Query 011591
Match_columns 482
No_of_seqs 288 out of 2569
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.1E-50 9E-55 408.7 45.5 376 101-480 12-393 (455)
2 PRK10189 MATE family multidrug 100.0 3.6E-46 7.8E-51 383.2 48.0 373 105-479 28-410 (478)
3 PRK10367 DNA-damage-inducible 100.0 5.3E-45 1.1E-49 371.1 46.2 373 102-479 5-386 (441)
4 PRK00187 multidrug efflux prot 100.0 8.3E-45 1.8E-49 372.8 46.7 372 103-479 7-392 (464)
5 PRK09575 vmrA multidrug efflux 100.0 1.7E-43 3.7E-48 362.4 46.5 370 106-479 12-387 (453)
6 PRK01766 multidrug efflux prot 100.0 2.6E-43 5.6E-48 362.4 47.4 377 99-479 5-390 (456)
7 TIGR00797 matE putative efflux 100.0 6.8E-36 1.5E-40 296.0 43.5 335 114-452 1-340 (342)
8 KOG1347 Uncharacterized membra 100.0 1.6E-34 3.4E-39 292.2 34.8 372 102-479 24-400 (473)
9 TIGR01695 mviN integral membra 100.0 2.7E-30 5.9E-35 269.3 45.0 367 108-480 2-380 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 5.2E-28 1.1E-32 251.2 39.6 360 109-480 2-384 (488)
11 PRK15099 O-antigen translocase 100.0 8E-26 1.7E-30 229.8 37.1 318 108-440 3-326 (416)
12 COG0728 MviN Uncharacterized m 100.0 1E-24 2.2E-29 219.3 43.5 374 106-481 7-390 (518)
13 PF03023 MVIN: MviN-like prote 100.0 7.4E-25 1.6E-29 223.6 40.5 341 136-481 5-356 (451)
14 PRK00187 multidrug efflux prot 99.9 3.7E-22 8.1E-27 205.2 26.2 210 101-310 231-444 (464)
15 PRK01766 multidrug efflux prot 99.9 5E-21 1.1E-25 197.0 25.7 209 101-311 234-443 (456)
16 PRK10189 MATE family multidrug 99.9 1.6E-20 3.4E-25 193.4 28.1 211 102-314 255-466 (478)
17 PRK10459 colanic acid exporter 99.9 3.7E-19 8E-24 185.0 37.5 348 106-479 5-356 (492)
18 COG0534 NorM Na+-driven multid 99.9 1.8E-20 3.8E-25 191.4 26.4 212 99-313 234-446 (455)
19 TIGR01695 mviN integral membra 99.9 2.7E-18 5.9E-23 179.0 34.8 235 102-343 219-456 (502)
20 PRK09575 vmrA multidrug efflux 99.9 2.2E-19 4.8E-24 184.3 25.9 206 102-310 230-436 (453)
21 COG2244 RfbX Membrane protein 99.8 2.3E-17 5E-22 171.1 33.4 354 106-480 6-364 (480)
22 PF03023 MVIN: MviN-like prote 99.8 8.2E-17 1.8E-21 164.5 32.6 208 102-311 194-404 (451)
23 PRK10367 DNA-damage-inducible 99.8 2.3E-17 4.9E-22 168.4 25.5 200 103-310 229-431 (441)
24 PF01554 MatE: MatE; InterPro 99.8 6E-19 1.3E-23 155.1 7.3 161 114-276 1-162 (162)
25 COG0728 MviN Uncharacterized m 99.8 5.7E-15 1.2E-19 149.2 35.7 240 103-348 229-471 (518)
26 TIGR02900 spore_V_B stage V sp 99.8 2.9E-16 6.3E-21 163.2 27.3 203 102-310 221-434 (488)
27 PF01943 Polysacc_synt: Polysa 99.7 7.5E-14 1.6E-18 133.1 33.2 267 109-391 2-271 (273)
28 PRK15099 O-antigen translocase 99.7 2.2E-14 4.7E-19 146.0 25.8 199 102-309 211-411 (416)
29 PRK10459 colanic acid exporter 99.7 4.3E-13 9.3E-18 139.6 34.7 201 102-310 203-405 (492)
30 COG2244 RfbX Membrane protein 99.6 3.1E-13 6.7E-18 140.2 31.1 188 101-295 208-396 (480)
31 PF01554 MatE: MatE; InterPro 99.5 4.1E-15 8.9E-20 130.6 5.0 145 334-480 1-145 (162)
32 PF13440 Polysacc_synt_3: Poly 99.5 3.6E-11 7.8E-16 113.3 32.1 243 125-390 3-249 (251)
33 TIGR00797 matE putative efflux 99.3 1E-10 2.2E-15 115.7 15.8 144 334-479 1-144 (342)
34 KOG1347 Uncharacterized membra 99.0 1.1E-09 2.4E-14 111.6 7.5 207 102-310 243-452 (473)
35 PF07260 ANKH: Progressive ank 98.9 1.2E-05 2.6E-10 75.3 29.9 306 105-425 10-342 (345)
36 PF14667 Polysacc_synt_C: Poly 98.7 2.4E-06 5.2E-11 73.3 18.4 80 230-311 2-81 (146)
37 PF04506 Rft-1: Rft protein; 98.4 5.8E-05 1.3E-09 78.5 21.5 202 106-310 253-470 (549)
38 PF04506 Rft-1: Rft protein; 98.1 0.00033 7.1E-09 73.0 20.6 149 326-475 253-413 (549)
39 KOG2864 Nuclear division RFT1 98.1 0.003 6.6E-08 62.2 24.6 353 112-477 14-395 (530)
40 KOG2864 Nuclear division RFT1 97.8 0.0032 6.9E-08 62.0 20.2 201 106-310 239-449 (530)
41 PF01943 Polysacc_synt: Polysa 97.0 0.0045 9.8E-08 58.5 10.0 71 102-172 201-272 (273)
42 PF07260 ANKH: Progressive ank 96.5 0.17 3.7E-06 48.0 15.8 149 320-476 5-158 (345)
43 COG4267 Predicted membrane pro 96.3 1.2 2.7E-05 43.3 30.5 133 159-309 78-210 (467)
44 PF13440 Polysacc_synt_3: Poly 95.2 0.11 2.4E-06 48.4 9.2 65 107-171 184-250 (251)
45 COG4267 Predicted membrane pro 86.3 36 0.00079 33.6 14.8 95 179-279 320-414 (467)
46 PF04505 Dispanin: Interferon- 74.3 13 0.00028 28.1 6.0 47 377-425 31-77 (82)
47 PF05975 EcsB: Bacterial ABC t 66.8 1.5E+02 0.0031 29.8 16.5 36 177-212 89-124 (386)
48 PF01102 Glycophorin_A: Glycop 34.7 63 0.0014 26.5 3.9 28 284-311 65-92 (122)
49 PF04505 Dispanin: Interferon- 31.8 2.2E+02 0.0048 21.4 6.5 35 161-195 36-70 (82)
50 PRK09535 btuC corrinoid ABC tr 27.5 6.3E+02 0.014 25.2 11.9 36 401-436 301-336 (366)
51 PF03904 DUF334: Domain of unk 27.3 3.2E+02 0.0069 25.0 7.4 38 177-215 142-179 (230)
52 PF06609 TRI12: Fungal trichot 22.7 9.7E+02 0.021 25.7 28.3 31 411-441 316-346 (599)
53 PF14936 p53-inducible11: Tumo 22.1 5.3E+02 0.011 22.5 10.8 50 167-216 33-84 (179)
54 PF04235 DUF418: Protein of un 21.4 5.1E+02 0.011 22.0 14.2 28 177-204 9-36 (163)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.1e-50 Score=408.74 Aligned_cols=376 Identities=21% Similarity=0.245 Sum_probs=357.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 101 IWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 101 ~~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
..++.|+++++++|++++++++.+++++|+.++||+|++++|+.++++++..+...+..+++.|++++++|++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 44456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (482)
+++..++++.++++.+++..++.+.+.++++.+++. ++|+.+.+..|+++..++.|+..++.++.+++++.||+|.++
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 999999999999999999999999999999999976 346999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cC-CchHHHHHHHHHHHHHHHHHHHHHHhhccc--cc--ccccCCCHHHHHHHHHhhHH
Q 011591 261 KALAVASAINGIGDVALCSF-LG-YGIAGAAWATMVSQVVSAYMMIQSLNNKGY--NA--FSFSVPSTNELATILGLAGP 334 (482)
Q Consensus 261 ~~~i~~~~~~i~l~~~li~~-~~-~g~~G~a~a~~is~~i~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~ll~~~~p 334 (482)
+.++++.++|+++|++|++. ++ +|+.|+++||++++++.+++.++++.++++ .. .+..+++++.+|+++++|.|
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p 249 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLP 249 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhccc
Confidence 99999999999999999987 56 999999999999999999999988877652 11 33458899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHH
Q 011591 335 VFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIG 414 (482)
Q Consensus 335 ~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 414 (482)
.++++..+...+.+.+.+++++|++.+|+|+++.++.++.++++.|++++.++++ ++++|+ ||++++|+..+.+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lv-G~~~Ga-~~~~~a~~~~~~~~~~~ 327 (455)
T COG0534 250 IFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILV-GQNLGA-GNYKRARRAARLALKLS 327 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC-CCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 679999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCcccccc
Q 011591 415 STLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQT 480 (482)
Q Consensus 415 ~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t 480 (482)
..++...++++.++++++.++|++|+++.+...+.+++..+..++++.+.++.|++||.||+++..
T Consensus 328 ~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~ 393 (455)
T COG0534 328 LLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF 393 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998653
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=3.6e-46 Score=383.17 Aligned_cols=373 Identities=18% Similarity=0.209 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011591 105 MKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQ 184 (482)
Q Consensus 105 ~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~ 184 (482)
+|+++++++|.++++++..+++++|+.++|++|++++|+++++.++..+...+..|++.+..++++|++|+||+|++++.
T Consensus 28 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~ 107 (478)
T PRK10189 28 WREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAA 107 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 011591 185 ISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALA 264 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 264 (482)
.++++.+++.++++.+++.+.+++++..++.++.|+|+.+.+..|+++..++.|+..+..++++++|+.||++.+++.++
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~ 187 (478)
T PRK10189 108 ARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLING 187 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHH
Confidence 99999999999999999999999999999963357799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh----cCCchHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccc----ccCCCHHHHHHHHHhhHH
Q 011591 265 VASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKG--YNAFS----FSVPSTNELATILGLAGP 334 (482)
Q Consensus 265 ~~~~~~i~l~~~li~~----~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~ll~~~~p 334 (482)
+..++|+++++++++. +++|+.|+++|+.+++++..++..+++.++. ..+.+ +.+++++.+|+++|+|+|
T Consensus 188 ~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P 267 (478)
T PRK10189 188 GMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIP 267 (478)
T ss_pred HHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhcc
Confidence 9999999999999874 3799999999999999999887766654331 11212 123578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHH
Q 011591 335 VFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIG 414 (482)
Q Consensus 335 ~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 414 (482)
.+++.......+.+.+.+++++|++++|+|+++.++.++.++++.|++++.++.+ ++++|+ ||++++|+..+.+..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lv-g~~~Ga-~~~~~a~~~~~~~~~~~ 345 (478)
T PRK10189 268 ASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIIT-GTRLGK-GQIAQAERQLRHVFWLS 345 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC-CCHHHHHHHHHHHHHHH
Confidence 9999999999999989999999999999999999999999999999999999999 679999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 415 STLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 415 ~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
.++++.+++++.++++++..+|++|+++.+.....+++..+..++++.+.+..+.++|.||+++.
T Consensus 346 ~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~ 410 (478)
T PRK10189 346 TLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYA 410 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=371.09 Aligned_cols=373 Identities=18% Similarity=0.230 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG-SSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~l-g~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
+++.|+++++++|.++++++..+++++|+.++||+ |++++|+++++.++..+...+..+++.+..+++||++|+||+|+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45569999999999999999999999999999998 67789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (482)
+++..++++.+.+++++++.++...+.+++..+++. |+|+.+.+..|+++..++.|+..+..++++++|+.||++.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999998888889999999955 668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccc--cCCC-HHHHHHHHHhhHHHH
Q 011591 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG-YNAFSF--SVPS-TNELATILGLAGPVF 336 (482)
Q Consensus 261 ~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~-~~~~~~--~~~~-~~~~~~ll~~~~p~~ 336 (482)
+.++++.++|+++|+++++.+++|+.|+++|+.+++++..++..+++++++ .++.+. .+.+ ++.+|+++|+|.|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 999999999999999999888999999999999999999887776665532 121111 1223 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHH
Q 011591 337 ITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGST 416 (482)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 416 (482)
++...+...+.+.+.+++++|++++|+|+++.++.++.++++.|++++.++.+ ++++|+ ||++++|+..+.+++++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lv-g~~~Ga-~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHS-GQAYGA-RDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 679999 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHH----HhhhhHhhhheeeecCccccc
Q 011591 417 LGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIV----VSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 417 ~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~----~~~~~~~~~g~~~~~g~~~~~ 479 (482)
++.++++++.++++++..+|++|+++.+....++++..+..+ .......++|.+||. |+++.
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~ 386 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHH
Confidence 999999999999999999999999999999999988775422 122233567777776 67654
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=8.3e-45 Score=372.80 Aligned_cols=372 Identities=18% Similarity=0.166 Sum_probs=341.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011591 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQ 182 (482)
Q Consensus 103 ~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~ 182 (482)
+++|+++++++|.+++++++.+++++|+.+++|+|++++|+++++.++.++...+..|++.|..++++|++|+||+|+++
T Consensus 7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~ 86 (464)
T PRK00187 7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGAT 86 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 011591 183 HQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKA 262 (482)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 262 (482)
+.+++++.+.++++++..++.+ +.+++..+++. |+|+.+.+..|+++..++.|+..+...+++++++.|+++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 87 RLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999998887765 67899999954 77999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh----cCCchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc----cccCCCHHHHHHHHHhhH
Q 011591 263 LAVASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKGY-NAF----SFSVPSTNELATILGLAG 333 (482)
Q Consensus 263 ~i~~~~~~i~l~~~li~~----~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~ll~~~~ 333 (482)
++++.++|+++||+|++. +++|+.|+++|+.+++++..+...+++++++. ++. .+.+++++.+|+++|+|+
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 999999999999999864 35899999999999998887766666654322 111 223567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHH
Q 011591 334 PVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLI 413 (482)
Q Consensus 334 p~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 413 (482)
|.++++..+...+.+++.+++++|++++|+++++.++..+.++++.+++++.++++ ++++|+ ||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lv-gq~~Ga-~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRV-GQHYGA-GRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 579999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCC--CH---HHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 414 GSTLGLVLGTIGASVPWFFPNIFTS--DK---SVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 414 ~~~~~~~~~i~~~~~~~~i~~lf~~--d~---~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
+.+++++.++++.++++++.++|++ |+ ++.+....++++..++.++++++.++.++++|.||+++.
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~ 392 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTT 392 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHH
Confidence 9999999999999999999999974 44 688889999999999999999999999999999998764
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.7e-43 Score=362.43 Aligned_cols=370 Identities=15% Similarity=0.125 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q 011591 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQG-SSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQ 184 (482)
Q Consensus 106 k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~l-g~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~ 184 (482)
|+++++++|.++++++..+++++|+.++||+ |++++|+++++.++..+...+..+++.+..++++|++|+||+|++++.
T Consensus 12 k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~ 91 (453)
T PRK09575 12 RTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRI 91 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHH
Confidence 8999999999999999999999999999995 999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 011591 185 ISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALA 264 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i 264 (482)
+++++.+.++++++..++.+.+++++..+++. |+++.+.+..|+++..++.++..+...+.+++++.|+++.+++.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 169 (453)
T PRK09575 92 LTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMV 169 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999999999999999954 6689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc--cccCCCHHHHHHHHHhhHHHHHHHHH
Q 011591 265 VASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGY-NAF--SFSVPSTNELATILGLAGPVFITMIS 341 (482)
Q Consensus 265 ~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ll~~~~p~~~~~~~ 341 (482)
.+.++|+++++++++.+++|+.|+++|+.+++++..++.++++++++. .+. +..+++++.+|+++++|.|.+++...
T Consensus 170 ~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~ 249 (453)
T PRK09575 170 IGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLY 249 (453)
T ss_pred HHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHH
Confidence 999999999999998889999999999999999999887777654432 222 22356788899999999999999999
Q ss_pred HHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 011591 342 KVAFYSLIIYFATSMGT-NTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLV 420 (482)
Q Consensus 342 ~~~~~~i~~~l~~~~g~-~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (482)
+.....+.+.+++++|+ +++|+|+++.++.++.+++..|++.+.++.+ ++++|+ ||++++|+..+.++.+++..+++
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lv-g~~~Ga-~~~~~~~~~~~~~l~l~~~~~~~ 327 (453)
T PRK09575 250 GSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPV-SYYFGA-RQYDNIKKLLKLAMKVTVLAGIA 327 (453)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhcC-CChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 6899999999999999999999999999999 569999 99999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCC-CHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 421 LGTIGASVPWFFPNIFTS-DKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 421 ~~i~~~~~~~~i~~lf~~-d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
.++++.++++++..+|++ ||++.+....++++..++.++++...+..+.++|.||+...
T Consensus 328 ~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 328 WVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999995 78999999999999999999999999999999999998754
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2.6e-43 Score=362.39 Aligned_cols=377 Identities=18% Similarity=0.131 Sum_probs=349.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Q 011591 99 QSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDK 178 (482)
Q Consensus 99 ~~~~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 178 (482)
++.++++|+++++++|.++++++..+++.+|+.+++++|++++++++++.++..+...+..|++.+..+.+||++|+||+
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 34566779999999999999999999999999999999999999999999988887888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 179 NEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
+++++.+++++.+.+++++++.++.+.+++++..+++. |+++.+.+..|+++.+++.++..+..++++++++.|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 162 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKP 162 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 99999999999999999999999999999999999864 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----cCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc-----ccccCCCHHHHHHHH
Q 011591 259 PLKALAVASAINGIGDVALCSF----LGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNA-----FSFSVPSTNELATIL 329 (482)
Q Consensus 259 ~~~~~i~~~~~~i~l~~~li~~----~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll 329 (482)
+++.++++.++|+++++++++. +.+|+.|+++|+.+++++..++..+++++++... .++.+++++.+|+++
T Consensus 163 ~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il 242 (456)
T PRK01766 163 TMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLL 242 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHH
Confidence 9999999999999999999853 4689999999999999999998887776543211 123356788999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHH
Q 011591 330 GLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKS 409 (482)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 409 (482)
++|+|..++...+...+.++..+++++|+.++|+++++.++.++.++++.+++.+.++.+ ++++|+ ||++++|+..+.
T Consensus 243 ~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v-~~~~Ga-~~~~~~~~~~~~ 320 (456)
T PRK01766 243 KLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRV-GFELGA-GRTLDARQYAYI 320 (456)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcC-CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 569999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 410 LLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 410 ~~~~~~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
++.++.+++++.++++..+++++..+|++||++.+....++++..+..++++++.+.++.++|.||+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 390 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVI 390 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=6.8e-36 Score=295.98 Aligned_cols=335 Identities=24% Similarity=0.315 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011591 114 PATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGL 193 (482)
Q Consensus 114 p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 193 (482)
|.++++++..+++.+|+.+++++|++++++++++..+..+...+..+++++..+.+++++|++|+|+.++..++.+.+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999998988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 011591 194 ACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIG 273 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l 273 (482)
+++++.+++.+.+++++..+++. |++..+.+..|++++.++.++..+..+..+++++.|+++.+++.++++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~ 158 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL 158 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 5578889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hcC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cccCCCHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 011591 274 DVALCS-FLG-YGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAF---SFSVPSTNELATILGLAGPVFITMISKVAFYSL 348 (482)
Q Consensus 274 ~~~li~-~~~-~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~i 348 (482)
+++++. .++ +|+.|+++++.+++++..++.+++.+|+...+. ...+++++.+|+++++|.|..++++..++.+.+
T Consensus 159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~ 238 (342)
T TIGR00797 159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFAL 238 (342)
T ss_pred hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 999886 567 889999999999999999888777765332222 234667889999999999999999999999999
Q ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011591 349 IIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASV 428 (482)
Q Consensus 349 ~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 428 (482)
++.+++.+|++++++|+++.++.++..+++.+++++..|.++ +++|+ ||.+++++..++++++..+++++.++++.++
T Consensus 239 ~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (342)
T TIGR00797 239 LALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVG-QALGA-GDPKRAKEVARVALKLSLLLGLVLAIILILF 316 (342)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 48898 9999999999999999999999999999999
Q ss_pred hhhhhcccCCCHHHHHHHHHHHHH
Q 011591 429 PWFFPNIFTSDKSVIQEMHKVLIP 452 (482)
Q Consensus 429 ~~~i~~lf~~d~~~~~~~~~~l~~ 452 (482)
++++.++|++||++.++...++++
T Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~ 340 (342)
T TIGR00797 317 REFIARLFTNDPEVLELAAIYLIF 340 (342)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999888887765
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=292.19 Aligned_cols=372 Identities=19% Similarity=0.190 Sum_probs=346.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYL-TYVFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~-~~~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
+.|.|++++++.|+++..+.++..+++++.++||+|+.++|+.++++...+.. ..+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67789999999999999999999999999999999999999999999888875 45568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (482)
...+.+++..+....+++...+. .+.+++...+++ ||++.+.+..|.++..+..+.+........++|++++..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999875 577999999966 779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc-cccCCCHHHHHHHHHhhHHHHHH
Q 011591 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG-YNAF-SFSVPSTNELATILGLAGPVFIT 338 (482)
Q Consensus 261 ~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~ll~~~~p~~~~ 338 (482)
+......++|+++++++++.+++|..|++++..+++++...+...|..... ...+ .+... ++.+++++++++|.+++
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~m 259 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVM 259 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchhe
Confidence 999999999999999999999999999999999999999998888876543 1111 12222 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHH
Q 011591 339 MISKVAFYSLIIYFATSMG--TNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGST 416 (482)
Q Consensus 339 ~~~~~~~~~i~~~l~~~~g--~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 416 (482)
.+.|+|.+++..++.+.++ ..++++.++..++....++++.+++.++++++ +|.+|+ |+++++|...+.+...+..
T Consensus 260 iclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv-~neLGa-g~p~~ar~~~~v~~~~~~~ 337 (473)
T KOG1347|consen 260 ICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRV-SNELGA-GKPKRARVSAKVALQTSVA 337 (473)
T ss_pred eHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHcC-CChhhhhhHHHHHHHHHHH
Confidence 9999999999999999996 59999999999999999999999999999988 679999 9999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 417 LGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 417 ~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
++...++.+...++.+..+|++|+++.+.+.++.++..+..+.++.+.++.|+.+|.|++.+-
T Consensus 338 ~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g 400 (473)
T KOG1347|consen 338 IGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG 400 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence 999999999999999999999999999999999999999999999999999999999998653
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.7e-30 Score=269.32 Aligned_cols=367 Identities=12% Similarity=0.032 Sum_probs=309.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhh-hhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCHHHHHH
Q 011591 108 IVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVEL-AALGPGTVMCDYLTYVFM--FLSIATSNMVATSLARQDKNEVQH 183 (482)
Q Consensus 108 ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~-aa~~~a~~i~~~~~~~~~--~l~~a~~~~~s~~~g~~~~~~~~~ 183 (482)
++|.+.-.+++++++.+++++|..++++ +|++++ ++++++.++.+....+.. |++.+..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4677888899999999999999999999 899999 899999998877765543 57788777776554332 57777
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 011591 184 QISVLLFVGL-ACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKA 262 (482)
Q Consensus 184 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 262 (482)
.+..+..... +.+++..++.+++++++..++..+.|++..+.+..|++++.++.++..+..+.++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777666555 444455677778889998888433355777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHHH
Q 011591 263 LAVASAINGIGDVALCSFLGYGIAGAA--WATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMI 340 (482)
Q Consensus 263 ~i~~~~~~i~l~~~li~~~~~g~~G~a--~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~ 340 (482)
+++..+++++..+++ ..++|..|++ +++.+++.+..++.+++++|++.+.....+++++.+|++++++.|..++..
T Consensus 160 ~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 237 (502)
T TIGR01695 160 PILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSS 237 (502)
T ss_pred HHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHH
Confidence 999988877643333 3678999988 999999999988887777654422222234567889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 011591 341 SKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGL 419 (482)
Q Consensus 341 ~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~-~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 419 (482)
...+...+++.+.+.+|+.++++|+.+.++.++.. .+..+++++..|.+++ ++|+ ||++++|+..++++++...+++
T Consensus 238 ~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 315 (502)
T TIGR01695 238 ASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSR-HASE-GNWNELRDLLNQGIRLSLLLTI 315 (502)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999875 4678999999999965 8898 9999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCC----CHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCcccccc
Q 011591 420 VLGTIGASVPWFFPNIFTS----DKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQT 480 (482)
Q Consensus 420 ~~~i~~~~~~~~i~~lf~~----d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t 480 (482)
+.++++.++++++..+|.+ |++..+....+++++.+..++.+....+.+.+++.||++...
T Consensus 316 ~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~ 380 (502)
T TIGR01695 316 PSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPF 380 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCH
Confidence 9999999999999988865 567778899999999999999999999999999999998764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.97 E-value=5.2e-28 Score=251.25 Aligned_cols=360 Identities=14% Similarity=0.103 Sum_probs=303.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011591 109 VMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQHQIS 186 (482)
Q Consensus 109 l~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~~~~ 186 (482)
.+-+.|.++++++..+.+.+|+.+++| +|++++|+++.+..+..+...+. .|++.+..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 356899999999999999999999999 69999999999999988887776 6899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 011591 187 VLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVA 266 (482)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~ 266 (482)
.++.+.++.+++.+++++.+++++...+++ |++ ...+++++.+..++..+....++++|+.+|.+..+..++++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~----~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DER----SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--Chh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999998888889988877654 222 23578888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----hcCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc--c---cccCCCHHHHHHHHHhhHHHH
Q 011591 267 SAINGIGDVALCS-----FLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNA--F---SFSVPSTNELATILGLAGPVF 336 (482)
Q Consensus 267 ~~~~i~l~~~li~-----~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~ll~~~~p~~ 336 (482)
.++++.++..++. ..++|+.|+++++.+++++..++.+++++|+++.+ . ++.+.+++.+|+++++|.|..
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~ 235 (488)
T TIGR02900 156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLT 235 (488)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHH
Confidence 9998877655543 22467888999999999999888776655443211 1 122445778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----C---hH---HHHHH-HHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHH
Q 011591 337 ITMISKVAFYSLIIYFATSM----G---TN---TVAAH-QVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARM 405 (482)
Q Consensus 337 ~~~~~~~~~~~i~~~l~~~~----g---~~---~vaa~-~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~ 405 (482)
++++...+...+++.++++. | .. .++.| +++.++.++...+..+++++..|.++ +.+|+ ||++++++
T Consensus 236 l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s-~~~~~-~~~~~~~~ 313 (488)
T TIGR02900 236 LSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS-EAMAK-KNYSSIEK 313 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH-HHHHc-CCHHHHHH
Confidence 99999999999999888764 2 12 22333 35567777777888999999999995 48898 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCcccccc
Q 011591 406 LLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQT 480 (482)
Q Consensus 406 ~~~~~~~~~~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t 480 (482)
..++.+++...++.++++++.++++++..+|.++++ +...+++..+..++.+......+.+++.||++..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 384 (488)
T TIGR02900 314 RINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVAL 384 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 999999999999999999999999999988876554 45677888899999999999999999999988654
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=99.96 E-value=8e-26 Score=229.84 Aligned_cols=318 Identities=11% Similarity=-0.015 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 011591 108 IVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYV-FMFLSIATSNMVATSLARQDKNEVQHQI 185 (482)
Q Consensus 108 ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~-~~~l~~a~~~~~s~~~g~~~~~~~~~~~ 185 (482)
++|.+.......++..+.+++...++.| +|++++|.++....+..+...+ ..|++.+....++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4566777788888888888888888888 7999999999988888877766 477888888899987 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Q 011591 186 SVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAV 265 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~ 265 (482)
..++.+.+..+++++++.+.+.+++...+++++ + -..+..+..+..++..+.....+.+|+.|+++.++...++
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT--D----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998775432 2 2356666677677778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ccCCCHHHHHHHHHhhHHHHHHHHHHH
Q 011591 266 ASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFS--FSVPSTNELATILGLAGPVFITMISKV 343 (482)
Q Consensus 266 ~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~p~~~~~~~~~ 343 (482)
+.++|+.+ ++++.. ..|+.|+++|+.+++.+..+..+++++|++..+.+ ..+++++.+|+++++|.|..+++...+
T Consensus 155 ~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~ 232 (416)
T PRK15099 155 GSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP 232 (416)
T ss_pred HHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 444332 24999999999999999887776666554322221 235678899999999999999999999
Q ss_pred HHHHHHHHHHH-hhChHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011591 344 AFYSLIIYFAT-SMGTNTVAAHQVMIQTYGM-CSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVL 421 (482)
Q Consensus 344 ~~~~i~~~l~~-~~g~~~vaa~~i~~~i~~~-~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (482)
+...+++.+++ .+|++++++|+++.++.+. ...+..+++++.+|.++. + +|.++.++..++.......++.+.
T Consensus 233 i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~----~-~~~~~~~~~~~~~~~~~~~~~~~~ 307 (416)
T PRK15099 233 VAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSR----L-TEKRDITREIVKALKFVLPAVAAA 307 (416)
T ss_pred HHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 7899999999999999885 479999999999999954 2 678999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCCH
Q 011591 422 GTIGASVPWFFPNIFTSDK 440 (482)
Q Consensus 422 ~i~~~~~~~~i~~lf~~d~ 440 (482)
++++.++++++..+|.+|+
T Consensus 308 ~~~~~l~a~~ii~l~~g~~ 326 (416)
T PRK15099 308 SFTVWLLRDFAIWLLFSNK 326 (416)
T ss_pred HHHHHHHHHHHHHHhccHH
Confidence 9999999999999998776
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.96 E-value=1e-24 Score=219.26 Aligned_cols=374 Identities=11% Similarity=0.025 Sum_probs=321.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCh-hhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCHHHH
Q 011591 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSS-VELAALGPGTVMCDYLTYVF--MFLSIATSNMVATSLARQDKNEV 181 (482)
Q Consensus 106 k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~-~~~aa~~~a~~i~~~~~~~~--~~l~~a~~~~~s~~~g~~~~~~~ 181 (482)
.+++|.++-.....+++.+.+++...+++. +|. ...+++.++.++.+++.-+. .+++++..|...++..+++.|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 567777888888888889999996666666 886 55778999999999998887 56899999999999877777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011591 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPR-NVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (482)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (482)
++..+........+.+.++++..++++++.+...++. |++....+....+++.|+.++.++.....+.+|+.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 8888888778888888888899999999995553332 223333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHHH
Q 011591 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMI 340 (482)
Q Consensus 261 ~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~ 340 (482)
+..+..++.-+...+++.........+.+||+.++-+++.++.+..++|.+....+.+.++.+.+|++.+...|..++..
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~s 246 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVS 246 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999988877555554433222467889999999999999999999998754444445566899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHH
Q 011591 341 SKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGL 419 (482)
Q Consensus 341 ~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~-~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 419 (482)
..++...+++.+++.+++..++.++.+.+++++.. .+..+++++..|.+++ +..+ +|.+++++..++++++++++.+
T Consensus 247 isQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr-~~~~-~~~~~~~~~l~~~i~l~lll~l 324 (518)
T COG0728 247 ISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSR-HAAN-GDWPEFLKLLDWGLRLTLLLTL 324 (518)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhc-CChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 9999999999999976 6666 9999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccc-CC---CHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccccC
Q 011591 420 VLGTIGASVPWFFPNIF-TS---DKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQTR 481 (482)
Q Consensus 420 ~~~i~~~~~~~~i~~lf-~~---d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t~ 481 (482)
|.++++.++++++.++. .. +++....+.+.+..|.+++++..+..++...+++.+|++-+.+
T Consensus 325 P~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~ 390 (518)
T COG0728 325 PASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMK 390 (518)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChH
Confidence 99999999999999654 22 5777889999999999999999999999999999999986543
No 13
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.95 E-value=7.4e-25 Score=223.59 Aligned_cols=341 Identities=14% Similarity=0.071 Sum_probs=303.1
Q ss_pred cC-hhhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011591 136 GS-SVELAALGPGTVMCDYLTYVF--MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALT 212 (482)
Q Consensus 136 lg-~~~~aa~~~a~~i~~~~~~~~--~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
+| ..+..++.++.++.++...+. .+++.+..|...+.. ++++++.++..+..+.+..+..+.++++.+++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 445678999999999998665 358999999999998 88999999999999999999999999999999999999
Q ss_pred hccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcCCc---hHHHH
Q 011591 213 AFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYG---IAGAA 289 (482)
Q Consensus 213 ~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g---~~G~a 289 (482)
++..+.|++..+.+..+++++.+..++..+..++.+++|+++|...+....++.++..++..+++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 997666888999999999999999999999999999999999999999999998877666433333 3466 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Q 011591 290 WATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQ 369 (482)
Q Consensus 290 ~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~ 369 (482)
+|..++.+++.++.+...+|.+.+.....+...++.|++++...|..+.....+....+++.+++.+++..+++++.+.+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~ 241 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQR 241 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 99999999999999999888765533334556678999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccC----CCHHHHH
Q 011591 370 TYGMCS-VWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFT----SDKSVIQ 444 (482)
Q Consensus 370 i~~~~~-~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~lf~----~d~~~~~ 444 (482)
+.++.. .+..+++++..|.+++ ...+ ||.++.++..+++++....+.+|.++.+.++++++.++.. -|.+..+
T Consensus 242 l~~lp~~i~~~~i~tv~~P~ls~-~~~~-~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~ 319 (451)
T PF03023_consen 242 LYQLPLGIFAVSISTVVFPKLSR-LAAE-GDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQ 319 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHH
Confidence 999975 7788999999999976 6666 9999999999999999999999999999999999996553 2677789
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhheeeecCccccccC
Q 011591 445 EMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQTR 481 (482)
Q Consensus 445 ~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t~ 481 (482)
.+..++.++.+++++.++...+...+++.||.+.+.+
T Consensus 320 ~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~ 356 (451)
T PF03023_consen 320 LTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVR 356 (451)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHH
Confidence 9999999999999999999999999999999987654
No 14
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=3.7e-22 Score=205.17 Aligned_cols=210 Identities=16% Similarity=0.094 Sum_probs=194.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 101 IWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 101 ~~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
.++.+|+++++++|.+++++.+.....+|+.+++++|++++|+++++.++..+...+..|++.|..++++|++|+||+|+
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNV---HLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSL 257 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 257 (482)
+++..+.++.++.+.+++..++.+++++++.++|..++|+ |+.+.+..|+++.+++.++..++.++.++++|.|+++
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 9999999999999999999999999999999999532233 6889999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 258 GPLKALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 258 ~~~~~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
.+++.+++.. ++++++++++.+.+++|+.|+|+++.+++++..++....++++
T Consensus 391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 8999999999988889999999999999999888776666443
No 15
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=5e-21 Score=197.00 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 101 IWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 101 ~~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
.++.+|++++.++|.+++.........++..+++++|++++|+++++.++.++...+..|++.+.++.++|++|+||+++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (482)
+++..+.++.++..++++.+++++.+++++..+|. +|+|+.+.+..|+++..++.++.+++.+..++++|.||++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYT--DDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 99999999999999999999999999999999994 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011591 261 KALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG 311 (482)
Q Consensus 261 ~~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~ 311 (482)
+.++++. ++++++.+++...+++|+.|+|+|+.+++++..++.++++++.+
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 443 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 78999999988777899999999999999999998888776653
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=1.6e-20 Score=193.40 Aligned_cols=211 Identities=10% Similarity=0.083 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV 181 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~ 181 (482)
++.+|+++++++|..++.+...+...+.+.+++++|++++|+++++.++..+...+..|+++|.+++++|++|+||++++
T Consensus 255 ~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a 334 (478)
T PRK10189 255 FAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQA 334 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHH
Q 011591 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLK 261 (482)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 261 (482)
++..+.+..++.++++.++++.+++++++..+| .+|+|+.+.+..++++.++..++.+++.+..+.++|.||++.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lF--t~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFY--TQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 999999999999999999999999999999999 457899999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 011591 262 ALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNA 314 (482)
Q Consensus 262 ~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~ 314 (482)
.++++. ++.+++.+++....++|+.|+|++..+++.+..++.++.+++.+|++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 999887 67778888887667899999999999999999998888887776655
No 17
>PRK10459 colanic acid exporter; Provisional
Probab=99.88 E-value=3.7e-19 Score=185.05 Aligned_cols=348 Identities=11% Similarity=0.024 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHH
Q 011591 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQH 183 (482)
Q Consensus 106 k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~ 183 (482)
++..+-+....++++...+.+++...++.| +|+++.|.++.+..+..+...+. .|++.+.. |.. +++ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~~-~~~----~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QRQ-DIS----HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hcc-cCC----HH
Confidence 456666777888999999999998889999 79999999999999888777665 56766552 211 112 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHH
Q 011591 184 QISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKAL 263 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 263 (482)
.....+.+.+..++.+.++.+.+++++..+++.+ + ....+++..+..++..+.....+.++..++.+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNP---E----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh---h----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 3455666777777777777777788777766332 2 34567888888888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHHHHHH
Q 011591 264 AVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKV 343 (482)
Q Consensus 264 i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~ 343 (482)
+...++..+....+.. .++|+.+.+++..++..+..++.....++ +++ +..+.+++.+|++++++.|...+.+..+
T Consensus 149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYR--PALHFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCC--ccceecHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888777766655543 57899999999999998877655433322 222 1223467889999999999999999999
Q ss_pred HHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011591 344 AFYSLIIYFATSM-GTNTVAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVL 421 (482)
Q Consensus 344 ~~~~i~~~l~~~~-g~~~vaa~~i~~~i~~~~~-~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (482)
....+|+++++++ |+++++.|+.+.++.++.. .+...++.+..|.+++ . + +|.++.++..++.+.+...+++|+
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~-~--~-~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAK-I--Q-DDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-h--c-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998886 9999999999999998754 5555677788888854 2 4 789999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 422 GTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 422 ~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
++++.++++++..++.+|+. ..+...+.+..+..++..........+.+.||++..
T Consensus 301 ~~~l~~~a~~ii~ll~g~~~--~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEKW--NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHhHHHHHHhcChhH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 99999999999876655443 346677788888888888888888899999998764
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=1.8e-20 Score=191.38 Aligned_cols=212 Identities=18% Similarity=0.172 Sum_probs=197.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Q 011591 99 QSIWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDK 178 (482)
Q Consensus 99 ~~~~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~ 178 (482)
+..++.+|+++++++|..+++++......+-+.+++++|++.+|+++++.++.++..++..|++++++++++|++|+||+
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~ 313 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNY 313 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 33447779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 179 NEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
|++++..+.++.+++.+++...++++++++++..+|.. |+|+.+.+..++++..+..++.+.+.+..+++||.||++.
T Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~--~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~ 391 (455)
T COG0534 314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTT--DPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKI 391 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999954 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011591 259 PLKALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYN 313 (482)
Q Consensus 259 ~~~~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~ 313 (482)
+++.++++. .+.+++.+++.... +|..|+|++..+++.+..++..+++++++|+
T Consensus 392 ~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 392 PFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999987 55677778877655 9999999999999999999998888876553
No 19
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.85 E-value=2.7e-18 Score=179.02 Aligned_cols=235 Identities=14% Similarity=0.030 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTY-VFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~-~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
++.+|++++.+.|..++++...+...+|+.+.+++|++++++++.+.++..+... +..+++.+..|.++|++|+||+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3567999999999999999999999999998777899999999999999888765 457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPR--NVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
+++.+++++.....++++.+++++.+++++..++.+++ |+|....+..++++++++.++..+..+..+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 99999999999999999999999999999999887643 5678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHH
Q 011591 259 PLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFIT 338 (482)
Q Consensus 259 ~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~ 338 (482)
+++.++...++|++++++++ +.+|..|+++|+.+++.+..++..++++|+... ....+..+++.|...+..++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~as~~m 451 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLKG-----ILPFGVLKVLAKLVIASAII 451 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc-----CCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 458999999999999999998888777665211 12355667777777766666
Q ss_pred HHHHH
Q 011591 339 MISKV 343 (482)
Q Consensus 339 ~~~~~ 343 (482)
.....
T Consensus 452 ~~~~~ 456 (502)
T TIGR01695 452 GGVLY 456 (502)
T ss_pred HHHHH
Confidence 54443
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.85 E-value=2.2e-19 Score=184.26 Aligned_cols=206 Identities=13% Similarity=0.116 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSS-VELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~-~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
++.+|++++++.|..++.....+...+...+++++|+ +++|+++++.++..+...+..|++.+..++++|++|+||+|+
T Consensus 230 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~ 309 (453)
T PRK09575 230 WSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDN 309 (453)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHH
Confidence 4556999999999999999999999999999999985 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHH
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPL 260 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 260 (482)
+++..+.++.+++..+++..++++.+++++..+|.. +|||+.+.+..|+++..++.++.++..+..+++||.|+++.++
T Consensus 310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 388 (453)
T PRK09575 310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNS-GDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKAL 388 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999999999999999999999999999999999952 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 261 KALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 261 ~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
+.++...++++++.+++.. .+|+.|+|+++.+++++..++...+++++
T Consensus 389 ~~~~~~~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 389 FISIGNMLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHhHHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888877753 37999999999999999888777666553
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.82 E-value=2.3e-17 Score=171.08 Aligned_cols=354 Identities=13% Similarity=0.054 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHH
Q 011591 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQH 183 (482)
Q Consensus 106 k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~ 183 (482)
+++.+.+.....+++...+.+++....+.| +|+++.|.++.+..+..++..+. .|+..+....++++.+++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~ 85 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLIL 85 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHH
Confidence 677788888889999999999999999999 89999999999999999998888 7899999998988876665555555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Q 011591 184 Q-ISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKA 262 (482)
Q Consensus 184 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 262 (482)
. ........+..+++.........+. .+.....+++..+..+.........+++|+.++.+.....
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 86 LSVLLLLLLALILLLLLLLIAYLLAPI-------------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc-------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4 4444444444444333333221111 1225566788899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHh-hcccccccccCCCHHHHHHHHHhhHHHHHHHHH
Q 011591 263 LAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLN-NKGYNAFSFSVPSTNELATILGLAGPVFITMIS 341 (482)
Q Consensus 263 ~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~ 341 (482)
.+.. ..-......+. .....+..++..++..........+.. ++++......+..++.++++++.|.|..+....
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHH
Confidence 4444 11111111111 134455666666666666555554443 222222222233589999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 011591 342 KVAFYSLIIYFATSM-GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLV 420 (482)
Q Consensus 342 ~~~~~~i~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (482)
......+|+++++.+ |+++++.|+.+.++......+..+++.+..|.+++ .+.+ +|.++.++..++.+++..+++++
T Consensus 229 ~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~-~~~~-~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 229 NFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSR-AYAE-GDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHH-HHHc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 99999999999999999999999999999999976 7676 89999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCcccccc
Q 011591 421 LGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQT 480 (482)
Q Consensus 421 ~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t 480 (482)
..+++.++++++..++..++.. .....+.++.+...+.++.......+.+.|+++...
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 9999999999999877665543 166677778888888888888899999999887643
No 22
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.81 E-value=8.2e-17 Score=164.52 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNE 180 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~ 180 (482)
.++.|++++...|..++.....+...+|+.+.+++++.++++++.+.++..++..+. .++++...|..++...+||.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 345699999999999999999999999999999999999999999999999988665 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 181 VQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFT--GPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
.++.+++++...+.+.+|.++.++.++++++++++ +.-|+|..+.....+++++++.++.+++..+...+.++||+|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 99999999999999999999999999999999875 4456778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011591 259 PLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKG 311 (482)
Q Consensus 259 ~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~ 311 (482)
+++.++++.++|+++++++. +.+|..|.++|+.++.++..++.+.+++|+.
T Consensus 354 ~~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999997776 5789999999999999999999988887764
No 23
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.79 E-value=2.3e-17 Score=168.38 Aligned_cols=200 Identities=10% Similarity=0.003 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 011591 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQ 182 (482)
Q Consensus 103 ~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~ 182 (482)
+.+|++++.+.|..+++.+......+-+.+++++|++++|+++++.++..+...+..|+++|.+++++|++|+||+|+++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~ 308 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL 308 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---chhH
Q 011591 183 HQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKD---SLGP 259 (482)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~ 259 (482)
+..+.+..+...++++++++++.+++++..+| ++|+|+.+.+..++++..+..+......+..+.++|.+| ++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lF--t~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 309 DVWRAACRQSGIVALLFSLVYALAGEHIIALL--TSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99999999999999999999999999999999 458899999999999988764433344455555555555 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 260 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
++.++++..+ .++.. +.+|..|+|++..+++.+..++..++++++
T Consensus 387 ~~~~~~~~~~----~~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 387 MAVAAAGFAL----TLLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred HHHHHHHHHH----HHHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887543 11111 357999999999999999998888776655
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=6e-19 Score=155.10 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 011591 114 PATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEVQHQISVLLFVGL 193 (482)
Q Consensus 114 p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 193 (482)
|.++++++..+.+.+|+.+++++|++++++++++..+.++...+..|++.|+.+.++|++|++|+|++++.+++++.+.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH-HHHHH
Q 011591 194 ACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVAS-AINGI 272 (482)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~ 272 (482)
.+++++.++.+.+.+++..+++. |+|+.+.+..|+++..++.++..+..+..+++++.|+++.+++.++++. +++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999954 6689999999999999999999999999999999999999999999999 99999
Q ss_pred HHHH
Q 011591 273 GDVA 276 (482)
Q Consensus 273 l~~~ 276 (482)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 25
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.76 E-value=5.7e-15 Score=149.16 Aligned_cols=240 Identities=16% Similarity=0.046 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHH
Q 011591 103 SQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEV 181 (482)
Q Consensus 103 ~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~ 181 (482)
++.|++.+...|++++...+++..++|+.+.+.+.+.+++.+.++.++..++..+. .++++..-|..||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 56799999999999999999999999999999999999999999999999998666 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011591 182 QHQISVLLFVGLACGFLMLLFTRFFGSWALTAFT--GPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (482)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (482)
++..++++.++++..+|.++.+..+++++.+.++ +.-+++........+..++.+.++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999999999999999999998874 33356778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHH
Q 011591 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITM 339 (482)
Q Consensus 260 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~ 339 (482)
+++.+++.++|+.+++.+. +.+|..|.++++.++.+++..++++.++|+..... ...+.... ..|..+-..++.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~---~~~~~~~~-~~k~~l~~~i~~ 462 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP---GRGWGLFL-ILKLLLASAIMA 462 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cchhhHHH-HHHHHHHHHHHH
Confidence 9999999999999996666 56778889999999999999988888877643211 44566556 677777777766
Q ss_pred HHHHHHHHH
Q 011591 340 ISKVAFYSL 348 (482)
Q Consensus 340 ~~~~~~~~i 348 (482)
...+.....
T Consensus 463 ~~~~~~~~~ 471 (518)
T COG0728 463 AALLALLHL 471 (518)
T ss_pred HHHHHHHHH
Confidence 655554433
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.76 E-value=2.9e-16 Score=163.21 Aligned_cols=203 Identities=14% Similarity=0.191 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-Ch------hhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQG-SS------VELAAL----GPGTVMCDYLTYVFMFLSIATSNMVA 170 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~l-g~------~~~aa~----~~a~~i~~~~~~~~~~l~~a~~~~~s 170 (482)
++.+|+++++++|.+++++...+.+.+|+.+++++ ++ ++.+.+ +++.++..+...+..+++.+..|.++
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999883 22 122222 34556667777677899999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011591 171 TSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSAS 250 (482)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l 250 (482)
+++|+||+++.++..++.+.+...++++..+.+..+++++..++.+.+ .+..++++++++.++..+..+..+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~------~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP------DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999886422 26789999999999999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 251 LGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 251 ~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
++.||+|.+++.++...++|++++++++..+.+|+.|+++|+.+++++..++.+++.+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888755679999999999999999999888877664
No 27
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.71 E-value=7.5e-14 Score=133.15 Aligned_cols=267 Identities=16% Similarity=0.105 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 011591 109 VMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQHQIS 186 (482)
Q Consensus 109 l~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~~~~ 186 (482)
+|.+.-....++...+.+++...++.| +|+++.|.++....+..+...+. .|++.+.....++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 455667778888888888888888988 79999999999999988887774 78888888888876433 345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 011591 187 VLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVA 266 (482)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~ 266 (482)
......++.+++...+.. +...++.++ . ...+........++.........++++.++.+......+..
T Consensus 80 ~~~~~~~~~~~i~~~~~~-----~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL-----IASFFGNPS---L---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHcCCch---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444333332 222443221 1 11222222222257788888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011591 267 SAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFY 346 (482)
Q Consensus 267 ~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~ 346 (482)
.++..++...++. .+.+..+..++..++..+..++...+.+|+.+ .++...+++..|++++.+.|..+..+..++..
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655554 34458899999999999988888888776543 34445568999999999999999999999999
Q ss_pred HHHHHHHHhh-ChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh
Q 011591 347 SLIIYFATSM-GTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPE 391 (482)
Q Consensus 347 ~i~~~l~~~~-g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~ 391 (482)
.+|.++++.+ |++++|.|+++.++.+....+..++.++..|.+++
T Consensus 226 ~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~ 271 (273)
T PF01943_consen 226 QIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSR 271 (273)
T ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 99999999999999999999999999999998854
No 28
>PRK15099 O-antigen translocase; Provisional
Probab=99.67 E-value=2.2e-14 Score=146.01 Aligned_cols=199 Identities=12% Similarity=-0.039 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccChhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIG-QGSSVELAALGPGTVMCDYL-TYVFMFLSIATSNMVATSLARQDKN 179 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~-~lg~~~~aa~~~a~~i~~~~-~~~~~~l~~a~~~~~s~~~g~~~~~ 179 (482)
++.+|++++++.|..++++...+...+|+.+++ ++|++++|.|+.+.++.... ..+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 455699999999999999999999999999997 69999999999999998854 777899999999999995 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011591 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (482)
+.++.+++.......++++.+++.++++++++.++.+++ ++.+..++++++++.++...+......+.+.++.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999899999999997643 5567889999999998888888777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011591 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNN 309 (482)
Q Consensus 260 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~ 309 (482)
....+...+++++++++++ +.+|..|+++++.+++.+...+......+
T Consensus 364 ~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999887 56899999999999999998876655443
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.66 E-value=4.3e-13 Score=139.57 Aligned_cols=201 Identities=15% Similarity=0.036 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKN 179 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~ 179 (482)
++..|++++++.|.+.+++...++..+|+.++|+ +|++++|.|+.+.++........ ..++....|..++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3567999999999999999999999999999999 69999999999999988765554 45777888988885 67889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011591 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (482)
+.++.+++...+...+++|+.+.+..++++++.++++++ +..+...+++++++..+..........+++.|++|..
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 999999999999999999999999999999998887643 6778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 260 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
++.+++..+++++..+.+. ..+|..|+++|+.+++.+.....+++.+|+
T Consensus 357 ~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887666554 457999999999999999888888777443
No 30
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.64 E-value=3.1e-13 Score=140.23 Aligned_cols=188 Identities=19% Similarity=0.148 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Q 011591 101 IWSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKN 179 (482)
Q Consensus 101 ~~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 179 (482)
..+.+|++++.++|..++.+...+.+.+|+.++++ +|++++|.|+.+..+......+...++....|..++.+.++|.+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 35667999999999999999999999999999999 69999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011591 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (482)
+.++..++++.....++++..+.+..+++++..++++++ ...+...+.+++++.++..+.......+++.|+.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~ 363 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLL 363 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 999999999999999999999999999999999887754 3338889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 011591 260 LKALAVASAINGIGDVALCSFLGYGIAGAAWATMVS 295 (482)
Q Consensus 260 ~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is 295 (482)
++.+.++.++|.+++++++ +.+|..|+++++ .+
T Consensus 364 ~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 364 LLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 9999999999999999988 567889999998 44
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.54 E-value=4.1e-15 Score=130.59 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHH
Q 011591 334 PVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLI 413 (482)
Q Consensus 334 p~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 413 (482)
|..++++.+...+.+++.+++++|++++++++++.++.++...+..+++++..+.++ +++|+ ||++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s-~~~G~-~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILIS-QNIGA-GDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCS-SSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceee-ccccc-cccccccccccccccc
Confidence 889999999999999999999999999999999999999999999999999999995 59999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCcccccc
Q 011591 414 GSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQT 480 (482)
Q Consensus 414 ~~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~t 480 (482)
+.++++++++++.++++++..+|++|+++.+.+.+++++..+..++.++....++.++|.||+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 145 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAM 145 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988653
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.54 E-value=3.6e-11 Score=113.29 Aligned_cols=243 Identities=12% Similarity=0.045 Sum_probs=177.7
Q ss_pred HHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011591 125 MSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLF 202 (482)
Q Consensus 125 ~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (482)
.+++-..+++| +|+++.|.++....+..+...+. .|+..... + ..++++++.++..+.......+.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667888 79999999999998888777664 45544443 3 234667777777777666555555444433
Q ss_pred HHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 011591 203 TRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLG 282 (482)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~ 282 (482)
. ..+..+++. + ....++.+..+..++.......++.+++.++.+......++..++...+...+.. .+
T Consensus 78 ~----~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 145 (251)
T PF13440_consen 78 A----ILIAYFFGD-P------ELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LG 145 (251)
T ss_pred H----HHHHHHhCC-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 2 223334422 1 1345666777888889999999999999999999999999998887554444443 33
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-hChHHH
Q 011591 283 YGIAGAAWATMVSQVVSAYMMIQSLNNKGYNAFSFSVPSTNELATILGLAGPVFITMISKVAFYSLIIYFATS-MGTNTV 361 (482)
Q Consensus 283 ~g~~G~a~a~~is~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~p~~~~~~~~~~~~~i~~~l~~~-~g~~~v 361 (482)
.+..+..++..++.++..+......+++. +. +++.+..| ..+.+.|..+..+..+....++.++++. +|++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 146 LNLWSILLAFIISALLALLISFYLLRRKL----RL-SFKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc----CC-CchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 48888999988888887776665433221 11 11333334 7999999999999999999999999999 699999
Q ss_pred HHHHHHHHHHHHHh-hhhhHHHHHHHHhhh
Q 011591 362 AAHQVMIQTYGMCS-VWGEPLSQTAQSFMP 390 (482)
Q Consensus 362 aa~~i~~~i~~~~~-~~~~~i~~a~~~~~~ 390 (482)
|.|+++.++..... .+..++++...|.++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~la 249 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLA 249 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887 999999999888875
No 33
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.27 E-value=1e-10 Score=115.70 Aligned_cols=144 Identities=16% Similarity=0.068 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHH
Q 011591 334 PVFITMISKVAFYSLIIYFATSMGTNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLI 413 (482)
Q Consensus 334 p~~~~~~~~~~~~~i~~~l~~~~g~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 413 (482)
|.+++++.......+++.+++++|++++++++++.++..+...+..+++++..|.++ +.+|+ +|++++++..+.++.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s-~~~g~-~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVA-QAVGA-GNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH-HHHCC-CChHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999995 48898 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccccc
Q 011591 414 GSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPVFQ 479 (482)
Q Consensus 414 ~~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~~~ 479 (482)
...++++.++++.++++++..+|+.|++..+.+.+.+++..+..++.+...+..+.+++.||....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTP 144 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 999999999999999999999998888888899999999999999999999999999999998654
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.96 E-value=1.1e-09 Score=111.59 Aligned_cols=207 Identities=12% Similarity=0.012 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGS--SVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKN 179 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg--~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~ 179 (482)
.+.+++++++++|..+.-.++..+..+-....|.++ ..++++.++...+.....++..+++.++++.++..+|+++++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 566789999999999999999999999999999987 478899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 011591 180 EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGP 259 (482)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 259 (482)
++|............+++..+.....+.+.+...| .+|+|+.+...+..+++++..++...+.+.++..+|.|..+..
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~if--t~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~g 400 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIF--TNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIG 400 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccce
Confidence 99999999999999999999999988999999999 4577999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 260 LKALAVAS-AINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 260 ~~~~i~~~-~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
+++++... ++.+++..++.+..++|..|.|++...+..++.........+.
T Consensus 401 a~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~t 452 (473)
T KOG1347|consen 401 AVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTART 452 (473)
T ss_pred EEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeec
Confidence 99988876 6666666666667789999999999999666666665555443
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.88 E-value=1.2e-05 Score=75.32 Aligned_cols=306 Identities=13% Similarity=0.045 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 011591 105 MKEIVMFTGPATGLWLCGPLMSLIDTAVIGQGS---SVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQDKNEV 181 (482)
Q Consensus 105 ~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~lg---~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~~~~~ 181 (482)
.+.+.++-+|..++.+...+...+-+.-+++-. .+.+|+||++..+.-++..+...+-.....++ +++++
T Consensus 10 y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V-----~s~rs-- 82 (345)
T PF07260_consen 10 YWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV-----NSKRS-- 82 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh-----cchhh--
Confidence 478999999999999999998888777777632 35599999999998888888776665554444 33332
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHH-HHhHHHHHH-hccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 182 QHQISVLLFVGLACG-FLMLLFT-RFFGSWALT-AFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~-~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
++....++.+...+. .+..++. -..+..++. .++. +|++.+.+...+.++.+-.++.++....++++.=++++..
T Consensus 83 rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgV--s~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 83 RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGV--SPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 222222222222222 1212222 223344443 4443 6699999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCchHHHH---HHHHHHHHHHH-HHHHHHH---hhcccccccccCCCHHHHHHHHHh
Q 011591 259 PLKALAVASAINGIGDVALCSFLGYGIAGAA---WATMVSQVVSA-YMMIQSL---NNKGYNAFSFSVPSTNELATILGL 331 (482)
Q Consensus 259 ~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a---~a~~is~~i~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~ 331 (482)
....++...+..+++...++...--....++ +|...+..+-+ .+.+.|+ +.+........+.+...+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 7777776666655544445421100111111 12222222211 1112222 222211222334466789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--C----hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhccCCCHHHHH-
Q 011591 332 AGPVFITMISKVAFYSLIIYFATSM--G----TNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGVNRSLVKAR- 404 (482)
Q Consensus 332 ~~p~~~~~~~~~~~~~i~~~l~~~~--g----~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~~~~~~~~~- 404 (482)
..|.+.........--+.+.+++|. | ++++|...+.+...-+. .+..+-.-...+. .-.+++.++.+
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~----y~w~~~~r~~~pa--f~~~~~~~~~~~ 314 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMP----YGWLTELRAVYPA--FDKNNPQNKLRN 314 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCc----chhHHhHHhhCch--hhccCccccccc
Confidence 9999999999999999999999884 3 35666666555544333 3333333333321 11112333332
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Q 011591 405 -------MLLKSLLLIGSTLGLVLGTIG 425 (482)
Q Consensus 405 -------~~~~~~~~~~~~~~~~~~i~~ 425 (482)
..+++......++.+.++..+
T Consensus 315 ~~~~v~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 315 CGNPVTQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245555555555555555544
No 36
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.70 E-value=2.4e-06 Score=73.28 Aligned_cols=80 Identities=25% Similarity=0.196 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011591 230 VQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNN 309 (482)
Q Consensus 230 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~ 309 (482)
+++++++.++..+....+..+++.||+|..++.++++.++|+++++.++ +++|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999996 68999999999999999999988888877
Q ss_pred cc
Q 011591 310 KG 311 (482)
Q Consensus 310 ~~ 311 (482)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 63
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.37 E-value=5.8e-05 Score=78.50 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--c-ChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC----
Q 011591 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ--G-SSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQD---- 177 (482)
Q Consensus 106 k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~--l-g~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~---- 177 (482)
+++++++...+.+.++-.+.+--|.+++.. + ..++.|.|++++++.+++.-+. .-+--..-...++...+++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 788999999999999999999999999999 4 6888999999999999887665 4577777777777765432
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011591 178 -----KNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLG 252 (482)
Q Consensus 178 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~ 252 (482)
.++..+.+...+.+...+|+++.......++.++.++++++ -....+...+++++.++|+.++|.+..+++++
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~--w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR--WSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc--ccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 24577788888888888888888888888888888887653 33344678899999999999999999999999
Q ss_pred cCCchhHHHHHH---HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 253 MKDSLGPLKALA---VASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 253 ~g~~~~~~~~~i---~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
....+.....+- +..++.+..+++|... ++|..|..+|..+...+-.+..+.++++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766654443 4456667778888866 79999999999999999999888888664
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.13 E-value=0.00033 Score=72.97 Aligned_cols=149 Identities=14% Similarity=0.146 Sum_probs=109.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--h-ChHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhhhhhhccCC---
Q 011591 326 ATILGLAGPVFITMISKVAFYSLIIYFATS--M-GTNTVAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPELIYGVNR--- 398 (482)
Q Consensus 326 ~~ll~~~~p~~~~~~~~~~~~~i~~~l~~~--~-g~~~vaa~~i~~~i~~~~~-~~~~~i~~a~~~~~~~~~~g~~~--- 398 (482)
++++++......+.+...+..+-+.++++. + ..++-+.|.+++|..++.. .+...+--+.....++ ...+++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk-~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK-LLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH-HhcccCchh
Confidence 788899999999999999999999988887 4 6899999999999999875 6666677777666754 333311
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeec
Q 011591 399 -----SLVKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVC 473 (482)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~ 473 (482)
+.+++.+.....+++...+++++........+.+..++..+.-.......+++.|++.+++.+++++.+....+.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 234566677777777777777776666666666666665433222334778888888888888888888766654
Q ss_pred Cc
Q 011591 474 LM 475 (482)
Q Consensus 474 g~ 475 (482)
.+
T Consensus 412 a~ 413 (549)
T PF04506_consen 412 AS 413 (549)
T ss_pred CC
Confidence 43
No 39
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=0.003 Score=62.18 Aligned_cols=353 Identities=12% Similarity=0.013 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Q 011591 112 TGPATGLWLCGPLM-SLIDTAVIGQGSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATSLARQD---KNEVQHQISV 187 (482)
Q Consensus 112 ~~p~~l~~~~~~~~-~~v~~~~i~~lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~~g~~~---~~~~~~~~~~ 187 (482)
+.-.+..+++..+. ..++++.+.+++++.+|..++-..+..-.. ..++.-.........|..+ ..+..+..+.
T Consensus 14 a~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTi---LFlsREair~A~l~~gs~~~d~~te~~n~~wl 90 (530)
T KOG2864|consen 14 AVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTI---LFLSREAIRLAELRIGSEPADTWTEFINLLWL 90 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHH---HHhhHHHHHHHhccCCCCCCccHHHHHHhhhh
Confidence 33344445555554 444667777789998777765544433222 2233323333333333322 4455555554
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 011591 188 LLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVH-LVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLGPLKALAVA 266 (482)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~ 266 (482)
+--+..+..+++.-+.+- +.... |+- ..+.-..-..+...+...-.+...+.-..|..-+.+.-....-+.
T Consensus 91 S~~L~~~i~~~~i~~wl~----~~~s~----d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~ 162 (530)
T KOG2864|consen 91 SVPLQTAINVACIYFWLG----FLSSS----DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLA 162 (530)
T ss_pred hhhHHHHHHHHHHHHHHH----Hhhcc----chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHH
Confidence 444444444443332221 11111 111 112222333333444443344444444444444445555555555
Q ss_pred HHHHHHHHHH-HHhh-cCCchHHHHHHHHHHHHHHHHH-HHHHHhhccccc-----------ccc--cCCCH-HHHHHHH
Q 011591 267 SAINGIGDVA-LCSF-LGYGIAGAAWATMVSQVVSAYM-MIQSLNNKGYNA-----------FSF--SVPST-NELATIL 329 (482)
Q Consensus 267 ~~~~i~l~~~-li~~-~~~g~~G~a~a~~is~~i~~~~-~~~~~~~~~~~~-----------~~~--~~~~~-~~~~~ll 329 (482)
.++.....+. ++.. ..+++.--|+|.....+.-.+. .+.|++.++..+ .+. .+++. ..=++.+
T Consensus 163 ~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~ 242 (530)
T KOG2864|consen 163 TIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLL 242 (530)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccccHHHH
Confidence 5555332222 2222 2345555566655444433332 233333333000 000 01000 1123455
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhhhhhhccCCCHHHHHH
Q 011591 330 GLAGPVFITMISKVAFYSLIIYFATSM---GTNTVAAHQVMIQTYGMCS-VWGEPLSQTAQSFMPELIYGVNRSLVKARM 405 (482)
Q Consensus 330 ~~~~p~~~~~~~~~~~~~i~~~l~~~~---g~~~vaa~~i~~~i~~~~~-~~~~~i~~a~~~~~~~~~~g~~~~~~~~~~ 405 (482)
+.-....-+.+..++..+-+..+++.. .-.+-|.|.++.|..++.. ++...+--....+.++ ...+ ++.|+.|+
T Consensus 243 ~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~-~ls~-~~qe~~k~ 320 (530)
T KOG2864|consen 243 KLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFAR-LLSR-DNQENVKK 320 (530)
T ss_pred HHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHH-Hhhc-cchhhHHH
Confidence 555566677777888877777666533 4456778888888888765 6666677776666644 4444 44554444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecCccc
Q 011591 406 ---LLKSLLLIGSTLGLVLGTIGASVPWFFPNIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCLMPV 477 (482)
Q Consensus 406 ---~~~~~~~~~~~~~~~~~i~~~~~~~~i~~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g~~~ 477 (482)
...+.+++...+++...+...-..+....++..+.-...-....+++|++.+.+.+.+++.++.+.+.++.+
T Consensus 321 a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 321 AVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 556666777766666655555556666666655432222344788899999999999999988877766543
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.0032 Score=62.04 Aligned_cols=201 Identities=13% Similarity=0.125 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHH--
Q 011591 106 KEIVMFTGPATGLWLCGPLMSLIDTAVIGQ---GSSVELAALGPGTVMCDYLTYVF-MFLSIATSNMVATSLARQDKN-- 179 (482)
Q Consensus 106 k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~---lg~~~~aa~~~a~~i~~~~~~~~-~~l~~a~~~~~s~~~g~~~~~-- 179 (482)
++..+...-..-+.++-.+.+==|.+++.. +.-++.|.|.+..+..++..-+. --+--......+|...+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 566777777777777777777778888874 35567788888888888776554 446666777777777665544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 180 -EVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
++..++...+.+...+|+.........++.++.+++|+. -....+...+++++.++|+.+++.+..+++.+.+..+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~k--wss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSK--WSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCcc--ccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 455566677777777777666666666777888887753 33334668899999999999999999999998877666
Q ss_pred HHHH---HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011591 259 PLKA---LAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNNK 310 (482)
Q Consensus 259 ~~~~---~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~~ 310 (482)
.... ..+..++..+++++++.+ +|..|..+|..+...+-.+....++++.
T Consensus 397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5533 345567778888988854 5669999999998888888777777654
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.01 E-value=0.0045 Score=58.50 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011591 102 WSQMKEIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLTYVFMFLSIATSNMVATS 172 (482)
Q Consensus 102 ~~~~k~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~~~~~~l~~a~~~~~s~~ 172 (482)
++..|++++.+.|..++.+...+....|..++++ .|++++|.|+.+.++......+...+.+...|.++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677999999999999999999999999999999 6999999999999999999999999999999999875
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.50 E-value=0.17 Score=48.04 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-h-C-hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhcc
Q 011591 320 PSTNELATILGLAGPVFITMISKVAFYSLIIYFATS-M-G-TNTVAAHQVMIQTYGMCSVWGEPLSQTAQSFMPELIYGV 396 (482)
Q Consensus 320 ~~~~~~~~ll~~~~p~~~~~~~~~~~~~i~~~l~~~-~-g-~~~vaa~~i~~~i~~~~~~~~~~i~~a~~~~~~~~~~g~ 396 (482)
+.....++++++-+|.+++.....+.-.+.+--+.+ - . .+.+|+|+++..+.-++..+...+-.+...++ .
T Consensus 5 ~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V------~ 78 (345)
T PF07260_consen 5 PSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV------N 78 (345)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh------c
Confidence 345678899999999999999999998888866655 3 2 36699999999999888888777777665444 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-cccCCCHHHHHHHHHHHHHHHHHHHHhhhhHhhhheeeecC
Q 011591 397 NRSLVKARMLLKSLLLIGSTLGLV-LGTIGASVPWFFP-NIFTSDKSVIQEMHKVLIPYILAIVVSPSTHSLEGTLLVCL 474 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~i~-~lf~~d~~~~~~~~~~l~~~~l~~~~~~~~~~~~g~~~~~g 474 (482)
++.++ ++........+.+..+. ..+...-+.+++. .++.-||++.+.+...+.+..+.-.++++....+|++.=.+
T Consensus 79 -s~rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 79 -SKRSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred -chhhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 22222 12222222111111111 2222233344444 67788999999999999988888899999999999886444
Q ss_pred cc
Q 011591 475 MP 476 (482)
Q Consensus 475 ~~ 476 (482)
+.
T Consensus 157 ~s 158 (345)
T PF07260_consen 157 HS 158 (345)
T ss_pred ce
Confidence 33
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.28 E-value=1.2 Score=43.31 Aligned_cols=133 Identities=5% Similarity=0.006 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHH
Q 011591 159 MFLSIATSNMVATSLARQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWP 238 (482)
Q Consensus 159 ~~l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~ 238 (482)
.|+....+..+|...=+|+.+++..-+.-...+....+..+..+. .... + +. ...|=......+.
T Consensus 78 gg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~--~-~~-----si~yk~l~~~~FV 142 (467)
T COG4267 78 GGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVN--N-QY-----SIVYKILACALFV 142 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhc--C-ch-----hHHHHHHHHHHHH
Confidence 567777778888877777777776655555444444443333211 1111 1 11 1222223344555
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011591 239 AVLVGLVAQSASLGMKDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAYMMIQSLNN 309 (482)
Q Consensus 239 ~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~~~~~~~~~ 309 (482)
..+.......++.++++.+...+.-.++.++.+.+..++- +.++.|.-++..++..+...+...++.|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6677778888999999999999999999888888877764 5689999999999999888877777655
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=95.25 E-value=0.11 Score=48.38 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cChhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 011591 107 EIVMFTGPATGLWLCGPLMSLIDTAVIGQ-GSSVELAALGPGTVMCDYLT-YVFMFLSIATSNMVAT 171 (482)
Q Consensus 107 ~ll~~~~p~~l~~~~~~~~~~v~~~~i~~-lg~~~~aa~~~a~~i~~~~~-~~~~~l~~a~~~~~s~ 171 (482)
+.++.+.|..+..+........|..+++. +|++++|.|+.+.++..... .+..+++....|..+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999 89999999999999999887 7788999999998876
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.29 E-value=36 Score=33.58 Aligned_cols=95 Identities=12% Similarity=-0.027 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 011591 179 NEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPRNVHLVPAANTYVQIRSFAWPAVLVGLVAQSASLGMKDSLG 258 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 258 (482)
+++...+++.+.-..-+-...++.+...++.+..+++- .+.-.+.+++-..+..+......+-...--.++.+.
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~l------S~~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i 393 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGL------SEYYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRI 393 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555555555555555666667788999999954 233445555556665555555554444555677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 011591 259 PLKALAVASAINGIGDVALCS 279 (482)
Q Consensus 259 ~~~~~i~~~~~~i~l~~~li~ 279 (482)
.+..+..-.+.|.++++++..
T Consensus 394 ~l~~t~~fli~N~ilT~i~l~ 414 (467)
T COG4267 394 ALELTALFLISNGILTFIFLE 414 (467)
T ss_pred hhhhhhHHHHHhHHHHHHHHH
Confidence 888888888889998888764
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=74.31 E-value=13 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHhhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011591 377 WGEPLSQTAQSFMPELIYGVNRSLVKARMLLKSLLLIGSTLGLVLGTIG 425 (482)
Q Consensus 377 ~~~~i~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 425 (482)
++.|+.....+.-+...+.+ ||+++|++..+++.+++. +++.+++++
T Consensus 31 ~PlGi~Ai~~s~kv~~~~~~-Gd~~~A~~aS~~Ak~~~~-ia~~~g~~~ 77 (82)
T PF04505_consen 31 WPLGIVAIVYSSKVRSRYAA-GDYEGARRASRKAKKWSI-IAIIIGIVI 77 (82)
T ss_pred hhHHHHHheechhhHHHHHC-CCHHHHHHHHHHhHHHHH-HHHHHHHHH
Confidence 34555544444444556667 999999999999887774 344444433
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=66.85 E-value=1.5e+02 Score=29.84 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011591 177 DKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALT 212 (482)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (482)
+.++.+++++++...+........++.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999988877777777667665
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.68 E-value=63 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011591 284 GIAGAAWATMVSQVVSAYMMIQSLNNKG 311 (482)
Q Consensus 284 g~~G~a~a~~is~~i~~~~~~~~~~~~~ 311 (482)
-+.|+.+|.+.+-+...++..++++|++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666655555554444455555543
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=31.80 E-value=2.2e+02 Score=21.36 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 011591 161 LSIATSNMVATSLARQDKNEVQHQISVLLFVGLAC 195 (482)
Q Consensus 161 l~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~ 195 (482)
++.-.+..+-..+.+||++++++.-+++..++.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia 70 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIA 70 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHH
Confidence 44445556777888999999998888887766543
No 50
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=27.48 E-value=6.3e+02 Score=25.18 Aligned_cols=36 Identities=11% Similarity=-0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 011591 401 VKARMLLKSLLLIGSTLGLVLGTIGASVPWFFPNIF 436 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~lf 436 (482)
.-+|+....--+..+..+..++.++.+..|.+.+.+
T Consensus 301 HiaR~l~g~~~r~llp~S~L~Ga~lLl~aD~iaR~~ 336 (366)
T PRK09535 301 HVMRLLVGPDHRILLPTSALAGASFLVATDTVARSG 336 (366)
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHccC
Confidence 334444433334444556667777888888888875
No 51
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.25 E-value=3.2e+02 Score=25.00 Aligned_cols=38 Identities=16% Similarity=-0.008 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 011591 177 DKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFT 215 (482)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (482)
+++.....+..++...+++-+++++++ .++.++..+|+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvm-t~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVM-TIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhcccchhhhh
Confidence 444555555555554444444444443 45556667765
No 52
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.73 E-value=9.7e+02 Score=25.73 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCHH
Q 011591 411 LLIGSTLGLVLGTIGASVPWFFPNIFTSDKS 441 (482)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~~~i~~lf~~d~~ 441 (482)
+...++.+....-...+.+..+..+|++|+.
T Consensus 316 lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~ 346 (599)
T PF06609_consen 316 LVISFISGMNFFSVNILWPQQVVNVFGSDPI 346 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 3444444444444557778888889988874
No 53
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=22.14 E-value=5.3e+02 Score=22.45 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 011591 167 NMVATSLARQDKNEVQ--HQISVLLFVGLACGFLMLLFTRFFGSWALTAFTG 216 (482)
Q Consensus 167 ~~~s~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (482)
..+||.+|.+.+-.++ .-++....++......+++...+|++.+......
T Consensus 33 SKISQlLGne~k~~vr~P~GLr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~ 84 (179)
T PF14936_consen 33 SKISQLLGNEIKFAVREPRGLRLWQFLSAVYFTLVALMALVFPDQLYDHVFE 84 (179)
T ss_pred HHHHHHhcccceeeecCCCchhHHHHHHHHHHHHHHHHHHHccHHHHHhhcc
Confidence 4567777754331111 1111122223333334555566788887776644
No 54
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=21.38 E-value=5.1e+02 Score=21.99 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011591 177 DKNEVQHQISVLLFVGLACGFLMLLFTR 204 (482)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (482)
+.++-++..++...+.+.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777666543
Done!