Query 011592
Match_columns 482
No_of_seqs 269 out of 829
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 11:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 65.0 19 0.00064 34.8 8.4 93 301-402 291-383 (394)
2 2jjm_A Glycosyl transferase, g 63.9 22 0.00077 34.7 8.8 88 301-393 296-383 (394)
3 3oy2_A Glycosyltransferase B73 59.6 21 0.00072 35.1 7.8 93 301-404 285-396 (413)
4 3c48_A Predicted glycosyltrans 57.5 46 0.0016 32.8 9.9 91 301-400 337-427 (438)
5 2gek_A Phosphatidylinositol ma 56.9 21 0.00071 34.8 7.1 97 299-404 293-389 (406)
6 2x6q_A Trehalose-synthase TRET 53.1 32 0.0011 33.8 7.9 85 301-392 327-411 (416)
7 3qhp_A Type 1 capsular polysac 48.3 35 0.0012 28.7 6.3 75 302-383 87-162 (166)
8 2r60_A Glycosyl transferase, g 46.4 39 0.0013 34.3 7.4 92 302-402 371-463 (499)
9 2bfw_A GLGA glycogen synthase; 39.9 56 0.0019 28.3 6.5 69 303-377 129-198 (200)
10 2iw1_A Lipopolysaccharide core 38.5 27 0.00093 33.4 4.5 86 301-394 282-370 (374)
11 2dt7_B Splicing factor 3 subun 32.7 28 0.00094 28.0 2.8 35 363-397 38-85 (85)
12 3s28_A Sucrose synthase 1; gly 30.3 87 0.003 35.1 7.4 90 302-396 677-770 (816)
13 3fro_A GLGA glycogen synthase; 29.3 63 0.0021 31.5 5.5 89 302-400 343-432 (439)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=64.96 E-value=19 Score=34.83 Aligned_cols=93 Identities=9% Similarity=0.004 Sum_probs=61.4
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHhhC
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
+++..+---|+||-.|+..+. .-..+.+... .=+-+..+. .++|.+++..+.++++. .++++++|++++++.++
T Consensus 291 ~~~~~~~Ea~a~G~PvI~~~~---~~~~e~i~~~-~g~~~~~~d-~~~l~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~s 364 (394)
T 3okp_A 291 GLGIVYLEAQACGVPVIAGTS---GGAPETVTPA-TGLVVEGSD-VDKLSELLIELLDDPIR-RAAMGAAGRAHVEAEWS 364 (394)
T ss_dssp SSCHHHHHHHHTTCCEEECSS---TTGGGGCCTT-TEEECCTTC-HHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHTB
T ss_pred ccCcHHHHHHHcCCCEEEeCC---CChHHHHhcC-CceEeCCCC-HHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhCC
Confidence 344455567888987777553 2233344444 223333322 38999999999889998 99999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC
Q 011592 381 MEYVYDYMFHLLNEYAKLLKFK 402 (482)
Q Consensus 381 ~~~v~~Y~~~LL~eYarL~~~~ 402 (482)
.+.+..-+..+ |.++.+-+
T Consensus 365 ~~~~~~~~~~~---~~~~~r~~ 383 (394)
T 3okp_A 365 WEIMGERLTNI---LQSEPRKL 383 (394)
T ss_dssp HHHHHHHHHHH---HHSCCC--
T ss_pred HHHHHHHHHHH---HHHhccCc
Confidence 88776655444 44555544
No 2
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=63.85 E-value=22 Score=34.70 Aligned_cols=88 Identities=9% Similarity=0.006 Sum_probs=59.6
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHhhC
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
+++..+---|+||-.|+..+.. -..+.+.....=+-+..+. .++|.+++..+.++++. .++++++|++++++..+
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~-~~~~~~~~~~~~~~~~s 370 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEEL-HRNMGERARESVYEQFR 370 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHSC
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHhCC
Confidence 3455566778999877766532 2233343333323333221 37899999988889998 99999999999988888
Q ss_pred hhHHHHHHHHHHH
Q 011592 381 MEYVYDYMFHLLN 393 (482)
Q Consensus 381 ~~~v~~Y~~~LL~ 393 (482)
.+.+..-+..++.
T Consensus 371 ~~~~~~~~~~~~~ 383 (394)
T 2jjm_A 371 SEKIVSQYETIYY 383 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887765555544
No 3
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=59.63 E-value=21 Score=35.09 Aligned_cols=93 Identities=9% Similarity=0.041 Sum_probs=60.7
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCce-------------------EEecCCCCCcccHHHHHHhcccccH
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRH-------------------YWPIRDKDKCKSIKFAVDWGNTHKQ 361 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~H-------------------YVPv~~d~~~~dL~~~v~w~~~h~~ 361 (482)
+++.-+---|+||-.|+..+.. -..+.+....+ .++.. | .++|.++| .+.++++
T Consensus 285 ~~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~-d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 285 GFGLCSAEGAVLGKPLIISAVG---GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGII-D--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp SSCHHHHHHHTTTCCEEEECCH---HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEEC-C--HHHHHHHH-HHTTSHH
T ss_pred CCCcHHHHHHHcCCCEEEcCCC---ChHHHHccCcccccccccccccccccCcceeeCCC-C--HHHHHHHH-HHhcCHH
Confidence 3444455668888877765432 22334444444 44433 2 37999999 8888999
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhcCCCC
Q 011592 362 KQAQEIGRAASNFIQEELKMEYVYDYMFHLLNEYAKLLKFKPV 404 (482)
Q Consensus 362 ~~Aq~IA~~g~~fa~~~L~~~~v~~Y~~~LL~eYarL~~~~P~ 404 (482)
. .++++++|++++++..+.+.+..- ++.-|.+++.-++.
T Consensus 358 ~-~~~~~~~a~~~~~~~fs~~~~~~~---~~~~~~~~~~~~~~ 396 (413)
T 3oy2_A 358 N-RKEYGKRVQDFVKTKPTWDDISSD---IIDFFNSLLRVESR 396 (413)
T ss_dssp H-HHHHHHHHHHHHTTSCCHHHHHHH---HHHHHHHHTC----
T ss_pred H-HHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHHhhcCC
Confidence 8 999999999999888888776654 44456667765543
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=57.47 E-value=46 Score=32.82 Aligned_cols=91 Identities=5% Similarity=-0.065 Sum_probs=58.9
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHhhC
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
+++..+---|+||-.|+..+.. -..+.+.....=+-+..+. .++|.++|..+.++++. .++++++|++++++ .+
T Consensus 337 ~~~~~~~Eama~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~-~~~~~~~~~~~~~~-~s 410 (438)
T 3c48_A 337 SFGLVAMEAQASGTPVIAARVG---GLPIAVAEGETGLLVDGHS-PHAWADALATLLDDDET-RIRMGEDAVEHART-FS 410 (438)
T ss_dssp SSCHHHHHHHHTTCCEEEESCT---THHHHSCBTTTEEEESSCC-HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHH-HH
T ss_pred CCchHHHHHHHcCCCEEecCCC---ChhHHhhCCCcEEECCCCC-HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHh-CC
Confidence 3445566678899877765532 2233444444323233221 37899999998889998 99999999999988 77
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q 011592 381 MEYVYDYMFHLLNEYAKLLK 400 (482)
Q Consensus 381 ~~~v~~Y~~~LL~eYarL~~ 400 (482)
.+.+..-+.. -|.+++.
T Consensus 411 ~~~~~~~~~~---~~~~~~~ 427 (438)
T 3c48_A 411 WAATAAQLSS---LYNDAIA 427 (438)
T ss_dssp HHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHH---HHHHHhh
Confidence 7666554444 4445544
No 5
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=56.87 E-value=21 Score=34.77 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=64.8
Q ss_pred ccccccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Q 011592 299 GYAWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEE 378 (482)
Q Consensus 299 G~a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~ 378 (482)
+-+++..+---|+||-.|+..+. .-+.+.+....+=+-+..+. .++|.++|..+.++++. .++++++|+++++ .
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~---~~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~-~~~~~~~~~~~~~-~ 366 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDL---DAFRRVLADGDAGRLVPVDD-ADGMAAALIGILEDDQL-RAGYVARASERVH-R 366 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCC---HHHHHHHTTTTSSEECCTTC-HHHHHHHHHHHHHCHHH-HHHHHHHHHHHGG-G
T ss_pred CCCCchHHHHHHHcCCCEEEecC---CcHHHHhcCCCceEEeCCCC-HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHH-h
Confidence 34556666777899998887654 22334444443333333222 37899999998889998 9999999999998 7
Q ss_pred hChhHHHHHHHHHHHHHHHhhcCCCC
Q 011592 379 LKMEYVYDYMFHLLNEYAKLLKFKPV 404 (482)
Q Consensus 379 L~~~~v~~Y~~~LL~eYarL~~~~P~ 404 (482)
.+.+.+..-+..+ |.+++..++.
T Consensus 367 ~s~~~~~~~~~~~---~~~~~~~~~~ 389 (406)
T 2gek_A 367 YDWSVVSAQIMRV---YETVSGAGIK 389 (406)
T ss_dssp GBHHHHHHHHHHH---HHHHCCTTCC
T ss_pred CCHHHHHHHHHHH---HHHHHhhccc
Confidence 7777766544444 5566665543
No 6
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=53.09 E-value=32 Score=33.79 Aligned_cols=85 Identities=8% Similarity=0.013 Sum_probs=58.6
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHhhC
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
+++..+---|+||-.|+..+.. -..+.+.....=+-+. |. ++|.+++..+.++++. .++++++|++++++.++
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~---g~~e~i~~~~~g~l~~-d~--~~la~~i~~ll~~~~~-~~~~~~~a~~~~~~~fs 399 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVG---GIKFQIVDGETGFLVR-DA--NEAVEVVLYLLKHPEV-SKEMGAKAKERVRKNFI 399 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCH---HHHHHCCBTTTEEEES-SH--HHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHTB
T ss_pred CCccHHHHHHHcCCCEEEccCC---CChhheecCCCeEEEC-CH--HHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHcC
Confidence 3455566678999988876532 2233333333322233 43 7899999998889998 99999999999998888
Q ss_pred hhHHHHHHHHHH
Q 011592 381 MEYVYDYMFHLL 392 (482)
Q Consensus 381 ~~~v~~Y~~~LL 392 (482)
.+.+..-+..++
T Consensus 400 ~~~~~~~~~~~~ 411 (416)
T 2x6q_A 400 ITKHMERYLDIL 411 (416)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766555444
No 7
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=48.31 E-value=35 Score=28.74 Aligned_cols=75 Identities=8% Similarity=0.061 Sum_probs=47.4
Q ss_pred cccchHHHHhcCC-cccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHhhC
Q 011592 302 WSVSEKYILACDS-MTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 302 ~S~RlkyLL~~~S-vVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
++..+---|+||- .|+... -..-..+.+.....+++... .++|.+++..+.++++. .++++++|++++ +..+
T Consensus 87 ~~~~~~Eama~G~vPvi~~~--~~~~~~~~~~~~~~~~~~~~---~~~l~~~i~~l~~~~~~-~~~~~~~~~~~~-~~~s 159 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIANS--PLSATRQFALDERSLFEPNN---AKDLSAKIDWWLENKLE-RERMQNEYAKSA-LNYT 159 (166)
T ss_dssp CCHHHHHHHHTTCCEEEECC--TTCGGGGGCSSGGGEECTTC---HHHHHHHHHHHHHCHHH-HHHHHHHHHHHH-HHHC
T ss_pred ccHHHHHHHhcCCCcEEeeC--CCCchhhhccCCceEEcCCC---HHHHHHHHHHHHhCHHH-HHHHHHHHHHHH-HHCC
Confidence 3444555688997 666622 11122223334445655433 37999999999889999 999999999998 5555
Q ss_pred hhH
Q 011592 381 MEY 383 (482)
Q Consensus 381 ~~~ 383 (482)
.+.
T Consensus 160 ~~~ 162 (166)
T 3qhp_A 160 LEN 162 (166)
T ss_dssp ---
T ss_pred hhh
Confidence 544
No 8
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=46.43 E-value=39 Score=34.29 Aligned_cols=92 Identities=7% Similarity=-0.001 Sum_probs=59.8
Q ss_pred cccchHHHHhcCCcccccCc-chhhhhhhhccCCceEEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHHhhC
Q 011592 302 WSVSEKYILACDSMTLLVKP-YFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 302 ~S~RlkyLL~~~SvVlk~~s-~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
++..+---|+||-.|+..+. ...|. +....+=+-+..+. .++|.++|..+.++++. .++++++|++++.+..+
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~g~~e~----v~~~~~g~l~~~~d-~~~la~~i~~ll~~~~~-~~~~~~~a~~~~~~~fs 444 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNGGPAEI----LDGGKYGVLVDPED-PEDIARGLLKAFESEET-WSAYQEKGKQRVEERYT 444 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSBHHHHH----TGGGTSSEEECTTC-HHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHSB
T ss_pred CCcHHHHHHHcCCCEEEecCCCHHHH----hcCCceEEEeCCCC-HHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhCC
Confidence 44455666889988777653 23333 33332211122211 37899999998889998 99999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC
Q 011592 381 MEYVYDYMFHLLNEYAKLLKFK 402 (482)
Q Consensus 381 ~~~v~~Y~~~LL~eYarL~~~~ 402 (482)
.+.+..-+..++ .+++.-+
T Consensus 445 ~~~~~~~~~~~y---~~~~~~~ 463 (499)
T 2r60_A 445 WQETARGYLEVI---QEIADRK 463 (499)
T ss_dssp HHHHHHHHHHHH---HHHHHC-
T ss_pred HHHHHHHHHHHH---HHHHhhh
Confidence 887766554444 4455433
No 9
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=39.93 E-value=56 Score=28.26 Aligned_cols=69 Identities=3% Similarity=-0.090 Sum_probs=45.9
Q ss_pred ccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhccc-ccHHHHHHHHHHHHHHHHH
Q 011592 303 SVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKQAQEIGRAASNFIQE 377 (482)
Q Consensus 303 S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~-h~~~~Aq~IA~~g~~fa~~ 377 (482)
+..+---|+||-.|+..... .+.+.+ ...+-+-+..+. .++|.+++..+.+ +++. .++++++|++++++
T Consensus 129 ~~~~~Ea~a~G~PvI~~~~~---~~~e~~-~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~-~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 129 GLVALEAMCLGAIPIASAVG---GLRDII-TNETGILVKAGD-PGELANAILKALELSRSD-LSKFRENCKKRAMS 198 (200)
T ss_dssp CHHHHHHHHTTCEEEEESCH---HHHHHC-CTTTCEEECTTC-HHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCEEEeCCC---ChHHHc-CCCceEEecCCC-HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHh
Confidence 44455667888877776532 222333 333333333221 3789999999888 9999 99999999999876
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=38.54 E-value=27 Score=33.43 Aligned_cols=86 Identities=5% Similarity=-0.037 Sum_probs=56.1
Q ss_pred ccccchHHHHhcCCcccccCc-chhhhhhhhccCCce--EEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 011592 301 AWSVSEKYILACDSMTLLVKP-YFHDFFIRYLQPLRH--YWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQE 377 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s-~~~e~f~~~L~P~~H--YVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~ 377 (482)
+++..+---|+||-.|+..+. ...|...+ ... .++-..| .++|.+++..+.++++. .++++++|++++++
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~----~~~g~~~~~~~~--~~~l~~~i~~l~~~~~~-~~~~~~~~~~~~~~ 354 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYIAD----ANCGTVIAEPFS--QEQLNEVLRKALTQSPL-RMAWAENARHYADT 354 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHHHH----HTCEEEECSSCC--HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhhcc----CCceEEeCCCCC--HHHHHHHHHHHHcChHH-HHHHHHHHHHHHHH
Confidence 345556667888987776653 23333322 222 2221123 37899999998889998 99999999999987
Q ss_pred hhChhHHHHHHHHHHHH
Q 011592 378 ELKMEYVYDYMFHLLNE 394 (482)
Q Consensus 378 ~L~~~~v~~Y~~~LL~e 394 (482)
+ +.+.+..-+..++.+
T Consensus 355 ~-~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 355 Q-DLYSLPEKAADIITG 370 (374)
T ss_dssp S-CCSCHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHHHHHH
Confidence 6 555565555566554
No 11
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=32.69 E-value=28 Score=27.98 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHH------------hhChh-HHHHHHHHHHHHHHH
Q 011592 363 QAQEIGRAASNFIQE------------ELKME-YVYDYMFHLLNEYAK 397 (482)
Q Consensus 363 ~Aq~IA~~g~~fa~~------------~L~~~-~v~~Y~~~LL~eYar 397 (482)
||+=+|++|.+|... +|++. ....|+.+++.+|.+
T Consensus 38 TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~Y~~ 85 (85)
T 2dt7_B 38 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 85 (85)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHHHhC
Confidence 488999999987532 44444 578999999999964
No 12
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=30.33 E-value=87 Score=35.10 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=58.5
Q ss_pred cccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhc----ccccHHHHHHHHHHHHHHHHH
Q 011592 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWG----NTHKQKQAQEIGRAASNFIQE 377 (482)
Q Consensus 302 ~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~----~~h~~~~Aq~IA~~g~~fa~~ 377 (482)
++.-+---|+||-.|+..... -..+.+....+=+-+..+. .++|.++|..+ ..+++. .++++++|++++.+
T Consensus 677 fglvllEAMA~G~PVIasd~G---G~~EiV~dg~~Gllv~p~D-~e~LA~aI~~lL~~Ll~d~~~-~~~m~~~ar~~a~~ 751 (816)
T 3s28_A 677 FGLTVVEAMTCGLPTFATCKG---GPAEIIVHGKSGFHIDPYH-GDQAADTLADFFTKCKEDPSH-WDEISKGGLQRIEE 751 (816)
T ss_dssp SCHHHHHHHHTTCCEEEESSB---THHHHCCBTTTBEEECTTS-HHHHHHHHHHHHHHHHHCTHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCEEEeCCC---ChHHHHccCCcEEEeCCCC-HHHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHHH
Confidence 344455568899877765432 1223333444323333321 36788888554 388998 99999999999998
Q ss_pred hhChhHHHHHHHHHHHHHH
Q 011592 378 ELKMEYVYDYMFHLLNEYA 396 (482)
Q Consensus 378 ~L~~~~v~~Y~~~LL~eYa 396 (482)
..+.+.+..=+..+...|.
T Consensus 752 ~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 752 KYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHh
Confidence 8988887776666666554
No 13
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=29.35 E-value=63 Score=31.47 Aligned_cols=89 Identities=4% Similarity=0.008 Sum_probs=56.3
Q ss_pred cccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhccc-ccHHHHHHHHHHHHHHHHHhhC
Q 011592 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 302 ~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~-h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
++..+---|+||-.|+..+.. -..+.+....-++ +..+. .++|.++|..+.+ +++. .++++++|++++ +..+
T Consensus 343 ~~~~~~EAma~G~Pvi~s~~~---~~~e~~~~~~g~~-~~~~d-~~~la~~i~~ll~~~~~~-~~~~~~~~~~~~-~~~s 415 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIASAVG---GLRDIITNETGIL-VKAGD-PGELANAILKALELSRSD-LSKFRENCKKRA-MSFS 415 (439)
T ss_dssp SCHHHHHHHHTTCEEEEESST---HHHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHHTTTT-THHHHHHHHHHH-HTSC
T ss_pred ccHHHHHHHHCCCCeEEcCCC---CcceeEEcCceEE-eCCCC-HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH-hhCc
Confidence 344455568999877776532 2233333442232 33221 3789999998877 8888 999999999999 5577
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q 011592 381 MEYVYDYMFHLLNEYAKLLK 400 (482)
Q Consensus 381 ~~~v~~Y~~~LL~eYarL~~ 400 (482)
.+.+.. +++.-|.++++
T Consensus 416 ~~~~~~---~~~~~~~~~~~ 432 (439)
T 3fro_A 416 WEKSAE---RYVKAYTGSID 432 (439)
T ss_dssp HHHHHH---HHHHHHHTCSC
T ss_pred HHHHHH---HHHHHHHHHHH
Confidence 776654 44444555544
Done!