Query 011591
Match_columns 482
No_of_seqs 288 out of 2569
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 11:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011591.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011591hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 27.5 1.6E+02 0.012 24.5 12.4 7 283-289 376-382 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 22.0 2.2E+02 0.016 24.2 18.5 26 282-307 406-431 (447)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 12.2 2.1E+02 0.015 19.3 9.0 26 320-345 65-90 (100)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.9 4.2E+02 0.03 17.9 8.9 26 320-345 71-96 (107)
5 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.6 9.5E+02 0.069 19.1 13.0 64 238-301 90-154 (261)
6 d1neea2 g.59.1.1 (A:99-135) Zi 2.6 2.1E+02 0.015 15.7 0.5 16 50-65 3-18 (37)
7 d1v54b2 f.17.2.1 (B:1-90) Mito 2.5 7.7E+02 0.056 15.8 6.1 24 441-464 59-82 (90)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 2.0 6.3E+02 0.046 13.5 2.8 17 443-459 6-22 (37)
9 d2d5ba1 a.27.1.1 (A:349-500) M 2.0 1.1E+03 0.078 16.3 4.4 44 175-218 80-123 (152)
10 d1k81a_ g.59.1.1 (A:) Zinc-bin 1.9 2.4E+02 0.018 15.3 0.1 16 50-65 2-17 (36)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=27.49 E-value=1.6e+02 Score=24.47 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=2.9
Q ss_pred CchHHHH
Q 011591 283 YGIAGAA 289 (482)
Q Consensus 283 ~g~~G~a 289 (482)
+|.....
T Consensus 376 ~g~~~~~ 382 (417)
T d1pv7a_ 376 IGFQGAY 382 (417)
T ss_dssp HCHHHHH
T ss_pred HCHHHHH
Confidence 4444433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.04 E-value=2.2e+02 Score=24.17 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=12.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q 011591 282 GYGIAGAAWATMVSQVVSAYMMIQSL 307 (482)
Q Consensus 282 ~~g~~G~a~a~~is~~i~~~~~~~~~ 307 (482)
.+|..+..+.......+..++.+...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655555554444444444444333
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.16 E-value=2.1e+02 Score=19.33 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHH
Q 011591 320 PSTNELATILGLAGPVFITMISKVAF 345 (482)
Q Consensus 320 ~~~~~~~~ll~~~~p~~~~~~~~~~~ 345 (482)
.......|+.-.-+|..+-.......
T Consensus 65 ~~~n~~LEiiWTviP~lILi~l~~pS 90 (100)
T d3dtub2 65 FTHNSPLEIAWTIVPIVILVAIGAFS 90 (100)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34455788888888887755544333
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.86 E-value=4.2e+02 Score=17.94 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHH
Q 011591 320 PSTNELATILGLAGPVFITMISKVAF 345 (482)
Q Consensus 320 ~~~~~~~~ll~~~~p~~~~~~~~~~~ 345 (482)
.......|+.-.-+|..+-.......
T Consensus 71 ~~~n~~lEi~WTviP~lIL~~laipS 96 (107)
T d3ehbb2 71 FTHNTPIEVIWTLVPVLILVAIGAFS 96 (107)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888877655554433
No 5
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.58 E-value=9.5e+02 Score=19.08 Aligned_cols=64 Identities=22% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q 011591 238 PAVLVGLVAQSASLGM-KDSLGPLKALAVASAINGIGDVALCSFLGYGIAGAAWATMVSQVVSAY 301 (482)
Q Consensus 238 ~~~~~~~~~~~~l~~~-g~~~~~~~~~i~~~~~~i~l~~~li~~~~~g~~G~a~a~~is~~i~~~ 301 (482)
+........++++.+. ++.+...+..-+...+.+...-+..+.+.+|-.+-|-++++++....+
T Consensus 90 ~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~i 154 (261)
T d3cx5c2 90 FMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAI 154 (261)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhc
Confidence 3344555666666544 556666666555554444444445555678888888888888877654
No 6
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.58 E-value=2.1e+02 Score=15.67 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.2
Q ss_pred cccccCCCCccccccc
Q 011591 50 VKTSCISPGKELIFDE 65 (482)
Q Consensus 50 ~~~~~~~~~~e~~~~~ 65 (482)
....|.++|.+..++.
T Consensus 3 ~C~~C~spDT~l~ke~ 18 (37)
T d1neea2 3 ICHECNRPDTRIIREG 18 (37)
T ss_dssp HHTCCSSCSSCCEEET
T ss_pred ECCCCCCCCCEEEEcC
Confidence 3567889988887765
No 7
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.50 E-value=7.7e+02 Score=15.81 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 011591 441 SVIQEMHKVLIPYILAIVVSPSTH 464 (482)
Q Consensus 441 ~~~~~~~~~l~~~~l~~~~~~~~~ 464 (482)
+..+....+++...+..+..|...
T Consensus 59 ~~lEiiWTiiP~lILi~ia~PSl~ 82 (90)
T d1v54b2 59 QEVETIWTILPAIILILIALPSLR 82 (90)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Confidence 345777777776666666555443
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=2.00 E-value=6.3e+02 Score=13.49 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011591 443 IQEMHKVLIPYILAIVV 459 (482)
Q Consensus 443 ~~~~~~~l~~~~l~~~~ 459 (482)
.+.+....|+++.+++.
T Consensus 6 Aql~ly~Fw~FFagLi~ 22 (37)
T d1eysh2 6 AQITIWAFWLFFFGLII 22 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 9
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=1.98 E-value=1.1e+03 Score=16.33 Aligned_cols=44 Identities=7% Similarity=-0.149 Sum_probs=26.3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCC
Q 011591 175 RQDKNEVQHQISVLLFVGLACGFLMLLFTRFFGSWALTAFTGPR 218 (482)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (482)
++|.++++..+..++-..-.+++.+.-++=-.++.+...++.++
T Consensus 80 k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~ 123 (152)
T d2d5ba1 80 KKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 123 (152)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 45667777766666555555555555555445666777776543
No 10
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.92 E-value=2.4e+02 Score=15.29 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=11.2
Q ss_pred cccccCCCCccccccc
Q 011591 50 VKTSCISPGKELIFDE 65 (482)
Q Consensus 50 ~~~~~~~~~~e~~~~~ 65 (482)
....|.++|.+..++.
T Consensus 2 ~C~~C~spDT~l~ke~ 17 (36)
T d1k81a_ 2 ICRECGKPDTKIIKEG 17 (36)
T ss_dssp CCSSSCSCEEEEEEET
T ss_pred CCCCCCCCCCEEEEcC
Confidence 3467888888777664
Done!