Query 011590
Match_columns 482
No_of_seqs 118 out of 1270
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 11:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q28_A Oxalyl-COA decarboxylas 100.0 9.3E-87 3.2E-91 710.2 42.1 463 11-482 5-470 (564)
2 2c31_A Oxalyl-COA decarboxylas 100.0 2.3E-86 7.9E-91 707.4 42.5 462 12-482 8-475 (568)
3 4feg_A Pyruvate oxidase; carba 100.0 1.8E-84 6.1E-89 696.3 46.7 455 8-482 5-470 (603)
4 3eya_A Pyruvate dehydrogenase 100.0 8.7E-85 3E-89 692.2 42.1 445 13-482 2-456 (549)
5 1ozh_A ALS, acetolactate synth 100.0 1.3E-83 4.6E-88 685.1 41.7 452 10-482 7-470 (566)
6 1ybh_A Acetolactate synthase, 100.0 4.4E-83 1.5E-87 684.7 42.8 451 12-482 10-476 (590)
7 1t9b_A Acetolactate synthase, 100.0 4.2E-83 1.4E-87 690.6 39.5 463 11-482 79-563 (677)
8 2uz1_A Benzaldehyde lyase; thi 100.0 4.1E-83 1.4E-87 681.6 37.8 455 12-482 2-471 (563)
9 2pgn_A Cyclohexane-1,2-dione h 100.0 1.5E-82 5.1E-87 680.1 40.6 451 12-482 2-474 (589)
10 1v5e_A Pyruvate oxidase; oxido 100.0 2.2E-81 7.7E-86 670.7 41.2 448 13-482 3-463 (590)
11 2iht_A Carboxyethylarginine sy 100.0 2.6E-82 9E-87 676.4 30.2 446 13-482 11-486 (573)
12 1q6z_A BFD, BFDC, benzoylforma 100.0 8.6E-81 2.9E-85 659.1 38.3 441 14-482 2-451 (528)
13 2pan_A Glyoxylate carboligase; 100.0 6.5E-81 2.2E-85 671.1 37.3 454 13-482 26-492 (616)
14 3lq1_A 2-succinyl-5-enolpyruvy 100.0 4.5E-81 1.5E-85 667.2 35.6 461 5-482 2-484 (578)
15 2x7j_A 2-succinyl-5-enolpyruvy 100.0 1.2E-80 4E-85 667.3 34.7 454 10-482 27-504 (604)
16 2wvg_A PDC, pyruvate decarboxy 100.0 1.5E-77 5.2E-82 639.4 33.8 444 13-482 2-463 (568)
17 3hww_A 2-succinyl-5-enolpyruvy 100.0 4.2E-78 1.5E-82 641.4 25.7 445 12-482 6-465 (556)
18 2vbi_A Pyruvate decarboxylase; 100.0 3.9E-77 1.3E-81 635.9 31.8 441 13-482 2-459 (566)
19 2vk8_A Pyruvate decarboxylase 100.0 8.1E-78 2.8E-82 641.1 24.8 443 12-482 2-467 (563)
20 2nxw_A Phenyl-3-pyruvate decar 100.0 1.8E-77 6.1E-82 637.8 26.5 437 11-482 18-472 (565)
21 1ovm_A Indole-3-pyruvate decar 100.0 2.9E-76 9.9E-81 628.0 33.0 437 12-482 3-458 (552)
22 2vbf_A Branched-chain alpha-ke 100.0 2.9E-74 9.8E-79 614.4 32.1 436 12-482 23-475 (570)
23 3cf4_G Acetyl-COA decarboxylas 99.7 6.2E-19 2.1E-23 157.4 3.7 129 206-340 22-167 (170)
24 1ytl_A Acetyl-COA decarboxylas 99.7 2.7E-18 9.3E-23 152.3 -1.8 101 208-310 24-142 (174)
25 1yd7_A 2-keto acid:ferredoxin 99.6 3.8E-16 1.3E-20 157.8 9.5 162 13-177 22-192 (395)
26 2c42_A Pyruvate-ferredoxin oxi 98.9 6.2E-10 2.1E-14 126.3 6.7 154 12-170 5-170 (1231)
27 2o1x_A 1-deoxy-D-xylulose-5-ph 98.6 4.4E-08 1.5E-12 104.7 7.2 55 428-482 119-179 (629)
28 2bfd_A 2-oxoisovalerate dehydr 98.4 8.6E-08 2.9E-12 96.4 4.1 53 430-482 160-218 (400)
29 1w85_A Pyruvate dehydrogenase 98.3 2E-07 7E-12 92.7 3.9 54 429-482 139-198 (368)
30 2o1s_A 1-deoxy-D-xylulose-5-ph 98.3 2.3E-07 7.9E-12 99.1 4.0 53 430-482 119-177 (621)
31 1qs0_A 2-oxoisovalerate dehydr 98.3 3.6E-07 1.2E-11 91.9 3.9 53 430-482 179-237 (407)
32 1umd_A E1-alpha, 2-OXO acid de 98.3 4.7E-07 1.6E-11 90.2 4.7 53 430-482 142-200 (367)
33 3mos_A Transketolase, TK; thia 98.3 3E-07 1E-11 97.7 3.5 52 430-481 119-177 (616)
34 2ozl_A PDHE1-A type I, pyruvat 98.2 4.9E-07 1.7E-11 89.7 4.1 53 430-482 138-196 (365)
35 3l84_A Transketolase; TKT, str 98.2 5E-07 1.7E-11 95.9 2.6 52 430-481 112-176 (632)
36 3uk1_A Transketolase; structur 98.2 5.2E-07 1.8E-11 96.9 2.7 52 430-481 153-220 (711)
37 3kom_A Transketolase; rossmann 98.2 5.5E-07 1.9E-11 96.2 2.5 52 430-481 114-181 (663)
38 2r8o_A Transketolase 1, TK 1; 98.1 8.9E-07 3E-11 95.1 2.7 52 430-481 112-179 (669)
39 2e6k_A Transketolase; structur 98.1 9.6E-07 3.3E-11 94.6 2.7 52 430-481 116-183 (651)
40 3m49_A Transketolase; alpha-be 98.1 1.1E-06 3.6E-11 94.3 2.7 52 430-481 138-205 (690)
41 2c42_A Pyruvate-ferredoxin oxi 98.1 2.6E-05 8.9E-10 88.7 14.0 97 382-482 817-986 (1231)
42 1itz_A Transketolase; calvin c 98.1 1.4E-06 4.7E-11 93.7 3.5 51 430-480 125-191 (675)
43 1gpu_A Transketolase; transfer 98.0 1.5E-06 5.2E-11 93.5 2.7 52 430-481 114-181 (680)
44 1r9j_A Transketolase; domains, 97.8 5.1E-06 1.7E-10 89.2 2.5 51 430-480 114-180 (673)
45 1o97_D Electron transferring f 97.1 0.00049 1.7E-08 66.7 5.9 113 222-341 204-319 (320)
46 1efv_A Electron transfer flavo 97.0 0.0014 4.7E-08 63.4 7.9 114 221-342 199-314 (315)
47 3glr_A NAD-dependent deacetyla 97.0 0.0021 7.3E-08 61.0 9.0 70 272-341 192-264 (285)
48 3rim_A Transketolase, TK; TPP, 96.8 0.00044 1.5E-08 74.0 2.5 51 430-480 131-201 (700)
49 1efp_A ETF, protein (electron 96.6 0.0034 1.2E-07 60.4 7.4 112 221-340 194-307 (307)
50 2ozl_B PDHE1-B, pyruvate dehyd 96.5 0.045 1.5E-06 53.5 14.5 114 52-175 62-188 (341)
51 1j8f_A SIRT2, sirtuin 2, isofo 96.5 0.0062 2.1E-07 59.0 8.0 71 271-341 214-303 (323)
52 1umd_B E1-beta, 2-OXO acid deh 96.4 0.045 1.5E-06 53.1 13.6 117 52-176 51-178 (324)
53 1w85_B Pyruvate dehydrogenase 96.1 0.024 8.3E-07 55.0 10.3 117 52-176 50-177 (324)
54 1qs0_B 2-oxoisovalerate dehydr 96.1 0.045 1.5E-06 53.4 12.2 117 52-176 52-179 (338)
55 2qtc_A Pyruvate dehydrogenase 96.0 0.003 1E-07 69.4 3.3 49 430-478 190-251 (886)
56 2bru_C NAD(P) transhydrogenase 95.7 0.052 1.8E-06 46.2 8.8 128 206-339 18-185 (186)
57 1pno_A NAD(P) transhydrogenase 95.6 0.035 1.2E-06 47.1 7.6 129 207-340 12-179 (180)
58 1d4o_A NADP(H) transhydrogenas 95.6 0.036 1.2E-06 47.2 7.7 131 207-342 11-180 (184)
59 1djl_A Transhydrogenase DIII; 95.6 0.037 1.2E-06 48.3 7.9 131 207-342 34-203 (207)
60 2r8o_A Transketolase 1, TK 1; 95.6 0.056 1.9E-06 57.8 11.1 117 52-174 402-522 (669)
61 3mos_A Transketolase, TK; thia 95.5 0.16 5.6E-06 53.6 14.3 150 16-173 319-473 (616)
62 2bfd_B 2-oxoisovalerate dehydr 95.5 0.037 1.3E-06 54.1 8.7 118 52-177 67-196 (342)
63 2hjh_A NAD-dependent histone d 95.5 0.012 4.3E-07 57.7 5.2 69 272-342 250-318 (354)
64 2yic_A 2-oxoglutarate decarbox 95.5 0.0028 9.4E-08 69.5 0.5 49 430-478 243-308 (868)
65 1q1a_A HST2 protein; ternary c 95.5 0.0092 3.2E-07 57.0 4.1 68 274-341 208-278 (289)
66 3kom_A Transketolase; rossmann 95.5 0.087 3E-06 56.2 11.9 117 52-173 403-522 (663)
67 2fsv_C NAD(P) transhydrogenase 95.4 0.037 1.3E-06 48.0 7.1 129 207-340 35-202 (203)
68 4iao_A NAD-dependent histone d 95.4 0.014 4.6E-07 59.0 5.1 70 272-343 388-457 (492)
69 1q14_A HST2 protein; histone d 95.3 0.023 8E-07 55.7 6.5 68 274-341 216-286 (361)
70 2o1x_A 1-deoxy-D-xylulose-5-ph 95.1 0.18 6.2E-06 53.5 13.3 150 13-174 321-482 (629)
71 1ik6_A Pyruvate dehydrogenase; 95.1 0.059 2E-06 53.3 8.7 116 52-176 98-225 (369)
72 2e6k_A Transketolase; structur 94.9 0.11 3.7E-06 55.4 10.6 118 52-174 397-517 (651)
73 2o1s_A 1-deoxy-D-xylulose-5-ph 94.9 0.25 8.7E-06 52.3 13.4 151 13-174 318-480 (621)
74 1s5p_A NAD-dependent deacetyla 94.8 0.023 7.7E-07 52.5 4.6 70 271-341 161-231 (235)
75 3l84_A Transketolase; TKT, str 94.8 0.1 3.5E-06 55.2 9.9 116 53-174 383-501 (632)
76 2jgd_A 2-oxoglutarate dehydrog 94.7 0.011 3.6E-07 65.4 2.1 48 431-478 320-379 (933)
77 1r9j_A Transketolase; domains, 94.6 0.16 5.4E-06 54.3 11.2 115 52-173 402-521 (673)
78 1gpu_A Transketolase; transfer 94.6 0.15 5.1E-06 54.6 10.7 114 52-173 409-529 (680)
79 2xt6_A 2-oxoglutarate decarbox 94.5 0.009 3.1E-07 67.2 1.2 48 431-478 489-553 (1113)
80 3pki_A NAD-dependent deacetyla 94.4 0.042 1.4E-06 53.3 5.5 71 271-342 200-271 (355)
81 1itz_A Transketolase; calvin c 94.3 0.17 5.9E-06 54.1 10.5 115 52-173 414-534 (675)
82 1yc5_A NAD-dependent deacetyla 94.0 0.024 8.1E-07 52.8 2.8 69 272-341 175-244 (246)
83 1ma3_A SIR2-AF2, transcription 93.9 0.028 9.7E-07 52.5 3.0 71 271-342 177-248 (253)
84 3k35_A NAD-dependent deacetyla 93.9 0.042 1.5E-06 52.7 4.3 71 271-342 200-271 (318)
85 1m2k_A Silent information regu 93.7 0.036 1.2E-06 51.6 3.3 69 272-341 172-241 (249)
86 3riy_A NAD-dependent deacetyla 93.3 0.049 1.7E-06 51.4 3.6 65 272-337 207-272 (273)
87 3m49_A Transketolase; alpha-be 93.0 0.39 1.3E-05 51.3 10.5 114 53-173 428-546 (690)
88 3uk1_A Transketolase; structur 92.9 0.46 1.6E-05 50.9 10.8 115 52-173 448-566 (711)
89 3u31_A SIR2A, transcriptional 92.4 0.038 1.3E-06 52.6 1.4 69 272-341 211-280 (290)
90 3rim_A Transketolase, TK; TPP, 92.3 0.78 2.7E-05 49.0 11.6 116 53-173 433-553 (700)
91 3hww_A 2-succinyl-5-enolpyruvy 92.3 0.29 1E-05 51.1 8.2 118 51-174 406-539 (556)
92 3ahc_A Phosphoketolase, xylulo 91.4 0.11 3.8E-06 56.3 3.7 31 431-461 174-204 (845)
93 3eya_A Pyruvate dehydrogenase 91.2 0.58 2E-05 48.7 9.0 108 63-176 411-531 (549)
94 1w85_A Pyruvate dehydrogenase 90.9 0.62 2.1E-05 45.8 8.4 113 63-176 147-269 (368)
95 1v5e_A Pyruvate oxidase; oxido 90.2 0.7 2.4E-05 48.6 8.5 110 63-175 418-540 (590)
96 2c31_A Oxalyl-COA decarboxylas 89.7 0.72 2.5E-05 48.2 8.2 106 63-174 431-547 (568)
97 1qs0_A 2-oxoisovalerate dehydr 88.0 0.58 2E-05 46.7 5.7 106 65-173 188-306 (407)
98 3c2q_A Uncharacterized conserv 87.8 2.6 9.1E-05 39.8 9.5 102 238-342 230-340 (345)
99 2q28_A Oxalyl-COA decarboxylas 87.5 1.3 4.5E-05 46.1 8.3 106 63-174 426-544 (564)
100 2pgn_A Cyclohexane-1,2-dione h 87.4 0.71 2.4E-05 48.5 6.2 149 20-174 380-547 (589)
101 3lq1_A 2-succinyl-5-enolpyruvy 86.9 0.63 2.1E-05 48.8 5.5 104 64-174 442-560 (578)
102 1ozh_A ALS, acetolactate synth 86.8 1.2 4.2E-05 46.4 7.6 106 63-174 425-543 (566)
103 2pan_A Glyoxylate carboligase; 86.3 1.7 5.8E-05 45.8 8.5 110 63-174 447-580 (616)
104 4feg_A Pyruvate oxidase; carba 86.1 1.8 6E-05 45.6 8.5 157 13-173 370-545 (603)
105 2ozl_A PDHE1-A type I, pyruvat 85.3 0.8 2.7E-05 45.0 4.9 103 65-173 147-262 (365)
106 2uz1_A Benzaldehyde lyase; thi 84.9 1.7 5.9E-05 45.2 7.6 149 19-173 374-545 (563)
107 2bfd_A 2-oxoisovalerate dehydr 83.7 2.6 9E-05 41.8 7.9 107 65-174 169-287 (400)
108 1ovm_A Indole-3-pyruvate decar 83.1 1.9 6.4E-05 44.8 6.9 106 63-174 413-532 (552)
109 1q6z_A BFD, BFDC, benzoylforma 80.6 2.2 7.7E-05 43.9 6.4 153 14-173 353-524 (528)
110 1ybh_A Acetolactate synthase, 79.4 3.5 0.00012 43.1 7.5 107 63-175 431-559 (590)
111 2x7j_A 2-succinyl-5-enolpyruvy 79.4 1.8 6.2E-05 45.5 5.3 106 63-174 460-580 (604)
112 1umd_A E1-alpha, 2-OXO acid de 79.4 8.6 0.00029 37.5 9.8 95 76-173 167-268 (367)
113 2iht_A Carboxyethylarginine sy 79.0 1.5 5.3E-05 45.7 4.5 106 63-174 441-561 (573)
114 1t9b_A Acetolactate synthase, 78.7 4.3 0.00015 43.3 7.9 106 63-174 518-637 (677)
115 2vbi_A Pyruvate decarboxylase; 75.4 1.7 6E-05 45.2 3.7 107 63-174 414-533 (566)
116 2wvg_A PDC, pyruvate decarboxy 74.5 2.5 8.4E-05 44.1 4.6 107 63-174 418-541 (568)
117 2nxw_A Phenyl-3-pyruvate decar 74.5 3.3 0.00011 43.1 5.5 104 63-173 427-541 (565)
118 2vbf_A Branched-chain alpha-ke 72.1 6.8 0.00023 40.7 7.3 107 63-174 430-551 (570)
119 2f62_A Nucleoside 2-deoxyribos 70.4 6.5 0.00022 33.5 5.5 113 219-341 9-159 (161)
120 3trj_A Phosphoheptose isomeras 68.9 37 0.0013 29.6 10.5 101 15-115 34-154 (201)
121 2vk8_A Pyruvate decarboxylase 68.0 6.2 0.00021 40.9 5.8 106 64-174 419-542 (563)
122 2m1z_A LMO0427 protein; homolo 67.7 7.7 0.00026 30.5 4.9 96 221-341 5-104 (106)
123 3rot_A ABC sugar transporter, 66.5 50 0.0017 30.2 11.6 150 14-178 113-281 (297)
124 2yic_A 2-oxoglutarate decarbox 66.1 31 0.0011 37.7 11.0 122 52-180 584-719 (868)
125 2kyr_A Fructose-like phosphotr 64.6 15 0.00053 29.0 6.1 90 226-340 15-106 (111)
126 2xt6_A 2-oxoglutarate decarbox 64.1 34 0.0011 38.6 11.0 122 52-180 829-964 (1113)
127 1e2b_A Enzyme IIB-cellobiose; 63.3 4.7 0.00016 31.7 2.9 58 219-289 4-61 (106)
128 3iz6_A 40S ribosomal protein S 62.7 33 0.0011 32.1 8.9 72 207-289 61-134 (305)
129 1hi9_A Dciaa, dipeptide transp 62.4 1.5 5.2E-05 40.9 -0.1 140 18-161 40-204 (274)
130 1tk9_A Phosphoheptose isomeras 61.4 34 0.0012 29.1 8.7 98 15-112 30-147 (188)
131 2yva_A DNAA initiator-associat 58.5 43 0.0015 28.8 8.8 100 15-114 29-148 (196)
132 2xzm_B RPS0E; ribosome, transl 57.0 32 0.0011 31.2 7.7 73 206-289 51-126 (241)
133 3u5c_A 40S ribosomal protein S 56.9 30 0.001 31.6 7.4 72 207-289 56-129 (252)
134 1x92_A APC5045, phosphoheptose 54.9 28 0.00096 30.1 7.0 96 16-112 34-150 (199)
135 3i9v_3 NADH-quinone oxidoreduc 54.5 22 0.00075 38.5 7.3 79 205-289 323-403 (783)
136 2r48_A Phosphotransferase syst 53.0 18 0.00063 28.3 4.7 82 232-338 19-100 (106)
137 3sho_A Transcriptional regulat 52.9 65 0.0022 27.3 9.0 91 17-113 29-125 (187)
138 3nbm_A PTS system, lactose-spe 52.8 13 0.00044 29.3 3.8 56 218-286 6-61 (108)
139 3fxa_A SIS domain protein; str 52.2 21 0.00072 31.0 5.7 101 203-314 29-130 (201)
140 2xbl_A Phosphoheptose isomeras 51.9 75 0.0026 27.1 9.3 97 16-112 37-153 (198)
141 3bch_A 40S ribosomal protein S 51.4 60 0.0021 29.6 8.5 72 207-289 90-163 (253)
142 1vi6_A 30S ribosomal protein S 50.4 54 0.0018 29.0 7.9 72 207-289 55-127 (208)
143 2r4q_A Phosphotransferase syst 50.3 18 0.00063 28.3 4.3 81 232-337 19-99 (106)
144 1tvm_A PTS system, galactitol- 48.3 15 0.00052 29.0 3.7 31 219-249 22-53 (113)
145 3gyb_A Transcriptional regulat 47.4 1.3E+02 0.0045 26.8 10.8 86 15-100 104-200 (280)
146 4gnr_A ABC transporter substra 46.4 43 0.0015 31.5 7.4 63 204-268 59-121 (353)
147 2e7z_A Acetylene hydratase AHY 45.5 6.3 0.00022 42.3 1.2 98 205-311 81-198 (727)
148 4au1_A Precorrin-8X methylmuta 45.0 30 0.001 31.1 5.3 57 201-257 154-212 (229)
149 2ivf_A Ethylbenzene dehydrogen 44.3 2.4 8.3E-05 47.3 -2.3 111 205-316 164-288 (976)
150 2zkq_b 40S ribosomal protein S 42.8 1E+02 0.0035 28.7 8.8 72 207-289 57-130 (295)
151 4fyk_A Deoxyribonucleoside 5'- 42.6 70 0.0024 26.7 7.0 18 15-34 19-36 (152)
152 2xhz_A KDSD, YRBH, arabinose 5 42.5 98 0.0034 26.0 8.4 95 16-114 37-135 (183)
153 2iv2_X Formate dehydrogenase H 42.4 26 0.00088 37.4 5.5 112 205-316 81-208 (715)
154 2l2q_A PTS system, cellobiose- 42.1 27 0.00093 27.2 4.2 30 220-249 6-35 (109)
155 4f06_A Extracellular ligand-bi 41.0 22 0.00074 34.2 4.2 63 204-268 56-118 (371)
156 3ahc_A Phosphoketolase, xylulo 40.8 1.5E+02 0.0052 32.1 10.9 115 53-173 492-626 (845)
157 2qu7_A Putative transcriptiona 40.5 1.9E+02 0.0064 25.9 10.7 82 15-97 108-208 (288)
158 2f62_A Nucleoside 2-deoxyribos 40.5 81 0.0028 26.6 7.2 68 14-83 26-106 (161)
159 1kqf_A FDH-N alpha, formate de 40.1 34 0.0012 38.2 6.1 112 205-316 127-265 (1015)
160 2keg_A PLNK; protein, peptide, 40.0 12 0.00041 21.2 1.2 13 432-444 6-18 (32)
161 2zxr_A Single-stranded DNA spe 39.5 52 0.0018 34.7 7.0 82 206-290 60-141 (666)
162 3l49_A ABC sugar (ribose) tran 39.5 2.1E+02 0.0071 25.6 12.3 87 15-101 109-216 (291)
163 3k9c_A Transcriptional regulat 38.5 2.2E+02 0.0075 25.6 12.6 86 14-99 111-208 (289)
164 2i2w_A Phosphoheptose isomeras 38.1 72 0.0024 27.9 6.9 98 16-113 53-169 (212)
165 3o74_A Fructose transport syst 38.0 2E+02 0.0067 25.4 10.3 86 14-99 105-203 (272)
166 2ioj_A Hypothetical protein AF 37.8 27 0.00093 28.5 3.8 34 219-255 74-107 (139)
167 3j20_B 30S ribosomal protein S 37.7 1.1E+02 0.0037 26.9 7.8 72 207-289 51-123 (202)
168 3e7d_A COBH, precorrin-8X meth 37.5 61 0.0021 28.7 6.1 56 202-257 138-195 (212)
169 3dm5_A SRP54, signal recogniti 37.2 59 0.002 32.4 6.7 70 208-283 117-188 (443)
170 1jeo_A MJ1247, hypothetical pr 36.9 97 0.0033 26.0 7.4 89 17-114 30-121 (180)
171 4fe7_A Xylose operon regulator 36.5 2.9E+02 0.01 26.4 14.7 86 14-99 124-226 (412)
172 3cpq_A 50S ribosomal protein L 36.5 70 0.0024 24.9 5.8 44 208-252 26-69 (110)
173 3gbv_A Putative LACI-family tr 35.6 2.3E+02 0.0079 25.3 10.5 150 14-178 118-289 (304)
174 3etn_A Putative phosphosugar i 35.6 66 0.0023 28.4 6.3 101 203-314 39-146 (220)
175 3td9_A Branched chain amino ac 35.5 65 0.0022 30.4 6.7 63 204-268 65-127 (366)
176 3dzc_A UDP-N-acetylglucosamine 35.4 1.3E+02 0.0044 29.1 9.0 90 18-110 42-143 (396)
177 2qtc_A Pyruvate dehydrogenase 35.2 97 0.0033 33.9 8.5 116 52-173 562-692 (886)
178 3v7e_A Ribosome-associated pro 35.0 47 0.0016 24.4 4.3 45 208-253 16-60 (82)
179 1q16_A Respiratory nitrate red 34.9 15 0.00051 41.9 2.1 111 205-316 164-288 (1247)
180 3sho_A Transcriptional regulat 34.7 62 0.0021 27.4 5.8 101 203-314 24-125 (187)
181 2xhz_A KDSD, YRBH, arabinose 5 34.2 40 0.0014 28.5 4.5 71 204-286 35-105 (183)
182 3c3k_A Alanine racemase; struc 34.1 2.5E+02 0.0087 25.0 10.5 84 15-98 110-206 (285)
183 2jgd_A 2-oxoglutarate dehydrog 34.1 2.3E+02 0.0079 31.1 11.3 119 52-178 652-785 (933)
184 3jvd_A Transcriptional regulat 34.0 2.7E+02 0.0091 25.7 10.8 85 15-99 160-254 (333)
185 2lbw_A H/ACA ribonucleoprotein 33.9 1E+02 0.0035 24.5 6.5 46 207-252 24-69 (121)
186 2k53_A A3DK08 protein; NESG, C 33.9 12 0.0004 27.5 0.7 55 12-67 5-65 (76)
187 3j21_Z 50S ribosomal protein L 33.9 91 0.0031 23.7 6.0 44 208-252 20-63 (99)
188 1m3s_A Hypothetical protein YC 33.6 1.2E+02 0.004 25.6 7.5 88 17-113 27-117 (186)
189 3bfj_A 1,3-propanediol oxidore 33.1 48 0.0016 32.3 5.3 63 218-285 33-100 (387)
190 1ofu_A FTSZ, cell division pro 32.9 17 0.0006 34.6 2.0 76 206-284 84-164 (320)
191 1vim_A Hypothetical protein AF 32.6 1E+02 0.0036 26.5 7.0 89 17-114 37-128 (200)
192 3fxa_A SIS domain protein; str 32.3 84 0.0029 27.0 6.4 94 17-114 34-131 (201)
193 3ff4_A Uncharacterized protein 31.9 54 0.0018 26.2 4.5 38 19-56 73-110 (122)
194 3brs_A Periplasmic binding pro 31.7 2.7E+02 0.0094 24.7 11.9 94 15-108 115-223 (289)
195 3n0x_A Possible substrate bind 31.5 74 0.0025 30.2 6.4 63 204-268 57-121 (374)
196 1w41_A 50S ribosomal protein L 31.3 95 0.0032 23.6 5.7 43 208-251 21-63 (101)
197 1j8m_F SRP54, signal recogniti 31.2 1.2E+02 0.0042 28.2 7.6 48 205-252 112-159 (297)
198 1ma3_A SIR2-AF2, transcription 30.7 31 0.0011 31.5 3.3 26 206-231 3-28 (253)
199 3n0w_A ABC branched chain amin 30.6 89 0.0031 29.6 6.8 62 204-267 57-120 (379)
200 1fpz_A Cyclin-dependent kinase 30.4 2.4E+02 0.0083 24.3 9.2 80 20-99 63-157 (212)
201 4a3s_A 6-phosphofructokinase; 30.3 58 0.002 30.9 5.2 41 16-56 81-121 (319)
202 3hh1_A Tetrapyrrole methylase 30.3 96 0.0033 24.2 5.8 45 206-250 67-112 (117)
203 1ti6_A Pyrogallol hydroxytrans 30.1 66 0.0023 35.1 6.3 106 205-311 115-250 (875)
204 3qk7_A Transcriptional regulat 30.0 3E+02 0.01 24.6 12.1 85 14-98 111-209 (294)
205 2vpz_A Thiosulfate reductase; 29.6 15 0.0005 39.7 0.9 93 205-311 118-237 (765)
206 2xzm_U Ribosomal protein L7AE 29.5 1.2E+02 0.004 24.4 6.2 45 207-251 28-72 (126)
207 3ox4_A Alcohol dehydrogenase 2 29.4 19 0.00065 35.3 1.6 75 206-285 17-96 (383)
208 3trh_A Phosphoribosylaminoimid 28.3 1.5E+02 0.0051 25.1 6.8 76 12-111 17-93 (169)
209 3czc_A RMPB; alpha/beta sandwi 27.6 28 0.00096 27.2 2.0 30 219-248 19-49 (110)
210 1w5f_A Cell division protein F 27.4 19 0.00064 34.9 1.1 77 206-285 94-175 (353)
211 1pfk_A Phosphofructokinase; tr 27.2 58 0.002 30.9 4.5 42 15-56 81-122 (320)
212 1zxx_A 6-phosphofructokinase; 27.2 58 0.002 30.9 4.5 42 15-56 80-121 (319)
213 4eyg_A Twin-arginine transloca 27.2 81 0.0028 29.6 5.8 62 204-267 56-117 (368)
214 3kl4_A SRP54, signal recogniti 26.9 1E+02 0.0035 30.5 6.5 49 206-254 112-160 (433)
215 3g85_A Transcriptional regulat 26.9 3.3E+02 0.011 24.1 11.5 86 14-99 112-211 (289)
216 1rrm_A Lactaldehyde reductase; 26.9 32 0.0011 33.5 2.8 63 218-285 31-96 (386)
217 2k5e_A Uncharacterized protein 26.9 10 0.00035 27.5 -0.6 50 12-62 7-62 (73)
218 2h3h_A Sugar ABC transporter, 26.8 3.5E+02 0.012 24.4 11.4 84 15-98 107-204 (313)
219 3hut_A Putative branched-chain 26.8 1.3E+02 0.0045 28.0 7.2 49 204-254 56-104 (358)
220 3dbi_A Sugar-binding transcrip 26.5 2.9E+02 0.01 25.4 9.6 86 14-99 166-265 (338)
221 2fep_A Catabolite control prot 26.4 3.5E+02 0.012 24.1 12.9 84 15-98 119-217 (289)
222 3on1_A BH2414 protein; structu 26.2 1.3E+02 0.0044 22.9 5.7 43 208-251 23-65 (101)
223 3mfq_A TROA, high-affinity zin 26.1 87 0.003 28.9 5.5 50 201-251 194-243 (282)
224 3v7q_A Probable ribosomal prot 26.0 1.3E+02 0.0044 22.9 5.7 44 208-252 24-67 (101)
225 2yva_A DNAA initiator-associat 25.8 57 0.002 27.9 4.0 45 206-251 29-78 (196)
226 2ffh_A Protein (FFH); SRP54, s 25.6 1.6E+02 0.0053 29.1 7.5 48 206-253 113-160 (425)
227 4dxd_A Cell division protein F 25.5 34 0.0012 33.5 2.5 74 206-285 90-171 (396)
228 3ot5_A UDP-N-acetylglucosamine 25.3 1.4E+02 0.005 28.9 7.3 91 18-111 44-147 (403)
229 3i09_A Periplasmic branched-ch 25.2 1.1E+02 0.0036 29.0 6.2 48 205-254 56-103 (375)
230 1xmp_A PURE, phosphoribosylami 25.2 1.1E+02 0.0037 26.0 5.3 72 12-111 22-98 (170)
231 1rq2_A Cell division protein F 25.1 35 0.0012 33.3 2.6 74 206-285 84-165 (382)
232 3kkq_A RAS-related protein M-R 24.9 1.2E+02 0.0042 24.8 6.0 44 209-252 113-160 (183)
233 1vlj_A NADH-dependent butanol 24.9 60 0.002 31.9 4.3 75 208-285 31-109 (407)
234 1eu1_A Dimethyl sulfoxide redu 24.8 74 0.0025 34.2 5.4 138 205-342 87-257 (780)
235 3con_A GTPase NRAS; structural 24.7 1.5E+02 0.0051 24.5 6.5 36 218-253 125-163 (190)
236 1o4v_A Phosphoribosylaminoimid 24.6 1E+02 0.0035 26.5 5.1 77 12-112 24-101 (183)
237 3l6u_A ABC-type sugar transpor 24.6 3.6E+02 0.012 23.8 9.7 151 15-179 114-285 (293)
238 2vxy_A FTSZ, cell division pro 24.4 37 0.0013 33.1 2.6 72 206-285 84-165 (382)
239 3bzy_B ESCU; auto cleavage pro 24.3 60 0.002 24.1 3.2 32 219-253 16-47 (83)
240 3v2d_S 50S ribosomal protein L 24.3 79 0.0027 24.9 4.0 42 13-54 66-112 (112)
241 2ale_A SNU13, NHP2/L7AE family 24.2 91 0.0031 25.3 4.6 45 207-251 36-80 (134)
242 2d59_A Hypothetical protein PH 24.2 1.2E+02 0.0043 24.6 5.6 41 16-56 89-129 (144)
243 3r8s_O 50S ribosomal protein L 24.0 71 0.0024 25.4 3.8 42 13-54 70-116 (116)
244 3etn_A Putative phosphosugar i 23.9 1.7E+02 0.0059 25.6 6.9 95 16-114 43-147 (220)
245 2r75_1 Cell division protein F 23.9 36 0.0012 32.6 2.4 77 206-285 80-161 (338)
246 3abi_A Putative uncharacterize 23.7 90 0.0031 29.9 5.4 83 17-101 68-151 (365)
247 2nap_A Protein (periplasmic ni 23.4 1.2E+02 0.004 32.2 6.6 75 205-288 82-177 (723)
248 2duw_A Putative COA-binding pr 23.4 1.2E+02 0.0042 24.7 5.4 41 16-56 82-122 (145)
249 1m3s_A Hypothetical protein YC 23.4 92 0.0031 26.3 4.8 67 203-286 22-88 (186)
250 2ce2_X GTPase HRAS; signaling 23.3 1.5E+02 0.0052 23.4 6.2 36 218-253 107-145 (166)
251 1jeo_A MJ1247, hypothetical pr 23.2 82 0.0028 26.4 4.5 95 204-315 26-121 (180)
252 1ivn_A Thioesterase I; hydrola 23.1 1.4E+02 0.0047 24.9 6.0 46 206-251 86-138 (190)
253 2vaw_A FTSZ, cell division pro 23.1 33 0.0011 33.6 2.0 77 206-285 84-165 (394)
254 3k4h_A Putative transcriptiona 23.0 3.9E+02 0.013 23.6 12.5 85 15-99 117-215 (292)
255 1ls1_A Signal recognition part 23.0 2.1E+02 0.0073 26.3 7.7 47 206-252 113-159 (295)
256 2hjh_A NAD-dependent histone d 22.9 56 0.0019 31.5 3.6 25 206-230 34-58 (354)
257 2hy5_A Putative sulfurtransfer 22.8 1.3E+02 0.0043 24.0 5.3 78 208-285 21-129 (130)
258 3u5e_c L32, RP73, YL38, 60S ri 22.8 1.5E+02 0.0051 22.7 5.5 43 208-251 27-69 (105)
259 3h6g_A Glutamate receptor, ion 22.4 1E+02 0.0035 29.5 5.5 55 210-268 63-117 (395)
260 1hqk_A 6,7-dimethyl-8-ribityll 22.3 3.4E+02 0.012 22.5 8.8 63 17-79 31-112 (154)
261 1u11_A PURE (N5-carboxyaminoim 22.2 1.5E+02 0.0052 25.4 5.7 74 14-111 34-108 (182)
262 1xbi_A 50S ribosomal protein L 22.1 1.2E+02 0.0041 24.0 4.9 45 207-251 33-77 (120)
263 4f11_A Gamma-aminobutyric acid 22.1 96 0.0033 30.1 5.3 61 206-268 71-133 (433)
264 3lop_A Substrate binding perip 21.9 1.4E+02 0.0046 28.1 6.2 60 205-267 58-119 (364)
265 3cnb_A DNA-binding response re 21.8 2.7E+02 0.0092 21.2 8.4 63 45-112 26-94 (143)
266 1v4v_A UDP-N-acetylglucosamine 21.8 4.7E+02 0.016 24.2 10.2 92 17-110 21-123 (376)
267 3hl0_A Maleylacetate reductase 21.7 50 0.0017 31.8 3.0 74 205-285 19-95 (353)
268 1pq3_A Arginase II, mitochondr 21.5 1.3E+02 0.0044 28.1 5.8 60 149-220 206-265 (306)
269 3k35_A NAD-dependent deacetyla 21.3 68 0.0023 30.4 3.7 26 205-230 31-56 (318)
270 3t7y_A YOP proteins translocat 21.3 64 0.0022 24.7 2.9 32 219-253 31-62 (97)
271 2zay_A Response regulator rece 21.2 2.9E+02 0.0099 21.3 7.5 102 43-159 24-130 (147)
272 1rvv_A Riboflavin synthase; tr 21.2 3.6E+02 0.012 22.4 8.8 62 18-79 32-112 (154)
273 2fp4_A Succinyl-COA ligase [GD 21.1 1.5E+02 0.005 27.8 6.0 69 15-83 163-246 (305)
274 3ia7_A CALG4; glycosysltransfe 20.9 5E+02 0.017 24.1 10.3 87 16-110 20-132 (402)
275 1vim_A Hypothetical protein AF 20.7 1.1E+02 0.0038 26.3 4.9 94 204-314 33-127 (200)
276 3ca8_A Protein YDCF; two domai 20.6 1.3E+02 0.0044 27.6 5.4 44 205-248 48-113 (266)
277 3t5g_A GTP-binding protein RHE 20.6 1.3E+02 0.0043 24.7 5.1 43 211-253 103-149 (181)
278 3iz5_f 60S ribosomal protein L 20.4 1.9E+02 0.0066 22.5 5.7 44 208-252 31-74 (112)
279 3brq_A HTH-type transcriptiona 20.4 4.4E+02 0.015 23.2 10.5 84 15-98 125-222 (296)
280 2yv5_A YJEQ protein; hydrolase 20.3 2.4E+02 0.0082 26.1 7.4 52 203-254 94-150 (302)
281 2vt1_B Surface presentation of 20.3 69 0.0024 24.3 2.9 32 219-253 16-47 (93)
282 3vk5_A MOEO5; TIM barrel, tran 20.3 4.7E+02 0.016 24.1 9.1 52 205-256 52-107 (286)
283 2o20_A Catabolite control prot 20.3 4.9E+02 0.017 23.7 12.3 83 15-98 166-261 (332)
284 4a18_G RPL30; ribosome, eukary 20.2 1.9E+02 0.0064 22.1 5.5 43 208-251 27-69 (104)
285 3hs3_A Ribose operon repressor 20.2 2.3E+02 0.008 25.2 7.3 84 14-99 108-201 (277)
286 2pjk_A 178AA long hypothetical 20.2 76 0.0026 27.1 3.5 50 232-286 39-90 (178)
287 1q1a_A HST2 protein; ternary c 20.2 65 0.0022 30.0 3.3 26 205-230 5-32 (289)
288 3m1r_A Formimidoylglutamase; s 20.1 1.7E+02 0.006 27.5 6.4 60 148-220 223-282 (322)
289 3jzd_A Iron-containing alcohol 20.0 56 0.0019 31.5 2.9 74 205-285 21-97 (358)
No 1
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=9.3e-87 Score=710.15 Aligned_cols=463 Identities=41% Similarity=0.722 Sum_probs=397.7
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+..++++++|++.|+++||+||||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 5 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N 84 (564)
T 2q28_A 5 LQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLN 84 (564)
T ss_dssp CCEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHH
T ss_pred cccCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHH
Confidence 45579999999999999999999999999999999998778999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
+++||++|+.+++|||+|+|++++...+ ++.+|++||..+|+++|||++++++++++++.+++|++.|.++|||||||
T Consensus 85 ~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 164 (564)
T 2q28_A 85 GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYL 164 (564)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 9999999999999999999999998877 68999999999999999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCc
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~p 248 (482)
+||.|++.++++.... ..+. .+ ...+...+.++++.+++++++|.+||||+|++|.++.++++.+++.+|||++|+|
T Consensus 165 ~iP~dv~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~P 241 (564)
T 2q28_A 165 DLPANVLAATMEKDEA-LTTI-VK-VENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIP 241 (564)
T ss_dssp EEEHHHHHCEEEHHHH-HHTC-CC-CSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCC
T ss_pred EcCHHHhhcccccccc-cccc-cc-ccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCC
Confidence 9999998776543210 0100 00 0000112235678899999999999999999999998889999999999999999
Q ss_pred EeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-CceeEec
Q 011590 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHLGLVG 327 (482)
Q Consensus 249 v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~~i~~ 327 (482)
|++|+++||.+|++||+++|...++++++||+||.||+++++..++++ ..|.+++++||||.|+.+++... .++.+++
T Consensus 242 v~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 320 (564)
T 2q28_A 242 FLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAHGK-KGWAADTQFIQLDIEPQEIDSNRPIAVPVVG 320 (564)
T ss_dssp EEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGT-TTSCTTCEEEEEESCGGGTTSSSCCSEEEES
T ss_pred EEeccCccccCCCCChhhcChHHHhHhhcCCEEEEECCcccccccccc-cccCCCCeEEEEeCCHHHhcCCCCCCeEEEc
Confidence 999999999999999999999888899999999999999987655555 55667889999999999997665 4999999
Q ss_pred cHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeCch
Q 011590 328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA 407 (482)
Q Consensus 328 D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~eg~ 407 (482)
|++.+|++|.+.++.... .....|.+.+.+.++++..........+..++++.++++.|++.++ .|++.++++||+
T Consensus 321 d~~~~l~~L~~~l~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~d~ivv~dg~ 396 (564)
T 2q28_A 321 DIASSMQGMLAELKQNTF--TTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLR--ENQDIYLVNEGA 396 (564)
T ss_dssp CHHHHHHHHHHHHHHSCC--CCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHT--TCTTCEEEEESS
T ss_pred CHHHHHHHHHHHhhhcCc--CCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhc--CCCCEEEEECCc
Confidence 999999999988765311 1245687776655544432222212223457888889999988883 156788898998
Q ss_pred hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 408 NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
++.++.+.++....|++++.++++|+||+++|+|+|++++ |+++||+++|||||+|+.|||+|++|+++|+++|
T Consensus 397 ~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv 470 (564)
T 2q28_A 397 NTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIV 470 (564)
T ss_dssp HHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 8888888777778889999898999999999999999999 8999999999999999999999999999998764
No 2
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=2.3e-86 Score=707.37 Aligned_cols=462 Identities=41% Similarity=0.744 Sum_probs=398.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
..++++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 8 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~ 87 (568)
T 2c31_A 8 ELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNG 87 (568)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 56899999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
++||++|+.+++|||+|+|+++....+ ++.+|++||..+|++++||++++++++++++.+++|++.|.++|||||||+
T Consensus 88 ~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~ 167 (568)
T 2c31_A 88 VTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVD 167 (568)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEEe
Confidence 999999999999999999999999887 689999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
||.|++.++++......... + ...+...+.++++.+++++++|.+||||+|++|+++.++++.+++.+|||++|+||
T Consensus 168 iP~dv~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv 244 (568)
T 2c31_A 168 LPAKLFGQTISVEEANKLLF--K-PIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF 244 (568)
T ss_dssp EETHHHHCEEEHHHHHHHCC--C-CSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE
T ss_pred CCHHHhhccccccccccccc--c-ccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCE
Confidence 99999877655321000000 0 00011233567788999999999999999999999988899999999999999999
Q ss_pred eeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCC-CCCcEEEEeCCchhhcccC-CceeEec
Q 011590 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWS-KDVKFVLVDVCKEEIELRK-PHLGLVG 327 (482)
Q Consensus 250 ~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-~~~~ii~id~d~~~~~~~~-~~~~i~~ 327 (482)
++|+++||.+|++||+++|...++++++||+||.||+++++..++++...|. +++++||||.|+.+++..+ .++.+++
T Consensus 245 ~~t~~~~g~~~~~~p~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~ 324 (568)
T 2c31_A 245 LPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVG 324 (568)
T ss_dssp EECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEES
T ss_pred EecccccccCCCCChhhcchHHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeC
Confidence 9999999999999999999988889999999999999998776656555565 6889999999999997665 4999999
Q ss_pred cHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcC--CCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590 328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKD--VVPFNFMTPMRIIRDAILGVGSPAPILVSE 405 (482)
Q Consensus 328 D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e 405 (482)
|++.+|++|.+.++... .....|.+.+.+.++++........... ..++++..+++.|++.++ . |++.++++|
T Consensus 325 d~~~~l~~L~~~l~~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~~iv~~d 399 (568)
T 2c31_A 325 DIKSAVSLLRKALKGAP---KADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML-A-NPDISLVNE 399 (568)
T ss_dssp CHHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHH-H-CCSSEEEEE
T ss_pred CHHHHHHHHHHhhhhcC---CCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhc-C-CCCeEEEEC
Confidence 99999999998875431 1245687766555444332222111122 456888889999988873 1 567889999
Q ss_pred chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|+++.++.+.++....|++++.++++|+||+++|+|+|++++ |+++||+++|||||+|+.|||+|++|+++|+++|
T Consensus 400 g~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~~iv 475 (568)
T 2c31_A 400 GANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYNLPVTVI 475 (568)
T ss_dssp SSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCEEEE
T ss_pred ChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEE
Confidence 988888888777778889999999999999999999999999 8999999999999999999999999999998764
No 3
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=1.8e-84 Score=696.33 Aligned_cols=455 Identities=22% Similarity=0.380 Sum_probs=391.0
Q ss_pred cCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCC
Q 011590 8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85 (482)
Q Consensus 8 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~G 85 (482)
++++.+++++++|++.|+++||+||||+||+.+++|+++|.+ .+|++|.++||++|+|||+||+|+||||+||++|+|
T Consensus 5 ~~~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsG 84 (603)
T 4feg_A 5 QTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAG 84 (603)
T ss_dssp ----CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred CCCcCeeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCC
Confidence 445678999999999999999999999999999999999986 479999999999999999999999999999999999
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCce
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG 165 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gP 165 (482)
||++|+++||++|+.+++|||+|+|++++...+++.+|++||..+|++++||++++.+++++++.+++||+.|.+ ++||
T Consensus 85 pG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GP 163 (603)
T 4feg_A 85 PGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGV 163 (603)
T ss_dssp HHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSE
T ss_pred chHHHHHHHHHHHHHcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 5699
Q ss_pred EEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh
Q 011590 166 CYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (482)
Q Consensus 166 v~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~ 245 (482)
|||+||.|++..+++......... .......+.++++.+++++++|.+||||+|++|.|+ +++.+++.+|||++
T Consensus 164 V~l~iP~dv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~ 237 (603)
T 4feg_A 164 AVVQIPVDLPWQQIPAEDWYASAN----SYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTL 237 (603)
T ss_dssp EEEEEETTGGGSEEETTTCCCCGG----GCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHH
T ss_pred EEEEeChhhhhccCCccccccccc----ccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHH
Confidence 999999999988875432110000 000123445678899999999999999999999998 57899999999999
Q ss_pred CCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590 246 GIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL 318 (482)
Q Consensus 246 g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~ 318 (482)
|+||++|++|||.||++||+|+|. ..++++++||+||.||+++++. .+...|++++++||||.|+.+++.
T Consensus 238 ~~PV~~t~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~~~ 314 (603)
T 4feg_A 238 KIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKLGK 314 (603)
T ss_dssp TCCEEECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGTTS
T ss_pred CCCEEEcCccccCCCCCChhhcccCcccCcHHHHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHhCC
Confidence 999999999999999999999985 3567899999999999999852 223346678999999999999976
Q ss_pred cC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCC
Q 011590 319 RK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397 (482)
Q Consensus 319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 397 (482)
.. +++.+++|++.+|++|.+.+... ....|.+.+.+.+++|.............++++.++++.|++.+ +
T Consensus 315 ~~~~~~~i~~D~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l----~ 385 (603)
T 4feg_A 315 RHKTDIAVLADAQKTLAAILAQVSER-----ESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIA----E 385 (603)
T ss_dssp SSCCSEEEESCHHHHHHHHHHTCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHC----C
T ss_pred ccCCCEEEEeCHHHHHHHHHHhhhcc-----CChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhC----C
Confidence 54 59999999999999999987643 23457766555555554433332233456789999999999988 9
Q ss_pred CCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 398 PAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 398 ~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
++++++.| |.+..|..++ ++...+++|+.++++|+||+++|+|+|++++.|+++||+++|||||+|+.|||+|+++++
T Consensus 386 ~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~ 464 (603)
T 4feg_A 386 PDAIYSIDVGDINLNANRH-LKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYH 464 (603)
T ss_dssp TTCEEEECSSHHHHHHHHH-CCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTT
T ss_pred CCCEEEECCchHHHHHHHh-ceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHC
Confidence 99999988 5566666664 577788899999899999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
+|+++|
T Consensus 465 lp~~~v 470 (603)
T 4feg_A 465 LPVINV 470 (603)
T ss_dssp CCCEEE
T ss_pred cCeEEE
Confidence 998764
No 4
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=8.7e-85 Score=692.17 Aligned_cols=445 Identities=20% Similarity=0.284 Sum_probs=385.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++|+|++.|+++||+||||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 4799999999999999999999999999999999986 489999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP 171 (482)
++||++|+.+++|||+|+|+++....+.+.+|++||..+|+++|||++++.+++++++.+++|++.|.++ +|||||+||
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP 160 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLN-RGVSVVVLP 160 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHT-TSEEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhC-CCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 599999999
Q ss_pred cchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 172 TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 172 ~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.|++..+++........ ....+...++++.+++++++|.+||||+|++|.|+ .++.+++.+|||++|+||++
T Consensus 161 ~dv~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~--~~a~~~l~~lae~~~~Pv~~ 232 (549)
T 3eya_A 161 GDVALKPAPEGATMHWY------HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGC--AGAHKELVEFAGKIKAPIVH 232 (549)
T ss_dssp HHHHTSBCCTTCCCCCC------CCCCCEEECCHHHHHHHHHHHHTCCSEEEEECGGG--TTCHHHHHHHHHHHTCCEEE
T ss_pred hhHhhcccCcccccccc------ccCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCc--hHHHHHHHHHHHHhCCCEEE
Confidence 99998887643211000 00112234567899999999999999999999998 47889999999999999999
Q ss_pred CCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-Cce
Q 011590 252 TPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-PHL 323 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~~~ 323 (482)
|++|||.||++||+++|. ..++++++||+||.||+++++.. .+++++++||||.|+.+++... .++
T Consensus 233 t~~gkg~~~~~hp~~~G~~G~~~~~~~~~~~~~aDlvl~iG~~~~~~~------~~~~~~~~i~id~d~~~~~~~~~~~~ 306 (549)
T 3eya_A 233 ALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRA------FYPTDAKIIQIDINPASIGAHSKVDM 306 (549)
T ss_dssp CGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCCGG------GSCSSSEEEEEESCGGGTTSSSCCSE
T ss_pred CCccCcCCCCCCcccccCCCCCCCHHHHHHHHhCCEEEEECCCCCccc------cCCCCCeEEEEeCCHHHhCCCCCCCe
Confidence 999999999999999984 35678999999999999987532 1356789999999999997654 599
Q ss_pred eEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEE
Q 011590 324 GLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403 (482)
Q Consensus 324 ~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v 403 (482)
.+++|++.+|++|.+.+... ....|.+.+.+.++++....+........++++..+++.|++.+ +++++++
T Consensus 307 ~i~~d~~~~l~~L~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ivv 377 (549)
T 3eya_A 307 ALVGDIKSTLRALLPLVEEK-----ADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFA----ADDAIFT 377 (549)
T ss_dssp EEECCHHHHHHHHGGGSCCC-----CCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHS----CTTCEEE
T ss_pred EEEeCHHHHHHHHHHhcccc-----CcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhC----CCCCEEE
Confidence 99999999999999887643 23468776655555554433322222345788899999999988 9999999
Q ss_pred eC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 404 SE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 404 ~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
.| |.+..|..++ ++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||||+|+.|||+|++|+++|+++|
T Consensus 378 ~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 456 (549)
T 3eya_A 378 CDVGTPTVWAARY-LKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIV 456 (549)
T ss_dssp ECTTHHHHHHHHH-CCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred EcCcHHHHHHHHh-CccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEE
Confidence 88 5556666554 577788999999899999999999999999999999999999999999999999999999998764
No 5
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=1.3e-83 Score=685.09 Aligned_cols=452 Identities=24% Similarity=0.373 Sum_probs=379.8
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
....++++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 7 ~~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~ 86 (566)
T 1ozh_A 7 VRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCS 86 (566)
T ss_dssp CEEESCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGGSSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred ccccCcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHH
Confidence 34458999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
|+++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||++++.+++++++.+++|++.|.++|||||||+
T Consensus 87 N~~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~ 166 (566)
T 1ozh_A 87 NLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVS 166 (566)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
||.|++.++.+..... .+ .....+.++++.+++++++|.+||||+|++|+++.++++.+++.+|||++|+||
T Consensus 167 iP~dv~~~~~~~~~~~-~~-------~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv 238 (566)
T 1ozh_A 167 LPQDVVDGPVSGKVLP-AS-------GAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPV 238 (566)
T ss_dssp EEHHHHHSCEEECCCC-CC-------CSCEECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCE
T ss_pred eChhhhhccccccccc-cc-------cccCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCE
Confidence 9999987765421100 00 011123566788999999999999999999999998999999999999999999
Q ss_pred eeCCCCCCCCCCCCC-cccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccC
Q 011590 250 LPTPMGKGLLPDTHP-LAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRK 320 (482)
Q Consensus 250 ~~t~~~~g~~~~~hp-~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~ 320 (482)
++|+++||.+|++|| +++|. ..++++++||+||.||+++..+.. ..| .+++++||||.|+.+++...
T Consensus 239 ~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~----~~~~~~~~~~i~id~d~~~~~~~~ 314 (566)
T 1ozh_A 239 TSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEP----AMWNSGNATLVHIDVLPAYEERNY 314 (566)
T ss_dssp EECGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESCCGGGSCG----GGTCCSCSEEEEEESSCCCCBTTB
T ss_pred EEccccCCcCCCCChHhhcCCCcccCCHHHHHHHHhCCEEEEECCCCCcCCc----cccCCCCCcEEEEeCCHHHhCCCC
Confidence 999999999999999 99874 246788999999999996543222 223 24689999999999997665
Q ss_pred -CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCC-CCcccHHHHHHHHHhccCCC
Q 011590 321 -PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVP-FNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 321 -~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~ 398 (482)
+++.+.+|++.+|++|.+.+... .....|.+.+.+.++++.............+ +++..+++.|++.+ ++
T Consensus 315 ~~~~~i~~d~~~~l~~L~~~l~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l----~~ 386 (566)
T 1ozh_A 315 TPDVELVGDIAGTLNKLAQNIDHR----LVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIV----NS 386 (566)
T ss_dssp CCSEEEESCHHHHHHHHHHTCCSC----CCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHC----CT
T ss_pred CCCEEEEeCHHHHHHHHHHhcccc----CCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhC----CC
Confidence 59999999999999999877532 1224587766555444322111111122345 88888999999888 99
Q ss_pred CcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCc
Q 011590 399 APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCII 477 (482)
Q Consensus 399 ~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l 477 (482)
+++++.| |.+..|..+ +++...|++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++++
T Consensus 387 ~~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l 465 (566)
T 1ozh_A 387 DVTLTVDMGSFHIWIAR-YLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKA 465 (566)
T ss_dssp TEEEEECSSHHHHHHHH-TGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTC
T ss_pred CCEEEEcCcHHHHHHHH-hcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCC
Confidence 9999988 555566655 45777899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 011590 478 MISSI 482 (482)
Q Consensus 478 ~i~~~ 482 (482)
|+++|
T Consensus 466 ~~~iv 470 (566)
T 1ozh_A 466 NVLHL 470 (566)
T ss_dssp CEEEE
T ss_pred CcEEE
Confidence 98764
No 6
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=4.4e-83 Score=684.69 Aligned_cols=451 Identities=25% Similarity=0.403 Sum_probs=384.2
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 89 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHH
Confidence 45799999999999999999999999999999999986 46999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||++++++++++++.+++|++.|.++|||||||+|
T Consensus 90 ~~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~i 169 (590)
T 1ybh_A 90 LVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDV 169 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred HHHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChh--H---HHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh
Q 011590 171 PTDVLHQTISVS--E---AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245 (482)
Q Consensus 171 P~dv~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~ 245 (482)
|.|++..+++.. . ..... +...+.++++.+++++++|.+||||+|++|+++.+++ +++.+|||++
T Consensus 170 P~dv~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~~ 239 (590)
T 1ybh_A 170 PKDIQQQLAIPNWEQAMRLPGYM--------SRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVELT 239 (590)
T ss_dssp EHHHHHCEECCCTTCCCCCHHHH--------HHSCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHHH
T ss_pred CcchhhhhcccccccccccccCC--------CCCCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHHh
Confidence 999987755311 0 01110 1112345678899999999999999999999998766 8999999999
Q ss_pred CCcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc
Q 011590 246 GIPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL 318 (482)
Q Consensus 246 g~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~ 318 (482)
|+||++|+++||+||++||+++|. ..++++++||+||.||+++++..+ +++..|.++.++||||.|+.+++.
T Consensus 240 ~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~ 318 (590)
T 1ybh_A 240 GIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVT-GKLEAFASRAKIVHIDIDSAEIGK 318 (590)
T ss_dssp CCCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHHH-SSGGGTTTTSEEEEEESCTTTTTS
T ss_pred CCCEEEchhhcCcCCCCCchhcCCcccccCHHHHHHHHhCCEEEEEcCCCCcccc-CcccccCCCCeEEEEECCHHHhCC
Confidence 999999999999999999999884 346788999999999999986543 444456677899999999999976
Q ss_pred cC-CceeEeccHHHHHHHHHHhhhcCCCC-CCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccC
Q 011590 319 RK-PHLGLVGDAKKVLEMINKEIKDEPFC-LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 396 (482)
Q Consensus 319 ~~-~~~~i~~D~~~~l~~L~~~l~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 396 (482)
.. .++.+++|++.+|++|.+.+...... ......|.+.+.+.++++.. .......++++..+++.|++.+
T Consensus 319 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~l~~~l---- 390 (590)
T 1ybh_A 319 NKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPL----SFKTFGEAIPPQYAIKVLDELT---- 390 (590)
T ss_dssp SSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHSCC----CCCCCTTBCCHHHHHHHHHHHT----
T ss_pred CcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhhhh----hcccccCCcCHHHHHHHHHHhC----
Confidence 55 59999999999999999887542100 00234576655443332210 0111234578888999999888
Q ss_pred CCCcEEEeCchh-HHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHc
Q 011590 397 SPAPILVSEGAN-TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC 475 (482)
Q Consensus 397 ~~~~i~v~eg~~-~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~ 475 (482)
|++++++.|.++ ..|. ..+++...+++|+.++++|+||+++|+|+|+++|.|+++||+++|||||+|+.|||+|++++
T Consensus 391 p~~~ivv~d~G~~~~~~-~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~ 469 (590)
T 1ybh_A 391 DGKAIISTGVGQHQMWA-AQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVE 469 (590)
T ss_dssp TTCCEEEECSSHHHHHH-HHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHT
T ss_pred CCCCEEEEcCcHHHHHH-HHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHh
Confidence 999999998554 4444 44568788899999999999999999999999999999999999999999999999999999
Q ss_pred CcccccC
Q 011590 476 IIMISSI 482 (482)
Q Consensus 476 ~l~i~~~ 482 (482)
++|+++|
T Consensus 470 ~l~~~iv 476 (590)
T 1ybh_A 470 NLPVKVL 476 (590)
T ss_dssp TCCEEEE
T ss_pred CCCcEEE
Confidence 9997654
No 7
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=4.2e-83 Score=690.56 Aligned_cols=463 Identities=24% Similarity=0.376 Sum_probs=381.7
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
...++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 79 ~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~ 158 (677)
T 1t9b_A 79 FVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGAT 158 (677)
T ss_dssp TTTCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHH
T ss_pred ccCCCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHH
Confidence 446799999999999999999999999999999999975 5799999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEE
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLD 169 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~ 169 (482)
|+++||++|+.+++|||+|+|++++..++.+.+|++||..++++++||++++++++++++.+++||+.|.++|||||||+
T Consensus 159 N~~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~ 238 (677)
T 1t9b_A 159 NVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVD 238 (677)
T ss_dssp TTHHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhccccChhHHH--HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcccc-ccHHHHHHHHHHhC
Q 011590 170 LPTDVLHQTISVSEAE--KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA-RAEGELKKLVESTG 246 (482)
Q Consensus 170 iP~dv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~-~~~~~l~~lae~~g 246 (482)
||.|++.++++++... ..+..............+.++.+++++++|.+||||+|++|.|+.++ .+.++|.+|||++|
T Consensus 239 lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~ 318 (677)
T 1t9b_A 239 LPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQ 318 (677)
T ss_dssp EEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTT
T ss_pred cCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhC
Confidence 9999988765421100 01000000000000112335689999999999999999999999766 46789999999999
Q ss_pred CcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCc---------EEEEe
Q 011590 247 IPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK---------FVLVD 310 (482)
Q Consensus 247 ~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~---------ii~id 310 (482)
+||++|.+|||+||++||+++|. ..++++++||+||.||+++++..+ ++...|.++.+ +||||
T Consensus 319 ~PV~tt~~gkg~~~~~hpl~lG~~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t-~~~~~~~~~~~~~~~~~~~~iI~id 397 (677)
T 1t9b_A 319 IPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVT-GNISKFAPEARRAAAEGRGGIIHFE 397 (677)
T ss_dssp CCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTS-CSGGGSSHHHHHHHHTTSCEEEEEE
T ss_pred CCeeeccccCccCCCCCccccCcCCccCcHHHHHHHhcCCEEEEECCccCcccc-cCccccCcccccccccCCceEEEEE
Confidence 99999999999999999998774 346788999999999999987643 44444555566 99999
Q ss_pred CCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHH
Q 011590 311 VCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR 389 (482)
Q Consensus 311 ~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 389 (482)
+|+.+++... .++.+.+|+..+|++|.+.+... ..+..|.+.+.++++++.... ....+..++++..+++.|+
T Consensus 398 id~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~~~----~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~l~~~~v~~~L~ 471 (677)
T 1t9b_A 398 VSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPV----KERSEWFAQINKWKKEYPYAY--MEETPGSKIKPQTVIKKLS 471 (677)
T ss_dssp SCGGGSSSSSCCSEEEESCHHHHHHHHHTTSCCC----CCCHHHHHHHHHHHHHSCCCC--CCCCTTCCBCHHHHHHHHH
T ss_pred CCHHHhCCcccCCEEEeCCHHHHHHHHHHHhhcc----ccchHHHHHHHHHHHhccccc--ccccCCCCcCHHHHHHHHH
Confidence 9999997655 49999999999999999887541 134568776655544331000 0011234578888999999
Q ss_pred HHHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHH
Q 011590 390 DAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 468 (482)
Q Consensus 390 ~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~e 468 (482)
+.+... +++.|++.+ |.+.+|..+ +++...|++|+.++++|+|||++|+|+|+++|.|+++||+|+|||||+|+.||
T Consensus 472 ~~l~~~-~~~~iv~~~vg~~~~~~~~-~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~e 549 (677)
T 1t9b_A 472 KVANDT-GRHVIVTTGVGQHQMWAAQ-HWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTE 549 (677)
T ss_dssp HHHHTT-CSCEEEEECSSHHHHHHHH-HSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGG
T ss_pred HHhhcC-CCCEEEEeCCchHHHHHHH-hcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHH
Confidence 988322 445666666 445566555 45777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcccccC
Q 011590 469 VEVWLSCIIMISSI 482 (482)
Q Consensus 469 L~T~~r~~l~i~~~ 482 (482)
|+|++|+++|+++|
T Consensus 550 L~ta~~~~l~v~iv 563 (677)
T 1t9b_A 550 LSSAVQAGTPVKIL 563 (677)
T ss_dssp HHHHHHHTCCCEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 99999999998754
No 8
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=4.1e-83 Score=681.60 Aligned_cols=455 Identities=23% Similarity=0.364 Sum_probs=383.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
.+++++++|++.|+++||++|||+||+.+++|++++.+.+|++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 2 AMITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp CEEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred CccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 35799999999999999999999999999999999976569999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
++||++|+.+++|||+|+|+++....+++.+|+ +||..+|++++||+.++++++++++.+++|++.|.++|||||||+|
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~i 161 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDL 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred Ccchhccc-cChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 171 PTDVLHQT-ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 171 P~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
|.|++.++ .+... ..+. .......+.++++.+++++++|.++|||+|++|.++.++++.+++.+|||++|+||
T Consensus 162 P~dv~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv 235 (563)
T 2uz1_A 162 PWDILMNQIDEDSV--IIPD----LVLSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPV 235 (563)
T ss_dssp EHHHHHCEEEGGGS--CCCC----CCCCSSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCE
T ss_pred CHHHhhhhcccccc--cccc----cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcE
Confidence 99966543 22110 0000 00011133456788999999999999999999999998899999999999999999
Q ss_pred eeCCCCCCCCCCC-CCcccchHH------HHhhhcCCEEEEecCccCcccccCCCCCCCC-CCcEEEEeCCchhhcccC-
Q 011590 250 LPTPMGKGLLPDT-HPLAATAAR------SLAIGQCDVALVVGARLNWLLHFGEPPKWSK-DVKFVLVDVCKEEIELRK- 320 (482)
Q Consensus 250 ~~t~~~~g~~~~~-hp~~~G~~~------~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~-~~~ii~id~d~~~~~~~~- 320 (482)
++|+++||.+|++ ||+|+|..+ ++ +++||+||.||+++.+..+. .+..|.+ +.++||||.|+.+++...
T Consensus 236 ~~t~~~~g~~~~~~~p~~~G~~g~~~~~~~~-~~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~ 313 (563)
T 2uz1_A 236 FADYEGLSMLSGLPDAMRGGLVQNLYSFAKA-DAAPDLVLMLGARFGLNTGH-GSGQLIPHSAQVIQVDPDACELGRLQG 313 (563)
T ss_dssp EECGGGGGGGTTSCGGGEEEEGGGGGGTTTT-TCCCSEEEEESCCSSGGGTT-TSCSSSCTTSEEEEECSCGGGTTSSSC
T ss_pred EEcCcccCcCCCCCChhhcCCCCCCCHHHHh-hcCCCEEEEECCCCcccccc-cccccCCCCCeEEEEECCHHHhCCCCC
Confidence 9999999999999 999998543 34 88999999999999986643 3334545 789999999999997654
Q ss_pred CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHH-HHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCC
Q 011590 321 PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWK-KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399 (482)
Q Consensus 321 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 399 (482)
.++.+++|++.+|++|.+.++.... ......|.+.+.+ .++++........ ... ++++..+++.|++.+ |++
T Consensus 314 ~~~~i~~d~~~~l~~L~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~l----~~~ 386 (563)
T 2uz1_A 314 IALGIVADVGGTIEALAQATAQDAA-WPDRGDWCAKVTDLAQERYASIAAKSS-SEH-ALHPFHASQVIAKHV----DAG 386 (563)
T ss_dssp CSEEECSCHHHHHHHHHHHHTTSCC-CCCCHHHHHHHHHHHHHHHHHHHHHCC-CSS-SCCHHHHHHHHHTTC----STT
T ss_pred CCeEEEcCHHHHHHHHHHhhhhccc-ccCcHHHHHHHHHHHHHHhHhhhhccc-cCC-CcCHHHHHHHHHHhC----CCC
Confidence 5999999999999999988754200 0123457765554 4433321110100 122 688888888888777 899
Q ss_pred cEEEeCch-hHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhC--CCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 400 PILVSEGA-NTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIAC--PERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 400 ~i~v~eg~-~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~--p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
++++.|.+ ++.|..+ +|....+++++.++++|+||+++|+|+|+++|. |+++|++++|||+|+|+.|||+|+++++
T Consensus 387 ~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~~ 465 (563)
T 2uz1_A 387 VTVVADGALTYLWLSE-VMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRKQ 465 (563)
T ss_dssp EEEEECSSHHHHHHHH-HHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHHT
T ss_pred cEEEEcCchHHHHHHH-hccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHhC
Confidence 99999954 4566655 467788999999999999999999999999998 8999999999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
+|+++|
T Consensus 466 l~~~iv 471 (563)
T 2uz1_A 466 LPLIVI 471 (563)
T ss_dssp CCCEEE
T ss_pred CCeEEE
Confidence 998754
No 9
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=1.5e-82 Score=680.11 Aligned_cols=451 Identities=22% Similarity=0.306 Sum_probs=382.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~ 81 (589)
T 2pgn_A 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL 81 (589)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence 45799999999999999999999999999999999986 4699999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCC-CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEE
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRG-DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l 168 (482)
|+++||++|+.+++|||+|+|+++....+++ .+|++||.. |++++||++++++++++++.+++||+.|.++|||||||
T Consensus 82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l 160 (589)
T 2pgn_A 82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYV 160 (589)
T ss_dssp GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecCCcccccCCCCcccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEE
Confidence 9999999999999999999999999999999 999999999 99999999999999999999999999999999999999
Q ss_pred EcCcchhccccChhHHHHHHHhhhhhcccccC--CCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhC
Q 011590 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQ--GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246 (482)
Q Consensus 169 ~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g 246 (482)
+||.|++.++++.... .+. ....... ..++ +.+++++++|.+||||+|++|+++.++++.+++.+|||++|
T Consensus 161 ~iP~dv~~~~~~~~~~--~~~----~~~~~~~~~~~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~ 233 (589)
T 2pgn_A 161 DIPFDLTADQIDDKAL--VPR----GATRAKSVLHAPN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVG 233 (589)
T ss_dssp EEETHHHHCEEECTTT--SCC----CCCCCCCCCCCCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHT
T ss_pred EeCHhhhhcccccccc--ccc----ccccCCccCCChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhC
Confidence 9999998765442100 000 0000011 1233 77999999999999999999999988899999999999999
Q ss_pred CcEeeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590 247 IPFLPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR 319 (482)
Q Consensus 247 ~pv~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~ 319 (482)
+||++|+++||.+|++||+++|. ..++++++||+||.||+++.++.+. +..|.+++++||||.|+.+++..
T Consensus 234 ~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~--~~~~~~~~~~i~id~d~~~~~~~ 311 (589)
T 2pgn_A 234 VPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSRLSDWGIA--QGYITKMPKFVHVDTDPAVLGTF 311 (589)
T ss_dssp CCEEECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT--TTTTCCCCSEEEEESCGGGTTSS
T ss_pred CCEEEccccCccCCCCChhhcCCccccCCHHHHHHHhhCCEEEEECCCccccccc--ccccCCCCeEEEEeCCHHHHCCC
Confidence 99999999999999999999984 3467889999999999999876543 34565678999999999999765
Q ss_pred C-CceeEeccHHHHHHHHHHhhhcCCCCC----CCChHHH--HHHHH-HHHHhHHHHHHhhh-cCCCCCCcccHHHHHHH
Q 011590 320 K-PHLGLVGDAKKVLEMINKEIKDEPFCL----GKNHPWV--EAIWK-KTKDNVLKMEVQLA-KDVVPFNFMTPMRIIRD 390 (482)
Q Consensus 320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~----~~~~~w~--~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 390 (482)
. +++.+++|++.+|++|.+.+....... .....|. +.+.+ .++ . ..... .+..++++..+++.|++
T Consensus 312 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~~~l~~ 386 (589)
T 2pgn_A 312 YFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-W----VREQESGDGMPASMFRAMAEVRK 386 (589)
T ss_dssp SCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-H----HHHHTCCCCSSCCHHHHHHHHHH
T ss_pred cCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-H----HhhhccCCCCCcCHHHHHHHHHH
Confidence 5 599999999999999998775310000 1224576 54443 222 1 10111 13456888888888888
Q ss_pred HHhccCCCCcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHH
Q 011590 391 AILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469 (482)
Q Consensus 391 ~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL 469 (482)
.+ +++++++.| |.+..|..++ ++...|++++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||
T Consensus 387 ~l----~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L 461 (589)
T 2pgn_A 387 VQ----RPEDIIVTDIGNHTLPMFGG-AILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEF 461 (589)
T ss_dssp TC----CTTCEEEECSSTTHHHHHHH-CCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGH
T ss_pred hC----CCCCEEEEcCchHHHHHHHh-cccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHH
Confidence 87 999999988 5556676654 57788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccccC
Q 011590 470 EVWLSCIIMISSI 482 (482)
Q Consensus 470 ~T~~r~~l~i~~~ 482 (482)
+|++++++|+++|
T Consensus 462 ~ta~~~~l~~~iv 474 (589)
T 2pgn_A 462 RVAVEHKLPVITM 474 (589)
T ss_dssp HHHHHTTCCCEEE
T ss_pred HHHHHhCCCeEEE
Confidence 9999999998764
No 10
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=2.2e-81 Score=670.71 Aligned_cols=448 Identities=20% Similarity=0.281 Sum_probs=383.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh--CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ--LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~--~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 4789999999999999999999999999999999975 47999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||+.++.+++++++.+++||+.|.++||||||| |
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-i 161 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-V 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcchhccccChhHHH-HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 171 PTDVLHQTISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 171 P~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
|.|++..+++..... .... . ....+. .++.+.+++++++|.++|||+|++|+|+ + ++.+++.+|||++|+||
T Consensus 162 P~dv~~~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~lae~~~~Pv 234 (590)
T 1v5e_A 162 PGDFAKVEIDNDQWYSSANS-L---RKYAPI-APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQELARKIKAPV 234 (590)
T ss_dssp ETTGGGCEEEGGGCCCCGGG-C---CCCCCC-CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHHHHHHTCCE
T ss_pred ccchhhcccCcccccccccc-c---ccCCCC-CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHHHHHHCCCE
Confidence 999987765421100 0000 0 000111 4567889999999999999999999999 7 88999999999999999
Q ss_pred eeCCCCCCCCCCCCCcccch-------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590 250 LPTPMGKGLLPDTHPLAATA-------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P 321 (482)
Q Consensus 250 ~~t~~~~g~~~~~hp~~~G~-------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~ 321 (482)
++|+++||.||++||+++|. ..++++++||+||+||+++++...++.. | ++.++||||.|+.++++.. +
T Consensus 235 ~~t~~g~g~~~~~~p~~~G~~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~~~~~~ 311 (590)
T 1v5e_A 235 ITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLGKRHHA 311 (590)
T ss_dssp EECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTTSSSCC
T ss_pred EEccccCcCCCCCChhhCccCcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHCCCcCC
Confidence 99999999999999999985 3567899999999999999876532321 4 5789999999999997665 5
Q ss_pred ceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhh-cCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 322 HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLA-KDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 322 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
++.+++|++.+|++|.+.+... ....|.+.+.+.++++. ....... ....++++.++++.|++.+ |+++
T Consensus 312 ~~~i~gd~~~~l~~L~~~l~~~-----~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~ 381 (590)
T 1v5e_A 312 DVAILGDAALAIDEILNKVDAV-----EESAWWTANLKNIANWR-EYINMLETKEEGDLQFYQVYNAINNHA----DEDA 381 (590)
T ss_dssp SEEEESCHHHHHHHHHHHSCCC-----CCCHHHHHHHHHHHHHH-HHHHHHHTCCSSBCCHHHHHHHHHHHS----CTTC
T ss_pred CeEEEcCHHHHHHHHHHhhccC-----CcHHHHHHHHHHHHHhH-hhhhhcccCCCCCcCHHHHHHHHHhhC----CCCC
Confidence 9999999999999999887532 22458766655544432 1111100 1345688889999999988 9999
Q ss_pred EEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
+++.| |.+..|..+ +++...|++++.+.++|+||+++|+|+|+++|.|+++|++++|||+|+|+.|||+|++++++|+
T Consensus 382 ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~ 460 (590)
T 1v5e_A 382 IYSIDVGNSTQTSIR-HLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPV 460 (590)
T ss_dssp EEEECSSHHHHGGGG-TCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCC
T ss_pred EEEECCchHHHHHHH-hcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCC
Confidence 99988 555555544 5677889999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 461 ~iv 463 (590)
T 1v5e_A 461 INV 463 (590)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 11
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=2.6e-82 Score=676.45 Aligned_cols=446 Identities=22% Similarity=0.272 Sum_probs=377.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcC-hHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIP-VTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~-~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++++|++.|+++||++|||+||+. +++|++++. . |++|.++||++|+|||+||+|+||||+||++|+|||++|+
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~-~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 88 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNL 88 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST-T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc-C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHH
Confidence 479999999999999999999999999 999999988 4 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCC-CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGR-GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~-~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
++||++|+.+++|||+|+|+++....++ +.+|++||..+|++++||+.++++++++++.+++|++.|.++|||||||+|
T Consensus 89 ~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~i 168 (573)
T 2iht_A 89 STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhccc------cChhHHHHHHHhhhhhcccccC--CCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590 171 PTDVLHQT------ISVSEAEKLLKEAESAKETVTQ--GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (482)
Q Consensus 171 P~dv~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la 242 (482)
|.|++..+ ++... ..+ ...+.. +.++++.+++++++|.+||||+|++|.++.++++.+++.+||
T Consensus 169 P~dv~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~la 240 (573)
T 2iht_A 169 PVDLLGSSEGIDTTVPNPP--ANT------PAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALA 240 (573)
T ss_dssp EHHHHTCCTTCC---CCCC--CCC------CSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHH
T ss_pred cchHhhhhhcccccCCccc--ccc------CCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHH
Confidence 99998765 22110 000 000111 135567899999999999999999999998889999999999
Q ss_pred HHhCCcEeeCCCCCCCCCCCCCcccchH------------HHHhhhcCCEEEEecCc-cCcccccCCCCCCCCCCcEEEE
Q 011590 243 ESTGIPFLPTPMGKGLLPDTHPLAATAA------------RSLAIGQCDVALVVGAR-LNWLLHFGEPPKWSKDVKFVLV 309 (482)
Q Consensus 243 e~~g~pv~~t~~~~g~~~~~hp~~~G~~------------~~~~l~~aDlvl~iG~~-~~~~~~~g~~~~~~~~~~ii~i 309 (482)
|++|+||++|+++||.+|++||+++|.. .++++++||+||.||++ +.++.+..+. . .+++++|||
T Consensus 241 e~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~-~~~~~~i~i 318 (573)
T 2iht_A 241 ERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-K-GIEKKTVRI 318 (573)
T ss_dssp HHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-C-SSCCEEEEE
T ss_pred HHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-C-CCCCeEEEE
Confidence 9999999999999999999999998853 34678999999999999 8655443222 1 156899999
Q ss_pred eCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHH
Q 011590 310 DVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRII 388 (482)
Q Consensus 310 d~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 388 (482)
|.|+.+++... +++.+++|++.+|++|.+.+.... ...| +.+.+.++++..... ....+..++++..+++.|
T Consensus 319 d~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~w-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 391 (573)
T 2iht_A 319 SPTVNPIPRVYRPDVDVVTDVLAFVEHFETATASFG-----AKQR-HDIEPLRARIAEFLA-DPETYEDGMRVHQVIDSM 391 (573)
T ss_dssp ESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTTTCC-----CCCC-CCCHHHHHHHHHHHT-CCCCCSSSBCHHHHHHHH
T ss_pred eCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhccccC-----chhH-HHHHHHHHHhhhhhh-ccccCcCCcCHHHHHHHH
Confidence 99999997664 599999999999999998775421 1234 322222222211110 111123468889999999
Q ss_pred HHHHhccCCC-----CcEEEeC-chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590 389 RDAILGVGSP-----APILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462 (482)
Q Consensus 389 ~~~l~~~~~~-----~~i~v~e-g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf 462 (482)
++.+ |+ +++++.| |.+..|..+ +++...|++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|
T Consensus 392 ~~~l----~~~~~~~~~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~ 466 (573)
T 2iht_A 392 NTVM----EEAAEPGEGTIVSDIGFFRHYGVL-FARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGF 466 (573)
T ss_dssp HHHH----HHHSCTTCCEEEECSSHHHHHHHH-HCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHH
T ss_pred HHhc----ccccCCCCcEEEEcCcHhHHHHHH-hcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHH
Confidence 9998 77 8999888 556666655 45777889999998999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCcccccC
Q 011590 463 GFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 463 ~~~~~eL~T~~r~~l~i~~~ 482 (482)
+|+.|||+|++++++|+++|
T Consensus 467 ~~~~~~L~~a~~~~l~~~iv 486 (573)
T 2iht_A 467 HSNSSDLETIARLNLPIVTV 486 (573)
T ss_dssp HHTGGGHHHHHHHTCCCEEE
T ss_pred HhHHHHHHHHHHhCCCeEEE
Confidence 99999999999999998754
No 12
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=8.6e-81 Score=659.13 Aligned_cols=441 Identities=19% Similarity=0.241 Sum_probs=377.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
++++++|++.|+++||++|||+||+.+++|++++. .+|++|.++||++|+|||+||+|+||||+||++|+|||++|+++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~-~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~ 80 (528)
T 1q6z_A 2 ASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP-EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMG 80 (528)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC-TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh-hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHH
Confidence 58999999999999999999999999999999994 67999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCCCCCCC-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGRGDFQE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPT 172 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~ 172 (482)
||++|+.+++|||+|+|++++...+.+.+|+ +||..+|++++||+.++++++++++.+++|++.|.++|+|||||+||.
T Consensus 81 ~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (528)
T 1q6z_A 81 ALSNAWNSHSPLIVTAGQQTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPY 160 (528)
T ss_dssp HHHHHHHTTCCEEEEEEECCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEG
T ss_pred HHHHHhhcCCCEEEEeCCCcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 9999999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred chhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcE-ee
Q 011590 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF-LP 251 (482)
Q Consensus 173 dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv-~~ 251 (482)
|++..+.+... ..... ........++++.+++++++|.++|||+|++|.++.++++.+++.+|||++|+|| ++
T Consensus 161 d~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~ 234 (528)
T 1q6z_A 161 DDWDKDADPQS-HHLFD-----RHVSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA 234 (528)
T ss_dssp GGTTSBCCGGG-GGGTT-----CCCCCCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEEC
T ss_pred hhhhCcccccc-ccccc-----cCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 99877654321 00100 0011223467788999999999999999999999988899999999999999999 77
Q ss_pred CCCCCCCCCCCCCcccch------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeE
Q 011590 252 TPMGKGLLPDTHPLAATA------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGL 325 (482)
Q Consensus 252 t~~~~g~~~~~hp~~~G~------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i 325 (482)
+.++||.+|++||+|+|. ..++++++||+||.||+++.++.+.++...+++++++||||.|+.++++...++.+
T Consensus 235 ~~~g~g~~~~~~p~~~G~~g~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i 314 (528)
T 1q6z_A 235 PSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAI 314 (528)
T ss_dssp SSCSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEEE
T ss_pred ccCccccCCCCCccccCcCCCCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCCCCCeeE
Confidence 889999999999999985 34578899999999999998877655544456688999999999999766559999
Q ss_pred eccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCcEEEeC
Q 011590 326 VGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405 (482)
Q Consensus 326 ~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~v~e 405 (482)
++|++.+|++|.+.++..... . ..|.+ +.. .......++++.++++.|++.+ |++++++.|
T Consensus 315 ~~d~~~~l~~L~~~~~~~~~~--~-~~~~~-------~~~-----~~~~~~~~~~~~~~~~~l~~~l----~~~~iv~~d 375 (528)
T 1q6z_A 315 VADIGAMASALANLVEESSRQ--L-PTAAP-------EPA-----KVDQDAGRLHPETVFDTLNDMA----PENAIYLNE 375 (528)
T ss_dssp ESCHHHHHHHHHHHSCCCCSC--C-CCCCC-------CCC-----CCCCCSSSBCHHHHHHHHHHHS----CTTCEEEEE
T ss_pred eCCHHHHHHHHHHHhhccccc--h-HHHHh-------hhh-----cccccCCCcCHHHHHHHHHhhC----CCCeEEEEC
Confidence 999999999999877532100 0 01110 000 0011234678888999998888 999999888
Q ss_pred -chhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCcccccC
Q 011590 406 -GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 406 -g~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i~~~ 482 (482)
|.+..|..+ +++...+++++.+.+ |+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++++|+++|
T Consensus 376 ~g~~~~~~~~-~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~iv 451 (528)
T 1q6z_A 376 STSTTAQMWQ-RLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFV 451 (528)
T ss_dssp CTTSHHHHHH-HCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEE
T ss_pred CcccHHHHHH-hccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEE
Confidence 455656544 567777889999888 999999999999999999999999999999999999999999999998864
No 13
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=6.5e-81 Score=671.13 Aligned_cols=454 Identities=27% Similarity=0.348 Sum_probs=381.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHh-CCcEEEEEcCChhhHh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVSGPGCVH 90 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N 90 (482)
+++++|+|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+| ||++||++|+|||++|
T Consensus 26 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N 105 (616)
T 2pan_A 26 KMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTD 105 (616)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHT
T ss_pred cCcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH
Confidence 4689999999999999999999999999999999975 6799999999999999999999998 8999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
+++||++|+.+++|||+|+|+++....+++.+|++||..+|++++||++++.+++++++.+++|++.|.++|||||||+|
T Consensus 106 ~~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 185 (616)
T 2pan_A 106 MITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDL 185 (616)
T ss_dssp SHHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEe
Q 011590 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 171 P~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
|.|++..+.+........ .+...+.+.++.+++++++|.++|||+|++|.|+.++++.+++.+|||++|+||+
T Consensus 186 P~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~ 258 (616)
T 2pan_A 186 PFDVQVAEIEFDPDMYEP-------LPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVI 258 (616)
T ss_dssp EHHHHHSEEECCGGGCCC-------CCCCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEE
T ss_pred chhhhhcccccccccccc-------cccCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEE
Confidence 999987654321100000 0111123347789999999999999999999999888999999999999999999
Q ss_pred eCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccC-C
Q 011590 251 PTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK-P 321 (482)
Q Consensus 251 ~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~-~ 321 (482)
+|+++||.+|++||+++|. ..++++++||+||+||+++++..+ +++..|.++.++||||.|+.++++.. +
T Consensus 259 ~t~~~~g~~~~~hp~~~G~~g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~-~~~~~~~~~~~~i~id~d~~~~~~~~~~ 337 (616)
T 2pan_A 259 PTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHT-GSVEKYTEGRKIVHIDIEPTQIGRVLCP 337 (616)
T ss_dssp ECTTTTTSSCTTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCCCCHHHH-SSHHHHHTTCEEEEEESCGGGTTSSSCC
T ss_pred EccccCccCCCCCccccCCccccCCHHHHHHHHHhCCEEEEECCCCccccc-CcccccCCCCeEEEEeCCHHHhCCCCCC
Confidence 9999999999999999884 456788999999999999986433 33333446789999999999997655 4
Q ss_pred ceeEeccHHHHHHHHHHhhhcCCC-CCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCCCc
Q 011590 322 HLGLVGDAKKVLEMINKEIKDEPF-CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400 (482)
Q Consensus 322 ~~~i~~D~~~~l~~L~~~l~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 400 (482)
++.+++|++.+|++|.+.++.... .......|++.+.+.+++... ........++++..+++.|++.+ |+++
T Consensus 338 ~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~l----~~~~ 410 (616)
T 2pan_A 338 DLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLL---RKTHFDNVPVKPQRVYEEMNKAF----GRDV 410 (616)
T ss_dssp SSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSE---ECCCCCCSSBCHHHHHHHHHHHS----CTTE
T ss_pred CeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhh---hccccCCCCcCHHHHHHHHHHhC----CCCc
Confidence 999999999999999887653100 001224565554333222110 00011234688888999999888 8999
Q ss_pred EEEeCc-hhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcCccc
Q 011590 401 ILVSEG-ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMI 479 (482)
Q Consensus 401 i~v~eg-~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~l~i 479 (482)
|++.|. .+..|..+ +++...|++|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++++|+
T Consensus 411 ivv~d~G~~~~~~~~-~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~ 489 (616)
T 2pan_A 411 CYVTTIGLSQIAAAQ-MLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPY 489 (616)
T ss_dssp EEEECSSHHHHHHHH-HCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCC
T ss_pred EEEEcCcHHHHHHHH-hcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCe
Confidence 999984 45555544 4577788999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 011590 480 SSI 482 (482)
Q Consensus 480 ~~~ 482 (482)
++|
T Consensus 490 ~iv 492 (616)
T 2pan_A 490 IHV 492 (616)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 14
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-81 Score=667.23 Aligned_cols=461 Identities=15% Similarity=0.109 Sum_probs=368.3
Q ss_pred ccccCCccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590 5 ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV 83 (482)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t 83 (482)
||+++.+..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|
T Consensus 2 ~~~~~~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~T 81 (578)
T 3lq1_A 2 SLTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCT 81 (578)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEEC
Confidence 688888888899999999999999999999999999999999986 5899999999999999999999999999999999
Q ss_pred CChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHH-------HHHHHHH
Q 011590 84 SGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPK-------CVAQVLE 156 (482)
Q Consensus 84 ~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~-------~l~~A~~ 156 (482)
+|||++|+++||++|+.+++|||+|+|+++....+++.+|++||..+|+++|||++++++++++++ .+++||+
T Consensus 82 sGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~ 161 (578)
T 3lq1_A 82 SGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD 161 (578)
T ss_dssp SSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 8999999
Q ss_pred HhhcCCCceEEEEcCcchhccc-cChhHHH-HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcccccc
Q 011590 157 RAVSGRPGGCYLDLPTDVLHQT-ISVSEAE-KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234 (482)
Q Consensus 157 ~a~~~~~gPv~l~iP~dv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~ 234 (482)
.|.++|||||||+||.|++..+ ++..... ..+...+ ...+...+.++++.+++++++|.+ |||+|++|+|+.+ ++
T Consensus 162 ~A~~gr~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~~ 238 (578)
T 3lq1_A 162 IAMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHH-VHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-EL 238 (578)
T ss_dssp HHHSSSCCCEEEEEECCSCCCCCCSSCCC-------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-TC
T ss_pred HhhCCCCCcEEEECccCCCCCCCcccchhcccCccccc-cccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-HH
Confidence 9999999999999999976543 2211110 0000000 000111234567889999999999 9999999999975 56
Q ss_pred HHHHHHHHHHhCCcEeeCCC-CCCCCCCCCCcccchHH-------HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcE
Q 011590 235 EGELKKLVESTGIPFLPTPM-GKGLLPDTHPLAATAAR-------SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF 306 (482)
Q Consensus 235 ~~~l~~lae~~g~pv~~t~~-~~g~~~~~hp~~~G~~~-------~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~i 306 (482)
.+++.+|||++|+||++|++ +++.+|++||+++|.+. ...+++||+||.+|+++..+....+... .++.++
T Consensus 239 ~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~-~~~~~~ 317 (578)
T 3lq1_A 239 EQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQ-LSDIRF 317 (578)
T ss_dssp HHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHH-CCSSEE
T ss_pred HHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhc-CCCCEE
Confidence 79999999999999999965 68999999999998643 2347799999999998754332222111 256899
Q ss_pred EEEeCCchhhcccC-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHH-HHHHhhhcCCCCCCcccH
Q 011590 307 VLVDVCKEEIELRK-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL-KMEVQLAKDVVPFNFMTP 384 (482)
Q Consensus 307 i~id~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 384 (482)
||||.|+.+++... +++.+++|++.+|++|.+.+... .....|.+.+.+.++++.. .+.. ..+..++++.++
T Consensus 318 i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~----~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 391 (578)
T 3lq1_A 318 YVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDD----AKDAAWLNGWTSYNKVAREIVLAE--MANTTILEEGKI 391 (578)
T ss_dssp EEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSCST----TCCHHHHHHHHHHHHHHHHHHHHH--SCC----CTTHH
T ss_pred EEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhccCC----CCcHHHHHHHHHHHHHHhHHHHHh--hhcCCCCCHHHH
Confidence 99999998886554 59999999999999999877542 1145687766555444332 2211 123457889999
Q ss_pred HHHHHHHHhccCCCCcEEEeCchh-HHHHHHHhhh-cCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhc
Q 011590 385 MRIIRDAILGVGSPAPILVSEGAN-TMDVGRAVLV-QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462 (482)
Q Consensus 385 ~~~l~~~l~~~~~~~~i~v~eg~~-~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf 462 (482)
++.|++.+ |++++++.+.+. ..++.+ ++. ...+.+++.+.+++++|+++|+|+|+++ ++++||+|+|||||
T Consensus 392 ~~~l~~~l----~~~~iv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf 464 (578)
T 3lq1_A 392 VAELRRLL----PDKAGLFIGNSMPIRDVDT-YFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSF 464 (578)
T ss_dssp HHHHHHHS----CSEEEEEECSSHHHHHHHH-HCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHH
T ss_pred HHHHHHhC----CCCCeEEEeCccHHHHHHH-hhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHH
Confidence 99999998 999988877443 344434 343 3445577777666677779999999974 58999999999999
Q ss_pred cCChHHHHHHHHcCcccccC
Q 011590 463 GFSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 463 ~~~~~eL~T~~r~~l~i~~~ 482 (482)
+|++|||+|++|+++|+++|
T Consensus 465 ~~~~~eL~ta~~~~l~~~iv 484 (578)
T 3lq1_A 465 YHDMNGLLMAKKYKMNLTIV 484 (578)
T ss_dssp HHTGGGGHHHHHTTCCEEEE
T ss_pred HhhHHHHHhhccCCCCeEEE
Confidence 99999999999999998764
No 15
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-80 Score=667.32 Aligned_cols=454 Identities=14% Similarity=0.082 Sum_probs=371.1
Q ss_pred CccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 10 ~~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
....++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+||||+||++|+|||+
T Consensus 27 ~~~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~ 106 (604)
T 2x7j_A 27 VNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAA 106 (604)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHH
T ss_pred chhhHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHH
Confidence 3466789999999999999999999999999999999976 479999999999999999999999999999999999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc-------HHHHHHHHHHHhhcC
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE-------VPKCVAQVLERAVSG 161 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~-------~~~~l~~A~~~a~~~ 161 (482)
+|+++||++|+.+++|||+|||++++...+++.+|++||..+|+++|||++++.++++ +++.+++||+.|.++
T Consensus 107 ~N~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~ 186 (604)
T 2x7j_A 107 ANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKR 186 (604)
T ss_dssp HTTHHHHHHHHHHTCCEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CCceEEEEcCcchhccccChhH-HH--HHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHH
Q 011590 162 RPGGCYLDLPTDVLHQTISVSE-AE--KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238 (482)
Q Consensus 162 ~~gPv~l~iP~dv~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l 238 (482)
|||||||+||.|++..+..... .. .... . .......+.++++.+++++++|.+||||+|++|+++ ++++.+++
T Consensus 187 ~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~~l 262 (604)
T 2x7j_A 187 PMGPVHVNVPLREPLMPDLSDEPFGRMRTGR-H--VSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKENI 262 (604)
T ss_dssp SCCEEEEEEECCSCCCCCTTSCTTCCSSSSC-S--SEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHHHH
T ss_pred CCCcEEEEcccCccCCCcccccccccccccc-c--ccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHHHH
Confidence 9999999999998654432111 00 0000 0 000111123455779999999999999999999998 56778999
Q ss_pred HHHHHHhCCcEeeCCCCCCCC-CCCCCcccchHH--------HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEE
Q 011590 239 KKLVESTGIPFLPTPMGKGLL-PDTHPLAATAAR--------SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309 (482)
Q Consensus 239 ~~lae~~g~pv~~t~~~~g~~-~~~hp~~~G~~~--------~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~i 309 (482)
.+|||++|+||++|+++++.+ |++||+++|... ++.++ +|+||.||+++.+.....+... .++.++|||
T Consensus 263 ~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~-~~~~~~i~i 340 (604)
T 2x7j_A 263 IALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKD-DPTIQQIVI 340 (604)
T ss_dssp HHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHH-CTTSEEEEE
T ss_pred HHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhh-CCCCeEEEE
Confidence 999999999999999987655 888999988532 23455 8999999999876533222111 125799999
Q ss_pred eCCchhhcccC-CceeEeccHHHHHHHHHHhhh-cCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHH
Q 011590 310 DVCKEEIELRK-PHLGLVGDAKKVLEMINKEIK-DEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRI 387 (482)
Q Consensus 310 d~d~~~~~~~~-~~~~i~~D~~~~l~~L~~~l~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (482)
|.|+.+++... +++.+++|++.+|++|.+.+. .. ....|.+.+.+.++++..... ...+..++++.++++.
T Consensus 341 d~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~-----~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 413 (604)
T 2x7j_A 341 DEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT-----RSSEWLEKWQFVNGRFREHLQ--TISSEDVSFEGNLYRI 413 (604)
T ss_dssp CTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSCSSC-----CCCHHHHHHHHHHHHHHHHHH--TSCCCCTTSHHHHHHH
T ss_pred CCCCCccCCCccceEEEEcCHHHHHHHHHHhhcCCC-----CcHHHHHHHHHHHHHHHHHHH--hhcccCCCCHHHHHHH
Confidence 99999987654 599999999999999998774 21 234576654443333221111 1112356888899999
Q ss_pred HHHHHhccCCCCcEEEeC-chhHHHHHHHhhhcCC-CCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCC
Q 011590 388 IRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTE-PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465 (482)
Q Consensus 388 l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~~~~~~-~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~ 465 (482)
|++.+ |++++++.| |....++.+ +++... +++++.+.++++||+++|+|+|+++| ++++||+++|||||+|+
T Consensus 414 L~~~l----p~d~iv~~d~g~~~~~~~~-~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~ 487 (604)
T 2x7j_A 414 LQHLV----PENSSLFVGNSMPIRDVDT-FFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHD 487 (604)
T ss_dssp HHHHS----CTTCEEEECTTHHHHHHHH-HCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHT
T ss_pred HHHhC----CCCCEEEEECCHHHHHHHH-hcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhH
Confidence 99888 999999888 444555544 455544 78999998899999999999999999 68999999999999999
Q ss_pred hHHHHHHHHcCcccccC
Q 011590 466 AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 466 ~~eL~T~~r~~l~i~~~ 482 (482)
.|||+|++|+++|+++|
T Consensus 488 ~~eL~ta~~~~lp~~iv 504 (604)
T 2x7j_A 488 LNGLLAAKKLGIPLTVI 504 (604)
T ss_dssp GGGGHHHHHHCCCEEEE
T ss_pred HHHHHHhhhcCCCeEEE
Confidence 99999999999998764
No 16
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=1.5e-77 Score=639.37 Aligned_cols=444 Identities=16% Similarity=0.217 Sum_probs=363.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKG-AAAAVVTYSVGALSA 80 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhC-CeEEEEeCCCCHHHH
Confidence 3789999999999999999999999999999999986 47999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCC--------CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDF--------QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~--------q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
++||++|+.+++|||+|+|+++....+.+.+ |..||..+|+++|||++++.+++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~- 159 (568)
T 2wvg_A 81 FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREK- 159 (568)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999988776532 2248999999999999999999999999999999999987
Q ss_pred ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (482)
Q Consensus 164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae 243 (482)
|||||+||.|++..+++......... ......+.++++.+++++++|.+||||+|++|.++.++++.+++.+|||
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae 234 (568)
T 2wvg_A 160 KPVYLEIACNIASMPCAAPGPASALF-----NDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFAD 234 (568)
T ss_dssp CCEEEEEEGGGTTSEECEECCTHHHH-----CCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHH
T ss_pred CCEEEEechhHhcCcccCCCcccccc-----cCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHH
Confidence 99999999999877654211111110 0001111123467999999999999999999999999999999999999
Q ss_pred HhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh
Q 011590 244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE 315 (482)
Q Consensus 244 ~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~ 315 (482)
++|+||++|+++||.||++||+++|. ..++++++||+||+||+++.++.+.++. .+.++.++||||.|+.+
T Consensus 235 ~~~~Pv~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~ 313 (568)
T 2wvg_A 235 ALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWT-DIPDPKKLVLAEPRSVV 313 (568)
T ss_dssp HHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTT-CCCCTTTEEEECSSEEE
T ss_pred HhCCCEEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccc-cCCCCCcEEEEeCChhh
Confidence 99999999999999999999999885 2456889999999999999877654443 33467899999999988
Q ss_pred hcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHH-HhHHHHHHhhhcCCCCCCcccHHHHHHHHHhc
Q 011590 316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTK-DNVLKMEVQLAKDVVPFNFMTPMRIIRDAILG 394 (482)
Q Consensus 316 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 394 (482)
++.. .....+++.+|++|.+.++.. ...|.+ ..+.++ ++. .........++++..+++.|++.+
T Consensus 314 ~~~~---~~~~~~~~~~l~~L~~~l~~~------~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l-- 378 (568)
T 2wvg_A 314 VNGI---RFPSVHLKDYLTRLAQKVSKK------TGALDF-FKSLNAGELK---KAAPADPSAPLVNAEIARQVEALL-- 378 (568)
T ss_dssp ETTE---EEESCCHHHHHHHHHHHCCCC------CHHHHH-HHHTTCCSCC---CCCCCCTTSBCCHHHHHHHHHTTC--
T ss_pred cCCe---ecCCCCHHHHHHHHHHhcccc------ccchhh-hhhhhhhccc---ccccCCCCCccCHHHHHHHHHHhC--
Confidence 7642 233446899999998876431 234632 111110 000 000011234578888888887777
Q ss_pred cCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHH
Q 011590 395 VGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS 474 (482)
Q Consensus 395 ~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r 474 (482)
|++++++.|.++..+.. .++....+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++|
T Consensus 379 --~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~ 455 (568)
T 2wvg_A 379 --TPNTTVIAETGDSWFNA-QRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVR 455 (568)
T ss_dssp --CTTEEEEECSSHHHHHH-HTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred --CCCCEEEEcCcHHHHHH-hhcccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHH
Confidence 99999999955555543 445666788999998999999999999999999999999999999999999999999999
Q ss_pred cCcccccC
Q 011590 475 CIIMISSI 482 (482)
Q Consensus 475 ~~l~i~~~ 482 (482)
+++|+++|
T Consensus 456 ~~l~~~iv 463 (568)
T 2wvg_A 456 LKLPVIIF 463 (568)
T ss_dssp TTCCCEEE
T ss_pred cCCCcEEE
Confidence 99998654
No 17
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=4.2e-78 Score=641.44 Aligned_cols=445 Identities=13% Similarity=0.109 Sum_probs=343.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
..++++|+|++.|+++||+||||+||+.+++|++++.+ .++++|.++||++|+|||+||+|+||||+||++|+|||++|
T Consensus 6 ~~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N 85 (556)
T 3hww_A 6 FNRRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVAN 85 (556)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHT
T ss_pred hhhHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHh
Confidence 45789999999999999999999999999999999975 57999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCc------HHHHHHHHHHHhhcCCCc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITE------VPKCVAQVLERAVSGRPG 164 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~------~~~~l~~A~~~a~~~~~g 164 (482)
+++||++||.+++|||+|||++++...+++.+|++||..+|+++|||++++.++++ +.+.+++|+ .++|||
T Consensus 86 ~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~---~~~r~G 162 (556)
T 3hww_A 86 LYPALIEAGLTGEKLILLTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHAL---GTLHAG 162 (556)
T ss_dssp THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHH---HSCCSS
T ss_pred hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHH---hcCCCC
Confidence 99999999999999999999999999999999999999999999999999999875 777777777 358899
Q ss_pred eEEEEcCcchhcc-ccChhHHHHHHHhhhh-hcccccCCCCCHHHH-HHHHHHHHhCCCCEEEEcCCccccccHHHHHHH
Q 011590 165 GCYLDLPTDVLHQ-TISVSEAEKLLKEAES-AKETVTQGGIVNSDI-DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL 241 (482)
Q Consensus 165 Pv~l~iP~dv~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~l 241 (482)
||||+||.|+... +++........+.... ....+....+..+.+ ++++++|.+||||+|++|.+ ++++.+++.+|
T Consensus 163 PV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~a~~~l~~l 240 (556)
T 3hww_A 163 GVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRM--SAEEGKKVALW 240 (556)
T ss_dssp CEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSCCCCCCCCCCCTTHHHHTTSCEEEEECBC--CHHHHHHHHHH
T ss_pred CEEEeCCcCCCCCCCccccccccccccccccccccccccccccccchhhhhhhhccCCCeEEEECCC--ChHHHHHHHHH
Confidence 9999999985433 3332110000000000 000011111111222 34567788999999999974 46788999999
Q ss_pred HHHhCCcEeeCCC-CCCCCCCCCCcccch-HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhccc
Q 011590 242 VESTGIPFLPTPM-GKGLLPDTHPLAATA-ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR 319 (482)
Q Consensus 242 ae~~g~pv~~t~~-~~g~~~~~hp~~~G~-~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~ 319 (482)
||++|+||++|++ ++|.++++||+++|. ..++++++||+||+||+++++..+.++...+++ .++||||.|+.+++..
T Consensus 241 ae~~~~PV~~t~~~~~~~~~~~~~~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~~~ 319 (556)
T 3hww_A 241 AQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEP-EEYWIVDDIEGRLDPA 319 (556)
T ss_dssp HHHHTCCEEECTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCC-SEEEEEESSCSCCCTT
T ss_pred HHhcCCEEEEccCCCCCCCcCcHHHHhcCchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCC-CeEEEECCCCccCCCC
Confidence 9999999999975 889999999999984 567889999999999999976544443333443 4999999999999765
Q ss_pred C-CceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhccCCC
Q 011590 320 K-PHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398 (482)
Q Consensus 320 ~-~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 398 (482)
. +++.+++|++.+|++|.+.. ...|.+.+.+.++++.... .....++++.++++.|++.+ |+
T Consensus 320 ~~~~~~i~~d~~~~l~~l~~~~---------~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~l----~~ 382 (556)
T 3hww_A 320 HHRGRRLIANIADWLELHPAEK---------RQPWCVEIPRLAEQAMQAV----IARRDAFGEAQLAHRICDYL----PE 382 (556)
T ss_dssp CCSEEEEESCHHHHHHHSCCCC---------CCCCCSSHHHHHHHHHHHH----HTTCCSSSHHHHHHTGGGTC----CT
T ss_pred CCceEEEEcCHHHHHHhccccc---------chHHHHHHHHHHHHHHHHH----hhcccCcCHHHHHHHHHHhC----CC
Confidence 4 59999999999999864321 1124333333333322211 12345788888888888777 99
Q ss_pred CcEEEeCchhHH-HHHHHhhhcCCCCeeecC-CCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHcC
Q 011590 399 APILVSEGANTM-DVGRAVLVQTEPRCRLDA-GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCI 476 (482)
Q Consensus 399 ~~i~v~eg~~~~-~~~~~~~~~~~~~~~~~~-~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~~ 476 (482)
+++++.+.+... ++ ..+........++.+ +++|.||+ +|+|+|+++| |+++||+++|||||+|++|||+|++|++
T Consensus 383 ~~iv~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~~~ 459 (556)
T 3hww_A 383 QGQLFVGNSLVVRLI-DALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQVS 459 (556)
T ss_dssp TCEEEECSSHHHHHH-HHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTTCS
T ss_pred CCeEEEeCCcHHHHH-HHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcccC
Confidence 998886522211 11 111111222345554 45677788 9999999999 7999999999999999999999999999
Q ss_pred cccccC
Q 011590 477 IMISSI 482 (482)
Q Consensus 477 l~i~~~ 482 (482)
+|+++|
T Consensus 460 lpv~iv 465 (556)
T 3hww_A 460 APLVLI 465 (556)
T ss_dssp SCEEEE
T ss_pred CCcEEE
Confidence 998764
No 18
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=3.9e-77 Score=635.94 Aligned_cols=441 Identities=18% Similarity=0.233 Sum_probs=362.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG 91 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~ 91 (482)
+++++++|++.|+++||++|||+||+.+++|++++.+. +|++|.++||++|+|||+||+|+|| |+||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~ 80 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISA 80 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHH
Confidence 37999999999999999999999999999999999864 7999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCcccCCCCCC--C-----C-cCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQKDFGRGDF--Q-----E-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~--q-----~-~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
++||++|+.+++|||+|+|+++....+.+.+ | + .||..+|++++||+.++++++++++.+++|++.|.++|
T Consensus 81 ~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~- 159 (566)
T 2vbi_A 81 MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRER- 159 (566)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999988876542 2 3 38999999999999999999999999999999999987
Q ss_pred ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (482)
Q Consensus 164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae 243 (482)
|||||+||.|++..+++......... ......+.++++.+++++++|.+||||+|++|.++.++++.+++.+|||
T Consensus 160 GPV~l~iP~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae 234 (566)
T 2vbi_A 160 KPAYLDIACNIASEPCVRPGPVSSLL-----SEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLAD 234 (566)
T ss_dssp CCEEEEEETTTTTSBCCEECCCSCSC-----CCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHH
T ss_pred CCEEEEechhhcCCeecCCCCCcccC-----CCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHH
Confidence 99999999999877654211000000 0000011123467999999999999999999999999999999999999
Q ss_pred HhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh
Q 011590 244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE 315 (482)
Q Consensus 244 ~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~ 315 (482)
++|+||++|+++||.+|++||+++|. ..++++++||+||+||+++.++.+.++. .+.+++++||||.|+.+
T Consensus 235 ~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~~ 313 (566)
T 2vbi_A 235 KLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWS-AWPKGPNVILAEPDRVT 313 (566)
T ss_dssp HHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTT-SCCCSTTEEEECSSEEE
T ss_pred HhCCCEEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCcccccccccc-ccCCCCcEEEEeCChhe
Confidence 99999999999999999999999885 2456789999999999999887655443 33467899999999988
Q ss_pred hcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhcc
Q 011590 316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGV 395 (482)
Q Consensus 316 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 395 (482)
++.. .....+++.+|++|.+.+... ...|.+ ..+.+++. . ......++++..+++.|++.+
T Consensus 314 ~~~~---~~~~~~~~~~l~~L~~~l~~~------~~~~~~-~~~~~~~~----~--~~~~~~~l~~~~~~~~l~~~l--- 374 (566)
T 2vbi_A 314 VDGR---AYDGFTLRAFLQALAEKAPAR------PASAQK-SSVPTCSL----T--ATSDEAGLTNDEIVRHINALL--- 374 (566)
T ss_dssp ETTE---EEESSCHHHHHHHHHHHCCCC------CHHHHT-SCCCCCCC----C--CCCTTSCCCHHHHHHHHHHHC---
T ss_pred eCCc---ccCCccHHHHHHHHHHhcccc------ccchhh-hhhhhhcc----C--CCCCCCccCHHHHHHHHHHhc---
Confidence 7642 223345789999998876432 233421 10000000 0 001234688888999998888
Q ss_pred CCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHHc
Q 011590 396 GSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSC 475 (482)
Q Consensus 396 ~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r~ 475 (482)
|++++++.|.++..+.. .+++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++++
T Consensus 375 -~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~ 452 (566)
T 2vbi_A 375 -TSNTTLVAETGDSWFNA-MRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRY 452 (566)
T ss_dssp -CTTEEEEECSSHHHHHH-HTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHT
T ss_pred -CCCCEEEECCchHHHhh-hheECCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHh
Confidence 99999999855544543 3456666788999889999999999999999999999999999999999999999999999
Q ss_pred CcccccC
Q 011590 476 IIMISSI 482 (482)
Q Consensus 476 ~l~i~~~ 482 (482)
++|+++|
T Consensus 453 ~l~~~iv 459 (566)
T 2vbi_A 453 ELPVIIF 459 (566)
T ss_dssp TCCCEEE
T ss_pred CCCcEEE
Confidence 9998754
No 19
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=8.1e-78 Score=641.11 Aligned_cols=443 Identities=19% Similarity=0.237 Sum_probs=358.6
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
.+++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N 80 (563)
T 2vk8_A 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELS 80 (563)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHH
Confidence 35799999999999999999999999999999999986 47999999999999999999999999 99999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccC----------CCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDF----------GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
+++||++|+.+++|||+|+|++++... +.+.+| ||..+|++++||+.++++++++++.+++|++.|.+
T Consensus 81 ~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~ 158 (563)
T 2vk8_A 81 ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYV 158 (563)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSS--HHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchH--HHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998753 456677 68999999999999999999999999999999998
Q ss_pred CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590 161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (482)
Q Consensus 161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~ 240 (482)
+| |||||+||.|++..+++......... ...+...+.++++.+++++++|.+||||+|++|+++.++++.+++.+
T Consensus 159 ~~-GPV~l~iP~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 233 (563)
T 2vk8_A 159 TQ-RPVYLGLPANLVDLNVPAKLLQTPID----MSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKK 233 (563)
T ss_dssp HT-SCEEEEEETTGGGSEEEGGGGGSCCC----CSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CC-CCEEEEechhhhcCccCCccCcCccc----ccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHH
Confidence 76 99999999999876654321000000 00000011122357899999999999999999999988899999999
Q ss_pred HHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
|||++|+||++|+++||.||++||+++|. ..++++++||+||+||+++++..+.++. .+.++.++||||.|
T Consensus 234 lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d 312 (563)
T 2vk8_A 234 LIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFS-YSYKTKNIVEFHSD 312 (563)
T ss_dssp HHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTC-CCCCCSCEEEECSS
T ss_pred HHHHhCCCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccc-cCCCCCeEEEEeCC
Confidence 99999999999999999999999999874 2467899999999999999887655443 33457899999999
Q ss_pred chhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 011590 313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAI 392 (482)
Q Consensus 313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 392 (482)
+.+++... ....+++.+|++|.+.+.... ..|.+ +.+.++++. ........++++.++++.|++.+
T Consensus 313 ~~~~~~~~---~~~~~~~~~l~~L~~~l~~~~------~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l 378 (563)
T 2vk8_A 313 HMKIRNAT---FPGVQMKFVLQKLLTTIADAA------KGYKP-VAVPARTPA----NAAVPASTPLKQEWMWNQLGNFL 378 (563)
T ss_dssp EEEETTEE---EETCCHHHHHHHHHHHHHHHT------TTCCC-CCCCCCCCC----CCCCCTTCBCCHHHHHHHHTTTC
T ss_pred ceEECCcc---cCCcCHHHHHHHHHHhhcccc------chhhh-hhhhhhccc----ccCCCCCCCcCHHHHHHHHHHhC
Confidence 98876542 223356899999988764321 01210 000000000 00011234578877888887776
Q ss_pred hccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCC----CcEEEEEcchhccCChHH
Q 011590 393 LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE----RLVVAVEGDSGFGFSAVE 468 (482)
Q Consensus 393 ~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~----~~vi~~~GDGsf~~~~~e 468 (482)
|++++++.|.+++.+.. .+++...+++++.++++|+||+++|+|+|+++|.|+ ++||+++|||+|+|+.||
T Consensus 379 ----~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~e 453 (563)
T 2vk8_A 379 ----QEGDVVIAETGTSAFGI-NQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQE 453 (563)
T ss_dssp ----CTTCEEEECTTHHHHHG-GGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGG
T ss_pred ----CCCCEEEECCchHHHHH-hhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHH
Confidence 99999999955555543 345666788999999999999999999999999887 999999999999999999
Q ss_pred HHHHHHcCcccccC
Q 011590 469 VEVWLSCIIMISSI 482 (482)
Q Consensus 469 L~T~~r~~l~i~~~ 482 (482)
|+|++++++|+++|
T Consensus 454 l~ta~~~~l~~~iv 467 (563)
T 2vk8_A 454 ISTMIRWGLKPYLF 467 (563)
T ss_dssp HHHHHHTTCCCEEE
T ss_pred HHHHHHcCCCcEEE
Confidence 99999999998764
No 20
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=1.8e-77 Score=637.80 Aligned_cols=437 Identities=17% Similarity=0.209 Sum_probs=354.5
Q ss_pred ccCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhC-CCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhH
Q 011590 11 NAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCV 89 (482)
Q Consensus 11 ~~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~-~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~ 89 (482)
+.+++++++|++.|+++||++|||+||+.+++|++++.+. .+++|.++||++|+|||+||+|+||||+||++|+|||++
T Consensus 18 ~~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~ 97 (565)
T 2nxw_A 18 GSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAF 97 (565)
T ss_dssp SCCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHH
T ss_pred CCCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHH
Confidence 3468999999999999999999999999999999999754 468899999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCC-----CCcC-HhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF-----QELD-QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----q~~d-~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
|+++||++|+.+++|||+|+|+++....+.+.+ |++| |..+|++++||++++++++++++.+++||+.|.++ +
T Consensus 98 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~ 176 (565)
T 2nxw_A 98 NMVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ-S 176 (565)
T ss_dssp TTHHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-C
Confidence 999999999999999999999999998887764 6788 99999999999999999999999999999999986 5
Q ss_pred ceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH
Q 011590 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243 (482)
Q Consensus 164 gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae 243 (482)
|||||+||.|++.++++.... .+ .....+.+.++.+++++++|.++|||+|++|.++.++++.+++.+|||
T Consensus 177 GPV~l~iP~Dv~~~~~~~~~~--~~-------~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 247 (565)
T 2nxw_A 177 RPVYLEIPRNMVNAEVEPVGD--DP-------AWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQ 247 (565)
T ss_dssp CCEEEEEEGGGTTCBCCCCCC--CC-------CCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHH
T ss_pred CCEEEECChhhhcCcCCCccc--cC-------CCCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHH
Confidence 999999999999876542110 00 000111122457899999999999999999999988899999999999
Q ss_pred HhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh
Q 011590 244 STGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE 315 (482)
Q Consensus 244 ~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~ 315 (482)
++|+||++|+++||.+|++||+++|. ..++++++||+||+||+++.+..+..+...+ +..++|+||.|+.+
T Consensus 248 ~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~i~i~~d~~~ 326 (565)
T 2nxw_A 248 RLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKI-DLRKTIHAFDRAVT 326 (565)
T ss_dssp HHCSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTS-CGGGEEEEETTEEE
T ss_pred HhCCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccC-CCCcEEEEeCCcee
Confidence 99999999999999999999999885 2457889999999999999876543333223 34689999999988
Q ss_pred hcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhcc
Q 011590 316 IELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGV 395 (482)
Q Consensus 316 ~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 395 (482)
++... .....+..++++|.+.+... ...|.+. .+ ++.. .....+..++++..+++.|++.+
T Consensus 327 ~~~~~---~~~~~~~~~l~~L~~~l~~~------~~~w~~~-~~--~~~~----~~~~~~~~~l~~~~v~~~l~~~l--- 387 (565)
T 2nxw_A 327 LGYHT---YADIPLAGLVDALLERLPPS------DRTTRGK-EP--HAYP----TGLQADGEPIAPMDIARAVNDRV--- 387 (565)
T ss_dssp ETTEE---EESCCHHHHHHHHHHTSCCC------CCCCCCS-CS--SCCC----CCCCCSSSBCCHHHHHHHHHHHH---
T ss_pred eCCcc---cCCccHHHHHHHHHHhcccc------chhhhhh-hh--hhcc----ccccCCCCccCHHHHHHHHHHhc---
Confidence 76432 22234467888888766432 1123211 00 0000 00011234688899999999999
Q ss_pred CCC--CcEE-EeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590 396 GSP--APIL-VSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472 (482)
Q Consensus 396 ~~~--~~i~-v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~ 472 (482)
|+ ++++ +.|.+++.|+... + .+++++.++++|+||+++|+|+|+|+|.|+++|++++|||+|+|+.+||+|+
T Consensus 388 -~~~~~~iv~~~d~G~~~~~~~~-~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta 462 (565)
T 2nxw_A 388 -RAGQEPLLIAADMGDCLFTAMD-M---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNC 462 (565)
T ss_dssp -HTTCCCCEEEECSSHHHHHHTT-S---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGH
T ss_pred -ccccCCEEEEecchHHHHHHHh-C---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHH
Confidence 88 8887 8885555555433 2 6788999988999999999999999999999999999999999999999999
Q ss_pred HHcCcccccC
Q 011590 473 LSCIIMISSI 482 (482)
Q Consensus 473 ~r~~l~i~~~ 482 (482)
+|+++|+++|
T Consensus 463 ~~~~l~~~iv 472 (565)
T 2nxw_A 463 RRLGIDPIVI 472 (565)
T ss_dssp HHHTCCCEEE
T ss_pred HHhCCCCEEE
Confidence 9999998754
No 21
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=2.9e-76 Score=627.96 Aligned_cols=437 Identities=19% Similarity=0.211 Sum_probs=358.0
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 3 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N 81 (552)
T 1ovm_A 3 TPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELS 81 (552)
T ss_dssp CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHH
Confidence 45899999999999999999999999999999999986 47999999999999999999999999 99999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccC----------CCCCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDF----------GRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
+++||++|+.+++|||+|+|+++.... +.+.+| ||..++++++||++++.+ +++++.+++|++.|.+
T Consensus 82 ~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q--~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~ 158 (552)
T 1ovm_A 82 AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFR--HFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLR 158 (552)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCS--HHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHH--HHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHh
Confidence 999999999999999999999987653 445677 589999999999999999 9999999999999998
Q ss_pred CCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH
Q 011590 161 GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK 240 (482)
Q Consensus 161 ~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~ 240 (482)
+| |||||+||.|++.++++.... .... ..+...+.++++.+++++++|.++|||+|++|+|+.++++.+++.+
T Consensus 159 ~~-GPV~l~iP~d~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~ 231 (552)
T 1ovm_A 159 ER-RPGYLMLPADVAKKAATPPVN-ALTH-----KQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQK 231 (552)
T ss_dssp HT-CCEEEEEEHHHHHSBCCCCSS-CCCC-----CCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHH
T ss_pred CC-CCEEEEeehhhccCccCCCcc-cccc-----cCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHH
Confidence 76 999999999998766542210 0000 0000011123457999999999999999999999998999999999
Q ss_pred HHHHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCC
Q 011590 241 LVESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVC 312 (482)
Q Consensus 241 lae~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d 312 (482)
|||++|+||++|++|||.+|++||+++|. ..++++++||+||+||+++++..+.++. .+.++.++||||.|
T Consensus 232 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d 310 (552)
T 1ovm_A 232 WVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFT-HQLTPAQTIEVQPH 310 (552)
T ss_dssp HHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTC-CCCCTTTEEEECSS
T ss_pred HHHHHCCCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccc-cCCCCCeEEEEeCC
Confidence 99999999999999999999999999985 2457889999999999999887655443 34457899999999
Q ss_pred chhhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHH
Q 011590 313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAI 392 (482)
Q Consensus 313 ~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 392 (482)
+.+++.... ...+++.+|++|.+ +.... ..|.+.. +++... .......++++..+++.|++.+
T Consensus 311 ~~~~~~~~~---~~~~~~~~l~~L~~-l~~~~------~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~l~~~l 373 (552)
T 1ovm_A 311 AARVGDVWF---TGIPMNQAIETLVE-LCKQH------VHAGLMS---SSSGAI----PFPQPDGSLTQENFWRTLQTFI 373 (552)
T ss_dssp EEEETTEEE---ESCCHHHHHHHHHH-HHHTS------CCC---------------------CCSBCCHHHHHHHHHHHC
T ss_pred hheeCCccc---CCccHHHHHHHHHh-Ccccc------cchhhhh---hhcccc----ccCCCCCccCHHHHHHHHHHhc
Confidence 988764321 23456899999988 65421 1243211 111110 0111335688899999999888
Q ss_pred hccCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHH
Q 011590 393 LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVW 472 (482)
Q Consensus 393 ~~~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~ 472 (482)
+++++++.|.++..+..+ +++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|+
T Consensus 374 ----~~~~ivv~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta 448 (552)
T 1ovm_A 374 ----RPGDIILADQGTSAFGAI-DLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSM 448 (552)
T ss_dssp ----CTTCEEEECTTHHHHHHT-TCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHH
T ss_pred ----CCCCEEEECCchHHHHHH-hcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHH
Confidence 999999998555445434 456667888999999999999999999999999999999999999999999999999
Q ss_pred HHcCcccccC
Q 011590 473 LSCIIMISSI 482 (482)
Q Consensus 473 ~r~~l~i~~~ 482 (482)
+++++|+++|
T Consensus 449 ~~~~l~~~iv 458 (552)
T 1ovm_A 449 LRDKQHPIIL 458 (552)
T ss_dssp HHTTCCCEEE
T ss_pred HHhCCCCEEE
Confidence 9999998764
No 22
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=2.9e-74 Score=614.39 Aligned_cols=436 Identities=17% Similarity=0.208 Sum_probs=356.3
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
..++++++|++.|+++||++|||+||+.+++|++++.+ .+|++|.++||++|+|||+||+|+|| |+||++|+|||++|
T Consensus 23 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N 101 (570)
T 2vbf_A 23 SMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKK-AAAFLTTFGVGELS 101 (570)
T ss_dssp -CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHH
T ss_pred CcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHH
Confidence 35799999999999999999999999999999999986 47999999999999999999999999 99999999999999
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCCcccCCCCC--CC-----Cc-CHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCC
Q 011590 91 GLAGLSNGMINTWPIVMISGSCDQKDFGRGD--FQ-----EL-DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR 162 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q-----~~-d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~ 162 (482)
+++||++|+.+++|||+|+|+++....+++. +| ++ ||..++++++||++++.+ +++++.+++|++.|.++|
T Consensus 102 ~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~~ 180 (570)
T 2vbf_A 102 AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKER 180 (570)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999987654432 22 23 488999999999999999 999999999999999886
Q ss_pred CceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHH
Q 011590 163 PGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242 (482)
Q Consensus 163 ~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~la 242 (482)
|||||+||.|++..+++.... .... ..+...+.+ ++.+++++++|.++|||+|++|+|+.++++.+++.+||
T Consensus 181 -GPV~l~iP~d~~~~~~~~~~~-~~~~-----~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~la 252 (570)
T 2vbf_A 181 -KPVYINLPVDVAAAKAEKPAL-SLEK-----ESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFV 252 (570)
T ss_dssp -CCEEEEEEHHHHTSBCCCCSS-CCC-----------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHH
T ss_pred -CCEEEEcchhhhcCcccCCcc-cccc-----cCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHH
Confidence 999999999998776543210 0000 000011112 56799999999999999999999999899999999999
Q ss_pred HHhCCcEeeCCCCCCCCCCCCCcccch--------HHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCch
Q 011590 243 ESTGIPFLPTPMGKGLLPDTHPLAATA--------ARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314 (482)
Q Consensus 243 e~~g~pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~ 314 (482)
|++|+||++|+++||.+|++||+++|. ..++++++||+||+||+++.+..+..+. .+.++.++||||.|+.
T Consensus 253 e~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~i~id~d~~ 331 (570)
T 2vbf_A 253 SETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFT-HHLDENKMISLNIDEG 331 (570)
T ss_dssp HHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTC-CCCCGGGEEEECSSCE
T ss_pred HHHCCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccc-cCCCCCeEEEEeCCHH
Confidence 999999999999999999999999874 2457889999999999999877654433 2345689999999998
Q ss_pred hhcccCCceeEeccHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHhHHHHHHhhhcCCCCCCcccHHHHHHHHHhc
Q 011590 315 EIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILG 394 (482)
Q Consensus 315 ~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 394 (482)
+++... ....|++.+|++|.+.+... . |. .... ++.. .......++++..+++.|++.+
T Consensus 332 ~~~~~~---~~~~~~~~~l~~L~~~l~~~-----~---~~--~~~~-~~~~-----~~~~~~~~~~~~~~~~~l~~~l-- 390 (570)
T 2vbf_A 332 IIFNKV---VEDFDFRAVVSSLSELKGIE-----Y---EG--QYID-KQYE-----EFIPSSAPLSQDRLWQAVESLT-- 390 (570)
T ss_dssp EETTEE---ECSSCHHHHHHTGGGCCSCC-----C---CS--CCCC-CCCC-----CCCCCSSBCCHHHHHHHHHHHC--
T ss_pred HhCCee---ecCCCHHHHHHHHHHhcccc-----c---cc--cchh-hhcc-----ccCCCCCCcCHHHHHHHHHHhc--
Confidence 776432 23347899999888766431 1 21 0000 0000 0011234678888999998888
Q ss_pred cCCCCcEEEeCchhHHHHHHHhhhcCCCCeeecCCCCCcccchHHHHHHHhhhCCCCcEEEEEcchhccCChHHHHHHHH
Q 011590 395 VGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEVWLS 474 (482)
Q Consensus 395 ~~~~~~i~v~eg~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~p~~~vi~~~GDGsf~~~~~eL~T~~r 474 (482)
|++++++.|.+++.+.. .+++...+++++.++++|+||+++|+|+|+++|.|+++||+++|||+|+|+.|||+|++|
T Consensus 391 --~~~~iv~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~ 467 (570)
T 2vbf_A 391 --QSNETIVAEQGTSFFGA-STIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIR 467 (570)
T ss_dssp --CSSEEEEECTTHHHHHH-TTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHH
T ss_pred --CCCCEEEEeCCHHHHHH-HhcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHH
Confidence 99999999955544443 345666788999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccC
Q 011590 475 CIIMISSI 482 (482)
Q Consensus 475 ~~l~i~~~ 482 (482)
+++|+++|
T Consensus 468 ~~l~~~iv 475 (570)
T 2vbf_A 468 EKLNPICF 475 (570)
T ss_dssp TTCCCEEE
T ss_pred cCCCCEEE
Confidence 99998764
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.73 E-value=6.2e-19 Score=157.38 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCC--cc--cchHH-------H--
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP--LA--ATAAR-------S-- 272 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp--~~--~G~~~-------~-- 272 (482)
..+++++++|++||||+|++|+|+.++++.+++.+|||++|+||++|.++||+||++|| +| +|..+ +
T Consensus 22 ~~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~ 101 (170)
T 3cf4_G 22 VSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPG 101 (170)
T ss_dssp CCHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhH
Confidence 45899999999999999999999998999999999999999999999999999999999 99 88643 3
Q ss_pred -HhhhcCCEEEEecCcc--CcccccCCCCCCCCCCcEEEEeCCchh-hcccCCceeEeccHHHHHHHHHHhh
Q 011590 273 -LAIGQCDVALVVGARL--NWLLHFGEPPKWSKDVKFVLVDVCKEE-IELRKPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 273 -~~l~~aDlvl~iG~~~--~~~~~~g~~~~~~~~~~ii~id~d~~~-~~~~~~~~~i~~D~~~~l~~L~~~l 340 (482)
+.+++||+||++|+++ +++.+.++ ..|.+ .++|+++.+... .....+.+ ..+.+|+.|.+.+
T Consensus 102 ~~~~~~aDlvl~iG~~~~~~~~~t~~~-~~~~~-~~iI~i~~~~~~~~~~~~~~l----~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 102 LDGNGNYDMIITIGFKKFYINQVLSAA-KNFSN-LKTIAIERGYIQNATMSFGNL----SKADHYAALDELI 167 (170)
T ss_dssp SSSSCCCSEEEEESCCHHHHHHHHHHH-HHHCC-CCEEECSSSCCTTSSEECCCC----CHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEECCccCccccccccc-cccCC-CeEEEECCCcccchhhhhccC----CHHHHHHHHHHHH
Confidence 6688999999999999 76654322 22344 788866553211 11111222 3567777776654
No 24
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.66 E-value=2.7e-18 Score=152.31 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=84.0
Q ss_pred HHHH-HHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC-CC-C--cccc--hHHHHhh-----
Q 011590 208 IDKA-VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD-TH-P--LAAT--AARSLAI----- 275 (482)
Q Consensus 208 ~~~~-~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~-~h-p--~~~G--~~~~~~l----- 275 (482)
++++ +++|++||||+|++|+ +..+++.++|++|+|+ |+||++|.+|+|.||+ +| | +++| ..++...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~ 101 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWK 101 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHhhhhhhh
Confidence 6788 9999999999999999 9888999999999999 9999999999999999 99 8 5666 4455544
Q ss_pred -----hcCCEEEEecCccCcccc-cCCCCCCCCCCcEEEEe
Q 011590 276 -----GQCDVALVVGARLNWLLH-FGEPPKWSKDVKFVLVD 310 (482)
Q Consensus 276 -----~~aDlvl~iG~~~~~~~~-~g~~~~~~~~~~ii~id 310 (482)
++|||||+||+|+++... .+.+..|.+++++||||
T Consensus 102 ~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 102 GFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp CTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 899999999999973221 22333455688999986
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.63 E-value=3.8e-16 Score=157.81 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=125.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh----CCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ----LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC 88 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~----~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~ 88 (482)
.++|.+++++.+.+.|++++||+||++..++++.+.+ .+++++.+.||.+|+.||.|+++.++| ++..|+|||+
T Consensus 22 ~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r--~~~~ts~~G~ 99 (395)
T 1yd7_A 22 FIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK--AMTATSGPGF 99 (395)
T ss_dssp EEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC--EEEEEETTHH
T ss_pred EeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc--EEEEeCchHH
Confidence 5799999999999999999999999999988888753 579999999999999999999999998 5557999999
Q ss_pred HhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCc-CHhhh--hc--cccceeeecCCcCcHHHHHHHHHHHhhcCCC
Q 011590 89 VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL-DQVEA--VK--PFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163 (482)
Q Consensus 89 ~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~-d~~~~--~~--~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~ 163 (482)
.+++.+|.++...++|+++++++++....+...+++. |...+ .. ++.++...+.+++++.+++..||+.|...+
T Consensus 100 ~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~~~- 178 (395)
T 1yd7_A 100 SLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYR- 178 (395)
T ss_dssp HHHTTTCC----CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999999999999999987666554444444 22222 22 567889999999999999999999999876
Q ss_pred ceEEEEcCcchhcc
Q 011590 164 GGCYLDLPTDVLHQ 177 (482)
Q Consensus 164 gPv~l~iP~dv~~~ 177 (482)
.||.+.+|.++-..
T Consensus 179 ~PVi~~~~~~l~h~ 192 (395)
T 1yd7_A 179 TPVILLTDAEVGHM 192 (395)
T ss_dssp SEEEEEECHHHHHC
T ss_pred CCEEEEcchhHhCe
Confidence 99999999997443
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.94 E-value=6.2e-10 Score=126.33 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=110.5
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHH---h---CC-----CcEEecCchHHHHHHHHHHHhHhCCcEEE
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV---Q---LG-----VRFIAFHNEQSAGYAASAYGYLTGKPGIL 80 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~---~---~~-----i~~v~~~~E~~A~~~A~g~ar~tgk~~v~ 80 (482)
..++|.++++... ..|++.+++.|+++..++.+.+. . .+ ..++...+|.+|..||.|.+.+..|+.
T Consensus 5 ~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~-- 81 (1231)
T 2c42_A 5 MTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT-- 81 (1231)
T ss_dssp EEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE--
T ss_pred EEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh--
Confidence 4578999999986 88999999999999899888774 1 12 388899999999999999998866643
Q ss_pred EEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhh
Q 011590 81 LTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAV 159 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~ 159 (482)
..|++||+.-+...|..+...++|+|+...+++....+...+.+.++. ++.-.+.|.. ...++.++.+++..|++.|.
T Consensus 82 t~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~~hsd~-~~ar~~G~~vl~pss~QEa~dl~~~Af~lAe 160 (1231)
T 2c42_A 82 TFTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHALSIFGDHQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAI 160 (1231)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSCCSHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCCchhhH-HHHhcCCcEEEECCCHHHHHHHHHHHHHHHH
Confidence 448999999999999876667899999999886543322212221122 2222233333 34567777778888888777
Q ss_pred cCCCceEEEEc
Q 011590 160 SGRPGGCYLDL 170 (482)
Q Consensus 160 ~~~~gPv~l~i 170 (482)
..+ -||.+..
T Consensus 161 k~~-~PVi~~~ 170 (1231)
T 2c42_A 161 ESN-VPFMHFF 170 (1231)
T ss_dssp HHC-CCEEEEE
T ss_pred HcC-CCEEEEe
Confidence 544 4555443
No 27
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=98.60 E-value=4.4e-08 Score=104.72 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=49.9
Q ss_pred CCCCCcccchHHHHHHHhhh----CCCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590 428 AGTWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 428 ~~~~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~ 482 (482)
..+.|+||+++|+|+|+|+| .++++|++++|||+|+ |+.++|.|+.++++|+++|
T Consensus 119 ~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~I 179 (629)
T 2o1x_A 119 AITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKMLIV 179 (629)
T ss_dssp CSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE
T ss_pred CcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE
Confidence 34679999999999999999 4899999999999999 7789999999999998754
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.44 E-value=8.6e-08 Score=96.44 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=49.0
Q ss_pred CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccCCh--HHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFSA--VEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~~~--~eL~T~~r~~l~i~~~ 482 (482)
..|+||+++|.|+|+++|.+ ++.|++++|||+|+|.. ++|.++.++++|++.|
T Consensus 160 ~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v 218 (400)
T 2bfd_A 160 ISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFF 218 (400)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred cCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEE
Confidence 45999999999999999976 89999999999999988 9999999999998754
No 29
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.34 E-value=2e-07 Score=92.66 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=47.4
Q ss_pred CCCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590 429 GTWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 429 ~~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~ 482 (482)
++.|+||+++|.|+|+|+|.+ ++.||+++|||+|++. ..+|.|+.++++|++.|
T Consensus 139 ~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v 198 (368)
T 1w85_A 139 PPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFV 198 (368)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEE
Confidence 357999999999999999964 8999999999999985 34799999999998754
No 30
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=98.32 E-value=2.3e-07 Score=99.06 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=48.2
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhcc--CChHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~~ 482 (482)
..|+||+++|+|+|+|+|. ++++|++++|||+|+ |+.++|.|+.++++|+++|
T Consensus 119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~v 177 (621)
T 2o1s_A 119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVI 177 (621)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEE
Confidence 4799999999999999995 789999999999999 6778999999999998764
No 31
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.27 E-value=3.6e-07 Score=91.90 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=47.0
Q ss_pred CCCcccchHHHHHHHhhhC----CCCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIAC----PERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~----p~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~ 482 (482)
+.|+||+++|.|+|+++|. +++.||++.|||+|++. .++|+++.++++|++.|
T Consensus 179 ~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~V 237 (407)
T 1qs0_A 179 ISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILN 237 (407)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEE
Confidence 4699999999999999995 58999999999999986 47899999999996643
No 32
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.27 E-value=4.7e-07 Score=90.25 Aligned_cols=53 Identities=13% Similarity=-0.029 Sum_probs=42.9
Q ss_pred CCCcccchHHHHHHHhhh----CCCCcEEEEEcchhccCC-hHH-HHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIA----CPERLVVAVEGDSGFGFS-AVE-VEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala----~p~~~vi~~~GDGsf~~~-~~e-L~T~~r~~l~i~~~ 482 (482)
..|++|.++|.|+|+++| .++++||+++|||+|+++ .+| |.++.++++|++.|
T Consensus 142 ~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~v 200 (367)
T 1umd_A 142 VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFI 200 (367)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEE
Confidence 346666666666665554 688999999999999999 899 99999999997654
No 33
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=98.27 E-value=3e-07 Score=97.70 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=47.4
Q ss_pred CCCcccchHHHHHHHhhhCC-----CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP-----ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p-----~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++++|||+|+ |+.++|.++.++++|.++
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~li 177 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLV 177 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEE
T ss_pred cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEE
Confidence 46999999999999999976 78999999999999 888999999999998654
No 34
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=98.24 E-value=4.9e-07 Score=89.70 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCCcccchHHHHHHHhhhCC----CCcEEEEEcchhccCC--hHHHHHHHHcCcccccC
Q 011590 430 TWGTMGVGLGYCIAAAIACP----ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMISSI 482 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p----~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~~~ 482 (482)
+.|+||+++|.|+|+++|.+ ++.||++.|||++++. ..+|.++.++++|++.|
T Consensus 138 ~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~v 196 (365)
T 2ozl_A 138 GNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFI 196 (365)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEE
T ss_pred CcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEE
Confidence 45899999999999999975 8999999999999985 45799999999998754
No 35
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=98.17 E-value=5e-07 Score=95.95 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCCcccchHHHHHHHhhhCC-----------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP-----------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p-----------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++++|||+|+ |+.++|.++.++++|.++
T Consensus 112 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~li 176 (632)
T 3l84_A 112 ATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFI 176 (632)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred CCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEE
Confidence 35999999999999999987 89999999999999 888999999999998543
No 36
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.17 E-value=5.2e-07 Score=96.87 Aligned_cols=52 Identities=17% Similarity=0.147 Sum_probs=47.1
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++|+|||+|+ |+.++|.++.++++|.++
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~li 220 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLI 220 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEE
Confidence 46999999999999999976 78999999999999 688899999999999443
No 37
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=98.16 E-value=5.5e-07 Score=96.24 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=47.1
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.++.+++||.++
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~li 181 (663)
T 3kom_A 114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLV 181 (663)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEE
T ss_pred CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEE
Confidence 46999999999999999976 79999999999999 678899999999998543
No 38
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=98.10 E-value=8.9e-07 Score=95.14 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=47.1
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.++.+++||.++
T Consensus 112 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li 179 (669)
T 2r8o_A 112 TTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLI 179 (669)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEE
Confidence 57999999999999999975 78999999999999 778899999999999543
No 39
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=98.09 E-value=9.6e-07 Score=94.60 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCCcccchHHHHHHHhhhC--------------CCCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~--------------p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|. ++++|++++|||+++ |+.++|.++.+++||.++
T Consensus 116 ~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li 183 (651)
T 2e6k_A 116 TTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLI 183 (651)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred ccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEE
Confidence 5799999999999999995 378999999999999 788999999999999543
No 40
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=98.07 E-value=1.1e-06 Score=94.28 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=46.9
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|+|+|+|+|.+ +++|++++|||+++ |+.++|.++.++++|.++
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~li 205 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLV 205 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEE
Confidence 45999999999999999976 89999999999999 678999999999998543
No 41
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.07 E-value=2.6e-05 Score=88.71 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHhccCCCCcEEEeC-chhHHHHHHHh---hhcCCCC---eeecCC--CCCcccchHHH------------
Q 011590 382 MTPMRIIRDAILGVGSPAPILVSE-GANTMDVGRAV---LVQTEPR---CRLDAG--TWGTMGVGLGY------------ 440 (482)
Q Consensus 382 ~~~~~~l~~~l~~~~~~~~i~v~e-g~~~~~~~~~~---~~~~~~~---~~~~~~--~~g~mG~~l~~------------ 440 (482)
..+++.|.+++ +++.+++++ |.+++|.++++ +..+.++ .|..+. +.++||||+|+
T Consensus 817 ~~~ik~l~ql~----g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~ 892 (1231)
T 2c42_A 817 TPYVRVITQLF----GERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADL 892 (1231)
T ss_dssp HHHHHHHHHHH----GGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777 888889888 77788877763 2333444 676663 55999999999
Q ss_pred ---------------HH--------------------HHhhhCCC----------------CcEEEEEcch-hccCChHH
Q 011590 441 ---------------CI--------------------AAAIACPE----------------RLVVAVEGDS-GFGFSAVE 468 (482)
Q Consensus 441 ---------------Ai--------------------Gaala~p~----------------~~vi~~~GDG-sf~~~~~e 468 (482)
|| |++|+.|+ ++||+|.||| +|+|++||
T Consensus 893 ~~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~e 972 (1231)
T 2c42_A 893 AAKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGG 972 (1231)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHH
T ss_pred HHHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHH
Confidence 99 99998544 7899999999 99999999
Q ss_pred HHHHHHcCcccccC
Q 011590 469 VEVWLSCIIMISSI 482 (482)
Q Consensus 469 L~T~~r~~l~i~~~ 482 (482)
|.|++++|+||++|
T Consensus 973 L~ta~~~~~~v~ii 986 (1231)
T 2c42_A 973 LDHVLASGEDVNVF 986 (1231)
T ss_dssp HHHHHHTTCSCEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 99999999999865
No 42
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.07 E-value=1.4e-06 Score=93.67 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCCcccchHHHHHHHhhhC--------------CCCcEEEEEcchhcc--CChHHHHHHHHcCcccc
Q 011590 430 TWGTMGVGLGYCIAAAIAC--------------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIMIS 480 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~--------------p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~ 480 (482)
..|+||+++|+|+|+|+|. ++++|++++|||+++ |+.++|.++.+++|+.+
T Consensus 125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~l 191 (675)
T 1itz_A 125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKL 191 (675)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTE
T ss_pred CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcE
Confidence 4699999999999999996 689999999999999 88999999999999643
No 43
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.02 E-value=1.5e-06 Score=93.47 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhcc--CChHHHHHHHHcCccccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFG--FSAVEVEVWLSCIIMISS 481 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~i~~ 481 (482)
..|+||+++|.|+|+|+|.+ +++|++++|||+++ |+.++|.++.+++||.++
T Consensus 114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li 181 (680)
T 1gpu_A 114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLI 181 (680)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEE
Confidence 46999999999999999965 78999999999999 888999999999999443
No 44
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=97.83 E-value=5.1e-06 Score=89.22 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=45.4
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhccCC--hHHHHHHHHcCcccc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGFGFS--AVEVEVWLSCIIMIS 480 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~i~ 480 (482)
..|+||+++|.|+|+|+|.+ +++|++++|||++++. ..++.++.+++||.+
T Consensus 114 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~l 180 (673)
T 1r9j_A 114 TTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKL 180 (673)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTE
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcE
Confidence 46999999999999999964 7899999999999964 678999999999844
No 45
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=97.11 E-value=0.00049 Score=66.70 Aligned_cols=113 Identities=15% Similarity=0.246 Sum_probs=82.4
Q ss_pred EEEE-cCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590 222 LIVF-GKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP 298 (482)
Q Consensus 222 vil~-G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~ 298 (482)
+|+. |.|....+..+.+.+||+.||+-|-+|... .|.+|. .+.+|..+ ..+.-|+|-|++|.+=--+...|
T Consensus 204 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTG-k~V~P~~lYiA~GISGAiQHlaG--- 277 (320)
T 1o97_D 204 FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPK--SRQVGQSG-KVVGSCKLYVAMGISGSIQHMAG--- 277 (320)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTS-BCCTTCSEEEEESCCCCHHHHHH---
T ss_pred EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCh--hhEeecCc-eEecccceEEEEeccCcHHHHhh---
Confidence 4444 555554567899999999999999887542 465655 44566543 34455799999998765443333
Q ss_pred CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
......||-||.||+..=+...|..+++|+.+++++|.+.++
T Consensus 278 -m~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 278 -MKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp -HTTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred -cccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 234567999999998776666799999999999999999874
No 46
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=97.00 E-value=0.0014 Score=63.40 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=82.7
Q ss_pred CEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590 221 PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP 298 (482)
Q Consensus 221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~ 298 (482)
.|+-.|.|....+..+.+.+||+.||+-|-+|... .|.+|. .+.+|..+. .=..+|-|++|.+=--+...|
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~--~~QVGqTGk--~V~P~lYiA~GISGAiQHlaG--- 271 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPN--DMQVGQTGK--IVAPELYIAVGISGAIQHLAG--- 271 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCG--GGBBSTTSB--CCCCSEEEEESCCCCHHHHTT---
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCH--HheeccCCc--ccCcceEEEecccCcHHHHhh---
Confidence 44444555554567889999999999999887542 466655 445664331 114799999998765544444
Q ss_pred CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
......||-||.||+..=+...|..+++|+.+++++|.+.+++
T Consensus 272 -m~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~~ 314 (315)
T 1efv_A 272 -MKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 314 (315)
T ss_dssp -TTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC-
T ss_pred -cccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHhc
Confidence 3445679999999987766667999999999999999999853
No 47
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=97.00 E-value=0.0021 Score=60.96 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=52.8
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh-hc--ccCCceeEeccHHHHHHHHHHhhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE-IE--LRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~-~~--~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
...+++||++|+||+++..+...+.+.....+.+++.||.++.. +. ....|+.+.+|+...+++|.+.+.
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lg 264 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLG 264 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhC
Confidence 45678999999999999765433333334566788999998753 22 234589999999999999999875
No 48
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=96.77 E-value=0.00044 Score=74.05 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCCcccchHHHHHHHhhhCC-----------------CCcEEEEEcchhccCC--hHHHHHHHHcCcc-cc
Q 011590 430 TWGTMGVGLGYCIAAAIACP-----------------ERLVVAVEGDSGFGFS--AVEVEVWLSCIIM-IS 480 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p-----------------~~~vi~~~GDGsf~~~--~~eL~T~~r~~l~-i~ 480 (482)
..|++|.++|.|+|.|+|.+ ++.|++++|||+++.. ..++.++.+++|| ++
T Consensus 131 ~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli 201 (700)
T 3rim_A 131 TTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLI 201 (700)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEE
T ss_pred cccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEE
Confidence 35899999999999999843 6899999999999964 4579999999997 44
No 49
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=96.64 E-value=0.0034 Score=60.44 Aligned_cols=112 Identities=15% Similarity=0.199 Sum_probs=80.6
Q ss_pred CEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC--CCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCC
Q 011590 221 PLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPP 298 (482)
Q Consensus 221 pvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~--~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~ 298 (482)
.++-.|.|....+..+.+.+||+++|+-|-+|... .|.+|.+ +.+|..+. .=..+|-|++|.+=--+...|
T Consensus 194 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~--~QVGqTGk--~V~P~lYiA~GISGAiQHlaG--- 266 (307)
T 1efp_A 194 RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPND--WQVGQTGK--VVAPELYVAVGISGAIQHLAG--- 266 (307)
T ss_dssp EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGG--GBBSSSSB--CCCCSEEEEESCCCCHHHHTT---
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChh--hEeccCCc--ccCCceEEEEeccCcHHHHhh---
Confidence 34444555554567889999999999999887542 3666553 45664331 114799999998765544444
Q ss_pred CCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590 299 KWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 299 ~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (482)
......||-||.||+..=+...|..+++|+.+++++|.+.+
T Consensus 267 -m~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 267 -MKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp -TTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred -hccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 34456799999999877666679999999999999998864
No 50
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=96.49 E-value=0.045 Score=53.50 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=82.5
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhh---------CCCcEEEEeCCCCcccCCCC-
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMI---------NTWPIVMISGSCDQKDFGRG- 120 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~---------~~~Pvl~i~g~~~~~~~~~~- 120 (482)
-+++.+ -.|++++.+|.|++.. |...++..|.+..+.-+.-.|.++-. .++||+++... .. .-+.+
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~-~g~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA-SAGVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC-CSSCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC-CCCCCc
Confidence 588887 5999999999999987 55444445778888778888876433 89999998764 22 11122
Q ss_pred CC-CCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 121 DF-QELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 121 ~~-q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
.| |.+| .+++.+..+... +.++.++..++..|++ . ++||+|..|..+.
T Consensus 139 tHs~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~~~~~~ 188 (341)
T 2ozl_B 139 QHSQCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----D-NNPVVVLENELMY 188 (341)
T ss_dssp GGCCCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEECHHHH
T ss_pred chhhHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----c-CCCEEEEEChhhh
Confidence 34 5554 788888777664 4577788888888776 2 4999999997653
No 51
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=96.46 E-value=0.0062 Score=59.01 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=50.7
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcc-------------------cCCceeEeccHHH
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIEL-------------------RKPHLGLVGDAKK 331 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~-------------------~~~~~~i~~D~~~ 331 (482)
....+++||++|+||+++..+...+.+....++...+.||.++..... ...++.+.+|+..
T Consensus 214 a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~ 293 (323)
T 1j8f_A 214 MQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQ 293 (323)
T ss_dssp HHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHH
T ss_pred HHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHH
Confidence 345778999999999999765433333334444566789987754321 2247899999999
Q ss_pred HHHHHHHhhh
Q 011590 332 VLEMINKEIK 341 (482)
Q Consensus 332 ~l~~L~~~l~ 341 (482)
++.+|.+.+.
T Consensus 294 ~l~~L~~~lg 303 (323)
T 1j8f_A 294 GCLALAELLG 303 (323)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998864
No 52
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=96.36 E-value=0.045 Score=53.10 Aligned_cols=117 Identities=11% Similarity=-0.014 Sum_probs=79.9
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--hh---h----CCCcEEEEeCCCCcccCCCCC
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--GM---I----NTWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A~---~----~~~Pvl~i~g~~~~~~~~~~~ 121 (482)
-+++.+ -.|++++.+|.|++.. |...++..|.++.+.-+.-.|.+ |+ . .++|++++.. +.....+...
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~ 128 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHH 128 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGG
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCc
Confidence 467755 8999999999999998 55444445778887777777754 32 1 7999998864 2111112112
Q ss_pred CCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 122 FQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
+|..| ..+++.+..+.. .+.++.++..++..|++ .++||++..|..+..
T Consensus 129 hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 129 HSQSP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR-----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp SSCCC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH-----CSSCEEEEEEGGGSS
T ss_pred cchhH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh-----cCCCEEEEechHhcC
Confidence 33333 588888877554 45677888888888875 349999988876643
No 53
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=96.13 E-value=0.024 Score=55.05 Aligned_cols=117 Identities=9% Similarity=-0.062 Sum_probs=80.3
Q ss_pred CcEEecC-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--hh---h----CCCcEEEEeCCCCcccCCCCC
Q 011590 52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--GM---I----NTWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 52 i~~v~~~-~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A~---~----~~~Pvl~i~g~~~~~~~~~~~ 121 (482)
-+++.+- .|++++.+|.|++.. |...++..|.++++.-+.-.|.+ |+ . .++|++++.. +.....+ +.
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~-g~ 126 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHT-PE 126 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCC-CT
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCC-CC
Confidence 5788764 999999999999987 55444444788888777777764 32 2 7999998853 2111112 22
Q ss_pred CCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 122 FQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
+++..+..+++.+.++.. .+.++.++..++..|++ .++||++..|..+..
T Consensus 127 ~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~-----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 127 LHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIR-----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp TSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEEEETTTSS
T ss_pred cccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHHH-----cCCCEEEEechHhcC
Confidence 332234588999887555 45677888888888875 349999988876643
No 54
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=96.12 E-value=0.045 Score=53.43 Aligned_cols=117 Identities=8% Similarity=-0.017 Sum_probs=82.5
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--h---hh----CCCcEEEEeCCCCcccCCCCC
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--G---MI----NTWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A---~~----~~~Pvl~i~g~~~~~~~~~~~ 121 (482)
-+++.+ -.|++++.+|.|++.. |...++..|.++++.-+.-.|.+ | |. .++||+++..... . ..-+.
T Consensus 52 ~r~~~~gisE~~~~~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~-~~G~t 128 (338)
T 1qs0_B 52 SRVFDAPISESGIVGTAVGMGAY-GLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-G-IYGGQ 128 (338)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-S-SSCCS
T ss_pred CcEEEccccHHHHHHHHHHHHhC-CCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-C-CCCcc
Confidence 488876 6999999999999998 54444445788888777787763 3 21 3599998873322 1 12245
Q ss_pred CCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 122 FQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
||......+++.+-++... +.++.++..++..|++ . ++||+|..|..+..
T Consensus 129 h~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~----~-~~Pv~i~~p~~l~r 179 (338)
T 1qs0_B 129 THSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIE----C-DDPVIFLEPKRLYN 179 (338)
T ss_dssp SSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHHHH----S-SSCEEEEEEGGGSS
T ss_pred cccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEEchHhhc
Confidence 6776677889988776554 5677888888888776 2 49999988865543
No 55
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=95.99 E-value=0.003 Score=69.38 Aligned_cols=49 Identities=20% Similarity=0.061 Sum_probs=43.7
Q ss_pred CCCcccchHHHHHHHhhhC-----------CCCcEEEEEcchhcc--CChHHHHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIAC-----------PERLVVAVEGDSGFG--FSAVEVEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~-----------p~~~vi~~~GDGsf~--~~~~eL~T~~r~~l~ 478 (482)
..|+||.+++.|+|+|+++ +++.|++|+|||++. ++..+|..+.+++|+
T Consensus 190 ~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~ 251 (886)
T 2qtc_A 190 PTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLD 251 (886)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCT
T ss_pred cccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCC
Confidence 4699999999999999973 478999999999999 677889999999986
No 56
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=95.66 E-value=0.052 Score=46.22 Aligned_cols=128 Identities=24% Similarity=0.274 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch------------
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA------------ 269 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~------------ 269 (482)
...++++++|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|=-. ..-.|-.|. .+..
T Consensus 18 ~~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v 93 (186)
T 2bru_C 18 ITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPG----HMNVLLAEAKVPYDIV 93 (186)
T ss_dssp --CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSS----THHHHHHHHTCCTTTE
T ss_pred cCHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC----cceEEEEecCCCHHHH
Confidence 3567899999999999999999998888877777776665 4433211 001111111 1111
Q ss_pred ----HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCchhhc--------ccCC-ceeE
Q 011590 270 ----ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCKEEIE--------LRKP-HLGL 325 (482)
Q Consensus 270 ----~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~~~~~--------~~~~-~~~i 325 (482)
..|.-+.+.|++|+||++-.. ...+|-+ .-|. -.++|.+-. ....+ ++++ +.-+
T Consensus 94 ~EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KR-sm~~GyAgv~NpLF~~~nt~Ml 171 (186)
T 2bru_C 94 LEMDEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWK-AQNVIVFKR-SMNTGYAGVQNPLFFKENTHML 171 (186)
T ss_dssp EESCCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTT-SSEEEEECS-SSCCSSCCCSCTTTBSSSEEEE
T ss_pred hhHHHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeecccc-CCEEEEEEC-CCCCCcCCCcCcceecCCceEE
Confidence 124557789999999976421 1112322 1232 223333322 11111 3344 5668
Q ss_pred eccHHHHHHHHHHh
Q 011590 326 VGDAKKVLEMINKE 339 (482)
Q Consensus 326 ~~D~~~~l~~L~~~ 339 (482)
.||++..+++|...
T Consensus 172 fGDAK~~~~~l~~~ 185 (186)
T 2bru_C 172 FGDAKASVDAILKA 185 (186)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHh
Confidence 99999999998765
No 57
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=95.63 E-value=0.035 Score=47.11 Aligned_cols=129 Identities=24% Similarity=0.292 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA------------- 269 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~------------- 269 (482)
..++++++|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|=-- ..-.|-.|. .+..
T Consensus 12 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hmNVLLAEA~VPYd~v~ 87 (180)
T 1pno_A 12 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPG----HMNVLLAEANVPYDEVF 87 (180)
T ss_dssp CHHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTT----HHHHHHHHTTCCGGGEE
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC----cceEEEEeeCCCHHHHh
Confidence 367899999999999999999998888887777777765 4433110 000111111 1111
Q ss_pred ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEec
Q 011590 270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVG 327 (482)
Q Consensus 270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~ 327 (482)
..|.-+.+.|++|+||++-.. ...+|-+ .-|. -.++|.+-..- ...+ ++++ +.-+.|
T Consensus 88 EMdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG 166 (180)
T 1pno_A 88 ELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEK-AGTVLFIKRSMASGYAGVENELFFRNNTMMLFG 166 (180)
T ss_dssp EHHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGTSTTEEEEES
T ss_pred hHHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhh-CCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence 134457789999999976421 1112221 1121 22343333211 1111 3444 567899
Q ss_pred cHHHHHHHHHHhh
Q 011590 328 DAKKVLEMINKEI 340 (482)
Q Consensus 328 D~~~~l~~L~~~l 340 (482)
|++..+++|...+
T Consensus 167 DAK~~~~~l~~~l 179 (180)
T 1pno_A 167 DAKKMTEQIVQAM 179 (180)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998765
No 58
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=95.63 E-value=0.036 Score=47.21 Aligned_cols=131 Identities=23% Similarity=0.356 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA------------- 269 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~------------- 269 (482)
..++++++|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|=-. ..-.|-.|. .+..
T Consensus 11 ~~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v~ 86 (184)
T 1d4o_A 11 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPG----QLNVLLAEAGVPYDIVL 86 (184)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHHTCCGGGEE
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC----cceEEEEEecCCHHHHH
Confidence 467889999999999999999998888887777777765 4433110 000111111 1111
Q ss_pred ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCC--chhhc-----ccCC-ceeEec
Q 011590 270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVC--KEEIE-----LRKP-HLGLVG 327 (482)
Q Consensus 270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d--~~~~~-----~~~~-~~~i~~ 327 (482)
..|.-+.+.|++|+||++-.. ...+|-+ .-|. -.++|.+-.. +...+ ++++ +.-+.|
T Consensus 87 EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG 165 (184)
T 1d4o_A 87 EMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLG 165 (184)
T ss_dssp EHHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGG-SSCEEEEESSSCCCTTCCCCGGGGSTTEEEEES
T ss_pred hHHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhh-CCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence 134457789999999976421 1122322 1232 2234434322 11111 3444 567899
Q ss_pred cHHHHHHHHHHhhhc
Q 011590 328 DAKKVLEMINKEIKD 342 (482)
Q Consensus 328 D~~~~l~~L~~~l~~ 342 (482)
|++..+++|...+++
T Consensus 166 DAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 166 DAKKTCDALQAKVRE 180 (184)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998864
No 59
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=95.62 E-value=0.037 Score=48.25 Aligned_cols=131 Identities=23% Similarity=0.355 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA------------- 269 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~------------- 269 (482)
..++++++|..|++.+|+-|+|..-+.+...+.+|++.| |+-|=-- ..-.|-.|. .+..
T Consensus 34 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v~ 109 (207)
T 1djl_A 34 NLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPG----QLNVLLAEAGVPYDIVL 109 (207)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHTTCCGGGEE
T ss_pred CHHHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCC----CCcEEEEEeCCCHHHHh
Confidence 457889999999999999999998888887777777765 4433110 000111111 1111
Q ss_pred ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEec
Q 011590 270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVG 327 (482)
Q Consensus 270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~ 327 (482)
..|.-+.+.|++|+||++-.. ...+|-+ .-|. -.++|.+-..- ...+ ++++ +.-+.|
T Consensus 110 EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG 188 (207)
T 1djl_A 110 EMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWK-SKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLG 188 (207)
T ss_dssp EHHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTEEEEES
T ss_pred hHHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeeccee-cCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence 134457789999999976421 1123322 1122 22344343221 1111 3444 566899
Q ss_pred cHHHHHHHHHHhhhc
Q 011590 328 DAKKVLEMINKEIKD 342 (482)
Q Consensus 328 D~~~~l~~L~~~l~~ 342 (482)
|++..+++|...+++
T Consensus 189 DAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 189 DAKKTCDALQAKVRE 203 (207)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999998874
No 60
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=95.58 E-value=0.056 Score=57.82 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=82.0
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcCHh
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQV 128 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d~~ 128 (482)
-+++.+ -.|++++.+|.|++...|...++ .|..+.+.-+..+|..+-..+.||+++....... .| . ..||.+.++
T Consensus 402 ~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tHq~~edl 479 (669)
T 2r8o_A 402 GNYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTHQPVEQV 479 (669)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred CCeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCccCCHHHH
Confidence 466654 48999999999999985544444 4667777778888999889999999996422222 23 2 347888889
Q ss_pred hhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 129 EAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 129 ~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+++.+-.... .+.++.++..++..|+ ....+|+||.+|...
T Consensus 480 a~lr~iP~l~V~~Pad~~E~~~~l~~a~----~~~~~Pv~i~~~r~~ 522 (669)
T 2r8o_A 480 ASLRVTPNMSTWRPCDQVESAVAWKYGV----ERQDGPTALILSRQN 522 (669)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHH----HCSSSCEEEECCSSE
T ss_pred HHhcCCCCCEEEecCCHHHHHHHHHHHH----HhCCCcEEEEeCCCC
Confidence 99998866544 3445555555555555 443599999999754
No 61
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=95.52 E-value=0.16 Score=53.63 Aligned_cols=150 Identities=13% Similarity=0.036 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHh-CCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLA 93 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~-~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ 93 (482)
.+++|.+.+++ .=+.+.+-+......+.+.+.+ ..-+++.+ -.|++++.+|.|.+....++ ++..|+++++.-+..
T Consensus 319 ~~~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~-~~~~~f~~Fl~~a~d 396 (616)
T 3mos_A 319 YGQALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTV-PFCSTFAAFFTRAFD 396 (616)
T ss_dssp HHHHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCE-EEEEEEGGGGGGGHH
T ss_pred HHHHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCC-EEEEehHHHHHHHHH
Confidence 34444444433 3344444444322223344432 22377755 59999999999999986543 444577888999999
Q ss_pred HHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEc
Q 011590 94 GLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDL 170 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i 170 (482)
.|..+...+.|++++.. ...-..|. ..+|.+....+++.+-..... +.++.++..++ +.|... +||++|..
T Consensus 397 qi~~~a~~~~~v~~v~~-~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l----~~a~~~-~gp~~ir~ 470 (616)
T 3mos_A 397 QIRMAAISESNINLCGS-HCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAV----ELAANT-KGICFIRT 470 (616)
T ss_dssp HHHHHHHTTCCEEEEEE-SBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHH----HHHHTC-CSEEEEEC
T ss_pred HHHHHHHhCCCeEEEEE-CCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHH----HHHHhc-CCCEEEEE
Confidence 99988889999988743 32222332 246778888999998876543 33455554444 445454 49999999
Q ss_pred Ccc
Q 011590 171 PTD 173 (482)
Q Consensus 171 P~d 173 (482)
|.+
T Consensus 471 ~r~ 473 (616)
T 3mos_A 471 SRP 473 (616)
T ss_dssp CSS
T ss_pred eCC
Confidence 875
No 62
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=95.50 E-value=0.037 Score=54.13 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=82.5
Q ss_pred CcEEecC-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH--h---hh----CCC-cEEEEeCCCCcccCCCC
Q 011590 52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN--G---MI----NTW-PIVMISGSCDQKDFGRG 120 (482)
Q Consensus 52 i~~v~~~-~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~--A---~~----~~~-Pvl~i~g~~~~~~~~~~ 120 (482)
-+++.+- .|++++.+|.|++.. |...++..|.++++.-+.-.|.+ | +. -++ ||+++...... .+-+
T Consensus 67 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~--~~G~ 143 (342)
T 2bfd_B 67 DRVFNTPLCEQGIVGFGIGIAVT-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV--GHGA 143 (342)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC--SSCG
T ss_pred CeEEEcCcCHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC--CCCc
Confidence 4788775 999999999999998 54444445789988877777753 3 21 134 99998553221 1224
Q ss_pred CCCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhcc
Q 011590 121 DFQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 177 (482)
Q Consensus 121 ~~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~ 177 (482)
.+|......+++.+-++.. .+.++.++..++..|++ . ++||+|..|..+...
T Consensus 144 th~~~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~-~~Pv~i~~p~~l~r~ 196 (342)
T 2bfd_B 144 LYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----D-KNPCIFFEPKILYRA 196 (342)
T ss_dssp GGSSCCCHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----S-SSCEEEEEEGGGTTS
T ss_pred chhhHhHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----c-CCcEEEEecchhcCC
Confidence 5677666788888877544 45677888888888776 2 499999888766443
No 63
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.012 Score=57.70 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
...+++||++|+||+++..+...+.+..+..+.++|.||.++... ...++.+.+|+..++.+|.+.+.-
T Consensus 250 ~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~--~~~dl~i~g~~~~vl~~L~~~lgw 318 (354)
T 2hjh_A 250 REDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH--AEFDLSLLGYCDDIAAMVAQKCGW 318 (354)
T ss_dssp HHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT--SCCSEEEESCHHHHHHHHHHHHTC
T ss_pred HHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC--CCcCEEEeCCHHHHHHHHHHHcCC
Confidence 456788999999999997654333222334577899999988653 235899999999999999998864
No 64
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=95.49 E-value=0.0028 Score=69.50 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=42.9
Q ss_pred CCCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhc--cCChHH-HHHHHHcCcc
Q 011590 430 TWGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGF--GFSAVE-VEVWLSCIIM 478 (482)
Q Consensus 430 ~~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf--~~~~~e-L~T~~r~~l~ 478 (482)
+.+.||.++|.|+|+++|.+ +..|+++.|||+| ++..+| |.++..+++|
T Consensus 243 n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp 308 (868)
T 2yic_A 243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 308 (868)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTC
T ss_pred CCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCC
Confidence 35889999999999999953 3479999999998 688999 9999999998
No 65
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=95.46 E-value=0.0092 Score=56.98 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=48.4
Q ss_pred hhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh-hc--ccCCceeEeccHHHHHHHHHHhhh
Q 011590 274 AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE-IE--LRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 274 ~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~-~~--~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
.+++||++|+||+++..+...+.+.....++++|.||.++.. .. ....++.+.+|+..+|++|.+.+.
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 367899999999998754322222223457889999998864 21 223589999999999999998764
No 66
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=95.46 E-value=0.087 Score=56.15 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=80.0
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe-CCCCcccCCCCCCCCcCHhh
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQVE 129 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~ 129 (482)
=+++.+ --|++++.+|.|.+...|...++. |..+-+.-+...|..+-..+.||+++. .+.-.-...-..||.+.+..
T Consensus 403 ~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a 481 (663)
T 3kom_A 403 ANYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVP 481 (663)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred CCeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHH
Confidence 366654 789999999999998845544433 366777777788888888999999985 33322111234578888899
Q ss_pred hhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 130 AVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 130 ~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+++.+....... .++.++ ..+++.|....++||+|.+|..
T Consensus 482 ~lr~iPnl~V~~Pad~~e~----~~~l~~A~~~~~~Pv~ir~~r~ 522 (663)
T 3kom_A 482 SLRLIPNLSVWRPADTIET----MIAWKEAVKSKDTPSVMVLTRQ 522 (663)
T ss_dssp HHHTSTTCEEECCCSHHHH----HHHHHHHHHCSSCCEEEECCSS
T ss_pred HHhcCCCcEEEeeCCHHHH----HHHHHHHHHhCCCCEEEEccCc
Confidence 999988754433 344444 4555555553459999999864
No 67
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=95.40 E-value=0.037 Score=48.04 Aligned_cols=129 Identities=25% Similarity=0.340 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHh---CCcEeeC-CCCCCCCCCCCCcccch-------------
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST---GIPFLPT-PMGKGLLPDTHPLAATA------------- 269 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~---g~pv~~t-~~~~g~~~~~hp~~~G~------------- 269 (482)
..++++++|..|++.+|+-|+|..-+.+...+.+|++.| |+-|=-- ..-.|-.|. .+..
T Consensus 35 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG----hMNVLLAEA~VPYd~v~ 110 (203)
T 2fsv_C 35 SAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPG----HMNVLLAEANVPYDEVF 110 (203)
T ss_dssp CHHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTT----HHHHHHHHTTCCGGGEE
T ss_pred CHHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCC----CccEEEEEecCCHHHHh
Confidence 467789999999999999999998888887777777765 4433110 000111111 1111
Q ss_pred ---HHHHhhhcCCEEEEecCccCc---------ccccCCC--CCCCCCCcEEEEeCCc--hhhc-----ccCC-ceeEec
Q 011590 270 ---ARSLAIGQCDVALVVGARLNW---------LLHFGEP--PKWSKDVKFVLVDVCK--EEIE-----LRKP-HLGLVG 327 (482)
Q Consensus 270 ---~~~~~l~~aDlvl~iG~~~~~---------~~~~g~~--~~~~~~~~ii~id~d~--~~~~-----~~~~-~~~i~~ 327 (482)
..|.-+.+.|++|+||++-.. ...+|-+ .-|. -.++|.+-..- ...+ ++++ +.-+.|
T Consensus 111 EMdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~k-Ak~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfG 189 (203)
T 2fsv_C 111 ELEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWK-AGTVLFIKRSMASGYAGVENELFFRNNTMMLFG 189 (203)
T ss_dssp EHHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGG-SSEEEEEESSSCCCTTCCCCGGGGSTTEEEEES
T ss_pred hHHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeecccc-CCEEEEEECCCCCCcCCCcCcceecCCceEEec
Confidence 133456789999999976421 1112221 1121 22344333221 1111 3444 566899
Q ss_pred cHHHHHHHHHHhh
Q 011590 328 DAKKVLEMINKEI 340 (482)
Q Consensus 328 D~~~~l~~L~~~l 340 (482)
|++..+++|...+
T Consensus 190 DAK~~~~~l~~~l 202 (203)
T 2fsv_C 190 DAKKMTEQIVQAM 202 (203)
T ss_dssp CHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHh
Confidence 9999999998765
No 68
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.014 Score=59.02 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=53.4
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhcC
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDE 343 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~ 343 (482)
...+++||++|++|+++..+...+.+..++.++++|.||.++... ...|+.+.||...++..|.+.+...
T Consensus 388 ~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~--~~~Dl~l~G~cdevv~~L~~~LGw~ 457 (492)
T 4iao_A 388 REDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH--AEFDLSLLGYCDDIAAMVAQKCGWT 457 (492)
T ss_dssp HHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT--SCCSEEEESCHHHHHHHHHHHTTCC
T ss_pred HHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC--CCccEEEeCCHHHHHHHHHHHhCCC
Confidence 356789999999999997654433322335567889999987542 2358999999999999999998754
No 69
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=95.32 E-value=0.023 Score=55.73 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=48.5
Q ss_pred hhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCchh-hc--ccCCceeEeccHHHHHHHHHHhhh
Q 011590 274 AIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE-IE--LRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 274 ~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~~~-~~--~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
.+.+||++|+||+++..+...+.+..+..++++|.||.++.. .. ....++.+.+|+..+|.+|.+.+.
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 456899999999998765433322223457889999998864 21 233589999999999999998764
No 70
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=95.14 E-value=0.18 Score=53.49 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=97.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEec----CCc-ChHHHHHHHHhCCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590 13 QIDGNTLAAKSLSLFG--ATHMFGV----VGI-PVTSLANRAVQLGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVS 84 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~G--v~~vFgv----pG~-~~~~l~~al~~~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~ 84 (482)
.++..+++.+.|.+.. =+.++.+ +++ ....|.+. -.-+++.+ -.|++++.+|.|.+...-||-+.+ +
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~---~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~--~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRV---HPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI--Y 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH---CGGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE--E
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHh---cCcceEeccccHHHHHHHHHHHHHcCCEEEEEe--c
Confidence 4566666666555442 2335544 443 33344432 23477774 499999999999999744444433 6
Q ss_pred ChhhHhhHHH-HHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhc
Q 011590 85 GPGCVHGLAG-LSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 85 GpG~~N~~~a-i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~ 160 (482)
.+.+.-+.-- +..+-..+.||+++...... .+ ...||...+..+++.+..+... +.++.++..++..|++.
T Consensus 396 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~~--- 470 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTH--- 470 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHhC---
Confidence 6776655544 44467789999998854332 23 2357777778899998776654 45677777777777764
Q ss_pred CCCceEEEEcCcch
Q 011590 161 GRPGGCYLDLPTDV 174 (482)
Q Consensus 161 ~~~gPv~l~iP~dv 174 (482)
++||+|.+|...
T Consensus 471 --~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 471 --DGPFAIRYPRGN 482 (629)
T ss_dssp --SSCEEEECCSSB
T ss_pred --CCCEEEEecCCC
Confidence 499999999753
No 71
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=95.10 E-value=0.059 Score=53.26 Aligned_cols=116 Identities=12% Similarity=-0.069 Sum_probs=74.2
Q ss_pred CcEEecC-chHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHH-hhhC--------CCcEEEEeCCCCcccCCCCC
Q 011590 52 VRFIAFH-NEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSN-GMIN--------TWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 52 i~~v~~~-~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~-A~~~--------~~Pvl~i~g~~~~~~~~~~~ 121 (482)
-+++.+- .|++++.+|.|++.. |...++..|.++.+.-+.-.|.+ +-.. ++||+++..... ..+.+.
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg--~~g~g~ 174 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS--GTRGGL 174 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------
T ss_pred CcEEECcccHHHHHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC--CCCCCc
Confidence 5788754 999999999999987 54444444678877777777755 3222 899998775333 223333
Q ss_pred -CCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 122 -FQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 122 -~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
+|..| ..+++.+..+... +.++.++..++..|++ .++||+|..|..+..
T Consensus 175 ~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 175 YHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-----GDDPVVFLEPKILYR 225 (369)
T ss_dssp -----H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-----SSSCEEEEEEGGGSS
T ss_pred cccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEehhhhc
Confidence 34444 6889988877665 4577788888888775 248999998877653
No 72
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=94.88 E-value=0.11 Score=55.45 Aligned_cols=118 Identities=13% Similarity=0.058 Sum_probs=80.8
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe-CCCCcccCCCCCCCCcCHhh
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQVE 129 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~ 129 (482)
-+++.+ -.|++++.+|.|++...|.. .+..|+.+...=+..+|..+-..+.||+++. .+...-...-..||.+.+..
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~-P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla 475 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYR-AYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLM 475 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCE-EEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCE-EEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHH
Confidence 467765 48999999999999875333 2334556666667778888888999999984 33322111123578888889
Q ss_pred hhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+++.+-.+.. .+.++.++..++..|++ ...+||+|.+|...
T Consensus 476 ~lr~iP~l~V~~Pad~~E~~~~l~~A~~----~~~~Pv~i~~~r~~ 517 (651)
T 2e6k_A 476 SLRAMPNLFVIRPADAYETFYAWLVALR----RKEGPTALVLTRQA 517 (651)
T ss_dssp HHHTSTTCEEECCSSHHHHHHHHHHHHH----CCSSCEEEECCSSC
T ss_pred HhcCCCCcEEEecCCHHHHHHHHHHHHH----cCCCCEEEEEeCCC
Confidence 9999866554 34556666666666654 33589999999754
No 73
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=94.85 E-value=0.25 Score=52.31 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=96.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEec----CCc-ChHHHHHHHHhCCCcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590 13 QIDGNTLAAKSLSLFG--ATHMFGV----VGI-PVTSLANRAVQLGVRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVS 84 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~G--v~~vFgv----pG~-~~~~l~~al~~~~i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~ 84 (482)
.++..+++.+.|.+.. =+.++.+ +++ ....|.+ +-.-+++.+ -.|++++.+|.|.+...-||-+. + .
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~---~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~-~-~ 392 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSR---KFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVA-I-Y 392 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHH---HCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEE-E-E
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHH---hCCCceEecCcCHHHHHHHHHHHHHCCCEEEEE-e-h
Confidence 3466666666555442 2335544 443 3333333 234578875 59999999999999974343333 3 6
Q ss_pred ChhhHhhHHH-HHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcCHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhc
Q 011590 85 GPGCVHGLAG-LSNGMINTWPIVMISGSCDQKDFG-R-GDFQELDQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 85 GpG~~N~~~a-i~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~ 160 (482)
.+.+.-+.-- +..+-..++||+++...... .+ . ..||......+++.+..+... +.++.++..++..|++..
T Consensus 393 ~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~-- 468 (621)
T 2o1s_A 393 STFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYN-- 468 (621)
T ss_dssp TTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCC--
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcC--
Confidence 7777656544 45566789999998854332 23 2 346766667889998776554 456777777777777532
Q ss_pred CCCceEEEEcCcch
Q 011590 161 GRPGGCYLDLPTDV 174 (482)
Q Consensus 161 ~~~gPv~l~iP~dv 174 (482)
++||+|..|...
T Consensus 469 --~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 469 --DGPSAVRYPRGN 480 (621)
T ss_dssp --SSCEEEECCSSB
T ss_pred --CCCEEEEeCCCC
Confidence 489999999754
No 74
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=94.84 E-value=0.023 Score=52.52 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=49.5
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
....+++||++|+||+++..+.....+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.+.
T Consensus 161 a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~-~~~~~i~~~~~~~l~~l~~~l~ 231 (235)
T 1s5p_A 161 IYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGN-EFAEKYYGPASQVVPEFVEKLL 231 (235)
T ss_dssp HHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC----CCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCc-cccEEEeCCHHHHHHHHHHHHH
Confidence 346788999999999998754322211111 236889999998865432 4588999999999999987764
No 75
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=94.76 E-value=0.1 Score=55.23 Aligned_cols=116 Identities=11% Similarity=-0.095 Sum_probs=79.2
Q ss_pred cEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEe-CCCCcccCCCCCCCCcCHhhh
Q 011590 53 RFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQVEA 130 (482)
Q Consensus 53 ~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~-g~~~~~~~~~~~~q~~d~~~~ 130 (482)
+++. ---|++++.+|.|.+...|...++.+ ..+=+.-+...|..+-..+.||+++. .+.-.--..-..||.+.+..+
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~ 461 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLST 461 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHH
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHH
Confidence 5554 35799999999999998444333332 45556677788887778899999985 333221111235788888999
Q ss_pred hccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 131 VKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 131 ~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
++.+...... +.++.++..++..|++ .++||||.+|..-
T Consensus 462 lr~iP~l~V~~P~d~~e~~~~l~~A~~-----~~~Pv~ir~~r~~ 501 (632)
T 3l84_A 462 FRAMPNFLTFRPADGVENVKAWQIALN-----ADIPSAFVLSRQK 501 (632)
T ss_dssp HHHSSSCEEECCSSHHHHHHHHHHHHH-----CSSCEEEECCSSC
T ss_pred HhcCCCCEEEecCCHHHHHHHHHHHHh-----CCCCEEEEEcCCC
Confidence 9999876554 4455666666666654 3599999999743
No 76
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=94.66 E-value=0.011 Score=65.37 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=41.6
Q ss_pred CCcccchHHHHHHHhhhCCCC---------cEEEEEcchhc--cCChHH-HHHHHHcCcc
Q 011590 431 WGTMGVGLGYCIAAAIACPER---------LVVAVEGDSGF--GFSAVE-VEVWLSCIIM 478 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p~~---------~vi~~~GDGsf--~~~~~e-L~T~~r~~l~ 478 (482)
-+.+|.++|.|+|+++|.+.+ .||++.|||+| +....| |-++..+++|
T Consensus 320 ~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp 379 (933)
T 2jgd_A 320 PSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYE 379 (933)
T ss_dssp CSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTC
T ss_pred CcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCC
Confidence 367899999999999996443 79999999998 888888 8888889999
No 77
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=94.64 E-value=0.16 Score=54.33 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=78.0
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC-CCCcccCC-C-CCCCCcCH
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFG-R-GDFQELDQ 127 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g-~~~~~~~~-~-~~~q~~d~ 127 (482)
-+++. .-.|++++.+|.|++...|...++. +..+-..-+..+|..+-..+.|++++.. +... .| . ..||.+.+
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~-~~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g--~G~dG~tHq~~ed 478 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGG-TFLNFIGYALGAVRLAAISHHRVIYVATHDSIG--VGEDGPTHQPVEL 478 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCSSH
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEECCccC--cCCCCcccCCHHH
Confidence 45664 4789999999999998754433333 3555556677888888889999998862 2212 23 2 34788888
Q ss_pred hhhhcccccee-eecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 128 VEAVKPFSKFA-VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 128 ~~~~~~~~k~~-~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
..+++.+-... ..+.++.++..++..|+ ..+.+|++|.+|..
T Consensus 479 la~lr~iP~l~V~~Pad~~e~~~~l~~a~----~~~~~Pv~i~~~r~ 521 (673)
T 1r9j_A 479 VAALRAMPNLQVIRPSDQTETSGAWAVAL----SSIHTPTVLCLSRQ 521 (673)
T ss_dssp HHHHHHSTTCEEECCSSHHHHHHHHHHHH----HCTTCCEEEECCSS
T ss_pred HHHHcCCCCCEEEeCCCHHHHHHHHHHHH----HhCCCeEEEEEcCC
Confidence 99999876643 33445556555555555 44359999999975
No 78
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=94.56 E-value=0.15 Score=54.63 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=77.6
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHhC-C-cEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC-CCCcccCC-C-CCCCCc
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLTG-K-PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFG-R-GDFQEL 125 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~tg-k-~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g-~~~~~~~~-~-~~~q~~ 125 (482)
-+++. .-.|++++.+|.|.+...| | |-+ .+..+-..-+..+|..+-..+.||+++.. +... .| . ..||.+
T Consensus 409 ~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~--~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g--~G~dG~tHq~~ 484 (680)
T 1gpu_A 409 GRYIRYGIREHAMGAIMNGISAFGANYKPYG--GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG--VGEDGPTHQPI 484 (680)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHCTTCEEEE--EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG--GCTTCTTTCCS
T ss_pred CceecCCccHHHHHHHHHHHHhcCCCceEEE--eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc--cCCCCCccCCH
Confidence 34554 4679999999999998864 4 444 35556556677888888888999999862 2222 23 2 347888
Q ss_pred CHhhhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 126 DQVEAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 126 d~~~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.++.+++.+-..... +.++.++..++..|+ ...++||+|.+|..
T Consensus 485 edla~lr~iP~l~V~~Pad~~e~~~~l~~A~----~~~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 485 ETLAHFRSLPNIQVWRPADGNEVSAAYKNSL----ESKHTPSIIALSRQ 529 (680)
T ss_dssp SHHHHHHTSSSCEEECCCSHHHHHHHHHHHH----HCSSCCEEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCHHHHHHHHHHHH----HhCCCcEEEEecCC
Confidence 889999988664433 344555555555444 44359999999974
No 79
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=94.53 E-value=0.009 Score=67.22 Aligned_cols=48 Identities=13% Similarity=-0.059 Sum_probs=42.0
Q ss_pred CCcccchHHHHHHHhhhCC--------------CCcEEEEEcchhc--cCChHH-HHHHHHcCcc
Q 011590 431 WGTMGVGLGYCIAAAIACP--------------ERLVVAVEGDSGF--GFSAVE-VEVWLSCIIM 478 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p--------------~~~vi~~~GDGsf--~~~~~e-L~T~~r~~l~ 478 (482)
.+.||.++|.|+|+++|.+ +..++++.|||+| +...+| |.++..+++|
T Consensus 489 ~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp 553 (1113)
T 2xt6_A 489 PSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR 553 (1113)
T ss_dssp CSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTC
T ss_pred CccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCC
Confidence 4679999999999999853 3579999999998 889999 8888899998
No 80
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=94.44 E-value=0.042 Score=53.30 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
+...+++||++|+||+++..+.-.+.+.. ...+.+++.||.++...+ ...++.+.+++.++|.+|.+.|.-
T Consensus 200 A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d-~~adl~i~g~a~evl~~L~~~Lg~ 271 (355)
T 3pki_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD-RHADLRIHGYVDEVMTRLMEHLGL 271 (355)
T ss_dssp HHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG-GGCSEEECSCHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC-CccCEEEeCCHHHHHHHHHHHhCC
Confidence 34567899999999999976543332211 124678999999876543 235789999999999999998763
No 81
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=94.28 E-value=0.17 Score=54.09 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=77.8
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHh--CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC-C-CCCCCcC
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLT--GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG-R-GDFQELD 126 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~t--gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~d 126 (482)
-+++. --.|++++.+|.|++... -||-+. +..+...-+..+|..+-..+.||+++....... .| . ..||.+.
T Consensus 414 ~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~--t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tHq~~e 490 (675)
T 1itz_A 414 ERNVRFGVREHGMGAICNGIALHSPGFVPYCA--TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTHQPIE 490 (675)
T ss_dssp CCBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE--EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSS
T ss_pred CCeEeecccHHHHHHHHHHHHhcCCCCEEEEE--EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCcCcHH
Confidence 34554 348999999999999875 344333 356777777888988889999999987211111 23 2 3578888
Q ss_pred Hhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 127 QVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 127 ~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
++.+++.+-.... .+.++.++..++..|+ ....+||+|.+|..
T Consensus 491 dla~lr~iP~l~V~~Pad~~e~~~~l~~a~----~~~~~Pv~i~~~r~ 534 (675)
T 1itz_A 491 HLVSFRAMPNILMLRPADGNETAGAYKVAV----LNRKRPSILALSRQ 534 (675)
T ss_dssp HHHHHHSSSSCEEECCCSHHHHHHHHHHHH----HCTTSCEEEEECSS
T ss_pred HHHHhccCCCeEEEECCCHHHHHHHHHHHH----HhCCCcEEEEecCC
Confidence 8999998766443 3445555555555554 44359999999974
No 82
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=94.03 E-value=0.024 Score=52.76 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=49.4
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
...+++||++|+||+++..+...+.+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.+.
T Consensus 175 ~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~-~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 175 IGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDD-IATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGG-GCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCc-ceeEEEeCCHHHHHHHHHHHcC
Confidence 45678999999999987654322111001 236889999998876532 2488999999999999988764
No 83
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=93.90 E-value=0.028 Score=52.48 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=50.5
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
....+++||++|+||+++..+...+.+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.++.
T Consensus 177 a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~-~~~~~i~~~~~~~l~~l~~~l~~ 248 (253)
T 1ma3_A 177 AIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADP-IFDVKIIGKAGEVLPKIVEEVKR 248 (253)
T ss_dssp HHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGG-GCSEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCC-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 345678999999999987654322111001 236789999998876532 34889999999999999887653
No 84
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=93.89 E-value=0.042 Score=52.68 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=51.4
Q ss_pred HHHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhhc
Q 011590 271 RSLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 271 ~~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
+...+++||++|++|+++..+.-.+.+.. ...+.+++.||.++...+ ...++.+.+++.++|.+|.+.+.-
T Consensus 200 a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d-~~adl~i~g~~~evl~~L~~~Lg~ 271 (318)
T 3k35_A 200 ADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD-RHADLRIHGYVDEVMTRLMKHLGL 271 (318)
T ss_dssp HHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG-GGCSEEECSCHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC-CcccEEEeCCHHHHHHHHHHHhCC
Confidence 34577899999999999976543221100 124678999999875543 235889999999999999998863
No 85
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=93.67 E-value=0.036 Score=51.61 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=49.1
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
...+++||++|++|+++..+...+.+... ..++++|.||.++..... ..++.+.+|+.++|++|.+.+.
T Consensus 172 ~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~-~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 172 MREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTP-IADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGG-GCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCc-ceeEEEeCCHHHHHHHHHHHHH
Confidence 35678899999999987654322111001 247889999998876532 3478999999999999987764
No 86
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=93.33 E-value=0.049 Score=51.41 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCC-CCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHH
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMIN 337 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~ 337 (482)
...+++||++|+||+++..+.-.+.... ...+++++.||.++..... ..++.+.+++.++|.+|+
T Consensus 207 ~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~-~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 207 DRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATN-RFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGG-GSSEEEESCHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCc-ceeEEEeCCHHHHHHHHh
Confidence 3567899999999999976443222111 1357899999998866542 457889999999999875
No 87
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=93.04 E-value=0.39 Score=51.28 Aligned_cols=114 Identities=14% Similarity=0.019 Sum_probs=75.1
Q ss_pred cEEe-cCchHHHHHHHHHHHhHhC-CcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHh
Q 011590 53 RFIA-FHNEQSAGYAASAYGYLTG-KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQV 128 (482)
Q Consensus 53 ~~v~-~~~E~~A~~~A~g~ar~tg-k~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~ 128 (482)
+++. ---|++++.+|.|.|...| ||-+. |..+-..=+..+|..+-..+.||+++....... .| -..||.+.+.
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~--tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~ied~ 504 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG--TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEPIEQL 504 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE--EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCCSSHH
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE--ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCCHHHH
Confidence 5554 3579999999999999844 44443 223322334556777777899999997432221 23 2347888889
Q ss_pred hhhccccceeeec-CCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 129 EAVKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 129 ~~~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+++.+-...... .++.++ ..+++.|.....+||+|.+|..
T Consensus 505 a~lr~iPnl~V~~Pad~~E~----~~~l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 505 AALRAMPNVSVIRPADGNES----VAAWRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp HHHHTSTTCEEECCSSHHHH----HHHHHHHHHCSSSCEEEECCSS
T ss_pred HHHhcCCCCEEEeeCCHHHH----HHHHHHHHHcCCCCEEEEeecc
Confidence 9999998766443 344444 4555555555469999999974
No 88
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=92.95 E-value=0.46 Score=50.93 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=77.3
Q ss_pred CcEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCC--CCCCCCcCHh
Q 011590 52 VRFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFG--RGDFQELDQV 128 (482)
Q Consensus 52 i~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~ 128 (482)
=+++.+ --|++++.+|.|.+...|...++.+ ..+=+.-+...|..+-..+.||+++....... .| -..||.+.+.
T Consensus 448 ~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq~~ed~ 525 (711)
T 3uk1_A 448 GNHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQSVEHV 525 (711)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTCCSSHH
T ss_pred CcEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccCChhHH
Confidence 356643 6799999999999986455444433 33333445567777667899999886322111 22 2357888889
Q ss_pred hhhccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 129 EAVKPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 129 ~~~~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
.+++.+-..... +.++.++..++..|++ .++||||.+|..
T Consensus 526 a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~-----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 526 ASLRLIPNLDVWRPADTVETAVAWTYAVA-----HQHPSCLIFSRQ 566 (711)
T ss_dssp HHHHTSTTCEEECCSSHHHHHHHHHHHHH-----SSSCEEEECCSS
T ss_pred HHHhcCCCCEEEecCCHHHHHHHHHHHHh-----cCCCEEEEeeCC
Confidence 999999876554 4566677666666665 359999999864
No 89
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=92.39 E-value=0.038 Score=52.57 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=47.6
Q ss_pred HHhhhcCCEEEEecCccCcccccCCCCCC-CCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
...+++||++|+||+++..+...+.+... ..+++++.||.++........++.+.+|+.++++ |.+.++
T Consensus 211 ~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~~l~ 280 (290)
T 3u31_A 211 EEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTK-VANILK 280 (290)
T ss_dssp HHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHH-HHHHHH
T ss_pred HHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHH-HHHHHh
Confidence 35678999999999998754322211111 2568899999988766433458899999998775 555554
No 90
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=92.35 E-value=0.78 Score=49.03 Aligned_cols=116 Identities=13% Similarity=0.029 Sum_probs=76.2
Q ss_pred cEEec-CchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC-CCCcccCCCCCCCCcCHhhh
Q 011590 53 RFIAF-HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG-SCDQKDFGRGDFQELDQVEA 130 (482)
Q Consensus 53 ~~v~~-~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g-~~~~~~~~~~~~q~~d~~~~ 130 (482)
+++.+ --|++++.+|.|.+...|...++- |..+=+.-+...|..+-..+.||+++.. +.-.--..-..||.+.++.+
T Consensus 433 R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~ 511 (700)
T 3rim_A 433 RTLHFGVREHAMGAILSGIVLHGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSA 511 (700)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHH
T ss_pred ceeecCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHH
Confidence 66643 679999999999999845433333 3333233456678777888999999863 22111112245788899999
Q ss_pred hccccceeeec-CCcCcHHHHHHHHHHHhhcCCC--ceEEEEcCcc
Q 011590 131 VKPFSKFAVKA-KDITEVPKCVAQVLERAVSGRP--GGCYLDLPTD 173 (482)
Q Consensus 131 ~~~~~k~~~~~-~~~~~~~~~l~~A~~~a~~~~~--gPv~l~iP~d 173 (482)
++.+-...... .++.++ ..+++.|+..+. |||+|.+|..
T Consensus 512 lr~iPnl~V~~Pad~~e~----~~~l~~Ai~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 512 LRAIPRLSVVRPADANET----AYAWRTILARRNGSGPVGLILTRQ 553 (700)
T ss_dssp HHTSTTCEEECCSSHHHH----HHHHHHHHTTTTCSSCEEEECCSS
T ss_pred HhcCCCCEEEeCCCHHHH----HHHHHHHHHccCCCCCEEEEeccc
Confidence 99988755443 344444 455555556554 7999999874
No 91
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=92.27 E-value=0.29 Score=51.06 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=74.5
Q ss_pred CCcEEecCchH---HHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC--------
Q 011590 51 GVRFIAFHNEQ---SAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG-------- 118 (482)
Q Consensus 51 ~i~~v~~~~E~---~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~-------- 118 (482)
+.+++..+--. +..-+|.|.+.+.+|+.+|++--| ++.-.+..|..|...+.|+++|.-+-.... .+
T Consensus 406 ~~~~~~~~g~~g~~G~l~~A~Gaa~a~~~~vv~i~GDG-sf~~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~ 484 (556)
T 3hww_A 406 GYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDL-SALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSE 484 (556)
T ss_dssp TCCEEECCSSCCSSSHHHHHHHHHHHHCCCEEEEEEHH-HHHHTGGGHHHHTTCSSCEEEEEEESCC-------------
T ss_pred CceEEecCcccccccHHHHHHHHHhcCCCcEEEEEccH-HhhhcchhhHhhcccCCCcEEEEEECCCCCcccCCCCcchh
Confidence 45566543221 114567888888888888877555 344456789899999999988876543210 00
Q ss_pred C----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 119 R----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 119 ~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
. ...+..|...+.+.+.-...++++++++ ++|++.+... .||+.|++..|-
T Consensus 485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~al~~a~~~-~gp~liev~~~~ 539 (556)
T 3hww_A 485 RERFYLMPQNVHFEHAAAMFELKYHRPQNWQEL----ETAFADAWRT-PTTTVIEMVVND 539 (556)
T ss_dssp ----CCCCCCCCSHHHHHHTTCEEECCSSHHHH----HHHHHHHTTS-SSEEEEEEECCS
T ss_pred HHHhccCCCCCCHHHHHHHcCCcEEecCCHHHH----HHHHHHHHhC-CCCEEEEEECCc
Confidence 0 1123456667777776666777776554 5555566564 499999998764
No 92
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=91.39 E-value=0.11 Score=56.25 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=30.1
Q ss_pred CCcccchHHHHHHHhhhCCCCcEEEEEcchh
Q 011590 431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461 (482)
Q Consensus 431 ~g~mG~~l~~AiGaala~p~~~vi~~~GDGs 461 (482)
.|+||+|++.|+|+++.+|+..|++++|||.
T Consensus 174 tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe 204 (845)
T 3ahc_A 174 GGELGYALSHAYGAVMNNPSLFVPCIIGDGE 204 (845)
T ss_dssp CSSTTCHHHHHHHHHTTCTTCEEEEEEETTG
T ss_pred CCCccchHhHHhhhhhcCCCCeEEEEECCCc
Confidence 6999999999999999999999999999999
No 93
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=91.21 E-value=0.58 Score=48.73 Aligned_cols=108 Identities=8% Similarity=0.066 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C-------CC----CCCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F-------GR----GDFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~-------~~----~~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +|+.+|++--|. +.-.+..|.+|...+.|+++|.-+-.... . +. ..++..|...
T Consensus 411 ~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~ 489 (549)
T 3eya_A 411 AMPQALGAQATEPERQVVAMCGDGG-FSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFAR 489 (549)
T ss_dssp HHHHHHHHHHHSTTSCEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCCCC------------CCBCCCCCHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHHH
Confidence 556678888875 677777775553 44447789999999999887765443211 0 00 1123457777
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
+++.+.-...++++++++.+.+++|++ . .||+.|++..|-.+
T Consensus 490 ~a~a~G~~~~~v~~~~~l~~al~~a~~----~-~gp~liev~~~~~~ 531 (549)
T 3eya_A 490 IAEACGITGIRVEKASEVDEALQRAFS----I-DGPVLVDVVVAKEE 531 (549)
T ss_dssp HHHHTTSEEEEECSGGGHHHHHHHHHH----S-SSCEEEEEEBCCCC
T ss_pred HHHHcCCcEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEecccc
Confidence 777776667788888888777666654 3 48999999877543
No 94
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=90.89 E-value=0.62 Score=45.80 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=68.4
Q ss_pred HHHHHHHHHhHh---CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccc
Q 011590 63 AGYAASAYGYLT---GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPF 134 (482)
Q Consensus 63 A~~~A~g~ar~t---gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~ 134 (482)
..-+|.|.+++. +.-.++++..|=|..+. .-++..|...+.|+|+|.-+........ ......|....++.+
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~ 226 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAA 226 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGT
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHC
Confidence 444566777653 22233444446666663 2367788899999999986543211110 011123445556665
Q ss_pred cceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhc
Q 011590 135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176 (482)
Q Consensus 135 ~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~ 176 (482)
.-...+++ +++++.+.+++|+..+..+. ||+.|++-.+-..
T Consensus 227 G~~~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~r~~ 269 (368)
T 1w85_A 227 GIPGIQVDGMDPLAVYAAVKAARERAINGE-GPTLIETLCFRYG 269 (368)
T ss_dssp TCCEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECCCSS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEeeccC
Confidence 44445564 57788888888888887765 8999998665443
No 95
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.17 E-value=0.7 Score=48.58 Aligned_cols=110 Identities=10% Similarity=0.071 Sum_probs=72.8
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C---------CC-C-CCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F---------GR-G-DFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~---------~~-~-~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|++++.-+-.... . .+ + .++..|...
T Consensus 418 ~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~ 496 (590)
T 1v5e_A 418 AIPGGLGAKNTYPDRQVWNIIGDGA-FSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAK 496 (590)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHH
T ss_pred hHHHHHHHHHhCCCCeEEEEEechH-HhchHHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHH
Confidence 445677777764 567777775553 44446889999999999888875432111 0 00 0 023457777
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
+++.+.-...++++++++.+.+++|+..+.. .||+.|++..|-.
T Consensus 497 ~a~a~G~~~~~v~~~~el~~al~~a~~~~~~--~gp~liev~~~~~ 540 (590)
T 1v5e_A 497 IAEAQGAKGFTVSRIEDMDRVMAEAVAANKA--GHTVVIDCKITQD 540 (590)
T ss_dssp HHHHTTSEEEEECBHHHHHHHHHHHHHHHHT--TCCEEEEEECCSC
T ss_pred HHHHcCCEEEEECCHHHHHHHHHHHHHhcCC--CCCEEEEEEeccc
Confidence 8888766677888888887777777765443 4899999887643
No 96
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=89.73 E-value=0.72 Score=48.20 Aligned_cols=106 Identities=14% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc--cCCC----CC-----CCCcCHhhhh
Q 011590 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGR----GD-----FQELDQVEAV 131 (482)
Q Consensus 63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~--~~~~----~~-----~q~~d~~~~~ 131 (482)
+.-+|.|.+.+.+|+.++++--|. +.-.+..|..|...+.|+++|.-+-... .... +. .+..|...++
T Consensus 431 ~l~~AiGaala~~~~vv~i~GDGs-f~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a 509 (568)
T 2c31_A 431 GMGYCVAAAAVTGKPVIAVEGDSA-FGFSGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMM 509 (568)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEHHH-HHTTGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHH
T ss_pred cHHHHHHHHhCCCCcEEEEEcchH-hhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHH
Confidence 355677777777888887775443 3333678889999999999888655431 1100 00 2335777778
Q ss_pred ccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 132 ~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+.+.-...++++++++.+.+++|+. . .||+.|++..|-
T Consensus 510 ~a~G~~~~~v~~~~el~~al~~a~~----~-~~p~liev~~~~ 547 (568)
T 2c31_A 510 EAFGGKGYVANTPAELKAALEEAVA----S-GKPCLINAMIDP 547 (568)
T ss_dssp HTTTCEEEEESSHHHHHHHHHHHHH----H-TSCEEEEEEBCT
T ss_pred HHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEecc
Confidence 8876667788887777666666653 2 489999998774
No 97
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=88.00 E-value=0.58 Score=46.68 Aligned_cols=106 Identities=13% Similarity=0.032 Sum_probs=63.1
Q ss_pred HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCC-CCcCHhhhhcc
Q 011590 65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDF-QELDQVEAVKP 133 (482)
Q Consensus 65 ~~A~g~ar~t-----gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~-q~~d~~~~~~~ 133 (482)
-+|.|.+++. ++..+|++ |=|.++. .-++..|...++|+|+|.-+........ ... ...|....++.
T Consensus 188 p~AvGaA~A~k~~~~~~~vv~i~--GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a 265 (407)
T 1qs0_A 188 VQAVGWAMASAIKGDTKIASAWI--GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVG 265 (407)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEE--ETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHH
T ss_pred hHHHHHHHHHHHhCCCCEEEEEE--CCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHH
Confidence 3456666543 44444444 5566653 4578888889999998885442111100 001 11233344555
Q ss_pred ccceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 134 FSKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 134 ~~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.-...+++ +++++.+.+.+|+..+..+. ||+.|++-.+
T Consensus 266 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 306 (407)
T 1qs0_A 266 CGIASLRVDGNDFVAVYAASRWAAERARRGL-GPSLIEWVTY 306 (407)
T ss_dssp TTCEEEEEETTCHHHHHHHHHHHHHHHHTTS-CCEEEEEECC
T ss_pred cCCeEEEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEEee
Confidence 444445554 45678888888888887765 8999998654
No 98
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=87.79 E-value=2.6 Score=39.79 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=66.3
Q ss_pred HHHHHHHhCCcEeeCC--CCCCCCCCCCCcccc--hHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeCCc
Q 011590 238 LKKLVESTGIPFLPTP--MGKGLLPDTHPLAAT--AARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCK 313 (482)
Q Consensus 238 l~~lae~~g~pv~~t~--~~~g~~~~~hp~~~G--~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~d~ 313 (482)
+..=|-+.++|++-.. .-.|=+|+.+.--.- ..-...++++|+||.+.+-+-...+.. ..+...+++.||++|
T Consensus 230 Imy~cvk~~VPfVLAGSIRDDGPLPdvitdv~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGN---m~Ps~v~~~cVDInp 306 (345)
T 3c2q_A 230 IMYQCIKNNIPYVLAGSIRDDGPIPDVITDSMVAQDKMRTTVMDKKMVIMLSTLLHSVATGN---LMPSYIKTVCVDIQP 306 (345)
T ss_dssp HHHHHHHTTCCEEEECCTTCSSCCTTCBCBHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHT---TCCTTSEEEEEESCH
T ss_pred hHHHHHhCCCCEEEEeeccCCCCCCcccccHHHHHHHHHHHhccCCchHHHHHHHHHHHhcc---cCcccceEEEEECCH
Confidence 3344556777766322 223444443221110 123457889999999999887655433 235567899999999
Q ss_pred hhhcc----cC-CceeEeccHHHHHHHHHHhhhc
Q 011590 314 EEIEL----RK-PHLGLVGDAKKVLEMINKEIKD 342 (482)
Q Consensus 314 ~~~~~----~~-~~~~i~~D~~~~l~~L~~~l~~ 342 (482)
....+ .. ..+.++.|+..||..|.+.|.+
T Consensus 307 ~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~L~~ 340 (345)
T 3c2q_A 307 STVTKLMDRGTSQAIGVVTDVGVFLVLLLKELER 340 (345)
T ss_dssp HHHHHHHHTCCSSEEEEESCHHHHHHHHHHHHHH
T ss_pred HHhhhhhccCceeEEEEEecHHHHHHHHHHHHHH
Confidence 86642 22 3688999999999999888753
No 99
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=87.45 E-value=1.3 Score=46.10 Aligned_cols=106 Identities=8% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcc--cCC-----CCC------CCCcCHhh
Q 011590 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFG-----RGD------FQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~--~~~-----~~~------~q~~d~~~ 129 (482)
+.-+|.|.+.+.+|+.+|++--|. +.-.+..|..|...+.|+++|.-+-... ... .+. ....|...
T Consensus 426 ~l~~AiGaa~a~~~~vv~i~GDGs-f~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 504 (564)
T 2q28_A 426 GMGYAIGASVTSGSPVVAIEGDSA-FGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDK 504 (564)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEHHH-HHTTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGGG
T ss_pred hHHHHHHHhhcCCCcEEEEEcchH-hhccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHHH
Confidence 556677777777888888775543 3233578888999999998887655431 111 010 11346667
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+++.+.-...++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 505 ~a~a~G~~~~~v~~~~el~~al~~a~----~~-~~p~liev~~~~ 544 (564)
T 2q28_A 505 LMDAFRGVGYNVTTTDELRHALTTGI----QS-RKPTIINVVIDP 544 (564)
T ss_dssp GGGGGTCEEEEECSHHHHHHHHHHHH----HH-TSCEEEEEEBCT
T ss_pred HHHHcCCeEEEeCCHHHHHHHHHHHH----hC-CCCEEEEEEecc
Confidence 77777666778887777766666665 32 389999988773
No 100
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=87.38 E-value=0.71 Score=48.47 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=89.5
Q ss_pred HHHHHHhc-CCCEEEec-CCcChHHHHHHHH-hCCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCChhhHhhH
Q 011590 20 AAKSLSLF-GATHMFGV-VGIPVTSLANRAV-QLGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 20 l~~~L~~~-Gv~~vFgv-pG~~~~~l~~al~-~~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~ 92 (482)
+++.|.+. .=+.++.. .|.........+. ....+++..+. =..+.-+|.|.+.+. +++.+|++--|. +...+
T Consensus 380 ~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~-~~~~~ 458 (589)
T 2pgn_A 380 AMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGA-LYYHF 458 (589)
T ss_dssp HHHHHHHTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH-HHHHG
T ss_pred HHHHHHHhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHH-HHhhH
Confidence 34444443 32334333 3443344444332 23345654321 122556678888765 477777775554 44446
Q ss_pred HHHHHhhhCCCcEEEEeCCCCccc-C--------CC---CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQKD-F--------GR---GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS 160 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~---~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~ 160 (482)
.+|..|...+.|+++|.-+-.... . +. ..+...|...+++.+.-...++++++++.+.+++|+.
T Consensus 459 ~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~---- 534 (589)
T 2pgn_A 459 NEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVRETGDIAGALQRAID---- 534 (589)
T ss_dssp GGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHHH----
T ss_pred HHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHh----
Confidence 899999999999888876553211 0 00 1233457777778776667788999998888887764
Q ss_pred CCCceEEEEcCcch
Q 011590 161 GRPGGCYLDLPTDV 174 (482)
Q Consensus 161 ~~~gPv~l~iP~dv 174 (482)
. .||+.|++..|-
T Consensus 535 ~-~gp~liev~~~~ 547 (589)
T 2pgn_A 535 S-GKPALIEIPVSK 547 (589)
T ss_dssp H-CSCEEEEEECCS
T ss_pred C-CCCEEEEEEecC
Confidence 2 489999988763
No 101
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.89 E-value=0.63 Score=48.79 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=63.2
Q ss_pred HHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC-----C--C-------CCCCcCHh
Q 011590 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG-----R--G-------DFQELDQV 128 (482)
Q Consensus 64 ~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~-----~--~-------~~q~~d~~ 128 (482)
.-+|.|.+. .+|+.+|++--| ++.-.+..|..|...+.|+++|.-+-.... .+ . . ..+..|..
T Consensus 442 l~~AiGaa~-~~~~vv~i~GDG-sf~~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 519 (578)
T 3lq1_A 442 VSSALGASV-VFQPMFLLIGDL-SFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFR 519 (578)
T ss_dssp HHHHHHHTT-TSSSEEEEEEHH-HHHHTGGGGHHHHHTTCCEEEEEECCC-------------------------CCCTH
T ss_pred HHHHHHHhc-CCCCEEEEEchH-HHHhhHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHH
Confidence 456778874 478888777544 233336788889999999998876543211 00 0 0 01234666
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.+.+.-...++++++++ ++|++.+... .||+.|++..|-
T Consensus 520 ~~a~a~G~~~~~v~~~~el----~~al~~a~~~-~gp~liev~~~~ 560 (578)
T 3lq1_A 520 FAAAFYDADYHEAKSVDEL----EEAIDKASYH-KGLDIIEVKTNR 560 (578)
T ss_dssp HHHHHTTCEEEECCSHHHH----HHHHHHHTTS-SSEEEEEEC---
T ss_pred HHHHHcCCceEecCCHHHH----HHHHHHHHhC-CCCEEEEEECCc
Confidence 6777776666788776665 4555555554 499999998775
No 102
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=86.78 E-value=1.2 Score=46.41 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC----------C-C-CCCCCcCHhh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF----------G-R-GDFQELDQVE 129 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~----------~-~-~~~q~~d~~~ 129 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|+++|.-+-..... + . ..++..|...
T Consensus 425 ~l~~AiGaala~~~~~vv~i~GDG~-~~~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 503 (566)
T 1ozh_A 425 ALPWAIGAWLVNPERKVVSVSGDGG-FLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKA 503 (566)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEEHHH-HHHHTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHH
T ss_pred hHHHHHHHHHhCCCCCEEEEEcChH-HhccHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHH
Confidence 445677877765 467777665443 344467899999999998888865532210 0 0 1234467778
Q ss_pred hhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
+++.+.-...++++++++.+.+++|+. . .||+.|++..+-
T Consensus 504 ~a~a~G~~~~~v~~~~el~~al~~a~~----~-~gp~liev~~~~ 543 (566)
T 1ozh_A 504 YAESFGAKGFAVESAEALEPTLRAAMD----V-DGPAVVAIPVDY 543 (566)
T ss_dssp HHHTTTSEEEECCSGGGHHHHHHHHHH----S-SSCEEEEEEBCC
T ss_pred HHHHcCCeEEEeCCHHHHHHHHHHHHh----C-CCCEEEEEEeCC
Confidence 888886667788888888777776663 3 489999988763
No 103
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=86.25 E-value=1.7 Score=45.82 Aligned_cols=110 Identities=9% Similarity=-0.053 Sum_probs=74.5
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC--------CCCC-
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FGR--------GDFQ- 123 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~--------~~~q- 123 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|+++|.-+-.... .+. ...+
T Consensus 447 ~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (616)
T 2pan_A 447 TIPAALGVCAADPKRNVVAISGDFD-FQFLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSS 525 (616)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEEHHH-HHHTGGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCG
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchh-hhCCHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCccccccccccccc
Confidence 667788888875 467777665553 44446799999999999877775443211 010 0011
Q ss_pred -----CcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 124 -----ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 124 -----~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..|...+++.+.-...++++++++.+.+++|+..+...+ ||+.|++..+-
T Consensus 526 ~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~~~~~-gp~lIev~~~~ 580 (616)
T 2pan_A 526 EVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYR-VPVVVEVILER 580 (616)
T ss_dssp GGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHHHHHHHHC-SCEEEEEEBCS
T ss_pred cCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHHhhcccCC-CcEEEEEEecc
Confidence 256667777776666788899999888888887655433 89999988764
No 104
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=86.11 E-value=1.8 Score=45.58 Aligned_cols=157 Identities=11% Similarity=0.060 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCCc-ChHHHHHHHH-hCCCcEEecCc---hHHHHHHHHHHHhHh-CCcEEEEEcCCh
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVGI-PVTSLANRAV-QLGVRFIAFHN---EQSAGYAASAYGYLT-GKPGILLTVSGP 86 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG~-~~~~l~~al~-~~~i~~v~~~~---E~~A~~~A~g~ar~t-gk~~v~~~t~Gp 86 (482)
.++-..++-...+..+=+.++....+ +.......+. ..+-+++.... =..+.-+|.|.+.+. +++.+|++--|.
T Consensus 370 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~ 449 (603)
T 4feg_A 370 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGG 449 (603)
T ss_dssp BCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHH
T ss_pred CcCHHHHHHHHHHhCCCCCEEEECCchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHH
Confidence 34444443333444454555555333 2222223232 12345554321 112445677777765 566666664443
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEeCCCCcccC--------CCC-----CCCCcCHhhhhccccceeeecCCcCcHHHHHHH
Q 011590 87 GCVHGLAGLSNGMINTWPIVMISGSCDQKDF--------GRG-----DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQ 153 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~--------~~~-----~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~ 153 (482)
+.-.+.+|..|...+.|+++|.-+-..... +.. .+...|...+++.+.-...++++++++.+.+++
T Consensus 450 -~~~~~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~ 528 (603)
T 4feg_A 450 -ASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQ 528 (603)
T ss_dssp -HHHHGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEECBGGGHHHHHHH
T ss_pred -HhhhHHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHH
Confidence 444466788899999999888765532210 011 123457777877776667788888887776666
Q ss_pred HHHHhhcCCCceEEEEcCcc
Q 011590 154 VLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 154 A~~~a~~~~~gPv~l~iP~d 173 (482)
|+.. .. .||++|++..+
T Consensus 529 a~~~--~~-~gP~lIev~~~ 545 (603)
T 4feg_A 529 AKAI--AQ-HEPVLIDAVIT 545 (603)
T ss_dssp HHHH--TT-TSCEEEEEECC
T ss_pred HHHh--cC-CCcEEEEEEeC
Confidence 6531 43 49999999875
No 105
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=85.34 E-value=0.8 Score=44.96 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=59.6
Q ss_pred HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCCC-C--CCCcCHhhhhcc
Q 011590 65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGRG-D--FQELDQVEAVKP 133 (482)
Q Consensus 65 ~~A~g~ar~t-----gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~-~--~q~~d~~~~~~~ 133 (482)
-.|.|.+++. +++.+|+ .|=|+++. .-++..|...+.|+|+|.-+.... .... . ....|... +.
T Consensus 147 p~A~G~A~A~~~~~~~~~vv~~--~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g-~~t~~~~~~~~~~~~~--ra 221 (365)
T 2ozl_A 147 PLGAGIALACKYNGKDEVCLTL--YGDGAANQGQIFEAYNMAALWKLPCIFICENNRYG-MGTSVERAAASTDYYK--RG 221 (365)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEE--EETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEEHHHHCSCCCGGG--TT
T ss_pred HHHHHHHHHHHhcCCCceEEEE--ECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcc-cCCCcccccCCCCHHH--Hh
Confidence 3456666543 3444444 46666663 347888989999999998443111 1000 0 00111111 22
Q ss_pred ccceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 134 FSKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 134 ~~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.--..+++ +++++.+.+++|+..+..++ ||+.|++-.+
T Consensus 222 ~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~-gP~lIe~~t~ 262 (365)
T 2ozl_A 222 DFIPGLRVDGMDILCVREATRFAAAYCRSGK-GPILMELQTY 262 (365)
T ss_dssp TTSCEEEEETTCHHHHHHHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEee
Confidence 211223444 67888888888988888775 9999998654
No 106
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=84.91 E-value=1.7 Score=45.21 Aligned_cols=149 Identities=12% Similarity=0.081 Sum_probs=85.6
Q ss_pred HHHHHHHhc-CCCEEEecCCcC-hHHHHHHHHh-CCCcEEecC---chHHHHHHHHHHHhHh---CCcEEEEEcCChhhH
Q 011590 19 LAAKSLSLF-GATHMFGVVGIP-VTSLANRAVQ-LGVRFIAFH---NEQSAGYAASAYGYLT---GKPGILLTVSGPGCV 89 (482)
Q Consensus 19 ~l~~~L~~~-Gv~~vFgvpG~~-~~~l~~al~~-~~i~~v~~~---~E~~A~~~A~g~ar~t---gk~~v~~~t~GpG~~ 89 (482)
.+++.|.+. .=+.++..-.+. .+.....+.- ..-+++... .=..+.-+|.|.+.+. +++.+|++--|. +.
T Consensus 374 ~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~-~~ 452 (563)
T 2uz1_A 374 HASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGS-VG 452 (563)
T ss_dssp HHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHH-HG
T ss_pred HHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHH-Hh
Confidence 344555443 334444443332 2333443432 234455422 1123445677877764 677777775553 44
Q ss_pred hhHHHHHHhhhCCCcEEEEeCCCCccc---------CCC-C----CCCCcCHhhhhccccceeeecCCcCcHHHHHHHHH
Q 011590 90 HGLAGLSNGMINTWPIVMISGSCDQKD---------FGR-G----DFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVL 155 (482)
Q Consensus 90 N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~~-~----~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~ 155 (482)
-.+.+|..|...+.|+++|.-+-.... .+. . .++..|...+++.+.-...++++++++.+.+++|+
T Consensus 453 ~~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~ 532 (563)
T 2uz1_A 453 YSIGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVDSVESFSAALAQAL 532 (563)
T ss_dssp GGTTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH
Confidence 446799999999999887775443210 011 1 12345777788887666677877766666555554
Q ss_pred HHhhcCCCceEEEEcCcc
Q 011590 156 ERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 156 ~~a~~~~~gPv~l~iP~d 173 (482)
.. .||+.|++..+
T Consensus 533 ----~~-~gp~liev~~~ 545 (563)
T 2uz1_A 533 ----AH-NRPACINVAVA 545 (563)
T ss_dssp ----HS-SSCEEEEEECC
T ss_pred ----HC-CCCEEEEEEec
Confidence 33 48999999887
No 107
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=83.66 E-value=2.6 Score=41.80 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=63.1
Q ss_pred HHHHHHHhHh-----CCcEEEEEcCChhhHhh---HHHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccc
Q 011590 65 YAASAYGYLT-----GKPGILLTVSGPGCVHG---LAGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPF 134 (482)
Q Consensus 65 ~~A~g~ar~t-----gk~~v~~~t~GpG~~N~---~~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~ 134 (482)
-+|.|.+++. ++..+|++ |=|..+. .-++..|...++|+|+|.-+......+. ......|....++.+
T Consensus 169 p~AvG~AlA~~~~~~~~~vv~~~--GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 169 PQAVGAAYAAKRANANRVVICYF--GEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEE--ETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGG
T ss_pred cHHHHHHHhhhhhCCCCeEEEEE--CchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHc
Confidence 3455666543 34455544 5454432 2577788888999999986542221111 011123455556665
Q ss_pred cceeeecC--CcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 135 SKFAVKAK--DITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 135 ~k~~~~~~--~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.-...+++ +++++.+.+.+|+..+.... ||+.|++-..-
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-~P~lIe~~tyR 287 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAEN-QPFLIEAMTYR 287 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHT-CCEEEEEECCC
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCEEEEEEeee
Confidence 44444554 56688888888888776654 89999886643
No 108
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=83.05 E-value=1.9 Score=44.81 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=66.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CCC----CCCCCcCHhhhhc
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FGR----GDFQELDQVEAVK 132 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~~----~~~q~~d~~~~~~ 132 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+..+..|...+.|++++.-+-.... .+. ..++..|...+++
T Consensus 413 ~l~~A~G~a~a~~~~~vv~~~GDG~-~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 491 (552)
T 1ovm_A 413 TLAAAFGAQTACPNRRVIVLTGDGA-AQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQ 491 (552)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHHH-HHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGSTT
T ss_pred HHHHHHHHHHhCCCCcEEEEECchH-HHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHHHH
Confidence 445577777764 467777665443 33346788889999999888875543211 011 1233457777777
Q ss_pred cccc----eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 133 PFSK----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 133 ~~~k----~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.- ...++++++++ .+|++.+... .||+.|++..+-
T Consensus 492 a~G~~~~~~~~~v~~~~~l----~~al~~a~~~-~gp~liev~~~~ 532 (552)
T 1ovm_A 492 ALSLDPQSECWRVSEAEQL----ADVLEKVAHH-ERLSLIEVMLPK 532 (552)
T ss_dssp TSCSSCCEEEEEECBHHHH----HHHHHHHTTC-SSEEEEEEECCT
T ss_pred HhCCCcCCCEEEeCCHHHH----HHHHHHHHhC-CCCEEEEEEcCc
Confidence 7754 56677765554 5555555554 489999987763
No 109
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=80.64 E-value=2.2 Score=43.93 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=86.2
Q ss_pred CcHHHHHHHHHHh-cCCCEEEec-CCcChHHHHHHHH-hCCCcEEecCc--hHHHHHHHHHHHhHh-CCcEEEEEcCChh
Q 011590 14 IDGNTLAAKSLSL-FGATHMFGV-VGIPVTSLANRAV-QLGVRFIAFHN--EQSAGYAASAYGYLT-GKPGILLTVSGPG 87 (482)
Q Consensus 14 ~~~~~~l~~~L~~-~Gv~~vFgv-pG~~~~~l~~al~-~~~i~~v~~~~--E~~A~~~A~g~ar~t-gk~~v~~~t~GpG 87 (482)
++-..+ ++.|.+ ..=+.++.. .|.....+...+. ....+++..+. =..+.-+|.|.+.+. .|+.+|++--|.
T Consensus 353 ~~~~~~-~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~GDG~- 430 (528)
T 1q6z_A 353 LHPETV-FDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIGDGS- 430 (528)
T ss_dssp BCHHHH-HHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEEHHH-
T ss_pred cCHHHH-HHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHhCCCCcEEEEECCcH-
Confidence 444433 444433 343444444 4555444444333 22345665443 112344677877765 466666664442
Q ss_pred hHhhHHHHHHhhhCCCcEEEEeCCCCcccC---------CC----CCCCCcCHhhhhccccceeeecCCcCcHHHHHHHH
Q 011590 88 CVHGLAGLSNGMINTWPIVMISGSCDQKDF---------GR----GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQV 154 (482)
Q Consensus 88 ~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~---------~~----~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A 154 (482)
+.-.+.+|..|...+.|+++|.-+-..... +. ..++..|...+++.+.-...++++++++ .+|
T Consensus 431 ~~~~~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l----~~a 506 (528)
T 1q6z_A 431 ANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKADNLEQL----KGS 506 (528)
T ss_dssp HTTTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEESSHHHH----HHH
T ss_pred HHhhHHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHH----HHH
Confidence 334478899998999999988855432110 00 1124467777777776556677776655 555
Q ss_pred HHHhhcCCCceEEEEcCcc
Q 011590 155 LERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 155 ~~~a~~~~~gPv~l~iP~d 173 (482)
++.+... .||+.|++..|
T Consensus 507 l~~a~~~-~gp~liev~~~ 524 (528)
T 1q6z_A 507 LQEALSA-KGPVLIEVSTV 524 (528)
T ss_dssp HHHHHTC-SSCEEEEEEBC
T ss_pred HHHHHHC-CCcEEEEEEec
Confidence 5555554 48999998765
No 110
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=79.41 E-value=3.5 Score=43.13 Aligned_cols=107 Identities=9% Similarity=0.062 Sum_probs=68.0
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc---------CC-C---CCC------
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD---------FG-R---GDF------ 122 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~---------~~-~---~~~------ 122 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|+++|.-+-.... .+ + ..+
T Consensus 431 ~l~~AiGaala~~~~~vv~i~GDGs-~~~~~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 509 (590)
T 1ybh_A 431 GLPAAIGASVANPDAIVVDIDGDGS-FIMNVQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQE 509 (590)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHHH-HHHTTTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGT
T ss_pred hHHHHHHHHHhCCCCcEEEEEccch-hhccHHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCccccccccccccc
Confidence 666788888775 467777775553 44446789999999999888775443210 00 0 001
Q ss_pred --CCcCHhhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchh
Q 011590 123 --QELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175 (482)
Q Consensus 123 --q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~ 175 (482)
...|...+++.+.-...++++++++.+.+++| ... .||+.|++..+-.
T Consensus 510 ~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a----~~~-~gp~liev~~~~~ 559 (590)
T 1ybh_A 510 DEIFPNMLLFAAACGIPAARVTKKADLREAIQTM----LDT-PGPYLLDVICPHQ 559 (590)
T ss_dssp TSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHH----HHS-SSCEEEEEECCTT
T ss_pred cCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHH----HhC-CCCEEEEEEecCC
Confidence 13577777777765666777766655555444 444 4899999887643
No 111
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=79.40 E-value=1.8 Score=45.48 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccC-C-----C---------CCCCCcCH
Q 011590 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDF-G-----R---------GDFQELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~-~-----~---------~~~q~~d~ 127 (482)
+.-+|.|.+.+.+|+.+|++--|. +.-.+..|..|...+.|+++|.-+-..... + . ...+..|.
T Consensus 460 ~l~~AiGaala~~~~vv~i~GDGs-f~~~~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~ 538 (604)
T 2x7j_A 460 VVSSAMGVCEGTKAPVTLVIGDLS-FYHDLNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDF 538 (604)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEHHH-HHHTGGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHhcCCCcEEEEEccHH-HHhHHHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCH
Confidence 455678888887888888775553 333467888899999998887754422110 0 0 11123466
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+++.+.-...+++++++ +.+|++.+... .||+.|++..|-
T Consensus 539 ~~~a~a~G~~~~~v~~~~e----l~~al~~a~~~-~gp~liev~~~~ 580 (604)
T 2x7j_A 539 KHAAALYGGTYSCPASWDE----FKTAYAPQADK-PGLHLIEIKTDR 580 (604)
T ss_dssp HHHHHHTTCEEECCSSHHH----HHHHCCCCCSS-CCEEEEEEECCH
T ss_pred HHHHHHcCCeEEecCCHHH----HHHHHHHHHhC-CCCEEEEEECCc
Confidence 6677776555667766554 45666666554 499999998763
No 112
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=79.35 E-value=8.6 Score=37.53 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=55.3
Q ss_pred CcEEEEEcCChhhHhhH---HHHHHhhhCCCcEEEEeCCCCcccCCC--CCCCCcCHhhhhccccceeeecC--CcCcHH
Q 011590 76 KPGILLTVSGPGCVHGL---AGLSNGMINTWPIVMISGSCDQKDFGR--GDFQELDQVEAVKPFSKFAVKAK--DITEVP 148 (482)
Q Consensus 76 k~~v~~~t~GpG~~N~~---~ai~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~~k~~~~~~--~~~~~~ 148 (482)
++.+|++ |=|..+.- -++..|...+.|+++|.-+-.....+. ......|....++.+.-...+++ ++.++.
T Consensus 167 ~~vv~i~--GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~ 244 (367)
T 1umd_A 167 QVAVCTF--GDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASY 244 (367)
T ss_dssp CCEEEEE--ETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHH
T ss_pred CeEEEEE--cccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHH
Confidence 4444444 55555322 258888889999999986553211100 00112344455555533344554 344567
Q ss_pred HHHHHHHHHhhcCCCceEEEEcCcc
Q 011590 149 KCVAQVLERAVSGRPGGCYLDLPTD 173 (482)
Q Consensus 149 ~~l~~A~~~a~~~~~gPv~l~iP~d 173 (482)
+.+++|++.+.... ||+.|++-.+
T Consensus 245 ~a~~~A~~~a~~~~-gP~lIe~~t~ 268 (367)
T 1umd_A 245 YVVKEAVERARRGE-GPSLVELRVY 268 (367)
T ss_dssp HHHHHHHHHHHTTC-CCEEEEEECC
T ss_pred HHHHHHHHHHHhcC-CCEEEEEEee
Confidence 77788888887764 8999998554
No 113
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=78.96 E-value=1.5 Score=45.71 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-C--------CC-----CCCCCcCH
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-F--------GR-----GDFQELDQ 127 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~--------~~-----~~~q~~d~ 127 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|++++.-+-.... . +. ..+...|.
T Consensus 441 ~l~~AiGaa~a~~~~~vv~i~GDG~-~~~~~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 519 (573)
T 2iht_A 441 GIPAAIGAQMARPDQPTFLIAGDGG-FHSNSSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDF 519 (573)
T ss_dssp HHHHHHHHHHHSTTSCEEEEEEHHH-HHHTGGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCH
T ss_pred HHHHHHHHHHhCCCCcEEEEEccHH-HHhHHHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCH
Confidence 556678888764 467777775553 44446789999999999877775443211 0 00 12233577
Q ss_pred hhhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 128 VEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 128 ~~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
..+++.+.-...++++++++. +|++.+... .||+.|++..+-
T Consensus 520 ~~~a~a~G~~~~~v~~~~~l~----~al~~a~~~-~gp~liev~~~~ 561 (573)
T 2iht_A 520 VALAEANGVDATRATNREELL----AALRKGAEL-GRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHTTCEEEECCSHHHHH----HHHHHHHTS-SSCEEEEEEBCC
T ss_pred HHHHHHcCCeEEEeCCHHHHH----HHHHHHHhC-CCCEEEEEECCC
Confidence 777887766666777665554 555555443 489999988765
No 114
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=78.65 E-value=4.3 Score=43.29 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=67.7
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----------CCC---CCCCCcCHh
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGR---GDFQELDQV 128 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----------~~~---~~~q~~d~~ 128 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+..|..|...++|+++|.-+-.... ..+ ..+...|..
T Consensus 518 ~lpaAiGaalA~p~~~Vv~i~GDGs-f~~~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~ 596 (677)
T 1t9b_A 518 GLPAAIGAQVAKPESLVIDIDGDAS-FNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFI 596 (677)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEHHH-HHHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHH
T ss_pred hHHHHHHHHHhCCCCeEEEEEeehH-HhccHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHH
Confidence 556677887764 466666654443 33345678889999999887775543211 010 012345777
Q ss_pred hhhccccceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 129 ~~~~~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+++.+.-...++++++++.+.+++|+ .. .||+.|++..|-
T Consensus 597 ~la~a~G~~~~~v~~~~el~~al~~a~----~~-~gp~lIev~~~~ 637 (677)
T 1t9b_A 597 KLAEAMGLKGLRVKKQEELDAKLKEFV----ST-KGPVLLEVEVDK 637 (677)
T ss_dssp HHHHHTTCEEEEECSHHHHHHHHHHHH----HC-SSCEEEEEEBCS
T ss_pred HHHHHcCCeEEEECCHHHHHHHHHHHH----HC-CCcEEEEEEecC
Confidence 788887666778877766655555554 43 489999998774
No 115
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=75.41 E-value=1.7 Score=45.20 Aligned_cols=107 Identities=10% Similarity=0.096 Sum_probs=63.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-CC---C---CCCCCcCHhhhhccc
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-FG---R---GDFQELDQVEAVKPF 134 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-~~---~---~~~q~~d~~~~~~~~ 134 (482)
+.-+|.|.+.+. +++.+|++--|. +.-.+.+|..|...+.|+++|.-+-.... .+ . ...+..|...+++.+
T Consensus 414 ~l~~A~G~ala~~~~~vv~~~GDG~-~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~ 492 (566)
T 2vbi_A 414 SVPSAFGNAMGSQDRQHVVMVGDGS-FQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVF 492 (566)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEEcchH-HHhhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHc
Confidence 445577777764 466666664443 33345688888889999887775443211 00 0 112334656666666
Q ss_pred cc-----eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 135 SK-----FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 135 ~k-----~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.- ...++++++++.+.+++| .....||+.|++..+-
T Consensus 493 G~~~~~~~~~~v~~~~el~~al~~a----~~~~~gp~liev~~~~ 533 (566)
T 2vbi_A 493 NAGEGHGLGLKATTPKELTEAIARA----KANTRGPTLIECQIDR 533 (566)
T ss_dssp HTTTCCCEEEEECSHHHHHHHHHHH----HHCCSSCEEEEEECCT
T ss_pred CCCCCCccEEEeCCHHHHHHHHHHH----HhcCCCcEEEEEEeCc
Confidence 44 566777766655555544 4432489999987763
No 116
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=74.48 E-value=2.5 Score=44.08 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc----CCC---CCCCCcCHhhhhccc
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----FGR---GDFQELDQVEAVKPF 134 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~----~~~---~~~q~~d~~~~~~~~ 134 (482)
+.-+|.|.+.+. +++.++++--|. +.-.+..|..|...+.|++++.-+-.... ... ...+..|...+++.+
T Consensus 418 ~l~~A~G~ala~~~~~vv~i~GDGs-~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~ 496 (568)
T 2wvg_A 418 SVPAAFGYAVGAPERRNILMVGDGS-FQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVF 496 (568)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcEEEEEcChh-HhccHHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHHHHh
Confidence 445677877764 567676665443 44446778888889999877775432211 001 122334666676666
Q ss_pred cc---------eeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 135 SK---------FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 135 ~k---------~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.- ...++++.+++.+.+++|+ ....||+.|++..+-
T Consensus 497 G~~~~~~~~~~~~~~v~~~~el~~al~~a~----~~~~gp~liev~~~~ 541 (568)
T 2wvg_A 497 NGNGGYDSGAGKGLKAKTGGELAEAIKVAL----ANTDGPTLIECFIGR 541 (568)
T ss_dssp HCTTSSSCCCCEEEEESBHHHHHHHHHHHH----HCCSSCEEEEEECCT
T ss_pred CCCcccccCCcceEEeCCHHHHHHHHHHHH----hcCCCcEEEEEEcCc
Confidence 44 5667777666555555554 332489999987763
No 117
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=74.45 E-value=3.3 Score=43.09 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHh-hHHHHHHhhhCCCcEEEEeCCCCcc-cC----CC---CCCCCcCHhhhhc
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVH-GLAGLSNGMINTWPIVMISGSCDQK-DF----GR---GDFQELDQVEAVK 132 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N-~~~ai~~A~~~~~Pvl~i~g~~~~~-~~----~~---~~~q~~d~~~~~~ 132 (482)
+.-+|.|.+.+. +++.+|++ |=|... .+.+|..|...+.|++++.-+-... .. .. ..++..|...+++
T Consensus 427 ~l~~A~G~ala~~~~~vv~i~--GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 504 (565)
T 2nxw_A 427 GVPAGIGAQCVSGGKRILTVV--GDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAA 504 (565)
T ss_dssp HHHHHHHHHHHTTTCCEEEEE--EHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTG
T ss_pred cchHHHHHHHhCCCCcEEEEE--echHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHH
Confidence 344577877764 56766666 444433 2356777788899987777544321 10 00 1234457777888
Q ss_pred cccceeeecCCcCcHHHHHHHHHHHhhcCCCceE-EEEcCcc
Q 011590 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGC-YLDLPTD 173 (482)
Q Consensus 133 ~~~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv-~l~iP~d 173 (482)
.+.-...++++++++.+.+++| ... .||+ .|++..|
T Consensus 505 a~G~~~~~v~~~~el~~al~~a----~~~-~gp~~liev~~~ 541 (565)
T 2nxw_A 505 GMGGDGVRVRTRAELKAALDKA----FAT-RGRFQLIEAMIP 541 (565)
T ss_dssp GGTSEEEEECBHHHHHHHHHHH----HHC-CSSCEEEEEECC
T ss_pred HcCCCEEEeCCHHHHHHHHHHH----Hhc-CCCeEEEEEEcc
Confidence 8766677787766655555444 443 3787 8888766
No 118
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=72.06 E-value=6.8 Score=40.70 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=63.9
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CCC----CCCCCcCHhhhhc
Q 011590 63 AGYAASAYGYLT-GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FGR----GDFQELDQVEAVK 132 (482)
Q Consensus 63 A~~~A~g~ar~t-gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~~----~~~q~~d~~~~~~ 132 (482)
+.-+|.|.+.+. +|+.+|++--|. +.-.+..|..|...+.|+++|.-+-.... .+. ...+..|...+++
T Consensus 430 ~l~~A~Gaala~~~~~vv~~~GDG~-~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 508 (570)
T 2vbf_A 430 TFPAALGSQIADKESRHLLFIGDGS-LQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLPE 508 (570)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHH
T ss_pred hHHHHHHHHHhCCCCcEEEEEcchh-hhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHHH
Confidence 445577777765 467777665443 33345788889999999888776443221 110 1123356666666
Q ss_pred cccce-----eeecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcch
Q 011590 133 PFSKF-----AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 133 ~~~k~-----~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv 174 (482)
.+.-. ..++++++++.+.+++| +... .||+.|++..+-
T Consensus 509 a~G~~~~~~~~~~v~~~~el~~al~~a---~~~~-~~p~liev~~~~ 551 (570)
T 2vbf_A 509 TFGATEDRVVSKIVRTENEFVSVMKEA---QADV-NRMYWIELVLEK 551 (570)
T ss_dssp HTTCCTTTEEEEEECBHHHHHHHHHHH---HHCT-TSEEEEEEECCT
T ss_pred HcCCCcCCcceEEecCHHHHHHHHHHH---HhcC-CCcEEEEEEcCc
Confidence 65332 67777665554444443 2343 489999988763
No 119
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=70.40 E-value=6.5 Score=33.52 Aligned_cols=113 Identities=10% Similarity=0.150 Sum_probs=62.6
Q ss_pred CCCEEEEcCCcccccc-H---HHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc----hHHHHhhhcCCEEEEe-----c
Q 011590 219 KKPLIVFGKGAAYARA-E---GELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT----AARSLAIGQCDVALVV-----G 285 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~-~---~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G----~~~~~~l~~aDlvl~i-----G 285 (482)
-|..+++|+..=..+. . +.+.+++++.|..|+. + .++..--. ......+++||+||++ |
T Consensus 9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~-P-------~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g 80 (161)
T 2f62_A 9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI-P-------TDNEATEALDIRQKNIQMIKDCDAVIADLSPFRG 80 (161)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC-T-------TTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSS
T ss_pred hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC-C-------CccCcchHHHHHHHHHHHHHhCCEEEEEecCCCC
Confidence 3667788877644444 3 4567777777877654 2 22221111 1123678999999999 4
Q ss_pred CccCccccc--CCCCCCCCCCcEEEEeCCchh------------------hc----cc-CCceeEeccHHHHHHHHHHhh
Q 011590 286 ARLNWLLHF--GEPPKWSKDVKFVLVDVCKEE------------------IE----LR-KPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 286 ~~~~~~~~~--g~~~~~~~~~~ii~id~d~~~------------------~~----~~-~~~~~i~~D~~~~l~~L~~~l 340 (482)
...++-+.+ |+. +..++++|-+..|... ++ .. .-.+.+..|.+++|+.|.+.+
T Consensus 81 ~~~D~GTafEiGyA--~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~NLMl~~~~~~~~~~~~~l~~l~~~~ 158 (161)
T 2f62_A 81 HEPDCGTAFEVGCA--AALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFNLMLYDGVEVFDSFESAFKYFLANF 158 (161)
T ss_dssp SSCCHHHHHHHHHH--HHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSCGGGCCSSCEESSHHHHHHHHHHHS
T ss_pred CCCCCcHHHHHHHH--HHCCCEEEEEEcCchhhhhhcccccccccccccccCCcchhhhhhhheeeCCHHHHHHHHHHhh
Confidence 333321100 111 1356677777766321 11 11 112337889999998888775
Q ss_pred h
Q 011590 341 K 341 (482)
Q Consensus 341 ~ 341 (482)
.
T Consensus 159 ~ 159 (161)
T 2f62_A 159 P 159 (161)
T ss_dssp C
T ss_pred c
Confidence 4
No 120
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=68.89 E-value=37 Score=29.65 Aligned_cols=101 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHH--HHHHHH------hCCCcEEecCchHHHHHH---HHHH----H----hHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAV------QLGVRFIAFHNEQSAGYA---ASAY----G----YLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~------~~~i~~v~~~~E~~A~~~---A~g~----a----r~tg 75 (482)
...+.|++.|++.|-=++||+-++.... +...|. +.++..+....+...-.+ ..|| + ...+
T Consensus 34 ~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~~ 113 (201)
T 3trj_A 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALGN 113 (201)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhCC
Confidence 4677788888888999999998776543 333343 357777665533221110 0111 1 1123
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCCcc
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQK 115 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~~~ 115 (482)
+--++++.|..| ..+.+.++..|+..++|+|.||+.....
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 333555555555 5667788888999999999999976443
No 121
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=67.98 E-value=6.2 Score=40.94 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=62.4
Q ss_pred HHHHHHHHhHh-C----CcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCccc-----CCC----CCCCCcCHhh
Q 011590 64 GYAASAYGYLT-G----KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD-----FGR----GDFQELDQVE 129 (482)
Q Consensus 64 ~~~A~g~ar~t-g----k~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~-----~~~----~~~q~~d~~~ 129 (482)
.-+|.|.+.+. . ++.+|++--|. +.-.+..+..|...+.|++++.-+-.... .+. ..++..|...
T Consensus 419 l~~A~Gaala~~~~~~~~~vv~~~GDG~-~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ 497 (563)
T 2vk8_A 419 TGATLGAAFAAEEIDPKKRVILFIGDGS-LQLTVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLS 497 (563)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEHHH-HHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGG
T ss_pred HHHHHHHHHhCcccCCCCCEEEEEcchH-hhccHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHH
Confidence 34566666543 2 66666664443 33346788889999999888885443211 111 1123346666
Q ss_pred hhccccce---eeecCCcCcHHHHHHHHHH-HhhcCCCceEEEEcCcch
Q 011590 130 AVKPFSKF---AVKAKDITEVPKCVAQVLE-RAVSGRPGGCYLDLPTDV 174 (482)
Q Consensus 130 ~~~~~~k~---~~~~~~~~~~~~~l~~A~~-~a~~~~~gPv~l~iP~dv 174 (482)
+++.+.-. ..+++++++ +.+|++ .+.....||+.|++..|-
T Consensus 498 ~a~a~G~~~~~~~~v~~~~e----l~~al~~~a~~~~~~p~liev~~~~ 542 (563)
T 2vk8_A 498 LLPTFGAKDYETHRVATTGE----WDKLTQDKSFNDNSKIRMIEVMLPV 542 (563)
T ss_dssp HHHHTTCSSEEEEEECBHHH----HHHHHTCTTTTSCSSEEEEEEECCT
T ss_pred HHHHhCCCCCcEEEecCHHH----HHHHHHHHHHhCCCCcEEEEEEeCc
Confidence 66666433 667776544 456666 555433379999988773
No 122
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=67.71 E-value=7.7 Score=30.51 Aligned_cols=96 Identities=18% Similarity=0.109 Sum_probs=60.1
Q ss_pred CEEE--EcCCcccc-ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCcc-CcccccCC
Q 011590 221 PLIV--FGKGAAYA-RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARL-NWLLHFGE 296 (482)
Q Consensus 221 pvil--~G~g~~~~-~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~-~~~~~~g~ 296 (482)
.+.+ ++.|+..+ -+.+.|++.|+++|+.+-....|..=+ .++ ...+-+++||+||+..-.- .+...
T Consensus 5 ivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~--~n~-----Lt~~~I~~AD~VIia~d~~v~~~~R--- 74 (106)
T 2m1z_A 5 IIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGI--ENE-----LTEKDVNIGEVVIFAVDTKVRNKER--- 74 (106)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEE--SSC-----CCHHHHHHCSEEEEEESSCCSTHHH---
T ss_pred EEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccc--cCC-----CCHHHHhhCCEEEEeccccccchhc---
Confidence 3445 46676655 568899999999999987665543101 111 1235678999999886422 11111
Q ss_pred CCCCCCCCcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhhh
Q 011590 297 PPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK 341 (482)
Q Consensus 297 ~~~~~~~~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (482)
| .+.++++++... ...|++.+|++..+.++
T Consensus 75 ---F-~gk~v~~~~v~~-----------~i~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 75 ---F-DGKVVLEVPVSA-----------PIKDAEKVINAALALID 104 (106)
T ss_dssp ---H-TTSEEEEECTTH-----------HHHCHHHHHHHHHHHHT
T ss_pred ---c-CCCcEEEEcHHH-----------HHHCHHHHHHHHHHHHh
Confidence 2 256888887753 23577788877776654
No 123
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=66.52 E-value=50 Score=30.19 Aligned_cols=150 Identities=6% Similarity=-0.042 Sum_probs=75.7
Q ss_pred CcHHHHHHHHHHhcC--CCEEEecCCc--------ChHHHHHHHHhCCCcEEecC--chHHHHH-HHHHHHhHhCCcEEE
Q 011590 14 IDGNTLAAKSLSLFG--ATHMFGVVGI--------PVTSLANRAVQLGVRFIAFH--NEQSAGY-AASAYGYLTGKPGIL 80 (482)
Q Consensus 14 ~~~~~~l~~~L~~~G--v~~vFgvpG~--------~~~~l~~al~~~~i~~v~~~--~E~~A~~-~A~g~ar~tgk~~v~ 80 (482)
..++..+++.|.+.| -+.+..+-|. ....+.+++.+.+++++... .....+. ++..+-+...++-++
T Consensus 113 ~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 192 (297)
T 3rot_A 113 LLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNII 192 (297)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEE
Confidence 357889999999999 7776666443 23345666777788776432 2222222 222222234567888
Q ss_pred EEcCChhhHhhHHHHHHhhh----CCCcEEEEeCCCCcccCCCCCCCCcCHhhh-hccccceeeecCCcCcHH-HHHHHH
Q 011590 81 LTVSGPGCVHGLAGLSNGMI----NTWPIVMISGSCDQKDFGRGDFQELDQVEA-VKPFSKFAVKAKDITEVP-KCVAQV 154 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~~----~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~-~~~~~k~~~~~~~~~~~~-~~l~~A 154 (482)
++.+...+..++.++.++-. ..+.|+-+-+.. ..... .......+. -.++.++- ..++..
T Consensus 193 ~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~~-------------~~~~~i~~~~~lttv-~~~~~~~g~~av~~l 258 (297)
T 3rot_A 193 FCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKTP-------------NTVSLIHKKLVNYVM-DQQPFLMGYLSITQL 258 (297)
T ss_dssp EESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCCH-------------HHHHHHHTTSCCEEE-CCCHHHHHHHHHHHH
T ss_pred EEcCCcchHHHHHHHHhcCCccCCCceEEEEeCCCH-------------HHHHHHHcCCceEEE-ecChHHHHHHHHHHH
Confidence 88887766767777776655 344444332211 01111 211111111 22333333 333333
Q ss_pred HHHhhcCCCceEEEEcCcchhccc
Q 011590 155 LERAVSGRPGGCYLDLPTDVLHQT 178 (482)
Q Consensus 155 ~~~a~~~~~gPv~l~iP~dv~~~~ 178 (482)
++.. .++..|-++.+|.++...+
T Consensus 259 ~~~i-~g~~~~~~i~~~~~~~~~~ 281 (297)
T 3rot_A 259 VLMN-RYQLNPVNINTAMAENLYF 281 (297)
T ss_dssp HHHH-HHCCCCCCEECCC------
T ss_pred HHHH-hCCCCCcccccCceEEecc
Confidence 3333 3445688899999887655
No 124
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=66.14 E-value=31 Score=37.70 Aligned_cols=122 Identities=9% Similarity=-0.026 Sum_probs=75.3
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHhCCcEE-EEEcCChhhHh-h---H----HHHHHhhhCCCcEEEEeCCCCcccCCCCC
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGI-LLTVSGPGCVH-G---L----AGLSNGMINTWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~tgk~~v-~~~t~GpG~~N-~---~----~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~ 121 (482)
.+++. .-.|+++..+|.||+...-++-+ +-.+.|. +.| + + +....-|..++||+++..... .|.|.
T Consensus 584 ~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~d-F~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~---~G~Gp 659 (868)
T 2yic_A 584 FLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD-FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH---EGQGP 659 (868)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGG-GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC---SSSCT
T ss_pred cEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHH-HHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC---CCCCh
Confidence 45653 47899999999999998655544 3344443 333 2 1 222112456899888876443 24443
Q ss_pred -CCCcCHhhhh--ccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccccC
Q 011590 122 -FQELDQVEAV--KPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180 (482)
Q Consensus 122 -~q~~d~~~~~--~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~ 180 (482)
|+......++ +.+-.+... +.++.++..+|++++. ..-++|+++.-|..++....+
T Consensus 660 ~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lLr~a~~---~~~~~Pvii~~pk~llR~~~~ 719 (868)
T 2yic_A 660 DHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGK---DGIQRPLIVFTPKSMLRNKAA 719 (868)
T ss_dssp TSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGGCTTS
T ss_pred hhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHHHHHHh---cCCCCcEEEEechHHhCCCCC
Confidence 4444344555 655555544 4567788777777664 222489999999998766543
No 125
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=64.59 E-value=15 Score=29.01 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=56.8
Q ss_pred cCCcccc-ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccC-cccccCCCCCCCCC
Q 011590 226 GKGAAYA-RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLN-WLLHFGEPPKWSKD 303 (482)
Q Consensus 226 G~g~~~~-~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~-~~~~~g~~~~~~~~ 303 (482)
..|+... -+.+.|.+-|+++|+.+-....|..=+ .++ ...+-+++||+||+.+.... .... | .+
T Consensus 15 ptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~--~n~-----Lt~~~I~~Ad~VIiA~d~~v~~~~R------F-~G 80 (111)
T 2kyr_A 15 PMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGI--QNR-----LTAQDIAEATIIIHSVAVTPEDNER------F-ES 80 (111)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEE--ESC-----CCHHHHHHCSEEEEEESSCCTTGGG------G-TT
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCc--CCC-----CCHHHHHhCCEEEEEeCCCcCchhh------c-CC
Confidence 3444433 678899999999999987765543111 111 12357889999999985443 2222 2 35
Q ss_pred CcEEEEeCCchhhcccCCceeEeccHHHHHHHHHHhh
Q 011590 304 VKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340 (482)
Q Consensus 304 ~~ii~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (482)
.++++++++. ...|++.+|++..+.+
T Consensus 81 K~v~~~~v~~-----------ai~~p~~~l~~a~~~~ 106 (111)
T 2kyr_A 81 RDVYEITLQD-----------AIKNAAGIIKEIEEMI 106 (111)
T ss_dssp SCEEEEETTH-----------HHHSHHHHHHHHHHHH
T ss_pred CeEEEeCHHH-----------HHHCHHHHHHHHHHHH
Confidence 6888888754 2356777777665544
No 126
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=64.06 E-value=34 Score=38.55 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=76.5
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHhCCcEEEE-EcCChhhHhhH--------HHHHHhhhCCCcEEEEeCCCCcccCCCCC
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLTGKPGILL-TVSGPGCVHGL--------AGLSNGMINTWPIVMISGSCDQKDFGRGD 121 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~tgk~~v~~-~t~GpG~~N~~--------~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~ 121 (482)
.+++. .-.|+++..+|.||+...-++-++. .+.|. +.|.- +....-|..++||+++..... .|.|.
T Consensus 829 ~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~d-F~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~---~G~G~ 904 (1113)
T 2xt6_A 829 FLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD-FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH---EGQGP 904 (1113)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGG-GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC---SSSCT
T ss_pred cEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHH-HHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC---CCCCh
Confidence 45553 4689999999999999866654433 34443 33321 222112456899999886443 24443
Q ss_pred -CCCcCHhhhh--ccccceeee-cCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccccC
Q 011590 122 -FQELDQVEAV--KPFSKFAVK-AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS 180 (482)
Q Consensus 122 -~q~~d~~~~~--~~~~k~~~~-~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~ 180 (482)
|+......++ +.+-.+... +.++.++..+|++++. ..-++|+++.-|..++.....
T Consensus 905 ~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lLr~a~~---~~~~~Pvii~~pk~L~R~~~~ 964 (1113)
T 2xt6_A 905 DHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGK---DGIQRPLIVFTPKSMLRNKAA 964 (1113)
T ss_dssp TSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGSCSSS
T ss_pred hhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHHHHHHh---ccCCCCEEEEechHHhCCCCC
Confidence 5554345555 655555544 4577888888877764 222489999999998766543
No 127
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=63.28 E-value=4.7 Score=31.72 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLN 289 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~ 289 (482)
+|.++++|.|...|-..+.+.+.++..|+++-....+-+- ....+.++|+++ +|..+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~------------~~~~~~~~Dvil-~~pqv~ 61 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL------------AGEKGQNADVVL-LGPQIA 61 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS------------TTHHHHHCSEEE-ECTTSG
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH------------HHhhccCCCEEE-Eccchh
Confidence 5789999999988877889999999999986433222111 112457899666 666554
No 128
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=62.72 E-value=33 Score=32.14 Aligned_cols=72 Identities=11% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEe
Q 011590 207 DIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (482)
Q Consensus 207 ~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (482)
.+..+++.|...+ .-++++|.. ..+.+.+.++|++.|+..++...-.|.|.+..- ..++..|+||++
T Consensus 61 ~L~~Aa~~I~~i~~~~~ILfVgTk---~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t--------~~f~ePdllvV~ 129 (305)
T 3iz6_A 61 KLQLAARVIVAIENPQDIIVQSAR---PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ--------TSFSEPRLLILT 129 (305)
T ss_dssp HHHHHHHHHHHTTSSCCEEEECCS---HHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTT--------SCSSCCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCc---HHHHHHHHHHHHHhCCccccCcccCCcccCccc--------ccccCCceeEEe
Confidence 4556666666543 347888865 356788999999999998877665576655322 124789999999
Q ss_pred cCccC
Q 011590 285 GARLN 289 (482)
Q Consensus 285 G~~~~ 289 (482)
..+-+
T Consensus 130 Dp~~d 134 (305)
T 3iz6_A 130 DPRTD 134 (305)
T ss_dssp CTTTT
T ss_pred Ccccc
Confidence 86654
No 129
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=62.43 E-value=1.5 Score=40.86 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCCEEEecCCcChHH-HH-HHHHhCCCcEEecC----------chH-HHHHHHHHHHhHhCCcEEEEEcC
Q 011590 18 TLAAKSLSLFGATHMFGVVGIPVTS-LA-NRAVQLGVRFIAFH----------NEQ-SAGYAASAYGYLTGKPGILLTVS 84 (482)
Q Consensus 18 ~~l~~~L~~~Gv~~vFgvpG~~~~~-l~-~al~~~~i~~v~~~----------~E~-~A~~~A~g~ar~tgk~~v~~~t~ 84 (482)
.+.++-+.+.|.+.|.-+=++..+. |+ +.| +...++|.-. +|. .++++ .||--..|..++ +.|+
T Consensus 40 nAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L-~~ra~li~G~prp~~Mm~Gld~sfD~v~f-iGYHa~AG~~gv-LaHT 116 (274)
T 1hi9_A 40 NYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKL-HPEADLISGDVKPFSMVEGLDDTFRGALF-LGYHARASTPGV-MSHS 116 (274)
T ss_dssp HHHHHHHHHTTCSEEEEEECSTTSCCSCTTTS-CTTSEEEEESCCTTGGGTTCCTTCSEEEE-EEECCCTTSSST-TCCS
T ss_pred HHHHHHHHHCCCeEEEEEccCCCcCCcChhHC-CcCeEEEeCCCCCcchhccccCCccEEEE-eecCCCCCCCCc-cCCC
Confidence 4557888899999998876654331 21 222 2345555432 222 22222 343322233333 3444
Q ss_pred Chh--hHh----------hHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhhccccceeeecCCcCcHHHHHH
Q 011590 85 GPG--CVH----------GLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVA 152 (482)
Q Consensus 85 GpG--~~N----------~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~~k~~~~~~~~~~~~~~l~ 152 (482)
-+ ..+ ..-.-+-|-.-++||++++|+.......+.-+.++.....-+.+..++..-.+|+.+.+.|+
T Consensus 117 -~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGDd~~~~e~~~~~P~~~tv~vK~~~gr~aa~~~~p~~a~~~I~ 195 (274)
T 1hi9_A 117 -MIFGVRHFYINDRPVGELGLNAYVAGYYDVPVLMVAGDDRAAKEAEELIPNVTTAAVKQTISRSAVKCLSPAKRGRLLT 195 (274)
T ss_dssp -SSTTEEEEEETTEEECHHHHHHHHHHHTTCCEEEEEEEHHHHHHHHTTSTTCEEEEEEEEEETTEEEECCHHHHHHHHH
T ss_pred -CccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHHhCCCCeEEEEeecccccccccCCHHHHHHHHH
Confidence 22 111 22233345667999999999865432222222223333334556778888889999999999
Q ss_pred HHHHHhhcC
Q 011590 153 QVLERAVSG 161 (482)
Q Consensus 153 ~A~~~a~~~ 161 (482)
++.+.|+..
T Consensus 196 ~aa~~Al~~ 204 (274)
T 1hi9_A 196 EKTAFALQN 204 (274)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhh
Confidence 999988853
No 130
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=61.42 E-value=34 Score=29.11 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHH--H------HhCCCcEEecCchHHHHH-----------HHHHHHhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANR--A------VQLGVRFIAFHNEQSAGY-----------AASAYGYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~a--l------~~~~i~~v~~~~E~~A~~-----------~A~g~ar~tg 75 (482)
..++.+++.|.+.+-=++||+-++......-+ | .+.+++.+....+.+-.. +..-+...-+
T Consensus 30 ~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (188)
T 1tk9_A 30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN 109 (188)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCC
Confidence 35566667777788777888866654333222 2 123555554432222110 0111122123
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCC
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSC 112 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~ 112 (482)
+--++++.|..| ..+.+.++..|+..+.|++.||+..
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 334455555555 5567778888999999999999864
No 131
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=58.46 E-value=43 Score=28.77 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHH--HHHHHH------hCCCcEEecCchHHHH-----------HHHHHHHhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTS--LANRAV------QLGVRFIAFHNEQSAG-----------YAASAYGYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~------~~~i~~v~~~~E~~A~-----------~~A~g~ar~tg 75 (482)
...+.+++.|.+.+-=++||+-++.... +...+. +.|+..+....+.+.. ..+.-.....+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 3457788889888877888887665432 223344 3466666554221110 00000011122
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCCc
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
+--++++.|..| ..+.+.++..|+..++++|.||+....
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 333455555554 567778888899999999999997643
No 132
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=57.04 E-value=32 Score=31.24 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCC--CEEEEcCCccccccHHHHHHHHHHhCCcEe-eCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 206 SDIDKAVSLLKEAKK--PLIVFGKGAAYARAEGELKKLVESTGIPFL-PTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 206 ~~~~~~~~~L~~a~r--pvil~G~g~~~~~~~~~l~~lae~~g~pv~-~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
..++.+++.+...++ -++++|.. ..+.+.+.++|++.|++.+ +...-.|.+..-.- ......|+|+
T Consensus 51 ~~L~~A~~~i~~i~~~~~iLfVgtk---~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t--------~~~~~Pdlli 119 (241)
T 2xzm_B 51 QKIKLAARVIAAVQHPEDVMVVCSR---IYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQT--------LKYEEPRVLI 119 (241)
T ss_dssp HHHHHHHHHHHHCSSGGGEEEECCS---HHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTC--------TTCCCCSEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECC---HHHHHHHHHHHHHhCCEEeccccccCCcccCccc--------cccCCCCEEE
Confidence 346667777776543 47888864 3467789999999999877 65444565544321 2346799999
Q ss_pred EecCccC
Q 011590 283 VVGARLN 289 (482)
Q Consensus 283 ~iG~~~~ 289 (482)
++..+-+
T Consensus 120 V~Dp~~e 126 (241)
T 2xzm_B 120 VTDPRSD 126 (241)
T ss_dssp ESCTTTT
T ss_pred EECCCcc
Confidence 9986543
No 133
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=56.92 E-value=30 Score=31.61 Aligned_cols=72 Identities=10% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEe
Q 011590 207 DIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (482)
Q Consensus 207 ~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (482)
.+..+++.|.... .-++++|.. ..+.+.+.++|++.|++.++...-.|.|....- ..++..|+|+++
T Consensus 56 ~L~~A~~~i~~i~~~~~vlfVgTk---~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t--------~~f~~PdllvV~ 124 (252)
T 3u5c_A 56 KLVLAARIIAAIPNPEDVVAISSR---TFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT--------RSFKEPRLVIVT 124 (252)
T ss_dssp HHHHHHHHHTTSSSGGGEEEEECS---HHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS--------TTCCCCSEEEES
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCC---cHHHHHHHHHHHHhCCceecCcccCCcccChhh--------hhccCCceEEEe
Confidence 3555666665543 347788765 356788999999999998887666676655322 235789999999
Q ss_pred cCccC
Q 011590 285 GARLN 289 (482)
Q Consensus 285 G~~~~ 289 (482)
..+-+
T Consensus 125 Dp~~d 129 (252)
T 3u5c_A 125 DPRSD 129 (252)
T ss_dssp CTTTT
T ss_pred CCccc
Confidence 87654
No 134
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=54.95 E-value=28 Score=30.13 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHH--HHHHH------HhCCCcEEecCchHHHHHHHH----HHH--------hHhC
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTS--LANRA------VQLGVRFIAFHNEQSAGYAAS----AYG--------YLTG 75 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al------~~~~i~~v~~~~E~~A~~~A~----g~a--------r~tg 75 (482)
..+.+++.|.+.+-=++||+-++.... +...+ .+.|+..+...... ..+.|. ++. ..-+
T Consensus 34 ~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 112 (199)
T 1x92_A 34 ASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDS-STITSIANDYSYNEVFSKQIRALGQ 112 (199)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCH-HHHHHHHHHTCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCCh-hHHHHhhcCccHHHHHHHHHHhCCC
Confidence 556667888888766777776654332 33334 23456665543211 111111 111 1123
Q ss_pred CcEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCC
Q 011590 76 KPGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSC 112 (482)
Q Consensus 76 k~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~ 112 (482)
+--++++.|..| ..+.+.++..|+..++|+|.||+..
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 333555555555 5677788888999999999999875
No 135
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=54.48 E-value=22 Score=38.49 Aligned_cols=79 Identities=22% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 205 NSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
+++++.+++.|++.+ ...++.|+.. .....-.+.+|++.+|.+.+... ++...... . +.+ ....-+++||+||
T Consensus 323 deAl~~ia~~L~~i~~~~i~~~~s~~~-t~E~~~~~~kl~~~lGt~n~d~~-~~~~~~~~-~-~~~-~~~~di~~ad~Il 397 (783)
T 3i9v_3 323 EEAFLALKEGLKEARGEEVGLYLAHDA-TLEEGLLASELAKALKTPHLDFQ-GRTAAPAS-L-FPP-ASLEDLLQADFAL 397 (783)
T ss_dssp HHHHHHHHHHHHTCCTTSEEEEECTTC-CTTHHHHHHHHHHHTTCSCEEET-TCCSSCGG-G-SCB-CCHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHhhccCCEEEEECCCC-CHHHHHHHHHHHHHhCCCcccCC-chhhhhhc-c-CCC-CCHHHHhhCCEEE
Confidence 567888888888764 3445554443 22344568999999998876543 22111000 0 111 1123467999999
Q ss_pred EecCccC
Q 011590 283 VVGARLN 289 (482)
Q Consensus 283 ~iG~~~~ 289 (482)
++| ++.
T Consensus 398 ~~G-Np~ 403 (783)
T 3i9v_3 398 VLG-DPT 403 (783)
T ss_dssp EES-CHH
T ss_pred EeC-Chh
Confidence 999 764
No 136
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=52.96 E-value=18 Score=28.32 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeC
Q 011590 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDV 311 (482)
Q Consensus 232 ~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~ 311 (482)
.-+.+.|.+-|+++|+.+-....|..=+ .++ ...+-+++||+||+.+....+... | .+.+++++++
T Consensus 19 ymAaeaL~~aA~~~G~~ikVEtqGs~G~--~n~-----Lt~~~I~~Ad~VIiA~d~~v~~~R------F-~GK~v~~~~v 84 (106)
T 2r48_A 19 YMAAENLQKAADRLGVSIKVETQGGIGV--ENK-----LTEEEIREADAIIIAADRSVNKDR------F-IGKKLLSVGV 84 (106)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEETTEE--ESC-----CCHHHHHHCSEEEEEESSCCCCGG------G-TTSBEEEECH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCc--cCC-----CCHHHHHhCCEEEEEeCCccCHhH------c-CCCeEEEeCH
Confidence 3678899999999999987765553211 111 123578899999999865433222 2 3568877766
Q ss_pred CchhhcccCCceeEeccHHHHHHHHHH
Q 011590 312 CKEEIELRKPHLGLVGDAKKVLEMINK 338 (482)
Q Consensus 312 d~~~~~~~~~~~~i~~D~~~~l~~L~~ 338 (482)
+. ...|++.+|++..+
T Consensus 85 ~~-----------ai~~p~~~l~~a~~ 100 (106)
T 2r48_A 85 QD-----------GIRKPEELIQKALN 100 (106)
T ss_dssp HH-----------HHHCHHHHHHHHHH
T ss_pred HH-----------HHHCHHHHHHHHHh
Confidence 42 23466666666443
No 137
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=52.88 E-value=65 Score=27.27 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChHH--HHHHHHhCCCcEEecC---chHHHHHHHHHHHhHhCCcEEEEEcCChh-hHh
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFH---NEQSAGYAASAYGYLTGKPGILLTVSGPG-CVH 90 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~~~~i~~v~~~---~E~~A~~~A~g~ar~tgk~~v~~~t~GpG-~~N 90 (482)
-+.+++.|.+..-=++||+-++.... +...|.+-|+.+.... ++.. .-.... ++--++++.|..| ..+
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~-----~~~~~~-~~~d~~i~iS~sG~t~~ 102 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLT-----ITLANL-RPTDLMIGVSVWRYLRD 102 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHH-----HHHHTC-CTTEEEEEECCSSCCHH
T ss_pred HHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHH-----HHHhcC-CCCCEEEEEeCCCCCHH
Confidence 45678888888766667765554332 2333445676665544 2321 112233 3334556666666 456
Q ss_pred hHHHHHHhhhCCCcEEEEeCCCC
Q 011590 91 GLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
.+.++..|+..++|+|.||+...
T Consensus 103 ~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 103 TVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp HHHHHHHHHHTTCCEEEEESCTT
T ss_pred HHHHHHHHHHCCCCEEEEeCCCC
Confidence 66788889999999999998763
No 138
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=52.83 E-value=13 Score=29.31 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecC
Q 011590 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGA 286 (482)
Q Consensus 218 a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~ 286 (482)
..|.+++++.|...+-..+.+++.|+..|+++-....+-+.+. ..+.+.|+||+ |-
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~------------~~~~~~DvvLL-gP 61 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY------------DIMGVYDLIIL-AP 61 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT------------TTGGGCSEEEE-CG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH------------hhccCCCEEEE-Ch
Confidence 3467899999987667778899999999999765332222121 24467898765 53
No 139
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=52.23 E-value=21 Score=31.02 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
.+++.+++++++|.++++-++++|.|... .....+.....++|.++..-... +... .....+.+-|++|
T Consensus 29 l~~~~i~~~~~~i~~a~~~I~i~G~G~S~-~~A~~~~~~l~~~g~~~~~~~~~-------~~~~---~~~~~~~~~dvvI 97 (201)
T 3fxa_A 29 TSEEALVKTVEKIAECTGKIVVAGCGTSG-VAAKKLVHSFNCIERPAVFLTPS-------DAVH---GTLGVLQKEDILI 97 (201)
T ss_dssp SCHHHHHHHHHHHHHCSSCEEEECCTHHH-HHHHHHHHHHHHTTCCEEECCHH-------HHTT---TGGGGCCTTCEEE
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEecHHH-HHHHHHHHHHHhcCCcEEEeCch-------HHHh---hhhhcCCCCCEEE
Confidence 35688999999999997789999998742 33445555555688888753211 1000 0112356779999
Q ss_pred EecCccCcccccCCCCCC-CCCCcEEEEeCCch
Q 011590 283 VVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKE 314 (482)
Q Consensus 283 ~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~ 314 (482)
++-.+-.....-.-.... ..++++|.|..++.
T Consensus 98 ~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 130 (201)
T 3fxa_A 98 LISKGGNTGELLNLIPACKTKGSTLIGVTENPD 130 (201)
T ss_dssp EECSSSCCHHHHTTHHHHHHHTCEEEEEESCTT
T ss_pred EEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 885332211110000000 23677888876554
No 140
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=51.91 E-value=75 Score=27.12 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHH--HHH------hCCCcEEecCchHHHHH-----------HHHHHHhHhCC
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLAN--RAV------QLGVRFIAFHNEQSAGY-----------AASAYGYLTGK 76 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~--al~------~~~i~~v~~~~E~~A~~-----------~A~g~ar~tgk 76 (482)
.++.|++.+.+.+-=++||+-++......- .+. +.++..+....+.+-.. ........-++
T Consensus 37 ~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (198)
T 2xbl_A 37 VADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGNE 116 (198)
T ss_dssp HHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCCC
Confidence 455566666777766777776655443322 221 23555555532222100 01112222233
Q ss_pred cEEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCC
Q 011590 77 PGILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSC 112 (482)
Q Consensus 77 ~~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~ 112 (482)
--++++.|..| ..+.+.++..|+..+.|++.||+..
T Consensus 117 ~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~ 153 (198)
T 2xbl_A 117 GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNR 153 (198)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCC
Confidence 33555555555 4567778888999999999999875
No 141
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=51.36 E-value=60 Score=29.61 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEe
Q 011590 207 DIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (482)
Q Consensus 207 ~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (482)
.+..+++.+..++ .-++++|..- .+.+.+.++|++.|++.++...-.|.+..-.- ..+.+.|+|+++
T Consensus 90 ~L~~A~~~i~~~~~~~~iLfVgTk~---~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~--------~~f~~PdlliV~ 158 (253)
T 3bch_A 90 KLLLAARAIVAIENPADVSVISSRN---TGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--------AAFREPRLLVVT 158 (253)
T ss_dssp HHHHHHHHHHTCSSGGGEEEEECSH---HHHHHHHHHHHHHCCEEEESCCCTTTTTCCSC--------STTCSCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecceecCCcccCccc--------cccCCCCEEEEE
Confidence 4566666666543 4478888653 46678999999999999887666676655321 135689999999
Q ss_pred cCccC
Q 011590 285 GARLN 289 (482)
Q Consensus 285 G~~~~ 289 (482)
..+-+
T Consensus 159 Dp~~e 163 (253)
T 3bch_A 159 DPRAD 163 (253)
T ss_dssp CTTTT
T ss_pred CCCcc
Confidence 86554
No 142
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=50.44 E-value=54 Score=29.02 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhC-CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEec
Q 011590 207 DIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (482)
Q Consensus 207 ~~~~~~~~L~~a-~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (482)
.++++++.+... ..-++++|.. ..+.+.+.++|++.|++.++...-.|.+..-.- ..+.+.|+|+++.
T Consensus 55 ~L~~A~~~i~~i~~~~iLfVgTk---~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~--------~~f~~PdlliV~D 123 (208)
T 1vi6_A 55 RIRVAAKFLSRYEPSKILLVAAR---QYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPML--------SEYREPEVVFVND 123 (208)
T ss_dssp HHHHHHHHHTTSCGGGEEEEECS---GGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTS--------TTCCCCSEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEEeCC---HHHHHHHHHHHHHhCCeeecCEECCCcccChhh--------HhhCCCCEEEEEC
Confidence 455556666553 4457778865 356788999999999999987666676654320 1245799999998
Q ss_pred CccC
Q 011590 286 ARLN 289 (482)
Q Consensus 286 ~~~~ 289 (482)
.+-+
T Consensus 124 p~~e 127 (208)
T 1vi6_A 124 PAID 127 (208)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6544
No 143
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=50.31 E-value=18 Score=28.30 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEecCccCcccccCCCCCCCCCCcEEEEeC
Q 011590 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDV 311 (482)
Q Consensus 232 ~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~~~~ii~id~ 311 (482)
.-+.+.|.+-|+++|+.+-....|..=+ .++ ...+-+++||+||+.+....+... | .+.+++++++
T Consensus 19 ymAaeaL~~aA~~~G~~ikVEtqGs~G~--~n~-----Lt~~~I~~Ad~VIiA~d~~v~~~R------F-~GK~v~~~~v 84 (106)
T 2r4q_A 19 FMAADALKEKAKELGVEIKVETNGSSGI--KHK-----LTAQEIEDAPAIIVAADKQVEMER------F-KGKRVLQVPV 84 (106)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEETTEE--ESC-----CCHHHHHHCSCEEEEESSCCCCGG------G-TTSBEEEECH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCc--cCC-----CCHHHHHhCCEEEEEeCCccCHhH------c-CCCeEEEeCH
Confidence 3678999999999999987765553211 111 123568899999999864433222 2 3567877766
Q ss_pred CchhhcccCCceeEeccHHHHHHHHH
Q 011590 312 CKEEIELRKPHLGLVGDAKKVLEMIN 337 (482)
Q Consensus 312 d~~~~~~~~~~~~i~~D~~~~l~~L~ 337 (482)
+. ...|++.+|++..
T Consensus 85 ~~-----------ai~~p~~~l~~a~ 99 (106)
T 2r4q_A 85 TA-----------GIRRPQELIEKAM 99 (106)
T ss_dssp HH-----------HHHCHHHHHHHHH
T ss_pred HH-----------HHHCHHHHHHHHH
Confidence 42 2345666665543
No 144
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=48.32 E-value=15 Score=29.03 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=26.3
Q ss_pred CCCEEEEcCCccccc-cHHHHHHHHHHhCCcE
Q 011590 219 KKPLIVFGKGAAYAR-AEGELKKLVESTGIPF 249 (482)
Q Consensus 219 ~rpvil~G~g~~~~~-~~~~l~~lae~~g~pv 249 (482)
+|.++++|.|...|. ....+++.++..|+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 578999999998776 4788999999999985
No 145
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=47.37 E-value=1.3e+02 Score=26.78 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC------hHHHHHHHHhCCCcEE----ecCchHHHHHHH-HHHHhHhCCcEEEEEc
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP------VTSLANRAVQLGVRFI----AFHNEQSAGYAA-SAYGYLTGKPGILLTV 83 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~------~~~l~~al~~~~i~~v----~~~~E~~A~~~A-~g~ar~tgk~~v~~~t 83 (482)
.++..+++.|.+.|-+.+--+-|.. ...+.+++.+.+++.. ........++-+ .-+-+...+|-++++.
T Consensus 104 ~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 183 (280)
T 3gyb_A 104 RGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS 183 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC
Confidence 4788899999999998887777754 2345555666665443 222222222222 2222233568888888
Q ss_pred CChhhHhhHHHHHHhhh
Q 011590 84 SGPGCVHGLAGLSNGMI 100 (482)
Q Consensus 84 ~GpG~~N~~~ai~~A~~ 100 (482)
+..-+..++.++.++-.
T Consensus 184 ~d~~a~g~~~al~~~g~ 200 (280)
T 3gyb_A 184 NDITAIGALGAARELGL 200 (280)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 87766666677666543
No 146
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=46.38 E-value=43 Score=31.51 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G 268 (482)
++....++++.|...++.++++|... +.....+..++++.++|++........+....++++.
T Consensus 59 ~p~~a~~~a~~li~~~~v~~i~g~~~--s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~~~~~~f~ 121 (353)
T 4gnr_A 59 ETAEAASVTTNLVTQSKVSAVVGPAT--SGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFI 121 (353)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEECCCS--HHHHHHHHHHHHHTTCCEEESSCCCTTTTTTCTTEEE
T ss_pred CHHHHHHHHHHHHhhCCceEEecccc--CcccceehhhhhccCcceEeecccccccccCCccccc
Confidence 34444445555555677778888664 5667788999999999999876655555555565543
No 147
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=45.49 E-value=6.3 Score=42.29 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC--CCCCCCCCCCCCcccchHHHHhhh
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT--PMGKGLLPDTHPLAATAARSLAIG 276 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t--~~~~g~~~~~hp~~~G~~~~~~l~ 276 (482)
+++++.+++.|++ .+...++.|.+.......-. .+|++.+|.+-+.+ ....+.........+|.....-++
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~-~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~~~~~d~~ 159 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQSEYGTL-RRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGSYSFASFA 159 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTCCCTTHH-HHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSSCEEECTT
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCccchHHH-HHHHHHcCCCCccCCcccchhHHHHHHHHhcCCCCCCCcc
Q ss_pred cCCEEEEecCccCcccccCCCCCCC------------CCCcEEEEeC
Q 011590 277 QCDVALVVGARLNWLLHFGEPPKWS------------KDVKFVLVDV 311 (482)
Q Consensus 277 ~aDlvl~iG~~~~~~~~~g~~~~~~------------~~~~ii~id~ 311 (482)
+||+||++|+++.+.. + .++|+|.||+
T Consensus 160 ~ad~il~~G~n~~~~~--------p~~~~~~l~~a~~~G~klividP 198 (727)
T 2e7z_A 160 DSNCLLFIGKNLSNHN--------WVSQFNDLKAALKRGCKLIVLDP 198 (727)
T ss_dssp TCSEEEEESCCCBTTB--------SHHHHHHHHHHHHHTCEEEEECS
T ss_pred cCCEEEEECCChhhcC--------CHHHHHHHHHHHHCCCeEEEECC
No 148
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=45.01 E-value=30 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCC
Q 011590 201 GGIVNSDIDKAVSLLKEAK--KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257 (482)
Q Consensus 201 ~~~~~~~~~~~~~~L~~a~--rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g 257 (482)
.+..+.++-+++++|.+.+ ||.+++|-=+-.-++.+.=.+|++..++|.++...-||
T Consensus 154 IGNAPTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 154 IGNAPTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp ECSCHHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred EeCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 4566788999999997653 89999997775557777767788888999998877776
No 149
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=44.34 E-value=2.4 Score=47.30 Aligned_cols=111 Identities=5% Similarity=-0.131 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH----HHHh
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSLA 274 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~----~~~~ 274 (482)
+++++.+++.|++. ++..++.|.+.........+.+|+..+|.+.+.....-+....-.+..+|.. ...-
T Consensus 164 deAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~~~~~~~~~D 243 (976)
T 2ivf_A 164 DEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKMHMGYSADN 243 (976)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSCCCCBCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecCCCCCCChhh
Confidence 45677777776653 3444444433321112245789999999886642110011111111222211 1123
Q ss_pred hhcCCEEEEecCccCcccccCCCCCC----CCCCcEEEEeCCchhh
Q 011590 275 IGQCDVALVVGARLNWLLHFGEPPKW----SKDVKFVLVDVCKEEI 316 (482)
Q Consensus 275 l~~aDlvl~iG~~~~~~~~~g~~~~~----~~~~~ii~id~d~~~~ 316 (482)
+.+||+||++|+++.+.... ....+ ..++|+|.||+.....
T Consensus 244 ~~nad~Il~~G~N~~~~~p~-~~~~~~~ar~~GakvivVDPr~t~t 288 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPS-SYHFLSEARYKGAEVVVIAPDFNPT 288 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTT-THHHHHHHHHHTCEEEEECSSCCTT
T ss_pred HhhCcEEEEeCCChhHcccH-HHHHHHHHHHcCCEEEEECCCCCcc
Confidence 67899999999987643211 10001 2468999999976554
No 150
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.85 E-value=1e+02 Score=28.75 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhC--CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEe
Q 011590 207 DIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284 (482)
Q Consensus 207 ~~~~~~~~L~~a--~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~i 284 (482)
.+.++++.|... +.-++++|.. ..+.+.+.++|++.|++.++...-.|.+-+-.- ..+++.|+||++
T Consensus 57 ~L~~A~~~i~~i~~~~~ILfVgTk---~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t--------~~f~~PdlliV~ 125 (295)
T 2zkq_b 57 KLLLAARAIVAIENPADVSVISSR---NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQ--------AAFREPRLLVVT 125 (295)
T ss_dssp HHHHHHHHHHHSSCGGGEEEEECS---HHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTC--------SSCCCCSEEEES
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCc---HHHHHHHHHHHHHhCCceecceEecccccCccc--------ccccCCCeEEEe
Confidence 456666666654 3447788865 345678999999999998887665666655322 134689999999
Q ss_pred cCccC
Q 011590 285 GARLN 289 (482)
Q Consensus 285 G~~~~ 289 (482)
..+-+
T Consensus 126 Dp~~e 130 (295)
T 2zkq_b 126 DPRAD 130 (295)
T ss_dssp CTTTT
T ss_pred CCCcc
Confidence 86554
No 151
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=42.58 E-value=70 Score=26.74 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHhcCCCEEEe
Q 011590 15 DGNTLAAKSLSLFGATHMFG 34 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFg 34 (482)
...+.+++.|++.| .||.
T Consensus 19 ~~~~~i~~~L~~~G--~Vl~ 36 (152)
T 4fyk_A 19 ALYARIVSRLRRYG--KVLT 36 (152)
T ss_dssp HHHHHHHHHHTTTS--EECC
T ss_pred HHHHHHHHHHHHcC--cccc
Confidence 56688999999999 4654
No 152
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=42.49 E-value=98 Score=25.96 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcC-CCEEEecCCcChHH--HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhh
Q 011590 16 GNTLAAKSLSLFG-ATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHG 91 (482)
Q Consensus 16 ~~~~l~~~L~~~G-v~~vFgvpG~~~~~--l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG-~~N~ 91 (482)
--+.+++.|.+.+ -=++||+-++.... +...+..-++..+...+... +..-.... ++--++++.|..| ..+.
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~-~~~d~vI~iS~sG~t~~~ 112 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEA---AHGDLGMV-TPQDVVIAISNSGESSEI 112 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHH---HHHTSTTC-CTTCEEEEECSSSCCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHH---hhhhhccC-CCCCEEEEEeCCCCCHHH
Confidence 3456678888875 55777775554332 22333445666654432211 11111222 3334555555555 4566
Q ss_pred HHHHHHhhhCCCcEEEEeCCCCc
Q 011590 92 LAGLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 92 ~~ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
+.++..|...+.|++.||+....
T Consensus 113 ~~~~~~ak~~g~~vi~IT~~~~s 135 (183)
T 2xhz_A 113 TALIPVLKRLHVPLICITGRPES 135 (183)
T ss_dssp HHHHHHHHTTTCCEEEEESCTTS
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
Confidence 77888899999999999987643
No 153
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=42.45 E-value=26 Score=37.40 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCC-----CCEEEEcCCccc-cccHHHHHHHHH-HhCCcEeeCCCCCCCCCCC--CCcccchH----H
Q 011590 205 NSDIDKAVSLLKEAK-----KPLIVFGKGAAY-ARAEGELKKLVE-STGIPFLPTPMGKGLLPDT--HPLAATAA----R 271 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----rpvil~G~g~~~-~~~~~~l~~lae-~~g~pv~~t~~~~g~~~~~--hp~~~G~~----~ 271 (482)
+++++.+++.|++.+ .-+.+.++.... ....-.+.+|++ .+|.+-+.+...-+..+.. ....+|.. .
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~ 160 (715)
T 2iv2_X 81 DEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGNGAMSNA 160 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCCCCCCCC
Confidence 466777777776532 234444433221 222345789998 9998866543221111111 11112210 1
Q ss_pred HHhhhcCCEEEEecCccCccccc--CCCC-CCCCCCcEEEEeCCchhh
Q 011590 272 SLAIGQCDVALVVGARLNWLLHF--GEPP-KWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 272 ~~~l~~aDlvl~iG~~~~~~~~~--g~~~-~~~~~~~ii~id~d~~~~ 316 (482)
..-+++||+||++|+++.+.... .+.. ....+.|+|.||+.....
T Consensus 161 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~t 208 (715)
T 2iv2_X 161 INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIET 208 (715)
T ss_dssp GGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred HhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCch
Confidence 13368899999999987532211 0000 012568999999876554
No 154
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=42.08 E-value=27 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.7
Q ss_pred CCEEEEcCCccccccHHHHHHHHHHhCCcE
Q 011590 220 KPLIVFGKGAAYARAEGELKKLVESTGIPF 249 (482)
Q Consensus 220 rpvil~G~g~~~~~~~~~l~~lae~~g~pv 249 (482)
|.++++|.|...|-..+.+.+.++..|+++
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~ 35 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYAKSKNINA 35 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHHHHHTCSE
T ss_pred EEEEECCChHhHHHHHHHHHHHHHHCCCCe
Confidence 468899999988867788999999999875
No 155
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=41.01 E-value=22 Score=34.18 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G 268 (482)
++....+.++.|...++..+|+|... +.....+..++++.++|+++...+...+...+|+++.
T Consensus 56 ~p~~a~~~a~~Li~~d~V~aiiG~~~--S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~~~~~fr 118 (371)
T 4f06_A 56 NPAQSKALAQELIVKEKVQYLAGLYF--TPNAMAVAPLLQEAKVPMVVMNAATSSITEKSPYIVR 118 (371)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECCS--HHHHHHHGGGHHHHTCCEEESSCCCGGGGGGCTTEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc--ccchHHHHHHHHhhcCCccccccccchhcccCCccee
Confidence 44545556666666678888888765 5677889999999999999876655445555676654
No 156
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=40.79 E-value=1.5e+02 Score=32.08 Aligned_cols=115 Identities=12% Similarity=0.028 Sum_probs=62.1
Q ss_pred cEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh----hHHH----HHHh-----hhCCC-cEEEEeCCCCcccCC
Q 011590 53 RFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH----GLAG----LSNG-----MINTW-PIVMISGSCDQKDFG 118 (482)
Q Consensus 53 ~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N----~~~a----i~~A-----~~~~~-Pvl~i~g~~~~~~~~ 118 (482)
++|....|++++.+|.||+.. |+.+. +.+.+ -+.. +... |..+ |.-.+ ++.+|.... .-..|
T Consensus 492 R~i~GI~Eh~M~gia~Glal~-G~~~f-~~t~a-tFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~-si~~G 567 (845)
T 3ahc_A 492 QVTEQLSEHQCEGFLEAYLLT-GRHGI-WSSYE-SFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSH-VWRQD 567 (845)
T ss_dssp SEEECSCHHHHHHHHHHHHHT-TCEEE-EEEEH-HHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESC-GGGCT
T ss_pred cEeeeecHHHHHHHHHHHHhc-CCCCc-eecch-hhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCC-ceeec
Confidence 677788999999999999986 65433 33333 3443 4444 4444 11244 455443332 22223
Q ss_pred C--CCCCCcCHhhhhccc---cceeeecCCcCcHHHHHHHHHHHhhcCCCceEEEEc-Ccc
Q 011590 119 R--GDFQELDQVEAVKPF---SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL-PTD 173 (482)
Q Consensus 119 ~--~~~q~~d~~~~~~~~---~k~~~~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~i-P~d 173 (482)
. ..||.+.+..++... .--..++-.|.+..+. ..|++.|...+ +|+|+.+ ...
T Consensus 568 eDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet-~~a~~~al~~~-~~~~v~v~sRq 626 (845)
T 3ahc_A 568 HNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANML-LAISEKCFKST-NKINAIFAGKQ 626 (845)
T ss_dssp TTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHH-HHHHHHHHHCB-SCEEEEECCCS
T ss_pred CCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHH-HHHHHHHHHcC-CCeEEEEecCC
Confidence 2 347775455444433 2222233345555554 46777777765 5666665 553
No 157
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=40.47 E-value=1.9e+02 Score=25.88 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcE----Ee---cCc----hHHHHHHHHHHHhHhC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRF----IA---FHN----EQSAGYAASAYGYLTG 75 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~----v~---~~~----E~~A~~~A~g~ar~tg 75 (482)
.++..+++.|.+.|-+.+.-+-|.. ...+.+++.+.++++ +. ... ....++-+.-.. +..
T Consensus 108 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-l~~ 186 (288)
T 2qu7_A 108 EAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTL-LSK 186 (288)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHH-Hhc
Confidence 5788899999999988776555431 234555666666643 32 221 222222221111 222
Q ss_pred CcEEEEEcCChhhHhhHHHHHH
Q 011590 76 KPGILLTVSGPGCVHGLAGLSN 97 (482)
Q Consensus 76 k~~v~~~t~GpG~~N~~~ai~~ 97 (482)
+|-++++.+..-+..++.++.+
T Consensus 187 ~~~ai~~~~d~~a~g~~~al~~ 208 (288)
T 2qu7_A 187 GIKGIVATNHLLLLGALQAIKE 208 (288)
T ss_dssp TCCEEEECSHHHHHHHHHHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHH
Confidence 7888888766545444545444
No 158
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=40.46 E-value=81 Score=26.55 Aligned_cols=68 Identities=6% Similarity=-0.096 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcCh----HHHHH----HHHhCCCcEEec-----CchHHHHHHHHHHHhHhCCcEEE
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIPV----TSLAN----RAVQLGVRFIAF-----HNEQSAGYAASAYGYLTGKPGIL 80 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~----~~l~~----al~~~~i~~v~~-----~~E~~A~~~A~g~ar~tgk~~v~ 80 (482)
+...+.+.+.|+++|.+..| |.... ..+++ .+.+.++=+... ......+.+=.||+++.|||.++
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~ 103 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLT 103 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 47788999999999986544 65422 22222 223334322221 23444555566777777777766
Q ss_pred EEc
Q 011590 81 LTV 83 (482)
Q Consensus 81 ~~t 83 (482)
+.+
T Consensus 104 l~~ 106 (161)
T 2f62_A 104 FTS 106 (161)
T ss_dssp ECS
T ss_pred EEc
Confidence 644
No 159
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=40.06 E-value=34 Score=38.17 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCC-----------------CCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCc
Q 011590 205 NSDIDKAVSLLKEAK-----------------KPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPL 265 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----------------rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~ 265 (482)
+++++.+++.|++.+ .-+.+.|+........-.+.+|++.+|.+-+.+...-+..+. .+..
T Consensus 127 deAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~ 206 (1015)
T 1kqf_A 127 EEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASLAP 206 (1015)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCcccccccHHHHHHHH
Confidence 467778888777642 224444443221122234688999999876543211000000 0000
Q ss_pred ccchH----HHHhhhcCCEEEEecCccCcccccCC--CC-CC-CCCCcEEEEeCCchhh
Q 011590 266 AATAA----RSLAIGQCDVALVVGARLNWLLHFGE--PP-KW-SKDVKFVLVDVCKEEI 316 (482)
Q Consensus 266 ~~G~~----~~~~l~~aDlvl~iG~~~~~~~~~g~--~~-~~-~~~~~ii~id~d~~~~ 316 (482)
.+|.. ...-+++||+||++|+++.+...... .. .. ..++|+|.||+.....
T Consensus 207 ~~G~~~~~~~~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~t 265 (1015)
T 1kqf_A 207 TFGRGAMTNHWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRT 265 (1015)
T ss_dssp HHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHH
T ss_pred HhCCCCCCCCHHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCch
Confidence 01110 01236789999999998764321110 00 01 3568999999865444
No 160
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=40.00 E-value=12 Score=21.25 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=11.1
Q ss_pred CcccchHHHHHHH
Q 011590 432 GTMGVGLGYCIAA 444 (482)
Q Consensus 432 g~mG~~l~~AiGa 444 (482)
..+||++++|+|+
T Consensus 6 ngigyaigyafga 18 (32)
T 2keg_A 6 NGIGYAIGYAFGA 18 (32)
T ss_dssp SSSHHHHHHHHHH
T ss_pred cCcceeehhhhhH
Confidence 4689999999996
No 161
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=39.49 E-value=52 Score=34.69 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEec
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (482)
..++++.+.|.+.++.+|+.-..+..-.+.-.+.++.+++|..+..-..++ +++.+-+... ......++.|+||++.
T Consensus 60 ~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~ip~r--~~egygl~~~-~I~~~~~~~~LIItVD 136 (666)
T 2zxr_A 60 EAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHR--LEEGYGVLME-RVPEHLEASDLFLTVD 136 (666)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC-----------------------CCEEEESC
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEecCCC--CCccccCCHH-HHHhhccCCCEEEEEc
Confidence 467778888888777665555544333455568888999998755332221 2222111111 1122335689999999
Q ss_pred CccCc
Q 011590 286 ARLNW 290 (482)
Q Consensus 286 ~~~~~ 290 (482)
+....
T Consensus 137 ~G~~s 141 (666)
T 2zxr_A 137 CGITN 141 (666)
T ss_dssp CC---
T ss_pred CCchh
Confidence 87654
No 162
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=39.47 E-value=2.1e+02 Score=25.55 Aligned_cols=87 Identities=10% Similarity=0.011 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHh--cCCCEEEecCCcC--------hHHHHHHHHhC-CCcEEec------CchHHHHHHH-HHHHhHhC-
Q 011590 15 DGNTLAAKSLSL--FGATHMFGVVGIP--------VTSLANRAVQL-GVRFIAF------HNEQSAGYAA-SAYGYLTG- 75 (482)
Q Consensus 15 ~~~~~l~~~L~~--~Gv~~vFgvpG~~--------~~~l~~al~~~-~i~~v~~------~~E~~A~~~A-~g~ar~tg- 75 (482)
.++..+++.|.+ .|-+.+.-+-|.. ...+.+++.+. +++++.. ......++-+ .-+-+...
T Consensus 109 ~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (291)
T 3l49_A 109 SIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPN 188 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCC
Confidence 478888999999 8988776665532 23345556555 5664321 1122222222 22222233
Q ss_pred --CcEEEEEcCChhhHhhHHHHHHhhhC
Q 011590 76 --KPGILLTVSGPGCVHGLAGLSNGMIN 101 (482)
Q Consensus 76 --k~~v~~~t~GpG~~N~~~ai~~A~~~ 101 (482)
+|-++++.+...+..++.++.++-..
T Consensus 189 ~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 189 EGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp TTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 68888888877677677777665544
No 163
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=38.51 E-value=2.2e+02 Score=25.55 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC-------hHHHHHHHHhCCCc----EEecCchHHHHHHHHHHH-hHhCCcEEEE
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP-------VTSLANRAVQLGVR----FIAFHNEQSAGYAASAYG-YLTGKPGILL 81 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~-------~~~l~~al~~~~i~----~v~~~~E~~A~~~A~g~a-r~tgk~~v~~ 81 (482)
..++...++.|.+.|-+.+--+-|.. ...+.+++.+.++. ++........++-+.-.. +...+|-+++
T Consensus 111 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 190 (289)
T 3k9c_A 111 VAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVV 190 (289)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 35788899999999998776665532 33455666666655 233322323332222211 1235688888
Q ss_pred EcCChhhHhhHHHHHHhh
Q 011590 82 TVSGPGCVHGLAGLSNGM 99 (482)
Q Consensus 82 ~t~GpG~~N~~~ai~~A~ 99 (482)
+.+..-+..++.++.++-
T Consensus 191 ~~~d~~A~g~~~al~~~g 208 (289)
T 3k9c_A 191 AFNDRCATGVLDLLVRSG 208 (289)
T ss_dssp ESSHHHHHHHHHHHHHTT
T ss_pred ECChHHHHHHHHHHHHcC
Confidence 887765666666666543
No 164
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=38.06 E-value=72 Score=27.86 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHH--H------HhCCCcEEecC--chHHH--------HHHHHHHHhHhCCc
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANR--A------VQLGVRFIAFH--NEQSA--------GYAASAYGYLTGKP 77 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~a--l------~~~~i~~v~~~--~E~~A--------~~~A~g~ar~tgk~ 77 (482)
.++.+++.|.+.+-=++||.-++......-+ + .+.++..+... ++..+ -.........-++-
T Consensus 53 ~~~~i~~~l~~~~~I~i~G~G~S~~~A~~~a~~l~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (212)
T 2i2w_A 53 AAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREG 132 (212)
T ss_dssp HHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHHHHCTTSSSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHHhhhcccCCCCeEEecCChHHhhHhhccCCHHHHHHHHHHhcCCCC
Confidence 4556666677777667788766554433222 1 12355444432 21110 00112222212233
Q ss_pred EEEEEcCChh-hHhhHHHHHHhhhCCCcEEEEeCCCC
Q 011590 78 GILLTVSGPG-CVHGLAGLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 78 ~v~~~t~GpG-~~N~~~ai~~A~~~~~Pvl~i~g~~~ 113 (482)
-++++.|..| ..+.+.++..|+..+.|+|.||+...
T Consensus 133 DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDG 169 (212)
T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3444444444 46777888889999999999998753
No 165
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=37.98 E-value=2e+02 Score=25.36 Aligned_cols=86 Identities=14% Similarity=-0.023 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcEEec---CchHHHHH-HHHHHHhHhC-CcEEE
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRFIAF---HNEQSAGY-AASAYGYLTG-KPGIL 80 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~v~~---~~E~~A~~-~A~g~ar~tg-k~~v~ 80 (482)
..++...++.|.+.|-+++.-+-|.. ...+.+++.+.+++.... ......++ ++.-+-+... +|-++
T Consensus 105 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai 184 (272)
T 3o74_A 105 RDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDAL 184 (272)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCHHHHHHHHHHHHhcCCCCCcEE
Confidence 35788899999999988876665432 223444455567654322 11222222 2222222334 58888
Q ss_pred EEcCChhhHhhHHHHHHhh
Q 011590 81 LTVSGPGCVHGLAGLSNGM 99 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~ 99 (482)
++.+..-+..++.++.++-
T Consensus 185 ~~~~d~~a~g~~~al~~~g 203 (272)
T 3o74_A 185 VTTSYVLLQGVFDTLQARP 203 (272)
T ss_dssp EESSHHHHHHHHHHHHTSC
T ss_pred EEeCchHHHHHHHHHHHcC
Confidence 8887655555555555543
No 166
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=37.82 E-value=27 Score=28.49 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=23.2
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~ 255 (482)
+=|.|++-+|. .-.+.+.++|++.|+||+.|...
T Consensus 74 ~~~~iIlt~g~---~~~~~i~~~A~~~~ipvl~t~~~ 107 (139)
T 2ioj_A 74 NVRCLILTGNL---EPVQLVLTKAEERGVPVILTGHD 107 (139)
T ss_dssp TEEEEEEETTC---CCCHHHHHHHHHHTCCEEECSSC
T ss_pred CCcEEEEcCCC---CCCHHHHHHHHHCCCeEEEECCC
Confidence 34444444443 34567889999999999987753
No 167
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.70 E-value=1.1e+02 Score=26.90 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhC-CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEEec
Q 011590 207 DIDKAVSLLKEA-KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285 (482)
Q Consensus 207 ~~~~~~~~L~~a-~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~iG 285 (482)
.+..+++.+... ..-++++|.. ..+.+.+.++|++.|++.++...-.|.+..... ......|+++++.
T Consensus 51 ~L~~A~~~i~~~~~~~ilfV~tk---~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~--------~~~~~Pdllvv~D 119 (202)
T 3j20_B 51 RLKVAGKFLAKFEPQSILAVSVR---LYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAV--------KNFFEPDVLIVTD 119 (202)
T ss_dssp HHHHHHHHHHHSCSSCEEEECCC---TTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSS--------SSCCCCSEEEESC
T ss_pred HHHHHHHHHHhhCCCeEEEEecC---hHHHHHHHHHHHHHCCceeCceecCCCcccHhH--------HhccCCCeEEEeC
Confidence 355555555543 3457778865 357789999999999988876555566655321 1235889999997
Q ss_pred CccC
Q 011590 286 ARLN 289 (482)
Q Consensus 286 ~~~~ 289 (482)
.+-+
T Consensus 120 p~~d 123 (202)
T 3j20_B 120 PRAD 123 (202)
T ss_dssp TTTS
T ss_pred Cccc
Confidence 6544
No 168
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=37.47 E-value=61 Score=28.68 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHhCC-CCEEEEcCCccccccHHHHHHHHHH-hCCcEeeCCCCCC
Q 011590 202 GIVNSDIDKAVSLLKEAK-KPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPMGKG 257 (482)
Q Consensus 202 ~~~~~~~~~~~~~L~~a~-rpvil~G~g~~~~~~~~~l~~lae~-~g~pv~~t~~~~g 257 (482)
+..+.++-++++++.+.+ ||.+++|-=+-.-++.+.=.+|.+. .++|.++...-||
T Consensus 138 GNAPTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 138 GNAPTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp SSCHHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred ECcHHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 456788999999999775 9999999777655666665666663 7999998877776
No 169
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=37.15 E-value=59 Score=32.44 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhc--CCEEEE
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQ--CDVALV 283 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~--aDlvl~ 283 (482)
+.+++..|.+..+-++++.....+..+.+.|..++++.|+|++....+ .+|.-+-..+-..+.. +|+||+
T Consensus 117 ~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~------~dp~~i~~~al~~a~~~~~DvVII 188 (443)
T 3dm5_A 117 VAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQE------KDAIKLAKEGVDYFKSKGVDIIIV 188 (443)
T ss_dssp HHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTC------CCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCC------CCHHHHHHHHHHHHHhCCCCEEEE
No 170
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=36.93 E-value=97 Score=25.96 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChHH--HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhHH
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGLA 93 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~~--l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG-~~N~~~ 93 (482)
-+.+++.|.+..-=++||.-++.... +...+..-|...+... +.. ....+ +--++++.|..| ..+.+.
T Consensus 30 i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~-~~~-------~~~~~-~~d~vi~iS~sG~t~~~~~ 100 (180)
T 1jeo_A 30 LDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVG-ETT-------TPSYE-KDDLLILISGSGRTESVLT 100 (180)
T ss_dssp HHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETT-STT-------CCCCC-TTCEEEEEESSSCCHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeC-CCc-------cccCC-CCCEEEEEeCCCCcHHHHH
Confidence 35678888887755667765543322 2233344566655543 321 12232 223444444444 456777
Q ss_pred HHHHhhhCCCcEEEEeCCCCc
Q 011590 94 GLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
++..|+..+.|++.||+....
T Consensus 101 ~~~~ak~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 101 VAKKAKNINNNIIAIVCECGN 121 (180)
T ss_dssp HHHHHHTTCSCEEEEESSCCG
T ss_pred HHHHHHHCCCcEEEEeCCCCh
Confidence 888899999999999987643
No 171
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=36.49 E-value=2.9e+02 Score=26.44 Aligned_cols=86 Identities=8% Similarity=-0.181 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC----------hHHHHHHHHhCCCcEE--ecC---c-hHHHHH-HHHHHHhHhCC
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP----------VTSLANRAVQLGVRFI--AFH---N-EQSAGY-AASAYGYLTGK 76 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~----------~~~l~~al~~~~i~~v--~~~---~-E~~A~~-~A~g~ar~tgk 76 (482)
..++...++.|.+.|-+.+--+-|.. ...+.+++.+.+++.. ... . ....++ .+.-+-+...+
T Consensus 124 ~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (412)
T 4fe7_A 124 YALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPP 203 (412)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCC
Confidence 35888999999999999887665532 1234555555565432 211 1 111121 11222223467
Q ss_pred cEEEEEcCChhhHhhHHHHHHhh
Q 011590 77 PGILLTVSGPGCVHGLAGLSNGM 99 (482)
Q Consensus 77 ~~v~~~t~GpG~~N~~~ai~~A~ 99 (482)
|-++++.+..-+..++.++.++-
T Consensus 204 ~~aI~~~nD~~A~g~~~al~~~G 226 (412)
T 4fe7_A 204 QTGIIAVTDARARHILQVCEHLH 226 (412)
T ss_dssp TEEEEESSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEecHHHHHHHHHHHHcC
Confidence 89999988776666666666543
No 172
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=36.46 E-value=70 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
.+++.+.|.+.+--++++-..+ .......+..+|+..++|++.-
T Consensus 26 ~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 5677788888777788888777 4566778999999999998754
No 173
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=35.63 E-value=2.3e+02 Score=25.33 Aligned_cols=150 Identities=9% Similarity=0.064 Sum_probs=76.3
Q ss_pred CcHHHHHHHHHHhcCC--CEEEecC----Cc--------ChHHHHHHHHhCC--CcEEec----CchHHHHHHHHHHHhH
Q 011590 14 IDGNTLAAKSLSLFGA--THMFGVV----GI--------PVTSLANRAVQLG--VRFIAF----HNEQSAGYAASAYGYL 73 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv--~~vFgvp----G~--------~~~~l~~al~~~~--i~~v~~----~~E~~A~~~A~g~ar~ 73 (482)
..++...++.|.+.|- +.+.-+- |. ....+.+++.+.+ ++.+.. .+...+--++.-+-+.
T Consensus 118 ~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (304)
T 3gbv_A 118 HQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFRE 197 (304)
T ss_dssp HHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHh
Confidence 3578889999999987 7766554 31 2334556666544 333221 1222222222222223
Q ss_pred hCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCH-hhhhcc-ccceeeecCCcCcHHHHH
Q 011590 74 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQ-VEAVKP-FSKFAVKAKDITEVPKCV 151 (482)
Q Consensus 74 tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~-~~~~~~-~~k~~~~~~~~~~~~~~l 151 (482)
..+|-++++.+.. +..++.++.++-.+.+.|+-+-+. +. ...+++ ++..+......+.....+
T Consensus 198 ~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~--------------~~~~~~~~~~~~~~tv~~~~~~~g~~av 262 (304)
T 3gbv_A 198 HPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLL--------------ERNVTCLKEGTVSFLIAQQPELQGFNSI 262 (304)
T ss_dssp CTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCC--------------HHHHHHHHHTSEEEEEECCHHHHHHHHH
T ss_pred CCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCC--------------HHHHHHHHcCceEEEEEeCHHHHHHHHH
Confidence 3468888988877 666667776654433333322111 11 223333 443334332223333344
Q ss_pred HHHHHHhhcCCCceEEEEcCcchhccc
Q 011590 152 AQVLERAVSGRPGGCYLDLPTDVLHQT 178 (482)
Q Consensus 152 ~~A~~~a~~~~~gPv~l~iP~dv~~~~ 178 (482)
+..++....+...|-.+.+|..+....
T Consensus 263 ~~l~~~i~~~~~~~~~~~~~~~lv~r~ 289 (304)
T 3gbv_A 263 KTLCDHLIFRKEVACTNYMPIDLLTKE 289 (304)
T ss_dssp HHHHHHHTSCCCCCSEEECCCEEECTT
T ss_pred HHHHHHHhcCCCCCceeecCcEEEEcc
Confidence 444444444554567788888766554
No 174
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=35.61 E-value=66 Score=28.39 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHh-C---CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcC
Q 011590 203 IVNSDIDKAVSLLKE-A---KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQC 278 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~-a---~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~a 278 (482)
.+.+.+++++++|.+ + .+-++++|.|... .....+.....++|.++..-.. .+... + ....+.+-
T Consensus 39 ld~~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~-~~A~~~~~~l~~lg~~~~~~~~-------~~~~~-~--~~~~~~~~ 107 (220)
T 3etn_A 39 PVTDAYEKAVELIVEQIHRKKGKLVTSGMGKAG-QIAMNIATTFCSTGIPSVFLHP-------SEAQH-G--DLGILQEN 107 (220)
T ss_dssp CCCTHHHHHHHHHHHHTTTTCCCEEEECSHHHH-HHHHHHHHHHHHTTCCEEECCT-------TGGGB-T--GGGGCCTT
T ss_pred cCHHHHHHHHHHHHhHhhccCCEEEEEEecHHH-HHHHHHHHHHHhcCCcEEEeCC-------HHHHH-h--hhccCCCC
Confidence 356789999999998 3 5778888988642 3344455555568888765321 11111 1 11345677
Q ss_pred CEEEEecCccCcccccCCCCCC-C--CCCcEEEEeCCch
Q 011590 279 DVALVVGARLNWLLHFGEPPKW-S--KDVKFVLVDVCKE 314 (482)
Q Consensus 279 Dlvl~iG~~~~~~~~~g~~~~~-~--~~~~ii~id~d~~ 314 (482)
|++|++-.+-.....-.-.... . .++++|.|..++.
T Consensus 108 DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 108 DLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp CEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 9999885332210000000001 2 5678888876544
No 175
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=35.50 E-value=65 Score=30.36 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G 268 (482)
++....+.++.|.+.+++..++|... +.....+..++++.++|++........+...+|+++.
T Consensus 65 ~~~~~~~~~~~l~~~~~v~~iiG~~~--s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~ 127 (366)
T 3td9_A 65 EKTEAANAAARAIDKEKVLAIIGEVA--SAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSR 127 (366)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECSS--HHHHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEE
T ss_pred CHHHHHHHHHHHhccCCeEEEEccCC--chhHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEE
Confidence 34444455555555567878888654 4566778899999999999765543333444565543
No 176
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=35.38 E-value=1.3e+02 Score=29.09 Aligned_cols=90 Identities=10% Similarity=0.146 Sum_probs=52.4
Q ss_pred HHHHHHHHhc-CCCEEEecCCcChHHHHHHH-HhCCCc--E-Eec--CchHHHHHHHH---HHHh--HhCCcEEEEEcCC
Q 011590 18 TLAAKSLSLF-GATHMFGVVGIPVTSLANRA-VQLGVR--F-IAF--HNEQSAGYAAS---AYGY--LTGKPGILLTVSG 85 (482)
Q Consensus 18 ~~l~~~L~~~-Gv~~vFgvpG~~~~~l~~al-~~~~i~--~-v~~--~~E~~A~~~A~---g~ar--~tgk~~v~~~t~G 85 (482)
.-+++.|++. |++...++.|.+.. +.+.+ +.-+++ + +.. ..+.-+..++. +..+ ..-||-+++++.+
T Consensus 42 a~li~~l~~~~~~~~~~~~tG~h~~-~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~ 120 (396)
T 3dzc_A 42 APLVQQLCQDNRFVAKVCVTGQHRE-MLDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGD 120 (396)
T ss_dssp HHHHHHHHHCTTEEEEEEECCSSSH-HHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETT
T ss_pred HHHHHHHHhCCCCcEEEEEecccHH-HHHHHHHhcCCCCceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3467778876 78898999998852 33332 333442 1 221 11222222222 2333 2358999998855
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeC
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISG 110 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g 110 (482)
.. ..+.+...|+..++|++++-+
T Consensus 121 ~~--~~~~~~~aa~~~~IPv~h~~a 143 (396)
T 3dzc_A 121 TA--TTFAASLAAYYQQIPVGHVEA 143 (396)
T ss_dssp SH--HHHHHHHHHHTTTCCEEEETC
T ss_pred ch--hHHHHHHHHHHhCCCEEEEEC
Confidence 42 345556678899999988754
No 177
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=35.19 E-value=97 Score=33.90 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=66.1
Q ss_pred CcEEe-cCchHHH-H---HHHHHHHhHhC--CcEEEEEcCChhhHhhHHHHHHh-hhCCCcEEEEeCCCCcccCC-CC-C
Q 011590 52 VRFIA-FHNEQSA-G---YAASAYGYLTG--KPGILLTVSGPGCVHGLAGLSNG-MINTWPIVMISGSCDQKDFG-RG-D 121 (482)
Q Consensus 52 i~~v~-~~~E~~A-~---~~A~g~ar~tg--k~~v~~~t~GpG~~N~~~ai~~A-~~~~~Pvl~i~g~~~~~~~~-~~-~ 121 (482)
=+++. .-.|++| + .+|.||+...+ +|- ++..+-=++.-+.--+-.+ -+.+.++++. +.......+ .| .
T Consensus 562 ~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~-~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~-~~~~~~~~g~dG~t 639 (886)
T 2qtc_A 562 GQILQEGINELGAGCSWLAAATSYSTNNLPMIPF-YIYYSMFGFQRIGDLCWAAGDQQARGFLIG-GTSGRTTLNGEGLQ 639 (886)
T ss_dssp CCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEE-EEEEGGGSHHHHHHHHHHHHHTTCCCEEEE-ESCSTTTSTTTCTT
T ss_pred CceeeeccCchhhhhHHHHHHHHHHhcCCCceEE-EEEehHHHHHHHHHHHHHHHHHhcCCEEEE-EecCcccCCCCCCc
Confidence 35554 5789986 4 58889998752 454 3333222333333333332 3345565554 332222222 22 4
Q ss_pred CCCcCHhhhhccccceee-ecCCcCcHHHHHHHHHHHhhcCCCce----EEEEcCcc
Q 011590 122 FQELDQVEAVKPFSKFAV-KAKDITEVPKCVAQVLERAVSGRPGG----CYLDLPTD 173 (482)
Q Consensus 122 ~q~~d~~~~~~~~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gP----v~l~iP~d 173 (482)
||.+....+++.+-.... .+.++.++..++..|++.. .|| |++-+|..
T Consensus 640 Hq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~----~gP~~e~v~i~~~r~ 692 (886)
T 2qtc_A 640 HEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM----YGEKQENVYYYITTL 692 (886)
T ss_dssp TCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH----HSTTCCCCEEEEECC
T ss_pred cCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc----CCCCCceEEEEEeCC
Confidence 777777888998876444 4456677777777777643 257 88888853
No 178
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=35.03 E-value=47 Score=24.39 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.++..+.|++.+--++++...+.. ...+.+..+|+..++|++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 466778888877777887777754 566789999999999998643
No 179
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=34.89 E-value=15 Score=41.88 Aligned_cols=111 Identities=14% Similarity=-0.067 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhC------CCCEEEEcCCccccc-cHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchH----HHH
Q 011590 205 NSDIDKAVSLLKEA------KKPLIVFGKGAAYAR-AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA----RSL 273 (482)
Q Consensus 205 ~~~~~~~~~~L~~a------~rpvil~G~g~~~~~-~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~----~~~ 273 (482)
+++++.+++.|+.. ++ +...+++-.... ......+|+..+|.+.+.....-+..|..++..+|.. ...
T Consensus 164 DEAld~IA~~l~~i~~~~Gp~s-I~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~~G~~~~~~~~~ 242 (1247)
T 1q16_A 164 QEVNELIAASNVYTIKNYGPDR-VAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESA 242 (1247)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGG-EEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCSCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHhCCce-EEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHHhCCCCCCCCHH
Confidence 45666666666542 22 333333322111 1122358999999987643322121222122222310 012
Q ss_pred hhhcCCEEEEecCccCccccc--CCCC-CCCCCCcEEEEeCCchhh
Q 011590 274 AIGQCDVALVVGARLNWLLHF--GEPP-KWSKDVKFVLVDVCKEEI 316 (482)
Q Consensus 274 ~l~~aDlvl~iG~~~~~~~~~--g~~~-~~~~~~~ii~id~d~~~~ 316 (482)
-+.+||+||++|+++.+..+. .+.. .-..++|+|.||+.....
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~t 288 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEI 288 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHH
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcc
Confidence 356899999999987532211 0000 012478999999976544
No 180
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=34.67 E-value=62 Score=27.41 Aligned_cols=101 Identities=16% Similarity=0.055 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
.+.+.+++++++|.+++ -++++|.|... .....+.....++|.++..-.. ..+.+. .....+.+-|++|
T Consensus 24 l~~~~l~~~~~~i~~a~-~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~~~~------~~~~~~---~~~~~~~~~d~~i 92 (187)
T 3sho_A 24 TQPEAIEAAVEAICRAD-HVIVVGMGFSA-AVAVFLGHGLNSLGIRTTVLTE------GGSTLT---ITLANLRPTDLMI 92 (187)
T ss_dssp CCHHHHHHHHHHHHHCS-EEEEECCGGGH-HHHHHHHHHHHHTTCCEEEECC------CTHHHH---HHHHTCCTTEEEE
T ss_pred CCHHHHHHHHHHHHhCC-EEEEEecCchH-HHHHHHHHHHHhcCCCEEEecC------CchhHH---HHHhcCCCCCEEE
Confidence 46789999999999985 68888888743 3445555555678888764321 111111 1123456778988
Q ss_pred EecCccCcccccCCCCCC-CCCCcEEEEeCCch
Q 011590 283 VVGARLNWLLHFGEPPKW-SKDVKFVLVDVCKE 314 (482)
Q Consensus 283 ~iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~ 314 (482)
++-.+-.....-.-.... ..++++|.|..++.
T Consensus 93 ~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 93 GVSVWRYLRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp EECCSSCCHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred EEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 885332210000000000 24678888876554
No 181
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=34.20 E-value=40 Score=28.53 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEE
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (482)
++ .+++++++|.++++.++++|.|... ...+.+.....++|.++..... .+.. ......+.+-|++|+
T Consensus 35 ~~-~i~~~~~~i~~a~~~I~i~G~G~S~-~~a~~~~~~l~~~g~~~~~~~~-------~~~~---~~~~~~~~~~d~vI~ 102 (183)
T 2xhz_A 35 NQ-NFTLACEKMFWCKGKVVVMGMGASG-HIGRKMAATFASTGTPSFFVHP-------GEAA---HGDLGMVTPQDVVIA 102 (183)
T ss_dssp SH-HHHHHHHHHHTCSSCEEEEECHHHH-HHHHHHHHHHHTTTCCEEECCT-------THHH---HHTSTTCCTTCEEEE
T ss_pred HH-HHHHHHHHHHhCCCeEEEEeecHHH-HHHHHHHHHHHhcCceEEEeCc-------hHHh---hhhhccCCCCCEEEE
Confidence 45 8999999999998789999988643 2333444334456777653221 1000 000123457799998
Q ss_pred ecC
Q 011590 284 VGA 286 (482)
Q Consensus 284 iG~ 286 (482)
+-.
T Consensus 103 iS~ 105 (183)
T 2xhz_A 103 ISN 105 (183)
T ss_dssp ECS
T ss_pred EeC
Confidence 853
No 182
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.13 E-value=2.5e+02 Score=25.00 Aligned_cols=84 Identities=13% Similarity=0.093 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcE--EecCchHHHHHHHHHH--H-hHhCCcEEEE
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRF--IAFHNEQSAGYAASAY--G-YLTGKPGILL 81 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~--v~~~~E~~A~~~A~g~--a-r~tgk~~v~~ 81 (482)
.++..+++.|.+.|-+.+.-+-|.. ...+.+++.+.++++ +........++-+.-. . ....+|-+++
T Consensus 110 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 189 (285)
T 3c3k_A 110 AASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIF 189 (285)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHcCCCCCeEEE
Confidence 5788889999999988765555432 233555666556543 2221111112222111 1 1223677888
Q ss_pred EcCChhhHhhHHHHHHh
Q 011590 82 TVSGPGCVHGLAGLSNG 98 (482)
Q Consensus 82 ~t~GpG~~N~~~ai~~A 98 (482)
+.+..-+..++.++.++
T Consensus 190 ~~~d~~A~g~~~al~~~ 206 (285)
T 3c3k_A 190 AISDVLAAGAIQALTES 206 (285)
T ss_dssp ESSHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHc
Confidence 87665555555555443
No 183
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=34.08 E-value=2.3e+02 Score=31.12 Aligned_cols=119 Identities=12% Similarity=0.064 Sum_probs=69.5
Q ss_pred CcEEe-cCchHHHHHHHHHHHhHhCC--cEEEEEcCChhhHhh----HHHH---HHhh-hCCCcEEEEeCCCCcccCCCC
Q 011590 52 VRFIA-FHNEQSAGYAASAYGYLTGK--PGILLTVSGPGCVHG----LAGL---SNGM-INTWPIVMISGSCDQKDFGRG 120 (482)
Q Consensus 52 i~~v~-~~~E~~A~~~A~g~ar~tgk--~~v~~~t~GpG~~N~----~~ai---~~A~-~~~~Pvl~i~g~~~~~~~~~~ 120 (482)
.+++. .-.|++++.+|.||+...-+ |.+. .+.|. +.|. +-=+ .+|+ ..+.||+++.... . .|.|
T Consensus 652 ~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e-~qf~d-F~~~AQra~DQii~~~~ak~~~~~~vv~~l~~G-~--~g~G 726 (933)
T 2jgd_A 652 FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWE-AQFGD-FANGAQVVIDQFISSGEQKWGRMCGLVMLLPHG-Y--EGQG 726 (933)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHCTTSEEEEE-C-CGG-GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECC-C--SSSC
T ss_pred CeEEECCcCHHHHHHHHHHHHhcCCCCCCEEE-EEEhh-hhcccHHHHHHHHHHHHHHHccCCCEEEEEeCC-C--CCCC
Confidence 45553 47899999999999998666 3322 24443 3441 1111 1343 4789998887642 2 2333
Q ss_pred -CCCCcCHhhhhcc--ccceee-ecCCcCcHHHHHHHHHHHhhcCCCceEEEEcCcchhccc
Q 011590 121 -DFQELDQVEAVKP--FSKFAV-KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178 (482)
Q Consensus 121 -~~q~~d~~~~~~~--~~k~~~-~~~~~~~~~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~ 178 (482)
.|+......++.- +-.+.. .+.++.++..+|++|+. ...++|+++.-|..++...
T Consensus 727 ~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~---~~~~~Pvii~~pk~l~r~~ 785 (933)
T 2jgd_A 727 PEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQAL---RGMRRPLVVMSPKSLLRHP 785 (933)
T ss_dssp TTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHH---SSCCCCEEEEECSGGGGCT
T ss_pred cccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHH---hcCCCcEEEEecchhccCC
Confidence 3444333444432 234444 34567777777776642 3224999999999887643
No 184
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.97 E-value=2.7e+02 Score=25.74 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=50.3
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcEEec--CchHHHHHHHHHHHhHhCCcEEEEEcC
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRFIAF--HNEQSAGYAASAYGYLTGKPGILLTVS 84 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~v~~--~~E~~A~~~A~g~ar~tgk~~v~~~t~ 84 (482)
.++...++.|.+.|-+++.-+-|.. ...+.+++.+.+++++.. ......++-+.-.....+.|-++++.+
T Consensus 160 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~n 239 (333)
T 3jvd_A 160 AGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVFNNGLPDALIVAS 239 (333)
T ss_dssp HHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHhcCCCCcEEEECC
Confidence 5788899999999999876665542 234556666778764332 222222222222222223378888887
Q ss_pred ChhhHhhHHHHHHhh
Q 011590 85 GPGCVHGLAGLSNGM 99 (482)
Q Consensus 85 GpG~~N~~~ai~~A~ 99 (482)
..-+..++.++.++-
T Consensus 240 d~~A~g~~~al~~~G 254 (333)
T 3jvd_A 240 PRLMAGVMRAFTRLN 254 (333)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 665555666665543
No 185
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=33.91 E-value=1e+02 Score=24.47 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
-.+++.+.|.+.+--++++...+....-...+..+|+..|+|++..
T Consensus 24 G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v 69 (121)
T 2lbw_A 24 GVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFI 69 (121)
T ss_dssp SHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEEC
T ss_pred cHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3567788888888888888888754344778999999999999753
No 186
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.89 E-value=12 Score=27.46 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=37.3
Q ss_pred cCCcHHHHH------HHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHHHHHHH
Q 011590 12 AQIDGNTLA------AKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAA 67 (482)
Q Consensus 12 ~~~~~~~~l------~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A 67 (482)
..++.+|++ ++.|.++|++ ++|+|.+....|-+++...|+..=....|.++....
T Consensus 5 ~d~tI~eIv~~~P~~~~vf~~~G~~-C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 5 KDMIIADVLQMDRGTAPIFINNGMH-CLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp TTSBHHHHHHHCGGGHHHHHHTTCC-CCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCHHHHHHHHHcCCC-CCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 455666654 5679999999 999997766778788776666543444555554433
No 187
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.85 E-value=91 Score=23.66 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
.+++.+.|++.+--+++.-..+. ....+.+..+|+..++|++.-
T Consensus 20 ~~~v~kai~~gka~lViiA~D~~-~~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKNAP-KEIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECCCC-HHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCccEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEe
Confidence 56677778777777777776653 466778999999999998653
No 188
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=33.64 E-value=1.2e+02 Score=25.59 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChH--HHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh-HhhHH
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC-VHGLA 93 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~-~N~~~ 93 (482)
-+.+++.|.+..-=++||+-++... .+...|.+-++..... ++.. .... ++--++++.|..|- .+.+.
T Consensus 27 i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~-~~~~-------~~~~-~~~d~vI~iS~sG~t~~~~~ 97 (186)
T 1m3s_A 27 ADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIV-GEIL-------TPPL-AEGDLVIIGSGSGETKSLIH 97 (186)
T ss_dssp HHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEET-TSTT-------CCCC-CTTCEEEEECSSSCCHHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEe-Cccc-------ccCC-CCCCEEEEEcCCCCcHHHHH
Confidence 4667888888775566676544322 2223344556655554 3331 1222 33335555555653 56677
Q ss_pred HHHHhhhCCCcEEEEeCCCC
Q 011590 94 GLSNGMINTWPIVMISGSCD 113 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~ 113 (482)
.+..|+..+.|+|.||+...
T Consensus 98 ~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 98 TAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp HHHHHHHTTCEEEEEESCTT
T ss_pred HHHHHHHCCCEEEEEECCCC
Confidence 88889999999999998754
No 189
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=33.08 E-value=48 Score=32.29 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCCCEEEEcCCcccc--ccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc--hHHHHhh-hcCCEEEEec
Q 011590 218 AKKPLIVFGKGAAYA--RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT--AARSLAI-GQCDVALVVG 285 (482)
Q Consensus 218 a~rpvil~G~g~~~~--~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G--~~~~~~l-~~aDlvl~iG 285 (482)
.+|++|+.|.+.... +..+.+.+..+..|+.+..-... +.+|-.-- .....+. .++|+||+||
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGV-----EPNPKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCC-----CSSCBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 478999999887666 57888888888888876421111 12332211 1122222 4789999998
No 190
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=32.94 E-value=17 Score=34.59 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEe---eCCCCCCCCCC-CCCcccchHHHHhhhcCCE
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFL---PTPMGKGLLPD-THPLAATAARSLAIGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~---~t~~~~g~~~~-~hp~~~G~~~~~~l~~aDl 280 (482)
+..+++.+.+..+.--+|..|-|.- .+++...+.++++.++++++ +.|.. +.. ..|+..-...+.+.+.+|.
T Consensus 84 e~~d~I~~~le~~d~~~i~as~GGGTGSG~~~~la~~a~e~g~lt~~vv~~P~~---~Eg~~~~~nA~~~l~~L~e~~D~ 160 (320)
T 1ofu_A 84 EDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFP---FEGRKRMQIADEGIRALAESVDS 160 (320)
T ss_dssp HTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHhcCCcEEEEEeCCcc---ccchhHHHHHHHHHHHHHHhCCE
Confidence 3456666777777765566553332 35777889999999998754 33321 100 0122222223457788999
Q ss_pred EEEe
Q 011590 281 ALVV 284 (482)
Q Consensus 281 vl~i 284 (482)
+|+|
T Consensus 161 ~ivi 164 (320)
T 1ofu_A 161 LITI 164 (320)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 191
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=32.60 E-value=1e+02 Score=26.51 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCEEEecCCcChH--HHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhh-HhhHH
Q 011590 17 NTLAAKSLSLFGATHMFGVVGIPVT--SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC-VHGLA 93 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgvpG~~~~--~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~-~N~~~ 93 (482)
-+.+++.|.+.+-=++||+-++... .+...|..-+...+... +.. ....++--++++.|..|- ...+.
T Consensus 37 l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~-~~~--------~~~~~~~DvvI~iS~SG~t~~~i~ 107 (200)
T 1vim_A 37 VGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVG-ETV--------TPRITDQDVLVGISGSGETTSVVN 107 (200)
T ss_dssp HHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT-STT--------CCCCCTTCEEEEECSSSCCHHHHH
T ss_pred HHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeC-Ccc--------ccCCCCCCEEEEEeCCCCcHHHHH
Confidence 4677888888886677777555332 22333445566665543 221 121233346666666664 45667
Q ss_pred HHHHhhhCCCcEEEEeCCCCc
Q 011590 94 GLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 94 ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
.+..|+..++|+|.||+....
T Consensus 108 ~~~~ak~~g~~vI~IT~~~~s 128 (200)
T 1vim_A 108 ISKKAKDIGSKLVAVTGKRDS 128 (200)
T ss_dssp HHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHCCCeEEEEECCCCC
Confidence 777799999999999987633
No 192
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=32.33 E-value=84 Score=26.99 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHHHHHhc-CCCEEEecCCcChHH--HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh-hHhhH
Q 011590 17 NTLAAKSLSLF-GATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG-CVHGL 92 (482)
Q Consensus 17 ~~~l~~~L~~~-Gv~~vFgvpG~~~~~--l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG-~~N~~ 92 (482)
-+.+++.|.+. +-=++||+-++.... +...|.+-++....... .. ++..-....+. --++++.|..| ..+.+
T Consensus 34 i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-~~--~~~~~~~~~~~-~dvvI~iS~sG~t~~~~ 109 (201)
T 3fxa_A 34 LVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTP-SD--AVHGTLGVLQK-EDILILISKGGNTGELL 109 (201)
T ss_dssp HHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCH-HH--HTTTGGGGCCT-TCEEEEECSSSCCHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCc-hH--HHhhhhhcCCC-CCEEEEEeCCCCCHHHH
Confidence 45678888888 466778875554332 22234456766655432 11 11111222333 33555555565 44556
Q ss_pred HHHHHhhhCCCcEEEEeCCCCc
Q 011590 93 AGLSNGMINTWPIVMISGSCDQ 114 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~~~~ 114 (482)
.++..|+..++++|.||+....
T Consensus 110 ~~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 110 NLIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp TTHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHcCCeEEEEECCCCC
Confidence 6777899999999999987643
No 193
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=31.88 E-value=54 Score=26.21 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEe
Q 011590 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (482)
Q Consensus 19 ~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~ 56 (482)
.+++.+.+.|++.+.-.+|....++.+.+++.||+++.
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPVI 110 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEEC
Confidence 45677888899999999998888888888889999884
No 194
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.72 E-value=2.7e+02 Score=24.66 Aligned_cols=94 Identities=4% Similarity=-0.052 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHhc-C-CCEEEecCCcC--------hHHHHHHHHhCCCcEE---ecCchHHHHHHH-HHHHhHhCCcEEE
Q 011590 15 DGNTLAAKSLSLF-G-ATHMFGVVGIP--------VTSLANRAVQLGVRFI---AFHNEQSAGYAA-SAYGYLTGKPGIL 80 (482)
Q Consensus 15 ~~~~~l~~~L~~~-G-v~~vFgvpG~~--------~~~l~~al~~~~i~~v---~~~~E~~A~~~A-~g~ar~tgk~~v~ 80 (482)
.++..+++.|.+. | -+.+.-+-|.. ...+.+++.+.++.+. ........++-+ .-+-....+|-++
T Consensus 115 ~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 194 (289)
T 3brs_A 115 QAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVM 194 (289)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEeeecCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 4788889999996 7 87776555431 2234455555554432 222122222211 1111223468888
Q ss_pred EEcCChhhHhhHHHHHHhhh-CCCcEEEE
Q 011590 81 LTVSGPGCVHGLAGLSNGMI-NTWPIVMI 108 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~~-~~~Pvl~i 108 (482)
++.+...+..++.++.++-. +.+.|+-+
T Consensus 195 ~~~~d~~a~g~~~al~~~G~~~di~vvg~ 223 (289)
T 3brs_A 195 VGLNQYSATGAARAIKDMSLEAKVKLVCI 223 (289)
T ss_dssp EESSHHHHHHHHHHHHHTTCTTTSEEEEE
T ss_pred EECCCcchHHHHHHHHhcCCCCCEEEEEE
Confidence 88876655556666655432 33444443
No 195
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=31.47 E-value=74 Score=30.24 Aligned_cols=63 Identities=10% Similarity=-0.023 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCcccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAAT 268 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~~~G 268 (482)
++....++++.|...++...|+|... +.....+..++++.++|++.+......+.. .+|+++.
T Consensus 57 ~~~~a~~~~~~li~~~~v~aiiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr 121 (374)
T 3n0x_A 57 KPDLSKAALAEAYQDDGADIAIGTSS--SAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFR 121 (374)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECSS--HHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEE
T ss_pred CHHHHHHHHHHHHHhCCceEEEcCCC--cHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEE
Confidence 33444444555555567778888664 567778899999999999876543322322 2466554
No 196
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=31.26 E-value=95 Score=23.64 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.+++.+.|++.+--+++.-..+ .......+..+|+..++|++.
T Consensus 21 ~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~vp~~~ 63 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARNA-RPDIKEDIEYYARLSGIPVYE 63 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETTS-CHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCC-CHHHHHHHHHHHHhcCCCEEE
Confidence 5667777777666666666554 246667899999999999875
No 197
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=31.23 E-value=1.2e+02 Score=28.15 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
...+..++..+....+.+++++....++.+.+.+..++++.|+|++..
T Consensus 112 TT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~ 159 (297)
T 1j8m_F 112 TTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 159 (297)
T ss_dssp THHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEec
Confidence 346777788888777888899988887888888999999999999864
No 198
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=30.70 E-value=31 Score=31.52 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAY 231 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~ 231 (482)
+.+++++++|+++++.+|+.|.|+..
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~ 28 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISA 28 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhH
Confidence 46889999999999999999999853
No 199
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=30.59 E-value=89 Score=29.62 Aligned_cols=62 Identities=6% Similarity=-0.072 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAA 267 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~~~ 267 (482)
+++...+.++.|...++...++|... +.....+..++++.++|++........+.. .+|+++
T Consensus 57 ~~~~a~~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f 120 (379)
T 3n0w_A 57 KTDVALSIAREWFDRDGVDAIFDVVN--SGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGI 120 (379)
T ss_dssp CHHHHHHHHHHHHHHSCCCEEEECCC--HHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEE
T ss_pred CHHHHHHHHHHHHHhCCceEEEcCCC--cHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEE
Confidence 34444445555555567888888654 566677899999999999976443323332 255544
No 200
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=30.43 E-value=2.4e+02 Score=24.29 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCEEEecCCcChH------HHHHHHHhCCCcEEecC--c-----h-HHHHHHH-HHHHhHhCCcEEEEEcC
Q 011590 20 AAKSLSLFGATHMFGVVGIPVT------SLANRAVQLGVRFIAFH--N-----E-QSAGYAA-SAYGYLTGKPGILLTVS 84 (482)
Q Consensus 20 l~~~L~~~Gv~~vFgvpG~~~~------~l~~al~~~~i~~v~~~--~-----E-~~A~~~A-~g~ar~tgk~~v~~~t~ 84 (482)
-.+.|+++||++|+-+-..... .+.+.+...|++++... + . .-..+.. .-.....+++.++=|+.
T Consensus 63 d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~~~p~~~~~~~~~~~i~~~~~~~~~VlVHC~a 142 (212)
T 1fpz_A 63 DTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHSYG 142 (212)
T ss_dssp HHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 3788999999999988764221 22334455788887642 1 1 1111110 11111257788888888
Q ss_pred ChhhHhhHHHHHHhh
Q 011590 85 GPGCVHGLAGLSNGM 99 (482)
Q Consensus 85 GpG~~N~~~ai~~A~ 99 (482)
|.|=+.++.++.-..
T Consensus 143 G~gRTg~~~a~~L~~ 157 (212)
T 1fpz_A 143 GLGRSCLVAACLLLY 157 (212)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888777776655443
No 201
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=30.26 E-value=58 Score=30.90 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEe
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~ 56 (482)
.-+.+++.|+++||+..|.+-|...+.-...+.+.++.+|.
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~l~~~~i~vig 121 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGAKKLTEHGFPCVG 121 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCcEEE
Confidence 56788999999999999999999888777777766666554
No 202
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=30.26 E-value=96 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCCCEEEE-cCCccccccHHHHHHHHHHhCCcEe
Q 011590 206 SDIDKAVSLLKEAKKPLIVF-GKGAAYARAEGELKKLVESTGIPFL 250 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~-G~g~~~~~~~~~l~~lae~~g~pv~ 250 (482)
+..+.+.+.+++.++.+++. ++.-..++....+.+.+++.|++|-
T Consensus 67 ~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~ 112 (117)
T 3hh1_A 67 RAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVV 112 (117)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEE
Confidence 44667788888888999999 4444445666677777777888875
No 203
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=30.05 E-value=66 Score=35.13 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCC-----CEEEEcCC----ccccccHHHHHHHHHHhCCcEeeCC-CCCCCCCCC-----CCcc-cc
Q 011590 205 NSDIDKAVSLLKEAKK-----PLIVFGKG----AAYARAEGELKKLVESTGIPFLPTP-MGKGLLPDT-----HPLA-AT 268 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~r-----pvil~G~g----~~~~~~~~~l~~lae~~g~pv~~t~-~~~g~~~~~-----hp~~-~G 268 (482)
+++++.+++.|++.+. .+.+.+++ .........+.+|++.+|.+-+... ...+.+... .+.. +|
T Consensus 115 deAl~~iA~kl~~i~~~~G~~si~~~~~~~~~~g~~~~~~~~~~rf~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~G 194 (875)
T 1ti6_A 115 DEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLG 194 (875)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHHHHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHhCcceEEeecCCCcccCcccchhHHHHHHHHhcCCCccccCcCccCccchhhhcccccceeee
Q ss_pred h-----HHHHhhhcCCEEEEecCccCcccccCCCCCCC---------CCCcEEEEeC
Q 011590 269 A-----ARSLAIGQCDVALVVGARLNWLLHFGEPPKWS---------KDVKFVLVDV 311 (482)
Q Consensus 269 ~-----~~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~---------~~~~ii~id~ 311 (482)
. .....+++||+||++|+++ +........... .++|+|.||+
T Consensus 195 ~~~~~~~~~~~~~~ad~il~~G~Np-~~~p~~~~~~~~~~~~~~a~~~G~klivIDP 250 (875)
T 1ti6_A 195 NPEQYDLLEDGLKHAEMIVFWSSDP-ETNSGIYAGFESNIRRQWLKDLGVDFVFIDP 250 (875)
T ss_dssp CCCCTTHHHHHHHHCSEEEEESCCH-HHHCSSSCTTTTHHHHHHHHHTTCEEEEECS
T ss_pred cccccCCcHhHHhcCCEEEEECCCh-hhCCccCCCccchHHHHHHHHcCCeEEEECC
No 204
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=29.96 E-value=3e+02 Score=24.62 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCc-----EEecCchHHHHHHHHHHHh-HhCCcEE
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVR-----FIAFHNEQSAGYAASAYGY-LTGKPGI 79 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~-----~v~~~~E~~A~~~A~g~ar-~tgk~~v 79 (482)
..++...++.|.+.|-+.+--+-|.. ...+.+++.+.+++ ++........++-+.-... ...+|-+
T Consensus 111 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 190 (294)
T 3qk7_A 111 HAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTA 190 (294)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSE
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcE
Confidence 35788899999999988775554432 23455566666654 2233323333332222222 2356888
Q ss_pred EEEcCChhhHhhHHHHHHh
Q 011590 80 LLTVSGPGCVHGLAGLSNG 98 (482)
Q Consensus 80 ~~~t~GpG~~N~~~ai~~A 98 (482)
+++.+..-+..++.++.++
T Consensus 191 i~~~nd~~A~g~~~al~~~ 209 (294)
T 3qk7_A 191 IITDCNMLGDGVASALDKA 209 (294)
T ss_dssp EEESSHHHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHc
Confidence 8888766555566666554
No 205
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=29.58 E-value=15 Score=39.69 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------CCCCEEEEcCCccccccHHHHHHHH-HHhCCcEeeCCC---CCCCCCCCCCcccchHHH--
Q 011590 205 NSDIDKAVSLLKE------AKKPLIVFGKGAAYARAEGELKKLV-ESTGIPFLPTPM---GKGLLPDTHPLAATAARS-- 272 (482)
Q Consensus 205 ~~~~~~~~~~L~~------a~rpvil~G~g~~~~~~~~~l~~la-e~~g~pv~~t~~---~~g~~~~~hp~~~G~~~~-- 272 (482)
+++++.+++.|++ .+...++.| +... -.+.+|+ +.+|.+.+.+.. ..+.-..-....+|....
T Consensus 118 deAl~~ia~~l~~i~~~~G~~~i~~~~~-~~~e----~~~~~~~r~~~Gt~n~~~~~~~~c~~~~~~~~~~~~G~~~~~~ 192 (765)
T 2vpz_A 118 EEALDHIAKKMLEIREKYGPEAIAFFGH-GTGD----YWFVDFLPAAWGSPNAAKPSVSLCTAPREVASQWVFGRPIGGH 192 (765)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGCEEEEC-STTH----HHHTTTHHHHHTCCCEECHHHHTTTHHHHHHHHHHSSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEcC-CCcH----HHHHHHHHHhcCCCccCCCcccccccHHHHHHHhhcCCCCCCC
Q ss_pred --HhhhcCCEEEEecCccCcccccCCCCCCCC-------------CCcEEEEeC
Q 011590 273 --LAIGQCDVALVVGARLNWLLHFGEPPKWSK-------------DVKFVLVDV 311 (482)
Q Consensus 273 --~~l~~aDlvl~iG~~~~~~~~~g~~~~~~~-------------~~~ii~id~ 311 (482)
.-+++||+||++|+++.+. .+ +.|+|.||+
T Consensus 193 ~~~d~~~ad~il~~G~n~~~~---------~p~~~~~~~~~a~~~G~klividP 237 (765)
T 2vpz_A 193 EPIDWENARYIVLIGHHIGED---------THNTQLQDFALALKNGAKVVVVDP 237 (765)
T ss_dssp CCCCGGGCSEEEEESCCBTTB---------CCHHHHHHHHHHHHTTCEEEEECS
T ss_pred CccccccCCEEEEEeCChhhc---------CChHHHHHHHHHHHCCCEEEEECC
No 206
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=29.49 E-value=1.2e+02 Score=24.37 Aligned_cols=45 Identities=7% Similarity=0.185 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
-.+++.+.|.+.+--++++...+........+..+++..++|++.
T Consensus 28 G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~ 72 (126)
T 2xzm_U 28 GLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVS 72 (126)
T ss_dssp SHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred cHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEE
Confidence 456778888888777888777774345567899999999999985
No 207
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=29.36 E-value=19 Score=35.25 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccch--HHHHhh-hcCCE
Q 011590 206 SDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATA--ARSLAI-GQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~--~~~~~l-~~aDl 280 (482)
..++++.+.+++ .+|++|+.|......+..+.+.+..++.|+.+..-. +. +.+|-.-.. ....+. .++|+
T Consensus 17 g~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~---~v--~~~p~~~~v~~~~~~~~~~~~D~ 91 (383)
T 3ox4_A 17 GSLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYD---GV--MPNPTVTAVLEGLKILKDNNSDF 91 (383)
T ss_dssp THHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEE---EE--CSSCBHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEEC---Cc--cCCCCHHHHHHHHHHHHhcCcCE
Confidence 456666666654 478999999876555567778888888888764211 11 122322111 111222 47999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
||+||
T Consensus 92 IIavG 96 (383)
T 3ox4_A 92 VISLG 96 (383)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99999
No 208
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=28.33 E-value=1.5e+02 Score=25.14 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=47.1
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcCh-HHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~~-~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+-+...+-..+.|+++||.|-+++-+.+= ..-+..+. ... +. ...-|+++ +-|..+
T Consensus 17 SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~------------------~~a--~~-~g~~ViIa--~AG~aa 73 (169)
T 3trh_A 17 SDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFV------------------ENA--DN-RGCAVFIA--AAGLAA 73 (169)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHH------------------HHH--HH-TTEEEEEE--EECSSC
T ss_pred HhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHH------------------HHH--Hh-CCCcEEEE--ECChhh
Confidence 34567888899999999999999988542 11111111 101 11 12335555 345678
Q ss_pred hHHHHHHhhhCCCcEEEEeCC
Q 011590 91 GLAGLSNGMINTWPIVMISGS 111 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~ 111 (482)
.++++..+.. ..|||-+--.
T Consensus 74 ~LpgvvA~~t-~~PVIgVP~~ 93 (169)
T 3trh_A 74 HLAGTIAAHT-LKPVIGVPMA 93 (169)
T ss_dssp CHHHHHHHTC-SSCEEEEECC
T ss_pred hhHHHHHhcC-CCCEEEeecC
Confidence 8888888776 5788877643
No 209
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.61 E-value=28 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCCEEEEcCCccccccHH-HHHHHHHHhCCc
Q 011590 219 KKPLIVFGKGAAYARAEG-ELKKLVESTGIP 248 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~-~l~~lae~~g~p 248 (482)
+|.++++|.|...|...+ .+++.++..|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 678899999987775555 788999999987
No 210
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=27.36 E-value=19 Score=34.88 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCc-cccccHHHHHHHHHHhCCcEe---eCCCCCCCCCC-CCCcccchHHHHhhhcCCE
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGA-AYARAEGELKKLVESTGIPFL---PTPMGKGLLPD-THPLAATAARSLAIGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~-~~~~~~~~l~~lae~~g~pv~---~t~~~~g~~~~-~hp~~~G~~~~~~l~~aDl 280 (482)
+..+++.+.+..+.--+|..|-|. -.+++...|.+.++.+++.++ +.|.. +.. ..|+..-...+.+.+.+|.
T Consensus 94 e~~d~I~~~le~~d~~~i~as~GGGTGSG~ap~la~~~ke~g~lt~~Vvt~Pf~---~Eg~~~~~nA~~~l~~L~e~~D~ 170 (353)
T 1w5f_A 94 ESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFY---FEGPERLKKAIEGLKKLRKHVDT 170 (353)
T ss_dssp HTHHHHHHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHccCCEEEEEeccCCCccccHHHHHHHHHHHhCCcEEEEEeCCcc---cccchhHHHHHHHHHHHHhhCCE
Confidence 345566666667776666666333 236788889999999997654 33321 100 0122222223467789999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
+|+|-
T Consensus 171 ~ivid 175 (353)
T 1w5f_A 171 LIKIS 175 (353)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99994
No 211
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=27.24 E-value=58 Score=30.93 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEe
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~ 56 (482)
..-+.+++.|+++||+..|.+-|...+.-...|.+.++.+|.
T Consensus 81 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~i~vvg 122 (320)
T 1pfk_A 81 NIRAVAIENLKKRGIDALVVIGGDGSYMGAMRLTEMGFPCIG 122 (320)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHhhCCCEEE
Confidence 367899999999999999999998877777777765555554
No 212
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=27.23 E-value=58 Score=30.91 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEe
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~ 56 (482)
..-+.+++.|+++||+..|.+-|...+.-...|.+.++.+|.
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~~L~~~~i~vvg 121 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHGALQLTRHGFNSIG 121 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHhCCCEEE
Confidence 367899999999999999999998877777777765555553
No 213
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=27.16 E-value=81 Score=29.62 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCccc
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA 267 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~ 267 (482)
++....+.++.|.+.+++..++|... +.....+..++++.++|++........+...+|+++
T Consensus 56 ~~~~~~~~~~~li~~~~v~~iiG~~~--s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~ 117 (368)
T 4eyg_A 56 IPDNTKRLAQELIVNDKVNVIAGFGI--TPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIV 117 (368)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEECSS--HHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEE
T ss_pred CHHHHHHHHHHHHhcCCcEEEECCCc--cHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEE
Confidence 33434445555555567778887654 456677889999999999976543322333355544
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=26.94 E-value=1e+02 Score=30.53 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCC
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~ 254 (482)
..+.+++..|....+-+++++....+..+.+.+..+++..|+|++....
T Consensus 112 Tt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~ 160 (433)
T 3kl4_A 112 TTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPN 160 (433)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTT
T ss_pred HHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccc
Confidence 4677788888877777778887777778889999999999999986543
No 215
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=26.93 E-value=3.3e+02 Score=24.10 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCc-----EEecCchHHHHHHHH-HHHhHhCCcEE
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVR-----FIAFHNEQSAGYAAS-AYGYLTGKPGI 79 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~-----~v~~~~E~~A~~~A~-g~ar~tgk~~v 79 (482)
..++..+++.|.+.|-+++.-+-|.. ...+.+++.+.+++ ++........++-+. -+-+...+|-+
T Consensus 112 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 191 (289)
T 3g85_A 112 YKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKA 191 (289)
T ss_dssp HHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcE
Confidence 35788899999999988766665532 33455566666654 233332323222222 22122346788
Q ss_pred EEEcCChhhHhhHHHHHHhh
Q 011590 80 LLTVSGPGCVHGLAGLSNGM 99 (482)
Q Consensus 80 ~~~t~GpG~~N~~~ai~~A~ 99 (482)
+++.+..-+..++.++.++-
T Consensus 192 i~~~~d~~a~g~~~al~~~g 211 (289)
T 3g85_A 192 LFCNSDSIALGVISVLNKRQ 211 (289)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EEEcCCHHHHHHHHHHHHcC
Confidence 88887766666666666543
No 216
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=26.90 E-value=32 Score=33.54 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=37.7
Q ss_pred CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc--hHHHHhh-hcCCEEEEec
Q 011590 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT--AARSLAI-GQCDVALVVG 285 (482)
Q Consensus 218 a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G--~~~~~~l-~~aDlvl~iG 285 (482)
.+|++|+.|......+..+.+.+..+..|+.+..-... +.+|-.-- .....+. .++|+||+||
T Consensus 31 ~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~-----~~~p~~~~v~~~~~~~~~~~~d~IIavG 96 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGV-----VPNPTITVVKEGLGVFQNSGADYLIAIG 96 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBC-----CSSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCc-----cCCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 57888888877755566777877777778776421111 22232211 1122222 4799999998
No 217
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=26.88 E-value=10 Score=27.52 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=35.5
Q ss_pred cCCcHHHHH------HHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchHH
Q 011590 12 AQIDGNTLA------AKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQS 62 (482)
Q Consensus 12 ~~~~~~~~l------~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~~ 62 (482)
..++++|++ ++.|.++|+ .+||+||.....|-+++...|+..=....|.+
T Consensus 7 ~d~tI~eiv~~~P~~~~vf~~~G~-~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 7 KDMTFAQALQTHPGVAGVLRSYNL-GCIGCMGAQNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp SSSBHHHHHHHCTHHHHHHHHTTG-GGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHCHHHHHHHHHcCC-CCCCCCccccccHHHHHHHcCCCHHHHHHHHH
Confidence 456677765 567999999 48999998888888888877775433333333
No 218
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=26.81 E-value=3.5e+02 Score=24.38 Aligned_cols=84 Identities=6% Similarity=0.026 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHhc--CCCEEEecCCcC--------hHHHHHHHHhCCCcEEec---CchHHHHHHHHHHHh-HhCCcEEE
Q 011590 15 DGNTLAAKSLSLF--GATHMFGVVGIP--------VTSLANRAVQLGVRFIAF---HNEQSAGYAASAYGY-LTGKPGIL 80 (482)
Q Consensus 15 ~~~~~l~~~L~~~--Gv~~vFgvpG~~--------~~~l~~al~~~~i~~v~~---~~E~~A~~~A~g~ar-~tgk~~v~ 80 (482)
.++..+++.|.+. |-+.+.-+-|.. ...+.+++.+.+++++.. ......++-+.--.. ...++-++
T Consensus 107 ~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 186 (313)
T 2h3h_A 107 QAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAF 186 (313)
T ss_dssp HHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHHHHHHHHHHCcCceEE
Confidence 4778888999988 888776665531 223455555678776432 222222222211111 22357788
Q ss_pred EEcCChhhHhhHHHHHHh
Q 011590 81 LTVSGPGCVHGLAGLSNG 98 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A 98 (482)
++.+...+..++.++.++
T Consensus 187 ~~~~d~~a~g~~~al~~~ 204 (313)
T 2h3h_A 187 FGVYAYNGPAQALVVKNA 204 (313)
T ss_dssp EECSTTHHHHHHHHHHHT
T ss_pred EEcCCCccHHHHHHHHHc
Confidence 888776555555555544
No 219
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=26.80 E-value=1.3e+02 Score=27.97 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCC
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~ 254 (482)
+++...+.++.|.+.+++..++|... +.....+.+++++.++|++....
T Consensus 56 ~~~~~~~~~~~l~~~~~v~~iig~~~--s~~~~~~~~~~~~~~iP~v~~~~ 104 (358)
T 3hut_A 56 DADQARTIARAFVDDPRVVGVLGDFS--STVSMAAGSIYGKEGMPQLSPTA 104 (358)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEECSS--HHHHHHHHHHHHHHTCCEEESSC
T ss_pred CHHHHHHHHHHHhccCCcEEEEcCCC--cHHHHHHHHHHHHCCCcEEecCC
Confidence 33444455566665688888888654 45566778899999999997543
No 220
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.51 E-value=2.9e+02 Score=25.36 Aligned_cols=86 Identities=13% Similarity=0.048 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcE----E-ecCchHHHHHHH-HHHHhHhCCcEE
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRF----I-AFHNEQSAGYAA-SAYGYLTGKPGI 79 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~----v-~~~~E~~A~~~A-~g~ar~tgk~~v 79 (482)
..++...++.|.+.|-+.+.-+-|.. ...+.+++.+.++++ + ........++-+ .-+-....+|-+
T Consensus 166 ~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~a 245 (338)
T 3dbi_A 166 KQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSA 245 (338)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 35788899999999998877666532 334556666666543 2 222222222222 222223356888
Q ss_pred EEEcCChhhHhhHHHHHHhh
Q 011590 80 LLTVSGPGCVHGLAGLSNGM 99 (482)
Q Consensus 80 ~~~t~GpG~~N~~~ai~~A~ 99 (482)
+++.+..-+..++.++.++-
T Consensus 246 i~~~nd~~A~g~~~al~~~G 265 (338)
T 3dbi_A 246 LVASNDDMAIGAMKALHERG 265 (338)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EEECChHHHHHHHHHHHHcC
Confidence 88887665555566665543
No 221
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=26.41 E-value=3.5e+02 Score=24.13 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC---------hHHHHHHHHhCCCcE----E-ecCchHHHHHHHHHHHh-HhCCcEE
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP---------VTSLANRAVQLGVRF----I-AFHNEQSAGYAASAYGY-LTGKPGI 79 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~---------~~~l~~al~~~~i~~----v-~~~~E~~A~~~A~g~ar-~tgk~~v 79 (482)
.++...++.|.+.|-+.+.-+.|.. ...+.+++.+.++++ + ........++-+.-... ...+|-+
T Consensus 119 ~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a 198 (289)
T 2fep_A 119 QAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTA 198 (289)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCE
Confidence 4788899999999988765554432 234566676666543 2 22222222222211111 1246778
Q ss_pred EEEcCChhhHhhHHHHHHh
Q 011590 80 LLTVSGPGCVHGLAGLSNG 98 (482)
Q Consensus 80 ~~~t~GpG~~N~~~ai~~A 98 (482)
+++.+..-+..++.++.++
T Consensus 199 i~~~~d~~A~g~~~al~~~ 217 (289)
T 2fep_A 199 ILSATDEMALGIIHAAQDQ 217 (289)
T ss_dssp EEESSHHHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHc
Confidence 8887665455555555543
No 222
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=26.18 E-value=1.3e+02 Score=22.86 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.+++.+.|++.+--+++.-..+.. ...+.+..+|+..++|++.
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHHcCCCEEE
Confidence 567778888877777777777743 4566789999999999985
No 223
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=26.06 E-value=87 Score=28.94 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 201 ~~~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
..|++..+.++.+.+++.+=++|++-.... ....+.|.++|+..|+||..
T Consensus 194 ~eps~~~l~~l~~~ik~~~v~~if~e~~~~-~~~~~~l~~~a~~~g~~v~~ 243 (282)
T 3mfq_A 194 SEVANSDMIETVNLIIDHNIKAIFTESTTN-PERMKKLQEAVKAKGGQVEV 243 (282)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCEEECBTTSC-THHHHHHHHHHHTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-hHHHHHHHHHHHhcCCceEE
Confidence 457789999999999999989999987663 45677888999999999875
No 224
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=26.03 E-value=1.3e+02 Score=22.90 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
.+++.+.|++.+--+++.-..+.. .....+..+|+..++|++.-
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~vp~~~~ 67 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKV 67 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhHHHHhcCceeEEEEeccccc-cchhhhcccccccCCCeeee
Confidence 567778888888778888777743 35667899999999999853
No 225
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=25.83 E-value=57 Score=27.93 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHH-----HhCCcEee
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE-----STGIPFLP 251 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae-----~~g~pv~~ 251 (482)
+.++++++.|.+++ -++++|.|....-+...-.+|.. +.|.|+..
T Consensus 29 ~~~~~~~~~i~~a~-~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~ 78 (196)
T 2yva_A 29 RAAMTLVQSLLNGN-KILCCGNGTSAANAQHFAASMINRFETERPSLPAIA 78 (196)
T ss_dssp HHHHHHHHHHHTTC-CEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEE
T ss_pred HHHHHHHHHHHcCC-EEEEEeCchhhHHHHHHHHHHhccccccCCCCceEe
Confidence 67889999999885 57788888633222222233432 56666653
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.60 E-value=1.6e+02 Score=29.15 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.....++..+....+.+.+++....+..+.+.+..+++..|+|++...
T Consensus 113 T~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~ 160 (425)
T 2ffh_A 113 TTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 160 (425)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecC
Confidence 456777888887778888888888777777788899999999999754
No 227
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=25.46 E-value=34 Score=33.46 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC-------CcccchHHHHhhhc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDTH-------PLAATAARSLAIGQ 277 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h-------p~~~G~~~~~~l~~ 277 (482)
+..+++.+++..+.--+|..|-|.- .+++...+.++++.+|+..+. +++.-. |+..-...+.+.+.
T Consensus 90 e~~d~Ir~~le~~D~ffItagmGGGTGSGaapvIaeiake~g~Ltvs------VVt~Pf~~Eg~~r~yNA~lgl~~L~e~ 163 (396)
T 4dxd_A 90 ESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKEMGALTVG------VVTRPFSFEGRKRQTQAAAGVEAMKAA 163 (396)
T ss_dssp HTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEE------EEEECCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCCccccHHHHHHHHHHhcCCceEE------EEeCCccccchHHHHHHHHHHHHHHhh
Confidence 4456777777788876666664433 357778899999999976442 222210 11111123467789
Q ss_pred CCEEEEec
Q 011590 278 CDVALVVG 285 (482)
Q Consensus 278 aDlvl~iG 285 (482)
+|.+|+|-
T Consensus 164 vD~vIvId 171 (396)
T 4dxd_A 164 VDTLIVIP 171 (396)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEc
Confidence 99999995
No 228
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=25.33 E-value=1.4e+02 Score=28.87 Aligned_cols=91 Identities=7% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHHHHHhc--CCCEEEecCCcChHHHHHH-HHhCCCc--E-Eec--CchHHHHHHHHHH---Hh--HhCCcEEEEEcC
Q 011590 18 TLAAKSLSLF--GATHMFGVVGIPVTSLANR-AVQLGVR--F-IAF--HNEQSAGYAASAY---GY--LTGKPGILLTVS 84 (482)
Q Consensus 18 ~~l~~~L~~~--Gv~~vFgvpG~~~~~l~~a-l~~~~i~--~-v~~--~~E~~A~~~A~g~---ar--~tgk~~v~~~t~ 84 (482)
.-|++.|++. |++...+++|.+. .+.+. +..-+++ + +.. ..+.-+..++... .+ ..-||-+++++.
T Consensus 44 a~li~~l~~~~~~~~~~~~~tG~h~-~m~~~~~~~~~i~~~~~l~v~~~~~~~~~~~~~~~~~l~~~l~~~kPD~Vi~~g 122 (403)
T 3ot5_A 44 APLVLALEKEPETFESTVVITAQHR-EMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHG 122 (403)
T ss_dssp HHHHHHHHTCTTTEEEEEEECC------CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred HHHHHHHHhCCCCCcEEEEEecCcH-HHHHHHHHhcCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3467888887 6888999999763 22222 2223331 1 111 1222222222232 22 235899999885
Q ss_pred ChhhHhhHHHHHHhhhCCCcEEEEeCC
Q 011590 85 GPGCVHGLAGLSNGMINTWPIVMISGS 111 (482)
Q Consensus 85 GpG~~N~~~ai~~A~~~~~Pvl~i~g~ 111 (482)
++. ..+.+...|+..++|++++-+.
T Consensus 123 d~~--~~l~~~laA~~~~IPv~h~~ag 147 (403)
T 3ot5_A 123 DTT--TSFAAGLATFYQQKMLGHVEAG 147 (403)
T ss_dssp TCH--HHHHHHHHHHHTTCEEEEESCC
T ss_pred Cch--hHHHHHHHHHHhCCCEEEEECC
Confidence 432 3355556788899999887653
No 229
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=25.20 E-value=1.1e+02 Score=28.99 Aligned_cols=48 Identities=2% Similarity=-0.027 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCC
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~ 254 (482)
++...+.++.|..-++...++|... +.....+..++++.++|++....
T Consensus 56 ~~~a~~~~~~li~~~~v~~iiG~~~--s~~~~a~~~~~~~~~ip~i~~~~ 103 (375)
T 3i09_A 56 ADIAASKAREWMDRGGLDLLVGGTN--SATALSMNQVAAEKKKVYINIGA 103 (375)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECSC--HHHHHHHHHHHHHHTCEEEECSC
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCC--cHHHHHHHHHHHHcCceEEEeCC
Confidence 3434445555555568888888654 56667889999999999997644
No 230
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=25.18 E-value=1.1e+02 Score=26.04 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=44.8
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcC-hHHHHHHHH----hCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCCh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIP-VTSLANRAV----QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGP 86 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~-~~~l~~al~----~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~Gp 86 (482)
+-+...+-.++.|+++||++-+++-+.+ ...-+..+. +++++ |+|+ +-
T Consensus 22 SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~-------------------------ViIa--~A 74 (170)
T 1xmp_A 22 SDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLK-------------------------VIIA--GA 74 (170)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCC-------------------------EEEE--EE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCc-------------------------EEEE--EC
Confidence 3446788889999999999999998853 222222221 12222 3343 33
Q ss_pred hhHhhHHHHHHhhhCCCcEEEEeCC
Q 011590 87 GCVHGLAGLSNGMINTWPIVMISGS 111 (482)
Q Consensus 87 G~~N~~~ai~~A~~~~~Pvl~i~g~ 111 (482)
|..+.++++..+.. ..|||-+.-.
T Consensus 75 G~aa~LpgvvA~~t-~~PVIgVP~~ 98 (170)
T 1xmp_A 75 GGAAHLPGMVAAKT-NLPVIGVPVQ 98 (170)
T ss_dssp ESSCCHHHHHHTTC-CSCEEEEEEC
T ss_pred CchhhhHHHHHhcc-CCCEEEeeCC
Confidence 55677777777765 6777766644
No 231
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=25.08 E-value=35 Score=33.32 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCC-------CcccchHHHHhhhc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDTH-------PLAATAARSLAIGQ 277 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~h-------p~~~G~~~~~~l~~ 277 (482)
+..+++.+.+..+.--+|..|-|.- .+++...|.++++.++++++. +++.-. |++.-...+.+.+.
T Consensus 84 e~~d~Ir~~le~~d~~fi~as~GGGTGSG~ap~laela~e~g~ltvs------Vv~~Pf~~Eg~~~~~nA~l~l~~L~e~ 157 (382)
T 1rq2_A 84 DAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVG------VVTRPFSFEGKRRSNQAENGIAALRES 157 (382)
T ss_dssp HTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEE------EEEECCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEE------EEecCcccccchHHHHHHHHHHHHHHh
Confidence 3456666777778876666664432 257778899999999987653 222110 11111123467789
Q ss_pred CCEEEEec
Q 011590 278 CDVALVVG 285 (482)
Q Consensus 278 aDlvl~iG 285 (482)
+|.+|+|-
T Consensus 158 ~D~~ivid 165 (382)
T 1rq2_A 158 CDTLIVIP 165 (382)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEe
Confidence 99999995
No 232
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=24.93 E-value=1.2e+02 Score=24.85 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCEEEEcCCccc----cccHHHHHHHHHHhCCcEeeC
Q 011590 209 DKAVSLLKEAKKPLIVFGKGAAY----ARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 209 ~~~~~~L~~a~rpvil~G~g~~~----~~~~~~l~~lae~~g~pv~~t 252 (482)
+.+.+.....+.|+|++|..... .-..+.+.++++.+++|++.+
T Consensus 113 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 113 QLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp HHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEe
Confidence 33344444567899999987753 234577899999999998754
No 233
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=24.88 E-value=60 Score=31.88 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC--CCCEEEEc-CCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhh-cCCEEEE
Q 011590 208 IDKAVSLLKEA--KKPLIVFG-KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIG-QCDVALV 283 (482)
Q Consensus 208 ~~~~~~~L~~a--~rpvil~G-~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~-~aDlvl~ 283 (482)
++++.+.+++- +|++|+.| ......+..+.+.+..+..|+.+..- .+.-|+-.--.+......+.+ ++|+||+
T Consensus 31 l~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f---~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 31 IPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEV---SGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp GGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEE---CCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEe---cCccCCCCHHHHHHHHHHHHhcCCCEEEE
Q ss_pred ec
Q 011590 284 VG 285 (482)
Q Consensus 284 iG 285 (482)
||
T Consensus 108 vG 109 (407)
T 1vlj_A 108 VG 109 (407)
T ss_dssp EE
T ss_pred eC
No 234
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=24.77 E-value=74 Score=34.16 Aligned_cols=138 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCC-----CCEEEE----cCCccccccHHHHHHHHHHhCCcEe-eCCCCCCCCCCCCCcccchH----
Q 011590 205 NSDIDKAVSLLKEAK-----KPLIVF----GKGAAYARAEGELKKLVESTGIPFL-PTPMGKGLLPDTHPLAATAA---- 270 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~-----rpvil~----G~g~~~~~~~~~l~~lae~~g~pv~-~t~~~~g~~~~~hp~~~G~~---- 270 (482)
+++++.+++.|++.+ .-+.+. ++..........+.+|+..+|..+- ......+.-..-.+..+|..
T Consensus 87 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~g~~~~~~~~~~~f~~~~G~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (780)
T 1eu1_A 87 DEALDLVARELKRVQESYGPTGTFGGSYGWKSPGRLHNCQVLMRRALNLAGGFVNSSGDYSTAAAQIIMPHVMGTLEVYE 166 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEECCCCCCCCCCSSCCHHHHHHHHHHHHTCCBEEESCSSSTTHHHHHHHHTSSCCTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEecccCCcccccccchhHHHHHHHHhcCCCcCCCCCcccchhhhccCceeccccccC
Q ss_pred ----HHHhhhcCCEEEEecCccCcccccCCCCCCC-----------CCCcEEEEeCCchhhcccCCceeEe----ccHHH
Q 011590 271 ----RSLAIGQCDVALVVGARLNWLLHFGEPPKWS-----------KDVKFVLVDVCKEEIELRKPHLGLV----GDAKK 331 (482)
Q Consensus 271 ----~~~~l~~aDlvl~iG~~~~~~~~~g~~~~~~-----------~~~~ii~id~d~~~~~~~~~~~~i~----~D~~~ 331 (482)
...-+++||+||++|+++.+.....+..... .++|+|.||+..........|..+. .|...
T Consensus 167 ~~~~~~~d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~irPGtD~AL 246 (780)
T 1eu1_A 167 QQTAWPVVVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVSPRPQTDVAL 246 (780)
T ss_dssp CCSCHHHHHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEECCCTTCHHHH
T ss_pred CCCCcHhHHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEeeeCCCCHHHH
Q ss_pred HHHHHHHhhhc
Q 011590 332 VLEMINKEIKD 342 (482)
Q Consensus 332 ~l~~L~~~l~~ 342 (482)
++.-+...+++
T Consensus 247 ~~am~~~ii~e 257 (780)
T 1eu1_A 247 MLGMAHTLYSE 257 (780)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
No 235
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=24.73 E-value=1.5e+02 Score=24.54 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=28.2
Q ss_pred CCCCEEEEcCCcccc---ccHHHHHHHHHHhCCcEeeCC
Q 011590 218 AKKPLIVFGKGAAYA---RAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 218 a~rpvil~G~g~~~~---~~~~~l~~lae~~g~pv~~t~ 253 (482)
.+.|+++++.-.... ...+.+.++++.+++|++.+.
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEe
Confidence 578999999877532 346788999999999988654
No 236
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=24.62 E-value=1e+02 Score=26.50 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=43.9
Q ss_pred cCCcHHHHHHHHHHhcCCCEEEecCCcC-hHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHh
Q 011590 12 AQIDGNTLAAKSLSLFGATHMFGVVGIP-VTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVH 90 (482)
Q Consensus 12 ~~~~~~~~l~~~L~~~Gv~~vFgvpG~~-~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N 90 (482)
+-+...+-.++.|+++||++-+++-+.+ ...-+..+. ..+..| | .-|+|+ +-|..+
T Consensus 24 SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~------------------~~a~~~--g-~~ViIa--~AG~aa 80 (183)
T 1o4v_A 24 SDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYA------------------KNAEER--G-IEVIIA--GAGGAA 80 (183)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHH------------------HHTTTT--T-CCEEEE--EEESSC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHH------------------HHHHhC--C-CcEEEE--ecCccc
Confidence 3455777888899999999888888753 222222211 000111 1 124444 335567
Q ss_pred hHHHHHHhhhCCCcEEEEeCCC
Q 011590 91 GLAGLSNGMINTWPIVMISGSC 112 (482)
Q Consensus 91 ~~~ai~~A~~~~~Pvl~i~g~~ 112 (482)
.++++..+. -..|||-+.-..
T Consensus 81 ~LpgvvA~~-t~~PVIgVP~~~ 101 (183)
T 1o4v_A 81 HLPGMVASI-THLPVIGVPVKT 101 (183)
T ss_dssp CHHHHHHHH-CSSCEEEEEECC
T ss_pred ccHHHHHhc-cCCCEEEeeCCC
Confidence 777777766 457887766543
No 237
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.62 E-value=3.6e+02 Score=23.84 Aligned_cols=151 Identities=11% Similarity=-0.024 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHh-c-CCC-----EEEecCC---c-----ChHHHHHHHHhC-CCcEEe---cC-chHHHHHHHHHHHhHh
Q 011590 15 DGNTLAAKSLSL-F-GAT-----HMFGVVG---I-----PVTSLANRAVQL-GVRFIA---FH-NEQSAGYAASAYGYLT 74 (482)
Q Consensus 15 ~~~~~l~~~L~~-~-Gv~-----~vFgvpG---~-----~~~~l~~al~~~-~i~~v~---~~-~E~~A~~~A~g~ar~t 74 (482)
.++..+++.|.+ + |-+ .+.-+-| . ....+.+++.+. +++++. .. ++..+.-++.-+-...
T Consensus 114 ~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (293)
T 3l6u_A 114 MIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSG 193 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHhC
Confidence 467777777777 3 655 5544433 2 233455666666 777653 11 2222222222222223
Q ss_pred CCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeCCCCcccCCCCCCCCcCHhhhh-ccccceeeecCCcCcHHHHHHH
Q 011590 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV-KPFSKFAVKAKDITEVPKCVAQ 153 (482)
Q Consensus 75 gk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~-~~~~k~~~~~~~~~~~~~~l~~ 153 (482)
.+|-++++.+..-+..++.++.++-...+.|+-+-+.. . ...++ .+..-.+.. .+++++-...-+
T Consensus 194 ~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~~-----------~--~~~~~~~~~~lttv~-~~~~~~g~~a~~ 259 (293)
T 3l6u_A 194 IPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGNR-----------A--ILEAVDMKSMDATVV-QSAEEMMKVAFS 259 (293)
T ss_dssp CCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECCH-----------H--HHHHHHTTSSCEEEE-CCHHHHHHHHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEecCCH-----------H--HHHHHHcCCccEEEe-CCHHHHHHHHHH
Confidence 56788888877666666666666554433333222111 0 01111 111111112 233333333333
Q ss_pred HHHHhhcCCCceEEEEcCcchhcccc
Q 011590 154 VLERAVSGRPGGCYLDLPTDVLHQTI 179 (482)
Q Consensus 154 A~~~a~~~~~gPv~l~iP~dv~~~~~ 179 (482)
.+...+.++..|-.+.+|..+.....
T Consensus 260 ~l~~~i~g~~~~~~~~~~~~lv~r~~ 285 (293)
T 3l6u_A 260 ALKLHTKNKKIPDRFYTYSYLYDGSR 285 (293)
T ss_dssp HHHHHHTTCCCCSEEEECCEEEC---
T ss_pred HHHHHHcCCCCCceeecccEeecccc
Confidence 33334455556778888888765553
No 238
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=24.41 E-value=37 Score=33.15 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCccc-c--------hHHHHhh
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-T--------AARSLAI 275 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~-G--------~~~~~~l 275 (482)
+..+++.+.+..+.--+|..|-|.- .+++...|.++++.+|++++. +++. |+.. | ...+.+.
T Consensus 84 e~~d~Ir~~le~~D~ffI~asmGGGTGSG~apvla~~ake~g~ltvs------Vvt~--Pf~~Eg~~r~~nA~l~l~~L~ 155 (382)
T 2vxy_A 84 ESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVG------VVTR--PFTFEGRKRQLQAAGGISAMK 155 (382)
T ss_dssp HTHHHHHHHHTTCSEEEEEEESSSSHHHHHHHHHHHHHHHTTCEEEE------EEEE--CCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEeccCCCCCCcHHHHHHHHHHHhCCCeEE------EEeC--CcccccchhHHHHHHHHHHHH
Confidence 3456666777778776666664432 357788899999999987653 2221 2211 2 1234677
Q ss_pred hcCCEEEEec
Q 011590 276 GQCDVALVVG 285 (482)
Q Consensus 276 ~~aDlvl~iG 285 (482)
+.+|.+|+|-
T Consensus 156 e~~D~~ivid 165 (382)
T 2vxy_A 156 EAVDTLIVIP 165 (382)
T ss_dssp HHCSEEEEEE
T ss_pred HhCCEEEEEc
Confidence 8999999995
No 239
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=24.33 E-value=60 Score=24.09 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.-|++++=+.. ...+.++++|+..|+||+.+.
T Consensus 16 ~aP~VvAKG~~---~~A~~I~~~A~e~~VPi~e~~ 47 (83)
T 3bzy_B 16 PLPLVIETGKD---AKALQIIKLAELYDIPVIEDI 47 (83)
T ss_dssp SSCEEEEEEET---HHHHHHHHHHHHTTCCEEECH
T ss_pred CCCEEEEEeCc---HHHHHHHHHHHHcCCCEEeCH
Confidence 35666663332 457789999999999999764
No 240
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=24.27 E-value=79 Score=24.93 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCC-----cChHHHHHHHHhCCCcE
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVG-----IPVTSLANRAVQLGVRF 54 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG-----~~~~~l~~al~~~~i~~ 54 (482)
...++..|++.+.+.||+.|.-=.| +.+..+.+++.+.|++|
T Consensus 66 A~~vG~llA~ra~~~GI~~vvfDrgg~~yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 66 ARQVGRALAEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHHHHHHHHHHHHTTTCCBCEEECTTSCSCSSTTHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHcCCCC
Confidence 3458899999999999986654333 57888899888888875
No 241
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=24.22 E-value=91 Score=25.35 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
-.+++.+.|++.+--++++...+........+..+|+..|+|++.
T Consensus 36 G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 36 GANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp SHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred CchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 356677788777777777777765334567899999999999874
No 242
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=24.21 E-value=1.2e+02 Score=24.57 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEe
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~ 56 (482)
....+++.+.+.|++.+.-.+|.....+.+.+++.|++++.
T Consensus 89 ~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 89 LTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVA 129 (144)
T ss_dssp HHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEEEc
Confidence 44556677778889888888888877888877778888775
No 243
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=24.04 E-value=71 Score=25.35 Aligned_cols=42 Identities=19% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEecCC-----cChHHHHHHHHhCCCcE
Q 011590 13 QIDGNTLAAKSLSLFGATHMFGVVG-----IPVTSLANRAVQLGVRF 54 (482)
Q Consensus 13 ~~~~~~~l~~~L~~~Gv~~vFgvpG-----~~~~~l~~al~~~~i~~ 54 (482)
...++..|++.+.+.||+.|.-=-| +.+..+.+++.+.|++|
T Consensus 70 A~~vG~llA~Ral~~GI~~vvfDrgg~~yhGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 70 AAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 116 (116)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEECTTSCSSSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHhCCCC
Confidence 3458899999999999986654333 56778888888888764
No 244
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.93 E-value=1.7e+02 Score=25.57 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHHHHHHh-----cCCCEEEecCCcChHH--HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChh-
Q 011590 16 GNTLAAKSLSL-----FGATHMFGVVGIPVTS--LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG- 87 (482)
Q Consensus 16 ~~~~l~~~L~~-----~Gv~~vFgvpG~~~~~--l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG- 87 (482)
--+.+++.|.+ .+-=++||+-++.... +...|.+-++..+... +... + .+....-++--++++.|..|
T Consensus 43 ~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~-~~~~--~-~~~~~~~~~~DlvI~iS~SG~ 118 (220)
T 3etn_A 43 AYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLH-PSEA--Q-HGDLGILQENDLLLLISNSGK 118 (220)
T ss_dssp HHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHHHTTCCEEECC-TTGG--G-BTGGGGCCTTCEEEEECSSSC
T ss_pred HHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeC-CHHH--H-HhhhccCCCCCEEEEEcCCCC
Confidence 44566778887 6666777775554332 2233445566555442 1111 1 11222222323555555555
Q ss_pred hHhhHHHHHHhhh--CCCcEEEEeCCCCc
Q 011590 88 CVHGLAGLSNGMI--NTWPIVMISGSCDQ 114 (482)
Q Consensus 88 ~~N~~~ai~~A~~--~~~Pvl~i~g~~~~ 114 (482)
....+.++..|.. .++++|.||+....
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s 147 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPDS 147 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTTS
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence 4566778888999 99999999987643
No 245
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Probab=23.87 E-value=36 Score=32.62 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccc-cccHHHHHHHHHHhCCcEee---CCCCCCCCCC-CCCcccchHHHHhhhcCCE
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAY-ARAEGELKKLVESTGIPFLP---TPMGKGLLPD-THPLAATAARSLAIGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~-~~~~~~l~~lae~~g~pv~~---t~~~~g~~~~-~hp~~~G~~~~~~l~~aDl 280 (482)
+..+++.+.+..+...+|..|-|.-. ++....+.++++.+++..+. .+.. +.. ..|++.-...+.+.+.+|.
T Consensus 80 e~~d~Ir~~~e~~D~l~i~~s~GGGTGSG~~~~ia~l~~e~g~lt~~Vv~~P~~---~eg~~~~ynA~~~l~~L~e~~D~ 156 (338)
T 2r75_1 80 EDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAKEMGILTVAVATLPFR---FEGPRKMEKALKGLEKLKESSDA 156 (338)
T ss_dssp HTHHHHHHHHSSCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG---GGCHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHccCCeeEEecccCCCcCCCchHHHHHHHHhcCCCEEEEeCCCcc---ccchhhHHHHHHHHHHHHhcCCe
Confidence 34566666777788888888755433 46677799999999976442 2211 100 0011111123456788999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
+++|-
T Consensus 157 ~ivid 161 (338)
T 2r75_1 157 YIVIH 161 (338)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99994
No 246
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=23.74 E-value=90 Score=29.88 Aligned_cols=83 Identities=10% Similarity=-0.027 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCEEEec-CCcChHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhHHHH
Q 011590 17 NTLAAKSLSLFGATHMFGV-VGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGL 95 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~~vFgv-pG~~~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~~ai 95 (482)
.+.+.+.+++ ++-|... |......+..++.+.|..|+....+......-+-.++..|...+.-+-.-||++|++..-
T Consensus 68 ~~~l~~~~~~--~DvVi~~~p~~~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~ 145 (365)
T 3abi_A 68 FDKLVEVMKE--FELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGR 145 (365)
T ss_dssp HHHHHHHHTT--CSEEEECCCGGGHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHH
T ss_pred HHHHHHHHhC--CCEEEEecCCcccchHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCCchHHHHHHH
Confidence 4556666654 5555554 444556788888788888887654433222234556666766665566789999999876
Q ss_pred HHhhhC
Q 011590 96 SNGMIN 101 (482)
Q Consensus 96 ~~A~~~ 101 (482)
.....+
T Consensus 146 ~~~~~~ 151 (365)
T 3abi_A 146 IFQELD 151 (365)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 655555
No 247
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=23.40 E-value=1.2e+02 Score=32.22 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC-----CCCEEEEcCCccccccHHHHHHHHHH-hCCcEeeCCC---------------CCCCCCCCC
Q 011590 205 NSDIDKAVSLLKEA-----KKPLIVFGKGAAYARAEGELKKLVES-TGIPFLPTPM---------------GKGLLPDTH 263 (482)
Q Consensus 205 ~~~~~~~~~~L~~a-----~rpvil~G~g~~~~~~~~~l~~lae~-~g~pv~~t~~---------------~~g~~~~~h 263 (482)
+++++.+++.|++. ..-+.+.|++.......-.+.+|++. +|.+.+.... |.+....+.
T Consensus 82 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~ 161 (723)
T 2nap_A 82 DEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTY 161 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCCCCCh
Q ss_pred CcccchHHHHhhhcCCEEEEecCcc
Q 011590 264 PLAATAARSLAIGQCDVALVVGARL 288 (482)
Q Consensus 264 p~~~G~~~~~~l~~aDlvl~iG~~~ 288 (482)
+ -+++||+||++|+++
T Consensus 162 ~---------d~~~ad~il~~G~n~ 177 (723)
T 2nap_A 162 A---------DIDQATCFFIIGSNT 177 (723)
T ss_dssp G---------GGGTCSEEEEESCCH
T ss_pred h---------hHhHCCEEEEEcCCh
No 248
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=23.38 E-value=1.2e+02 Score=24.69 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEe
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIA 56 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~ 56 (482)
....+++.+.+.|++.+.-.+|.....+.+.+++.|++++.
T Consensus 82 ~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 82 AAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp HHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEEc
Confidence 44445555666888888888887777777777777787774
No 249
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.38 E-value=92 Score=26.28 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEE
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl 282 (482)
.+.+.+++++++|.+++ -++++|.|... .....+.....++|.++..-. +.| ...+.+-|++|
T Consensus 22 l~~~~i~~~~~~i~~a~-~I~i~G~G~S~-~~A~~~~~~l~~~g~~~~~~~-------~~~--------~~~~~~~d~vI 84 (186)
T 1m3s_A 22 ISNEEADQLADHILSSH-QIFTAGAGRSG-LMAKSFAMRLMHMGFNAHIVG-------EIL--------TPPLAEGDLVI 84 (186)
T ss_dssp CCHHHHHHHHHHHHHCS-CEEEECSHHHH-HHHHHHHHHHHHTTCCEEETT-------STT--------CCCCCTTCEEE
T ss_pred cCHHHHHHHHHHHHcCC-eEEEEecCHHH-HHHHHHHHHHHhcCCeEEEeC-------ccc--------ccCCCCCCEEE
Confidence 46788999999999986 57788888642 334444444466888876531 111 12345678888
Q ss_pred EecC
Q 011590 283 VVGA 286 (482)
Q Consensus 283 ~iG~ 286 (482)
++-.
T Consensus 85 ~iS~ 88 (186)
T 1m3s_A 85 IGSG 88 (186)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8854
No 250
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=23.34 E-value=1.5e+02 Score=23.41 Aligned_cols=36 Identities=25% Similarity=0.523 Sum_probs=28.0
Q ss_pred CCCCEEEEcCCcccc---ccHHHHHHHHHHhCCcEeeCC
Q 011590 218 AKKPLIVFGKGAAYA---RAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 218 a~rpvil~G~g~~~~---~~~~~l~~lae~~g~pv~~t~ 253 (482)
.+.|+++++.-.... ...+.+.++++.+++|++.+.
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEEC
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEec
Confidence 478999999877532 346788999999999987654
No 251
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.18 E-value=82 Score=26.44 Aligned_cols=95 Identities=11% Similarity=0.051 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEE
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (482)
+.+.++++++.|.+++ -++++|.|.... ....+.....++|.++..-.. .+. ..+.+-|++|+
T Consensus 26 ~~~~i~~~~~~i~~a~-~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~~-------~~~--------~~~~~~d~vi~ 88 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAK-KIFIFGVGRSGY-IGRCFAMRLMHLGFKSYFVGE-------TTT--------PSYEKDDLLIL 88 (180)
T ss_dssp HHHHHHHHHHHHHHCS-SEEEECCHHHHH-HHHHHHHHHHHTTCCEEETTS-------TTC--------CCCCTTCEEEE
T ss_pred CHHHHHHHHHHHHhCC-EEEEEeecHHHH-HHHHHHHHHHHcCCeEEEeCC-------Ccc--------ccCCCCCEEEE
Confidence 4578999999999986 678889886432 344454445568888765321 111 23456788888
Q ss_pred ecCccCcccccCCCCC-CCCCCcEEEEeCCchh
Q 011590 284 VGARLNWLLHFGEPPK-WSKDVKFVLVDVCKEE 315 (482)
Q Consensus 284 iG~~~~~~~~~g~~~~-~~~~~~ii~id~d~~~ 315 (482)
+-.+-.....-.-... -..++++|-|..++..
T Consensus 89 iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s 121 (180)
T 1jeo_A 89 ISGSGRTESVLTVAKKAKNINNNIIAIVCECGN 121 (180)
T ss_dssp EESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG
T ss_pred EeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh
Confidence 8543221100000000 0246778878665543
No 252
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=23.11 E-value=1.4e+02 Score=24.90 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccc-------cccHHHHHHHHHHhCCcEee
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAY-------ARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~-------~~~~~~l~~lae~~g~pv~~ 251 (482)
..++++++.+++....+|+++..... ....+.++++|++.|++++.
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD 138 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLP 138 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEc
Confidence 45777888888777778888753221 12235688999999999885
No 253
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=23.07 E-value=33 Score=33.64 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCcc-ccccHHHHHHHHHHhCCcEee---CCCCCCCCCC-CCCcccchHHHHhhhcCCE
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLP---TPMGKGLLPD-THPLAATAARSLAIGQCDV 280 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~-~~~~~~~l~~lae~~g~pv~~---t~~~~g~~~~-~hp~~~G~~~~~~l~~aDl 280 (482)
+..+++.+.+..+.--+|..|-|.- .+++...|.++++.++++++. .+.. +.. ..|++.-...+.+.+.+|.
T Consensus 84 e~~d~I~~~le~~d~~fI~asmGGGTGSG~ap~lae~~ke~g~ltvsVv~~Pf~---~Eg~~r~ynA~~~l~~L~e~~D~ 160 (394)
T 2vaw_A 84 EDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFP---FEGRKRMQIADEGIRALAESVDS 160 (394)
T ss_dssp HTHHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEEEECCG---GGHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHhhCCEEEEEeecCCCccccHHHHHHHHHHHcCCcEEEEecCCcc---cccchhhHHHHHHHHHHHHhCCE
Confidence 3456666777777765566664432 257778899999999988653 2211 000 0111111123457789999
Q ss_pred EEEec
Q 011590 281 ALVVG 285 (482)
Q Consensus 281 vl~iG 285 (482)
+|+|-
T Consensus 161 ~ivid 165 (394)
T 2vaw_A 161 LITIP 165 (394)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99995
No 254
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=23.03 E-value=3.9e+02 Score=23.59 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcE----E-ecCchHHHHHHHHHHHh-HhCCcEEE
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRF----I-AFHNEQSAGYAASAYGY-LTGKPGIL 80 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~----v-~~~~E~~A~~~A~g~ar-~tgk~~v~ 80 (482)
.++...++.|.+.|-+.+.-+-|.. ...+.+++.+.++++ + ........++-+.-... ...+|-++
T Consensus 117 ~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 196 (292)
T 3k4h_A 117 TAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAI 196 (292)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEE
Confidence 4788899999999998776665532 234556666666542 2 22222222222222112 22467888
Q ss_pred EEcCChhhHhhHHHHHHhh
Q 011590 81 LTVSGPGCVHGLAGLSNGM 99 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A~ 99 (482)
++.+..-+..++.++.++-
T Consensus 197 ~~~~d~~a~g~~~al~~~g 215 (292)
T 3k4h_A 197 MATDDLIGLGVLSALSKKG 215 (292)
T ss_dssp EESSHHHHHHHHHHHHHTT
T ss_pred EEcChHHHHHHHHHHHHhC
Confidence 8887765666666666554
No 255
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=22.98 E-value=2.1e+02 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
.....++..+....+-+.+++....++...+.+..+++..|++++..
T Consensus 113 T~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~ 159 (295)
T 1ls1_A 113 TTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc
Confidence 35677777887777888899988876666667778899999999864
No 256
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=22.86 E-value=56 Score=31.49 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCcc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAA 230 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~ 230 (482)
..+++++++|+++++.||+.|.|+.
T Consensus 34 ~~i~~l~~~l~~a~~IvvlTGAGIS 58 (354)
T 2hjh_A 34 FTIDHFIQKLHTARKILVLTGAGVS 58 (354)
T ss_dssp CSHHHHHHHHHHCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHhCCcEEEEECchhh
Confidence 4689999999999999999999984
No 257
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=22.76 E-value=1.3e+02 Score=24.00 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCC--CEEEEcCCcccc-----------ccHHHHHHHHHHhCCcEeeCC---CCCCCCCC---------C
Q 011590 208 IDKAVSLLKEAKK--PLIVFGKGAAYA-----------RAEGELKKLVESTGIPFLPTP---MGKGLLPD---------T 262 (482)
Q Consensus 208 ~~~~~~~L~~a~r--pvil~G~g~~~~-----------~~~~~l~~lae~~g~pv~~t~---~~~g~~~~---------~ 262 (482)
++-+..++..... -|++.+.|+... ...+.+.+|++.+|++++.=. ..||+.++ .
T Consensus 21 l~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~~~~~ 100 (130)
T 2hy5_A 21 YQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNGKDA 100 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHTCSC
T ss_pred HHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhccccc
Confidence 3333344444333 467778887432 234568899998898876432 34676544 0
Q ss_pred CCcccch------HHHHhhhcCCEEEEec
Q 011590 263 HPLAATA------ARSLAIGQCDVALVVG 285 (482)
Q Consensus 263 hp~~~G~------~~~~~l~~aDlvl~iG 285 (482)
+.+..|. .-.+++.++|-||.+|
T Consensus 101 ~~l~~g~~i~~~~~l~~~~~~aD~vi~f~ 129 (130)
T 2hy5_A 101 TNIHPKFRISGLGQLVEAAIQADRLVVFG 129 (130)
T ss_dssp CCBCTTCEEECTHHHHHHHHHSSEEEEEC
T ss_pred ccccCCeEEeCHHHHHHHHHhCCEEEEeC
Confidence 1233331 2346788999999997
No 258
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=22.75 E-value=1.5e+02 Score=22.73 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.+++.+.|++.+--++++-..+. ....+.+..+|+..++|+++
T Consensus 27 ~~~v~kai~~gkaklVilA~D~~-~~~~~~i~~~c~~~~ip~~~ 69 (105)
T 3u5e_c 27 YKSTVKSLRQGKSKLIIIAANTP-VLRKSELEYYAMLSKTKVYY 69 (105)
T ss_dssp HHHHHHHHHTTCCSEEEECTTSC-HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 56777888888878888887774 45567899999999999985
No 259
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=22.37 E-value=1e+02 Score=29.46 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccc
Q 011590 210 KAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268 (482)
Q Consensus 210 ~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G 268 (482)
.+.+++. ++...++|... +.....+..++++.++|+++.......+...+++++.
T Consensus 63 ~a~~l~~--~~V~aiiG~~~--S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~r 117 (395)
T 3h6g_A 63 KACDQLS--LGVAAIFGPSH--SSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVS 117 (395)
T ss_dssp HHHHHHH--HCCSCEECCSS--HHHHHHHHHHHHHTTCCEEECSCCCCCTTCCCCSEEE
T ss_pred HHHHhhh--cCcEEEECCCC--hhHHHHHHHHHhcCCCCeEeeccCcccccccCceEEE
Confidence 3455554 47888888775 5677889999999999999765444445555676655
No 260
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=22.28 E-value=3.4e+02 Score=22.54 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCC----EEEecCCcChHHHHH-HHHh-CCCcEEe----------cCchHHHHHHHHHHHhH---hCCc
Q 011590 17 NTLAAKSLSLFGAT----HMFGVVGIPVTSLAN-RAVQ-LGVRFIA----------FHNEQSAGYAASAYGYL---TGKP 77 (482)
Q Consensus 17 ~~~l~~~L~~~Gv~----~vFgvpG~~~~~l~~-al~~-~~i~~v~----------~~~E~~A~~~A~g~ar~---tgk~ 77 (482)
-+--.+.|+++|++ .+|-+||...+|+.- .+.+ .+..-|. .|+|..|...+.|..++ +++|
T Consensus 31 l~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd~Va~~vs~gl~~v~l~~~vP 110 (154)
T 1hqk_A 31 VEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKP 110 (154)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34456889999997 799999999999874 4443 2333332 35788887777777773 4665
Q ss_pred EE
Q 011590 78 GI 79 (482)
Q Consensus 78 ~v 79 (482)
..
T Consensus 111 V~ 112 (154)
T 1hqk_A 111 IT 112 (154)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 261
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=22.20 E-value=1.5e+02 Score=25.43 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC-hHHHHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP-VTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL 92 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~-~~~l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~ 92 (482)
+...+-.++.|+++||.|-+++-+.+ ...-+..+.+ . ++..| .-|+|+ +-|..+.+
T Consensus 34 ~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~------------------~--a~~~g-~~ViIa--~AG~aa~L 90 (182)
T 1u11_A 34 WETMRHADALLTELEIPHETLIVSAHRTPDRLADYAR------------------T--AAERG-LNVIIA--GAGGAAHL 90 (182)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH------------------H--TTTTT-CCEEEE--EEESSCCH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHH------------------H--HHhCC-CcEEEE--ecCchhhh
Confidence 34566677777777777777777743 1111111110 0 00011 124444 33456777
Q ss_pred HHHHHhhhCCCcEEEEeCC
Q 011590 93 AGLSNGMINTWPIVMISGS 111 (482)
Q Consensus 93 ~ai~~A~~~~~Pvl~i~g~ 111 (482)
+++..+.. ..|||-+--.
T Consensus 91 pgvvA~~t-~~PVIgVP~~ 108 (182)
T 1u11_A 91 PGMCAAWT-RLPVLGVPVE 108 (182)
T ss_dssp HHHHHHHC-SSCEEEEEEC
T ss_pred HHHHHhcc-CCCEEEeeCC
Confidence 77777765 6777766644
No 262
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=22.08 E-value=1.2e+02 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 207 DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 207 ~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
-.+++.+.|.+.+--++++...+....-...+..+|+..++|++.
T Consensus 33 G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 77 (120)
T 1xbi_A 33 GANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAY 77 (120)
T ss_dssp SHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEE
Confidence 356677777777777777776664323356789999999999764
No 263
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=22.08 E-value=96 Score=30.07 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCC--CCCcccc
Q 011590 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD--THPLAAT 268 (482)
Q Consensus 206 ~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~--~hp~~~G 268 (482)
..++.+.+++.+-++...++|... +.....+..+++..++|+++.......+.. .+|+++.
T Consensus 71 ~a~~~a~~li~~~~~v~aviG~~~--S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr 133 (433)
T 4f11_A 71 KGLKAFYDAIKYGPNHLMVFGGVC--PSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFR 133 (433)
T ss_dssp HHHHHHHHHHHHSCCCSEEEECCS--HHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCCc--chHHHHHHHHHHhcCceEEEcccCCccccccccCCceEE
Confidence 445566677766567888888765 577788999999999999976543333332 3466654
No 264
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=21.94 E-value=1.4e+02 Score=28.06 Aligned_cols=60 Identities=12% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHH--HHHHhCCcEeeCCCCCCCCCCCCCccc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKK--LVESTGIPFLPTPMGKGLLPDTHPLAA 267 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~--lae~~g~pv~~t~~~~g~~~~~hp~~~ 267 (482)
++...+.++.|.+.+++..++|... +.....+.. ++++.++|++........+.+ +|+++
T Consensus 58 ~~~~~~~~~~l~~~~~v~~iig~~~--s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~-~~~~f 119 (364)
T 3lop_A 58 IEQTVRNVRDMARVDNPVALLTVVG--TANVEALMREGVLAEARLPLVGPATGASSMTT-DPLVF 119 (364)
T ss_dssp HHHHHHHHHHHHHHSCEEEEECCCC--HHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS-CTTEE
T ss_pred HHHHHHHHHHHHhhcCcEEEEecCC--CHHHHhhCchhhHHhcCCcEEEcccCcHhhcc-CCcEE
Confidence 3333445555555568888998654 455667888 999999999965543322222 45544
No 265
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.81 E-value=2.7e+02 Score=21.24 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=33.0
Q ss_pred HHHHh-CCCc-EEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhhH---HHHHHh-hhCCCcEEEEeCCC
Q 011590 45 NRAVQ-LGVR-FIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGL---AGLSNG-MINTWPIVMISGSC 112 (482)
Q Consensus 45 ~al~~-~~i~-~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~~---~ai~~A-~~~~~Pvl~i~g~~ 112 (482)
..|.. .+++ +..+.+...|.- +.+ ..+|-++++-..-.-.+.+ .-|... ....+|+|++++..
T Consensus 26 ~~L~~~~~~~~v~~~~~~~~a~~----~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 26 QFLENLFPYAKIKIAYNPFDAGD----LLH-TVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGAL 94 (143)
T ss_dssp HHHHHHCTTCEEEEECSHHHHHH----HHH-HTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSC
T ss_pred HHHHhccCccEEEEECCHHHHHH----HHH-hcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCC
Confidence 34555 6787 555554433321 112 2457777776432223333 333321 34578999999865
No 266
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=21.75 E-value=4.7e+02 Score=24.20 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=49.7
Q ss_pred HHHHHHHHHhc-CCCEEEecCCcChHHHHHHHHhCCCcE-Eec--Cch--HH---HHHHHHHHHh--HhCCcEEEEEcCC
Q 011590 17 NTLAAKSLSLF-GATHMFGVVGIPVTSLANRAVQLGVRF-IAF--HNE--QS---AGYAASAYGY--LTGKPGILLTVSG 85 (482)
Q Consensus 17 ~~~l~~~L~~~-Gv~~vFgvpG~~~~~l~~al~~~~i~~-v~~--~~E--~~---A~~~A~g~ar--~tgk~~v~~~t~G 85 (482)
..-+++.|++. |.+..+.+.|......-..+...++.+ +.. ..+ .- .........+ ...||-+++++..
T Consensus 21 ~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~ 100 (376)
T 1v4v_A 21 MAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQAARALKEMGADYVLVHGD 100 (376)
T ss_dssp HHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcCCCcccccccCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44678889988 787777777765432223333345543 111 100 00 0001111222 2468999998854
Q ss_pred hhhHhhHHHHHHhhhCCCcEEEEeC
Q 011590 86 PGCVHGLAGLSNGMINTWPIVMISG 110 (482)
Q Consensus 86 pG~~N~~~ai~~A~~~~~Pvl~i~g 110 (482)
. ...+.+...|+.-++|++++.+
T Consensus 101 ~--~~~~~~~~~a~~~~ip~v~~~~ 123 (376)
T 1v4v_A 101 T--LTTFAVAWAAFLEGIPVGHVEA 123 (376)
T ss_dssp C--HHHHHHHHHHHHTTCCEEEETC
T ss_pred h--HHHHHHHHHHHHhCCCEEEEeC
Confidence 3 2334455567888999976644
No 267
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=21.71 E-value=50 Score=31.78 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhh-cCCEE
Q 011590 205 NSDIDKAVSLLKE--AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIG-QCDVA 281 (482)
Q Consensus 205 ~~~~~~~~~~L~~--a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~-~aDlv 281 (482)
+..++++.+.+++ .+|++|+.|... .+..+.+.+..+..++-++ .+..|+..--.+-.....+.+ ++|+|
T Consensus 19 ~g~~~~l~~~l~~~g~~r~liVtd~~~--~~~~~~v~~~L~~~~~~v~-----~~v~~~p~~~~v~~~~~~~~~~~~D~I 91 (353)
T 3hl0_A 19 AGSSADVAEEIRRLGLSRALVLSTPQQ--KGDAEALASRLGRLAAGVF-----SEAAMHTPVEVTKTAVEAYRAAGADCV 91 (353)
T ss_dssp TTGGGGHHHHHHHTTCCCEEEECCGGG--HHHHHHHHHHHGGGEEEEE-----CCCCTTCBHHHHHHHHHHHHHTTCSEE
T ss_pred cCHHHHHHHHHHHhCCCEEEEEecCch--hhHHHHHHHHHhhCCcEEe-----cCcCCCCcHHHHHHHHHHHhccCCCEE
Q ss_pred EEec
Q 011590 282 LVVG 285 (482)
Q Consensus 282 l~iG 285 (482)
|.||
T Consensus 92 IavG 95 (353)
T 3hl0_A 92 VSLG 95 (353)
T ss_dssp EEEE
T ss_pred EEeC
No 268
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=21.46 E-value=1.3e+02 Score=28.08 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCC
Q 011590 149 KCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKK 220 (482)
Q Consensus 149 ~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~r 220 (482)
..+++++.........|+||.|..|+++..+-.- . ..+........++.++++.|.+..|
T Consensus 206 ~~~~~~~~~l~~~~~~~vylSiDiDvlDp~~aPg----t--------gtp~pgGlt~~e~~~~l~~l~~~~~ 265 (306)
T 1pq3_A 206 KVMERTFDLLIGKRQRPIHLSFDIDAFDPTLAPA----T--------GTPVVGGLTYREGMYIAEEIHNTGL 265 (306)
T ss_dssp HHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTCCS----B--------SSCCSSCBCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhcCCCeEEEEEecCCcCccccCC----C--------CCCCCCCCCHHHHHHHHHHHHcCCC
Confidence 4455555555322246999999999998764310 0 0122335566788888888876655
No 269
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=21.31 E-value=68 Score=30.39 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCcc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAA 230 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~ 230 (482)
++.+++++++|+++++.|++.|.|+.
T Consensus 31 ~~~i~~l~~~i~~a~~ivvlTGAGIS 56 (318)
T 3k35_A 31 ERKVWELARLVWQSSSVVFHTGAGIS 56 (318)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECGGGS
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccC
Confidence 35688899999999999999999984
No 270
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=21.31 E-value=64 Score=24.72 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.-|++++=+.. ...+.++++|++.|+||+.+.
T Consensus 31 ~aP~VvAKG~~---~~A~~I~~~A~e~gVPi~e~~ 62 (97)
T 3t7y_A 31 KAPWIIAMGVN---LRAKRIIAEAEKYGVPIMRNV 62 (97)
T ss_dssp SSCEEEEEEEH---HHHHHHHHHHHHHTCCEEECH
T ss_pred CCCEEEEEeCc---HHHHHHHHHHHHcCCeEEECH
Confidence 35777774332 457789999999999999654
No 271
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=21.19 E-value=2.9e+02 Score=21.34 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=50.6
Q ss_pred HHHHHHhCCCcEEecCchHHHHHHHHHHHhHhCCcEEEEEcCChhhHhh---HHHHHHh-hhCCCcEEEEeCCCCcccCC
Q 011590 43 LANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHG---LAGLSNG-MINTWPIVMISGSCDQKDFG 118 (482)
Q Consensus 43 l~~al~~~~i~~v~~~~E~~A~~~A~g~ar~tgk~~v~~~t~GpG~~N~---~~ai~~A-~~~~~Pvl~i~g~~~~~~~~ 118 (482)
+...|...|++++.+.+...|.-. .+. .+|-++++-..-.-.+. +.-|... ....+|+|++++.....
T Consensus 24 l~~~L~~~g~~v~~~~~~~~a~~~----l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~--- 95 (147)
T 2zay_A 24 SISALSQEGFDIIQCGNAIEAVPV----AVK-THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAK--- 95 (147)
T ss_dssp HHHHHHHHTEEEEEESSHHHHHHH----HHH-HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH---
T ss_pred HHHHHHHcCCeEEEeCCHHHHHHH----HHc-CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHH---
Confidence 334455556776665554443221 111 35777776543222233 3333331 34679999999864211
Q ss_pred CCCCCCcCHhhhh-ccccceeeecCCcCcHHHHHHHHHHHhh
Q 011590 119 RGDFQELDQVEAV-KPFSKFAVKAKDITEVPKCVAQVLERAV 159 (482)
Q Consensus 119 ~~~~q~~d~~~~~-~~~~k~~~~~~~~~~~~~~l~~A~~~a~ 159 (482)
.....+ .....|-...-+++++...++++++...
T Consensus 96 -------~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 96 -------EEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp -------HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 111122 1233344444466677777777766553
No 272
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=21.17 E-value=3.6e+02 Score=22.40 Aligned_cols=62 Identities=23% Similarity=0.149 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCC----EEEecCCcChHHHHH-HHHh-CCCcEEe----------cCchHHHHHHHHHHHhH---hCCcE
Q 011590 18 TLAAKSLSLFGAT----HMFGVVGIPVTSLAN-RAVQ-LGVRFIA----------FHNEQSAGYAASAYGYL---TGKPG 78 (482)
Q Consensus 18 ~~l~~~L~~~Gv~----~vFgvpG~~~~~l~~-al~~-~~i~~v~----------~~~E~~A~~~A~g~ar~---tgk~~ 78 (482)
+--.+.|+++|++ .+|-+||...+|+.- .+.+ .+..-|. .|+|..|...+.|..++ +++|.
T Consensus 32 ~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~Gl~~v~l~~~vPV 111 (154)
T 1rvv_A 32 SGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPV 111 (154)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhhCCCE
Confidence 4456889999997 799999999999874 4443 3343332 46788888878777773 46654
Q ss_pred E
Q 011590 79 I 79 (482)
Q Consensus 79 v 79 (482)
.
T Consensus 112 ~ 112 (154)
T 1rvv_A 112 I 112 (154)
T ss_dssp E
T ss_pred E
Confidence 3
No 273
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=21.12 E-value=1.5e+02 Score=27.82 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHhcC--CCEEEecCCc-----ChHHHHHHHHh-CCCcEEecCchH-------HHHHHHHHHHhHhCCcEE
Q 011590 15 DGNTLAAKSLSLFG--ATHMFGVVGI-----PVTSLANRAVQ-LGVRFIAFHNEQ-------SAGYAASAYGYLTGKPGI 79 (482)
Q Consensus 15 ~~~~~l~~~L~~~G--v~~vFgvpG~-----~~~~l~~al~~-~~i~~v~~~~E~-------~A~~~A~g~ar~tgk~~v 79 (482)
+....+.+.+.+.| +.++.++-|. ...++++.|.+ +..+.|...-|. .+-|+..+.....+||.+
T Consensus 163 ~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~~~~~KPVv 242 (305)
T 2fp4_A 163 TLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVV 242 (305)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCSTTCCCEE
T ss_pred HHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHHhcCCCCEE
Confidence 35566778887755 5677777665 35677777764 678888766553 667776543324478888
Q ss_pred EEEc
Q 011590 80 LLTV 83 (482)
Q Consensus 80 ~~~t 83 (482)
++..
T Consensus 243 ~~k~ 246 (305)
T 2fp4_A 243 SFIA 246 (305)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7764
No 274
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=20.91 E-value=5e+02 Score=24.13 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCcChHHHHHHHHhCCCcEEecCchH------------------------HHHHHHHHHH
Q 011590 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQ------------------------SAGYAASAYG 71 (482)
Q Consensus 16 ~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~i~~v~~~~E~------------------------~A~~~A~g~a 71 (482)
-.-.|++.|++.|.+..|..++. +.+.+...|++++....+. .+..+.....
T Consensus 20 ~~~~La~~L~~~GheV~v~~~~~----~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (402)
T 3ia7_A 20 PSLGLVSELARRGHRITYVTTPL----FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILRAAE 95 (402)
T ss_dssp HHHHHHHHHHHTTCEEEEEECHH----HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCCEEEEEcCHH----HHHHHHHcCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999988877642 3444556788887665320 0001111222
Q ss_pred hH--hCCcEEEEEcCChhhHhhHHHHHHhhhCCCcEEEEeC
Q 011590 72 YL--TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110 (482)
Q Consensus 72 r~--tgk~~v~~~t~GpG~~N~~~ai~~A~~~~~Pvl~i~g 110 (482)
+. .-+|-++++++-. ...+..-|..-++|++.+..
T Consensus 96 ~~l~~~~pD~Vi~d~~~----~~~~~~aA~~~giP~v~~~~ 132 (402)
T 3ia7_A 96 EALGDNPPDLVVYDVFP----FIAGRLLAARWDRPAVRLTG 132 (402)
T ss_dssp HHHTTCCCSEEEEESTT----HHHHHHHHHHHTCCEEEEES
T ss_pred HHHhccCCCEEEECchH----HHHHHHHHHhhCCCEEEEec
Confidence 21 2478888876422 22345567888999999873
No 275
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.68 E-value=1.1e+02 Score=26.30 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhcCCEEEE
Q 011590 204 VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALV 283 (482)
Q Consensus 204 ~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~aDlvl~ 283 (482)
+.+.++++++.|.+++ -++++|.|.... ....+..-..++|.++.... +.+ ...+.+-|++|+
T Consensus 33 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~-------~~~--------~~~~~~~DvvI~ 95 (200)
T 1vim_A 33 DLETVGEMIKLIDSAR-SIFVIGAGRSGY-IAKAFAMRLMHLGYTVYVVG-------ETV--------TPRITDQDVLVG 95 (200)
T ss_dssp CHHHHHHHHHHHHHSS-CEEEECSHHHHH-HHHHHHHHHHHTTCCEEETT-------STT--------CCCCCTTCEEEE
T ss_pred CHHHHHHHHHHHhcCC-EEEEEEecHHHH-HHHHHHHHHHhcCCeEEEeC-------Ccc--------ccCCCCCCEEEE
Confidence 5688999999999986 578889886322 33333333356788776532 111 013456788888
Q ss_pred ecCccCcccccCCCCCC-CCCCcEEEEeCCch
Q 011590 284 VGARLNWLLHFGEPPKW-SKDVKFVLVDVCKE 314 (482)
Q Consensus 284 iG~~~~~~~~~g~~~~~-~~~~~ii~id~d~~ 314 (482)
+-.+-.....-.-.... ..++++|.|..++.
T Consensus 96 iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 127 (200)
T 1vim_A 96 ISGSGETTSVVNISKKAKDIGSKLVAVTGKRD 127 (200)
T ss_dssp ECSSSCCHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred EeCCCCcHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 85332210000000000 23567777766553
No 276
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=20.64 E-value=1.3e+02 Score=27.60 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCcc---------------------ccccHHHHHHHHHHh-CCc
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAA---------------------YARAEGELKKLVEST-GIP 248 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~---------------------~~~~~~~l~~lae~~-g~p 248 (482)
...++.+++++++...|+|+.|+... ....++...+.+... |+|
T Consensus 48 ~~Rl~~A~~L~~~g~~~lIvSGG~g~~t~~~~~~v~~~~~y~~l~~~~~sEA~~m~~~l~~~~GVp 113 (266)
T 3ca8_A 48 MPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIP 113 (266)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCSSTTHHHHHHHHHTCTTGGGSCCTTSCHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHcCCCcEEEECCCCCcccchhhhhccccccccccCCCCCHHHHHHHHHHHhcCCC
Confidence 45788999999887778998887543 113456678888886 997
No 277
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=20.57 E-value=1.3e+02 Score=24.74 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHhCCCCEEEEcCCcccc----ccHHHHHHHHHHhCCcEeeCC
Q 011590 211 AVSLLKEAKKPLIVFGKGAAYA----RAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 211 ~~~~L~~a~rpvil~G~g~~~~----~~~~~l~~lae~~g~pv~~t~ 253 (482)
+.+.+...+.|+|++|...... -..+.+.++++.++++++..-
T Consensus 103 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (181)
T 3t5g_A 103 LLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 149 (181)
T ss_dssp HHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEe
Confidence 3344444578999999877532 246788999999999987543
No 278
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=20.43 E-value=1.9e+02 Score=22.51 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEeeC
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t 252 (482)
.++..+.|++.+--++++...+. ....+.+..+|+..++|++.-
T Consensus 31 ~~~t~kai~~gkakLVilA~D~~-~~~~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 31 YKTVLKTLRSSLGKLIILANNCP-PLRKSEIETYAMLAKISVHHF 74 (112)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCC-HHHHHHHHHHHHHTTCCEECC
T ss_pred HHHHHHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEEe
Confidence 56778888888888888888875 356678999999999999853
No 279
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=20.37 E-value=4.4e+02 Score=23.19 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcEE----e-cCchHHHHHHHHHHH-hHhCCcEEE
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRFI----A-FHNEQSAGYAASAYG-YLTGKPGIL 80 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~v----~-~~~E~~A~~~A~g~a-r~tgk~~v~ 80 (482)
.++..+++.|.+.|-+.+.-+.|.. ...+.+++.+.++++. . .......++.+.-.. ....+|-++
T Consensus 125 ~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 204 (296)
T 3brq_A 125 QTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSAL 204 (296)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEE
T ss_pred HHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEE
Confidence 4778889999999988876666542 2235556666665432 1 111122222111111 112457788
Q ss_pred EEcCChhhHhhHHHHHHh
Q 011590 81 LTVSGPGCVHGLAGLSNG 98 (482)
Q Consensus 81 ~~t~GpG~~N~~~ai~~A 98 (482)
++.+..-+..++.++.++
T Consensus 205 ~~~~d~~a~g~~~al~~~ 222 (296)
T 3brq_A 205 VASNDDMAIGAMKALHER 222 (296)
T ss_dssp EESSHHHHHHHHHHHHHH
T ss_pred EECChHHHHHHHHHHHHc
Confidence 887665455555555544
No 280
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=20.33 E-value=2.4e+02 Score=26.05 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCcccccc-----HHHHHHHHHHhCCcEeeCCC
Q 011590 203 IVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA-----EGELKKLVESTGIPFLPTPM 254 (482)
Q Consensus 203 ~~~~~~~~~~~~L~~a~rpvil~G~g~~~~~~-----~~~l~~lae~~g~pv~~t~~ 254 (482)
.+...+++....+...+.|+|+++.-+..... .+.+.++++.+|.+++.+..
T Consensus 94 ~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 94 FNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSA 150 (302)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCT
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEEC
Confidence 34556777777778889999999998875432 34566778888998875543
No 281
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=20.32 E-value=69 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCC
Q 011590 219 KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253 (482)
Q Consensus 219 ~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~ 253 (482)
.-|++++=+.. ...+.++++|+..|+||+.+.
T Consensus 16 ~AP~VvAKG~~---~~A~~I~e~A~e~gVPi~e~~ 47 (93)
T 2vt1_B 16 PAPFISLIETN---QCALAVRKYANEVGIPTVRDV 47 (93)
T ss_dssp SSCEEEEEEEH---HHHHHHHHHHHHTTCCEEECH
T ss_pred CCCEEEEEeCc---HHHHHHHHHHHHcCCCEEECH
Confidence 45767664332 457789999999999999654
No 282
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=20.27 E-value=4.7e+02 Score=24.11 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccc--cc-cHHHHHHHHHHhCCcEee-CCCCC
Q 011590 205 NSDIDKAVSLLKEAKKPLIVFGKGAAY--AR-AEGELKKLVESTGIPFLP-TPMGK 256 (482)
Q Consensus 205 ~~~~~~~~~~L~~a~rpvil~G~g~~~--~~-~~~~l~~lae~~g~pv~~-t~~~~ 256 (482)
.+...+.++.+..+.-..|++|+.... .. ..+.+.++-+.+++|++- .+..+
T Consensus 52 ~~~~~~~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~ 107 (286)
T 3vk5_A 52 VTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVLHFPPRP 107 (286)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBT
T ss_pred cHHHHHHHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 445555677777788888999954333 22 334455555559999998 66333
No 283
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=20.26 E-value=4.9e+02 Score=23.67 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcE----Ee-cCchHHHHHHHHHHHhHhCCcEEEE
Q 011590 15 DGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRF----IA-FHNEQSAGYAASAYGYLTGKPGILL 81 (482)
Q Consensus 15 ~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~----v~-~~~E~~A~~~A~g~ar~tgk~~v~~ 81 (482)
.++...++.|.+.|-+.+.-+-|.. ...+.+++.+.++++ +. .......++-+.-..... +|-+++
T Consensus 166 ~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ai~ 244 (332)
T 2o20_A 166 LAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER-GATSAV 244 (332)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT-TCCEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhcc-CCCEEE
Confidence 4788889999999988776665532 234556666666543 22 211222222221111122 788888
Q ss_pred EcCChhhHhhHHHHHHh
Q 011590 82 TVSGPGCVHGLAGLSNG 98 (482)
Q Consensus 82 ~t~GpG~~N~~~ai~~A 98 (482)
|.+..-+..++.++.++
T Consensus 245 ~~~d~~A~g~~~al~~~ 261 (332)
T 2o20_A 245 VSHDTVAVGLLSAMMDK 261 (332)
T ss_dssp ESCHHHHHHHHHHHHHT
T ss_pred ECChHHHHHHHHHHHHc
Confidence 87665444455555443
No 284
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=20.17 E-value=1.9e+02 Score=22.11 Aligned_cols=43 Identities=7% Similarity=0.191 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccccccHHHHHHHHHHhCCcEee
Q 011590 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251 (482)
Q Consensus 208 ~~~~~~~L~~a~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~ 251 (482)
.+++.+.|++.+--++++-..+. ....+.+..+++..++|++.
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~-~~~~~~i~~~c~~~~ip~~~ 69 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCP-TVRKSEIEYYASLAQISIHH 69 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSC-HHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEE
Confidence 56677888887777787777774 24467788999999999984
No 285
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.16 E-value=2.3e+02 Score=25.16 Aligned_cols=84 Identities=11% Similarity=0.005 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHHhcCCCEEEecCCcC--------hHHHHHHHHhCCCcEEe--cCchHHHHHHHHHHHhHhCCcEEEEEc
Q 011590 14 IDGNTLAAKSLSLFGATHMFGVVGIP--------VTSLANRAVQLGVRFIA--FHNEQSAGYAASAYGYLTGKPGILLTV 83 (482)
Q Consensus 14 ~~~~~~l~~~L~~~Gv~~vFgvpG~~--------~~~l~~al~~~~i~~v~--~~~E~~A~~~A~g~ar~tgk~~v~~~t 83 (482)
..++...++.|. .|-+.+--+.|.. ...+.+++.+.++++.. ...+...-. +.-+-+...+|-++++.
T Consensus 108 ~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ai~~~ 185 (277)
T 3hs3_A 108 TKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLEETPENNPYIS-AQSALNKSNQFDAIITV 185 (277)
T ss_dssp HHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSCHHHH-HHHHHHTGGGCSEEECS
T ss_pred HHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCCCccCCchHHH-HHHHHcCCCCCCEEEEC
Confidence 357888899999 9998887665542 33455666677776532 111211111 11111123467888888
Q ss_pred CChhhHhhHHHHHHhh
Q 011590 84 SGPGCVHGLAGLSNGM 99 (482)
Q Consensus 84 ~GpG~~N~~~ai~~A~ 99 (482)
+..-+..++.++.++-
T Consensus 186 ~d~~A~g~~~al~~~g 201 (277)
T 3hs3_A 186 NDLYAAEIIKEAKRRN 201 (277)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7665555666665543
No 286
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=20.16 E-value=76 Score=27.14 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhhc--CCEEEEecC
Q 011590 232 ARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQ--CDVALVVGA 286 (482)
Q Consensus 232 ~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~~--aDlvl~iG~ 286 (482)
......|.++.+.+|+.+.. .+.+|.+ +--+-....+++++ +|+||+-|.
T Consensus 39 Dsn~~~L~~~l~~~G~~v~~----~~iv~Dd-~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 39 DESGDIIKQLLIENGHKIIG----YSLVPDD-KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEE----EEEECSC-HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred ehHHHHHHHHHHHCCCEEEE----EEEeCCC-HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34567789999999987653 3455554 22222334456666 999999984
No 287
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=20.15 E-value=65 Score=30.02 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHh--CCCCEEEEcCCcc
Q 011590 205 NSDIDKAVSLLKE--AKKPLIVFGKGAA 230 (482)
Q Consensus 205 ~~~~~~~~~~L~~--a~rpvil~G~g~~ 230 (482)
+..+++++++|++ +++.||+.|.|+.
T Consensus 5 ~~~i~~l~~~i~~~~a~~ivvltGAGiS 32 (289)
T 1q1a_A 5 EMSVRKIAAHMKSNPNAKVIFMVGAGIS 32 (289)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcee
Confidence 3568999999999 9999999999984
No 288
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=20.12 E-value=1.7e+02 Score=27.50 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcCCCceEEEEcCcchhccccChhHHHHHHHhhhhhcccccCCCCCHHHHHHHHHHHHhCCC
Q 011590 148 PKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKK 220 (482)
Q Consensus 148 ~~~l~~A~~~a~~~~~gPv~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~r 220 (482)
.+.+++++..... ...|+||.|..|+++...-.- . ..+........++.++++.|....+
T Consensus 223 ~~v~~~~~~~~~~-~~~~vylSiDiDvLDpa~aPg----t--------gtp~pgGlt~~e~~~il~~l~~~~~ 282 (322)
T 3m1r_A 223 IPTIKEILPVVQD-KTDFIFISVDMDVLDQSHAPG----C--------PAIGPGGLYTDELLEAVKYIAQQPN 282 (322)
T ss_dssp HHHHHHHHHHHHT-TCSEEEEEEEGGGBCTTTCTT----S--------SSCCSSCBCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhc-cCCeEEEEEeecccChhhCCC----C--------CCCCCCCCCHHHHHHHHHHHhccCC
Confidence 4455666655433 346999999999997764310 0 0122334566777788888876543
No 289
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=20.02 E-value=56 Score=31.51 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhC--CCCEEEEcCCccccccHHHHHHHHHHhCCcEeeCCCCCCCCCCCCCcccchHHHHhhh-cCCEE
Q 011590 205 NSDIDKAVSLLKEA--KKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIG-QCDVA 281 (482)
Q Consensus 205 ~~~~~~~~~~L~~a--~rpvil~G~g~~~~~~~~~l~~lae~~g~pv~~t~~~~g~~~~~hp~~~G~~~~~~l~-~aDlv 281 (482)
+..++++.+.+++- +|++|+.|... .+..+.+.+..+..++-++ .+..|+...-.+......+.+ ++|+|
T Consensus 21 ~g~~~~l~~~l~~~g~~r~liVtd~~~--~~~~~~v~~~L~~~~~~~f-----~~v~~~p~~~~v~~~~~~~~~~~~D~I 93 (358)
T 3jzd_A 21 AGSSSQVAAEVERLGAKRALVLCTPNQ--QAEAERIADLLGPLSAGVY-----AGAVMHVPIESARDATARAREAGADCA 93 (358)
T ss_dssp TTGGGGHHHHHHHTTCSCEEEECCGGG--HHHHHHHHHHHGGGEEEEE-----CCCCTTCBHHHHHHHHHHHHHHTCSEE
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCcH--HHHHHHHHHHhccCCEEEe-----cCCcCCCCHHHHHHHHHHhhccCCCEE
Q ss_pred EEec
Q 011590 282 LVVG 285 (482)
Q Consensus 282 l~iG 285 (482)
|.||
T Consensus 94 IavG 97 (358)
T 3jzd_A 94 VAVG 97 (358)
T ss_dssp EEEE
T ss_pred EEeC
Done!