Query 011595
Match_columns 482
No_of_seqs 132 out of 1401
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 3E-23 1E-27 219.6 11.4 380 33-453 108-510 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 3.2E-21 1.1E-25 202.1 22.7 353 33-452 107-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.7 2E-16 6.8E-21 163.1 18.1 315 33-447 118-435 (451)
4 3o7q_A L-fucose-proton symport 99.5 3.9E-13 1.3E-17 137.9 19.6 265 33-405 116-407 (438)
5 2gfp_A EMRD, multidrug resista 99.4 1.4E-13 4.8E-18 138.7 8.6 260 33-403 87-350 (375)
6 4gc0_A D-xylose-proton symport 99.3 6.3E-11 2.2E-15 123.5 17.4 80 33-118 125-212 (491)
7 2cfq_A Lactose permease; trans 99.2 2.2E-11 7.5E-16 125.2 8.6 139 261-447 262-401 (417)
8 3o7q_A L-fucose-proton symport 98.7 3.9E-07 1.3E-11 92.9 17.2 115 260-403 63-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.7 3.4E-07 1.2E-11 93.6 16.5 116 260-403 64-179 (451)
10 4aps_A DI-OR tripeptide H+ sym 98.6 8.3E-07 2.9E-11 92.2 16.9 144 260-451 56-202 (491)
11 2gfp_A EMRD, multidrug resista 98.5 4.9E-07 1.7E-11 90.5 12.7 112 261-404 38-149 (375)
12 2xut_A Proton/peptide symporte 98.4 6.8E-06 2.3E-10 86.0 16.4 142 261-448 57-201 (524)
13 4gc0_A D-xylose-proton symport 98.0 0.00015 5.2E-09 74.8 16.5 128 262-403 59-186 (491)
14 2cfq_A Lactose permease; trans 96.2 0.00093 3.2E-08 67.9 0.8 86 35-126 313-399 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=3e-23 Score=219.58 Aligned_cols=380 Identities=20% Similarity=0.327 Sum_probs=224.6
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|+..|+..++++|++|+++. .++...+++++.+.++|.++||.+++++.+++||++.|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 567888999999999999999999999999997641 12356788899999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCc-------
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQ------- 185 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 185 (482)
++..+++.+.+++.+++..+++|++++..+..+.+..+.+++..... ....+...........+ .++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 260 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYA---LVNIPTLGIVAG 260 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHT---GGGTTTTCSSHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhh---hcccchhhhhhh
Confidence 98877776666554444433333332222222222222221110000 00000000000000000 00000
Q ss_pred -------------cchh--hhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhccc
Q 011595 186 -------------NLRF--FNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDR 250 (482)
Q Consensus 186 -------------~~~~--~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~ 250 (482)
...| ++..+... +.++.+++|..+....+++....++..+.|..+.+..+..+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (524)
T 2xut_A 261 LCCAMVLVMGFVGAGASLQLERARKSH---------PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK 331 (524)
T ss_dssp HHHHHHHHHHHHHTGGGTHHHHSCCSC---------CSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCC
T ss_pred hhhhhhhhhcccccchhhHHhhhhccc---------cHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCC
Confidence 0011 11111000 11112234444445556666677777888877777666554433
Q ss_pred CCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011595 251 AIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDH 330 (482)
Q Consensus 251 ~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~ 330 (482)
. .+ .+.+.+..++++..++..|+.+++..+..+|++++ +++.+++.+|+++.+++++++.+.+...
T Consensus 332 ~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~------- 397 (524)
T 2xut_A 332 P---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM------- 397 (524)
T ss_dssp C---SS-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-------
T ss_pred C---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 2 11 24667788888889999999888766666664322 5677888899999998887765532100
Q ss_pred CCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCC
Q 011595 331 SIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHG 410 (482)
Q Consensus 331 ~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~ 410 (482)
+.....+.+|+++.+++.++|+.+..|..++++.+.+|+++||+++|+++...++|+.+|+.+.+.+.+.++
T Consensus 398 -----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--- 469 (524)
T 2xut_A 398 -----DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--- 469 (524)
T ss_dssp -----TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH---
T ss_pred -----cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence 001134667888999999999999999999999999999999999999999999999999999998764321
Q ss_pred ccccccC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 011595 411 HKGWILN-NLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYKA 453 (482)
Q Consensus 411 ~~~w~~~-~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~~ 453 (482)
.+|.++ +.+.+ .+.|++++++++++++++++..++++++.
T Consensus 470 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 470 -TEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp -HHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccccccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 234322 12211 23367778888888888877777665543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=3.2e-21 Score=202.12 Aligned_cols=353 Identities=15% Similarity=0.214 Sum_probs=227.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++++++.|+|.|...|+..++++|++|+++. +|+.++++++.+.++|.++||.+++++.+++||++.|++.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 567888999999999999999999999999998742 4788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceee---cCCCCC-chhhHHHHHH--------------HHHHhcCCCCCCCCccccccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRH---KKPTGS-PFTRMAKVIV--------------AAIRKWNVPLPTNPKELYELDLEDYA 174 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~---~~p~~~-~~~~~~~v~~--------------~a~~~~~~~~~~~~~~~~~~~~~~~~ 174 (482)
++..+++++.+++..++... ++|+.. ...+..+... ........+. ++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~----------~~~~~- 251 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL----------PAYIN- 251 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT----------THHHH-
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc----------ccchh-
Confidence 88777776665544333221 112111 1111111100 0000000000 00000
Q ss_pred hhccccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhh-cccCCC
Q 011595 175 QKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTT-LDRAIG 253 (482)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~-~~~~~~ 253 (482)
.................++. ......++++..+...+++....++..+.+..+.+..+..+ .+..
T Consensus 252 -----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 317 (491)
T 4aps_A 252 -----------LLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-- 317 (491)
T ss_dssp -----------HHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS--
T ss_pred -----------hhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC--
Confidence 00000000000000000000 00111234444445666667788888888888766544432 2211
Q ss_pred CCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCc
Q 011595 254 SSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIV 333 (482)
Q Consensus 254 ~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
. .+.+.+..++++..++..++.+++.+++.+|. ....+++.+|+++.+++++++.+..... +
T Consensus 318 --~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-- 379 (491)
T 4aps_A 318 --W-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G-- 379 (491)
T ss_dssp --S-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C--
T ss_pred --c-cCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C--
Confidence 1 44778899999999999999999877765552 4667888899999999988877653210 0
Q ss_pred cCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCccc
Q 011595 334 EKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKG 413 (482)
Q Consensus 334 ~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 413 (482)
.+...+.+++++.+++.++|+.+..|..++++.+..|++.||.++|+++....+|+.+++.+.+.+.+.
T Consensus 380 ---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------- 448 (491)
T 4aps_A 380 ---TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------- 448 (491)
T ss_dssp ---CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--------
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 011346678889999999999999999999999999999999999999999999999999998876531
Q ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 011595 414 WILNNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVYK 452 (482)
Q Consensus 414 w~~~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~~ 452 (482)
.+...|..++++++++.+++++..++.+++
T Consensus 449 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 449 ---------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp ---------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123456677777788877777776665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.71 E-value=2e-16 Score=163.09 Aligned_cols=315 Identities=10% Similarity=0.010 Sum_probs=187.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhccc-ccchhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMG-WTLGYGL 111 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g-~~~~F~i 111 (482)
+.+.+++++++.|+|.|...|...+++.|++|++ +|+++++++..+.++|.++||.+++++.+.+| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5667889999999999999999999999999976 68999999999999999999999999888898 9999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhh
Q 011595 112 PTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFN 191 (482)
Q Consensus 112 ~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (482)
.++..++..++.++..++.++.+...+. . .... .... ..++ ...+...+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~-~~~~---~~~~-----------~~~~~~~~~~ 242 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------EYKN-DYPD---DYNE-----------KAEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------TTCC-C---------------------------CCTH
T ss_pred HHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------hhcc-cccc---cchh-----------hhhccccccc
Confidence 9877666555443333321110000000 0 0000 0000 0000 0000000000
Q ss_pred hhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhHhhcccCCCCCeeeCccccchhhHHHH
Q 011595 192 KAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQGTTLDRAIGSSFKIPPASLIGFVTLSM 271 (482)
Q Consensus 192 ~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~~~~~~~~~~~g~~i~~~~~~~in~i~i 271 (482)
.. + .+....+.+ ..+.+.....+..+....+.++... ....+. -....+.+..+..+..
T Consensus 243 ~~---------~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~-~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 243 IF---------M-----QYVLPNKLL---WYIAIANVFVYLLRYGILDWSPTYL---KEVKHF-ALDKSSWAYFLYEYAG 301 (451)
T ss_dssp HH---------H-----HHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHHHB---TTBSCC-CHHHHHHHHHHHHHHH
T ss_pred ch---------H-----HHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC-CHHHHHHHHHHHHHHH
Confidence 00 0 000001122 1222222222333222222222221 111220 0011345666777777
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHHHH
Q 011595 272 LICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHI-IIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLPQF 350 (482)
Q Consensus 272 li~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~~~ 350 (482)
++..++.+++.+++.+ +..+.+.++.++.+ ++++++.+.. ..+.++.....
T Consensus 302 ~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~ 353 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMNP-------------------AGNPTVDMICM 353 (451)
T ss_dssp HHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSCC-------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHhc-------------------ccCHHHHHHHH
Confidence 7777777777554311 22333445554444 5554433210 12445666777
Q ss_pred HHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhH-HHHHhhhhhhhhccccccCCccccccCCCCcchhHHHHH
Q 011595 351 VLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGV-GNFFSTFLLSTVSNITKRHGHKGWILNNLNVSHLDYYYA 429 (482)
Q Consensus 351 ~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~f~ 429 (482)
++.+++.....+....++.+..|++.||+++|+.+....+ |..+++.+.+.+.+..+ +...|.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g----------------~~~~~~ 417 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------WDGGFM 417 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------SHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------cHHHHH
Confidence 8888888888888899999999999999999999999999 99999999998764221 245566
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 011595 430 FFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 430 ~~~~l~~l~~ll~~~~~~ 447 (482)
+.+++++++.++++...+
T Consensus 418 ~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 418 VMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 667777777766665543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.52 E-value=3.9e-13 Score=137.88 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=163.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhh-hccc-------
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQ-DNMG------- 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~-~~~g------- 104 (482)
+.+.+++++++.|+|.|...|...++++|.+|++ +|+++++++..+.++|.++++.+++++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 6788999999999999999999999999999986 5899999999999999999999999998 5544
Q ss_pred ------------------ccchhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCcccc
Q 011595 105 ------------------WTLGYGLPTLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELY 166 (482)
Q Consensus 105 ------------------~~~~F~i~~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~ 166 (482)
|++.|++.++..++..+.+++.+. ++.++++++ .. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~----------------~~---~----- 243 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHS----------------DA---K----- 243 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCC----------------CS---S-----
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccc----------------cc---c-----
Confidence 899998777655555444433221 111110000 00 0
Q ss_pred ccchhhhhhhccccccCCccchhhhhhhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHh-H
Q 011595 167 ELDLEDYAQKWKYMIDSTQNLRFFNKAAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFVKQ-G 245 (482)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~~~-~ 245 (482)
+ ......+.+ +...+.++ ...+....++..+....+.++.. .
T Consensus 244 ---~------------~~~~~~~~~-------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 244 ---Q------------GSFSASLSR-------------------LARIRHWR---WAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp ---T------------TSHHHHHHH-------------------HTTCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---c------------cchhhhHHH-------------------HHhChHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 000000000 00001111 11112222222222222222211 1
Q ss_pred hhcccCCCCCeeeCccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011595 246 TTLDRAIGSSFKIPPASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLS 325 (482)
Q Consensus 246 ~~~~~~~~~g~~i~~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~ 325 (482)
++ ..+. -....+.+..+..+..++..++.+++.+++ ++.+.+.++.++.+++++++.+..
T Consensus 287 ~~---~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~----- 346 (438)
T 3o7q_A 287 EE---IPGM-TAGFAANYLTGTMVCFFIGRFTGTWLISRF-----------APHKVLAAYALIAMALCLISAFAG----- 346 (438)
T ss_dssp HH---STTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hc---cCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHHHHHHHHHHHHHcC-----
Confidence 11 1120 001134555666667777777777775543 334456677777777766554421
Q ss_pred hhhhcCCccCCCcccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhccc
Q 011595 326 VAKDHSIVEKGQQVPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSNI 405 (482)
Q Consensus 326 ~~~~~~~~~~~~~~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~~ 405 (482)
+ .+.+...++.+++.....|...+.+.+..|++ ++..+++.. ...+|+.+++.+.+.+.+.
T Consensus 347 ----------------~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 347 ----------------G-HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp ----------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred ----------------C-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1 23344567888999999999999999999987 899998877 6669999999999987753
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.43 E-value=1.4e-13 Score=138.70 Aligned_cols=260 Identities=11% Similarity=0.029 Sum_probs=159.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhcccccchhhhh
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDNMGWTLGYGLP 112 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~ 112 (482)
+.+.+++.+++.|++.+...|...+++.|.+|++ +|+++++++..+.++|..++|.+++++.++++|++.|++.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 6778889999999999999999999999999876 5899999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhhHHHHHHHHHHhcCCCCCCCCccccccchhhhhhhccccccCCccchhhhh
Q 011595 113 TLGLSISIAIFFAGTPFYRHKKPTGSPFTRMAKVIVAAIRKWNVPLPTNPKELYELDLEDYAQKWKYMIDSTQNLRFFNK 192 (482)
Q Consensus 113 ~i~~~l~~i~~~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (482)
++..++..+..+.. .+++++++++. +.. .
T Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~-------------~~~---------------------------~-------- 189 (375)
T 2gfp_A 161 LVLCAGVTFSMARW---MPETRPVDAPR-------------TRL---------------------------L-------- 189 (375)
T ss_dssp HHHHHHHHCCCCCS---SCCCSTTTCCC-------------CCT---------------------------T--------
T ss_pred HHHHHHHHHHHHHH---CcccCCCCccc-------------ccH---------------------------H--------
Confidence 76655443322222 22211111000 000 0
Q ss_pred hhhccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH---HhHhhcccCCCCCeeeCccccchhhHH
Q 011595 193 AAVKTSSTNPWMLCSVTQVEETKQMLAMIPILVATFVPSTMLAQINTLFV---KQGTTLDRAIGSSFKIPPASLIGFVTL 269 (482)
Q Consensus 193 a~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~~~~~~~~~q~~s~~~---~~~~~~~~~~~~g~~i~~~~~~~in~i 269 (482)
..+ .+....|.+.... +.....+..+....+.++ ....+.+. ...+.+..+..+
T Consensus 190 --------~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~g~~~~~~~~ 246 (375)
T 2gfp_A 190 --------TSY-----KTLFGNSGFNCYL---LMLIGGLAGIAAFEACSGVLMGAVLGLSS-------MTVSILFILPIP 246 (375)
T ss_dssp --------TCS-----THHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCSSHHHHHHHH-------HHHHHHHHTHHH
T ss_pred --------HHH-----HHHhcCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHH
Confidence 000 0111222222221 122222222222211111 11011111 012344555566
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhcCCccCCCcccchHHHHHH
Q 011595 270 SMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVI-HIIIMVIASFTERYRLSVAKDHSIVEKGQQVPLTIFVLLP 348 (482)
Q Consensus 270 ~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~li~ 348 (482)
..++..++.+++ .+|. +. ++..+..+ ..++.......... ..+.+..+.
T Consensus 247 ~~~~~~~~~~~l----~~r~-------~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 296 (375)
T 2gfp_A 247 AAFFGAWFAGRP----NKRF-------ST--LMWQSVICCLLAGLLMWIPDWFG-----------------VMNVWTLLV 296 (375)
T ss_dssp HHHHHHHHHHTT----TTHH-------HH--HHHHHHHHHHHTSSSSSHHHHHH-----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhc-----------------cccHHHHHH
Confidence 666555555544 3331 11 34444444 22232211111000 114455667
Q ss_pred HHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 349 QFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 349 ~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..++.+++.....|...+.+.+..| +.||+++|+.+....+|..+++.+.+.+.
T Consensus 297 ~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 297 PAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp HHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999 89999999999999999999999988765
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.28 E-value=6.3e-11 Score=123.49 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHHHHHHHHHHHHHHhHhHhhhhhc--------cc
Q 011595 33 QLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGALFANTVLVYIQDN--------MG 104 (482)
Q Consensus 33 ~~~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~~y~~iNiG~~ig~~l~~~L~~~--------~g 104 (482)
+.+.++++|++.|+|.|+..|...++++|..|++ +|++..+++..+..+|.++++.++..+... .+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 7889999999999999999999999999999976 689999999999999999999888776542 35
Q ss_pred ccchhhhhHHHHHH
Q 011595 105 WTLGYGLPTLGLSI 118 (482)
Q Consensus 105 ~~~~F~i~~i~~~l 118 (482)
|++.+.+..+..++
T Consensus 199 ~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 199 WRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHTTHHHHHH
T ss_pred hHHHhhhhhhhhhh
Confidence 66666655544333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.20 E-value=2.2e-11 Score=125.18 Aligned_cols=139 Identities=9% Similarity=0.008 Sum_probs=95.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+.+..++.+..++..++.+++.||+.+| +.+.+|.++.+++++.+.+.
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~--------------------- 309 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA--------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3456667777777777788876655443 33556777777665554321
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHH-HHHHhhHHHHHhhhhhhhhccccccCCccccccCCC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY-SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILNNL 419 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~~ 419 (482)
.+.++++...++.+++.....+....++.+..|++.||+.+|. ++....+|+.++|.+.+.+.+..
T Consensus 310 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~------------- 376 (417)
T 2cfq_A 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------------- 376 (417)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-------------
Confidence 1334555555667777767777778899999999999999998 58888899999999998766311
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhh
Q 011595 420 NVSHLDYYYAFFAILNVLNFVFFLVVAK 447 (482)
Q Consensus 420 ~~~~~~~~f~~~~~l~~l~~ll~~~~~~ 447 (482)
.+...|.+.+++++++.++.+...+
T Consensus 377 ---g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 377 ---GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1344566777777777766555443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.69 E-value=3.9e-07 Score=92.90 Aligned_cols=115 Identities=11% Similarity=0.099 Sum_probs=94.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+..++..|+.+++.|++.+| +.+.+|.++.+++.+++.....
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------ 113 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------ 113 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------
Confidence 35667777888888889999987655444 4578888888888877633210
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...++.|+|+....+...+++.+..|++.|+.++|+.....++|..+|+.+.+.+.
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256778888999999999999999999999999999999999999999999999999998776
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.68 E-value=3.4e-07 Score=93.62 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=94.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQV 339 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
.+++.++..+...+..|+.+++.|++.+| +-+.+|.++.+++.+++++....
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~----------------- 115 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA----------------- 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------
Confidence 45677788888888889999887655444 45678888888888887762100
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 340 PLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 340 ~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
..+.++++...++.|+|+....|...+++.+..|++.|+.++|++....++|..+|+.+++.+.
T Consensus 116 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0144677888999999999999999999999999999999999999999999999999998755
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.60 E-value=8.3e-07 Score=92.16 Aligned_cols=144 Identities=13% Similarity=0.178 Sum_probs=109.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCc
Q 011595 260 PASLIGFVTLSMLICVVLYDRYFVK-IMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQ 338 (482)
Q Consensus 260 ~~~~~~in~i~ili~~pl~~~l~~~-~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (482)
.+++.++..+...+..|+.+++.|+ +.+| +-+.+|.++.+++.+++++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~------------------- 105 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3567788888888889999999776 4444 34677888888887776542
Q ss_pred ccchHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchh--hHHHHHHHHHHhhHHHHHhhhhhhhhccccccCCcccccc
Q 011595 339 VPLTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENM--KSLGTSYSMTTLGVGNFFSTFLLSTVSNITKRHGHKGWIL 416 (482)
Q Consensus 339 ~~is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~--~G~~~g~~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 416 (482)
.+.++++...++.|+|+....|...+++.+..|++. |+.+++.++...++|..+|+.+++.+.+.. +|
T Consensus 106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~-- 175 (491)
T 4aps_A 106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GY-- 175 (491)
T ss_dssp --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CH--
T ss_pred --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hH--
Confidence 245677888899999999999999999999999988 888888899999999999999998876421 12
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 011595 417 NNLNVSHLDYYYAFFAILNVLNFVFFLVVAKFYVY 451 (482)
Q Consensus 417 ~~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~~~~ 451 (482)
...|.+.+++.+++.++++...++..+
T Consensus 176 --------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 --------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 344555566666666666655555443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.54 E-value=4.9e-07 Score=90.49 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=92.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.++..+...+..|+.+++.|++.+|+ .+.++.++.+++.+...+.+
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----------~~~~~~~~~~~~~~~~~~~~-------------------- 86 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRP-----------VILVGMSIFMLATLVAVTTS-------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCC-----------CCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------hHHHHHHHHHHHHHHHHHhc--------------------
Confidence 45677788888888889998876554442 23578888888877766542
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhcc
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVSN 404 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~~ 404 (482)
+.++++...++.+++.....+...+++.+..|++.|+.++|.+....++|..+++.+.+.+.+
T Consensus 87 -~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 87 -SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 556778888999999999999999999999999999999999999999999999999987653
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.36 E-value=6.8e-06 Score=86.03 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=102.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCccc
Q 011595 261 ASLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVP 340 (482)
Q Consensus 261 ~~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (482)
+++.++..+..++..++.+++.|++ .++.+.+.+|.++.+++.+++.+. +
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~----------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~ 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRF----------FGKYNTILWLSLIYCVGHAFLAIF--------------------E 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTS----------SCSHHHHHHHHHHHHHHHHHHHHT--------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------hcchHHHHHHHHHHHHHHHHHHHh--------------------c
Confidence 4566777777777788888885543 033455677888888887776542 1
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHH---HHHHhhHHHHHhhhhhhhhccccccCCccccccC
Q 011595 341 LTIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSY---SMTTLGVGNFFSTFLLSTVSNITKRHGHKGWILN 417 (482)
Q Consensus 341 is~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~---~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 417 (482)
.+.++++...++.++|+....|...+++.+..|++.||..++. +....++|..+|+.+.+.+.+.. +
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g---- 176 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------G---- 176 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------C----
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------c----
Confidence 1456777888999999999999999999999999999877776 88889999999999988765311 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 011595 418 NLNVSHLDYYYAFFAILNVLNFVFFLVVAKF 448 (482)
Q Consensus 418 ~~~~~~~~~~f~~~~~l~~l~~ll~~~~~~~ 448 (482)
....|.+.+++.+++.++++...++
T Consensus 177 ------~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 177 ------AAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2344556666656555555443333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.96 E-value=0.00015 Score=74.82 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=89.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccCCCcccc
Q 011595 262 SLIGFVTLSMLICVVLYDRYFVKIMRRWTKNPRGITLLQRMGIGLVIHIIIMVIASFTERYRLSVAKDHSIVEKGQQVPL 341 (482)
Q Consensus 262 ~~~~in~i~ili~~pl~~~l~~~~~~k~~~~~~~~s~~~k~~iG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 341 (482)
++.+...+..++..++.+++.|++.|| +-+.++.++..++-+.+++.............. ......
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~---~~~~a~ 124 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTV---PVYLAG 124 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSC---CGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHH---HHHHhh
Confidence 334445566666777888887766665 335677777777777666432100000000000 000123
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhHHHHHhhcCchhhHHHHHHHHHHhhHHHHHhhhhhhhhc
Q 011595 342 TIFVLLPQFVLMGTADAFLEVAKIEFFYDQAPENMKSLGTSYSMTTLGVGNFFSTFLLSTVS 403 (482)
Q Consensus 342 s~~~li~~~~l~~lgE~l~sp~~~~~~~~~aP~~~~G~~~g~~~l~~~iG~~lg~~l~~~~~ 403 (482)
+++.++...+++|+|+....+....++.+.+|++.||..++++.....+|..++..+.....
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 56778888999999999999999999999999999999999999999999999888876654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.23 E-value=0.00093 Score=67.88 Aligned_cols=86 Identities=9% Similarity=-0.066 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCCCCccchhhhcccCCCCChhHHhhhhhHHHH-HHHHHHHHHHHHhHhHhhhhhcccccchhhhhH
Q 011595 35 GIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNW-WMFSIFFGALFANTVLVYIQDNMGWTLGYGLPT 113 (482)
Q Consensus 35 ~~~~~~l~li~~G~G~~~p~~~a~~~d~~~~~~~~~~~~r~~~fs~-~y~~iNiG~~ig~~l~~~L~~~~g~~~~F~i~~ 113 (482)
+.+.+..++.+++.+...+...+++.|.+|++ .|++++++ +..+.++|.+++|.++|++.+++||+..|.+.+
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 34444444556665555666778889998864 57888888 467778999999999999998889999999888
Q ss_pred HHHHHHHHHHHhc
Q 011595 114 LGLSISIAIFFAG 126 (482)
Q Consensus 114 i~~~l~~i~~~~~ 126 (482)
+..+++.++.+..
T Consensus 387 ~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 387 LVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhh
Confidence 7777776655443
Done!