Query 011592
Match_columns 482
No_of_seqs 269 out of 829
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 11:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011592.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011592hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 27.3 27 0.002 30.4 4.6 71 301-378 281-354 (370)
2 d2dt7b1 a.217.1.1 (B:134-217) 26.5 16 0.0011 27.3 2.3 35 363-397 37-84 (84)
3 d2bisa1 c.87.1.8 (A:1-437) Gly 25.6 44 0.0032 30.1 6.0 89 302-400 341-430 (437)
4 d2bfwa1 c.87.1.8 (A:218-413) G 22.3 58 0.0042 26.4 5.6 72 301-378 123-195 (196)
5 d1veha_ d.52.8.1 (A:) HIRA-int 18.3 64 0.0047 24.2 4.4 48 115-165 40-89 (92)
6 d2f9fa1 c.87.1.8 (A:2-167) Fir 11.8 65 0.0047 25.4 3.0 67 301-373 98-165 (166)
7 d2dt6a1 a.217.1.1 (A:48-110) S 11.3 95 0.0069 21.4 3.4 37 363-399 9-58 (63)
8 d1poia_ c.124.1.2 (A:) Glutaco 10.2 90 0.0066 28.4 3.7 34 427-460 231-266 (317)
9 d2nxoa1 c.94.1.1 (A:5-281) Hyp 6.9 75 0.0055 27.3 1.5 22 348-370 204-225 (277)
10 d1xhja_ d.52.8.1 (A:) Nitrogen 6.3 4.2E+02 0.031 19.0 5.5 50 110-162 27-79 (88)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=27.33 E-value=27 Score=30.44 Aligned_cols=71 Identities=6% Similarity=-0.046 Sum_probs=47.6
Q ss_pred ccccchHHHHhcCCcccccCc-chhhhhhhhccCCce-EEecC-CCCCcccHHHHHHhcccccHHHHHHHHHHHHHHHHH
Q 011592 301 AWSVSEKYILACDSMTLLVKP-YFHDFFIRYLQPLRH-YWPIR-DKDKCKSIKFAVDWGNTHKQKQAQEIGRAASNFIQE 377 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s-~~~e~f~~~L~P~~H-YVPv~-~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~fa~~ 377 (482)
+++..+---|+||-.|+..+. -..|. +....+ ++-.+ .| .++|.++|.-+.++++. .++++++|++++++
T Consensus 281 ~~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d--~~~la~~i~~ll~d~~~-~~~~~~~ar~~~~~ 353 (370)
T d2iw1a1 281 AAGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS--QEQLNEVLRKALTQSPL-RMAWAENARHYADT 353 (370)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC--HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHH
T ss_pred cccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC--HHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHH
Confidence 345556666889987776542 13333 333343 22223 23 37899999988889999 99999999999976
Q ss_pred h
Q 011592 378 E 378 (482)
Q Consensus 378 ~ 378 (482)
+
T Consensus 354 ~ 354 (370)
T d2iw1a1 354 Q 354 (370)
T ss_dssp S
T ss_pred h
Confidence 4
No 2
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.54 E-value=16 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHH------------hhChh-HHHHHHHHHHHHHHH
Q 011592 363 QAQEIGRAASNFIQE------------ELKME-YVYDYMFHLLNEYAK 397 (482)
Q Consensus 363 ~Aq~IA~~g~~fa~~------------~L~~~-~v~~Y~~~LL~eYar 397 (482)
+|+-+|++|.+|-.. +|++. ....|+.++|.+|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 377888888877422 34333 458899999999964
No 3
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=25.56 E-value=44 Score=30.15 Aligned_cols=89 Identities=4% Similarity=0.007 Sum_probs=54.5
Q ss_pred cccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhcc-cccHHHHHHHHHHHHHHHHHhhC
Q 011592 302 WSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGN-THKQKQAQEIGRAASNFIQEELK 380 (482)
Q Consensus 302 ~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~-~h~~~~Aq~IA~~g~~fa~~~L~ 380 (482)
++..+.--|+||-.|+..+..- ..+.+.....|+ ++... .++|.++|..+. .+++. .++++++|++.+++ ++
T Consensus 341 ~~~~~~Eama~G~Pvi~~~~g~---~~e~i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~-~~~~~~~~~~~~~~-~s 413 (437)
T d2bisa1 341 FGLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSD-LSKFRENCKKRAMS-FS 413 (437)
T ss_dssp SCHHHHHHHTTTCEEEEESCTT---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSC-THHHHHHHHHHHHH-SC
T ss_pred cchHHHHHHHCCCCEEEeCCCC---cHHhEECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHh-CC
Confidence 3444555588999888654321 122233223443 22221 378889997654 46677 89999999999865 68
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q 011592 381 MEYVYDYMFHLLNEYAKLLK 400 (482)
Q Consensus 381 ~~~v~~Y~~~LL~eYarL~~ 400 (482)
.+.+.. +++.-|.++++
T Consensus 414 ~~~~a~---~~~~iY~~~i~ 430 (437)
T d2bisa1 414 WEKSAE---RYVKAYTGSID 430 (437)
T ss_dssp HHHHHH---HHHHHHHTCSC
T ss_pred HHHHHH---HHHHHHHHHHH
Confidence 777653 45555766653
No 4
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=22.25 E-value=58 Score=26.44 Aligned_cols=72 Identities=3% Similarity=-0.067 Sum_probs=46.0
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCceEEecCCCCCcccHHHHHHhccc-ccHHHHHHHHHHHHHHHHHh
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRHYWPIRDKDKCKSIKFAVDWGNT-HKQKQAQEIGRAASNFIQEE 378 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~HYVPv~~d~~~~dL~~~v~w~~~-h~~~~Aq~IA~~g~~fa~~~ 378 (482)
+++..+.--|+||-+|+..... ...+.+.....|+ +..+. ..+|.++|..+.. ..+. .++|+++|++.+.++
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~---~~~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~-~~~~~~~a~~~a~~f 195 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVG---GLRDIITNETGIL-VKAGD-PGELANAILKALELSRSD-LSKFRENCKKRAMSF 195 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCH---HHHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHT
T ss_pred cccccchhhhhcCceeeecCCC---ccceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHhC
Confidence 4566677789999988876532 2223233333343 33332 3788888876544 4566 889999999988653
No 5
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.30 E-value=64 Score=24.20 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=33.7
Q ss_pred EEEECCEEEEEcccccccc-hhHHHH-HHHHHHHHhcCCCCCCeEEEeeCCCC
Q 011592 115 LILVNNKVYIHKYKQSIQT-RDVFTI-WGILQLLRKYPGRLPDLELMFDCDDR 165 (482)
Q Consensus 115 v~I~nG~lyv~~~~~~~~t-R~~~tl-~~il~ll~~~~~~LPDvef~~n~~D~ 165 (482)
+-|.+|.|||.-.+.+..= -...|+ .+|..+|+. .+|++.-+.++.|.
T Consensus 40 v~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 40 RGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 5778999999887665431 112333 577788876 58998888888774
No 6
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.81 E-value=65 Score=25.43 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=39.9
Q ss_pred ccccchHHHHhcCCcccccCcchhhhhhhhccCCce-EEecCCCCCcccHHHHHHhcccccHHHHHHHHHHHHH
Q 011592 301 AWSVSEKYILACDSMTLLVKPYFHDFFIRYLQPLRH-YWPIRDKDKCKSIKFAVDWGNTHKQKQAQEIGRAASN 373 (482)
Q Consensus 301 a~S~RlkyLL~~~SvVlk~~s~~~e~f~~~L~P~~H-YVPv~~d~~~~dL~~~v~w~~~h~~~~Aq~IA~~g~~ 373 (482)
+++..+---|+||-.|+...... +.+.+..... |+ +..|. +++.+++..+.+++++..+.+.++|++
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~---~~e~i~~~~~g~~-~~~d~--~~~~~~i~~l~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGG---FKETVINEKTGYL-VNADV--NEIIDAMKKVSKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHH---HHHHCCBTTTEEE-ECSCH--HHHHHHHHHHHHCTTTTHHHHHHHHHT
T ss_pred cccccccccccccccceeecCCc---ceeeecCCccccc-CCCCH--HHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 44555667788998888776432 2233333333 33 23343 789999998888876514455555554
No 7
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.35 E-value=95 Score=21.37 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHH------------HhhChhH-HHHHHHHHHHHHHHhh
Q 011592 363 QAQEIGRAASNFIQ------------EELKMEY-VYDYMFHLLNEYAKLL 399 (482)
Q Consensus 363 ~Aq~IA~~g~~fa~------------~~L~~~~-v~~Y~~~LL~eYarL~ 399 (482)
+|+-||++|.+|-. .+|.+.+ ...|+...|.+|.+--
T Consensus 9 tA~fVak~G~~fE~~l~~~e~~np~F~FL~~~~~~h~YY~~~l~~~~~g~ 58 (63)
T d2dt6a1 9 TASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGK 58 (63)
T ss_dssp HHHHHHHHCTHHHHHHHHHSTTCGGGGGGSTTSTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhccCCCcCcCCCCCCCCcHHHHHHHHHHHcCC
Confidence 48888888888742 2455543 5799999999997643
No 8
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}
Probab=10.15 E-value=90 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=27.2
Q ss_pred hhhhhhcccCCCCCCCCCCCCCC--ChHHHHHHHHH
Q 011592 427 KFMMESLVKGPSITNPCTLPPPY--EPKVLGAFYRR 460 (482)
Q Consensus 427 ~~~~~~~v~~~~~~~~c~~~~~~--~~~~~~~~~~~ 460 (482)
.++.+-.|..|-..+||.|++-| |-+.++++.+-
T Consensus 231 g~~VDaVV~aP~GAhP~~~~g~Y~~D~~~~~~y~~~ 266 (317)
T d1poia_ 231 GMCVDAVVLAPYGAHPSQCYGLYDYDNPFLKVYDKV 266 (317)
T ss_dssp GGGCCEEEECTTTTTTSBBTTTBCCCHHHHHHHHHH
T ss_pred hhheEEEEecCCCcCCcCCcCccccCHHHHHHHHHH
Confidence 45777788899999999999966 77788877653
No 9
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.90 E-value=75 Score=27.31 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=16.1
Q ss_pred cHHHHHHhcccccHHHHHHHHHH
Q 011592 348 SIKFAVDWGNTHKQKQAQEIGRA 370 (482)
Q Consensus 348 dL~~~v~w~~~h~~~~Aq~IA~~ 370 (482)
-+.++.+|+++|+++ |.+|+.+
T Consensus 204 a~~~a~~~~~~~p~e-a~~~~a~ 225 (277)
T d2nxoa1 204 AFLASRNLSLEEVEK-VAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHTHHH-HHHHHHT
T ss_pred HHHHHHHHHHhCHHH-HHHHHHH
Confidence 455677899999999 6666543
No 10
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=6.34 E-value=4.2e+02 Score=19.03 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=31.6
Q ss_pred cCeEE-EEEECCEEEEEccccccc-chhHHHH-HHHHHHHHhcCCCCCCeEEEeeC
Q 011592 110 TAHFR-LILVNNKVYIHKYKQSIQ-TRDVFTI-WGILQLLRKYPGRLPDLELMFDC 162 (482)
Q Consensus 110 ~~~~r-v~I~nG~lyv~~~~~~~~-tR~~~tl-~~il~ll~~~~~~LPDvef~~n~ 162 (482)
.|.+. +-|.+|.|||.-.+.+-. .-...|+ .+|.++|+. .+|++.-+.++
T Consensus 27 GGdvelv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~---~vpev~~V~~V 79 (88)
T d1xhja_ 27 GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE---EVPGVIEVEQV 79 (88)
T ss_dssp SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHH---HSTTCCEEEEE
T ss_pred CCcEEEEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHH---HCCCCceEEEe
Confidence 44433 467899999998765433 1223344 678888886 57776655553
Done!