RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011590
(482 letters)
>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated.
Length = 569
Score = 480 bits (1237), Expect = e-166
Identities = 215/467 (46%), Positives = 297/467 (63%), Gaps = 13/467 (2%)
Query: 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAAS 68
Q DG L +L L G ++GVVGIP+T LA A G+R+I F +EQSAG AA+
Sbjct: 5 DQLQLTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQAEGIRYIGFRHEQSAGNAAA 64
Query: 69 AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELD 126
A G+LT KPG+ LTVS PG ++GL L+N N +P++MISGS +++ D +GD++ELD
Sbjct: 65 AAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELD 124
Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
Q+ A KPF K A + ++ VA+ + AVSGRPGG YLDLP VL QT+ EA
Sbjct: 125 QLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALT 184
Query: 187 -LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
L+K + A + +D+A+ LLK+AK+PLI+ GKGAAYA+A+ ++++ VE T
Sbjct: 185 SLVKVVDPAPAQLPA----PEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKT 240
Query: 246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
GIPFLP M KGLLPDTHP +A AARSLA+ DV L+VGARLNWLL G+ W D K
Sbjct: 241 GIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTWGADKK 300
Query: 306 FVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
F+ +D+ +EI+ +P +VGD V++ + +K F W++A+ ++ + N
Sbjct: 301 FIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLKQNTF--KAPAEWLDALAERKEKN 358
Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRC 424
KM +L+ D P NF + IRD + +P LV+EGANT+D+ R ++ +PR
Sbjct: 359 AAKMAEKLSTDTQPMNFYNALGAIRDVL--KENPDIYLVNEGANTLDLARNIIDMYKPRH 416
Query: 425 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
RLD GTWG MG+G+GY IAAA+ + VVA+EGDS FGFS +EVE
Sbjct: 417 RLDCGTWGVMGIGMGYAIAAAVET-GKPVVAIEGDSAFGFSGMEVET 462
>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase. In a number of
bacteria, including Oxalobacter formigenes from the
human gut, a two-gene operon of oxc (oxalyl-CoA
decarboxylase) and frc (formyl-CoA transferase) encodes
a system for degrading and therefore detoxifying
oxalate. Members of this family are the thiamine
pyrophosphate (TPP)-containing enzyme oxalyl-CoA
decarboxylase [Cellular processes, Detoxification].
Length = 554
Score = 435 bits (1120), Expect = e-148
Identities = 216/463 (46%), Positives = 299/463 (64%), Gaps = 13/463 (2%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
A DG L +L L G ++GVVGIPVT LA A G+R+I F +EQSAGYAA+A G
Sbjct: 1 ALTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQAKGMRYIGFRHEQSAGYAAAAAG 60
Query: 72 YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQELDQVE 129
+LT KPG+ LTVS PG ++GL L+N N +P++MISGS ++ D +GD++E+DQ+
Sbjct: 61 FLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLA 120
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK-LL 188
A KPF+K A + ++ +A+ + AVSGRPGG YLDLP VL QT+ +A+K L+
Sbjct: 121 AAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLV 180
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
K + A + + +D+AV LLK+AK+PLI+ GKGAAYA+A+ E+++ VE TGIP
Sbjct: 181 KVVDPAPKQLPS----PDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIP 236
Query: 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVL 308
FLP M KGLLPDTHP +A AARS A+ + DV ++VGARLNWLL G+ W +D KF+
Sbjct: 237 FLPMSMAKGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQ 296
Query: 309 VDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLK 367
VD+ E++ +P +VGD V++ + K+ + W AI K++ NV K
Sbjct: 297 VDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPAD--WRNAIKTKSEKNVAK 354
Query: 368 MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLD 427
M +L+ P N+ + IRD + +P LV+EGANT+D+ R V+ +PR RLD
Sbjct: 355 MAERLSASESPMNYHGALEAIRDVL--KDNPDIYLVNEGANTLDLARNVIDMYKPRHRLD 412
Query: 428 AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
GTWG MG+G+GY IAAA+ + VVA+EGDS FGFS +EVE
Sbjct: 413 VGTWGVMGIGMGYAIAAAVETGKP-VVALEGDSAFGFSGMEVE 454
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
[acetolactate synthase, pyruvate dehydrogenase
(cytochrome), glyoxylate carboligase, phosphonopyruvate
decarboxylase] [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 550
Score = 327 bits (840), Expect = e-106
Identities = 144/471 (30%), Positives = 219/471 (46%), Gaps = 38/471 (8%)
Query: 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGY 72
+ G ++L G +FG+ G + L + G+R I +EQ A +AA Y
Sbjct: 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDSGIRHILVRHEQGAAFAADGYAR 60
Query: 73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
TGKPG+ L SGPG + L GL++ +++ P++ I+G G FQE+DQV +
Sbjct: 61 ATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFR 120
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
P +K+ + + ++P+ VA+ A+SGRPG +DLP DVL E +
Sbjct: 121 PITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPY 180
Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
I KA LL EAK+P+I+ G G A A EL++L E G P + T
Sbjct: 181 RPAPP------PPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTT 234
Query: 253 PMGKGLLPDTHPLAA-------TAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
MGKG +P+ HPL+ T A + A+ + D+ L VGAR + + ++
Sbjct: 235 LMGKGAVPEDHPLSLGMLGMHGTKAANEALEEADLLLAVGARFDDRVTG--YSGFAPPAA 292
Query: 306 FVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
+ +D+ EI + +VGDAK LE + +E+K E W+E + +
Sbjct: 293 IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELKPERA------AWLEELLEARAAY 346
Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIR-----DAILGVGSPAPILVSEGANTMDVGRAVLVQ 419
+LA D ++++R DAI ++ G + M R
Sbjct: 347 RDLALEELADD--GIKPQYVIKVLRELLPDDAI--------VVTDVGQHQMWAAR-YFDF 395
Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
PR L +G GTMG GL I A +A P+R VVA+ GD GF + E+E
Sbjct: 396 YRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELE 446
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 214 bits (548), Expect = 1e-63
Identities = 138/456 (30%), Positives = 222/456 (48%), Gaps = 18/456 (3%)
Query: 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG 75
LAA+ L G MF + G + L + A + G+R I +EQ+A +AA A+ LT
Sbjct: 7 AGRLAARRLKAHGVDTMFTLSGGHLFPLYDGAREEGIRLIDVRHEQTAAFAAEAWAKLTR 66
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
PG+ + +GPG +G++ ++ N P+V++ G +G G QE+D V V P +
Sbjct: 67 VPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHVPFVAPVT 126
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK 195
KFA A+ + V Q L+ AV+ G ++D P D S+++ + A
Sbjct: 127 KFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA---FSMADDDGR----PGAL 179
Query: 196 ETVTQGGIVNSD-IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
+ G + D + +A LL EA++P+I+ G + AE L +L E GIP L M
Sbjct: 180 TELPAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGM 239
Query: 255 GKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314
G+G++P HPLA + AR A+G+ DV LVVG +++ L FG ++ V + D +
Sbjct: 240 GRGVVPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLV--HVDDAPPQ 297
Query: 315 EIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAK 374
R GL GD +L + D + W+E + + +LA
Sbjct: 298 RAHHRPVAAGLYGDLSAILSALAGAGGDRT----DHQGWIEELRTAETAARARDAAELAD 353
Query: 375 DVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTM 434
D P + PMR+ + + + I++ +G + + + P C LD G +G +
Sbjct: 354 DRDPIH---PMRVYGE-LAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCL 409
Query: 435 GVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
G G GY +AA +A P R VV ++GD FGFS ++V+
Sbjct: 410 GTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVD 445
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 194 bits (494), Expect = 2e-55
Identities = 130/456 (28%), Positives = 215/456 (47%), Gaps = 30/456 (6%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
K+L G +FG G + + + I +EQ+A +AA Y +GK G+ +
Sbjct: 9 KALEAEGVKIIFGYPGGALLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCV 68
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
SGPG + + G++ ++ P++ ++G K G FQE+D + P +K +
Sbjct: 69 ATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNFQI 128
Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201
K E+P+ E A +GRPG ++DLP DV + + + K + T G
Sbjct: 129 KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKIDLPGYKPTTFG 188
Query: 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261
+ I KA L+ EA++P+I+ G G + A EL +L E IP T MGKG P+
Sbjct: 189 HPLQ--IKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPE 246
Query: 262 THPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314
HPLA T A + ++ + DV + +G R + G+ ++ + K + +D+
Sbjct: 247 DHPLALGMVGMHGTKAANYSVTESDVLIAIGCRFSDRTT-GDISSFAPNAKIIHIDIDPA 305
Query: 315 EIELRKP-HLGLVGDAKKVL-EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQL 372
EI + +VGDAK VL +++ + +K E W+E + K K+++ +M+
Sbjct: 306 EIGKNVRVDVPIVGDAKNVLRDLLAELMKKEI---KNKSEWLERVKKLKKESIPRMDF-- 360
Query: 373 AKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR-----AVLVQTE-PRCRL 426
D P + P R+I++ + + P T DVG+ A +T PR +
Sbjct: 361 --DDKP---IKPQRVIKELMEVLREIDPS--KNTIITTDVGQNQMWMAHFFKTSAPRSFI 413
Query: 427 DAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+G GTMG G I A +A P+ V+A+ GD GF
Sbjct: 414 SSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGF 449
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 184 bits (470), Expect = 3e-52
Identities = 137/459 (29%), Positives = 213/459 (46%), Gaps = 43/459 (9%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
+SL G +FG G +P+ G+ I +EQ A +AA Y +GK G
Sbjct: 9 ESLKDEGVKTVFGYPGGAILPIYDALYNDS--GIEHILVRHEQGAAHAADGYARASGKVG 66
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
++L SGPG + + G++ +++ P+V+ +G G FQE D + P +K +
Sbjct: 67 VVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITKHS 126
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
+ K ++P+ + + A +GRPG +DLP DV I EK+ + TV
Sbjct: 127 FQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKV--NLPGYRPTV 184
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
I KA L+ AKKP+I+ G G A A ELK+L E IP T MG G
Sbjct: 185 KGH---PLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGS 241
Query: 259 LPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDV 311
P+ HPL+ T +LA+ +CD+ + VGAR + + G K++ + K + +D+
Sbjct: 242 FPEDHPLSLGMLGMHGTKTANLAVHECDLIIAVGARFDDRVT-GNLAKFAPNAKIIHIDI 300
Query: 312 CKEEI-ELRKPHLGLVGDAKKVL-EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKME 369
EI + + + +VGDA+ VL E++ K + + K W+E I K K+ LKM+
Sbjct: 301 DPAEIGKNVRVDIPIVGDARNVLEELLKKLFELKER---KESAWLEQINKWKKEYPLKMD 357
Query: 370 VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR----AVLVQT--EPR 423
P ++I + + + E T DVG+ A +PR
Sbjct: 358 ----YTEEGIK---PQQVIEEL-------SRVTKDEAIVTTDVGQHQMWAAQFYPFRKPR 403
Query: 424 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+ +G GTMG GL I A +A PE V+ + GD F
Sbjct: 404 RFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSF 442
>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit;
Reviewed.
Length = 572
Score = 179 bits (456), Expect = 4e-50
Identities = 129/470 (27%), Positives = 222/470 (47%), Gaps = 41/470 (8%)
Query: 14 IDGNTLAAKSLSLFGATHMFGVVGI---PVTSLANRAVQLG-VRFIAFHNEQSAGYAASA 69
G + SL G +FG+ G+ + + G +R + +EQ+A +AA
Sbjct: 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADG 61
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
Y +G PG+ SGPG + + GL ++ P++ I+G + G+ FQE D +
Sbjct: 62 YARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMG 121
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTIS-VSEAEKLL 188
+ +K+ + K I E+P+ + A +GRPG +D+P D+ ++ + + EK
Sbjct: 122 VFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEK-- 179
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ ++ T+ I + KA +L A++P+I+ G G ++ A E+ +L E IP
Sbjct: 180 PLVKGYRDFPTR--IDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIP 237
Query: 249 FLPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLN--WLLHFGEPPK 299
+ T GK +P HPL A S+A + D LVVGAR + + E +
Sbjct: 238 IVSTFPGKTAIPHDHPLYFGPMGYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVE 297
Query: 300 WSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH---PWVE 355
K KF++V++ + E K +G+ G+AK +L + K I + LG+ W++
Sbjct: 298 TRK--KFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAITE----LGQKRDRSAWLK 351
Query: 356 AIWKKTKDNVLKM-EVQLAKDVVPFNFMTPMR--IIRDAILGVGSPAPILVSEGANTMDV 412
+ K+ K+ + + + P+ M +R + RDAI+ G V + +V
Sbjct: 352 RV-KEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAIVTTG------VGQHQMWAEV 404
Query: 413 GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
VL EPR L + GTMG GL + A +A P+++VV ++GD F
Sbjct: 405 FWEVL---EPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSF 451
>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.
Length = 588
Score = 174 bits (443), Expect = 4e-48
Identities = 123/478 (25%), Positives = 203/478 (42%), Gaps = 49/478 (10%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
++L G TH FG++G + + L A G+RFI +EQ+AG+ A Y +TG+ G
Sbjct: 14 ETLQAHGITHAFGIIGSAFMDASDLFPPA---GIRFIDVAHEQNAGHMADGYTRVTGRMG 70
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
+++ +GPG + + ++ P+V+++ K G+G FQE +Q+ + +K+
Sbjct: 71 MVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMPMFEDMTKYQ 130
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
+ +D + + + + +V ++A G +++P D + I V + + E + E
Sbjct: 131 EEVRDPSRMAEVLNRVFDKAKRES-GPAQINIPRDYFYGVIDVEIPQPVRLERGAGGE-- 187
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
+ +A LL EAK P+I+ G G + A E K L E P +
Sbjct: 188 -------QSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDA 240
Query: 259 LPDTHPLAA--------TAARSLAIGQCDVALVVGARLNWLLHFGEPPK-----WSKDVK 305
P +HPL AA L I + DV L +G RLN FG P+ W KD K
Sbjct: 241 FPGSHPLWVGPLGYNGSKAAMEL-IAKADVVLALGTRLN---PFGTLPQYGIDYWPKDAK 296
Query: 306 FVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
+ VD+ + I L K +G+ GDAK V + + + I K
Sbjct: 297 IIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALI-AAEKSA 355
Query: 365 VLKMEVQLAKDVVPF-------------NFMTPMRIIRDAILGVGSPAPILVSEGANTMD 411
+ + ++M P + +R I I+ ++ N
Sbjct: 356 WEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALR-EIQKALPEDAIVSTDIGNNCS 414
Query: 412 VGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
+ + L + R L G++G G I A IACP+R VV GD +G S EV
Sbjct: 415 IANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGISMNEV 472
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 172 bits (438), Expect = 1e-47
Identities = 127/445 (28%), Positives = 193/445 (43%), Gaps = 81/445 (18%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGC---VHGLA-GLSNGMINTWPIVM 107
++ I +EQ A + A+ YG LTGK G+ L+ GPG V G+A GM P+V
Sbjct: 39 IKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGGM----PMVA 94
Query: 108 ISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCY 167
I+G K +G FQ +D V + P +K+ + +P+ V + A RPG +
Sbjct: 95 ITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVH 154
Query: 168 LDLPTDVLH-----QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPL 222
L+LP D+ + + S + + ++ I++A ++ AK PL
Sbjct: 155 LELPEDIAAEETDGKPLPRSYSRRPYASPKA--------------IERAAEAIQAAKNPL 200
Query: 223 IVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-TAARS------LAI 275
I+ G GA A L + V+ TGIPF T MGKG++P+THPL+ TA S AI
Sbjct: 201 ILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHCAI 260
Query: 276 GQCDVALVVGARLNWLLHFGE-PP-KWSK--DVKFVLVDVCKEEIE-LRKPHLGLVGDAK 330
D+ + VG + E PP + D K + ++ E++ + P + +VGD
Sbjct: 261 EHADLIINVGHDVI------EKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIA 314
Query: 331 KVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNF-MTPMRIIR 389
L + + L W + K ++ + + A D F M P RI+
Sbjct: 315 NSLWQLKER-------LADQPHWDFPRFLKIREAIEAHLEEGADDD---RFPMKPQRIVA 364
Query: 390 D--AILGVGSPAPILVSEGANTMDVG----------RAVLVQTEPRCRLDAGTWGTMGVG 437
D ++ + +D G RA T C LD TMG G
Sbjct: 365 DLRKVMP---------DDDIVILDNGAYKIWFARNYRAYEPNT---CLLDNA-LATMGAG 411
Query: 438 LGYCIAAAIACPERLVVAVEGDSGF 462
L IAA + P+R V+AV GD GF
Sbjct: 412 LPSAIAAKLVHPDRKVLAVCGDGGF 436
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 170 bits (433), Expect = 4e-47
Identities = 133/465 (28%), Positives = 201/465 (43%), Gaps = 36/465 (7%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASA 69
+ G L G +FG+ G + L A +R I +EQ+AGY A
Sbjct: 2 TTMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFG 61
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS--CDQKDFGRGDFQEL-D 126
Y TG+PG+ V GPG ++ A L P++ ++G GRG E+ D
Sbjct: 62 YARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121
Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
Q+ ++ F+K+A + + +E P VA+ ++ +SGRP L++P DV Q V+ A
Sbjct: 122 QLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVAAAPP 181
Query: 187 LLKEAESAKETVTQGGIVNSD-IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
L A + D I A +L+ AK P+I G GAA A E+++L E
Sbjct: 182 LRPAPPPA---------PDPDAIAAAAALIAAAKNPMIFVGGGAAGAGE--EIRELAEML 230
Query: 246 GIPFLPTPMGKGLLPDTHPLAAT--AARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
P + G+G++ D HPL AA L Q DV + +G+RL L P
Sbjct: 231 QAPVVAFRSGRGIVSDRHPLGLNFAAAYEL-WPQTDVVIGIGSRL--ELPTFRWPWRPDG 287
Query: 304 VKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKD 363
+K + +D+ E+ KP + +V DAK + D G P A ++ K
Sbjct: 288 LKVIRIDIDPTEMRRLKPDVAIVADAKAGTA----ALLDALSKAGSKRPSRRAELRELKA 343
Query: 364 NVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPR 423
Q + V P + +R IR+A+ G I V E + PR
Sbjct: 344 AAR----QRIQAVQP--QASYLRAIREALPDDG----IFVDELSQVGFASWFAFPVYAPR 393
Query: 424 CRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 468
+ G GT+G G + A +A P+R VV++ GD GF F E
Sbjct: 394 TFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQE 438
>gnl|CDD|180368 PRK06048, PRK06048, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 561
Score = 168 bits (426), Expect = 5e-46
Identities = 126/453 (27%), Positives = 209/453 (46%), Gaps = 36/453 (7%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
K L G +FG G + + + +R I +EQ+A +AA Y TGK G+ +
Sbjct: 16 KCLEKEGVEVIFGYPGGAIIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCV 75
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
SGPG + + G++ +++ PIV ++G + G FQE D P +K
Sbjct: 76 ATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMIGNDAFQEADITGITMPITKHNYLV 135
Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQG 201
+D ++P+ + + A +GRPG +DLP DV I +K+ E K T +G
Sbjct: 136 QDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKV--ELRGYKPT-YKG 192
Query: 202 GIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD 261
I +A L+ +A++P+I G G + A EL +L E+ P T MG G +P
Sbjct: 193 NP--QQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPT 250
Query: 262 THPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKE 314
HPL+ T + AI + D+ + VGAR + + G+ ++ + K + +D+
Sbjct: 251 EHPLSLGMLGMHGTKYANYAIQESDLIIAVGARFDDRVT-GKLASFAPNAKIIHIDIDPA 309
Query: 315 EIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQ 371
EI K + +VGDAK+VL+ + K ++ W++ I WK K+ LK + +
Sbjct: 310 EISKNVKVDVPIVGDAKQVLKSLIKYVQYCDR-----KEWLDKINQWK--KEYPLKYKER 362
Query: 372 LAKDVVPFNFMTPM--RIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAG 429
+DV+ ++ + DAI I+ G + M + PR + +G
Sbjct: 363 --EDVIKPQYVIEQIYELCPDAI--------IVTEVGQHQMWAAQYFKY-KYPRTFITSG 411
Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
GTMG G I A + P++ V+ + GD F
Sbjct: 412 GLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSF 444
>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 570
Score = 165 bits (420), Expect = 4e-45
Identities = 129/489 (26%), Positives = 214/489 (43%), Gaps = 67/489 (13%)
Query: 10 QNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASA 69
Q ++ G + L G T +FG G + + + + G++ I +EQ+A +AA
Sbjct: 11 QCEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYESGLKHILTRHEQAAIHAAEG 70
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
Y +GK G++ SGPG + + GL++ +++ P+V+I+G G+ FQE D V
Sbjct: 71 YARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVG 130
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLK 189
P +K + +D+ ++ + V + A SGRPG +D+P DV ++ ++ E +
Sbjct: 131 ITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVV-- 188
Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
E K + ++ KA+S +AK+PL+ G G ++ EL + IP
Sbjct: 189 EIPGYKPEPRPDSMKLREVAKAIS---KAKRPLLYIGGGVIHSGGSEELIEFARENRIPV 245
Query: 250 LPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK 302
+ T MG G P PL T A ++A+ +CD+ L +G R + + G+ +S
Sbjct: 246 VSTLMGLGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLALGVRFDDRVT-GKLELFSP 304
Query: 303 DVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WK 359
K V +D+ E +VGD KK L M+ + W++ + WK
Sbjct: 305 HSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHML----LHMSIHTQTDE-WLQKVKTWK 359
Query: 360 -------KTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGAN---- 408
K K++ LK P +I LVSE N
Sbjct: 360 EEYPLSYKQKESELK----------------PQHVIN------------LVSELTNGEAI 391
Query: 409 -TMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
T +VG+ + PR L +G GTMG G I A +A E LV+ + GD+
Sbjct: 392 VTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDAS 451
Query: 462 FGFSAVEVE 470
F + E++
Sbjct: 452 FQMNIQELQ 460
>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase.
Members of this protein family are sulfoacetaldehyde
acetyltransferase, an enzyme of taurine utilization.
Taurine, or 2-aminoethanesulfonate, can be used by
bacteria as a source of carbon, nitrogen, and sulfur
[Central intermediary metabolism, Other].
Length = 579
Score = 165 bits (420), Expect = 4e-45
Identities = 121/476 (25%), Positives = 202/476 (42%), Gaps = 46/476 (9%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
+ L G TH FG++G + G+RFI +EQ AG+ A + +TG+ +++
Sbjct: 10 EVLVANGVTHAFGIMGSAFMDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVI 69
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
+GPG + + ++ P+V+++ K G G FQE DQ+ + F+K+
Sbjct: 70 GQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHV 129
Query: 142 KDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVS--EAEKLLKEAESAKETVT 199
+ + + + + + ERA G L++P D + I V +L + A A
Sbjct: 130 RHPSRMAEVLNRCFERAWREM-GPAQLNIPRDYFYGEIDVEIPRPVRLDRGAGGATS--- 185
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
+ +A LL EAK P+I+ G G A E K L E G P + + +
Sbjct: 186 --------LAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSF 237
Query: 260 PDTHPL--------AATAARSLAIGQCDVALVVGARLNWLLHFGEPPK-----WSKDVKF 306
P +HPL + AA L I DV L +G RL FG P+ W K+ K
Sbjct: 238 PASHPLWVGPLGYQGSKAAMKL-ISDADVVLALGTRLG---PFGTLPQYGIDYWPKNAKI 293
Query: 307 VLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI------WK 359
+ VD + I L K +G+ GDAK I + + + I W+
Sbjct: 294 IQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLAGKA-GDANRAERKAKIQAERSAWE 352
Query: 360 KT------KDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVG 413
+ + + +++ + + N++ P +++R + I+ ++ N V
Sbjct: 353 QELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLR-ELEKAMPEDAIVSTDIGNINSVA 411
Query: 414 RAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
+ L +PR L ++G G I A IA P+R VVA GD +G S E+
Sbjct: 412 NSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSMNEI 467
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 164 bits (416), Expect = 1e-44
Identities = 132/477 (27%), Positives = 224/477 (46%), Gaps = 44/477 (9%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHN 59
M L++ ++ G+ L ++L G +FG G V L + G+R I +
Sbjct: 1 MEKISLESPKS----GSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARH 56
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ A + A Y TGK G+ + SGPG + + G+++ M ++ P+++ +G + G+
Sbjct: 57 EQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIGK 116
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
FQE D V P +K+ + ++ ++P+ + + + A +GRPG +DLP DV +
Sbjct: 117 DAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV--SAL 174
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
S + T+ + I K + L +AKKP+I+ G G YA A EL
Sbjct: 175 ETDFIYDPEVNLPSYQPTLEPN---DMQIKKILKQLSKAKKPVILAGGGINYAEAATELN 231
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLL 292
E IP + T +G+G + +HPL + A ++A+ + D + +G+R + L
Sbjct: 232 AFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRL 291
Query: 293 HFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH 351
G P ++K+ K +D+ EI ++ K + +VGDAKK L+M + EP
Sbjct: 292 -TGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQM----LLAEPTVHNNTE 346
Query: 352 PWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--DAILGVGS----PAPILVSE 405
W+E + TKD K+ V ++ R+++ I +G A ++
Sbjct: 347 KWIEKV---TKD----------KNRVR-SYDKKERVVQPQAVIERIGELTNGDAIVVTDV 392
Query: 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
G + M + Q E R + +G GTMG G+ I A IA P++ V+ GD GF
Sbjct: 393 GQHQMWAAQYYPYQNE-RQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGF 448
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 161 bits (410), Expect = 1e-43
Identities = 121/426 (28%), Positives = 203/426 (47%), Gaps = 48/426 (11%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ A +AA Y TGK G+ SGPG + + G++ +++ P+++I+G + G
Sbjct: 60 EQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIGT 119
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV----- 174
FQE+D P K + +D ++ + VA+ A GRPG +D+P DV
Sbjct: 120 DAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKF 179
Query: 175 -LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+ + K+L K T+ + I++A L+ ++ +PL+ G GA +
Sbjct: 180 DYYPPEPGNTIIKILGCRPIYKPTIKR-------IEQAAKLILQSSQPLLYVGGGAIISD 232
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA 286
A E+ +L E IP T MGKG+ + HPL TA + A+ +CD+ + +GA
Sbjct: 233 AHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGMLGMHGTAYANFAVSECDLLIALGA 292
Query: 287 RLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPF 345
R + + G+ +++ + + + +D+ EI + R P + +VGD KKVL+ + + +K+ P
Sbjct: 293 RFDDRVT-GKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLKNSPN 351
Query: 346 CLGKNH--PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI 401
L W E I W+K + + K ++P +I + + AP
Sbjct: 352 LLESEQTQAWRERINRWRKE------YPLLIPKPS---TSLSPQEVINE----ISQLAP- 397
Query: 402 LVSEGANTMDVGR-----AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
+ T DVG+ A ++ +PR L + GTMG GL I A IA P LV+ +
Sbjct: 398 ---DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI 454
Query: 457 EGDSGF 462
GD+ F
Sbjct: 455 SGDASF 460
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 159 bits (403), Expect = 9e-43
Identities = 124/412 (30%), Positives = 200/412 (48%), Gaps = 26/412 (6%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ+A +AA Y +GK G+ + SGPG + + GL+ +++ P+V+ISG G
Sbjct: 50 EQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLIGT 109
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
FQE+D V +P K K I E+P+ + + A SGRPG ++D+P DV
Sbjct: 110 DAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLG 169
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNS-DIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
+++ ++ K T NS I KA +KEAKKPL G GA + A E+
Sbjct: 170 EFEYPKEI--SLKTYKPTYKG----NSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEI 223
Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWL 291
++LV+ TGIP + T M +G+L PL + A ++A+ +CD+ + +GAR +
Sbjct: 224 RELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSYAANMAMSECDLLISLGARFDDR 283
Query: 292 LHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKN 350
+ G+ +++K K + VD+ I ++ +VGD K VL+ + +E+K+E
Sbjct: 284 VT-GKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELKEENP--TTY 340
Query: 351 HPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 410
W E + + + + L E D V + P +I +G A I G + M
Sbjct: 341 KEWREILKRYNELHPLSYE---DSDEV----LKPQWVIERVGELLGDDAIISTDVGQHQM 393
Query: 411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
V + PR +G GTMG GL + A +A P+++V+ GD
Sbjct: 394 WVAQFYPF-NYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSI 444
>gnl|CDD|132918 cd07035, TPP_PYR_POX_like, Pyrimidine (PYR) binding domain of POX
and related proteins. Thiamine pyrophosphate (TPP
family), pyrimidine (PYR) binding domain of pyruvate
oxidase (POX) and related protiens subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. A
polar interaction between the conserved glutamate of the
PYR domain and the N1' of the TPP aminopyrimidine ring
is shared by most TPP-dependent enzymes, and
participates in the activation of TPP. For glyoxylate
carboligase, which belongs to this subfamily, but lacks
this conserved glutamate, the rate of the initial TPP
activation step is reduced but the ensuing steps of the
enzymic reaction proceed efficiently. The PYR and PP
domains have a common fold, but do not share strong
sequence conservation. The PP domain is not included in
this sub-family. Most TPP-dependent enzymes have the PYR
and PP domains on the same subunit although these
domains can be alternatively arranged in the primary
structure. TPP-dependent enzymes are multisubunit
proteins, the smallest catalytic unit being a
dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. POX
decarboxylates pyruvate, producing hydrogen peroxide and
the energy-storage metabolite acetylphosphate. This
subfamily includes pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC catalyzes the
conversion of pyruvate to acetaldehyde and CO2 in
alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. This subfamily also
includes the large catalytic subunit of acetohydroxyacid
synthase (AHAS). AHAS catalyzes the condensation of two
molecules of pyruvate to give the acetohydroxyacid,
2-acetolactate, a precursor of the branched chain amino
acids, valine and leucine. AHAS also catalyzes the
condensation of pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis.
Methanococcus jannaschii sulfopyruvate decarboxylase
(MjComDE) and phosphonopyruvate decarboxylase (PpyrDc)
also belong to this subfamily. PpyrDc is a homotrimeric
enzyme having the PP and PYR domains tandemly arranged
on the same subunit. It functions in the biosynthesis of
C-P compounds such as bialaphos tripeptide in
Streptomyces hygroscopicus. MjComDE is a dodecamer
having the PYR and PP domains on different subunits, it
has six alpha (PYR/ComD) subunits and six beta (PP/ComE)
subunits. MjComDE catalyzes the decarboxylation of
sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M
pathway.
Length = 155
Score = 145 bits (368), Expect = 1e-41
Identities = 56/153 (36%), Positives = 87/153 (56%)
Query: 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
++L G H+FGV G + L + + G+R+I +EQ A A Y TGKPG
Sbjct: 2 ALVEALKAEGVDHVFGVPGGAILPLLDALARSGIRYILVRHEQGAVGMADGYARATGKPG 61
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
++L SGPG + + GL+N +++ P+++I+G GRG FQE+DQV +P +K+A
Sbjct: 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITKWA 121
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
+ E+P+ + + A+SGRPG LDLP
Sbjct: 122 YRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 154 bits (392), Expect = 4e-41
Identities = 137/482 (28%), Positives = 207/482 (42%), Gaps = 74/482 (15%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASA 69
A+I K L +G H++G+ G + ++ A R Q ++FI +E+ A AA+A
Sbjct: 2 AKIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAA 61
Query: 70 YGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVE 129
Y LTGK G+ L++ GPG +H L GL + ++ P++ ++G G FQE V
Sbjct: 62 YAKLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLGTDFFQE---VN 118
Query: 130 AVKPFSKFAVKAKDITE---VPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI---SVSE 183
K F AV I +P+ V Q + A + G L +P D+ Q I +
Sbjct: 119 LEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK-GVAVLTIPDDLPAQKIKDTTNKT 177
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
+ S K DI KA L+ +AKKP+I+ G GA +A+ EL E
Sbjct: 178 VDTFRPTVPSPKPK---------DIKKAAKLINKAKKPVILAGLGAKHAKE--ELLAFAE 226
Query: 244 STGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGE 296
IP + T KG++PD HP + T A+ + D+ ++VG ++
Sbjct: 227 KAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMVGT------NYPY 280
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVE 355
K K + +D I R P ++GLVGDAKK L + + IK ++ ++E
Sbjct: 281 VDYLPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK-----HVEDRRFLE 335
Query: 356 AIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--------DAILGVGSPAPILVSEGA 407
A + ME P + P R++ DA+L V
Sbjct: 336 ACQENMAKWWKWMEEDENNASTP---IKPERVMAAIQKIADDDAVLSV------------ 380
Query: 408 NTMDVGRAVLVQT-----EPRCRLDAGTW-GTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
DVG + + +W GTMG GL IAA IA P+R +A+ GD G
Sbjct: 381 ---DVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGG 437
Query: 462 FG 463
F
Sbjct: 438 FS 439
>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit;
Reviewed.
Length = 616
Score = 155 bits (393), Expect = 4e-41
Identities = 134/489 (27%), Positives = 220/489 (44%), Gaps = 59/489 (12%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLG-VRFIA 56
+ S Q + G SL G H+FG G +P+ +A G ++ I
Sbjct: 8 IGDSTTVTPQ--RATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHIL 65
Query: 57 FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD 116
+EQ A +AA Y TGK G+ SGPG + + G++ +++ P+V+I+G +
Sbjct: 66 VRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPA 125
Query: 117 FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV-- 174
G FQE D P K + +D +++ + VA+ A SGRPG +D+P DV
Sbjct: 126 IGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQ 185
Query: 175 -LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+ V + TV I+ A+ L++EA++PL+ G GA A
Sbjct: 186 EEFDYVPVEPGSVKPP---GYRPTVK---GNPRQINAALKLIEEAERPLLYVGGGAISAG 239
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGA 286
A ELK+L E IP T MGKG + HPL+ TA + A+ +CD+ + VGA
Sbjct: 240 AHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLGMHGTAYANFAVTECDLLIAVGA 299
Query: 287 RLNWLLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEI 340
R F G+ +++ K + +D+ E+ + R+P + +VGD +KVL + +
Sbjct: 300 R------FDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353
Query: 341 KDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398
+ + W+E I WK+ + V + + P ++ +L V
Sbjct: 354 LEPTT-PPRTQAWLERINRWKQD----YPLVVPPYEGEIY-----P----QEVLLAVRDL 399
Query: 399 APILVSEGANTMDVGR-----AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLV 453
AP + T DVG+ A ++ PR + + GTMG G+ + +A P+ V
Sbjct: 400 AP----DAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEV 455
Query: 454 VAVEGDSGF 462
+ + GD+ F
Sbjct: 456 ICIAGDASF 464
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 153 bits (389), Expect = 7e-41
Identities = 133/494 (26%), Positives = 218/494 (44%), Gaps = 64/494 (12%)
Query: 5 ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAG 64
++ + G + ++L G +FG G V L + G+ I +EQ A
Sbjct: 7 MSSKTEEKLMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYDCGIPHILTRHEQGAI 66
Query: 65 YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE 124
+AA Y ++GKPG+++ SGPG + + GL++ MI++ P+V+ +G G FQE
Sbjct: 67 HAAEGYARISGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIGSDAFQE 126
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
D + P +K + + +++P+ + + A +GRPG +D+P D+ V E
Sbjct: 127 ADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDM-----VVEEG 181
Query: 185 EKLLKEAESAKETVTQGGIVNSD-----IDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
E + G N + I K V + AKKP+I+ G G +A+A EL
Sbjct: 182 EF-----CYDVQMDLPGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELT 236
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPL-------AATAARSLAIGQCDVALVVGARLN--- 289
E IP + T +G G P HPL T ++A+ +CD+ + +GAR +
Sbjct: 237 SYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTYTANMALYECDLLINIGARFDDRV 296
Query: 290 --WLLHFGEPPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVL-EMINKEIKDEPF 345
L +F +K+ +D+ EI P + +V DAK+ L ++ +E K
Sbjct: 297 TGNLAYF------AKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEGKK--- 347
Query: 346 CLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403
+H W+ + WK+ K + K P + I + + + I+
Sbjct: 348 --ENHHEWLSLLKNWKEKYPLSYKRNSESIK---------PQKAI-EMLYEITKGEAIV- 394
Query: 404 SEGANTMDVGRAVL--VQTEPRCRLD----AGTWGTMGVGLGYCIAAAIACPERLVVAVE 457
T DVG+ + Q P D +G GTMG GL I A +A P+ VVA+
Sbjct: 395 -----TTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIV 449
Query: 458 GDSGFGFSAVEVEV 471
GD GF + E+ V
Sbjct: 450 GDGGFQMTLQELSV 463
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 152 bits (385), Expect = 3e-40
Identities = 113/423 (26%), Positives = 189/423 (44%), Gaps = 43/423 (10%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
+R I +EQ AG+ A TGKP + + SGPG + + +++ +++ P+V I+G
Sbjct: 52 IRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQ 111
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
G FQE+D P +K +DI E+P+ ++ A SGRPG ++D+P
Sbjct: 112 VPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIP 171
Query: 172 TDVLHQTISVSE-AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA 230
DV I + K+A A + I A +++ AK+P++ G G
Sbjct: 172 KDVQTAVIELEALPAPAEKDAAPAFDE--------ESIRDAAAMINAAKRPVLYLGGGVI 223
Query: 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-----ATAARS--LAIGQCDVALV 283
+ A ++L E +P T M G+LP HPL+ ARS + + D+ +V
Sbjct: 224 NSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNYILQEADLLIV 283
Query: 284 VGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKD 342
+GAR + G+ ++ + K + VD+ + E+ ++++PH+ + D VL + ++
Sbjct: 284 LGARFD-DRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEA 342
Query: 343 EPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNF------MTPMRIIRDAILGVG 396
+P W + + L+ E P ++ +I V
Sbjct: 343 QP-----RAEWHQLV------ADLQREF-------PCPIPKADDPLSHYGLINAVAACVD 384
Query: 397 SPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
A I G + M +A + PR L +G GTMG GL I AA+A PER V+
Sbjct: 385 DNAIITTDVGQHQMWTAQAYPLN-RPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCF 443
Query: 457 EGD 459
GD
Sbjct: 444 SGD 446
>gnl|CDD|215786 pfam00205, TPP_enzyme_M, Thiamine pyrophosphate enzyme, central
domain. The central domain of TPP enzymes contains a
2-fold Rossman fold.
Length = 136
Score = 139 bits (354), Expect = 8e-40
Identities = 51/137 (37%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 208 IDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-- 265
IDKA LL AK+P+I+ G G + A EL+ L E GIP + T MGKG P+ HPL
Sbjct: 1 IDKAAELLASAKRPVILAGGGVRRSGASEELRALAEKLGIPVVTTLMGKGAFPEDHPLYL 60
Query: 266 -----AATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIE-LR 319
T A + A+ + D+ L +GAR + G P+++ D K + +D+ EI
Sbjct: 61 GMLGMHGTPAANEALEEADLVLAIGARFDD-RGTGSLPEFAPDAKIIHIDIDPAEIGKNY 119
Query: 320 KPHLGLVGDAKKVLEMI 336
+ +VGDAK+ LE +
Sbjct: 120 PVDVPIVGDAKEALEAL 136
>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
Acetolactate synthase (EC 2.2.1.6) combines two
molecules of pyruvate to yield 2-acetolactate with the
release of CO2. This reaction may be involved in either
valine biosynthesis (biosynthetic) or conversion of
pyruvate to acetoin and possibly to 2,3-butanediol
(catabolic). The biosynthetic type, described by
TIGR00118, is also capable of forming
acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
isoleucine biosynthesis. The family described here, part
of the same larger family of thiamine
pyrophosphate-dependent enzymes (pfam00205, pfam02776)
is the catabolic form, generally found associated with
in species with acetolactate decarboxylase and usually
found in the same operon. The model may not encompass
all catabolic acetolactate synthases, but rather one
particular clade in the larger TPP-dependent enzyme
family [Energy metabolism, Fermentation].
Length = 539
Score = 149 bits (379), Expect = 1e-39
Identities = 123/470 (26%), Positives = 208/470 (44%), Gaps = 39/470 (8%)
Query: 16 GNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG 75
G L L G ++FG+ G + + + G+ I +EQ+A + A A G +TG
Sbjct: 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALEDKGIELIVVRHEQNAAFMAQAVGRITG 60
Query: 76 KPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFS 135
KPG+ L SGPGC + + GL+ P+V I G + D + Q +D V +P +
Sbjct: 61 KPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLLKLTHQSMDNVALFRPIT 120
Query: 136 KFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAK 195
K++ + +D + + VA A SG+PG ++ LP DV+ +SV +A A
Sbjct: 121 KYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSV--------KAIPAS 172
Query: 196 ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
G + ID+ ++ AK P+++ G A+ +++L++ T +P + T G
Sbjct: 173 YAPKLGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQG 232
Query: 256 KGLLP-DTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSK--DVK 305
G + + L + Q D+ + +G + + + EP W+ D
Sbjct: 233 AGAVSRELEDHFFGRVGLFRNQPGDRLLKQADLVITIG--YDPIEY--EPRNWNSENDAT 288
Query: 306 FVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
V +DV +I+ +P L LVGD L+++ + I P AI +
Sbjct: 289 IVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIPGYEL-----PPDALAILED---- 339
Query: 365 VLKMEVQLAKDVVPFNF----MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT 420
LK + + VP + P+ II+ V + V G++ + + R
Sbjct: 340 -LKQQREALDR-VPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARY-FRSY 396
Query: 421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
R L + T+GV L + I AA+ P VV+V GD GF FS++E+E
Sbjct: 397 RARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELE 446
>gnl|CDD|180780 PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 587
Score = 149 bits (379), Expect = 2e-39
Identities = 133/480 (27%), Positives = 217/480 (45%), Gaps = 44/480 (9%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHN 59
+ +E + A G + K+L+ G ++G G V + + Q ++ + +
Sbjct: 8 FSTAESLSPPAADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRH 67
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
EQ+A +AA Y TGK G+ L SGPG + + G++ +++ P+V+ISG G+
Sbjct: 68 EQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQ 127
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
FQE D V +P K KD+ ++ + V + A +GRPG +D+P DV
Sbjct: 128 DAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPC 187
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
+ + E S VT+G + I KAVSLL AK+P I G G A A EL+
Sbjct: 188 EYEYPKSV--EMRSYN-PVTKGH--SGQIRKAVSLLLSAKRPYIYTGGGVILANASRELR 242
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLL 292
+L + G P T MG G P + + T ++A+ CDV + +GAR + +
Sbjct: 243 QLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAIGARFDDRV 302
Query: 293 HFGEPPKW-SKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVL-EMINK----EIKDEPF 345
G P + S+ K + +D+ I R K + +VGD K+VL E+I + E +
Sbjct: 303 -IGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDAD 361
Query: 346 CLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE 405
L + W + I + LK + +++ P ++ A +
Sbjct: 362 ALAQ---WWKQIEGWRSRDCLKYD--RESEII-----KPQYVVEKLWELTDGDAFV---- 407
Query: 406 GANTMDVGRAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
DVG+ + EPR +++G GTMGVGL Y + +A P+ VV + G+
Sbjct: 408 ---CSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGE 464
>gnl|CDD|217224 pfam02776, TPP_enzyme_N, Thiamine pyrophosphate enzyme, N-terminal
TPP binding domain.
Length = 172
Score = 137 bits (348), Expect = 1e-38
Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
A++L G H+FGV G + L + + G+R++ +EQ AG+AA Y TGKPG+
Sbjct: 8 AEALKALGVDHVFGVPGSSILPLLDALAKSPGIRYVLTRHEQGAGFAADGYARATGKPGV 67
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFA 138
+L SGPG + L GL+N ++ P+++ISG D GRG Q ELDQ+ +P +K+A
Sbjct: 68 VLVTSGPGATNALTGLANAYVDGIPVLVISGQVPTSDLGRGGLQEELDQLALFRPVTKWA 127
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
+ E+P+ + + A+SGRPG YL+LP DV + + E
Sbjct: 128 ERVTSPDEIPEALDRAFRAALSGRPGPVYLELPLDVQLEEVDEPE 172
>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional.
Length = 535
Score = 145 bits (368), Expect = 5e-38
Identities = 125/462 (27%), Positives = 193/462 (41%), Gaps = 47/462 (10%)
Query: 24 LSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTV 83
L +G +FG+ G+ L G+R + +EQ AG+ A Y ++GKPG+ +
Sbjct: 12 LEAYGVETVFGIPGVHTVELYRGLAGSGIRHVTPRHEQGAGFMADGYARVSGKPGVCFII 71
Query: 84 SGPGCVHGLAGLSNGMINTWPIVMISG--SCDQKDFGRGDFQEL-DQVEAVKPFSKFAVK 140
+GPG + + ++ P+++IS GRG EL DQ V + F+
Sbjct: 72 TGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHT 131
Query: 141 AKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQ 200
++P+ +A+ S RP ++++P DVL + A+ LL + +
Sbjct: 132 LMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL-----AAPADHLLP---APPTRPAR 183
Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
G + + +A L A++PLI+ G GA A L+ L E P T KGLLP
Sbjct: 184 PGPAPAALAQAAERLAAARRPLILAGGGA--LAAAAALRALAERLDAPVALTINAKGLLP 241
Query: 261 DTHPLAATAARSLA-----IGQCDVALVVGARLN-------WLLHFGEPPKWSKDVKFVL 308
HPL A++SL I + DV L VG L + F P + +
Sbjct: 242 AGHPLLLGASQSLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPG------ELIR 295
Query: 309 VDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLK 367
+D+ +++ P L LVGDA+ LE + + + W A V
Sbjct: 296 IDIDPDQLARNYPPALALVGDARAALEALLARLPGQA----AAADWGAA-------RVAA 344
Query: 368 MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLD 427
+ L + P + D IL P I V + + G PR +
Sbjct: 345 LRQALRAEWDP--LTAAQVALLDTILAA-LPDAIFVGDSTQPVYAGNLYFDADAPRRWFN 401
Query: 428 AGT-WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVE 468
A T +GT+G GL I AA+ PER VV + GD G F+ E
Sbjct: 402 ASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPE 443
>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase.
Length = 585
Score = 145 bits (368), Expect = 7e-38
Identities = 111/430 (25%), Positives = 196/430 (45%), Gaps = 44/430 (10%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
+R + +EQ +AA Y +GK G+ + SGPG + + GL++ ++++ P+V I+G
Sbjct: 52 IRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQ 111
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
++ G FQE VE + +K D+ ++P+ + + A SGRPG +D+P
Sbjct: 112 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIP 171
Query: 172 TDVLHQTISV----------SEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKP 221
D+ Q ++V +L K E ++ +++ V L+ E+K+P
Sbjct: 172 KDI-QQQLAVPNWNQPMKLPGYLSRLPKPPEKSQ------------LEQIVRLISESKRP 218
Query: 222 LIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLA 274
++ G G + E L++ VE TGIP T MG G P + L+ T + A
Sbjct: 219 VVYVGGGCLNSSEE--LREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHGTVYANYA 276
Query: 275 IGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVL 333
+ D+ L G R + + G+ ++ V +D+ EI + ++PH+ + D K L
Sbjct: 277 VDSADLLLAFGVRFDDRVT-GKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLAL 335
Query: 334 EMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAIL 393
+ +NK +++ W + ++ + L D +P P I+ +L
Sbjct: 336 QGLNKLLEERKAKRPDFSAWRAELDEQKEKFPLSYPTF--GDAIP-----PQYAIQ--VL 386
Query: 394 GVGSPAPILVSEGANTMDVGRAVLVQ-TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERL 452
+ ++S G + A + EPR L +G G MG GL I AA A P+ +
Sbjct: 387 DELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAI 446
Query: 453 VVAVEGDSGF 462
VV ++GD F
Sbjct: 447 VVDIDGDGSF 456
>gnl|CDD|236098 PRK07789, PRK07789, acetolactate synthase 1 catalytic subunit;
Validated.
Length = 612
Score = 145 bits (369), Expect = 8e-38
Identities = 128/464 (27%), Positives = 210/464 (45%), Gaps = 48/464 (10%)
Query: 22 KSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKP 77
+SL G +FG+ G +PV L + VR + +EQ AG+AA Y TG+
Sbjct: 39 RSLEELGVDVVFGIPGGAILPVYDPLFDST---KVRHVLVRHEQGAGHAAEGYAQATGRV 95
Query: 78 GILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKF 137
G+ + SGPG + + +++ +++ P+V I+G + G FQE D V P +K
Sbjct: 96 GVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKH 155
Query: 138 AVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKET 197
D ++P+ +A+ A +GRPG +D+P D L + S ++
Sbjct: 156 NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRM---DLPGYRP 212
Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
VT+ I +A L+ A++P++ G G A A EL++L E TGIP + T M +G
Sbjct: 213 VTKPH--GKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARG 270
Query: 258 LLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHF-----GEPPKWSKDVK 305
PD+HP T A A+ + D+ + +GAR F G+ ++ D K
Sbjct: 271 AFPDSHPQHLGMPGMHGTVAAVAALQRSDLLIALGAR------FDDRVTGKLDSFAPDAK 324
Query: 306 FVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
+ D+ EI + R + +VGD K+V+ + ++ E GK P + A W
Sbjct: 325 VIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALRAEHAAGGK--PDLTAWWAYLDG- 381
Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR-----AVLVQ 419
+ L D + P +I + + P I V+ VG+ A +
Sbjct: 382 -WRETYPLGYDEPSDGSLAPQYVIE-RLGEIAGPDAIYVA------GVGQHQMWAAQFID 433
Query: 420 TE-PRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
E PR L++G GTMG + + A + P++ V A++GD F
Sbjct: 434 YEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGDGCF 477
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 144 bits (364), Expect = 2e-37
Identities = 119/443 (26%), Positives = 194/443 (43%), Gaps = 70/443 (15%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGS 111
V I +EQ+A + A Y TGK G++L SGPG + + G++ +++ P+V++SG
Sbjct: 43 VEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQ 102
Query: 112 CDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLP 171
G FQE D V +P K + K +E+P+ + + A SGRPG +D+P
Sbjct: 103 VPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIP 162
Query: 172 TDVLHQTISVSEAEKLLKE-AESAK----ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226
D+ + AEK E + K +G + I KAV +L AK+P+I G
Sbjct: 163 KDM------TNPAEKFEYEYPKKVKLRSYSPAVRGH--SGQIRKAVEMLLAAKRPVIYSG 214
Query: 227 KGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCD 279
G A L +L +P T MG G P T + T ++A+ D
Sbjct: 215 GGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHAD 274
Query: 280 VALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVL-EMIN 337
V L VGAR + + G P K+ + K + +D+ I + K + +VG + VL EM+
Sbjct: 275 VILAVGARFDDRVTNG-PAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLA 333
Query: 338 --KEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFN-----FMTPMRIIR- 389
KEI ++P + + A WK+ E + + P++ + P +++
Sbjct: 334 ILKEIGEKP-----DKEALAAWWKQID------EWRGRHGLFPYDKGDGGIIKPQQVVET 382
Query: 390 -------DAILGVGSPAPILVSEGANTMDVGRAVLVQT------EPRCRLDAGTWGTMGV 436
DA + T DVG+ + +P +++G GTMG
Sbjct: 383 LYEVTNGDAYV---------------TSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGF 427
Query: 437 GLGYCIAAAIACPERLVVAVEGD 459
GL + +A P++ V V G+
Sbjct: 428 GLPAAMGVKLAFPDQDVACVTGE 450
>gnl|CDD|213633 TIGR01504, glyox_carbo_lig, glyoxylate carboligase. Glyoxylate
carboligase, also called tartronate-semialdehyde
synthase, releases CO2 while synthesizing a single
molecule of tartronate semialdehyde from two molecules
of glyoxylate. It is a thiamine pyrophosphate-dependent
enzyme, closely related in sequence to the large subunit
of acetolactate synthase. In the D-glycerate pathway,
part of allantoin degradation in the Enterobacteriaceae,
tartronate semialdehyde is converted to D-glycerate and
then 3-phosphoglycerate, a product of glycolysis and
entry point in the general metabolism.
Length = 588
Score = 142 bits (359), Expect = 1e-36
Identities = 136/458 (29%), Positives = 207/458 (45%), Gaps = 31/458 (6%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
G T FGV G + A +A G+R I + + A + A Y T G G+ + S
Sbjct: 17 GITTAFGVPGAAINPFYSALKA-HGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 75
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GP + GL + ++ PI+ I+G + + DFQ +D KP SK AV ++
Sbjct: 76 GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIAAIAKPVSKMAVTVREA 135
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
VP+ + Q SGRPG +DLP DV V+E E E V +
Sbjct: 136 ALVPRVLQQAFHLMRSGRPGPVLIDLPFDV-----QVAEIEFDPDTYEPL--PVYKPAAT 188
Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
+ I+KAV +L A++PLIV G G A A L++ E TG+P +PT MG G +PD H
Sbjct: 189 RAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHE 248
Query: 265 LAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVDVCKEE 315
L A T+ R + + + D +G R W H G +++ KFV VD+ +
Sbjct: 249 LMAGMVGLQTSHRYGNATLLESDFVFGIGNR--WANRHTGSVDVYTEGRKFVHVDIEPTQ 306
Query: 316 I-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIW-KKTKDNVLKMEVQLA 373
I + P LG+V DAK L+++ E+ E G+ E W + + +
Sbjct: 307 IGRVFAPDLGIVSDAKAALKLL-VEVAQELKKAGRLPDRSE--WAADCQQRKRTLLRKTH 363
Query: 374 KDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 433
D VP + P R+ + G + + G + + G +L +PR ++ G G
Sbjct: 364 FDNVP---VKPQRVYEEMNKAFGRDVCYVTTIGLSQI-AGAQMLHVYKPRHWINCGQAGP 419
Query: 434 MGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
+G + + A P+R VVA+ GD F F E+ V
Sbjct: 420 LGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAV 457
>gnl|CDD|183066 PRK11269, PRK11269, glyoxylate carboligase; Provisional.
Length = 591
Score = 142 bits (359), Expect = 1e-36
Identities = 140/473 (29%), Positives = 203/473 (42%), Gaps = 61/473 (12%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
G T FGV G + A R G+R I + + A + A Y T G G+ + S
Sbjct: 18 GVTTAFGVPGAAINPFYSAMRKHG-GIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 76
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GP + GL + ++ PI+ I+G + + DFQ +D KP +K+AV ++
Sbjct: 77 GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVREP 136
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI----SVSEAEKLLKEAESAKETVTQ 200
VP+ Q SGRPG +DLP DV I E + K A + +
Sbjct: 137 ALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPVYKPAATRAQ---- 192
Query: 201 GGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 260
I+KA+ +L A++PLIV G G A A L + E TG+P +PT MG G +P
Sbjct: 193 -------IEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIP 245
Query: 261 DTHPLAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVDV 311
D HPL A T+ R + + D L +G R W H G ++K KFV VD+
Sbjct: 246 DDHPLMAGMVGLQTSHRYGNATLLASDFVLGIGNR--WANRHTGSVEVYTKGRKFVHVDI 303
Query: 312 CKEEI-ELRKPHLGLVGDAKKVLEM---INKEIKDEPFCLGKNHPWVEAIW--KKTKDNV 365
+I + P LG+V DAK LE+ + +E K L WV K+T
Sbjct: 304 EPTQIGRVFGPDLGIVSDAKAALELLVEVAREWKAAG-RLPDRSAWVADCQERKRT---- 358
Query: 366 LKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-------GANTMDVGRAVLV 418
+ + D VP + P R+ + G VS A + V +
Sbjct: 359 --LLRKTHFDNVP---IKPQRVYEEMNKAFG-RDTCYVSTIGLSQIAAAQFLHVYK---- 408
Query: 419 QTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
PR ++ G G +G + + A P+R VVA+ GD F F E+ V
Sbjct: 409 ---PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAV 458
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 141 bits (357), Expect = 2e-36
Identities = 118/439 (26%), Positives = 200/439 (45%), Gaps = 72/439 (16%)
Query: 51 GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
GV + +EQ A AA Y TGK G+ + SGPG + + GL++ ++++ P+V I+G
Sbjct: 38 GVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITG 97
Query: 111 SCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDL 170
G FQE+D + +K + + + E+P+ +A+ E A SGRPG +D+
Sbjct: 98 QVSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDI 157
Query: 171 PTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA 230
P D+ ++ E E L E+ +++++A +LL +AKKP++ G G
Sbjct: 158 PKDIQ---LAEGELEPHLTTVENEPA------FPAAELEQARALLAQAKKPVLYVGGGVG 208
Query: 231 YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALV 283
A A L++ + +TG+P + T G G + HP + T A +LA+ +CD+ +
Sbjct: 209 MAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANLAVQECDLLIA 268
Query: 284 VGARLNWLLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMIN 337
VGAR F G+ ++ K + +D+ EI +LR+ H+ L GD +L +
Sbjct: 269 VGAR------FDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQ 322
Query: 338 KEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGS 397
+ + + W + + + + P G
Sbjct: 323 QPLNID--------AWRQ-------------HCAQLRAEHAWRYDHP---------GEAI 352
Query: 398 PAPIL---VSE--GANTM---DVGR-----AVLVQ-TEPRCRLDAGTWGTMGVGLGYCIA 443
AP L +S+ A+T+ DVG+ A ++ T P + + GTMG GL I
Sbjct: 353 YAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIG 412
Query: 444 AAIACPERLVVAVEGDSGF 462
A +A P+ V+ V GD F
Sbjct: 413 AQVARPDDTVICVSGDGSF 431
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 140 bits (355), Expect = 3e-36
Identities = 122/500 (24%), Positives = 211/500 (42%), Gaps = 105/500 (21%)
Query: 19 LAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
L SL G ++FG+ G + + + G I +EQ+A + A+A G LTGKPG
Sbjct: 10 LVVDSLINQGVKYVFGIPGAKIDRVFDALEDSGPELIVTRHEQNAAFMAAAIGRLTGKPG 69
Query: 79 ILLTVSGPGCVHGLAGLSNGMI--NTW--PIVMISGSCDQKDFGRGDFQELDQVEAVKPF 134
++L SGPG + L+ G++ P+V I G + D + Q +D V +P
Sbjct: 70 VVLVTSGPGV----SNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPI 125
Query: 135 SKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESA 194
+K++ + +D + + +A A SGRPG ++ LP DV+ ++ +A +
Sbjct: 126 TKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTS--------KAIAP 177
Query: 195 KETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPM 254
G DI+ L+K AK P+++ G A+ +++L+E T +P + T
Sbjct: 178 LSKPKLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQ 237
Query: 255 GKGLLPDTHPLAAT-AARSLAIG------------QCDVALVVGARLNWLLHFG----EP 297
G++ L R +G + D+ + +G + EP
Sbjct: 238 AAGVIS--RELEDHFFGR---VGLFRNQPGDELLKKADLVITIG--------YDPIEYEP 284
Query: 298 PKWSK--DVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWV 354
W+ D + +DV EI+ +P L+GD L+++ +++ L
Sbjct: 285 RNWNSEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD--GLSLSPQS--- 339
Query: 355 EAIWKKTKDNVLKM-EVQLAKDVVPFNFMTPMRII---RDAI-------LGVGS------ 397
I ++ + + ++ E + + P+RII +D + + VGS
Sbjct: 340 LEILEELRAQLEELAERPARLEEGAVH---PLRIIRALQDIVTDDTTVTVDVGSHYIWMA 396
Query: 398 -------PAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPE 450
P +L S G +QT +GV L + IAAA+ P
Sbjct: 397 RYFRSYEPRHLLFSNG-----------MQT-------------LGVALPWAIAAALVRPG 432
Query: 451 RLVVAVEGDSGFGFSAVEVE 470
+ VV+V GD GF FSA+E+E
Sbjct: 433 KKVVSVSGDGGFLFSAMELE 452
>gnl|CDD|226469 COG3960, COG3960, Glyoxylate carboligase [General function
prediction only].
Length = 592
Score = 139 bits (352), Expect = 9e-36
Identities = 134/460 (29%), Positives = 207/460 (45%), Gaps = 35/460 (7%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLT-GKPGILLTVS 84
G T FGV G + A R G+R I + + A + A Y T G G+ + S
Sbjct: 18 GITTAFGVPGAAINPFYSALRKHG-GIRHILARHVEGASHMAEGYTRATAGNIGVCIGTS 76
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GP + GL + ++ PI+ I+G + + DFQ +D KP SK+AV ++
Sbjct: 77 GPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREP 136
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
VP+ + Q SGRPG +DLP DV V+E E E V +
Sbjct: 137 ALVPRVLQQAFHLMRSGRPGPVLIDLPFDV-----QVAEIEFDPDMYEPL--PVYKPAAT 189
Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
+KA+++L +A++PLIV G G A A L++ E TG+P +PT MG G +PD HP
Sbjct: 190 RVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHP 249
Query: 265 LAA------TAAR--SLAIGQCDVALVVGARLNWL-LHFGEPPKWSKDVKFVLVDVCKEE 315
L A T+ R + + D+ +G R W H G +++ KF+ VD+ +
Sbjct: 250 LMAGMVGLQTSHRYGNATLLASDMVFGIGNR--WANRHTGSVEVYTEGRKFIHVDIEPTQ 307
Query: 316 I-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGK---NHPWVEAIWKKTKDNVLKMEVQ 371
I + P LG+V DAK L ++ ++ E GK WV ++ + + K
Sbjct: 308 IGRVFCPDLGIVSDAKAALTLL-LDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHF- 365
Query: 372 LAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTW 431
D VP + P R+ + G + + G + + L +PR ++ G
Sbjct: 366 ---DNVP---VKPQRVYEEMNKAFGRDVCYVTTIGLSQI-AAAQFLHVFKPRHWINCGQA 418
Query: 432 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
G +G + + A P+R VVA+ GD F F E+ V
Sbjct: 419 GPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAV 458
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 128 bits (325), Expect = 3e-35
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 400 PILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
I+VS+G NTMD R +L +PR RLDAGT+GT+GVGLGY IAAA+A P++ VV VEGD
Sbjct: 16 AIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGD 75
Query: 460 SGFGFSAVEVE 470
FGFS +E+E
Sbjct: 76 GAFGFSGMELE 86
>gnl|CDD|236380 PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 595
Score = 135 bits (341), Expect = 3e-34
Identities = 135/476 (28%), Positives = 210/476 (44%), Gaps = 42/476 (8%)
Query: 7 QNSQNA-QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAG 64
Q S Q+ G + ++L G H+FG G V + + Q ++ I +EQ AG
Sbjct: 3 QKSHMPRQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAG 62
Query: 65 YAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQE 124
+AA Y TGKPG++L SGPG + + L + ++++ P+V I+G G FQE
Sbjct: 63 HAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIGSDAFQE 122
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
D V +P +K KD+ ++ + + + A SGRPG +D+P DV T + +
Sbjct: 123 CDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYTPP 182
Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA--AYARAEGELKKLV 242
+K + + +G I +AV LL AK+P+I G G + A L++LV
Sbjct: 183 QKA--PVHVSYQPKVKGDA--EAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELV 238
Query: 243 ESTGIPFLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFG 295
E TG P T MG G P + + T ++A+ CDV L VGAR + + G
Sbjct: 239 ELTGFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMAMHDCDVMLCVGARFDDRIT-G 297
Query: 296 EPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH--P 352
+S + K + +D+ I + + + ++GD VLE + + K K
Sbjct: 298 RLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALAD 357
Query: 353 WVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTM 410
W I W+ DV+ M I R L G I T
Sbjct: 358 WWGQIARWRARNSLAYTPS----DDVI----MPQYAIQRLYELTKGRDTYI-------TT 402
Query: 411 DVGRAVL--VQ----TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460
+VG+ + Q EP + +G GTMG GL + IA P+ LV+ + GD+
Sbjct: 403 EVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDA 458
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 134 bits (340), Expect = 4e-34
Identities = 118/461 (25%), Positives = 198/461 (42%), Gaps = 30/461 (6%)
Query: 35 VVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTG--KPGILLTVSGPGCVHGL 92
+ G PV L + A G+R + E+ A + A Y T + G+ GPG +
Sbjct: 38 LFGFPVNELFDAAAAAGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGAENAF 97
Query: 93 AGLSNGMINTWPIVMISGSCDQKDFGRGDFQ-ELDQVEAVKPFSKFAVKAKDITEVPKCV 151
G++ ++ P++ + + G D + + + +K+ + EVP+ +
Sbjct: 98 GGVAQAYGDSVPVLFLPTGYPR---GSTDVAPNFESLRNYRHITKWCEQVTLPDEVPELM 154
Query: 152 AQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKA 211
+ R +GRPG L+LP DVL + + + ++ + V ++ +A
Sbjct: 155 RRAFTRLRNGRPGPVVLELPVDVLAEELDELPLDH-----RPSRRSRPGADPV--EVVEA 207
Query: 212 VSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA----- 266
+LL A++P+I G+G YA+A ELK+L E IP + T GK P+ HPLA
Sbjct: 208 AALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGG 267
Query: 267 ----ATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPH 322
AT A L + DV +G L ++G P K + +D + H
Sbjct: 268 RARPATVAHFLR--EADVLFGIGCSLT-RSYYGLPMPEGKTIIHSTLDDADLNKDYPIDH 324
Query: 323 LGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVL-KMEVQLAKDVVPFNF 381
GLVGDA VL+ + +E++ V A + + L K +L D P N
Sbjct: 325 -GLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPIN- 382
Query: 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 441
P R++ + V I+ + + D V + P L G +G GLG
Sbjct: 383 --PYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLA 440
Query: 442 IAAAIACPERLVVAVEGDSGFGFSAVEVEVWLSCIIMISSI 482
+ A +A P+ LV+ + GD+ FG + ++ E + I I +I
Sbjct: 441 MGAKLARPDALVINLWGDAAFGMTGMDFETAVRERIPILTI 481
>gnl|CDD|235700 PRK06112, PRK06112, acetolactate synthase catalytic subunit;
Validated.
Length = 578
Score = 133 bits (336), Expect = 1e-33
Identities = 124/489 (25%), Positives = 203/489 (41%), Gaps = 49/489 (10%)
Query: 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAAS 68
A++L G +FG +P ++L A +G+R IA+ E + G A
Sbjct: 9 GFTLNGTVAHAIARALKRHGVEQIFGQ-SLP-SALFLAAEAIGIRQIAYRTENAGGAMAD 66
Query: 69 AYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQV 128
Y ++GK ++ +GP +A L+ + + PIV + ++ R FQELD +
Sbjct: 67 GYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHI 126
Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
+ +K+ + + V Q A SGRPG L LP D+L + + A
Sbjct: 127 ALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLT---AAAAAPAAP 183
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ + + + +A SLL +A++P++V G G + A L L G+P
Sbjct: 184 RSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLP 243
Query: 249 FLPTPMGKGLLPDTHPLAA------TAARSLA------IGQCDVALVVGARLN------W 290
T MGKG + +THPL+ RS + + DV L+VG R N W
Sbjct: 244 VATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSW 303
Query: 291 LLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIK--DEPFCLG 348
L + + +++ +DV EE+ L LVGDA+ L + ++ D G
Sbjct: 304 SL-------YPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALRGRDLAARAG 356
Query: 349 KNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEG-- 406
+ AI + + D P + P RI+ + + V + I+V++
Sbjct: 357 RRAALEPAIAAGREAHREDSAPVALSDASP---IRPERIMAE-LQAVLTGDTIVVADASY 412
Query: 407 -----ANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
AN + RA + PR G G +G G+ I A +A P V+ + GD G
Sbjct: 413 SSIWVANFLTARRAGMRFLTPR-----GLAG-LGWGVPMAIGAKVARPGAPVICLVGDGG 466
Query: 462 FGFSAVEVE 470
F E+E
Sbjct: 467 FAHVWAELE 475
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 133 bits (335), Expect = 1e-33
Identities = 117/468 (25%), Positives = 203/468 (43%), Gaps = 41/468 (8%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRA-VQLGVRFIAFHNEQSAGYAASAY 70
+ G ++ +SL G H+FG G V + + + G+ I +EQ+A + A Y
Sbjct: 2 EMLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGY 61
Query: 71 GYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEA 130
TGK G++L SGPG + + G++ +++ P+V++SG G FQE D +
Sbjct: 62 ARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIGNDAFQECDMIGI 121
Query: 131 VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKE 190
+P K + KD ++P+ + + A +GRPG +DLP D L+ I +
Sbjct: 122 SRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYEYPESIK 181
Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
S T + I + + L AKKP++ G GA + A+ ++ +L E +P +
Sbjct: 182 MRSYNPTTSGH---KGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVV 238
Query: 251 PTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARL-----NWLLHFGEPP 298
T MG G P TH + ++A+ D+ +G R N L
Sbjct: 239 STLMGLGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFGIGVRFDDRTTNNL------E 292
Query: 299 KWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAI 357
K+ + + +D+ I + + +VG A KVL+ + + + + + +
Sbjct: 293 KYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLDESG--ETNDEAAIASW 350
Query: 358 WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR--- 414
W + V + LA D + P ++I + + + + + S DVG+
Sbjct: 351 WNEI--EVWRSRNCLAYDKSS-ERIKPQQVI-ETLYKLTNGDAYVAS------DVGQHQM 400
Query: 415 -AVLVQ--TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
A L +PR +++G GTMG GL + A P+ VV V GD
Sbjct: 401 FAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGD 448
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 132 bits (334), Expect = 2e-33
Identities = 125/470 (26%), Positives = 203/470 (43%), Gaps = 49/470 (10%)
Query: 14 IDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGY 72
+ G + +SL G +FG G V + + +G + + +EQ+A + A
Sbjct: 4 LSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLAR 63
Query: 73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
TG+ G++L SGPG + + G++ +++ P+V++SG G FQE D V +
Sbjct: 64 ATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISR 123
Query: 133 PFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAE 192
P K + K ++P+ + + A SGRPG +DLP D+L+ +
Sbjct: 124 PVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMR 183
Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPT 252
S T QG I +A+ L AKKP++ G GA A +LK+LVE +P + +
Sbjct: 184 SYNPTT-QGH--KGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSS 240
Query: 253 PMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARL-----NWLLHFGEPPKW 300
MG G P TH + T ++ + DV VG R N L K+
Sbjct: 241 LMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNL------AKY 294
Query: 301 SKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKV----LEMINKEIKDEPFCLGKNHPWVE 355
+ + +D+ I + +VGDA++V LE++++E +P ++ W +
Sbjct: 295 CPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRD--WWQ 352
Query: 356 AIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGR- 414
I + LK + K + P +I A + T DVG+
Sbjct: 353 QIEQWRARQCLKYDTHSEK-------IKPQAVIETLWRLTKGDAYV-------TSDVGQH 398
Query: 415 ---AVLVQT--EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
A L +PR +++G GTMG GL + +A PE VV V GD
Sbjct: 399 QMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGD 448
>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 125 bits (315), Expect = 6e-31
Identities = 123/472 (26%), Positives = 204/472 (43%), Gaps = 51/472 (10%)
Query: 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYG 71
++ G + +SL G ++FG G V + + L G+ + +EQ+A + A Y
Sbjct: 3 KLSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYA 62
Query: 72 YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV 131
TGK G +L SGPG + + G++ ++ P+V++SG G FQE D +
Sbjct: 63 RSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIGTDAFQECDMLGIS 122
Query: 132 KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEA 191
+P K + K+ ++P + + A +GRPG +D+P D+ V+ A K E
Sbjct: 123 RPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDM------VNPANKFTYEY 176
Query: 192 ESAKETVTQGGIVNS---DIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ V I KA+ L AKKP++ G G A +L + + +P
Sbjct: 177 PEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLP 236
Query: 249 FLPTPMGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARL-----NWLLHFGE 296
+ MG G P T + T + A+ + D+ L +G R N L
Sbjct: 237 VTSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRFDDRTTNNL----- 291
Query: 297 PPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVE 355
K+ + K + +D+ I P ++ +VG AK VLE +++E L K+ +
Sbjct: 292 -AKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLEEEN--LAKSQTDLT 348
Query: 356 AIWKKTKDNVLK--MEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVG 413
A W++ + K +E DV+ P +++ AI + + + S DVG
Sbjct: 349 AWWQQINEWKAKKCLEFDRTSDVI-----KPQQVVE-AIYRLTNGDAYVAS------DVG 396
Query: 414 RAVLVQT------EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
+ + +PR +++G GTMG GL I A PE VV V GD
Sbjct: 397 QHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGD 448
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 118 bits (299), Expect = 9e-29
Identities = 77/280 (27%), Positives = 117/280 (41%), Gaps = 23/280 (8%)
Query: 21 AKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
+L G +F V G + V +L + +R I E A A AYG LTG+
Sbjct: 15 VDALRANGVERVFCVPGESYLAVLDALHDET---DIRVIVCRQEGGAAMMAEAYGKLTGR 71
Query: 77 PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK 136
PGI GPG + G+ ++ P+++ G + R FQE+D P +K
Sbjct: 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFREREAFQEIDYRRMFGPMAK 131
Query: 137 FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKE 196
+ + D +P+ V++ A SGRPG L LP DVL +T V +A
Sbjct: 132 WVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPY--------- 182
Query: 197 TVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGK 256
+D+ + LL A++PL++ G A +L+ E G+P +
Sbjct: 183 RRVAAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQ 242
Query: 257 GLLPDTHPLAA-----TAARSLA--IGQCDVALVVGARLN 289
L + HP A +LA I + D+ L VG RL
Sbjct: 243 DLFDNRHPNYAGDLGLGINPALAARIREADLVLAVGTRLG 282
Score = 41.4 bits (98), Expect = 8e-04
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 428 AGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
A T G+MG GL IAA + PER VVA GD F
Sbjct: 411 APTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCF 445
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 118 bits (298), Expect = 9e-29
Identities = 113/465 (24%), Positives = 201/465 (43%), Gaps = 57/465 (12%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILL 81
+ L G ++G+ G + L + + V+++ +E+ A AAS +TGKP +
Sbjct: 10 RVLEDNGIQRIYGIPGDSIDPLVDAIRKSKVKYVQVRHEEGAALAASVEAKITGKPSACM 69
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
SGPG +H L GL + ++ P++ ++G + G FQE V K F AV
Sbjct: 70 GTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMIGHDYFQE---VNLTKLFDDVAVFN 126
Query: 142 KDITEVPKCVAQVLERAVS---GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
+ + P+ ++ RA+ + G +++LP D+L ++ E + +K T
Sbjct: 127 QILIN-PENAEYIIRRAIREAISKRGVAHINLPVDILRKS----------SEYKGSKNTE 175
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE-LKKLVESTGIPFLPTPMGKG 257
+ D +A L+KE++KP+++ G G R G+ + + E G P + T GKG
Sbjct: 176 VGKVKYSIDFSRAKELIKESEKPVLLIGGG---TRGLGKEINRFAEKIGAPIIYTLNGKG 232
Query: 258 LLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
+LPD P L T A+ + D+ +++G ++ +K K + VD
Sbjct: 233 ILPDLDPKVMGGIGLLGTKPSIEAMDKADLLIMLGTSFPYVNFL------NKSAKVIQVD 286
Query: 311 VCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCL---GKNHPWVEAIWKKTKDNVL 366
+ I R L + L + +E K + F GK W+++I K+
Sbjct: 287 IDNSNIGKRLDVDLSYPIPVAEFLNIDIEE-KSDKFYEELKGKKEDWLDSISKQENSLDK 345
Query: 367 KMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRL 426
M+ Q ++ + +DA+ I+ G TM R E
Sbjct: 346 PMKPQR------VAYIVSQKCKKDAV--------IVTDTGNVTMWTARHFRASGEQTFIF 391
Query: 427 DAGTW-GTMGVGLGYCIAAAIAC-PERLVVAVEGDSGFGFSAVEV 469
A W G+MG+G+ + A+ A +R V++ GD GF + +E+
Sbjct: 392 SA--WLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMEL 434
>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate name
[Energy metabolism, Aerobic].
Length = 575
Score = 112 bits (282), Expect = 2e-26
Identities = 114/458 (24%), Positives = 195/458 (42%), Gaps = 43/458 (9%)
Query: 22 KSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
K L +G H++G+ G S + A + + +I +E+ AA+A LTGK G+
Sbjct: 7 KVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGV 66
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAV 139
+GPG H L GL + + P++ + G FQE+++ + +
Sbjct: 67 CFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNR 126
Query: 140 KAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVT 199
A +P + + + RA + G + +P D Q I + + + +T
Sbjct: 127 TAMTAESLPHVIDEAIRRAYA-HNGVAVVTIPVDFGWQEIP----DNDYYASSVSYQTPL 181
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
+ +AV LK A++P+I +G GA +A EL+ L E IP + T + KG++
Sbjct: 182 LPAPDVEAVTRAVQTLKAAERPVIYYGIGA--RKAGEELEALSEKLKIPLISTGLAKGII 239
Query: 260 PDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK-FVLVDV 311
D +P A + A+ Q D+ L VG F E K K+ K F+ +D+
Sbjct: 240 EDRYPAYLGSAYRVAQKPANEALFQADLVLFVGNNYP----FAEVSKAFKNTKYFIQIDI 295
Query: 312 CKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEV 370
++ R + ++ DAKK L I + EP ++ PW W+ NV
Sbjct: 296 DPAKLGKRHHTDIAVLADAKKALAAILA--QVEP---RESTPW----WQANVANVKNWRA 346
Query: 371 QLAKDVVPFNFMT--PMRI--IRDAILGVGSPAPIL-VSEGANTMDVGRAVLVQTEPRCR 425
LA T P++ + AI + I + G ++ R ++ P+ +
Sbjct: 347 YLAS----LEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNR--HLKMTPKNK 400
Query: 426 -LDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+ + + TMGVG+ IAA + P+R V + GD F
Sbjct: 401 WITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAF 438
>gnl|CDD|226470 COG3961, COG3961, Pyruvate decarboxylase and related thiamine
pyrophosphate-requiring enzymes [Carbohydrate transport
and metabolism / Coenzyme metabolism / General function
prediction only].
Length = 557
Score = 100 bits (251), Expect = 1e-22
Identities = 81/290 (27%), Positives = 121/290 (41%), Gaps = 33/290 (11%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAVQL-GVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
L+ G +FGV G SL ++ + G+R++ NE +A YAA Y L G
Sbjct: 11 FDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGI-SA 69
Query: 80 LLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD----------FGRGDFQELDQVE 129
L+T G G + L G++ P+V I G G GDF+
Sbjct: 70 LVTTFGVGELSALNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFK--VFHR 127
Query: 130 AVKPFSKFAVKAKDITEVPKCVAQVLERAV-SGRPGGCYLDLPTDVLHQTISVSEAEKLL 188
K + DI P+ + +V+ A+ RP Y+ LP DV I L
Sbjct: 128 MSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPV--YIGLPADVADLPIEAPLTPLDL 185
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
+ S E ++ ID L+ +AKKP+I+ + E ELKKL+ +TG P
Sbjct: 186 QLKTSDPE------ALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFP 239
Query: 249 FLPTPMGKGLLPDTHP---------LAATAARSLAIGQCDVALVVGARLN 289
PMGKG++ ++HP L+ R A+ D+ L +G L
Sbjct: 240 VATLPMGKGVIDESHPNYLGVYNGKLSEPEVRE-AVESADLILTIGVLLT 288
Score = 33.5 bits (77), Expect = 0.24
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 431 WGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
WG++G L + AA+A P+R V+ GD + E+
Sbjct: 410 WGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEI 448
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 96.2 bits (240), Expect = 4e-21
Identities = 101/446 (22%), Positives = 176/446 (39%), Gaps = 75/446 (16%)
Query: 67 ASAYGY--LTGKPGILLTVSGPGCVH---GLAGLSNGMINTW----PIVMISGSC---DQ 114
+ A+GY +TGKP ++ VH G A G+ N P+++ +G ++
Sbjct: 64 SMAHGYALVTGKPQAVM-------VHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEE 116
Query: 115 KDFG-RGDF----QE-LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168
+ G R QE DQ V+ + K+ + + ++ + VA+ ++ A+S G YL
Sbjct: 117 GELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYL 176
Query: 169 DLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKG 228
LP +VL + + +A + DI +A +L A++P+I+ +
Sbjct: 177 TLPREVLAEEVPEVKA------DAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRA 230
Query: 229 AAYARAEGELKKLVESTGIP---FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVG 285
A L++L E IP + + P HPL + + D+ LVV
Sbjct: 231 GRTAEGFASLRRLAEELAIPVVEYAGEVVN---YPSDHPLHLGPDPRADLAEADLVLVVD 287
Query: 286 ARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELR--KPHLGLVGDAKKVLEMINKEIKDE 343
+ + W+ P ++ ++ + VD K I L L + D L+ + + +K
Sbjct: 288 SDVPWIPKKIRPDADARVIQ-IDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSL 346
Query: 344 PFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPI-- 401
+ A ++ L++ + AK R I + PI
Sbjct: 347 ASAERRRARRRRAAVRE-----LRIRQEAAK--------------RAEIERLKDRGPITP 387
Query: 402 --LVSEGANTMDVGRAVLV---QTEPR-CRLD-AGTWGTMGV--GLGYCIAAAI----AC 448
L D +V PR RL+ G++ G GLG+ + AA+ A
Sbjct: 388 AYLSYCLGEVAD-EYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLAT 446
Query: 449 PERLVVAVEGDSGFGFSAVEVEVWLS 474
P+RLV+A GD F F E W++
Sbjct: 447 PDRLVIATVGDGSFIFGVPEAAHWVA 472
>gnl|CDD|181344 PRK08273, PRK08273, thiamine pyrophosphate protein; Provisional.
Length = 597
Score = 93.4 bits (233), Expect = 3e-20
Identities = 115/450 (25%), Positives = 176/450 (39%), Gaps = 79/450 (17%)
Query: 45 NRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWP 104
RA F+ +E+ A + A A+ TG+ G+ L SGPG +H L GL + ++ P
Sbjct: 37 GRA-DDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVP 95
Query: 105 IVMISGSCDQKDFGRGDF-QELDQVEAVKPF-SKFAVKAKDITEVPKCVAQVLERAVS-- 160
+V I G + G G + QE+D K F VP+ + +++RAV
Sbjct: 96 VVAIVGQQARAALG-GHYQQEVDLQSLFKDVAGAFVQMVT----VPEQLRHLVDRAVRTA 150
Query: 161 -GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV--NSDIDKAVSLLKE 217
+ LP DV Q + S T+ +V + D+ +A +L
Sbjct: 151 LAERTVTAVILPNDV--QELEYEPPPHAHGTVHSGV-GYTRPRVVPYDEDLRRAAEVLNA 207
Query: 218 AKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LAATAA 270
+K I+ G GA A E+ + E G +GK LPD P L T
Sbjct: 208 GRKVAILVGAGALGATD--EVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIGLLGTKP 265
Query: 271 RSLAIGQCDVALVVGARL---NWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKP-HLGLV 326
+ +CD L+VG+ +L G + V +D+ + LR P + LV
Sbjct: 266 SYELMRECDTLLMVGSSFPYSEFLPKEG-------QARGVQIDIDGRMLGLRYPMEVNLV 318
Query: 327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTP 384
GDA + L + ++ + + W E I W L+ + D P N P
Sbjct: 319 GDAAETLRALLPLLERKK-----DRSWRERIEKWVARWWETLEARAMVPAD--PVN---P 368
Query: 385 MRIIR--------DAILGVGSPAPILVSEGANTMDVG-------RAVLVQTEPRCRLDAG 429
R+ +AIL T D G R + ++ L +G
Sbjct: 369 QRVFWELSPRLPDNAIL---------------TADSGSCANWYARDLRMRRGMMASL-SG 412
Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
T TMG + Y IAA A P+R V+A+ GD
Sbjct: 413 TLATMGPAVPYAIAAKFAHPDRPVIALVGD 442
>gnl|CDD|132922 cd07039, TPP_PYR_POX, Pyrimidine (PYR) binding domain of POX.
Thiamine pyrophosphate (TPP family), pyrimidine (PYR)
binding domain of pyruvate oxidase (POX) subfamily. The
PYR domain is found in many key metabolic enzymes which
use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Most TPP-dependent enzymes have the PYR and
PP domains on the same subunit although these domains
can be alternatively arranged in the primary structure.
TPP-dependent enzymes are multisubunit proteins, the
smallest catalytic unit being a dimer-of-active sites.
Lactobacillus plantarum POX is a homotetramer
(dimer-of-homodimers), having two active sites per
homodimer lying between PYR and PP domains of different
subunits. POX decarboxylates pyruvate, producing
hydrogen peroxide and the energy-storage metabolite
acetylphosphate.
Length = 164
Score = 84.9 bits (211), Expect = 2e-19
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 21 AKSLSLFGATHMFGVVGIPVTSLANRAV--QLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
++L +G ++G+ G + L + A+ + + FI +E++A +AASA LTGK G
Sbjct: 7 VETLENWGVKRVYGIPGDSINGLMD-ALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLG 65
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
+ L SGPG +H L GL + + P++ I+G + G FQE+D + K + +
Sbjct: 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYN 125
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ 177
++P+ + + + A++ R G L LP DV
Sbjct: 126 ETVTSPEQLPELLDRAIRTAIAKR-GVAVLILPGDVQDA 163
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 87.4 bits (217), Expect = 3e-18
Identities = 114/500 (22%), Positives = 194/500 (38%), Gaps = 78/500 (15%)
Query: 13 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYG 71
++ L A L G FGV+ I + + + G +RF+ E A A A+
Sbjct: 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHA 61
Query: 72 YLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQEL-DQV 128
++G G+ LT +G G + L + P++ I+G + D G E DQ+
Sbjct: 62 RVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQL 121
Query: 129 EAVKPFSKFAVKAKDITEVPKCVAQVLERAVS---GRPGG-CYLDLPTDVLHQTISVSEA 184
++ SK A + + +A + AV P G +++P D+ I + +
Sbjct: 122 TMLRAVSKAAFR---VRSAETALA-TIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDD 177
Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES 244
+ A + + + + L A++PL+ G GA +A A E+K+LV+
Sbjct: 178 LAPVHVAVPEPDA--------AAVAELAERLAAARRPLLWLGGGARHAGA--EVKRLVD- 226
Query: 245 TGIPFLPTPMGKGLLPDTHPLA------ATAARSLAIGQCDVALVVGARL------NWLL 292
G + + G+G++P+ HP + + A +L CD+ LVVG+RL + L
Sbjct: 227 LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVEAL-YKTCDLLLVVGSRLRGNETLKYSL 285
Query: 293 HFGEPPKWSKDVKFVLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNH 351
P + VD P L + GDA +VL + ++
Sbjct: 286 ALPRP--------LIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEG--------R 329
Query: 352 PWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMD 411
V+ + L+ + A + + P + DA+ V D
Sbjct: 330 LSVDPAF----AADLRAAREAAVADL-RKGLGPYAKLVDALRAALPRDGNWVR------D 378
Query: 412 V-------GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGF 464
V G +L EPR + A G +G GL I AA+A P R V + GD G
Sbjct: 379 VTISNSTWGNRLLPIFEPRANVHA-LGGGIGQGLAMAIGAALAGPGRKTVGLVGDGGLML 437
Query: 465 ------SAVEVEVWLSCIIM 478
+AV+ + ++M
Sbjct: 438 NLGELATAVQENANMVIVLM 457
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 85.9 bits (213), Expect = 8e-18
Identities = 83/319 (26%), Positives = 129/319 (40%), Gaps = 58/319 (18%)
Query: 58 HNEQSAGYAASAYGYLTGKPGILLTVS--GPGCVHGLAGLSNGMINTWPIVMISGSCDQK 115
HNEQ +AA AY + I S GPG + + + +N P++++ G
Sbjct: 63 HNEQGMAHAAIAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDV--- 119
Query: 116 DFG-RGDFQELDQVE-----------AVKPFSKFAVKAKDITEVPKCVAQVLERA--VSG 161
F R L Q+E +P S++ D P+ + L RA V
Sbjct: 120 -FATRQPDPVLQQLEQFGDGTITTNDCFRPVSRYF----DRITRPEQLMSALPRAMRVMT 174
Query: 162 RPGGC---YLDLPTDVLHQTISVSE---AEKLLKEAESAKETVTQGGIVNSDIDKAVSLL 215
P C L L DV + E +++ + + ++ A +L+
Sbjct: 175 DPADCGPVTLALCQDVQAEAYDYPESFFEKRVWRIRRPPPDER--------ELADAAALI 226
Query: 216 KEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------AAT 268
K AKKPLIV G G Y+ A L+ E+ GIP + T GK L HPL T
Sbjct: 227 KSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVGVTGT 286
Query: 269 AARSLAIGQCDVALVVGARL------NWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPH 322
A + A + D+ + +G RL + L F P VKF+ ++V + +
Sbjct: 287 LAANRAAEEADLVIGIGTRLQDFTTGSKAL-FKNP-----GVKFLNLNVQPFDA-YKHDA 339
Query: 323 LGLVGDAKKVLEMINKEIK 341
L LV DA+ LE +++ +
Sbjct: 340 LPLVADARAGLEALSEALG 358
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family,
TPP-binding module; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. These enzymes include, among others, the E1
components of the pyruvate, the acetoin and the branched
chain alpha-keto acid dehydrogenase complexes.
Length = 168
Score = 61.1 bits (149), Expect = 4e-11
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 388 IRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIA 447
+ A+ I+V++ N+ L R L + +G MG GL I AA+A
Sbjct: 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALA 61
Query: 448 CPERLVVAVEGDSGFGFSAVEVE 470
P+R VV + GD GF + E+
Sbjct: 62 APDRPVVCIAGDGGFMMTGQELA 84
>gnl|CDD|132434 TIGR03393, indolpyr_decarb, indolepyruvate decarboxylase, Erwinia
family. A family of closely related, thiamine
pyrophosphate-dependent enzymes includes indolepyruvate
decarboxylase (EC 4.1.1.74), phenylpyruvate
decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC
4.1.1.1), branched-chain alpha-ketoacid decarboxylase,
etc.. Members of this group of homologs may overlap in
specificity. Within the larger family, this model
represents a clade of bacterial indolepyruvate
decarboxylases, part of a pathway for biosynthesis of
the plant hormone indole-3-acetic acid. Typically, these
species interact with plants, as pathogens or as
beneficial, root-associated bacteria [Central
intermediary metabolism, Other].
Length = 539
Score = 60.7 bits (147), Expect = 7e-10
Identities = 102/483 (21%), Positives = 166/483 (34%), Gaps = 109/483 (22%)
Query: 24 LSLFGATHMFGVVGIPVTSLANRAV-QLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82
L+ G H+FGV G + + + ++ NE +A YAA Y G LLT
Sbjct: 11 LTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGA-AALLT 69
Query: 83 VSGPGCVHGLAGLSNGMINTWPIVMI----------SGSCDQKDFGRGDFQELDQVEAVK 132
G G + + G++ P++ I G G GDF+ ++ A
Sbjct: 70 TFGVGELSAINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEV 129
Query: 133 PFSKFAVKAKDIT-EVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEA 191
++ + ++ T E+ + + L RPG YL LP DV + ++ + +
Sbjct: 130 TVAQAVLTEQNATAEIDRVITTALRER---RPG--YLMLPVDVAAKAVTPPVNPLVTHKP 184
Query: 192 ESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251
A + + D A + L AK+ ++ A + L+K V+ +P
Sbjct: 185 AHADSAL------RAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHAT 238
Query: 252 TPMGKGLLPDTHP--------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKD 303
MGKG+L + A+T A AI D + VG R + G
Sbjct: 239 LLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAG-------- 290
Query: 304 VKFVLVDVCKEEIELRKPHLGLVG----------DAKKVLEMINKEIKDE-------PFC 346
F ++ I++ +PH VG DA + L + + PF
Sbjct: 291 --FTHQLTPEQTIDV-QPHAARVGNVWFTGIPMNDAIETLVELCEHAGLMWSSSGAIPFP 347
Query: 347 LGKNHPWV---EAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILV 403
E W+ + +R P I++
Sbjct: 348 QPDESRSALSQENFWQTLQ-----------------------TFLR--------PGDIIL 376
Query: 404 SEGANTMDVGRAVLVQTEPRCRLDAGT-------WGTMGVGLGYCIAAAIACPERLVVAV 456
++ T G A L RL A WG++G L A ACP R V+ +
Sbjct: 377 AD-QGTSAFGAADL-------RLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILL 428
Query: 457 EGD 459
GD
Sbjct: 429 IGD 431
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal
TPP binding domain.
Length = 151
Score = 56.4 bits (137), Expect = 1e-09
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 406 GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
G + M R PR L +G GTMG GL I A +A P+R VVA+ GD GF +
Sbjct: 3 GCHQMWAARY-YRFRPPRRYLTSGGLGTMGYGLPAAIGAKLARPDRPVVAIAGDGGFQMN 61
>gnl|CDD|181661 PRK09124, PRK09124, pyruvate dehydrogenase; Provisional.
Length = 574
Score = 60.0 bits (146), Expect = 1e-09
Identities = 114/481 (23%), Positives = 185/481 (38%), Gaps = 85/481 (17%)
Query: 18 TLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLG-VRFIAFHNEQSAGYAASAYGYLTGK 76
AK+L G ++GV G + L++ ++G + ++ +E+ A +AA A LTG+
Sbjct: 7 DYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGE 66
Query: 77 PGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK 136
+ GPG +H + GL + N P++ I+ + G G FQE E + S
Sbjct: 67 LAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSH 126
Query: 137 FAVKAKDITEVPKCVAQVLERAVS---GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAES 193
+ + ++P +VL A+ G + LP DV + E+
Sbjct: 127 YCELVSNPEQLP----RVLAIAMRKAILNRGVAVVVLPGDVALKPAP----ERATPHWYH 178
Query: 194 AKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
A + V ++ K +LL + ++ G G A A EL L E+ P +
Sbjct: 179 APQPVVTPA--EEELRKLAALLNGSSNITLLCGSGCAGAHD--ELVALAETLKAPIVHAL 234
Query: 254 MGKGLLPDTHP-------LAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKF 306
GK + +P L ++ A+ CD L++G F + D K
Sbjct: 235 RGKEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLMLGTD------FPYRQFYPTDAKI 288
Query: 307 VLVDVCKEEIELRKP-HLGLVGDAKKVLEMINKEIK---DEPFCLGKNHPWVEAIWKKTK 362
+ +D+ + R P LGLVGD K L + ++ D F
Sbjct: 289 IQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLEEKTDRKFL---------------- 332
Query: 363 DNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA--PI-------LVSEGAN----- 408
D L+ + K + D L V S PI +SE A
Sbjct: 333 DKALEHYRKARKGL-------------DD-LAVPSDGGKPIHPQYLARQISEFAADDAIF 378
Query: 409 TMDVGRAVL-----VQTEPRCRLDAGTW--GTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
T DVG + ++ + RL G++ G+M + + A A P R VVA+ GD G
Sbjct: 379 TCDVGTPTVWAARYLKMNGKRRL-LGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGG 437
Query: 462 F 462
F
Sbjct: 438 F 438
>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate
synthase (ALS) subfamily, TPP-binding module; composed
of proteins similar to Klebsiella pneumoniae ALS, a
catabolic enzyme required for butanediol fermentation.
ALS catalyzes the conversion of 2 molecules of pyruvate
to acetolactate and carbon dioxide. ALS does not contain
FAD, and requires TPP and a divalent metal cation for
activity.
Length = 177
Score = 55.8 bits (135), Expect = 3e-09
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 384 PMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT-EPR-CRLDAGTWGTMGVGLGYC 441
P RI+ D +G +L+ GA+ + + R +T P C + G TMGV L
Sbjct: 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMAR--YYRTYAPNTCLISNG-LATMGVALPGA 57
Query: 442 IAAAIACPERLVVAVEGDSGFGFSAVEVE 470
I A + P+R VVAV GD GF ++ E+E
Sbjct: 58 IGAKLVYPDRKVVAVSGDGGFMMNSQELE 86
>gnl|CDD|180614 PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.
Length = 578
Score = 56.1 bits (136), Expect = 2e-08
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 12/211 (5%)
Query: 28 GATHMFGVVGI---PVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84
G ++G+VG P+ R G+ ++ +E++A +AA+A LTGK +
Sbjct: 17 GVKRIYGIVGDSLNPIVDAVRRTG--GIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSC 74
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDI 144
GPG +H + GL + + P++ I+ G G FQE S +
Sbjct: 75 GPGNLHLINGLYDAHRSGAPVLAIASHIPSAQIGSGFFQETHPDRLFVECSGYCEMVSSA 134
Query: 145 TEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIV 204
+ P+ + ++ AV G + LP D+ + A ++ + TV
Sbjct: 135 EQAPRVLHSAIQHAV-AGGGVSVVTLPGDIADEPAPEGFAPSVI---SPRRPTVVPD--- 187
Query: 205 NSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+++ + EAKK + G G A AE
Sbjct: 188 PAEVRALADAINEAKKVTLFAGAGVRGAHAE 218
Score = 32.7 bits (75), Expect = 0.47
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 432 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFG 463
G+M L + I A +A P R V+++ GD G
Sbjct: 408 GSMANALPHAIGAQLADPGRQVISMSGDGGLS 439
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family,
Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding
module; composed of proteins similar to the large
catalytic subunit of AHAS. AHAS catalyzes the
condensation of two molecules of pyruvate to give the
acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the
precursor of the branched chain amino acids, valine and
leucine. AHAS also catalyzes the condensation of
pyruvate and 2-ketobutyrate to form
2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In
addition to requiring TPP and a divalent metal ion as
cofactors, AHAS requires FAD.
Length = 186
Score = 51.0 bits (123), Expect = 2e-07
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 420 TEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+PR L +G GTMG GL I A +A P++ V+ ++GD F
Sbjct: 38 KKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80
>gnl|CDD|132921 cd07038, TPP_PYR_PDC_IPDC_like, Pyrimidine (PYR) binding domain of
pyruvate decarboxylase (PDC), indolepyruvate
decarboxylase (IPDC) and related proteins. Thiamine
pyrophosphate (TPP family), pyrimidine (PYR) binding
domain of pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC) subfamily. The PYR
domain is found in many key metabolic enzymes which use
TPP (also known as thiamine diphosphate) as a cofactor.
TPP binds in the cleft formed by a PYR domain and a PP
domain. The PYR domain, binds the aminopyrimidine ring
of TPP, the PP domain binds the diphosphate residue. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this sub-family. Most TPP-dependent enzymes
have the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites, for many the active sites lie
between PP and PYR domains on different subunits. PDC
catalyzes the conversion of pyruvate to acetaldehyde and
CO2 in alcoholic fermentation. IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway in plants and
various plant-associated bacteria, it catalyzes the
decarboxylation of IPA to IAA. Also belonging to this
group is Mycobacterium tuberculosis alpha-keto acid
decarboxylase (MtKDC) which participates in amino acid
degradation via the Ehrlich pathway, and Lactococcus
lactis branched-chain keto acid decarboxylase (KdcA) an
enzyme identified as being involved in cheese ripening,
which exhibits a very broad substrate range in the
decarboxylation and carboligation reactions.
Length = 162
Score = 50.2 bits (121), Expect = 2e-07
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 33/169 (19%)
Query: 24 LSLFGATHMFGVVGIPVTSLANRAVQ-LGVRFIAFHNEQSAGYAASAYGYLTGKPGILLT 82
L G H+FGV G L + + G+R++ NE +AGYAA Y + G G L+T
Sbjct: 7 LKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKG-LGALVT 65
Query: 83 VSGPG---CVHGLAG-----LSNGMINTWPIVMISGSCDQKD----------FGRGDFQE 124
G G ++G+AG + P+V I G+ K G GDF
Sbjct: 66 TYGVGELSALNGIAGAYAEHV--------PVVHIVGAPSTKAQASGLLLHHTLGDGDFDV 117
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPT 172
++ + + A + D + + +VL A+ RP Y+++P
Sbjct: 118 --FLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPV--YIEIPR 162
>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family,
Xsc-like subfamily, TPP-binding module; composed of
proteins similar to Alcaligenes defragrans
sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a
key role in the degradation of taurine, catalyzing the
desulfonation of 2-sulfoacetaldehyde into sulfite and
acetyl phosphate. This enzyme requires TPP and divalent
metal ions for activity.
Length = 196
Score = 50.6 bits (121), Expect = 2e-07
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 380 NFMTPMRIIRDAILGVGSPAPILVS-EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGL 438
N M P +++R+ L P +VS + N V + L +PR + ++G G L
Sbjct: 2 NPMHPRQVLRE--LEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYAL 59
Query: 439 GYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
I A A P+R VVA+ GD +G S +E+
Sbjct: 60 PAIIGAKAAAPDRPVVAIAGDGAWGMSMMEI 90
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 48.5 bits (116), Expect = 8e-07
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 5/146 (3%)
Query: 28 GATHMFGVVGIPVTSL--ANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSG 85
G H+FG G ++SL A R +E A AA+ Y G P +++ SG
Sbjct: 11 GVRHVFGYPGDEISSLLDALREGD-KRIIDTVIHELGAAGAAAGYARAGG-PPVVIVTSG 68
Query: 86 PGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDIT 145
G ++ + GL++ P+V + G+ + FQ + + + + + +
Sbjct: 69 TGLLNAINGLADAAAEHLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEANISSPSPA 128
Query: 146 EVPKCVAQVLERAVSGRPGGCYLDLP 171
E+P + + A + G + LP
Sbjct: 129 ELPAGIDHAIRTAYAS-QGPVVVRLP 153
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate
oxidase (POX) subfamily, TPP-binding module; composed of
proteins similar to Lactobacillus plantarum POX, which
plays a key role in controlling acetate production under
aerobic conditions. POX decarboxylates pyruvate,
producing hydrogen peroxide and the energy-storage
metabolite acetylphosphate. It requires FAD in addition
to TPP and a divalent cation as cofactors.
Length = 178
Score = 46.0 bits (110), Expect = 9e-06
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 429 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
G TMG GL IAA +A P+R V+A+ GD GF
Sbjct: 48 GLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGF 81
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
Length = 530
Score = 46.5 bits (111), Expect = 2e-05
Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 22/230 (9%)
Query: 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD 126
A Y TG + S G + + L N P+V+ +G + F L
Sbjct: 64 ADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILPFEPF--LA 121
Query: 127 QVEAV---KPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
V+A KP+ K++++ +VP +A+ A+ G ++ +P D Q
Sbjct: 122 AVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWDQ-----P 176
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
AE L A+ + + + + L A++P +V G A A + +L E
Sbjct: 177 AEPLP-----ARTVSSAVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAE 231
Query: 244 STGIPFLPTPM-GKGLLPDTHPL------AATAARSLAIGQCDVALVVGA 286
P PM G+ P+ HPL A+ S + D+ LV+GA
Sbjct: 232 RHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISALLDGHDLVLVIGA 281
>gnl|CDD|215311 PLN02573, PLN02573, pyruvate decarboxylase.
Length = 578
Score = 46.2 bits (110), Expect = 3e-05
Identities = 69/269 (25%), Positives = 109/269 (40%), Gaps = 46/269 (17%)
Query: 21 AKSLSLFGATHMFGVVG-IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGI 79
A+ L G T +F V G +T L + + G+ I NE +AGYAA Y G
Sbjct: 23 ARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGAC 82
Query: 80 LLTVSGPGCVHGLAGLSNGMINTW----PIVMISGSCDQKDFGRG----------DF-QE 124
++T V GL+ L N + + P++ I G + D+G DF QE
Sbjct: 83 VVTF----TVGGLSVL-NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQE 137
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVS-----GRPG----GCYLDLPTDVL 175
L + V + +D E+ ++ A+S +P C L +
Sbjct: 138 LRCFQTVTCYQAVINNLEDAHEL-------IDTAISTALKESKPVYISVSCNL---AAIP 187
Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
H T S L S K ++ + ++ A L +A KP++V G A+A
Sbjct: 188 HPTFSREPVPFFLTPRLSNKMSL------EAAVEAAAEFLNKAVKPVLVGGPKLRVAKAC 241
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHP 264
+L +++G P P KGL+P+ HP
Sbjct: 242 KAFVELADASGYPVAVMPSAKGLVPEHHP 270
>gnl|CDD|139002 PRK12474, PRK12474, hypothetical protein; Provisional.
Length = 518
Score = 44.9 bits (106), Expect = 7e-05
Identities = 34/109 (31%), Positives = 47/109 (43%)
Query: 66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQEL 125
AA YG + GKP + L GPG +GLA L N PIV I G +
Sbjct: 58 AADGYGRIAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTS 117
Query: 126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
D +P S++ ++ V VA+ ++ A S G L +P DV
Sbjct: 118 DIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166
Score = 36.4 bits (84), Expect = 0.030
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGDSG 461
T G++G GL AA+A P+R VV +GD G
Sbjct: 387 TGGSIGQGLPLAAGAAVAAPDRKVVCPQGDGG 418
>gnl|CDD|132435 TIGR03394, indol_phenyl_DC, indolepyruvate/phenylpyruvate
decarboxylase, Azospirillum family. A family of closely
related, thiamine pyrophosphate-dependent enzymes
includes indolepyruvate decarboxylase (EC 4.1.1.74),
phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate
decarboxylase (EC 4.1.1.1), branched-chain
alpha-ketoacid decarboxylase, etc.. Members of this
group of homologs may overlap in specificity. This model
represents a clade that includes a Azospirillum
brasilense member active as both phenylpyruvate
decarboxylase and indolepyruvate decarboxylase.
Length = 535
Score = 44.5 bits (105), Expect = 8e-05
Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 24/252 (9%)
Query: 28 GATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVS 84
GA MFG+ G +P + L +E + G+AA A G G+
Sbjct: 14 GAQEMFGIPGDFALPFFKVIEETGIL--PLHTLSHEPAVGFAADAAARYRGTLGVAAVTY 71
Query: 85 GPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRG-----DFQELD-QVEAVKPFSKFA 138
G G + + ++ P+V+ISG+ + G + LD Q + K +
Sbjct: 72 GAGAFNMVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQ 131
Query: 139 VKAKDITEVPKCVAQVLERAVS-GRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKET 197
D P +A+VL A RP YL++P D+++ +E E + +
Sbjct: 132 AVLDDPATAPAEIARVLGSARELSRP--VYLEIPRDMVN-----AEVEPVPDDPAWP--- 181
Query: 198 VTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 257
+++ D+ ++ ++ A P+++ E ++ +L + G+P + T MG+G
Sbjct: 182 -VDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRG 240
Query: 258 LLPDTH-PLAAT 268
LL D P T
Sbjct: 241 LLADAPTPPLGT 252
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 39.5 bits (93), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 432 GTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFS 465
G +G GL + AA+A P+R VVA+ GD F ++
Sbjct: 49 GGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYT 82
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family,
PDC_IPDC subfamily, TPP-binding module; composed of
proteins similar to pyruvate decarboxylase (PDC) and
indolepyruvate decarboxylase (IPDC). PDC, a key enzyme
in alcoholic fermentation, catalyzes the conversion of
pyruvate to acetaldehyde and CO2. It is able to utilize
other 2-oxo acids as substrates. In plants and various
plant-associated bacteria, IPDC plays a role in the
indole-3-pyruvic acid (IPA) pathway, a
tryptophan-dependent biosynthetic route to
indole-3-acetaldehyde (IAA). IPDC catalyzes the
decarboxylation of IPA to IAA. Both PDC and IPDC depend
on TPP and Mg2+ as cofactors.
Length = 183
Score = 36.7 bits (86), Expect = 0.010
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 429 GTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEV 469
WG++G + + AA+A P+R V+ + GD F + E+
Sbjct: 47 PLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQEL 87
>gnl|CDD|232855 TIGR00173, menD,
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylic-acid synthase. MenD was thought until
recently to act as SHCHC synthase, but has recently been
shown to act instead as SEPHCHC synthase. Conversion of
SEPHCHC into SHCHC and pyruvate may occur spontaneously
but is catalyzed efficiently, at least in some
organisms, by MenH (see TIGR03695). 2-oxoglutarate
decarboxylase/SHCHC synthase (menD) is a thiamine
pyrophosphate enzyme involved in menaquinone
biosynthesis [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 430
Score = 37.2 bits (87), Expect = 0.018
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 151 VAQVLERAVSGRPGGCYLDLP-TDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSD-- 207
V + + +A PG ++++P + L+ + L S TV+ G V
Sbjct: 143 VDRAVAQAQGAPPGPVHINVPFREPLY---PDPLLQPLQPWLRSGVPTVSTGPPVLDPES 199
Query: 208 IDKAVSLLKEAKKPLIVFGK--GAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
+D L++AK+ LI+ G GA A A L L E+ G P L P+ GL HPL
Sbjct: 200 LDDLWDRLRQAKRGLIIAGPLAGAEDAEA---LAALAEALGWPLLADPLS-GLRGGPHPL 255
Query: 266 AATAARS-LAIGQCDVALVVGARLNWLLHFGEPP------KW--SKDVKFVLVD 310
LA + L + ++ FG PP +W + ++ +VD
Sbjct: 256 VIDHYDLLLANAELREELQP----DLVIRFGGPPVSKRLRQWLARQPAEYWVVD 305
>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 35.2 bits (82), Expect = 0.070
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 430 TWGTMGVGLGYCIAAAIACPERLVVAVEGD 459
T G +G GL AA+ACP+R V+A++GD
Sbjct: 383 TGGAIGQGLPLATGAAVACPDRKVLALQGD 412
Score = 31.7 bits (73), Expect = 0.95
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 66 AASAYGYLTGKPGILLTVSGPGCVHGLAGLSN------GMIN 101
AA Y + GKP L GPG +GLA L N ++N
Sbjct: 54 AADGYARMAGKPAATLLHLGPGLANGLANLHNARRARTPIVN 95
>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein. RpiR contains a SIS (Sugar
ISomerase) domain, which is found in many phosphosugar
isomerases and phosphosugar binding proteins. In E.
coli, rpiR negatively regulates the expression of rpiB
gene. Both rpiB and rpiA are ribose phosphate isomerases
that catalyze the reversible reactions of ribose
5-phosphate into ribulose 5-phosphate.
Length = 139
Score = 33.0 bits (76), Expect = 0.12
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 206 SDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL 265
++KAV LL +A++ + +FG G++ AE L + G P + LL D H
Sbjct: 1 EALEKAVDLLAKARR-IYIFGVGSSGLVAE-YLAYKLLRLGKPVV-------LLSDPHLQ 51
Query: 266 AATAARSLAIGQCDVALVV 284
+AA + DV + +
Sbjct: 52 LMSAAN---LTPGDVVIAI 67
>gnl|CDD|176449 cd00281, DAP_dppA, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 265
Score = 34.1 bits (78), Expect = 0.12
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 51 GVRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISG 110
+ FI +H A+ Y T I + H L L+ G P+VM++G
Sbjct: 97 ALLFIGYHARAGTAANVMAHSYTTEVSQIRINGQAIAEFH-LNALTAGYYGV-PVVMVAG 154
Query: 111 SCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRP 163
+ + +++ V K +F+VKA +V + + + E ++ P
Sbjct: 155 DAEVCKEAKAYDAQVETVVTKKGMGRFSVKAPSPQKVLRAIREGTEGSLQRLP 207
>gnl|CDD|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated.
Length = 687
Score = 34.0 bits (79), Expect = 0.17
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 214 LLKEAKKPLIVFGKGAAYARAEGE-----LKKLVESTGI 247
+LK AK+P+I+ G+G A ARA+G KL E G
Sbjct: 433 VLKAAKRPMIIVGQG-ALARADGAAVLALAAKLAEKVGA 470
>gnl|CDD|217100 pfam02552, CO_dh, CO dehydrogenase beta subunit/acetyl-CoA synthase
epsilon subunit. This family consists of Carbon
monoxide dehydrogenase I/II beta subunit EC:1.2.99.2 and
acetyl-CoA synthase epsilon subunit. Carbon monoxide
beta subunit catalyzes the reaction: CO + H2O + acceptor
<=> CO2 + reduced acceptor.
Length = 168
Score = 32.5 bits (74), Expect = 0.26
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 211 AVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP 264
A ++K+AK+PL++ G YA E K + + + T + L D P
Sbjct: 28 AAMMIKKAKRPLLIVGPQVLYAENEEAKVKKILEKDLKEVATALIIAGLYDYEP 81
>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family,
IOR-alpha subfamily, TPP-binding module; composed of
proteins similar to indolepyruvate ferredoxin
oxidoreductase (IOR) alpha subunit. IOR catalyzes the
oxidative decarboxylation of arylpyruvates, such as
indolepyruvate or phenylpyruvate, which are generated by
the transamination of aromatic amino acids, to the
corresponding aryl acetyl-CoA.
Length = 178
Score = 31.1 bits (71), Expect = 0.71
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
D+G L P +D T MG +G I A A ++ VVAV GDS F
Sbjct: 32 DIGCYTLGALPPLNAIDTCT--CMGASIGVAIGMAKASEDKKVVAVIGDSTF 81
>gnl|CDD|238964 cd02006, TPP_Gcl, Thiamine pyrophosphate (TPP) family, Gcl
subfamily, TPP-binding module; composed of proteins
similar to Escherichia coli glyoxylate carboligase
(Gcl). E. coli glyoxylate carboligase, plays a key role
in glyoxylate metabolism where it catalyzes the
condensation of two molecules of glyoxylate to give
tartronic semialdehyde and carbon dioxide. This enzyme
requires TPP, magnesium ion and FAD as cofactors.
Length = 202
Score = 31.1 bits (70), Expect = 0.90
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
+PR ++ G G +G + + A A P+R VVA+ GD F F E+ V
Sbjct: 46 KPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEELAV 96
>gnl|CDD|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second
domain of the Nad11/75-kDa subunit of the NADH-quinone
oxidoreductase/respiratory complex I/NADH
dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G
subunit of alphaproteobacteria NDH-1. The NADH-quinone
oxidoreductase is the first energy-transducting complex
in the respiratory chains of many prokaryotes and
eukaryotes. Mitochondrial complex I and its bacterial
counterpart, NDH-1, function as a redox pump that uses
the redox energy to translocate H+ ions across the
membrane, resulting in a significant contribution to
energy production. The nad11 gene codes for the largest
(75 kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Paracoccus denitrificans, this subunit is
encoded by the nqo3 gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The Nad11/Nqo3 subunit is made of two domains: the first
contains three binding sites for FeS clusters (the fer2
domain), the second domain (this CD), is of unknown
function or, as postulated, has lost an ancestral
formate dehydrogenase activity that became redundant
during the evolution of the complex I enzyme. Although
only vestigial sequence evidence remains of a
molybdopterin binding site, this protein domain belongs
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 375
Score = 30.7 bits (70), Expect = 1.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 215 LKEAKKPLIVFGKGAAYARAEGE-----LKKLVESTGI 247
LK+AKKP+I+ G G A AR +G + KL + G+
Sbjct: 215 LKDAKKPMIIVGSG-ALARKDGAAILAAVAKLAKKNGV 251
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 30.8 bits (69), Expect = 1.8
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 21/104 (20%)
Query: 313 KEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKT----------- 361
+EE EL + H D K+ LE I E +E F + ++E K
Sbjct: 243 EEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRNIAGGFSEFFS 302
Query: 362 KDNVLKMEVQLAK--------DVVPFNFMTPMRIIRDAILGVGS 397
K N K + ++ K + +I +D LG+G+
Sbjct: 303 KLNPFKKDEKIEKKEISKITFSGIGDKITDKEKIAKD--LGIGA 344
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 30.4 bits (69), Expect = 1.9
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 230 AYARAEGELKKLVESTGIPFLP-TPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282
AE EL L GI L +P+ GLL + +R+ + + L
Sbjct: 183 LERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQREL 236
>gnl|CDD|235721 PRK06163, PRK06163, hypothetical protein; Provisional.
Length = 202
Score = 30.2 bits (68), Expect = 2.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 432 GTMGVGLGYCIAAAIACPERLVVAVEGD 459
G+MG+ + A+A P+R V+A+EGD
Sbjct: 57 GSMGLAFPIALGVALAQPKRRVIALEGD 84
>gnl|CDD|202597 pfam03332, PMM, Eukaryotic phosphomannomutase. This enzyme
EC:5.4.2.8 is involved in the synthesis of the
GDP-mannose and dolichol-phosphate-mannose required for
a number of critical mannosyl transfer reactions.
Length = 219
Score = 30.0 bits (68), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 97 NGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKP 133
NGMIN P I +C Q++ R +F+E D+ ++
Sbjct: 96 NGMINVSP---IGRNCSQEE--RNEFEEYDKKHKIRQ 127
>gnl|CDD|129415 TIGR00315, cdhB, CO dehydrogenase/acetyl-CoA synthase complex,
epsilon subunit. Nomenclature follows the description
for Methanosarcina thermophila. The complex is also
found in Archaeoglobus fulgidus, not considered a
methanogen, but is otherwise generally associated with
methanogenesis [Energy metabolism, Chemoautotrophy].
Length = 162
Score = 29.5 bits (66), Expect = 2.5
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 214 LLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP 253
++K AK+PL++ G + + K +E +P + T
Sbjct: 23 MIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62
>gnl|CDD|239093 cd02410, archeal_CPSF_KH, The archaeal cleavage and polyadenylation
specificity factor (CPSF) contains an N-terminal K
homology RNA-binding domain (KH). The archeal CPSFs are
predicted to be metal-dependent RNases belonging to the
beta-CASP family, a subgroup enzymes within the
metallo-beta-lactamase fold. The KH motif is a
beta-alpha-alpha-beta-beta unit that folds into an
alpha-beta structure with a three stranded beta-sheet
interupted by two contiguous helices. In general, KH
domains are known to bind single-stranded RNA or DNA and
are found in a wide variety of proteins including
ribosomal proteins, transcription factors and
post-transcriptional modifiers of mRNA.
Length = 145
Score = 29.2 bits (66), Expect = 2.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 175 LHQTISVSEAEKLLKEAESAKETVTQ-----GGIVNSDIDKAV-SLLKEAKKPLIVFGKG 228
L + I + +LK E A + + + GI + D ++ EA+KP +V GKG
Sbjct: 35 LRKRIVIRPDPSVLKPPEEAIKIILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKG 94
Query: 229 AAYAR 233
+ R
Sbjct: 95 GSTLR 99
>gnl|CDD|163643 cd07400, MPP_YydB, Bacillus subtilis YydB and related proteins,
metallophosphatase domain. YydB (BSU40220) is an
uncharacterized Bacillus subtilis protein that belongs
to the following Bacillus subtilis gene cluster
yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 144
Score = 29.3 bits (66), Expect = 2.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 292 LHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLV-GD 328
LHFG K L+D EI+ P L ++ GD
Sbjct: 7 LHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGD 44
>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain
the SIS (Sugar ISomerase) domain and have both the
phosphoglucose isomerase (PGI) and the phosphomannose
isomerase (PMI) functions. These functions catalyze the
reversible reactions of glucose 6-phosphate to fructose
6-phosphate, and mannose 6-phosphate to fructose
6-phosphate, respectively at an equal rate. This protein
contains two SIS domains. This alignment is based on the
first SIS domain.
Length = 119
Score = 28.8 bits (65), Expect = 2.6
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 211 AVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMG 255
AV KE ++ G G+L ++ G+P + P G
Sbjct: 62 AVEQAKERGAKIVAITSG-------GKLLEMAREHGVPVIIIPKG 99
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 30.0 bits (69), Expect = 2.7
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 13/46 (28%)
Query: 178 TISVSEAEKLLKEAESAK------------ETVTQGGIVNSD-IDK 210
+ V EA K+L E E+AK E V Q GIV D IDK
Sbjct: 215 KLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDK 260
>gnl|CDD|239162 cd02761, MopB_FmdB-FwdB, The MopB_FmdB-FwdB CD contains the
molybdenum/tungsten formylmethanofuran dehydrogenases,
subunit B (FmdB/FwdB), and other related proteins.
Formylmethanofuran dehydrogenase catalyzes the first
step in methane formation from CO2 in methanogenic
archaea and some eubacteria. Members of this CD belong
to the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 415
Score = 30.0 bits (68), Expect = 3.3
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 37/165 (22%)
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE---- 235
++ LL+ A + V GI I + LK AK +I +G G +R
Sbjct: 199 LLAALRALLRGAGLVPDEVA--GIPAETILELAERLKNAKFGVIFWGLGLLPSRGAHRNI 256
Query: 236 -------GELKKLVESTGIPF--------------------LPTPMGKGLLPDTHPLAAT 268
L + + +P +G P +P T
Sbjct: 257 EAAIRLVKALNEYTKFALLPLRGHYNVRGFNQVLTWLTGYPFRVDFSRGY-PRYNPGEFT 315
Query: 269 AARSLAIGQCDVALVVGARLNWLLHF-GEPPKWSKDVKFVLVDVC 312
A LA G+ D L++ + HF K ++ +++D
Sbjct: 316 AVDLLAEGEADALLIIASDP--PAHFPQSAVKHLAEIPVIVIDPP 358
>gnl|CDD|226489 COG3981, COG3981, Predicted acetyltransferase [General function
prediction only].
Length = 174
Score = 29.3 bits (66), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 314 EEIELRKPHLGLVGDAKKVLEMINKEIKDEP 344
EE++LR+P L D LEM + + D
Sbjct: 2 EEMKLRRPTL---KDKDAFLEMKKEFLTDGS 29
>gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC. These proteins
are predicted to function as initial receptors in ABC
transport of metal ions in eubacteria and archaea. They
belong to the TroA superfamily of periplasmic metal
binding proteins that share a distinct fold and ligand
binding mechanism. A typical TroA protein is comprised
of two globular subdomains connected by a single helix
and can bind the metal ion in the cleft between these
domains.
Length = 195
Score = 29.2 bits (66), Expect = 3.8
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 192 ESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP 251
+ ++ G N +++K V+L KP +V ++ A +LK GIP +
Sbjct: 37 KEVRKKPKVGSYSNPNVEKIVAL-----KPDLVIVSSSSLAELLEKLKDA----GIPVVV 87
Query: 252 TP 253
P
Sbjct: 88 LP 89
>gnl|CDD|213987 cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase
domain of Histidinol phosphate phosphatase. HisPPase
catalyzes the eighth step of histidine biosynthesis, in
which L-histidinol phosphate undergoes
dephosphorylation to produce histidinol. HisPPase can
be classified into two types: the bifunctional HisPPase
found in proteobacteria that belongs to the DDDD
superfamily and the monofunctional Bacillus subtilis
type that is a member of the PHP family. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. The PHP
domain has four conserved sequence motifs and contains
an invariant histidine that is involved in metal ion
coordination. The PHP domain of HisPPase is
structurally homologous to other members of the PHP
family that have a distorted (beta/alpha)7 barrel fold
with a trinuclear metal site on the C-terminal side of
the barrel.
Length = 129
Score = 28.4 bits (64), Expect = 3.9
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 39 PVTSLANRAVQLGVRFIAF--HNEQSAGYAASAYGY---LTGKPGI 79
+ RA++LG+ IA HN A Y L PG+
Sbjct: 16 TPEEIVERAIELGLDGIAITDHNTIDGAEEALKEAYKDGLLVIPGV 61
>gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit
B. Members of this largely archaeal protein family are
subunit B of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdB)
from molybdenum-containing (FmdB) forms of this enzyme.
Length = 421
Score = 29.6 bits (67), Expect = 4.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 208 IDKAVSLLKEAKKPLI 223
I+KA +LK AK+PLI
Sbjct: 66 IEKAAEILKNAKRPLI 81
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
aminotransferase.
Length = 680
Score = 29.7 bits (67), Expect = 4.3
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 213 SLLKEAKKPLIVFGKGAAYARA-EGELK----KLVESTGIPFLPTPMGKG---LLPDTHP 264
LL + + L+VFG+G YA A EG LK L+ S GI L M G L+ +T P
Sbjct: 529 ELLIDEQS-LLVFGRGYNYATALEGALKVKEVALMHSEGI--LAGEMKHGPLALVDETLP 585
Query: 265 LAATAAR 271
+ A R
Sbjct: 586 IIVIATR 592
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription].
Length = 281
Score = 29.2 bits (66), Expect = 4.5
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
EKLL +A E T + +++AV LL +A++ + FG G++ A +L +
Sbjct: 97 LEKLLAANIAALER-TLNLLDEEALERAVELLAKARR-IYFFGLGSSGLVAS-DLAYKLM 153
Query: 244 STGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVV 284
G+ + L DTH A + DV + +
Sbjct: 154 RIGLNVV-------ALSDTHGQLMQLA---LLTPGDVVIAI 184
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 4.6
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 180 SVSEAEKLLKEAESAKETVTQ---------GGIVN--SDIDKAVSLLKEAK 219
+ + EK L+E E AKE + + G + ++ KA+ LK+AK
Sbjct: 385 TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAK 435
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 28.9 bits (65), Expect = 5.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 182 SEAEKLLKEAESAKETVTQGG-----IVNSDIDKAVSLLKEA 218
+ EK+ K E+A++ IVN D+D+A LKE
Sbjct: 138 EQEEKINKRMEAAEQEFQHYALFDYIIVNDDLDEAYKKLKEI 179
>gnl|CDD|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The
NuoG/Nad11/75-kDa subunit (second domain) of the
NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory
complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is
the first energy-transducting complex in the respiratory
chains of many prokaryotes and eukaryotes. Mitochondrial
complex I and its bacterial counterpart, NDH-1, function
as a redox pump that uses the redox energy to
translocate H+ ions across the membrane, resulting in a
significant contribution to energy production. The
atomic structure of complex I is not known and the
mechanisms of electron transfer and proton pumping are
not established. The nad11 gene codes for the largest
(75-kDa) subunit of the mitochondrial NADH:ubiquinone
oxidoreductase, it constitutes the electron input part
of the enzyme, or the so-called NADH dehydrogenase
fragment. In Escherichia coli, this subunit is encoded
by the nuoG gene, and is part of the 14 distinct
subunits constituting the 'minimal' functional enzyme.
The nad11 gene is nuclear-encoded in animals, plants,
and fungi, but is still encoded in the mitochondrial
genome of some protists. The Nad11/NuoG subunit is made
of two domains: the first contains three binding sites
for FeS clusters (the fer2 domain), the second domain
(this CD), is of unknown function or, as postulated, has
lost an ancestral formate dehydrogenase activity that
became redundant during the evolution of the complex I
enzyme. Although only vestigial sequence evidence
remains of a molybdopterin binding site, this protein
domain family belongs to the molybdopterin_binding
(MopB) superfamily of proteins. Bacterial type II
NADH-quinone oxidoreductases and NQR-type sodium-motive
NADH-quinone oxidoreductases are not homologs of this
domain family.
Length = 386
Score = 29.2 bits (66), Expect = 5.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 215 LKEAKKPLIVFGKGAAYARAEGELKKLVE 243
LK+AKKPLI+ G A LK L
Sbjct: 225 LKKAKKPLIILGSSALRKDGAAILKALAN 253
>gnl|CDD|216840 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase.
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA.
The TRM1 gene of Saccharomyces cerevisiae is necessary
for the N2,N2-dimethylguanosine modification of both
mitochondrial and cytoplasmic tRNAs. The enzyme is found
in both eukaryotes and archaebacteria.
Length = 375
Score = 29.3 bits (66), Expect = 5.3
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 34/110 (30%)
Query: 292 LHFGEP----PKWSKD-VKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFC 346
H P P K+ V+ +L E K +L++I +E+ D P
Sbjct: 268 FHLAGPLWLGPLHDKEFVEEMLEIAESPPEEFSK-------RILGLLKLIKEELLDVPLY 320
Query: 347 LGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVG 396
+ +VLK+ V P++ + A+L G
Sbjct: 321 YDLHQ----------LASVLKLSVP------------PLQDVVSALLNAG 348
>gnl|CDD|238127 cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces
7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH
as a cofactor. This is an essential step in the
biosynthesis of deoxythymidine phosphate since
5,6,7,8-tetrahydrofolate is required to regenerate
5,10-methylenetetrahydrofolate which is then utilized by
thymidylate synthase. Inhibition of DHFR interrupts
thymidilate synthesis and DNA replication, inhibitors of
DHFR (such as Methotrexate) are used in cancer
chemotherapy. 5,6,7,8-tetrahydrofolate also is involved
in glycine, serine, and threonine metabolism and
aminoacyl-tRNA biosynthesis.
Length = 158
Score = 28.3 bits (64), Expect = 5.6
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 193 SAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKL------VESTG 246
+G V +++A+ L + + + V G Y +A +L E G
Sbjct: 65 QLDYQDAEGVEVVHSLEEALELAENTVEEIFVIGGAEIYKQALPYADRLYLTRIHAEFEG 124
Query: 247 IPFLP 251
F P
Sbjct: 125 DTFFP 129
>gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is a member of the
iron-activated alcohol dehydrogenase-like family. They
are distinct from other alcohol dehydrogenases which
contains different protein domain. Proteins of this
family have not been characterized. Their specific
function is unknown. They are mainly found in bacteria.
Length = 374
Score = 29.1 bits (66), Expect = 6.4
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 39 PVT-SLANRAVQLGVR-FIAF--HNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAG 94
P+T +L + G R + E +A A L G GI L +G G VHGLAG
Sbjct: 201 PLTDALCRSGLPRGARALRRACENGEDAAARDDMALASLLG--GIALANAGLGAVHGLAG 258
Query: 95 LSNGMIN 101
G+ +
Sbjct: 259 PIGGLFD 265
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 28.7 bits (64), Expect = 7.5
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 303 DVKFVLVDVCKEEIELRKPH---LGL------VGDAKKVLEMINKEIK----DEPFC--- 346
K + VD+ +E+I+L + H L L + DA+++ E + D P C
Sbjct: 262 QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP-CTSL 320
Query: 347 -LGKNHPWVEAIWKKTKDNVLKM-EVQL 372
+NHP E + + K++ K+ E+QL
Sbjct: 321 GTARNHP--EVLRRVNKEDFKKLSEIQL 346
>gnl|CDD|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated.
Length = 791
Score = 28.8 bits (65), Expect = 7.9
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 215 LKEAKKPLIVFGKGA-------AYARAEGELKKLVESTGIPFLPT---PMGKGLLPDTHP 264
L AKKPLI+ G A A A LK GI + MG LL
Sbjct: 434 LAGAKKPLIISGTSAGSPAIIEAAANVAKALKGRGADVGITLVAPEANSMGLALL-GGGS 492
Query: 265 LAATAARSLAIGQCDVALVVGARL 288
L L G+ D +V+ L
Sbjct: 493 LEEALEE-LESGRADAVIVLENDL 515
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 28.6 bits (64), Expect = 8.6
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 265 LAATAARSLAIGQCDVALVVGA 286
L + A+ LA G CDVALVVGA
Sbjct: 92 LQSARAQILA-GLCDVALVVGA 112
>gnl|CDD|99750 cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of
mainly bacterial proteins, with a few members found in
fungi, plants, and archaea. Escherichia coli YdcF has
been shown to bind S-adenosyl-L-methionine (AdoMet), but
a biochemical function has not been idenitified. The
family also includes Escherichia coli sanA and
Salmonella typhimurium sfiX, which are involved in
vancomycin resistance; sfiX may also be involved in
murein synthesis.
Length = 150
Score = 27.7 bits (62), Expect = 8.8
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 208 IDKAVSLLKEAKKPLIVF--GKGAAYARAEGEL-KKLVESTGIP 248
+D A L + P ++ G+G +E E + + G+P
Sbjct: 23 LDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP 66
>gnl|CDD|217190 pfam02698, DUF218, DUF218 domain. This large family of proteins
contains several highly conserved charged amino acids,
suggesting this may be an enzymatic domain (Bateman A
pers. obs). The family includes SanA, which is involved
in Vancomycin resistance. This protein may be involved
in murein synthesis.
Length = 148
Score = 27.6 bits (62), Expect = 9.2
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 208 IDKAVSLLKEAKKPLIVF--GKGAAYARAEGEL-KKLVESTGIP 248
+D A L + P I+ G G +E E+ ++ + G+P
Sbjct: 19 LDAAAELYRAGPAPRIIVSGGAGGGEPVSEAEVMRRYLVELGVP 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,554,865
Number of extensions: 2453329
Number of successful extensions: 2923
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2754
Number of HSP's successfully gapped: 162
Length of query: 482
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 381
Effective length of database: 6,457,848
Effective search space: 2460440088
Effective search space used: 2460440088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)