-|+++|+||..
T Consensus 62 g~~~v~~~t~GpG-~~n~~~~l~~A~~~--~~Pvl~I~g~~~ 100 (164)
T cd07039 62 GKLGVCLGSSGPG-AIHLLNGLYDAKRD--RAPVLAIAGQVP 100 (164)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHHhc--CCCEEEEecCCc
Confidence 3565555544433 33355444444443 479999998755
No 486
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=33.59 E-value=90 Score=30.22 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCC--CCCCcccc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP--DTHPLAAT 268 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~--~~hp~~~G 268 (482)
..++.+++++. .+...+++|... +.....+..+++.+++|++....+...+. +.+|+++.
T Consensus 50 ~~~~~~c~l~~-~~~v~ai~G~~~--s~~~~~v~~~~~~~~iP~is~~~~~~~~~~~~~~~~~~~ 111 (328)
T cd06351 50 SLLRAVCDLLV-SQGVAAIFGPTS--SESASAVQSICDALEIPHISISGGSEGLSDKEESSTTLQ 111 (328)
T ss_pred HHHHHHHHHHh-ccCcEEEECCCC--HHHHHHHHHHhccCCCCeEEeecCcccccccccccceEE
Confidence 45667777776 567888999875 45666789999999999997654443332 34565554
No 487
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=33.49 E-value=84 Score=31.35 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHh---CCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590 206 SDIDKAVSLLKE---AKKPLIVFGKGAAYARAEGELKKLVESTG 246 (482)
Q Consensus 206 ~~~~~~~~~L~~---a~rpvil~G~g~~~~~~~~~l~~lae~~g 246 (482)
..++++.+.+++ ++|++|+.|..... ...+.+.+..+..+
T Consensus 10 g~l~~l~~~l~~~~~~~~~liv~d~~~~~-~~~~~v~~~l~~~~ 52 (339)
T cd08173 10 GVLEKIPNVLRDLLLGGRVLVVTGPTTKS-IAGKKVEALLEDEG 52 (339)
T ss_pred CHHHHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHHHHHHhcC
Confidence 345566666652 48899999887754 45566666666665
No 488
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=33.39 E-value=79 Score=31.22 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
..+++++++|.++++.++++|.|... .....+.....++|.++..
T Consensus 34 ~~l~~~~~~l~~a~~~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~ 78 (326)
T PRK10892 34 QDFTLACEKMFWCKGKVVVMGMGKSG-HIGRKMAATFASTGTPSFF 78 (326)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHhH-HHHHHHHHHHhcCCceeEE
Confidence 36999999999987779999999643 3334444444457777654
No 489
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=32.89 E-value=1.5e+02 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=25.8
Q ss_pred CCCcccchHHHHHHHhhhC-------CCCcEEEEEcchhccCCh
Q 011590 430 TWGTMGVGLGYCIAAAIAC-------PERLVVAVEGDSGFGFSA 466 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~-------p~~~vi~~~GDGsf~~~~ 466 (482)
-+..||.+|+..+|.++.+ .+.|+|++.--||.-|-=
T Consensus 130 df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQE 173 (294)
T COG0777 130 DFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQE 173 (294)
T ss_pred eccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhH
Confidence 3556666666666655542 357999999999987743
No 490
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=32.89 E-value=1.4e+02 Score=29.05 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC----CCCCCCCCCcccchHHHHhhh---cCCEEE
Q 011590 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG----KGLLPDTHPLAATAARSLAIG---QCDVAL 282 (482)
Q Consensus 210 ~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~----~g~~~~~hp~~~G~~~~~~l~---~aDlvl 282 (482)
++.+.|.+....||-+|+| |+||+.+..+ ..+++-| ....+|. +||++|
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG-----------------GIPVv~~~~~~~GVeAVIDKD-------lasalLA~~i~AD~li 230 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG-----------------GIPVVEEGAGLQGVEAVIDKD-------LASALLAEQIDADLLI 230 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC-----------------CcceEecCCCcceeeEEEccH-------HHHHHHHHHhcCCEEE
Confidence 4456777778888888877 5788866543 1122221 1223332 699888
Q ss_pred EecCccCcccccC
Q 011590 283 VVGARLNWLLHFG 295 (482)
Q Consensus 283 ~iG~~~~~~~~~g 295 (482)
.+=.--..+.+||
T Consensus 231 ILTdVd~Vy~n~g 243 (312)
T COG0549 231 ILTDVDAVYVNFG 243 (312)
T ss_pred EEeccchheecCC
Confidence 8832222333444
No 491
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=32.84 E-value=1.1e+02 Score=24.44 Aligned_cols=43 Identities=14% Similarity=0.342 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.++..+.|++.+-.++++...+. ....+.+..+|+..++|++.
T Consensus 21 ~~~v~kai~~gkaklViiA~D~~-~~~~~~i~~~c~~~~Ip~~~ 63 (99)
T PRK01018 21 SKRTIKAIKLGKAKLVIVASNCP-KDIKEDIEYYAKLSGIPVYE 63 (99)
T ss_pred HHHHHHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 45567777777777888887763 46678899999999999865
No 492
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=32.81 E-value=5.6e+02 Score=26.30 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=38.9
Q ss_pred HHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeec----CCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 95 LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA----KDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 95 i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~----~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+..|-..++|-|+..|.-+-- ..+...++...--=|.+-.+.-.+ +++++..++ -+-+..-+...+|||.+.|
T Consensus 263 l~AA~~~GIP~Vvs~GalDmV--nFg~~~tvPe~~~~R~~~~HNp~vTlmRtt~eE~~~~-g~~ia~kLn~~~gpv~v~l 339 (403)
T PF06792_consen 263 LEAAARAGIPQVVSPGALDMV--NFGPPDTVPEKFKGRKLYEHNPQVTLMRTTPEENRQL-GEFIAEKLNRAKGPVRVLL 339 (403)
T ss_pred HHHHHHcCCCEEEecCcccee--ccCCcccCCHhhcCCcceecCCceeEeeCCHHHHHHH-HHHHHHHHhcCCCCEEEEE
Confidence 455667799999999875422 222222221110112222222222 234444333 3344433444569999999
Q ss_pred Ccc
Q 011590 171 PTD 173 (482)
Q Consensus 171 P~d 173 (482)
|..
T Consensus 340 P~~ 342 (403)
T PF06792_consen 340 PLG 342 (403)
T ss_pred CCC
Confidence 975
No 493
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=32.65 E-value=3.8e+02 Score=24.26 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEE-EcCChhhHhhHH
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL-TVSGPGCVHGLA 93 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~-~t~GpG~~N~~~ 93 (482)
..++.+++.+++.||+.++.+-|-.... .+...++..+-+.... -.+... .++-+ .-.| +.+....
T Consensus 34 e~a~~vld~a~~~gv~~iitLgG~~~~~-----~~trp~V~~~at~~el------~~~l~~-~g~~~~~~~g-~i~G~~g 100 (188)
T TIGR00162 34 ELVNAIIDVAKKYGARMIYTLGGYGVGK-----LVEEPYVYGAATSPEL------VEELKE-HGVKFREPGG-GIIGASG 100 (188)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCCC-----CCCCCceEEEeCCHHH------HHHHHh-cCCeeecCCC-ccccHHH
Confidence 5899999999999999999998854321 1112333333332222 111111 11111 1111 2333333
Q ss_pred HH-HHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHh
Q 011590 94 GL-SNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA 158 (482)
Q Consensus 94 ai-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a 158 (482)
.| ..|...++|.+.|.+.++....... -....+..+..+..........++-.+.+++.++.+
T Consensus 101 lLl~~a~~~gi~ai~L~~e~p~y~pDP~--AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~~~~~~ 164 (188)
T TIGR00162 101 LLLGVSELEGIPGACLMGETPGYMIDPK--AAKAVLEVLCKMLSLEVSVEALEERAKEMEKIIAKI 164 (188)
T ss_pred HHHHHHHHCCCCeEEEEEeCCCCCCChH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33 3478899999999999866543211 111223344444444444444333333444444433
No 494
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=32.56 E-value=2.4e+02 Score=25.94 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHHHHHh-CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEec
Q 011590 207 DIDKAVSLLKE-AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (482)
Q Consensus 207 ~~~~~~~~L~~-a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (482)
.++.|++.|.. ..+-++++|..- .+.+.+.++|+++|.+.++...-.|.+.... .......|+||+++
T Consensus 54 ~L~~A~~~i~~~~~~~ILfVgTk~---~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~--------~~~~~~Pdliiv~d 122 (204)
T PRK04020 54 RIRIAAKFLSRYEPEKILVVSSRQ---YGQKPVQKFAEVVGAKAITGRFIPGTLTNPS--------LKGYIEPDVVVVTD 122 (204)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecCccCCCcCcCcc--------hhccCCCCEEEEEC
Confidence 45556555554 355577777653 5678899999999999887644445553321 01123789999998
Q ss_pred CccC
Q 011590 286 ARLN 289 (482)
Q Consensus 286 ~~~~ 289 (482)
..-+
T Consensus 123 p~~~ 126 (204)
T PRK04020 123 PRGD 126 (204)
T ss_pred Cccc
Confidence 6554
No 495
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.50 E-value=36 Score=36.64 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC-----CEEEEcCCccccccHHHHHHHHHH-hCCcEeeCCCCCCCCCCCC--CcccchHH----H
Q 011590 205 NSDIDKAVSLLKEAKK-----PLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKGLLPDTH--PLAATAAR----S 272 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~r-----pvil~G~g~~~~~~~~~l~~lae~-~g~pv~~t~~~~g~~~~~h--p~~~G~~~----~ 272 (482)
+++++.+++.|++.+. =+.+.+++.........+.+|+.. +|.+.+.+...-...+... ...+|... .
T Consensus 73 deAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~~e~~~~~~~l~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 152 (565)
T cd02754 73 DEALDLIAERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGADGPPGSY 152 (565)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEecCCccHHHHHHHHHHHHHhCCCCcccCCCcccchHHHHHHHhhccCCCCCCCH
Q ss_pred HhhhcCCEEEEecCccCcccccCCCCCC---CC--CCcEEEEeC
Q 011590 273 LAIGQCDVALVVGARLNWLLHFGEPPKW---SK--DVKFVLVDV 311 (482)
Q Consensus 273 ~~l~~aDlvl~iG~~~~~~~~~g~~~~~---~~--~~~ii~id~ 311 (482)
.-+++||+||++|+++.+.......... .. ++|+|.||+
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP 196 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDP 196 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcC
No 496
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=32.47 E-value=3.1e+02 Score=23.28 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecC--chHHHHHHHHHHHhHhCCcEEEEEcCC-hh-h
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFH--NEQSAGYAASAYGYLTGKPGILLTVSG-PG-C 88 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~--~E~~A~~~A~g~ar~tgk~~v~~~t~G-pG-~ 88 (482)
..+.-+.+++.|.+.|++.|+-+.+. .++...+...+++++... +...+..+..|.....+.-.++++.+- |- -
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~ 100 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLS 100 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccC
Confidence 34677889999999999999888777 345555555677777665 334444444455544233334444332 22 2
Q ss_pred HhhHHHHHHhhh-CCCcEEEEeC
Q 011590 89 VHGLAGLSNGMI-NTWPIVMISG 110 (482)
Q Consensus 89 ~N~~~ai~~A~~-~~~Pvl~i~g 110 (482)
.+.+..+..++. +..++++.+.
T Consensus 101 ~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 101 PELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHhccCCcEEEEEE
Confidence 345556666554 3445554443
No 497
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=32.43 E-value=92 Score=29.89 Aligned_cols=51 Identities=22% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCHHHHHHH-HHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 203 IVNSDIDKA-VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 203 ~~~~~~~~~-~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.++....++ ++.++....=+|++|.+...+.....=-.+|+.||+|.+|..
T Consensus 94 ~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 94 ADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeE
Confidence 334433333 344555555599999998766777777999999999999754
No 498
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=32.43 E-value=4.9e+02 Score=25.47 Aligned_cols=114 Identities=14% Similarity=0.203 Sum_probs=70.5
Q ss_pred CcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh--hHhhHHHHHHhhhCCCcEEEEeCCCCc---------cc----
Q 011590 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG--CVHGLAGLSNGMINTWPIVMISGSCDQ---------KD---- 116 (482)
Q Consensus 52 i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG--~~N~~~ai~~A~~~~~Pvl~i~g~~~~---------~~---- 116 (482)
..++++.||+++++ |.|..++.-+..|++. +|=| ..=..+++..|..-+.=|.+|.-+.-- ..
T Consensus 65 ~~~~hs~~gra~a~-atGik~A~~~l~Viv~-gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 65 PPWVHSLHGRAAAV-ATGIKLANPALSVIVI-GGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred CCceeeccCcchhh-HHHHHHhccCCeEEEE-ecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 56788899999987 5788887766554443 3444 444557888888888888888654321 11
Q ss_pred -------CCCCCCCCcCHhhhhcc-ccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 117 -------FGRGDFQELDQVEAVKP-FSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 117 -------~~~~~~q~~d~~~~~~~-~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
.|+....-+|...++-. -.-|+.+....+ +..+.+.++.|...+ ||.+|.+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~--~~~l~~~i~kA~~~~-Gps~I~v 201 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGD--PKDLTEKIKKAAEHK-GPSFIDV 201 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccC--HHHHHHHHHHHHhcc-CCeEEEE
Confidence 11111122354444333 356777775433 555567777777766 9999875
No 499
>PF12813 XPG_I_2: XPG domain containing
Probab=32.30 E-value=80 Score=30.03 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=29.9
Q ss_pred HHHHHHHHHhC---CCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 208 IDKAVSLLKEA---KKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 208 ~~~~~~~L~~a---~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
++.+.+.|++. +.+++++-+. |...+..+|.++|+||++
T Consensus 6 ~~~~~e~L~~~~~~~~~~~~~~~E-----AD~~~A~~A~~~~~~VLt 47 (246)
T PF12813_consen 6 VPAFIEALRESWRYGVPVVQCPGE-----ADRECAALARKWGCPVLT 47 (246)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCcc-----chHHHHHHHHHcCCeEEc
Confidence 34456666666 8888888644 567899999999999986
No 500
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=32.29 E-value=2.4e+02 Score=30.36 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=110.1
Q ss_pred HHHHHHHHhcC--CCEEEecCCc-ChHHHHHHHHh-CCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 18 TLAAKSLSLFG--ATHMFGVVGI-PVTSLANRAVQ-LGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 18 ~~l~~~L~~~G--v~~vFgvpG~-~~~~l~~al~~-~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
....+.|++.+ ...+.|..|+ .+..+.|-+.+ ..-++|-| --|++++..|.|.+-- |+ -.-+|. =.+|.+
T Consensus 324 k~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia~G~a~~-g~-~~Pf~~---tf~~F~ 398 (632)
T KOG0523|consen 324 KAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIANGIACR-GR-TIPFCG---TFAAFF 398 (632)
T ss_pred HHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhhhchhcC-CC-ccchhH---HHHHHH
Confidence 34455555554 3466666664 44455554442 23456533 5699999888887643 22 222222 144444
Q ss_pred H----HHHHhhhCCCcEEEEeCCCCcccCC-CC-CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceE
Q 011590 93 A----GLSNGMINTWPIVMISGSCDQKDFG-RG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC 166 (482)
Q Consensus 93 ~----ai~~A~~~~~Pvl~i~g~~~~~~~~-~~-~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv 166 (482)
+ .+--+-.+..+++.+.....- ..| +| .+|-+..+.+|+.+-+....- |.+-.+ +.+|+..|...+..|.
T Consensus 399 trA~dqvr~~a~s~~~v~~v~th~~i-~~GeDGPth~~iedlA~frsiPn~~v~~--PaD~~e-t~~av~~Aa~~~~~p~ 474 (632)
T KOG0523|consen 399 TRAFDQVRMGALSQANVIYVATHDSI-GLGEDGPTHQPIEDLAMFRSIPNMIVFR--PADGNE-TENAVATAANTKGTPS 474 (632)
T ss_pred HHhhhheeehhhccCCcEEEEEeccc-cccCCCcccccHHHHHHHHhCCCceEEe--cCchHH-HHHHHHHHHhcCCCee
Confidence 3 444455566666666654422 223 22 366677789999987654433 233222 3678888877554477
Q ss_pred EEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHH-h
Q 011590 167 YLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES-T 245 (482)
Q Consensus 167 ~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~-~ 245 (482)
-+..+..-.-..- ......+.+..-.|...+--|+|+|.|.-.....++...|.|+ +
T Consensus 475 i~~~~r~~~~~~~----------------------~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi 532 (632)
T KOG0523|consen 475 IRTLSRQNLPIYN----------------------NTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGI 532 (632)
T ss_pred EEEecCccccccC----------------------CCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCc
Confidence 7666643211110 0111112222223334444689999998666666777777755 6
Q ss_pred CCcEee
Q 011590 246 GIPFLP 251 (482)
Q Consensus 246 g~pv~~ 251 (482)
++-|+.
T Consensus 533 ~vrVvd 538 (632)
T KOG0523|consen 533 KVRVVD 538 (632)
T ss_pred eEEEec
Confidence 676663
Done!