RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011590
(482 letters)
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 388 bits (1000), Expect = e-130
Identities = 190/471 (40%), Positives = 285/471 (60%), Gaps = 15/471 (3%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYA 66
+ DG + +L + M+GVVGIP+T+LA G RF +F +EQ AGYA
Sbjct: 3 NDDNVELTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYA 62
Query: 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQE 124
AS GY+ GKPG+ LTVS PG ++G+ L++ N +P++++SGS +++ D +GD++E
Sbjct: 63 ASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEE 122
Query: 125 LDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEA 184
+DQ+ +P K + + I ++P +A+ + AVSGRPGG Y+DLP + QTISV EA
Sbjct: 123 MDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEA 182
Query: 185 EKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVES 244
KLL + I +A L+K AK+P+I+ GKGAAYA+ + E++ LVE
Sbjct: 183 NKLLFKPIDP---APAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEE 239
Query: 245 TGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDV 304
TGIPFLP M KGLLPD HP +A A R+ A+ QCDV +++GARLNWL+ G+ W ++
Sbjct: 240 TGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDEL 299
Query: 305 -KFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTK 362
K+V +D+ E++ + +VGD K + ++ K +K P + W A+ K
Sbjct: 300 KKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALKGAP---KADAEWTGALKAKVD 356
Query: 363 DNVLKMEVQLAKDVV--PFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQT 420
N K+ ++ + N+ + ++RD +L +P LV+EGAN +D R ++
Sbjct: 357 GNKAKLAGKMTAETPSGMMNYSNSLGVVRDFML--ANPDISLVNEGANALDNTRMIVDML 414
Query: 421 EPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVEV 471
+PR RLD+GTWG MG+G+GYC+AAA A + V+AVEGDS FGFS +E+E
Sbjct: 415 KPRKRLDSGTWGVMGIGMGYCVAAA-AVTGKPVIAVEGDSAFGFSGMELET 464
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 365 bits (940), Expect = e-121
Identities = 193/466 (41%), Positives = 285/466 (61%), Gaps = 12/466 (2%)
Query: 8 NSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYAA 67
+ Q DG + ++L ++GVVGIPVT +A A G+R+I F +EQSAGYAA
Sbjct: 2 SDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAEGIRYIGFRHEQSAGYAA 61
Query: 68 SAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQK--DFGRGDFQEL 125
+A G+LT KPGI LTVS PG ++GL L+N +N +P++MISGS D+ D +GD++EL
Sbjct: 62 AASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEEL 121
Query: 126 DQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAE 185
DQ+ A KP++K A + ++ +A+ + +VSGRPGG YLDLP +VL T+ EA
Sbjct: 122 DQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEAL 181
Query: 186 KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVEST 245
+ + E+ + + A+SLL +A++PLI+ GKGAAY++A+ +L++ +ES
Sbjct: 182 TTIVKVENPSPALL---PCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESA 238
Query: 246 GIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVK 305
IPFLP M KG+L DTHPL+A AARS A+ DV ++VGARLNWLL W+ D +
Sbjct: 239 QIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLA-HGKKGWAADTQ 297
Query: 306 FVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDN 364
F+ +D+ +EI+ R + +VGD ++ + E+K F W + + + N
Sbjct: 298 FIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTF--TTPLVWRDILNIHKQQN 355
Query: 365 VLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRC 424
KM +L+ D P N+ + +RD + + LV+EGANT+D R ++ +PR
Sbjct: 356 AQKMHEKLSTDTQPLNYFNALSAVRDVL--RENQDIYLVNEGANTLDNARNIIDMYKPRR 413
Query: 425 RLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGFGFSAVEVE 470
RLD GTWG MG+G+GY I A++ VVA+EGDS FGFS +E+E
Sbjct: 414 RLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIE 458
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 216 bits (552), Expect = 6e-64
Identities = 89/468 (19%), Positives = 163/468 (34%), Gaps = 41/468 (8%)
Query: 11 NAQIDGNTLAAKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYA 66
+ +I+ K L +GA ++G+ + ++ + V+F+ +E+ A
Sbjct: 1 DNKINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEE--ENNVKFLQVKHEEVGAMA 58
Query: 67 ASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELD 126
A G G+ + GPG H + GL + ++ P+V I GS Q++ FQEL+
Sbjct: 59 AVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELNMDAFQELN 118
Query: 127 QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEK 186
Q + + + ++PK V + A++ R G L++P D I +
Sbjct: 119 QNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR-GVAVLEVPGDFAKVEIDNDQWYS 177
Query: 187 LLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTG 246
DID AV LL +K+P+I G G +++L
Sbjct: 178 SANSLRKYAPIAPAAQ----DIDAAVELLNNSKRPVIYAGIGTMGHGPA--VQELARKIK 231
Query: 247 IPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHFGE--- 296
P + T + I + D L G+ F
Sbjct: 232 APVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSN------FPFSEV 285
Query: 297 PPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVE 355
+ F+ +D+ + R + ++GDA ++ I ++ W
Sbjct: 286 EGTFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVE-----ESAWWT 340
Query: 356 AIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTMDVGR 414
A K + + + K+ + ++ AI I + G +T R
Sbjct: 341 ANLKNIANWREYINMLETKEEGD---LQFYQVYN-AINNHADEDAIYSIDVGNSTQTSIR 396
Query: 415 AVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
L T + + TMG+ + + A P+R V + GD F
Sbjct: 397 -HLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAF 443
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 215 bits (549), Expect = 2e-63
Identities = 105/473 (22%), Positives = 193/473 (40%), Gaps = 43/473 (9%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSA 63
+ ++ I K L +G H++G+ G + A A + + +I +E+
Sbjct: 4 KQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMD-ALSAERDRIHYIQVRHEEVG 62
Query: 64 GYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
AA+A LTGK G+ +GPG H + GL + + P++ + G FQ
Sbjct: 63 AMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQ 122
Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
E+++ + + V A + +P + + + RA + + G + +P D+ Q I +
Sbjct: 123 EMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ-GVAVVQIPVDLPWQQIPAED 181
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
+ + + + L A++PLI +G GA A E L++L +
Sbjct: 182 WYA--SANSYQTPLLPEPD--VQAVTRLTQTLLAAERPLIYYGIGARKAGKE--LEQLSK 235
Query: 244 STGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGARLNWLLHF-- 294
+ IP + T KG++ D +P A + A+ Q DV L VG +
Sbjct: 236 TLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNN------YPF 289
Query: 295 ---GEPPKWSKDVKFVLVDVCKEEIELR-KPHLGLVGDAKKVLEMINKEIKDEPFCLGKN 350
+ F+ +D+ ++ R K + ++ DA+K L I ++ + +
Sbjct: 290 AEVS--KAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVSERE-----S 342
Query: 351 HPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANT 409
PW +A K+ + K P + +++R A+ + P I + G
Sbjct: 343 TPWWQANLANVKNWRAYLASLEDKQEGP---LQAYQVLR-AVNKIAEPDAIYSIDVGDIN 398
Query: 410 MDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
++ R L T + + + TMGVG+ IAA + PER V + GD G
Sbjct: 399 LNANR-HLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGA 450
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 212 bits (543), Expect = 8e-63
Identities = 92/466 (19%), Positives = 169/466 (36%), Gaps = 65/466 (13%)
Query: 22 KSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGKPG 78
K+L G ++GV G ++ NR + +++ +E+ A +AA A L+G+
Sbjct: 11 KTLESAGVKRIWGVTGDSLNGLSDSLNR--MGTIEWMSTRHEEVAAFAAGAEAQLSGELA 68
Query: 79 ILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFA 138
+ GPG +H + GL + N P++ I+ + G G FQE E + S +
Sbjct: 69 VCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYC 128
Query: 139 VKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETV 198
++P+ +A + +AV R G + LP DV + + V
Sbjct: 129 ELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPAPEGATMHWYHAPQP----V 183
Query: 199 TQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGL 258
++ K LL+ + ++ G G A A EL + P + GK
Sbjct: 184 VTPE--EEELRKLAQLLRYSSNIALMCGSGCAGAHK--ELVEFAGKIKAPIVHALRGKEH 239
Query: 259 LPDTHPLAA-------TAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDV 311
+ +P ++ + D +++G + + + D K + +D+
Sbjct: 240 VEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFY------PTDAKIIQIDI 293
Query: 312 CKEEIELRKP-HLGLVGDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEV 370
I + LVGD K L + ++++ + +++ + +D ++
Sbjct: 294 NPASIGAHSKVDMALVGDIKSTLRALLPLVEEKA-----DRKFLDKALEDYRDARKGLDD 348
Query: 371 QLAKDVVPFNFMTPMRIIR--------DAILGVGSPAPILVSEGANTMDVGRAV------ 416
+ P + + DAI T DVG
Sbjct: 349 LAKPSEKAIH---PQYLAQQISHFAADDAIF---------------TCDVGTPTVWAARY 390
Query: 417 LVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
L R L + G+M + + A PER VVA+ GD GF
Sbjct: 391 LKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGF 436
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 207 bits (530), Expect = 7e-61
Identities = 110/472 (23%), Positives = 186/472 (39%), Gaps = 41/472 (8%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAGYA 66
Q G L L G +FG+ G + + + + +R I +E +A +
Sbjct: 4 QYPVRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFM 63
Query: 67 ASAYGYLTGKPGILLTVSGPGC---VHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
A+A G +TGK G+ L SGPGC + G+A P+V + G+ + D + Q
Sbjct: 64 AAAVGRITGKAGVALVTSGPGCSNLITGMA---TANSEGDPVVALGGAVKRADKAKQVHQ 120
Query: 124 ELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
+D V P +K+A++ + + V+ A GRPG ++ LP DV+ +S
Sbjct: 121 SMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKV 180
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVE 243
G + ID+ L+ +AK P+ + G A+ L++L+E
Sbjct: 181 LPA--------SGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLE 232
Query: 244 STGIPFLPTPMGKGLLPDTH-PLAA-------TAARSLAIGQCDVALVVGARLNWLLHFG 295
++ IP T G + + A A + D+ + +G
Sbjct: 233 TSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYS------PV 286
Query: 296 E--PPKW-SKDVKFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCLGKNH 351
E P W S + V +DV E P + LVGD L + + I
Sbjct: 287 EYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHR----LVLS 342
Query: 352 PWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GANTM 410
P I + + + + + + P+RI+R + + + L + G+ +
Sbjct: 343 PQAAEILRDRQH--QRELLDRRGAQLNQFALHPLRIVRA-MQDIVNSDVTLTVDMGSFHI 399
Query: 411 DVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+ R + R + + TMGV L + I A + PER VV+V GD GF
Sbjct: 400 WIARYLYT-FRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGF 450
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 207 bits (528), Expect = 1e-60
Identities = 80/482 (16%), Positives = 157/482 (32%), Gaps = 73/482 (15%)
Query: 9 SQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQSAG 64
+ + + ++L GA MFG+ G +P + +E + G
Sbjct: 16 PRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEE---TQILPLHTLSHEPAVG 72
Query: 65 YAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGD 121
+AA A + G+ G G V+ +AG P+V+ISG+ + G
Sbjct: 73 FAADAAARYSSTLGVAAVTYGAGAFNMVNAVAG---AYAEKSPVVVISGAPGTTEGNAGL 129
Query: 122 --FQELD----QVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVL 175
+ Q + K + + D + P +A+VL A + YL++P +++
Sbjct: 130 LLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVL-GAARAQSRPVYLEIPRNMV 188
Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
+ + + A D+ ++ ++ A P+++ E
Sbjct: 189 NAEVEPVGDDPAWPVDRDALAAC---------ADEVLAAMRSATSPVLMVCVEVRRYGLE 239
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHPLAA--------TAARSLAIGQCDVALVVGAR 287
++ +L + G+P + T MG+GLL D A + + + D ++GA
Sbjct: 240 AKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAI 299
Query: 288 L---NWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDE 343
L N F + K + + + L G +LE + +
Sbjct: 300 LSDTN----FAVSQRKIDLRKTIHAFDRAVTLGYHTYADIPLAGLVDALLERLPPSDRTT 355
Query: 344 PFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--DAILGVGSPAPI 401
+P + + PM I R + + G +
Sbjct: 356 RGKEPHAYPT----GLQADGEPIA----------------PMDIARAVNDRVRAGQEPLL 395
Query: 402 LVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDS 460
+ ++ G + G + MG G+ I A + ++ V GD
Sbjct: 396 IAADMGDCLF--TAM---DMIDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDG 450
Query: 461 GF 462
F
Sbjct: 451 AF 452
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 204 bits (521), Expect = 1e-59
Identities = 103/496 (20%), Positives = 179/496 (36%), Gaps = 68/496 (13%)
Query: 4 SELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSA 63
S + + + + L G +FGVVG S+ V+ G+ F+ +E +A
Sbjct: 2 SRVSTAPSGKPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE-GIDFVLTRHEFTA 60
Query: 64 GYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDF-GR 119
G AA +TG+P GPG G+A +++ P++ ++ + D
Sbjct: 61 GVAADVLARITGRPQACWATLGPGMTNLSTGIA---TSVLDRSPVIALAAQSESHDIFPN 117
Query: 120 GDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI 179
Q LD V V P SK+AV+ + E+ V + A++ G ++ LP D+L +
Sbjct: 118 DTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSE 177
Query: 180 SVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELK 239
+ AK D+A +LL EAK P++V G A + A ++
Sbjct: 178 GIDTTVPNPPANTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIR 237
Query: 240 KLVESTGIPFLPTPMGKGLLPDTHPLAA------------TAARSLAIGQCDVALVVGAR 287
L E IP + T + KG+LP H L A D+ L VG
Sbjct: 238 ALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYD 297
Query: 288 LNWLLHF-----GEPPKWSKDVKFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIK 341
+ + + K V + I + +P + +V D +E
Sbjct: 298 ------YAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351
Query: 342 DEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--DAILGVGSPA 399
K +E + + + + E + M ++I + ++ +
Sbjct: 352 SFG---AKQRHDIEPLRARIAEFLADPE-------TYEDGMRVHQVIDSMNTVMEEAAEP 401
Query: 400 P--ILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAI 446
+VS D+G +P L + + G G+ I A +
Sbjct: 402 GEGTIVS------DIG-----FFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQM 450
Query: 447 ACPERLVVAVEGDSGF 462
A P++ + GD GF
Sbjct: 451 ARPDQPTFLIAGDGGF 466
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 200 bits (512), Expect = 5e-58
Identities = 123/493 (24%), Positives = 192/493 (38%), Gaps = 77/493 (15%)
Query: 7 QNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPV-TSLANRAVQLGVRFIAFHNEQS 62
+ A++ A L G T FGV G P +++ G+R I + +
Sbjct: 20 HMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRK---HGGIRHILARHVEG 76
Query: 63 AGYAASAYGYLT-GKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKDFG 118
A + A Y T G G+ L SGP + L + ++ PI+ I+G +
Sbjct: 77 ASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALY---SASADSIPILCITGQAPRARLH 133
Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
+ DFQ +D KP SK AV ++ VP+ + Q SGRPG +DLP DV
Sbjct: 134 KEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAE 193
Query: 179 ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
I K ++ I+KAV +L +A++P+IV G G A A L
Sbjct: 194 IEFDPDMYE--PLPVYKPAASRM-----QIEKAVEMLIQAERPVIVAGGGVINADAAALL 246
Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPLAA-------TAARS-LAIGQCDVALVVGARLNW 290
++ E T +P +PT MG G +PD H L A + D+ +G R
Sbjct: 247 QQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNR--- 303
Query: 291 LLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
F G K+++ K V +D+ +I + P LG+V DAK L ++ + ++
Sbjct: 304 ---FANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQ 360
Query: 345 FCLGKNH--PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400
WV K+T + K D VP + P R+ +
Sbjct: 361 KAGRLPCRKEWVADCQQRKRT--LLRKTH----FDNVP---VKPQRVYE-EMNKAFGRDV 410
Query: 401 ILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIACP 449
V+ +G + R ++ G G +G + + A P
Sbjct: 411 CYVT------TIG-----LSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADP 459
Query: 450 ERLVVAVEGDSGF 462
+R VVA+ GD F
Sbjct: 460 KRNVVAISGDFDF 472
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 193 bits (494), Expect = 2e-55
Identities = 90/434 (20%), Positives = 154/434 (35%), Gaps = 62/434 (14%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
E + + Y Y+ + + G + A + P V I + D + GR
Sbjct: 52 ELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAGR 111
Query: 120 GD-FQELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176
+ Q++ P ++ V+ + +V + + + A G Y+D+P D+
Sbjct: 112 SEAAQQVPWQS-FTPIARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTA 168
Query: 177 QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236
I A AK + N D+ +A + L AK P+I+ G G A +
Sbjct: 169 DQIDDKALVPR--GATRAKSVLH---APNEDVREAAAQLVAAKNPVILAGGGVARSGGSE 223
Query: 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAA-------TAARSLAIGQCDVALVVGARLN 289
L KL E G+P + T G G+ P+TH LA + + + D LV+G+R
Sbjct: 224 ALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSR-- 281
Query: 290 WLLHFGE----PPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
+ +K KFV VD + P L +V DAK +E + + +
Sbjct: 282 ----LSDWGIAQGYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLPGTS 337
Query: 345 FCLGKNH---PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399
+ ++ D + Q + D +P + R + + V P
Sbjct: 338 GFKAVRYQERENFRQATEFRAAWD--GWVREQESGDGMP---ASMFRAMA-EVRKVQRPE 391
Query: 400 PILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIAC 448
I+V+ D+G PR + + G +G G + A +A
Sbjct: 392 DIIVT------DIG-----NHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAE 440
Query: 449 PERLVVAVEGDSGF 462
P V GD
Sbjct: 441 PNSRVFLGTGDGAL 454
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 188 bits (480), Expect = 2e-53
Identities = 116/449 (25%), Positives = 186/449 (41%), Gaps = 97/449 (21%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKD 116
EQ +AA Y +GKPGI + SGPG V GLA + ++++ P+V I+G ++
Sbjct: 59 EQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLA---DALLDSVPLVAITGQVPRRM 115
Query: 117 FGRGDFQELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDV 174
G FQE VE + +K + V D+ ++P+ + + A SGRPG +D+P D+
Sbjct: 116 IGTDAFQETPIVEVTRSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPKDI 173
Query: 175 LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234
Q + + + + +S +++ V L+ E+KKP++ G G +
Sbjct: 174 QQQLAIPNWEQAM--RLPGYMSRM-PKPPEDSHLEQIVRLISESKKPVLYVGGGCL--NS 228
Query: 235 EGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQCDVALVVGAR 287
EL + VE TGIP T MG G P L+ T + A+ D+ L G R
Sbjct: 229 SDELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHGTVYANYAVEHSDLLLAFGVR 288
Query: 288 LNWLLHF-----GEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIK 341
F G+ ++ K V +D+ EI + + PH+ + GD K L+ +NK ++
Sbjct: 289 ------FDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342
Query: 342 DEPFCLGKNH-PWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIR--------- 389
+ L + W + K+ P +F T I
Sbjct: 343 NRAEELKLDFGVWRNELNVQKQKF---------------PLSFKTFGEAIPPQYAIKVLD 387
Query: 390 -----DAILGVGSPAPILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGT 433
AI+ + VG Q +PR L +G G
Sbjct: 388 ELTDGKAII---------------STGVG-----QHQMWAAQFYNYKKPRQWLSSGGLGA 427
Query: 434 MGVGLGYCIAAAIACPERLVVAVEGDSGF 462
MG GL I A++A P+ +VV ++GD F
Sbjct: 428 MGFGLPAAIGASVANPDAIVVDIDGDGSF 456
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 185 bits (473), Expect = 1e-52
Identities = 94/437 (21%), Positives = 160/437 (36%), Gaps = 69/437 (15%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMISGSCDQKD 116
E +AG+AA Y K G+ L +G G V +A N ++ P++ ++GS +D
Sbjct: 50 EAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIA---NAWLDRTPVLFLTGSGALRD 106
Query: 117 FGRGDFQE-LDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173
Q +DQV P +K V +P+ V Q + A+S G LDLP D
Sbjct: 107 DETNTLQAGIDQVAMAAPITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164
Query: 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+L I + + + +D+D+A++LL++A++P+IV G A+
Sbjct: 165 ILMNQIDEDSVIIP--DLVLSAHG-ARPD--PADLDQALALLRKAERPVIVLGSEASRTA 219
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAA------TAARSLAIGQCDVALVVGAR 287
+ L V +TG+P G +L + + A D+ L++GAR
Sbjct: 220 RKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGAR 279
Query: 288 LNWLLHF-----GEPPKWS-KDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEI 340
F + + + VD E+ L+ LG+V D +E + +
Sbjct: 280 ------FGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT 333
Query: 341 KDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSP 398
+ W + + + +A + + P + I
Sbjct: 334 AQDA-AWPDRGDWCAKVTDLAQER------YASIAAKSSSEHALHPFHASQ-VIAKHVDA 385
Query: 399 APILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTMGVGLGYCIAAAIA 447
+V+ D +P L G G+MGVG G + A +A
Sbjct: 386 GVTVVA------DGA-----LTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVA 434
Query: 448 CPE--RLVVAVEGDSGF 462
E R + V GD
Sbjct: 435 DLEAGRRTILVTGDGSV 451
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 181 bits (461), Expect = 2e-50
Identities = 113/448 (25%), Positives = 175/448 (39%), Gaps = 62/448 (13%)
Query: 52 VRFIAFHNEQSAGYAASAYGYLTGKPGILLTVSGPG---CVHGLAGLSNGMINTWPIVMI 108
F+ +EQ AG+ A Y +GKPG++L SGPG V +A + + P+V+
Sbjct: 121 FNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMA---DAFADGIPMVVF 177
Query: 109 SGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYL 168
+G G FQE D V + +K+ V K + E+P + + E A SGRPG +
Sbjct: 178 TGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLV 237
Query: 169 DLPTDVLHQTISVS--EAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 226
DLP DV + L A + + Q V I+KA L+ AKKP++ G
Sbjct: 238 DLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVG 297
Query: 227 KGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLA-------ATAARSLAIGQC 278
G +A LK+L + IP T G G P + A +LA+
Sbjct: 298 AGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNA 357
Query: 279 DVALVVGARL-----NWLLHFGEPPKWSKDVKFVLV---DVCKEEIE-LRKPHLGLVGDA 329
D+ + VGAR + F + + + +V + I + + + + GDA
Sbjct: 358 DLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDA 417
Query: 330 KKVLEMINKEIKDEPFCLGKNHPWVEAI--WKKTKDNVLKMEVQLAKDVVPFNFMTPMRI 387
L + +I + W I WKK + + P +
Sbjct: 418 TTNLGKMMSKIFPVK----ERSEWFAQINKWKKE--YPYAYMEETPGSK-----IKPQTV 466
Query: 388 IR--DAILGVGSPAPILVSEGANTMDVGRAVLVQ-----------TEPRCRLDAGTWGTM 434
I+ + I+ + VG Q P + +G GTM
Sbjct: 467 IKKLSKVANDTGRHVIVTT------GVG-----QHQMWAAQHWTWRNPHTFITSGGLGTM 515
Query: 435 GVGLGYCIAAAIACPERLVVAVEGDSGF 462
G GL I A +A PE LV+ ++GD+ F
Sbjct: 516 GYGLPAAIGAQVAKPESLVIDIDGDASF 543
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 178 bits (453), Expect = 4e-50
Identities = 83/419 (19%), Positives = 137/419 (32%), Gaps = 50/419 (11%)
Query: 60 EQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGR 119
E A Y + KP + S G + + LSN + P+++ +G + G
Sbjct: 47 EACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIGV 106
Query: 120 GDF-QELDQVEAVKPFSK--FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLH 176
+D +P K + EVP +++ + A G YL +P D
Sbjct: 107 EALLTNVDAANLPRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWD 164
Query: 177 QTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG 236
+ + S+ + + D+D V L A P IV G A A
Sbjct: 165 KDADPQSHHLFDRHVSSSVR------LNDQDLDILVKALNSASNPAIVLGPDVDAANANA 218
Query: 237 ELKKLVESTGIPFLPTP-MGKGLLPDTHPL------AATAARSLAIGQCDVALVVGARLN 289
+ L E P P + P HP A AA S + DV LV+GA +
Sbjct: 219 DCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAPVF 278
Query: 290 WLLHF--GEPPKW-SKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFC 346
+ +P ++ + + V E +V D + + +++
Sbjct: 279 ---RYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVEESSRQ 335
Query: 347 LGKNHPWVEAIWKKTKDNVLKME--VQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
L E L E D+ P +AI ++
Sbjct: 336 L--PTAAPEPAKVDQDAGRLHPETVFDTLNDMAP----------ENAIY---------LN 374
Query: 405 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
E + T + + + ++ P G +G L I +A PER V+AV GD
Sbjct: 375 ESTSTTAQMWQRLNMR-NPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSA 431
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 177 bits (451), Expect = 1e-49
Identities = 90/479 (18%), Positives = 155/479 (32%), Gaps = 89/479 (18%)
Query: 21 AKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
L+ GA H+FGV G + + + + ++ NE +A YAA Y G
Sbjct: 12 LDRLTDCGADHLFGVPGDYNLQFLDHVIDSP---DICWVGCANELNASYAADGYARCKGF 68
Query: 77 PGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQKD-------FG 118
LLT G G ++G+AG + P++ I G + Q+ G
Sbjct: 69 -AALLTTFGVGELSAMNGIAGSYAEHV--------PVLHIVGAPGTAAQQRGELLHHTLG 119
Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
G+F+ +P + + + + RPG YL LP DV +
Sbjct: 120 DGEFRH--FYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPG--YLMLPADVAKKA 175
Query: 179 ISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGEL 238
+ K+A + + D A + L +K+ ++ + L
Sbjct: 176 ATPPVNALTHKQAHADSACLKA------FRDAAENKLAMSKRTALLADFLVLRHGLKHAL 229
Query: 239 KKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVGARLN- 289
+K V+ + MGKG+ + A+T A AI D L VG R
Sbjct: 230 QKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTD 289
Query: 290 ----WLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
H + + V + ++ + + + ++E+ + +
Sbjct: 290 TLTAGFTHQ------LTPAQTIEVQPHAARVGDVWFTGIPMNQAIETLVELCKQHVHAGL 343
Query: 345 FCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
AI D L T R + P I+++
Sbjct: 344 M-----SSSSGAIPFPQPDGSL----------------TQENFWR-TLQTFIRPGDIILA 381
Query: 405 E-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+ G + G L + WG++G L A ACP R V+ + GD
Sbjct: 382 DQGTSAF--GAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAA 438
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 173 bits (441), Expect = 3e-48
Identities = 82/474 (17%), Positives = 150/474 (31%), Gaps = 76/474 (16%)
Query: 21 AKSLSLFGATHMFGVVG---IPVT-SLANRAVQLGVRFIAFHNEQSAGYAASAYGYLTGK 76
A+ L G H F V G + + L ++ I NE + G++A Y G
Sbjct: 10 AERLVQIGLKHHFAVAGDYNLVLLDQLLLNK---DMKQIYCCNELNCGFSAEGYARSNGA 66
Query: 77 PGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQK-------DFG 118
+ G ++ L G L P+++ISG S DQ G
Sbjct: 67 -AAAVVTFSVGAISAMNALGGAYAENL--------PVILISGAPNSNDQGTGHILHHTIG 117
Query: 119 RGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQT 178
+ D+ Q+E + + A D P + V+ A+ R YLD+ ++ +
Sbjct: 118 KTDYS--YQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPA-YLDIACNIASEP 174
Query: 179 ISVSEAEKL-LKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGE 237
L E E ++ +D V+LL+++ P+++ G A A
Sbjct: 175 CVRPGPVSSLLSEPEIDHTSLKA------AVDATVALLEKSASPVMLLGSKLRAANALAA 228
Query: 238 LKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVGARLN 289
+ L + KG P+ H + + D L + N
Sbjct: 229 TETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFN 288
Query: 290 WLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEIKDEPFCLGK 349
W K +L + + + + + L+ + ++ P K
Sbjct: 289 -DYSTVGWSAWPKGPNVILAEP--DRVTVDGRAYDGF-TLRAFLQALAEKAPARPASAQK 344
Query: 350 NHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSE-GAN 408
+ ++ + + L T I+R I + + LV+E G +
Sbjct: 345 SSVPTCSLTATSDEAGL----------------TNDEIVR-HINALLTSNTTLVAETGDS 387
Query: 409 TMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEGDSGF 462
+ WG +G + A+ +R V + GD F
Sbjct: 388 WF--NAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSF 439
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 172 bits (438), Expect = 8e-48
Identities = 77/486 (15%), Positives = 150/486 (30%), Gaps = 96/486 (19%)
Query: 21 AKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
A+ L G H F V G + + + + NE + G++A Y
Sbjct: 10 AERLVQIGLKHHFAVAGDYNLVLLDNLLLNK--------NMEQVYCCNELNCGFSAEGYA 61
Query: 72 YLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---SCDQKD---- 116
G + G + G L P+++ISG + D
Sbjct: 62 RAKGA-AAAVVTYSVGALSAFDAIGGAYAENL--------PVILISGAPNNNDHAAGHVL 112
Query: 117 ---FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTD 173
G+ D+ Q+E K + A E P + V++ A+ + YL++ +
Sbjct: 113 HHALGKTDYH--YQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPV-YLEIACN 169
Query: 174 VLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYAR 233
+ + L E++ E +N+ +++ + + K ++ G A
Sbjct: 170 IASMPCAAPGPASALFNDEASDEAS-----LNAAVEETLKFIANRDKVAVLVGSKLRAAG 224
Query: 234 AEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVVG 285
AE K ++ G K P+ +P + + + D + +
Sbjct: 225 AEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALA 284
Query: 286 ARLNWLLHFGEPPKWSKDVKFVLVDVCKEEI-ELRKPHLGLVGDAKKVLEMINKEIKDEP 344
N K VL + + +R P + L ++ + ++K+
Sbjct: 285 PVFN-DYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALD 343
Query: 345 FCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
F N ++ L I R + + +P +++
Sbjct: 344 FFKSLNAGELKKAAPADPSAPL----------------VNAEIAR-QVEALLTPNTTVIA 386
Query: 405 E------GANTMDV--GRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAV 456
E A M + G V + WG +G + A+ PER + +
Sbjct: 387 ETGDSWFNAQRMKLPNGARVEYE---------MQWGHIGWSVPAAFGYAVGAPERRNILM 437
Query: 457 EGDSGF 462
GD F
Sbjct: 438 VGDGSF 443
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 170 bits (433), Expect = 4e-47
Identities = 91/501 (18%), Positives = 156/501 (31%), Gaps = 105/501 (20%)
Query: 12 AQIDGNTLAAKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQS 62
++I + L +FG+ G I G+R+ NE +
Sbjct: 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVE--------GMRWAGNANELN 53
Query: 63 AGYAASAYGYLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISG---S 111
A YAA Y + G ++T G G ++G+AG + ++ + G
Sbjct: 54 AAYAADGYARIKGM-SCIITTFGVGELSALNGIAGSYAEHV--------GVLHVVGVPSI 104
Query: 112 CDQKD-------FGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGR-P 163
Q G GDF S+ DI P + + + + P
Sbjct: 105 SAQAKQLLLHHTLGNGDFT--VFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRP 162
Query: 164 GGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLI 223
YL LP +++ + LL+ ID + L K+AK P+I
Sbjct: 163 V--YLGLPANLVDLNVPAK----LLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVI 216
Query: 224 VFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAI 275
+ + + E KKL++ T P TPMGKG + + HP + A+
Sbjct: 217 LADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAV 276
Query: 276 GQCDVALVVGARL------NWLLHFGEPPKWSKDVKFVLVDVCKEEIELRK---PHLGLV 326
D+ L VGA L ++ + K V + +++R P + +
Sbjct: 277 ESADLILSVGALLSDFNTGSFSYSY-------KTKNIVEFHS--DHMKIRNATFPGVQMK 327
Query: 327 GDAKKVLEMINKEIKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMR 386
+K+L I K A L
Sbjct: 328 FVLQKLLTTIADAAKGYK--PVAVPARTPANAAVPASTPL----------------KQEW 369
Query: 387 IIRDAILGVGSPAPILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGL----GYC 441
+ + ++++E G + G + WG++G G
Sbjct: 370 MWN-QLGNFLQEGDVVIAETGTSAF--GINQTTFPNNTYGISQVLWGSIGFTTGATLGAA 426
Query: 442 IAAAIACPERLVVAVEGDSGF 462
AA P++ V+ GD
Sbjct: 427 FAAEEIDPKKRVILFIGDGSL 447
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 168 bits (429), Expect = 2e-46
Identities = 80/484 (16%), Positives = 158/484 (32%), Gaps = 102/484 (21%)
Query: 21 AKSLSLFGATHMFGVVG---------IPVTSLANRAVQLGVRFIAFHNEQSAGYAASAYG 71
L G +FGV G I +++I NE +A Y A Y
Sbjct: 32 LDRLHELGIEEIFGVPGDYNLQFLDQIISRE--------DMKWIGNANELNASYMADGYA 83
Query: 72 YLTGKPGILLTVSGPG---CVHGLAG-----LSNGMINTWPIVMISGSCDQKDFGRGDFQ 123
T K LT G G ++GLAG L P+V I GS K G F
Sbjct: 84 R-TKKAAAFLTTFGVGELSAINGLAGSYAENL--------PVVEIVGSPTSKVQNDGKFV 134
Query: 124 ELD--------QVEAVKPFSKFAVKAKDIT---EVPKCVAQVLERAVSGRPGGCYLDLPT 172
++ +P + E+ + ++Q+L+ +P Y++LP
Sbjct: 135 HHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKE---RKPV--YINLPV 189
Query: 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232
DV + + + + K LK A+KP+++ G
Sbjct: 190 DVAAAKAEKPALSLEKESSTTNTTEQVI-------LSKIEESLKNAQKPVVIAGHEVISF 242
Query: 233 RAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL--------AATAARSLAIGQCDVALVV 284
E + + V T +P GK + ++ P + + + D L++
Sbjct: 243 GLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILML 302
Query: 285 GARLNWLLHF-----GEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKE 339
G + G + K + +++ +E + + D + V+ +++
Sbjct: 303 GVK------LTDSSTGAFTHHLDENKMISLNI--DEGIIFNKVVEDF-DFRAVVSSLSEL 353
Query: 340 IKDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPA 399
E +++ +++ + ++ R+ + A+ +
Sbjct: 354 KGIEY-----EGQYIDKQYEEFIPSSAP--------------LSQDRLWQ-AVESLTQSN 393
Query: 400 PILVSE-GANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAIACPERLVVAVEG 458
+V+E G + G + + + WG++G + + IA E + G
Sbjct: 394 ETIVAEQGTSFF--GASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIG 451
Query: 459 DSGF 462
D
Sbjct: 452 DGSL 455
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 126 bits (318), Expect = 2e-31
Identities = 75/484 (15%), Positives = 158/484 (32%), Gaps = 49/484 (10%)
Query: 6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQS 62
L N + D + L G G P+ + L + +E+S
Sbjct: 3 LTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPIL--KIYVDVDERS 60
Query: 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF 122
AG+ A + +P +LL SG + ++ ++ P+++++ + G
Sbjct: 61 AGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAP 120
Query: 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAV----SGRPGGCYLDLPTDV- 174
Q +DQ+ K ++ E+ + RAV G +L+ P
Sbjct: 121 QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREP 180
Query: 175 LHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARA 234
L + S K+ T + +S I K V+ KK + V G
Sbjct: 181 LVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECT-GKKGVFVVG-PIDKKEL 238
Query: 235 EGELKKLVESTGIPFLPTPM-GKGLLPDTHPLAATAARSL-------AIGQCDVALVVGA 286
E + L + G P L P+ G + + +V + G+
Sbjct: 239 EQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEAEIIDKLTPEVVIRFGS 298
Query: 287 R------LNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340
NWL + + D D ++ + D + +L+++ + +
Sbjct: 299 MPVSKPLKNWLEQLSDIRFYVVDPGAAWKDP------IKAVTDMIHCDERFLLDIMQQNM 352
Query: 341 KDEPFCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAP 400
D+ K+ W+ W + + ++ + +I+ + + A
Sbjct: 353 PDDA----KDAAWLNG-WTSYNKVARE---IVLAEMANTTILEEGKIVAELRRLLPDKAG 404
Query: 401 ILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYCIAAAI--ACPERLVVAVEG 458
+ + DV Q + + ++ A G G+ +++A+ + + + + G
Sbjct: 405 LFIGNSMPIRDVDT-YFSQIDKKIKMLANR-GAN--GIDGVVSSALGASVVFQPMFLLIG 460
Query: 459 DSGF 462
D F
Sbjct: 461 DLSF 464
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 121 bits (305), Expect = 1e-29
Identities = 71/482 (14%), Positives = 143/482 (29%), Gaps = 45/482 (9%)
Query: 6 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANRAVQLGVRFIAFHNEQS 62
L+ + N +L G T G P+ L + +E+S
Sbjct: 23 LEMTVNPITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDI--SVHVQIDERS 80
Query: 63 AGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDF 122
AG+ A +P +L+ SG + + + PI++++ + G
Sbjct: 81 AGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAP 140
Query: 123 QELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAV----SGRPGGCYLDLPTDVL 175
Q ++Q F KF ++ ++ + + + RA G ++++P
Sbjct: 141 QAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREP 200
Query: 176 HQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE 235
E ++ + + +L EA+K +IV G+ + A E
Sbjct: 201 LMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELHSDADKE 260
Query: 236 GELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFG 295
+ L ++ P L P+ A + ++ + + ++ FG
Sbjct: 261 -NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRP--DVVIRFG 317
Query: 296 EPPKWSKDVKFVLVDVCKEEIE-----------LRKPHLGLVGDAKKVLEMINKEIKDEP 344
P SK V L D + + + +A E I +
Sbjct: 318 PMP-VSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAAT 376
Query: 345 FCLGKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVS 404
W+ + + + + + R V + + V
Sbjct: 377 -----RSSEWLEKWQFVNGRFR----EHLQTISSEDVSFEGNLYRILQHLVPENSSLFVG 427
Query: 405 EGANTMDVGRAVLVQTEPRCRLDAGTWGTMGV-GLGYCIAAAIAC---PERLVVAVEGDS 460
DV Q P + G G+ +++A+ + V V GD
Sbjct: 428 NSMPIRDVDTFFEKQDRPF-----RIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDL 482
Query: 461 GF 462
F
Sbjct: 483 SF 484
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 98.3 bits (245), Expect = 5e-22
Identities = 56/479 (11%), Positives = 142/479 (29%), Gaps = 51/479 (10%)
Query: 1 MAGSELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIP---VTSLANRAVQLG-VRFIA 56
M+ S N + A + ++L+ G H + P T L A +
Sbjct: 1 MSVSAF-NRRWAAV-----ILEALTRHGVRH---ICIAPGSRSTLLTLAAAENSAFIHHT 51
Query: 57 FHNEQSAGYAASAYGYLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKD 116
+E+ G+ A ++ +P ++ SG + L + +++++ +
Sbjct: 52 HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPEL 111
Query: 117 FGRGDFQELDQVEAVKPFSKFAV---KAKDITEVPKCVAQVLERAVSGRPGGCYLDLP-T 172
G Q + Q ++ + V+ + + GG +++ P
Sbjct: 112 IDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171
Query: 173 DVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYA 232
+ L+ + + + + ++ + ++ V G A
Sbjct: 172 EPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSA 231
Query: 233 RAEGELKKLVESTGIPFLPTPMG--KGLLPDTHPLAATAARSLAIGQCDVALVVGARL-- 288
++ ++ G P + + LP A + + Q + + +G+ L
Sbjct: 232 EEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTG 291
Query: 289 NWLLHFGEPPKWSKDVKFVLVDVCKEEIE-LRKPHLGLVGDAKKVLEMINKEIKDEPFCL 347
LL + + ++ +VD + ++ L+ + LE+ E
Sbjct: 292 KRLLQW---QASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAE-------- 340
Query: 348 GKNHPWVEAIWKKTKDNVLKMEVQLAKDVVPFNFMTPMRIIRDAILGVGSPAPILVSEGA 407
K PW I + + + + + ++ + + V
Sbjct: 341 -KRQPWCVEIPRLAEQAMQAVIARRDA-------FGEAQLAHRICDYLPEQGQLFVGNSL 392
Query: 408 NTMDVGRAVLVQTEPRCRLDAGTWGTMGV-GLGYCIAAAI---ACPERLVVAVEGDSGF 462
+ + + G G+ ++ A + +A+ GD
Sbjct: 393 VVRLIDALSQLPAGYPV------YSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSA 445
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 6e-09
Identities = 83/503 (16%), Positives = 140/503 (27%), Gaps = 188/503 (37%)
Query: 17 NTLAAKSLSLFGATHMFGVV--GIPV-TSLANRAVQLGVRFIAFHNEQSAGYAASAYGYL 73
+ + + L+L +H G + + V T+ A QL +F E + G+AA
Sbjct: 2 DAYSTRPLTL---SH--GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD----- 51
Query: 74 TGKPGILLTVSGPGCVHGLAG--LSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAV 131
P L G L +S + G F ++ + +
Sbjct: 52 ----------DEPTTPAELVGKFLG----------YVSSLVEPSK--VGQFDQVLNL-CL 88
Query: 132 KPF-SKFAVKAKDI--------TEVPKCVAQVLE--------RAVSGRPGGCYLDLPTDV 174
F + + ++ DI E + + E R ++ RP
Sbjct: 89 TEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP----------- 136
Query: 175 LHQTISVSEAEKLLKEAESAKETVT-----QGGIVNSDIDKAVSLLKEAK------KPLI 223
L + + QG N+D +E + L+
Sbjct: 137 ----FDKKSNSALFRAVGEGNAQLVAIFGGQG---NTD-----DYFEELRDLYQTYHVLV 184
Query: 224 VFGKGAAYARAEGELKKLVEST---------GIPF---LPTPMGKGLLPDTHPLAATAAR 271
G + L +L+ +T G+ L P PD L +
Sbjct: 185 ----GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP---SNTPDKDYLL-SIPI 236
Query: 272 SL-AIG--QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEEIELRKPHLGLVGD 328
S IG Q VV A+L G P ELR G G
Sbjct: 237 SCPLIGVIQL-AHYVVTAKL-----LGFTPG-----------------ELRSYLKGATGH 273
Query: 329 AKKVLEMINKEIKDEPFCLGKNHPWVEAI-----WKKTKDNVLKM---------EVQLAK 374
++ ++ + AI W+ +V K A
Sbjct: 274 SQGLVTAV-------------------AIAETDSWESFFVSVRKAITVLFFIGVRCYEA- 313
Query: 375 DVVPFNFMTPMRIIRDAI-LGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGT 433
P + P I+ D++ G P+P+L V V + L AG
Sbjct: 314 --YPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQEQVQDYV---NKTNSHLPAGKQ-- 365
Query: 434 MGVGLGYCIAAAIAC-PERLVVA 455
+ ++ + LVV+
Sbjct: 366 --------VEISLVNGAKNLVVS 380
Score = 41.6 bits (97), Expect = 7e-04
Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 96/253 (37%)
Query: 29 ATHMFGVVGIPVTSL------ANRAVQLGVR-FIAFHNEQSAGYAASAYGYLTGKPGILL 81
+ M + + + N + G + I+ N A
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNL----------- 377
Query: 82 TVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKA 141
VSGP L GL+ + +K LDQ PFS+
Sbjct: 378 VVSGP--PQSLYGLNLTL--------------RKAKAPSG---LDQSRI--PFSE----- 411
Query: 142 KDITEVPKCVAQVLERAVSGRPGGC-----YLDLPTDVLHQTISVSEAEKLLKEAESAKE 196
K + L P L +D++++ + + A+ +
Sbjct: 412 ----RKLKFSNRFL-------PVASPFHSHLLVPASDLINKDL---VKNNVSFNAKDIQI 457
Query: 197 TV--TQGGIVNSDIDKAVSLLKE------AKKPL-------------IVFGKGAAYARAE 235
V T G SD+ + E + P+ + FG G A
Sbjct: 458 PVYDTFDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG--ASGL 512
Query: 236 GEL-KKLVESTGI 247
G L + + TG+
Sbjct: 513 GVLTHRNKDGTGV 525
Score = 39.3 bits (91), Expect = 0.003
Identities = 49/317 (15%), Positives = 84/317 (26%), Gaps = 138/317 (43%)
Query: 61 QSAGYAASA--YGYLTGKPGILLTVSGPGCVHGLAGLSNGMI--------NTWP------ 104
Q A Y +A G+ PG L + + G G S G++ ++W
Sbjct: 245 QLAHYVVTAKLLGF---TPGELRS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 105 -----IVMISGSCDQKDFGRGDFQELDQVEAVK-----PFSKFAVKAKDITEVPKCVAQV 154
++ G + + ++++ P ++ +V V +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 155 LERAVSGRPGGCYLDLPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAV-- 212
LP + + +S +VN V
Sbjct: 357 NSH------------LPAG---KQVEIS--------------------LVNGA-KNLVVS 380
Query: 213 ----SL------LKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLP------TPMGK 256
SL L++AK P G +R +KL S FLP +
Sbjct: 381 GPPQSLYGLNLTLRKAKAP-----SGLDQSRIPFSERKLKFSNR--FLPVASPFHSH--- 430
Query: 257 GLLPDTHPLAAT---------AARSLAI-------GQCD------------VALVVGARL 288
LL L A+ + I G D V ++ +
Sbjct: 431 -LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-DLRVLSGSISERIVDCIIRLPV 488
Query: 289 NW----------LLHFG 295
W +L FG
Sbjct: 489 KWETTTQFKATHILDFG 505
Score = 36.6 bits (84), Expect = 0.023
Identities = 36/255 (14%), Positives = 64/255 (25%), Gaps = 109/255 (42%)
Query: 5 ELQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANRAVQLGVRFIAFHNEQSAG 64
L +Q Q L + F L ++ + A H S G
Sbjct: 1725 LLSATQFTQP---ALTLMEKAAFED-------------LKSKGLIPADATFAGH---SLG 1765
Query: 65 -YAA-SAYG---------YLTGKPGILLTVSGPGCVHGLAGLSN-GMINTWPIVMISGSC 112
YAA ++ + G+ + V+ P G SN GMI P + +
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPR---DELGRSNYGMIAINPGRVAASFS 1822
Query: 113 DQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERA---VSGRPGGCYLD 169
+ ++ V + V K ++E V
Sbjct: 1823 Q------------EALQYV------------VERVGKRTGWLVEIVNYNVEN-------- 1850
Query: 170 LPTDVLHQTISVSEAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGA 229
Q + G + +D ++L K I
Sbjct: 1851 -------QQYVAA------------------GDLR--ALDTVTNVLNFIKLQKI------ 1877
Query: 230 AYARAEGELKKLVES 244
++ +L +S
Sbjct: 1878 -------DIIELQKS 1885
Score = 33.5 bits (76), Expect = 0.17
Identities = 31/178 (17%), Positives = 49/178 (27%), Gaps = 84/178 (47%)
Query: 23 SLSLF-GATHMFGVVGIPVTSLAN-----------------------RAVQLGVRF--IA 56
+SL GA ++ VV P SL R ++ RF +A
Sbjct: 367 EISLVNGAKNL--VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 57 --FH---------------NEQSAGYAASA-----YGYLTGK----------PGI--LLT 82
FH + + + A Y G I +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 83 VS------------------GPGCVHGLAGLSNGMIN-TWPIVMISGSCDQK---DFG 118
GPG GL L++ + T V+++G+ D D+G
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 46.3 bits (109), Expect = 4e-06
Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 209 DKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAAT 268
+ A ++ +AK+PL++ G A + K+ ++ IP T +L D A
Sbjct: 25 EMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKY 84
Query: 269 AARSLAI--------------GQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVD 310
+ G D+ + +G + ++ K ++K + ++
Sbjct: 85 INAHMLGFYLTDPKWPGLDGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIE 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 7e-06
Identities = 48/357 (13%), Positives = 100/357 (28%), Gaps = 93/357 (26%)
Query: 167 YLDLPTDVLHQT----ISVSEAEKLLKEAESAK-ETVTQGGIVNSDIDKAVSLLKEAKKP 221
++D T +SV E + + + + + + + +ID +
Sbjct: 6 HMDFETGEHQYQYKDILSVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 222 LIVFG----KGA-AYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIG 276
L +F K + E V FL +P+ T + + I
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEE----VLRINYKFLMSPI------KTEQRQPSMMTRMYIE 114
Query: 277 QCDVALVVGARLNWLLHFGEPPKWSKDVKFVLVDVCKEE--IELR------KPHLGLV-- 326
Q D RL + + ++K +V + + ++LR +P ++
Sbjct: 115 QRD-------RL-----YNDNQVFAKY------NVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 327 ---GDAKKVLEMINKEIKDEPFCLGKNHP--WVEAIWKKTKDNVLKMEVQLAKDVVPFNF 381
G K + + W+ + + VL+M +L + P N+
Sbjct: 157 GVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NW 213
Query: 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTE-PRCRL------DAGTWGTM 434
S L R +L C L +A W
Sbjct: 214 ---------TSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 435 GVGLGYC----------IAAAIACPERLVVAVEGDSGFGFSAVEVEV----WLSCII 477
+ C + ++ ++++ + EV+ +L C
Sbjct: 263 NLS---CKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRP 315
Score = 42.9 bits (100), Expect = 2e-04
Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 99/326 (30%)
Query: 125 LDQVEAVKPFSKFAVKAKD-ITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVSE 183
L V+ K ++ F + K +T K V L A + LD + L E
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI---SLDHHSMTLTP----DE 302
Query: 184 AEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKK--PLIVFGKGAAY----ARAEG- 236
+ LL K ++ L +E P + + A +
Sbjct: 303 VKSLL-----LK-------YLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 237 ------ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL--VVGARL 288
+L ++ES+ + L + + L++ + ++ + +
Sbjct: 348 KHVNCDKLTTIIESS-LNVLEPAEYRKMF-----------DRLSVFPPSAHIPTILLSLI 395
Query: 289 NWL-LHFGEPP-------------KWSKDVKFVLVDV-------CKEEIELRKPHLGLVG 327
W + + K K+ + + + E L H
Sbjct: 396 -WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---H----- 446
Query: 328 DAKKVLEMINKEIKDEPFCLGKNHPWVEAIW-------KKTKDNVLKMEV--QLAKDVVP 378
+ +++ N + L P+++ + K ++ +M + + D
Sbjct: 447 --RSIVDHYNIPKTFDSDDLIP--PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--- 499
Query: 379 FNFMTPMRIIRD--AILGVGSPAPIL 402
F F+ +I D A GS L
Sbjct: 500 FRFLE-QKIRHDSTAWNASGSILNTL 524
Score = 39.8 bits (92), Expect = 0.002
Identities = 45/326 (13%), Positives = 90/326 (27%), Gaps = 107/326 (32%)
Query: 89 VHGLAG-------------------LSNGMINTWPIVMIS-GSCDQKDFGRGDFQELDQV 128
+ G+ G + + W ++ +C+ + L+ +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--W----LNLKNCNSPE------TVLEML 202
Query: 129 EA-----VKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGG-CYLDLPTDVLHQTISVS 182
+ ++ + + +I + L R + +P C L L +V Q
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNV--QNAKAW 259
Query: 183 EAEKLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLV 242
A L S K +T + +S L E+K L+
Sbjct: 260 NAFNL-----SCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLL 307
Query: 243 ESTGIPFLPTPMGKGLLP----DTHPLAATAARSLAIGQCDVALVVGARL-NWLLHFGEP 297
+L LP T+P L+I + + + L +
Sbjct: 308 LK----YLDCRPQD--LPREVLTTNPRR------LSI--------IAESIRDGLATWDNW 347
Query: 298 PKWSKDVKFVLVDVCKEEI---ELRKPHLGLV---GDAK---KVLEMINKEIKDEPFCLG 348
+ D +++ + E RK L A +L +I
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------ 395
Query: 349 KNHPWVEAIWKKTKDNVLKMEVQLAK 374
W + K +V+ + +L K
Sbjct: 396 ----W----FDVIKSDVMVVVNKLHK 413
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold
reverse binding of N oxidoreductase; HET: NAP; 2.00A
{Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Length = 207
Score = 40.9 bits (96), Expect = 3e-04
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 28/119 (23%)
Query: 190 EAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPF 249
K G ++D A+ +++EA +I G G A+A+ + LV+
Sbjct: 17 STAGGKPMEISGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVK------ 70
Query: 250 LPTPMGKGLLPDTHPLAATAARSLAI----------------------GQCDVALVVGA 286
+ T GK + HP+A L + D+ LV+GA
Sbjct: 71 MLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGA 129
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase
subunits, oxidoreductas; HET: NAD NAP; 2.30A
{Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A*
1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Length = 203
Score = 40.5 bits (95), Expect = 4e-04
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 28/118 (23%)
Query: 191 AESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFL 250
+A + + A ++K A K +IV G G A A+A+ L+++ + +
Sbjct: 19 VAAAGGAAGDRSVKAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMAD------V 72
Query: 251 PTPMGKGLLPDTHPLAATAARSLAI----------------------GQCDVALVVGA 286
G + HP+A + + DVA V+GA
Sbjct: 73 LKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGA 130
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H)
complex, inverted binding of NADP(H), oxidoreductase;
HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Length = 184
Score = 35.6 bits (82), Expect = 0.017
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
G ++D A+ +++EA +I G G A+A+ + LV+ + + GK +
Sbjct: 4 SGTHTEINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVK------MLSEQGKKVR 57
Query: 260 PDTHPLAATAARSLAIGQCDVAL 282
HP+A GQ +V L
Sbjct: 58 FGIHPVAGRMP-----GQLNVLL 75
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic
transhydrogenase, inner membrane, membrane,
oxidoreductase, transmembrane; HET: NAD NAP; NMR
{Escherichia coli}
Length = 186
Score = 35.2 bits (81), Expect = 0.020
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 189 KEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIP 248
S++E G ++ LLK + +I G G A A+A+ + ++ E
Sbjct: 4 HHHHSSQE---VGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITE----- 55
Query: 249 FLPTPMGKGLLPDTHPLAATAARSLAIGQCDVAL 282
G + HP+A G +V L
Sbjct: 56 -KLRARGINVRFGIHPVAGRLP-----GHMNVLL 83
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold,
oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum}
SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C*
2oo5_C*
Length = 180
Score = 35.2 bits (81), Expect = 0.023
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 200 QGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLL 259
+G + + A ++K A K +IV G G A A+A+ L+++ + + G +
Sbjct: 5 EGRHMAGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMAD------VLKKEGVEVS 58
Query: 260 PDTHPLAATAARSLAIGQCDVAL 282
HP+A G +V L
Sbjct: 59 YAIHPVAGRMP-----GHMNVLL 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.095
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 237 ELKKLVESTGIPFLPTPMGKGLLPDTHPLAATAA 270
LKKL +++ L K D+ P A A
Sbjct: 21 ALKKL-QAS----L-----KLYADDSAPALAIKA 44
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.4 bits (73), Expect = 0.22
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 75 GKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPF 134
G G+ + V+ V + S+ P++ I + D + + L V A +PF
Sbjct: 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFL--VIAYEPF 171
Query: 135 SKFAVK--AKDITEVPKCVAQVLERAVSGRPGGC 166
A++ +I V C
Sbjct: 172 ENIAIELPPNEILFSENNDMDNNNDGVDELNKKC 205
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural
genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Length = 174
Score = 30.5 bits (68), Expect = 0.65
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 211 AVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTP------MGKGLLPDTHP 264
+++K+AK+PL++ G E +KK VE I + T + GL +
Sbjct: 28 VANMIKKAKRPLLIVGPDMTDEMFE-RVKKFVE-KDITVVATGSAITRFIDAGLGEKVNY 85
Query: 265 LAATAARSL----------AIGQCDVALVVGAR 287
G D+ L++G+
Sbjct: 86 AVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSI 118
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 30.1 bits (68), Expect = 1.5
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 351 HPWVEAIWKKTKDNV-LKMEVQLAKDVVPFNFMTP-MRIIRDAILGVGSPAPILVSEGAN 408
+ E + +K EV +++D + + + + I + L + + N
Sbjct: 33 YDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPN 92
Query: 409 TMDVGRAVLVQTEPRCRLDAGTWGTM 434
+ + + + P TW
Sbjct: 93 -VALLPLI---SIPELETWVETWAFS 114
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A*
2mnr_A 1mns_A
Length = 359
Score = 29.5 bits (67), Expect = 2.6
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 382 MTPMRIIRDAILGVGSPAPILVSEGANTMDVGRAVLVQTEPRCRLDAGTWGTMGVGLGYC 441
M+ + I V P V T+ VL+ AG VG Y
Sbjct: 1 MSEVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLI----DLATSAGV-----VGHSYL 51
Query: 442 IAAAIACPERLVVAVE 457
A + L ++
Sbjct: 52 FAYTPVALKSLKQLLD 67
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 28.9 bits (65), Expect = 3.6
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
LP + L D+ L S Q + +VVG L P + + VK VL
Sbjct: 184 LPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLC 243
Query: 310 ---DVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340
V + R L + + + E + +E+
Sbjct: 244 NLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 28.8 bits (64), Expect = 4.0
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 250 LPTPMGKGLLPDTHPLAATAARSLAIGQCDVALVVGARLNWLLHFGEPPKWSKDVKFVLV 309
LP + L D+ L S Q + +VVG L P + + VK VL
Sbjct: 192 LPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLC 251
Query: 310 ---DVCKEEIELRKPHLGLVGDAKKVLEMINKEI 340
V + R L + + + E + +E+
Sbjct: 252 NLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 285
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B
phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo
sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Length = 420
Score = 28.8 bits (64), Expect = 4.7
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 6/127 (4%)
Query: 15 DGNTLAAKSLSLFGATHMFGVVGIPVTSLAN--RAVQLGVRFIAFHNEQSAGYAASAYGY 72
G L+ +LF T + + IP N RA++ G R I +HN A A Y
Sbjct: 39 SGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHNRIHATDVLHAVWY 98
Query: 73 LTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVK 132
LT +P L GC G S+G IN I K D +
Sbjct: 99 LTTRPVPGLQQIHNGCGTGNETDSDGRINHGRI----AYISSKSCSNPDESYGCLSSNIP 154
Query: 133 PFSKFAV 139
A+
Sbjct: 155 ALELMAL 161
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel,
eight parallel beta strands surrounded by eight alpha
helices, lyase; 2.30A {Bacillus subtilis}
Length = 359
Score = 28.3 bits (64), Expect = 6.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 208 IDKAVSLLKEAKKPLIVFGKGAAYA 232
+++ S L + PLI+FG GA++
Sbjct: 233 MNRIFSELAKENVPLIMFGVGASHL 257
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar,
3-hexulose-6-phosphate isomerase structural genomics;
HET: CME CIT; 2.00A {Methanocaldococcus jannaschii}
SCOP: c.80.1.3
Length = 180
Score = 27.3 bits (61), Expect = 9.6
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 186 KLLKEAESAKETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKG 228
++ + + +D + + +AKK + +FG G
Sbjct: 8 DIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKK-IFIFGVG 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,450,067
Number of extensions: 476184
Number of successful extensions: 1420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1301
Number of HSP's successfully gapped: 69
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)