Query 011596
Match_columns 482
No_of_seqs 370 out of 2854
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11498 bcsA cellulose syntha 100.0 2.1E-42 4.6E-47 377.4 36.9 315 141-479 189-509 (852)
2 TIGR03030 CelA cellulose synth 100.0 6E-41 1.3E-45 368.0 34.0 320 140-480 59-399 (713)
3 PRK14583 hmsR N-glycosyltransf 100.0 5.1E-38 1.1E-42 329.0 33.0 241 219-470 73-313 (444)
4 PRK11204 N-glycosyltransferase 100.0 3.6E-38 7.8E-43 328.4 30.9 242 219-471 52-293 (420)
5 cd06437 CESA_CaSu_A2 Cellulose 100.0 9.5E-38 2.1E-42 298.9 24.0 232 221-457 1-232 (232)
6 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 3.8E-36 8.3E-41 314.1 29.9 251 219-477 47-306 (439)
7 PRK05454 glucosyltransferase M 100.0 5.1E-35 1.1E-39 315.8 36.1 296 173-479 79-394 (691)
8 cd06427 CESA_like_2 CESA_like_ 100.0 6.5E-36 1.4E-40 288.2 24.0 238 221-466 1-239 (241)
9 cd04191 Glucan_BSP_ModH Glucan 100.0 1.9E-34 4.1E-39 279.1 24.6 233 223-459 1-253 (254)
10 COG1215 Glycosyltransferases, 100.0 3.5E-34 7.5E-39 299.7 27.7 236 220-464 53-291 (439)
11 TIGR03472 HpnI hopanoid biosyn 100.0 1.4E-33 3.1E-38 289.1 25.9 234 219-459 39-274 (373)
12 cd06421 CESA_CelA_like CESA_Ce 100.0 1.4E-33 3E-38 269.4 22.2 231 221-460 1-233 (234)
13 cd06435 CESA_NdvC_like NdvC_li 100.0 4.6E-33 1E-37 266.8 24.1 233 224-464 1-235 (236)
14 PRK14716 bacteriophage N4 adso 100.0 2.6E-32 5.6E-37 285.5 30.0 285 169-464 17-331 (504)
15 PF13641 Glyco_tranf_2_3: Glyc 100.0 9.1E-35 2E-39 277.0 8.9 228 221-456 1-228 (228)
16 cd02520 Glucosylceramide_synth 100.0 1.1E-32 2.3E-37 257.4 18.3 193 221-456 1-195 (196)
17 cd04190 Chitin_synth_C C-termi 100.0 1.3E-32 2.7E-37 266.0 15.1 205 225-459 1-243 (244)
18 PRK11234 nfrB bacteriophage N4 100.0 3.6E-30 7.7E-35 279.6 28.6 285 170-465 12-337 (727)
19 cd04192 GT_2_like_e Subfamily 100.0 1.6E-29 3.4E-34 240.2 21.2 223 225-456 1-229 (229)
20 cd06434 GT2_HAS Hyaluronan syn 100.0 1E-29 2.2E-34 243.2 17.3 223 222-459 1-234 (235)
21 cd06439 CESA_like_1 CESA_like_ 100.0 9.5E-29 2.1E-33 239.1 21.8 224 219-459 27-250 (251)
22 PRK15489 nfrB bacteriophage N4 100.0 1.8E-27 3.9E-32 255.4 28.9 288 169-465 19-345 (703)
23 PLN02893 Cellulose synthase-li 100.0 5.1E-27 1.1E-31 249.4 27.4 277 196-479 75-518 (734)
24 TIGR03469 HonB hopene-associat 100.0 3.6E-27 7.8E-32 242.6 23.0 230 219-456 38-281 (384)
25 cd02525 Succinoglycan_BP_ExoA 100.0 5.7E-27 1.2E-31 225.5 22.2 234 222-467 1-237 (249)
26 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 1.4E-25 3E-30 223.3 18.3 239 224-469 1-269 (299)
27 cd06438 EpsO_like EpsO protein 99.9 2.4E-25 5.3E-30 205.3 15.4 181 225-416 1-183 (183)
28 PLN02189 cellulose synthase 99.9 4.4E-24 9.5E-29 231.6 21.8 256 219-479 329-812 (1040)
29 PLN02195 cellulose synthase A 99.9 1E-23 2.3E-28 227.6 23.3 256 218-479 249-747 (977)
30 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 4E-24 8.7E-29 199.5 17.6 196 221-436 1-199 (202)
31 cd04195 GT2_AmsE_like GT2_AmsE 99.9 6.6E-24 1.4E-28 198.0 17.3 196 224-436 1-199 (201)
32 COG2943 MdoH Membrane glycosyl 99.9 1.9E-22 4.2E-27 201.8 26.8 282 174-465 103-404 (736)
33 PLN02638 cellulose synthase A 99.9 2.7E-23 5.8E-28 226.2 21.5 257 218-479 346-850 (1079)
34 cd06436 GlcNAc-1-P_transferase 99.9 1.4E-23 2.9E-28 195.2 16.4 181 225-413 1-191 (191)
35 PF03142 Chitin_synth_2: Chiti 99.9 4.2E-23 9.1E-28 214.6 19.6 242 219-461 23-378 (527)
36 PLN02248 cellulose synthase-li 99.9 9.7E-23 2.1E-27 221.7 23.0 192 284-479 587-907 (1135)
37 PLN02190 cellulose synthase-li 99.9 1E-22 2.3E-27 215.5 22.2 275 195-479 68-532 (756)
38 cd06913 beta3GnTL1_like Beta 1 99.9 3.9E-22 8.6E-27 189.1 20.9 204 225-437 1-208 (219)
39 PLN02400 cellulose synthase 99.9 1.6E-22 3.5E-27 220.2 19.2 258 218-479 353-855 (1085)
40 PLN02436 cellulose synthase A 99.9 2.2E-22 4.7E-27 218.4 19.3 256 218-479 362-866 (1094)
41 cd06433 GT_2_WfgS_like WfgS an 99.9 2E-22 4.4E-27 186.8 16.6 192 224-437 1-193 (202)
42 PLN02726 dolichyl-phosphate be 99.9 5.8E-22 1.3E-26 191.3 20.4 212 219-442 7-222 (243)
43 cd04196 GT_2_like_d Subfamily 99.9 2.7E-22 5.8E-27 188.4 16.0 199 224-435 1-200 (214)
44 cd04185 GT_2_like_b Subfamily 99.9 1.1E-21 2.3E-26 183.4 18.4 176 225-443 1-178 (202)
45 PLN02915 cellulose synthase A 99.9 1.2E-21 2.7E-26 212.7 20.6 256 219-479 285-814 (1044)
46 cd02526 GT2_RfbF_like RfbF is 99.9 5.5E-22 1.2E-26 189.9 14.8 202 225-442 1-208 (237)
47 cd06420 GT2_Chondriotin_Pol_N 99.9 4.3E-21 9.2E-26 176.0 18.9 176 225-437 1-180 (182)
48 cd04186 GT_2_like_c Subfamily 99.9 2.7E-21 5.9E-26 173.6 16.7 163 225-438 1-165 (166)
49 PRK10018 putative glycosyl tra 99.9 4.2E-21 9.1E-26 188.4 18.6 206 219-443 3-212 (279)
50 cd02522 GT_2_like_a GT_2_like_ 99.9 1E-20 2.2E-25 179.0 19.8 185 223-437 1-185 (221)
51 cd06423 CESA_like CESA_like is 99.9 1.2E-21 2.6E-26 176.2 12.3 180 225-413 1-180 (180)
52 cd06442 DPM1_like DPM1_like re 99.9 1E-20 2.2E-25 179.4 18.4 202 225-441 1-206 (224)
53 PRK10073 putative glycosyl tra 99.9 6.2E-21 1.3E-25 192.0 16.8 201 219-434 4-212 (328)
54 PF13632 Glyco_trans_2_3: Glyc 99.9 3.1E-21 6.7E-26 179.3 13.5 142 314-457 1-143 (193)
55 PRK10063 putative glycosyl tra 99.8 1.3E-19 2.8E-24 175.4 19.9 190 221-436 1-194 (248)
56 cd04188 DPG_synthase DPG_synth 99.8 2.1E-19 4.5E-24 169.4 17.7 195 225-432 1-202 (211)
57 COG1216 Predicted glycosyltran 99.8 1.8E-19 4E-24 179.8 18.3 212 220-440 2-222 (305)
58 PTZ00260 dolichyl-phosphate be 99.8 6.8E-18 1.5E-22 170.1 26.4 207 219-434 68-288 (333)
59 PF13506 Glyco_transf_21: Glyc 99.8 4.7E-19 1E-23 162.1 14.3 163 284-455 6-175 (175)
60 KOG2547 Ceramide glucosyltrans 99.8 2.9E-18 6.3E-23 166.0 14.2 231 219-456 83-315 (431)
61 cd04179 DPM_DPG-synthase_like 99.8 2.9E-18 6.2E-23 157.5 13.6 180 225-419 1-184 (185)
62 PF10111 Glyco_tranf_2_2: Glyc 99.8 1.9E-17 4.1E-22 163.3 19.9 205 224-438 1-222 (281)
63 PF00535 Glycos_transf_2: Glyc 99.8 3.9E-19 8.3E-24 159.2 6.8 169 224-403 1-169 (169)
64 TIGR01556 rhamnosyltran L-rham 99.8 5.5E-18 1.2E-22 167.1 15.6 198 228-441 1-204 (281)
65 PF03552 Cellulose_synt: Cellu 99.8 5E-19 1.1E-23 187.3 5.5 192 283-479 167-496 (720)
66 PRK13915 putative glucosyl-3-p 99.7 4.4E-17 9.6E-22 162.1 17.2 198 219-431 29-238 (306)
67 cd04187 DPM1_like_bac Bacteria 99.7 4.8E-17 1E-21 149.3 15.8 177 225-418 1-179 (181)
68 PRK10714 undecaprenyl phosphat 99.7 1.8E-15 3.8E-20 152.2 21.9 193 220-434 5-200 (325)
69 cd00761 Glyco_tranf_GTA_type G 99.6 4.8E-15 1E-19 129.7 14.9 153 225-428 1-155 (156)
70 KOG2978 Dolichol-phosphate man 99.6 1.2E-14 2.5E-19 128.6 15.1 202 221-435 3-210 (238)
71 KOG2571 Chitin synthase/hyalur 99.6 3.1E-14 6.7E-19 153.4 16.2 150 309-460 438-600 (862)
72 cd02511 Beta4Glucosyltransfera 99.5 3.1E-13 6.6E-18 129.3 13.7 104 222-344 1-104 (229)
73 COG0463 WcaA Glycosyltransfera 99.4 1.5E-12 3.2E-17 119.3 11.3 106 220-336 2-107 (291)
74 KOG3738 Predicted polypeptide 99.2 7.4E-11 1.6E-15 115.6 7.9 206 217-435 120-344 (559)
75 cd02514 GT13_GLCNAC-TI GT13_GL 99.1 8.4E-10 1.8E-14 110.0 15.1 181 223-433 2-203 (334)
76 KOG2977 Glycosyltransferase [G 99.1 7.6E-09 1.6E-13 97.9 19.1 207 222-442 68-291 (323)
77 KOG3736 Polypeptide N-acetylga 99.1 5.8E-11 1.3E-15 124.6 5.0 254 219-481 140-431 (578)
78 KOG3737 Predicted polypeptide 99.1 5.1E-10 1.1E-14 109.5 9.1 210 217-434 151-383 (603)
79 PF13712 Glyco_tranf_2_5: Glyc 98.8 3.1E-08 6.8E-13 93.8 11.7 179 226-444 3-203 (217)
80 cd00899 b4GalT Beta-4-Galactos 98.1 2.6E-05 5.6E-10 73.1 11.3 177 222-460 3-199 (219)
81 PF03071 GNT-I: GNT-I family; 98.0 0.00011 2.5E-09 75.3 14.0 210 219-452 91-320 (434)
82 COG4092 Predicted glycosyltran 97.7 0.0029 6.2E-08 60.0 16.9 196 221-422 2-215 (346)
83 PF13704 Glyco_tranf_2_4: Glyc 97.5 0.0003 6.5E-09 57.5 6.7 84 230-325 1-85 (97)
84 PF03452 Anp1: Anp1; InterPro 97.4 0.0015 3.3E-08 63.1 11.1 115 219-335 23-167 (269)
85 PF09488 Osmo_MPGsynth: Mannos 97.2 0.0014 3.1E-08 64.8 8.9 125 221-352 50-204 (381)
86 TIGR02460 osmo_MPGsynth mannos 97.1 0.0049 1.1E-07 60.7 11.0 100 220-327 49-175 (381)
87 PRK14503 mannosyl-3-phosphogly 97.1 0.0048 1E-07 61.1 11.0 100 220-326 50-175 (393)
88 KOG3588 Chondroitin synthase 1 96.8 0.032 6.9E-07 55.4 13.5 202 219-434 227-433 (494)
89 PF05679 CHGN: Chondroitin N-a 96.7 0.066 1.4E-06 57.2 16.6 203 220-434 246-463 (499)
90 PF11316 Rhamno_transf: Putati 96.6 0.015 3.3E-07 55.6 10.0 93 238-337 46-140 (234)
91 PF02709 Glyco_transf_7C: N-te 96.5 0.0039 8.4E-08 48.9 4.5 48 387-434 19-69 (78)
92 PRK14502 bifunctional mannosyl 96.3 0.03 6.5E-07 60.9 11.2 101 220-328 54-181 (694)
93 PF11735 CAP59_mtransfer: Cryp 96.2 0.17 3.7E-06 48.5 14.4 199 223-424 2-241 (241)
94 PF11397 GlcNAc: Glycosyltrans 95.1 0.15 3.2E-06 51.7 10.1 210 223-437 2-261 (343)
95 TIGR03584 PseF pseudaminic aci 94.7 0.93 2E-05 43.0 13.8 157 231-405 22-189 (222)
96 KOG1413 N-acetylglucosaminyltr 94.6 0.47 1E-05 47.2 11.5 125 219-347 65-206 (411)
97 KOG3916 UDP-Gal:glucosylcerami 94.5 0.16 3.5E-06 50.1 8.2 182 220-463 150-350 (372)
98 PLN02917 CMP-KDO synthetase 94.5 1.3 2.9E-05 43.9 14.8 185 233-432 72-267 (293)
99 PF01644 Chitin_synth_1: Chiti 94.4 0.58 1.2E-05 41.9 10.7 28 309-336 136-163 (163)
100 PF01762 Galactosyl_T: Galacto 94.3 0.29 6.2E-06 45.4 9.3 180 234-429 4-193 (195)
101 cd00218 GlcAT-I Beta1,3-glucur 94.3 0.63 1.4E-05 43.8 11.4 102 221-333 1-117 (223)
102 PF09258 Glyco_transf_64: Glyc 94.1 0.2 4.3E-06 48.4 8.0 110 223-348 1-111 (247)
103 PF02434 Fringe: Fringe-like; 93.9 0.28 6E-06 47.6 8.5 110 309-432 84-204 (252)
104 TIGR00466 kdsB 3-deoxy-D-manno 93.8 1.9 4.2E-05 41.2 14.2 184 231-431 22-222 (238)
105 COG1212 KdsB CMP-2-keto-3-deox 93.3 4 8.7E-05 38.5 14.5 179 234-430 29-219 (247)
106 KOG1476 Beta-1,3-glucuronyltra 93.2 1.2 2.5E-05 43.8 11.4 105 220-336 86-205 (330)
107 PLN02458 transferase, transfer 92.3 2.6 5.7E-05 41.8 12.5 104 219-332 110-223 (346)
108 PF02364 Glucan_synthase: 1,3- 92.1 0.28 6E-06 54.4 6.1 161 295-459 275-459 (817)
109 PF06306 CgtA: Beta-1,4-N-acet 91.5 0.43 9.4E-06 46.9 6.1 104 222-333 88-197 (347)
110 TIGR03202 pucB xanthine dehydr 90.9 2.3 5E-05 38.9 10.2 102 231-341 24-126 (190)
111 cd04182 GT_2_like_f GT_2_like_ 90.2 2.7 5.8E-05 37.9 10.0 96 231-340 24-120 (186)
112 PF12804 NTP_transf_3: MobA-li 89.6 2.4 5.2E-05 37.4 9.0 96 227-340 19-115 (160)
113 cd02540 GT2_GlmU_N_bac N-termi 89.1 5.2 0.00011 37.5 11.4 96 227-338 21-117 (229)
114 PF04666 Glyco_transf_54: N-Ac 88.8 4.9 0.00011 39.9 11.1 118 220-338 51-196 (297)
115 TIGR03310 matur_ygfJ molybdenu 88.4 5.5 0.00012 36.0 10.7 97 231-341 23-120 (188)
116 PF03214 RGP: Reversibly glyco 88.1 0.22 4.9E-06 49.1 1.2 99 222-338 9-118 (348)
117 PF05045 RgpF: Rhamnan synthes 87.7 19 0.00041 38.6 15.5 173 219-402 263-461 (498)
118 PRK13385 2-C-methyl-D-erythrit 85.6 5.8 0.00013 37.5 9.5 99 231-340 28-127 (230)
119 cd06422 NTP_transferase_like_1 85.4 8.3 0.00018 36.0 10.4 96 226-335 24-120 (221)
120 PRK13368 3-deoxy-manno-octulos 85.2 11 0.00023 35.8 11.1 92 232-340 26-118 (238)
121 PLN03133 beta-1,3-galactosyltr 85.2 34 0.00074 37.6 15.8 193 221-433 385-595 (636)
122 cd04181 NTP_transferase NTP_tr 84.4 9.4 0.0002 35.3 10.2 94 230-337 27-120 (217)
123 PRK14353 glmU bifunctional N-a 84.2 11 0.00023 39.6 11.6 103 226-342 27-130 (446)
124 KOG4179 Lysyl hydrolase/glycos 83.8 1.7 3.7E-05 44.1 5.0 111 221-335 3-134 (568)
125 cd02517 CMP-KDO-Synthetase CMP 83.6 15 0.00033 34.7 11.5 94 231-339 24-118 (239)
126 PRK05450 3-deoxy-manno-octulos 83.2 18 0.00039 34.3 11.9 94 231-339 25-119 (245)
127 PLN03153 hypothetical protein; 82.9 3.8 8.3E-05 43.3 7.3 99 309-431 208-313 (537)
128 cd06425 M1P_guanylylT_B_like_N 82.9 8.9 0.00019 36.2 9.5 100 227-338 26-126 (233)
129 PRK00317 mobA molybdopterin-gu 82.7 10 0.00022 34.6 9.6 90 231-340 28-118 (193)
130 cd06915 NTP_transferase_WcbM_l 82.4 18 0.00038 33.5 11.2 93 233-338 29-121 (223)
131 KOG1022 Acetylglucosaminyltran 82.2 12 0.00025 39.6 10.3 119 219-353 441-560 (691)
132 TIGR01173 glmU UDP-N-acetylglu 82.1 12 0.00026 39.1 11.1 103 226-346 22-125 (451)
133 cd06428 M1P_guanylylT_A_like_N 81.3 13 0.00029 35.7 10.2 103 226-338 25-128 (257)
134 TIGR03552 F420_cofC 2-phospho- 80.9 20 0.00044 32.7 10.9 86 234-337 31-117 (195)
135 cd02503 MobA MobA catalyzes th 80.8 15 0.00032 33.0 9.8 85 231-336 24-109 (181)
136 cd02513 CMP-NeuAc_Synthase CMP 80.7 19 0.00042 33.4 10.9 97 231-339 24-126 (223)
137 KOG2287 Galactosyltransferases 80.7 26 0.00056 35.7 12.3 199 221-432 95-303 (349)
138 PRK14352 glmU bifunctional N-a 80.6 21 0.00045 38.0 12.2 102 226-340 26-128 (482)
139 cd06431 GT8_LARGE_C LARGE cata 80.0 34 0.00074 33.6 12.6 108 222-335 2-120 (280)
140 cd02523 PC_cytidylyltransferas 79.2 8 0.00017 36.3 7.8 92 227-334 24-115 (229)
141 COG1213 Predicted sugar nucleo 79.2 4.2 9.2E-05 38.6 5.6 99 232-346 30-129 (239)
142 cd02518 GT2_SpsF SpsF is a gly 79.0 23 0.00049 33.4 10.8 92 231-338 22-115 (233)
143 cd02516 CDP-ME_synthetase CDP- 78.4 17 0.00036 33.8 9.6 100 231-341 26-126 (218)
144 TIGR02665 molyb_mobA molybdopt 77.0 16 0.00034 33.0 8.7 90 231-338 25-115 (186)
145 cd00505 Glyco_transf_8 Members 76.7 37 0.0008 32.4 11.6 114 225-345 3-128 (246)
146 cd02508 ADP_Glucose_PP ADP-glu 76.6 22 0.00047 32.7 9.7 107 226-338 23-136 (200)
147 PF05060 MGAT2: N-acetylglucos 75.3 25 0.00053 35.7 10.0 52 220-272 30-81 (356)
148 PLN03180 reversibly glycosylat 74.9 8.4 0.00018 38.5 6.5 33 300-335 85-124 (346)
149 PRK14355 glmU bifunctional N-a 74.2 38 0.00083 35.7 11.9 98 226-338 25-123 (459)
150 PF13733 Glyco_transf_7N: N-te 73.7 3.2 7E-05 35.9 2.9 77 220-327 46-127 (136)
151 PF01697 Glyco_transf_92: Glyc 73.5 20 0.00043 34.9 9.0 116 223-346 3-144 (285)
152 PRK15480 glucose-1-phosphate t 73.5 32 0.00068 34.1 10.4 101 226-338 28-128 (292)
153 TIGR01207 rmlA glucose-1-phosp 73.1 31 0.00068 34.0 10.3 100 226-337 24-123 (286)
154 cd04189 G1P_TT_long G1P_TT_lon 72.9 42 0.0009 31.5 10.9 98 226-337 25-122 (236)
155 cd04183 GT2_BcE_like GT2_BcbE_ 72.5 32 0.0007 32.2 10.0 98 227-335 24-121 (231)
156 COG2068 Uncharacterized MobA-r 71.7 44 0.00095 31.1 10.0 97 230-339 28-125 (199)
157 PF00483 NTP_transferase: Nucl 71.4 8.3 0.00018 36.6 5.7 106 226-340 24-130 (248)
158 PRK14358 glmU bifunctional N-a 71.0 44 0.00096 35.5 11.6 99 226-340 29-128 (481)
159 cd06430 GT8_like_2 GT8_like_2 70.5 89 0.0019 31.2 12.6 118 222-346 2-132 (304)
160 PF01501 Glyco_transf_8: Glyco 69.7 19 0.00041 33.8 7.8 96 229-326 5-113 (250)
161 KOG0916 1,3-beta-glucan syntha 69.5 7.4 0.00016 45.6 5.3 137 295-434 1051-1198(1679)
162 TIGR01105 galF UTP-glucose-1-p 69.2 63 0.0014 32.0 11.5 103 226-337 28-155 (297)
163 cd02538 G1P_TT_short G1P_TT_sh 69.2 88 0.0019 29.5 12.2 94 232-337 30-124 (240)
164 COG0659 SUL1 Sulfate permease 69.2 1.8E+02 0.0038 31.7 18.0 49 234-287 460-512 (554)
165 cd04194 GT8_A4GalT_like A4GalT 68.0 28 0.00062 33.1 8.6 91 234-326 13-110 (248)
166 PF09837 DUF2064: Uncharacteri 66.6 42 0.00091 28.5 8.3 62 279-348 32-94 (122)
167 TIGR00454 conserved hypothetic 66.4 43 0.00094 30.5 9.0 93 231-340 25-118 (183)
168 PRK14360 glmU bifunctional N-a 66.1 67 0.0015 33.6 11.7 100 226-340 23-123 (450)
169 PLN03193 beta-1,3-galactosyltr 66.0 66 0.0014 33.3 10.9 116 310-438 235-356 (408)
170 PF13896 Glyco_transf_49: Glyc 65.5 45 0.00097 33.5 9.6 47 300-349 119-168 (317)
171 PF03360 Glyco_transf_43: Glyc 65.1 12 0.00027 35.0 5.1 72 253-331 11-97 (207)
172 COG1209 RfbA dTDP-glucose pyro 64.6 71 0.0015 31.2 10.1 100 226-338 25-124 (286)
173 PRK14356 glmU bifunctional N-a 64.2 65 0.0014 33.8 11.1 92 232-337 32-124 (456)
174 PF11051 Mannosyl_trans3: Mann 63.2 63 0.0014 31.5 10.0 23 309-331 88-112 (271)
175 PRK00155 ispD 2-C-methyl-D-ery 63.0 62 0.0013 30.3 9.7 43 296-340 82-125 (227)
176 KOG1278 Endosomal membrane pro 62.9 91 0.002 33.5 11.3 48 36-85 259-306 (628)
177 PRK02726 molybdopterin-guanine 61.6 74 0.0016 29.3 9.8 89 231-338 31-120 (200)
178 cd06426 NTP_transferase_like_2 61.0 80 0.0017 29.1 10.1 97 227-338 24-120 (220)
179 TIGR00453 ispD 2-C-methyl-D-er 60.7 77 0.0017 29.3 9.9 95 231-340 25-120 (217)
180 COG1208 GCD1 Nucleoside-diphos 58.6 65 0.0014 32.9 9.5 99 227-339 27-125 (358)
181 PF05212 DUF707: Protein of un 58.4 53 0.0012 32.3 8.2 206 220-442 40-255 (294)
182 COG0746 MobA Molybdopterin-gua 57.3 87 0.0019 28.9 9.3 90 230-340 26-116 (192)
183 PRK09451 glmU bifunctional N-a 55.2 1.3E+02 0.0028 31.6 11.5 95 226-337 27-122 (456)
184 PF09949 DUF2183: Uncharacteri 53.8 40 0.00087 27.6 5.7 46 237-287 52-97 (100)
185 cd02524 G1P_cytidylyltransfera 53.4 1.3E+02 0.0029 28.6 10.4 102 226-338 23-143 (253)
186 KOG2264 Exostosin EXT1L [Signa 53.1 24 0.00053 37.5 5.2 93 222-330 650-743 (907)
187 PRK14354 glmU bifunctional N-a 52.6 1.4E+02 0.003 31.3 11.2 96 226-338 24-120 (458)
188 PRK14357 glmU bifunctional N-a 51.7 1.7E+02 0.0036 30.6 11.6 94 226-338 22-116 (448)
189 cd02509 GDP-M1P_Guanylyltransf 50.4 1.5E+02 0.0033 28.7 10.4 90 226-325 26-116 (274)
190 cd06432 GT8_HUGT1_C_like The C 50.1 1.7E+02 0.0037 28.1 10.4 98 233-334 13-117 (248)
191 PRK15171 lipopolysaccharide 1, 50.0 1E+02 0.0022 31.1 9.3 111 221-334 24-142 (334)
192 TIGR02623 G1P_cyt_trans glucos 49.8 1.6E+02 0.0035 28.1 10.4 100 226-337 24-142 (254)
193 PRK10122 GalU regulator GalF; 49.5 2.3E+02 0.0049 28.0 11.5 104 226-338 28-156 (297)
194 cd02541 UGPase_prokaryotic Pro 49.0 1E+02 0.0022 29.6 8.9 104 226-338 25-147 (267)
195 COG1861 SpsF Spore coat polysa 48.7 1.5E+02 0.0032 28.2 9.1 106 226-348 22-128 (241)
196 KOG2791 N-acetylglucosaminyltr 48.5 1.5E+02 0.0033 29.8 9.6 50 222-272 118-167 (455)
197 PLN02728 2-C-methyl-D-erythrit 46.5 1.8E+02 0.004 28.0 10.0 93 234-339 53-146 (252)
198 cd04198 eIF-2B_gamma_N The N-t 46.4 1.8E+02 0.0039 26.9 9.8 100 226-339 25-127 (214)
199 cd04197 eIF-2B_epsilon_N The N 46.1 2.1E+02 0.0045 26.5 10.2 103 226-338 25-129 (217)
200 PF02348 CTP_transf_3: Cytidyl 45.4 98 0.0021 28.5 7.9 95 233-341 24-119 (217)
201 PRK14489 putative bifunctional 42.7 1.5E+02 0.0032 30.3 9.3 41 295-338 79-120 (366)
202 TIGR01099 galU UTP-glucose-1-p 40.5 2.2E+02 0.0047 27.1 9.7 104 226-338 25-147 (260)
203 PRK00844 glgC glucose-1-phosph 39.0 1.4E+02 0.0029 31.0 8.4 105 226-338 30-142 (407)
204 PRK00576 molybdopterin-guanine 38.9 2.5E+02 0.0054 25.0 9.3 43 296-338 59-102 (178)
205 PRK09382 ispDF bifunctional 2- 38.3 2E+02 0.0042 29.7 9.3 40 296-338 83-123 (378)
206 COG3181 Uncharacterized protei 38.3 2.1E+02 0.0045 28.8 9.0 111 222-341 29-149 (319)
207 TIGR01208 rmlA_long glucose-1- 38.2 2.6E+02 0.0056 28.1 10.2 97 228-338 26-123 (353)
208 PLN03183 acetylglucosaminyltra 36.6 5.2E+02 0.011 27.1 13.4 105 219-329 76-193 (421)
209 PF11181 YflT: Heat induced st 34.0 78 0.0017 25.8 4.6 30 226-255 2-31 (103)
210 PRK05293 glgC glucose-1-phosph 33.2 2.2E+02 0.0048 28.9 8.8 106 226-337 28-141 (380)
211 PRK14359 glmU bifunctional N-a 32.4 3E+02 0.0066 28.4 9.9 91 227-334 25-116 (430)
212 PHA02688 ORF059 IMV protein VP 31.3 77 0.0017 31.5 4.7 45 309-354 114-159 (323)
213 PF02485 Branch: Core-2/I-Bran 29.5 1.9E+02 0.0041 27.3 7.2 106 223-336 1-115 (244)
214 PF05297 Herpes_LMP1: Herpesvi 29.0 18 0.0004 35.1 0.0 13 144-157 117-129 (381)
215 cd01452 VWA_26S_proteasome_sub 28.8 3.4E+02 0.0073 24.9 8.3 28 312-339 108-135 (187)
216 PHA01631 hypothetical protein 28.4 27 0.00058 31.2 0.9 18 310-327 70-87 (176)
217 PF11119 DUF2633: Protein of u 28.0 72 0.0016 23.4 2.9 35 32-66 1-35 (59)
218 COG2266 GTP:adenosylcobinamide 27.3 3.3E+02 0.0071 24.8 7.6 89 228-337 23-112 (177)
219 COG1083 NeuA CMP-N-acetylneura 27.0 5.4E+02 0.012 24.4 9.1 102 234-349 29-134 (228)
220 PF01128 IspD: 2-C-methyl-D-er 26.8 4.8E+02 0.01 24.6 9.2 91 231-338 26-119 (221)
221 PF03213 Pox_P35: Poxvirus P35 26.4 1E+02 0.0022 30.6 4.6 45 309-354 116-161 (325)
222 TIGR03501 gamma_C_targ gammapr 25.9 89 0.0019 18.9 2.5 21 54-74 3-23 (26)
223 KOG0799 Branching enzyme [Carb 25.6 7.9E+02 0.017 25.9 11.4 108 222-337 104-219 (439)
224 PLN00176 galactinol synthase 24.9 3.7E+02 0.0081 27.2 8.4 18 309-326 110-127 (333)
225 cd06914 GT8_GNT1 GNT1 is a fun 24.9 4.3E+02 0.0092 26.0 8.7 18 309-326 89-106 (278)
226 PF05817 Ribophorin_II: Oligos 24.3 2.5E+02 0.0055 31.1 7.6 28 140-167 587-614 (636)
227 cd02537 GT8_Glycogenin Glycoge 24.0 5.2E+02 0.011 24.4 9.1 85 234-327 14-105 (240)
228 PF05673 DUF815: Protein of un 23.9 5.3E+02 0.011 24.9 8.8 80 234-324 37-117 (249)
229 PF10138 vWA-TerF-like: vWA fo 23.6 6E+02 0.013 23.7 9.1 92 231-336 84-187 (200)
230 PF03129 HGTP_anticodon: Antic 23.4 2E+02 0.0044 22.4 5.2 59 255-321 4-62 (94)
231 PRK00725 glgC glucose-1-phosph 22.8 6.5E+02 0.014 26.1 10.2 105 226-338 40-154 (425)
232 PF14097 SpoVAE: Stage V sporu 22.4 5.9E+02 0.013 23.1 10.3 92 255-353 2-94 (180)
233 COG1207 GlmU N-acetylglucosami 22.0 8.1E+02 0.018 25.8 10.1 112 219-347 19-133 (460)
234 TIGR02091 glgC glucose-1-phosp 21.6 2.5E+02 0.0055 28.2 6.8 105 226-338 23-136 (361)
235 TIGR01479 GMP_PMI mannose-1-ph 21.5 3.7E+02 0.0081 28.5 8.2 99 227-335 27-128 (468)
236 PF12270 Cyt_c_ox_IV: Cytochro 21.2 4.5E+02 0.0097 22.9 7.0 66 52-120 35-107 (137)
237 PF08471 Ribonuc_red_2_N: Clas 21.1 22 0.00049 28.5 -0.9 21 32-59 46-66 (93)
238 PF09623 Cas_NE0113: CRISPR-as 21.1 3E+02 0.0064 26.2 6.5 47 224-270 3-50 (224)
239 cd02507 eIF-2B_gamma_N_like Th 21.1 6.3E+02 0.014 23.2 8.9 98 226-334 25-124 (216)
240 PF04724 Glyco_transf_17: Glyc 20.9 9E+02 0.02 24.7 12.5 36 309-345 176-211 (356)
241 PRK13389 UTP--glucose-1-phosph 20.8 8.2E+02 0.018 24.1 10.3 103 226-338 33-161 (302)
242 PF14979 TMEM52: Transmembrane 20.0 3.1E+02 0.0068 24.1 5.7 32 220-251 61-92 (154)
No 1
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=377.36 Aligned_cols=315 Identities=26% Similarity=0.401 Sum_probs=239.0
Q ss_pred hhhHhHHHHHHHHHHHHhhHhhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCC
Q 011596 141 PLAIKGAFDLLYSSWVLVRVHYLAPPLQFLAN-ACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGF 219 (482)
Q Consensus 141 ~~~~~~~~~~~y~~w~~~r~~~~~~~l~~~~~-~~~~lf~i~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 219 (482)
+.++..+...+|++| |...+++.-..+.. +.+++++...+..+...++++.......++. ... +...+.
T Consensus 189 l~~l~~~~~~rY~~W---R~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~-~~~------~~~~~~ 258 (852)
T PRK11498 189 LIVLSLTVSCRYIWW---RYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQP-VPL------PKDMSL 258 (852)
T ss_pred HHHHHHHHHHHHHHH---HHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-CCC------CcccCC
Confidence 445666778999999 66777765433322 3344555666666666666665443222211 110 111225
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 220 ~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
.|+|+|+||+|||+ +.+++++.++++||||+++++|+|+||+++|++.++++ +.++ .|..++++.|+|++
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-------~~~v--~yI~R~~n~~gKAG 329 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-------EVGV--KYIARPTHEHAKAG 329 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-------HCCc--EEEEeCCCCcchHH
Confidence 79999999999998 67889999999999999899999999999999988776 3344 45566777888999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCC--hHHHHHhh--hhhhhhhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN--LLTRLQDI--NLSFHFEVE 374 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~--~~~~~~~~--~~~~~~~~~ 374 (482)
|+|.|++ .+++|||+++|||++++||+|++++..|.+||++++||+++.+.|.+.- ........ +....+...
T Consensus 330 nLN~aL~---~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~i 406 (852)
T PRK11498 330 NINNALK---YAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLV 406 (852)
T ss_pred HHHHHHH---hCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHH
Confidence 9999999 5899999999999999999999999998879999999999888775421 01111110 111112222
Q ss_pred hhhccccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhh
Q 011596 375 QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWH 454 (482)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~ 454 (482)
+...... +...++|+++++||++++++|||+++.++||++++.+++++||++.|++++.+.++.|+|+.++.+||.||+
T Consensus 407 q~g~~~~-~a~~~~Gs~aviRReaLeeVGGfd~~titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~~QR~RWa 485 (852)
T PRK11498 407 QDGNDMW-DATFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWA 485 (852)
T ss_pred HhHHHhh-cccccccceeeeEHHHHHHhcCCCCCccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHHHHHHHHH
Confidence 2222211 222368999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhChhhhhcCcchhhcc
Q 011596 455 SGPMQLFRLCLPDIIRAKVYILSNT 479 (482)
Q Consensus 455 ~G~~q~~~~~~~~i~~s~~~~~~k~ 479 (482)
+|.+|+++++.| +.++++++.+|+
T Consensus 486 rG~lQi~r~~~p-l~~~gL~~~qRl 509 (852)
T PRK11498 486 RGMVQIFRLDNP-LTGKGLKLAQRL 509 (852)
T ss_pred HHHHHHHHHhCh-hccCCCCHHHHH
Confidence 999999998765 556788888876
No 2
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=6e-41 Score=367.98 Aligned_cols=320 Identities=31% Similarity=0.407 Sum_probs=236.9
Q ss_pred chhhHhHHHHHHHHHHHHhhHhhccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCC
Q 011596 140 SPLAIKGAFDLLYSSWVLVRVHYLAPPLQFLAN-ACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKG 218 (482)
Q Consensus 140 ~~~~~~~~~~~~y~~w~~~r~~~~~~~l~~~~~-~~~~lf~i~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 218 (482)
+++.+..+...+|++| |...+++.-..+.. +.+.+++...+..+...++++....+..++. ... +.+.+
T Consensus 59 ~~~~~~~~~~~~y~~w---r~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~-~~~------~~~~~ 128 (713)
T TIGR03030 59 LLLVLSVFISLRYLWW---RLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTP-VPL------PLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHh---heeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-cCC------CCCcc
Confidence 4667777778999999 66677765333322 3445555665666666666665443221211 111 11223
Q ss_pred CCCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHH--------------HHHHHHHHHHhhhCCCe
Q 011596 219 FFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTA--------------QTLIKEEVLKWQEAGAN 283 (482)
Q Consensus 219 ~~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t--------------~~~~~~~~~~~~~~~v~ 283 (482)
..|+|+|+||+|||+ +.+++|+.++++|+||.++++|+|+||+|+|.+ .+.+++..+ +.+
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~---~~~-- 203 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR---KLG-- 203 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH---HcC--
Confidence 689999999999998 566889999999999988899999999987765 122333333 334
Q ss_pred EEEEeccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCC---ChH-
Q 011596 284 IVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE---NLL- 359 (482)
Q Consensus 284 vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~---~~~- 359 (482)
+.|..++++.|+|++|+|.|++ .+++|||+++|||++++||+|++++..|.+||++++||+++.+.|.+. +..
T Consensus 204 v~yi~r~~n~~~KAgnLN~al~---~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~ 280 (713)
T TIGR03030 204 VNYITRPRNVHAKAGNINNALK---HTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGT 280 (713)
T ss_pred cEEEECCCCCCCChHHHHHHHH---hcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHH
Confidence 4556677788889999999999 589999999999999999999999999987899999999988776542 111
Q ss_pred -HHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceeccc
Q 011596 360 -TRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCE 438 (482)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~ 438 (482)
....+.. ...+...+...... +...++|+++++||++++++|||++..++||++++.+++++||++.|++++.++++
T Consensus 281 ~~~~~~e~-~~f~~~i~~g~~~~-~~~~~~Gs~~~iRR~al~~iGGf~~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~ 358 (713)
T TIGR03030 281 FRRMPNEN-ELFYGLIQDGNDFW-NAAFFCGSAAVLRREALDEIGGIAGETVTEDAETALKLHRRGWNSAYLDRPLIAGL 358 (713)
T ss_pred HHHhhhHH-HHHHHHHHHHHhhh-CCeeecCceeEEEHHHHHHcCCCCCCCcCcHHHHHHHHHHcCCeEEEecccccccc
Confidence 1111111 11111122221211 22236799999999999999999998999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHhhhhhhHHHHHHhChhhhhcCcchhhccc
Q 011596 439 LPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKVYILSNTS 480 (482)
Q Consensus 439 ~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~~s~~~~~~k~~ 480 (482)
.|+|++++.+||.||++|.+|+++...| ++++++++.+|+.
T Consensus 359 ~p~sl~~~~~Qr~RWa~G~~qi~~~~~p-l~~~gl~~~qrl~ 399 (713)
T TIGR03030 359 APETLSGHIGQRIRWAQGMMQIFRLDNP-LLKRGLSFPQRLC 399 (713)
T ss_pred CCCCHHHHHHHHHHHhcChHHHHhhhCc-cccCCCCHHHHHH
Confidence 9999999999999999999999987644 5566888888763
No 3
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=5.1e-38 Score=328.98 Aligned_cols=241 Identities=21% Similarity=0.316 Sum_probs=205.8
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|.|||+||+|||++.+++|++|+++|+||+ ++|+|+||+|+|++.+.+++..++++ +++++ +..++. ||++
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~--~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv--~~~~n~-Gka~ 145 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQTYTN--IEVIAINDGSSDDTAQVLDALLAEDP--RLRVI--HLAHNQ-GKAI 145 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCC--eEEEEEECCCCccHHHHHHHHHHhCC--CEEEE--EeCCCC-CHHH
Confidence 47899999999999999999999999999996 78999999999999988887766432 34444 333344 4999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
|+|.|++ .+++||++++|||++++||++++++..|.++|++++|++.....+. .++.++.+..++...........
T Consensus 146 AlN~gl~---~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~ 221 (444)
T PRK14583 146 ALRMGAA---AARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTR-STLIGRVQVGEFSSIIGLIKRTQ 221 (444)
T ss_pred HHHHHHH---hCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCC-CcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999 5899999999999999999999999999888999999998876665 46677777666554444444444
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhH
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~ 458 (482)
...+..++++|+++++||++++++|||+++.++||.+++.++..+||++.|.|++.++++.|+|++++.+||.||++|.+
T Consensus 222 ~~~g~~~~~sG~~~~~rr~al~~vGg~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~~ 301 (444)
T PRK14583 222 RVYGQVFTVSGVVAAFRRRALADVGYWSPDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGGA 301 (444)
T ss_pred HHhCCceEecCceeEEEHHHHHHcCCCCCCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcHH
Confidence 44445666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhChhhhh
Q 011596 459 QLFRLCLPDIIR 470 (482)
Q Consensus 459 q~~~~~~~~i~~ 470 (482)
|.+.+++..+.+
T Consensus 302 ~~~~~~~~~~~~ 313 (444)
T PRK14583 302 EVFLKNMFKLWR 313 (444)
T ss_pred HHHHHHHHHHhC
Confidence 999887776654
No 4
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=3.6e-38 Score=328.43 Aligned_cols=242 Identities=24% Similarity=0.390 Sum_probs=205.1
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|+|+|+||+|||++.+++|++|+.+|+||+ ++|+|+||+|+|++.+.+++..++++ ++.+.+..++.| |++
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~--~eiiVvdD~s~d~t~~~l~~~~~~~~----~v~~i~~~~n~G-ka~ 124 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLALRYPN--YEVIAINDGSSDNTGEILDRLAAQIP----RLRVIHLAENQG-KAN 124 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhCCCCC--eEEEEEECCCCccHHHHHHHHHHhCC----cEEEEEcCCCCC-HHH
Confidence 57899999999999999999999999999996 77999999999999988887665432 344444444555 999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
|+|.|++ .+++||++++|+|+.++||+|++++..|+++|++++|++.....+. .++..+.+..++...........
T Consensus 125 aln~g~~---~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (420)
T PRK11204 125 ALNTGAA---AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNR-STLLGRIQVGEFSSIIGLIKRAQ 200 (420)
T ss_pred HHHHHHH---HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccc-hhHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999 5899999999999999999999999999888999999998877665 45666666555544333333333
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhH
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~ 458 (482)
...+...+++|+++++||++++++|||++..++||.+++.+++++||++.|.|++.++++.|+|++++.+||.||++|.+
T Consensus 201 ~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G~~ 280 (420)
T PRK11204 201 RVYGRVFTVSGVITAFRKSALHEVGYWSTDMITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQGGA 280 (420)
T ss_pred HHhCCceEecceeeeeeHHHHHHhCCCCCCcccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcCHH
Confidence 44445556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhChhhhhc
Q 011596 459 QLFRLCLPDIIRA 471 (482)
Q Consensus 459 q~~~~~~~~i~~s 471 (482)
|.++++.+..++.
T Consensus 281 ~~l~~~~~~~~~~ 293 (420)
T PRK11204 281 EVLLKNFRRLWRW 293 (420)
T ss_pred HHHHHHHHHhcCc
Confidence 9999887766653
No 5
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=9.5e-38 Score=298.95 Aligned_cols=232 Identities=50% Similarity=0.887 Sum_probs=194.9
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccH
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~al 300 (482)
|+||||||+|||++.|.++|+|+++|+||.++++|+|+|| |+|.+.+++++...++...++++.+..+..+.|+|++++
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 5799999999999999999999999999988889999998 556666777777666655567777766666778899999
Q ss_pred HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccc
Q 011596 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (482)
Q Consensus 301 n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|.|++ .+++|||+++|+|+.++|++|+++...+. +|++++|++.....+.+.++..+.+.+.+...+...+.....
T Consensus 80 n~g~~---~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 80 AEGMK---VAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHH---hCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 99999 68999999999999999999999887775 699999999887777777777776665444333333222222
Q ss_pred cccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhh
Q 011596 381 FINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (482)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~ 457 (482)
.....+++|+++++||++++++|||++....||++++.|+..+||++.|.|++.++++.|+|++++.+||.||++|.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNHDTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCCCcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhccCC
Confidence 22334468889999999999999999888899999999999999999999999999999999999999999999984
No 6
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=3.8e-36 Score=314.12 Aligned_cols=251 Identities=16% Similarity=0.247 Sum_probs=197.3
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|.|||+||+|||++.+.+||+|+.+|+||+++++|+|+||+|+|++.+++++..++++ ++.+++. + .++||++
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~--~-~~~Gka~ 121 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYM--N-SDQGKAK 121 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEe--C-CCCCHHH
Confidence 579999999999999999999999999999998899999999999999998877665433 3444322 2 3456999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecC----CCC----hHHHHHhhhhhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNK----DEN----LLTRLQDINLSFH 370 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~----~~~----~~~~~~~~~~~~~ 370 (482)
|+|.|++ .+++|||+++|+|+.++||++++++..|.++|++++++|....... ..+ +..+.+..++...
T Consensus 122 AlN~gl~---~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 198 (439)
T TIGR03111 122 ALNAAIY---NSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQA 198 (439)
T ss_pred HHHHHHH---HccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHH
Confidence 9999999 5889999999999999999999999999888999999887643211 011 1111111222211
Q ss_pred hhhhhhhccccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHH-HCCCcEEEeccceecccCCcCHHHHHHH
Q 011596 371 FEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAH-LRGWKFIFLNDVECQCELPESYEAYRKQ 449 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~-~~G~ki~~~~~~~~~~~~p~t~~~~~~q 449 (482)
+...+...+.....+.++|+++++||++++++|||++..++||.+++.++. ..|+++.|+|++.++++.|+|++++.+|
T Consensus 199 ~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~~~Q 278 (439)
T TIGR03111 199 FLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKLYTQ 278 (439)
T ss_pred HHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHHHHH
Confidence 111111222223445578999999999999999999989999999999996 4699999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHhChhhhhcCcchhh
Q 011596 450 QHRWHSGPMQLFRLCLPDIIRAKVYILS 477 (482)
Q Consensus 450 r~RW~~G~~q~~~~~~~~i~~s~~~~~~ 477 (482)
|.||.+|.+|.++.+.+...++...+.+
T Consensus 279 R~RW~rG~~qv~~~~~~~~~~~~~~~~~ 306 (439)
T TIGR03111 279 RQRWQRGELEVSHMFFESANKSIKGFFS 306 (439)
T ss_pred HHHHhccHHHHHHHHHhhhhhchhhhhh
Confidence 9999999999998877655555444433
No 7
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=5.1e-35 Score=315.76 Aligned_cols=296 Identities=20% Similarity=0.189 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCCCCeEEEEeecCCch-----HHHHHHHHHHHhCC
Q 011596 173 ACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEK-----EVYQQSIAAVCNLD 247 (482)
Q Consensus 173 ~~~~lf~i~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~P~VsViIP~yne~-----~~l~~tL~Sll~q~ 247 (482)
++.++|....+......+|++.... ++.+.....+...+ ......|+|+|+||+|||+ +.++.+++|+.+|+
T Consensus 79 lf~~~~~w~~~~~~~a~~g~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~ 155 (691)
T PRK05454 79 LFALLFAWISLGFWTALMGFLQLLR-GRDKYSISASAAGD--PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATG 155 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cCCcccCCcccccC--CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 3344555555555666667654432 22222111110011 1112578999999999998 36899999999999
Q ss_pred CCCCceEEEEEcCCCCHHHHHHH----HHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCceEEEEEcCCCC
Q 011596 248 WPKSKILIQVLDDSDDPTAQTLI----KEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQ 323 (482)
Q Consensus 248 yp~~~~~IiVvDdssdd~t~~~~----~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~ 323 (482)
|++ +++|+|+||++|+.+...- +++.++++ .+.++.|+++.+|.|.|++|+|.+++.. ..++||++++|||++
T Consensus 156 ~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~-~~~~i~yr~R~~n~~~KaGNl~~~~~~~-~~~~eyivvLDADs~ 232 (691)
T PRK05454 156 HGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELG-GEGRIFYRRRRRNVGRKAGNIADFCRRW-GGAYDYMVVLDADSL 232 (691)
T ss_pred CCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCCcEEEEECCcCCCccHHHHHHHHHhc-CCCcCEEEEEcCCCC
Confidence 975 6899999999999876532 23344433 2568889989999999999999999842 367899999999999
Q ss_pred CChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcc-ccccccccccceEeeeHHHHHHc
Q 011596 324 PNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNG-VFINFFGFNGTAGVWRIKALEDS 402 (482)
Q Consensus 324 ~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~Rr~~l~~i 402 (482)
+++|++.+++..|+.||++|+||+.+...|.+ +++++++.+....+......... +..+...+.|++.++|++++.++
T Consensus 233 m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~-slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~ 311 (691)
T PRK05454 233 MSGDTLVRLVRLMEANPRAGLIQTLPVAVGAD-TLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEH 311 (691)
T ss_pred CCHHHHHHHHHHHhhCcCEEEEeCCccCcCCC-CHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHh
Confidence 99999999999998899999999998888874 88999887644333222211111 11122337899999999999986
Q ss_pred C---------CCCCCCchhHHHHHHHHHHCCCcEEEecc-ceecccCCcCHHHHHHHHHhhhhhhHHHHHHhChhhhhcC
Q 011596 403 G---------GWMERTTVEDMDIAVRAHLRGWKFIFLND-VECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAK 472 (482)
Q Consensus 403 G---------gf~~~~~~ED~~l~~rl~~~G~ki~~~~~-~~~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~~s~ 472 (482)
+ +|..+.++||++++.+++++||++.|+|+ ..++++.|+|+.++.+||.||++|++|.++.. .+.+
T Consensus 312 ~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~l----~~~g 387 (691)
T PRK05454 312 CGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSYEELPPNLLDELKRDRRWCQGNLQHLRLL----LAKG 387 (691)
T ss_pred cCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccccccccCCCCHHHHHHHHHHHHhchHHHHHHH----HhcC
Confidence 4 45566889999999999999999999999 56899999999999999999999999987653 2344
Q ss_pred cchhhcc
Q 011596 473 VYILSNT 479 (482)
Q Consensus 473 ~~~~~k~ 479 (482)
+++..|.
T Consensus 388 l~~~~R~ 394 (691)
T PRK05454 388 LHPVSRL 394 (691)
T ss_pred CCHHHHH
Confidence 5555543
No 8
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=100.00 E-value=6.5e-36 Score=288.17 Aligned_cols=238 Identities=26% Similarity=0.395 Sum_probs=190.9
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccH
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~al 300 (482)
|.|||+||+|||++.+.++|+|+++|+||++.++|+|+||+|+|.+.+++++... ....+++..... .+.||+.++
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~---~~~~~i~~~~~~-~~~G~~~a~ 76 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL---PSIFRVVVVPPS-QPRTKPKAC 76 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc---CCCeeEEEecCC-CCCchHHHH
Confidence 6899999999999999999999999999987899999999999999888775422 123555554333 334599999
Q ss_pred HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcC-CCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcc
Q 011596 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDN-EELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNG 379 (482)
Q Consensus 301 n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~-p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (482)
|.|++ .+++|||+++|+|++++|+++.+++..|.++ ++++++++.....+...++..+.....+...+........
T Consensus 77 n~g~~---~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 77 NYALA---FARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHH---hcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6899999999999999999999999999764 8999999987777665666655444333222211111111
Q ss_pred ccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhHH
Q 011596 380 VFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQ 459 (482)
Q Consensus 380 ~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~q 459 (482)
.......++|+++++||++++++|||++....||++++.|+..+||++.+++.+ ++++.|+|++.+.+||.||.+|.+|
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~eD~~l~~rl~~~G~r~~~~~~~-~~~~~~~~~~~~~~q~~Rw~~g~~~ 232 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDPFNVTEDADLGLRLARAGYRTGVLNST-TLEEANNALGNWIRQRSRWIKGYMQ 232 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCcccchhhHHHHHHHHHCCceEEEeccc-ccccCcHhHHHHHHHHHHHhccHHH
Confidence 122333467889999999999999999888899999999999999999999875 4788999999999999999999999
Q ss_pred HHHHhCh
Q 011596 460 LFRLCLP 466 (482)
Q Consensus 460 ~~~~~~~ 466 (482)
+++.+.+
T Consensus 233 ~~~~~~~ 239 (241)
T cd06427 233 TWLVHMR 239 (241)
T ss_pred HHHHHhh
Confidence 9987643
No 9
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.9e-34 Score=279.12 Aligned_cols=233 Identities=21% Similarity=0.272 Sum_probs=188.1
Q ss_pred EEEEeecCCchH-HHHHHHHHHHh----CCCCCCceEEEEEcCCCCHHHHHH----HHHHHHHhhhCCCeEEEEeccCCC
Q 011596 223 VLVQIPMCNEKE-VYQQSIAAVCN----LDWPKSKILIQVLDDSDDPTAQTL----IKEEVLKWQEAGANIVYRHRILRD 293 (482)
Q Consensus 223 VsViIP~yne~~-~l~~tL~Sll~----q~yp~~~~~IiVvDdssdd~t~~~----~~~~~~~~~~~~v~vv~~~~~~~~ 293 (482)
|||+||+|||+. .+.++|.++++ |+|++ +++|+|+||++|+..... +.++.+++++ ++++++.+++++.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~-~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLAD-HFDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcC-ceEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCC
Confidence 699999999994 58999998875 77733 488999999999875432 2234555554 7889999999999
Q ss_pred CCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhh
Q 011596 294 GYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEV 373 (482)
Q Consensus 294 g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 373 (482)
|.|++|+|.++... .+++|||+++|||+.++||+|.++++.|..||++++||+++.+.|.+ +++++++.++.......
T Consensus 79 g~Kag~l~~~~~~~-~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~-~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 79 GRKAGNIADFCRRW-GSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE-TLFARLQQFANRLYGPV 156 (254)
T ss_pred CccHHHHHHHHHHh-CCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999731 26889999999999999999999999998789999999999988874 78888887664333332
Q ss_pred hhhhccc-cccccccccceEeeeHHHHHHc---------CCCCCCCchhHHHHHHHHHHCCCcEEEeccce-ecccCCcC
Q 011596 374 EQQVNGV-FINFFGFNGTAGVWRIKALEDS---------GGWMERTTVEDMDIAVRAHLRGWKFIFLNDVE-CQCELPES 442 (482)
Q Consensus 374 ~~~~~~~-~~~~~~~~G~~~~~Rr~~l~~i---------Ggf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~-~~~~~p~t 442 (482)
....... ......+.|+++++||++++++ |+|..+.++||+++++++..+||++.|.|++. ++++.|++
T Consensus 157 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~p~~ 236 (254)
T cd04191 157 FGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEECPPT 236 (254)
T ss_pred HHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeECCCC
Confidence 2222111 1122336799999999999884 34555678999999999999999999999987 58899999
Q ss_pred HHHHHHHHHhhhhhhHH
Q 011596 443 YEAYRKQQHRWHSGPMQ 459 (482)
Q Consensus 443 ~~~~~~qr~RW~~G~~q 459 (482)
+.++++||.||++|.+|
T Consensus 237 ~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 237 LIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 99999999999999987
No 10
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.5e-34 Score=299.72 Aligned_cols=236 Identities=30% Similarity=0.504 Sum_probs=201.9
Q ss_pred CCeEEEEeecCCchH-HHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 220 FPMVLVQIPMCNEKE-VYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 220 ~P~VsViIP~yne~~-~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
.|+|+|+||+|||++ ++++|+.|+.+|+||+ ++|+|+||+++|.+.+++++...+++ ..+++++. ..++++|++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~--~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYP--EKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHHHhhcC-cceEEEec--cccCccchH
Confidence 599999999999996 9999999999999998 77999999999999999998877553 23444311 345667999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC--CChHHHHHhhhhhhhhhhhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD--ENLLTRLQDINLSFHFEVEQQ 376 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~--~~~~~~~~~~~~~~~~~~~~~ 376 (482)
++|.|+. .+++|+|+++|||+.++||+|.++++.|.+ ++.+++++.....+.. .+++++.+.+++.........
T Consensus 128 al~~~l~---~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (439)
T COG1215 128 ALNNGLK---RAKGDVVVILDADTVPEPDALRELVSPFED-PPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLR 203 (439)
T ss_pred HHHHHHh---hcCCCEEEEEcCCCCCChhHHHHHHhhhcC-CCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhh
Confidence 9999999 578999999999999999999999999996 5555666666555554 678888888877665555444
Q ss_pred hccccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhh
Q 011596 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (482)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G 456 (482)
.....+....+.|++.++||++++++|||.+..++||.+++.+++.+||++.|++++.++++.|+|+.++++||.||++|
T Consensus 204 ~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g 283 (439)
T COG1215 204 AASKGGLISFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARG 283 (439)
T ss_pred hhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcc
Confidence 44444456668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHh
Q 011596 457 PMQLFRLC 464 (482)
Q Consensus 457 ~~q~~~~~ 464 (482)
.+|.+..+
T Consensus 284 ~~~~~~~~ 291 (439)
T COG1215 284 GLQVLLLH 291 (439)
T ss_pred cceeeehh
Confidence 99998765
No 11
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=1.4e-33 Score=289.06 Aligned_cols=234 Identities=18% Similarity=0.252 Sum_probs=182.2
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|+|||+||+|||++.+++||+|+++|+||+ +||+|+||+++|.+.+++++..+++++..++++....+.+.++|.+
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~ 116 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVS 116 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHH
Confidence 47899999999999999999999999999997 7788999999999999998888877655555553222223335888
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
|++.+++ .+++|+++++|+|+.++||+|++++..|+ +|++++|++..... ...++..+.........+.......
T Consensus 117 ~l~~~~~---~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 191 (373)
T TIGR03472 117 NLINMLP---HARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYRGR-PVPGFWSRLGAMGINHNFLPSVMVA 191 (373)
T ss_pred HHHHHHH---hccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEeccccCC-CCCCHHHHHHHHHhhhhhhHHHHHH
Confidence 9988888 68999999999999999999999999997 69999999865432 2245555544332211111100011
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCC--CCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhh
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~--~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G 456 (482)
........+.|+++++||++++++|||++ ...+||.+++.++.++|+++.+.+++..++..++|++++++|+.||.++
T Consensus 192 ~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW~r~ 271 (373)
T TIGR03472 192 RALGRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRWSRT 271 (373)
T ss_pred HhccCCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHHHhh
Confidence 11111222579999999999999999975 4678999999999999999999999888888889999999999999866
Q ss_pred hHH
Q 011596 457 PMQ 459 (482)
Q Consensus 457 ~~q 459 (482)
...
T Consensus 272 ~~~ 274 (373)
T TIGR03472 272 IRA 274 (373)
T ss_pred hhc
Confidence 554
No 12
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=1.4e-33 Score=269.42 Aligned_cols=231 Identities=33% Similarity=0.496 Sum_probs=184.9
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcccc
Q 011596 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (482)
Q Consensus 221 P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~a 299 (482)
|+|||+||+|||+ +.++++|+|+++|+||++.++|+|+||+|+|.+.+++++...++ ++.+.....+.|+|+++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-----GYRYLTRPDNRHAKAGN 75 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-----CceEEEeCCCCCCcHHH
Confidence 6799999999986 78999999999999998778899999999999998888664422 23333455667789999
Q ss_pred HHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCC-hHHHHHhhhhhhhhhhhhhhc
Q 011596 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 300 ln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~ 378 (482)
+|.|++ .+++|||+++|+|+.++|++|++++..+.++++++++++.....+.+.. +....................
T Consensus 76 ~n~~~~---~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T cd06421 76 LNNALA---HTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGR 152 (234)
T ss_pred HHHHHH---hCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 5799999999999999999999999999877999999998766655432 111111111111111111111
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhH
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~ 458 (482)
.. .+...+.|+++++|+++++++|||++....||.+++.++.++||++.|.|++.++++.|.++..+.+|+.||..|.+
T Consensus 153 ~~-~~~~~~~g~~~~~r~~~~~~ig~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~~ 231 (234)
T cd06421 153 DR-WGAAFCCGSGAVVRREALDEIGGFPTDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGML 231 (234)
T ss_pred hh-cCCceecCceeeEeHHHHHHhCCCCccceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCCe
Confidence 11 12333679999999999999999998888999999999999999999999999999999999999999999999988
Q ss_pred HH
Q 011596 459 QL 460 (482)
Q Consensus 459 q~ 460 (482)
+.
T Consensus 232 ~~ 233 (234)
T cd06421 232 QI 233 (234)
T ss_pred ee
Confidence 74
No 13
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=100.00 E-value=4.6e-33 Score=266.82 Aligned_cols=233 Identities=27% Similarity=0.496 Sum_probs=181.0
Q ss_pred EEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHH-HHHHHHHHHhhhCCCeEEEEeccCCCCCccccHH
Q 011596 224 LVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQ-TLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (482)
Q Consensus 224 sViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~-~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln 301 (482)
||+||+|||+ +.++++++|+.+|+||+ ++|+|+||+++|.+. +.+++...++ +.++.+....++.|+|++++|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n 75 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALN 75 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHH
Confidence 6999999998 89999999999999987 678899998877753 5555555432 234444444556677899999
Q ss_pred HHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccc
Q 011596 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVF 381 (482)
Q Consensus 302 ~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
.|++.+ ..++|||+++|+|+.++|++|.+++..++ ++++++|++.....+...+.+.+.....+...+...... ...
T Consensus 76 ~g~~~a-~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (236)
T cd06435 76 YALERT-APDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS-RNE 152 (236)
T ss_pred HHHHhc-CCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc-ccc
Confidence 999952 13489999999999999999999999997 699999998765555444444433222221111111111 111
Q ss_pred ccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhHHHH
Q 011596 382 INFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLF 461 (482)
Q Consensus 382 ~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~q~~ 461 (482)
.......|+++++||++++++|||++....||.+++.|+.++||++.++|++.+++..|.++.++.+|+.||..|.+|.+
T Consensus 153 ~~~~~~~g~~~~~rr~~~~~iGgf~~~~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~~~ 232 (236)
T cd06435 153 RNAIIQHGTMCLIRRSALDDVGGWDEWCITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQIL 232 (236)
T ss_pred cCceEEecceEEEEHHHHHHhCCCCCccccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhhhh
Confidence 12233579999999999999999998888999999999999999999999999999999999999999999999999998
Q ss_pred HHh
Q 011596 462 RLC 464 (482)
Q Consensus 462 ~~~ 464 (482)
++|
T Consensus 233 ~~~ 235 (236)
T cd06435 233 KKH 235 (236)
T ss_pred hcc
Confidence 876
No 14
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=2.6e-32 Score=285.47 Aligned_cols=285 Identities=18% Similarity=0.178 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCCCCeEEEEeecCCchHHHHHHHHHHH-hCC
Q 011596 169 FLANACIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAVC-NLD 247 (482)
Q Consensus 169 ~~~~~~~~lf~i~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~P~VsViIP~yne~~~l~~tL~Sll-~q~ 247 (482)
.+..+..+++++..++-+++-+.++.....|........ +.........|+++|+||+|||+++|.++|+|++ +++
T Consensus 17 ~~~~~~~~~~~~~~~ddl~id~~y~~~~~~r~~~~~~~~---~~~~l~~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ld 93 (504)
T PRK14716 17 VVLLVVAVLILLSGLDDLFIDAVYLARRLYRRRSRIPRL---SLATLRSVPEKRIAIFVPAWREADVIGRMLEHNLATLD 93 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---ChhhcccCCCCceEEEEeccCchhHHHHHHHHHHHcCC
Confidence 344555666777778888776666544443331111111 1111112257899999999999999999999965 689
Q ss_pred CCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcc---c---CCceEEEEEcCC
Q 011596 248 WPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSY---V---KDYEFVAIFDAD 321 (482)
Q Consensus 248 yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~---~---a~~d~Vl~lDaD 321 (482)
||+ ++|+|+||++||.|.+.+++...+++. ++++..++. +..+|++|+|.+++.+. . .++|+|+++|||
T Consensus 94 Y~~--~eIiVv~d~ndd~T~~~v~~l~~~~p~--v~~vv~~~~-gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD 168 (504)
T PRK14716 94 YEN--YRIFVGTYPNDPATLREVDRLAARYPR--VHLVIVPHD-GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAE 168 (504)
T ss_pred CCC--eEEEEEECCCChhHHHHHHHHHHHCCC--eEEEEeCCC-CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCC
Confidence 975 789999999999988888887776653 554444333 33459999999997531 1 234999999999
Q ss_pred CCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCC-hHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHH
Q 011596 322 FQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDEN-LLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALE 400 (482)
Q Consensus 322 ~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~ 400 (482)
++++|++|+.+...+ ++.+++|.+....+...+ +.+.....++...+..........+...++.|+++++||++++
T Consensus 169 ~~v~Pd~Lr~~~~~~---~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 169 DVIHPLELRLYNYLL---PRHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred CCcCccHHHHHHhhc---CCCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 999999999877665 345688877665544333 2232222233222222222223333455678999999999999
Q ss_pred Hc-----CC-CCCCCchhHHHHHHHHHHCCCcEEEecccee---------------cccCCcCHHHHHHHHHhhhhhh-H
Q 011596 401 DS-----GG-WMERTTVEDMDIAVRAHLRGWKFIFLNDVEC---------------QCELPESYEAYRKQQHRWHSGP-M 458 (482)
Q Consensus 401 ~i-----Gg-f~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~---------------~~~~p~t~~~~~~qr~RW~~G~-~ 458 (482)
++ |+ |++++++||+++++++..+||++.|+|++.+ .++.|+|++++.+||.||+.|. +
T Consensus 246 ~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~ 325 (504)
T PRK14716 246 RLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAF 325 (504)
T ss_pred HHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhchHH
Confidence 97 33 9999999999999999999999999999853 3678999999999999999995 7
Q ss_pred HHHHHh
Q 011596 459 QLFRLC 464 (482)
Q Consensus 459 q~~~~~ 464 (482)
|..++.
T Consensus 326 Q~~~~~ 331 (504)
T PRK14716 326 QGWERL 331 (504)
T ss_pred hhHHhc
Confidence 876543
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=100.00 E-value=9.1e-35 Score=277.03 Aligned_cols=228 Identities=27% Similarity=0.449 Sum_probs=157.8
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccH
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~al 300 (482)
|+|+|+||+|||++.+.++|+|+++|+||+ ++|+|+||++++.+.+.+++..+.++..+++++...+..+.++|+.++
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~--~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~ 78 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPR--LEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARAL 78 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHT--EEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCC--eEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHH
Confidence 679999999999999999999999999965 889999999998888888888887775455555332212223699999
Q ss_pred HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccc
Q 011596 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (482)
Q Consensus 301 n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|.|++ ..++|+|+++|+|+.++|++|++++..| .+|++++|++.....+ +.++++.+....+.............
T Consensus 79 n~~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (228)
T PF13641_consen 79 NEALA---AARGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPVFPDN-DRNWLTRLQDLFFARWHLRFRSGRRA 153 (228)
T ss_dssp HHHHH---H---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEEEETT-CCCEEEE-TT--S-EETTTS-TT-B-
T ss_pred HHHHH---hcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeEeecC-CCCHHHHHHHHHHhhhhhhhhhhhcc
Confidence 99999 5789999999999999999999999999 4799999999886554 55665555444332222211222222
Q ss_pred cccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhh
Q 011596 381 FINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (482)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G 456 (482)
. +..+++|+++++|+++++++|||++....||.+++.++.++||++.|+|++.++++.|.+++++.+||.||.+|
T Consensus 154 ~-~~~~~~G~~~~~rr~~~~~~g~fd~~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 154 L-GVAFLSGSGMLFRRSALEEVGGFDPFILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ----S-B--TEEEEEHHHHHHH-S--SSSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH--
T ss_pred c-ceeeccCcEEEEEHHHHHHhCCCCCCCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccCcC
Confidence 2 34456899999999999999999998788999999999999999999999999999999999999999999987
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=100.00 E-value=1.1e-32 Score=257.39 Aligned_cols=193 Identities=22% Similarity=0.325 Sum_probs=166.1
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccH
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~al 300 (482)
|+|||+||+|||++.+.++|+|+++|+||+ ++|+||||+++|.+.+++++....++...++++...+..+.++|+.++
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNL 78 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHH
Confidence 679999999999999999999999999987 789999999999998988887776553334333222211222577889
Q ss_pred HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccc
Q 011596 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (482)
Q Consensus 301 n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|.|++ .+++||++++|+|+.++|++|++++..+. +|++++|++.
T Consensus 79 n~g~~---~a~~d~i~~~D~D~~~~~~~l~~l~~~~~-~~~~~~v~~~-------------------------------- 122 (196)
T cd02520 79 IKGYE---EARYDILVISDSDISVPPDYLRRMVAPLM-DPGVGLVTCL-------------------------------- 122 (196)
T ss_pred HHHHH---hCCCCEEEEECCCceEChhHHHHHHHHhh-CCCCCeEEee--------------------------------
Confidence 99999 68999999999999999999999999986 6889999876
Q ss_pred cccccccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhh
Q 011596 381 FINFFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (482)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G 456 (482)
...|+++++|+++++++|||++. .+.||++++.++..+||++.+.|++.++++.|.+++++++||.||.+.
T Consensus 123 -----~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 123 -----CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred -----cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHhcc
Confidence 25789999999999999999753 457999999999999999999999999999999999999999999864
No 17
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=100.00 E-value=1.3e-32 Score=265.97 Aligned_cols=205 Identities=21% Similarity=0.291 Sum_probs=172.9
Q ss_pred EEeecCCch-HHHHHHHHHHHhCCCC--------CCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCC
Q 011596 225 VQIPMCNEK-EVYQQSIAAVCNLDWP--------KSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (482)
Q Consensus 225 ViIP~yne~-~~l~~tL~Sll~q~yp--------~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~ 295 (482)
|+||+|||+ .+|+++|+|+++|+|| .++++|+|+|||++| .+.|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d--------------------------~~~g- 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK--------------------------KNRG- 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc--------------------------ccCc-
Confidence 689999997 8999999999999999 678999999999888 1222
Q ss_pred ccc-------cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhh
Q 011596 296 KAG-------NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLS 368 (482)
Q Consensus 296 Ka~-------aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~ 368 (482)
|+. ++|.++. .+++|||+++|+|+.++|++|++++..|..+|++++|++.....+...+++...+.+++.
T Consensus 54 k~~~~~~~~~~~~~~~~---~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~ 130 (244)
T cd04190 54 KRDSQLWFFNYFCRVLF---PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYA 130 (244)
T ss_pred chHHHHHHHHHHHHHhh---cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehh
Confidence 443 3445554 579999999999999999999999999977899999999988888777888888888776
Q ss_pred hhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCC--------------------CCchhHHHHHHHHHHCCCcEE
Q 011596 369 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME--------------------RTTVEDMDIAVRAHLRGWKFI 428 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~--------------------~~~~ED~~l~~rl~~~G~ki~ 428 (482)
..........+..+...++.|+++++|++++++.|++.. ..++||.+++.++..+||++.
T Consensus 131 ~~~~~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~ 210 (244)
T cd04190 131 ISHWLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRK 210 (244)
T ss_pred hhhhhcccHHHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccE
Confidence 544433444455555667899999999999999876533 136899999999999999999
Q ss_pred E--eccceecccCCcCHHHHHHHHHhhhhhhHH
Q 011596 429 F--LNDVECQCELPESYEAYRKQQHRWHSGPMQ 459 (482)
Q Consensus 429 ~--~~~~~~~~~~p~t~~~~~~qr~RW~~G~~q 459 (482)
| .|++.++++.|+|++++++||.||.+|.+.
T Consensus 211 ~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 211 YLYVPGAVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred EEEecccEEEEECCCCHHHHHHHhHhhhccccc
Confidence 9 999999999999999999999999999763
No 18
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.97 E-value=3.6e-30 Score=279.62 Aligned_cols=285 Identities=20% Similarity=0.189 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCCCCccccCCCCCCCeEEEEeecCCchHHHHHHHHHHH-h
Q 011596 170 LANACIVLFLIQSLDRLILCLGCFWIRFKRI---KPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAVC-N 245 (482)
Q Consensus 170 ~~~~~~~lf~i~~~~~l~~~~~~~~~~~~r~---~~~~~~~~~~~~~~~~~~~~P~VsViIP~yne~~~l~~tL~Sll-~ 245 (482)
+..+..+++++..++-++.-..+|.....|. ++..+.... .. -.+.+.|+|+|+||+|||+.++.+++++++ +
T Consensus 12 ~~~~~~~~~~~~~~ddl~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ 88 (727)
T PRK11234 12 IAITLAVLMFISGLDDLFIDVVYWVRRIKRKLSVYRRYPRMSY-RE--LYKPDEKPLAIMVPAWNETGVIGNMAELAATT 88 (727)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccCCCCh-hh--cccCCCCCEEEEEecCcchhhHHHHHHHHHHh
Confidence 3444556666777777776555443222221 111111110 11 122367899999999999999999999987 7
Q ss_pred CCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcc------cCCceEEEEEc
Q 011596 246 LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSY------VKDYEFVAIFD 319 (482)
Q Consensus 246 q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~------~a~~d~Vl~lD 319 (482)
++||+ ++|++++|.+|+.|.+.+++..++++ +++++...++. +++|++|+|.+++.+. ..++++++++|
T Consensus 89 ldYP~--~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~~~~g-~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~D 163 (727)
T PRK11234 89 LDYEN--YHIFVGTYPNDPATQADVDAVCARFP--NVHKVVCARPG-PTSKADCLNNVLDAITQFERSANFAFAGFILHD 163 (727)
T ss_pred CCCCC--eEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEeCCCC-CCCHHHHHHHHHHHHHhhhcccCCcccEEEEEc
Confidence 99998 78999998889999999998888765 35555554543 4459999999998531 11457788999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC-CChHHHHHhhhhhhhhhhhhhhccccccccccccceEee-eH-
Q 011596 320 ADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-ENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVW-RI- 396 (482)
Q Consensus 320 aD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-Rr- 396 (482)
||++++||+|+ ++..+. ++. ++||++....+.. ..+.+..+..++...+..........+...++.|++++| |+
T Consensus 164 AD~~v~pd~L~-~~~~l~-~~~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~ 240 (727)
T PRK11234 164 AEDVISPMELR-LFNYLV-ERK-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRA 240 (727)
T ss_pred CCCCCChhHHH-HHHhhc-CCC-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEeccc
Confidence 99999999998 667776 355 8999986543332 233455555666544433333333333445689999999 77
Q ss_pred -HHHHHcC---CCCCCCchhHHHHHHHHHHCCCcEEEecc-----------------------ceecccCCcCHHHHHHH
Q 011596 397 -KALEDSG---GWMERTTVEDMDIAVRAHLRGWKFIFLND-----------------------VECQCELPESYEAYRKQ 449 (482)
Q Consensus 397 -~~l~~iG---gf~~~~~~ED~~l~~rl~~~G~ki~~~~~-----------------------~~~~~~~p~t~~~~~~q 449 (482)
+++.+.| +|+.++++||++++++++.+||++.|.|. ..++++.|+|+++..+|
T Consensus 241 l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQ 320 (727)
T PRK11234 241 VTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQ 320 (727)
T ss_pred HHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHH
Confidence 5688887 68999999999999999999999999991 33777889999999999
Q ss_pred HHhhhhh-hHHHHHHhC
Q 011596 450 QHRWHSG-PMQLFRLCL 465 (482)
Q Consensus 450 r~RW~~G-~~q~~~~~~ 465 (482)
|.||..| .+|.++...
T Consensus 321 R~RW~~G~~~q~~~~~~ 337 (727)
T PRK11234 321 KSRWIIGIVFQGFKTLG 337 (727)
T ss_pred HHHHHcccHHHHHHHhC
Confidence 9999999 688876655
No 19
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=1.6e-29 Score=240.22 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=170.2
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc-CCCCCccccHHHH
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI-LRDGYKAGNLKSA 303 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~-~~~g~Ka~aln~a 303 (482)
|+||+||+++.+++||+|+++|+||++.++|+|+||+|+|.+.++++ .....+ +.++.+.... ..+.|++.++|.|
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~--~~~v~~~~~~~~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKP--NFQLKILNNSRVSISGKKNALTTA 77 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCC--CcceEEeeccCcccchhHHHHHHH
Confidence 68999999999999999999999998778999999999999988776 333322 3344443333 2344688999999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
++ .+++|||+++|+|+.++|++|++++..+.+ ++.+++++..... ...++........+.............. .
T Consensus 78 ~~---~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 151 (229)
T cd04192 78 IK---AAKGDWIVTTDADCVVPSNWLLTFVAFIQK-EQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGLG-K 151 (229)
T ss_pred HH---HhcCCEEEEECCCcccCHHHHHHHHHHhhc-CCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHhc-C
Confidence 99 588999999999999999999999998875 5666777776544 3345555544443322221111111111 2
Q ss_pred ccccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCC-cEEEe--ccceecccCCcCHHHHHHHHHhhhhh
Q 011596 384 FFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGW-KFIFL--NDVECQCELPESYEAYRKQQHRWHSG 456 (482)
Q Consensus 384 ~~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~-ki~~~--~~~~~~~~~p~t~~~~~~qr~RW~~G 456 (482)
....+|+++++||++++++|||++. ...||.+++.++..+|+ ++.+. |.+.++++.|.++.++.+||.||+.|
T Consensus 152 ~~~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 152 PFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ccccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2235799999999999999999864 55799999999999999 89887 45668889999999999999999986
No 20
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.97 E-value=1e-29 Score=243.23 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=172.9
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccH
Q 011596 222 MVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (482)
Q Consensus 222 ~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~al 300 (482)
.|||+||+|||+ +.+.+||+|+.+|+ | .+|+|+||+++|.+.+.+++... ...+. +. ..+ ++||+.++
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~---~eiivvdd~s~d~~~~~l~~~~~---~~~~~--v~-~~~-~~g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-P---LEIIVVTDGDDEPYLSILSQTVK---YGGIF--VI-TVP-HPGKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-C---CEEEEEeCCCChHHHHHHHhhcc---CCcEE--EE-ecC-CCChHHHH
Confidence 489999999999 99999999999998 3 56889999999988776632211 22222 22 233 44599999
Q ss_pred HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccc
Q 011596 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (482)
Q Consensus 301 n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|.|++ .+++|||+++|+|+.++|++|++++..+. +|+++++++.....+.+.+.+.......+.............
T Consensus 70 n~g~~---~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
T cd06434 70 AEGIR---HVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY 145 (235)
T ss_pred HHHHH---HhCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 57999999999999999999999999998 799999999887776654555444333222222222222233
Q ss_pred cccccccccceEeeeHHHHHHcCCCC----------CCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHH
Q 011596 381 FINFFGFNGTAGVWRIKALEDSGGWM----------ERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQ 450 (482)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~~l~~iGgf~----------~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr 450 (482)
.....+++|.++++||+++++.+... .....||.+++.++.++||++.|.+.+.++++.|.++.++++||
T Consensus 146 ~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~ 225 (235)
T cd06434 146 DGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQ 225 (235)
T ss_pred CCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHh
Confidence 33445578999999999999864321 12577999999999999999999999999999999999999999
Q ss_pred HhhhhhhHH
Q 011596 451 HRWHSGPMQ 459 (482)
Q Consensus 451 ~RW~~G~~q 459 (482)
.||.+|.++
T Consensus 226 ~Rw~~~~~~ 234 (235)
T cd06434 226 LRWSRSNWR 234 (235)
T ss_pred hhhhhcccC
Confidence 999998753
No 21
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.96 E-value=9.5e-29 Score=239.12 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=177.2
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|+++|+||+|||++.+.++|+|+.+|+||+++++|+|+||+++|.+.++++++.+ .++.+ ....++ .||++
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~----~~v~~--i~~~~~-~g~~~ 99 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD----KGVKL--LRFPER-RGKAA 99 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh----CcEEE--EEcCCC-CChHH
Confidence 578999999999999999999999999999987789999999999999888876543 13433 333444 45999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
++|.|++ .+++|||+++|+|+.++|+++++++..+. +++++++++.....+.+. ........+... .......
T Consensus 100 a~n~gi~---~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 172 (251)
T cd06439 100 ALNRALA---LATGEIVVFTDANALLDPDALRLLVRHFA-DPSVGAVSGELVIVDGGG--SGSGEGLYWKYE-NWLKRAE 172 (251)
T ss_pred HHHHHHH---HcCCCEEEEEccccCcCHHHHHHHHHHhc-CCCccEEEeEEEecCCcc--cchhHHHHHHHH-HHHHHHH
Confidence 9999999 57889999999999999999999999997 588999999877665532 110001100000 1111111
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhH
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~ 458 (482)
..........|+++++||++++ +|......||.+++.++..+|+++.+.|++.+++..|.++.++.+|+.||..|.+
T Consensus 173 ~~~~~~~~~~g~~~~~rr~~~~---~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g~~ 249 (251)
T cd06439 173 SRLGSTVGANGAIYAIRRELFR---PLPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAAGNL 249 (251)
T ss_pred HhcCCeeeecchHHHhHHHHhc---CCCcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHhccc
Confidence 2222344467888899999998 6667678899999999999999999999999999999999999999999999988
Q ss_pred H
Q 011596 459 Q 459 (482)
Q Consensus 459 q 459 (482)
|
T Consensus 250 ~ 250 (251)
T cd06439 250 Q 250 (251)
T ss_pred c
Confidence 7
No 22
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.96 E-value=1.8e-27 Score=255.36 Aligned_cols=288 Identities=17% Similarity=0.124 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCCccccCCCCCCCeEEEEeecCCchHHHHHHHHHHH-hC
Q 011596 169 FLANACIVLFLIQSLDRLILCLGCFWIRFKRIKPVP-KHDDTSDLESGQKGFFPMVLVQIPMCNEKEVYQQSIAAVC-NL 246 (482)
Q Consensus 169 ~~~~~~~~lf~i~~~~~l~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~P~VsViIP~yne~~~l~~tL~Sll-~q 246 (482)
.+..+..+++++..++-+++-..+|.....|..... +..+. ...+-.+.+.|++||+||+|||++++.+++++++ ++
T Consensus 19 ~~~~~~~~~~~i~~~ddl~~d~~yw~r~~~r~~~~~~~~~~~-~~~~l~~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~l 97 (703)
T PRK15489 19 TAAVATALVILISSLDDLFIDAWYWVRELYRWLTRERRYRPL-TAEQLRERDEQPLAIMVPAWKEYDVIAKMIENMLATL 97 (703)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccccCCCC-ChHHhcccCCCceEEEEeCCCcHHHHHHHHHHHHhcC
Confidence 344555667777888888877665544333321111 11111 1111122367899999999999999999999986 78
Q ss_pred CCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcc----cCCc--eEEEEEcC
Q 011596 247 DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSY----VKDY--EFVAIFDA 320 (482)
Q Consensus 247 ~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~----~a~~--d~Vl~lDa 320 (482)
+||+ ++|+|+.+.+|.+|.+.+++....+| .++++..++..++ +|+.|+|.+++.+. ..++ +.|++.||
T Consensus 98 dYp~--~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~gp~-gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DA 172 (703)
T PRK15489 98 DYRR--YVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHDGPT-CKADCLNWIIQAIFRYEAGHGIEFAGVILHDS 172 (703)
T ss_pred CCCC--eEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCCCCC-CHHHHHHHHHHHHHhhhhhccCccceEEEEcC
Confidence 9997 56777543344455566666655443 4555544333334 59999999998530 1133 44999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCeEEEeeeee-eecCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHH
Q 011596 321 DFQPNPDFLRRTVPHFKDNEELGLVQARWS-FVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKAL 399 (482)
Q Consensus 321 D~~~~pd~L~~lv~~f~~~p~v~~V~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l 399 (482)
|++++|+.|+.+ .++..++ +++|++.. ..+...++.++.+..+|+..+..............+..|++++|||+++
T Consensus 173 Ed~~~P~~L~~~-~~~~~~~--~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL 249 (703)
T PRK15489 173 EDVLHPLELKYF-NYLLPRK--DLVQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRAL 249 (703)
T ss_pred CCCCChhHHHHH-HhhcCCc--ceeeeeeccCCCccccHHHHHHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHH
Confidence 999999999877 5554334 57887643 4455578999999999887766555444444445578999999999998
Q ss_pred HHc---CC---CCCCCchhHHHHHHHHHHCCCcEEEec-----------------------cceecccCCcCHHHHHHHH
Q 011596 400 EDS---GG---WMERTTVEDMDIAVRAHLRGWKFIFLN-----------------------DVECQCELPESYEAYRKQQ 450 (482)
Q Consensus 400 ~~i---Gg---f~~~~~~ED~~l~~rl~~~G~ki~~~~-----------------------~~~~~~~~p~t~~~~~~qr 450 (482)
+++ || |+.++++||+|+++|++++||+..|+- ...+.++.|.|+.+..+||
T Consensus 250 ~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk 329 (703)
T PRK15489 250 LALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQK 329 (703)
T ss_pred HHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHH
Confidence 876 54 666788999999999999999999921 1336778899999999999
Q ss_pred HhhhhhhH-HHHHHhC
Q 011596 451 HRWHSGPM-QLFRLCL 465 (482)
Q Consensus 451 ~RW~~G~~-q~~~~~~ 465 (482)
.||..|-. |.++...
T Consensus 330 ~RW~~Gi~~q~~~~~g 345 (703)
T PRK15489 330 ARWVLGIAFQGWEQMG 345 (703)
T ss_pred HHHHhHHHHhhHHHhC
Confidence 99999977 8765544
No 23
>PLN02893 Cellulose synthase-like protein
Probab=99.96 E-value=5.1e-27 Score=249.38 Aligned_cols=277 Identities=21% Similarity=0.278 Sum_probs=200.1
Q ss_pred HHhhcCCCCCCCCCCcccc--CCCCCCCeEEEEeec---CCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHH
Q 011596 196 RFKRIKPVPKHDDTSDLES--GQKGFFPMVLVQIPM---CNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTL 269 (482)
Q Consensus 196 ~~~r~~~~~~~~~~~~~~~--~~~~~~P~VsViIP~---yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~ 269 (482)
...|..|..+... ++... ..++++|.|+|.|++ ++|+ -...+|+-|+++.|||.+++-++|.|||...-|-+.
T Consensus 75 q~~k~~Pv~r~~~-~~~L~~~~~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~a 153 (734)
T PLN02893 75 QAFRMCPVHRRVF-IEHLEHYAKESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFA 153 (734)
T ss_pred cCccccccccccC-HHHHhhhcccccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHH
Confidence 3355666555432 22221 112479999999999 6676 688899999999999999999999999866555443
Q ss_pred HHHH----------------------------------------------------H-------HHh-------------
Q 011596 270 IKEE----------------------------------------------------V-------LKW------------- 277 (482)
Q Consensus 270 ~~~~----------------------------------------------------~-------~~~------------- 277 (482)
+.|. . +++
T Consensus 154 l~Eaa~FA~~WvPFCrk~~ie~R~P~~YF~~~~~~~~~e~~~~k~~Yee~k~ri~~~~~~~~~~~~~~~~~~~~~~f~~w 233 (734)
T PLN02893 154 FMEAAKFATHWLPFCKKNKIVERCPEAYFSSNSHSWSPETEQIKMMYESMKVRVENVVERGKVSTDYITCDQEREAFSRW 233 (734)
T ss_pred HHHHHHHHHhhcccccccCCCcCCHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHhcCcCchhhhhhcccccccccC
Confidence 3322 0 110
Q ss_pred hh--------------------------CCCeEEEEeccCC----CCCccccHHHHhhhc-ccCCceEEEEEcCCCCC-C
Q 011596 278 QE--------------------------AGANIVYRHRILR----DGYKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-N 325 (482)
Q Consensus 278 ~~--------------------------~~v~vv~~~~~~~----~g~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~ 325 (482)
.+ .-.+++|..|+++ ++.||||||.+++.+ ...+++||+++|+|+.+ +
T Consensus 234 ~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~ 313 (734)
T PLN02893 234 TDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSND 313 (734)
T ss_pred cCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCc
Confidence 00 0124677777776 468999999999953 23789999999999996 7
Q ss_pred hHHHHHHHHHhhc---CCCeEEEeeeeeeecCCCCh-HHHHHhhhhhhhhhhhh-hhccccccccccccceEeeeHHHHH
Q 011596 326 PDFLRRTVPHFKD---NEELGLVQARWSFVNKDENL-LTRLQDINLSFHFEVEQ-QVNGVFINFFGFNGTAGVWRIKALE 400 (482)
Q Consensus 326 pd~L~~lv~~f~~---~p~v~~V~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~Rr~~l~ 400 (482)
|+++++.+.+|.+ +++++.||.++.+.|.+.+- +..-... .+...+ ..++..+. .++|+++++||+++.
T Consensus 314 p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~v----ff~~~~~glDG~~gp--~y~GTGc~~RR~al~ 387 (734)
T PLN02893 314 PQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKR----LFQINMIGMDGLAGP--NYVGTGCFFRRRVFY 387 (734)
T ss_pred hhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHH----HHHHHhhcccccCCc--eeeccceEEEHHHhc
Confidence 8999999999973 23799999999998766541 1111111 122222 33333332 378999999999993
Q ss_pred H------------------------------------------------cCCCCCCCchhHHHHHHHHHHCCCcEEEecc
Q 011596 401 D------------------------------------------------SGGWMERTTVEDMDIAVRAHLRGWKFIFLND 432 (482)
Q Consensus 401 ~------------------------------------------------iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~ 432 (482)
. .+||..++++||..++++++.+||+.+|++.
T Consensus 388 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p 467 (734)
T PLN02893 388 GGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNP 467 (734)
T ss_pred CCCccccchhhhhcccccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCC
Confidence 0 1367777889999999999999999999863
Q ss_pred --ceecccCCcCHHHHHHHHHhhhhhhHHHHHHhChhhh-h-cCcchhhcc
Q 011596 433 --VECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDII-R-AKVYILSNT 479 (482)
Q Consensus 433 --~~~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~-~-s~~~~~~k~ 479 (482)
....+..|+++.+++.||.||+.|.+|++......++ . .++.+.+|+
T Consensus 468 ~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl 518 (734)
T PLN02893 468 KRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGL 518 (734)
T ss_pred CchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHH
Confidence 3468999999999999999999999999877555554 2 578887775
No 24
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.95 E-value=3.6e-27 Score=242.57 Aligned_cols=230 Identities=18% Similarity=0.207 Sum_probs=168.1
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhC-CCeEEEEe-ccCCCCCc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEA-GANIVYRH-RILRDGYK 296 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~-~v~vv~~~-~~~~~g~K 296 (482)
..|+|||+||+|||++.+.+||+|+++|+||+ ++||+|+||+|+|.|.+++++..++++.. +++++... .+.+.+||
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk 116 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGK 116 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcch
Confidence 57899999999999999999999999999995 48899999999999999998877655422 34443211 12233468
Q ss_pred cccHHHHhhhcccCC-----ceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhh--
Q 011596 297 AGNLKSAMNCSYVKD-----YEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSF-- 369 (482)
Q Consensus 297 a~aln~al~~~~~a~-----~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~-- 369 (482)
..++|.|++. ++ +||++++|+|+.++|+++++++..+++ ++++++++...... .++..+.....+..
T Consensus 117 ~~A~n~g~~~---A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~-~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~ 190 (384)
T TIGR03469 117 LWAVSQGIAA---ARTLAPPADYLLLTDADIAHGPDNLARLVARARA-EGLDLVSLMVRLRC--ESFWEKLLIPAFVFFF 190 (384)
T ss_pred HHHHHHHHHH---HhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh-CCCCEEEecccccC--CCHHHHHHHHHHHHHH
Confidence 8999999994 55 999999999999999999999999985 56677776554332 23333221111100
Q ss_pred --hhhhhhhhccccccccccccceEeeeHHHHHHcCCCCC--CCchhHHHHHHHHHHCCCcEEEeccceec-ccCCcCHH
Q 011596 370 --HFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVECQ-CELPESYE 444 (482)
Q Consensus 370 --~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~--~~~~ED~~l~~rl~~~G~ki~~~~~~~~~-~~~p~t~~ 444 (482)
.+... .............|+++++||++++++|||++ ..+.||.+++.++.++|+++.+....... ...-+++.
T Consensus 191 ~~~~~~~-~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~~s~r~~~~~~ 269 (384)
T TIGR03469 191 QKLYPFR-WVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGLAARTRSLRPYDGLG 269 (384)
T ss_pred HHhcchh-hhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEecCceEEEEecCCHH
Confidence 01111 01111112333579999999999999999976 36789999999999999999997665543 34556888
Q ss_pred HHHHHHHhhhhh
Q 011596 445 AYRKQQHRWHSG 456 (482)
Q Consensus 445 ~~~~qr~RW~~G 456 (482)
+..+|+.||...
T Consensus 270 ~~~~~~~r~~~~ 281 (384)
T TIGR03469 270 EIWRMIARTAYT 281 (384)
T ss_pred HHHHHHHHhHHH
Confidence 899999888653
No 25
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.95 E-value=5.7e-27 Score=225.50 Aligned_cols=234 Identities=17% Similarity=0.216 Sum_probs=177.6
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHH
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln 301 (482)
+++|+||+||+++.+.++|.|+.+|+||...++|+|+||+++|.+.+.+++..++ ...+.+... ++. +++.++|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~----~~~v~~i~~-~~~-~~~~a~N 74 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK----DPRIRLIDN-PKR-IQSAGLN 74 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc----CCeEEEEeC-CCC-CchHHHH
Confidence 4899999999999999999999999998567889999999999998888876553 223444433 333 4888999
Q ss_pred HHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhh-hhhc-c
Q 011596 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVE-QQVN-G 379 (482)
Q Consensus 302 ~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 379 (482)
.|++ .+++||++++|+|+.++|++|++++..+.+ ++.+++++.....+.. . ............+... .... .
T Consensus 75 ~g~~---~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (249)
T cd02525 75 IGIR---NSRGDIIIRVDAHAVYPKDYILELVEALKR-TGADNVGGPMETIGES-K-FQKAIAVAQSSPLGSGGSAYRGG 148 (249)
T ss_pred HHHH---HhCCCEEEEECCCccCCHHHHHHHHHHHhc-CCCCEEecceecCCCC-h-HHHHHHHHhhchhccCCcccccc
Confidence 9999 579999999999999999999999998874 6777777765433322 1 1111110000000000 0000 0
Q ss_pred ccccccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhhH
Q 011596 380 VFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPM 458 (482)
Q Consensus 380 ~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~ 458 (482)
.........|+++++|+++++++|+|++. ...||.+++.++.++|+++.++|++.+++..+.+++++.+|+.||..|.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~ 228 (249)
T cd02525 149 AVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWRA 228 (249)
T ss_pred ccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhhH
Confidence 00002235788899999999999999876 44699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhChh
Q 011596 459 QLFRLCLPD 467 (482)
Q Consensus 459 q~~~~~~~~ 467 (482)
+..+++...
T Consensus 229 ~~~~~~~~~ 237 (249)
T cd02525 229 RTLRKHRKS 237 (249)
T ss_pred HHHHhCcCc
Confidence 998875543
No 26
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.94 E-value=1.4e-25 Score=223.26 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=162.0
Q ss_pred EEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHH
Q 011596 224 LVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (482)
Q Consensus 224 sViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~ 302 (482)
|||||+||++ +.+.+||+|+.+|+++....|||||||+|+|.+.+.+.+....-...++++ +..+.+ .|.+.+.|.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~v--i~~~~n-~G~~~a~N~ 77 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKV--LRLKKR-EGLIRARIA 77 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEE--EEcCCC-CCHHHHHHH
Confidence 6999999999 999999999999998865568999999999988877755222111223444 333444 458999999
Q ss_pred HhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHH----H-hhhhhhhhh---h-
Q 011596 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRL----Q-DINLSFHFE---V- 373 (482)
Q Consensus 303 al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~----~-~~~~~~~~~---~- 373 (482)
|++ .+++|||+++|+|+.++|+||++++..+..+|.. ++++.....+.+....... . ...+..... .
T Consensus 78 g~~---~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 78 GAR---AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHH---HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 999 6899999999999999999999999999876654 4544332221110000000 0 000000000 0
Q ss_pred -h---hhhccccccccccccceEeeeHHHHHHcCCCCCCCc---hhHHHHHHHHHHCCCcEEEeccceecccCC-cC---
Q 011596 374 -E---QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLNDVECQCELP-ES--- 442 (482)
Q Consensus 374 -~---~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~---~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p-~t--- 442 (482)
. ............++|+++++||++++++|||++... .||.|+++|+.++|+++.++|++.+.+... .+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~~~~~~~ 233 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPY 233 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEeccccCCCC
Confidence 0 000111122334689999999999999999998743 499999999999999999999999776333 11
Q ss_pred ---------HHHHHHHHHhhhhhhHHHHHHhChhhh
Q 011596 443 ---------YEAYRKQQHRWHSGPMQLFRLCLPDII 469 (482)
Q Consensus 443 ---------~~~~~~qr~RW~~G~~q~~~~~~~~i~ 469 (482)
.+...+...+|..-....+.++.+.+.
T Consensus 234 ~~~~~~~~~~~n~~r~~~~w~~~~~~~~~~~~~~~~ 269 (299)
T cd02510 234 TFPGGSGTVLRNYKRVAEVWMDEYKEYFYKARPELR 269 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 123345556677666666666655554
No 27
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.93 E-value=2.4e-25 Score=205.30 Aligned_cols=181 Identities=22% Similarity=0.286 Sum_probs=142.5
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+|||++.|.++|+++.+|+||...++|+|+||+|+|.|.+++++ .+..++.+ ....+++|+.++|.|+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-------~~~~~~~~-~~~~~~gk~~aln~g~ 72 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-------AGATVLER-HDPERRGKGYALDFGF 72 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-------cCCeEEEe-CCCCCCCHHHHHHHHH
Confidence 689999999999999999999999877789999999999999887763 33444433 2334456999999999
Q ss_pred hhcc--cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccc
Q 011596 305 NCSY--VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFI 382 (482)
Q Consensus 305 ~~~~--~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
+.+. .+++|+|+++|+|++++|+++.+++..+.++ .++|++.....+.+.+++.+.....+...............
T Consensus 73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (183)
T cd06438 73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAG--ARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLG 150 (183)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhC--CCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8642 3469999999999999999999999999754 46788887776666688877776665544444443333344
Q ss_pred cccccccceEeeeHHHHHHcCCCCCCCchhHHHH
Q 011596 383 NFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDI 416 (482)
Q Consensus 383 ~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l 416 (482)
....+.|+++++||+++++ |||.+..+.||+++
T Consensus 151 ~~~~~~G~~~~~rr~~l~~-~g~~~~~l~ED~~~ 183 (183)
T cd06438 151 LSCQLGGTGMCFPWAVLRQ-APWAAHSLTEDLEF 183 (183)
T ss_pred CCeeecCchhhhHHHHHHh-CCCCCCCcccccCC
Confidence 4455789999999999999 89999899999874
No 28
>PLN02189 cellulose synthase
Probab=99.92 E-value=4.4e-24 Score=231.61 Aligned_cols=256 Identities=22% Similarity=0.318 Sum_probs=188.6
Q ss_pred CCCeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH---------------------
Q 011596 219 FFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE--------------------- 273 (482)
Q Consensus 219 ~~P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~--------------------- 273 (482)
++|.|+|+|+|-+.. -...+|+-|+++.|||.+++-++|.|||...-|-+.+.|.
T Consensus 329 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaP 408 (1040)
T PLN02189 329 MLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAP 408 (1040)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCH
Confidence 599999999997654 5888999999999999999999999998655554433321
Q ss_pred ------------------------------------HH-------Hhhh-------------------------------
Q 011596 274 ------------------------------------VL-------KWQE------------------------------- 279 (482)
Q Consensus 274 ------------------------------------~~-------~~~~------------------------------- 279 (482)
++ +.++
T Consensus 409 e~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~ 488 (1040)
T PLN02189 409 EFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSG 488 (1040)
T ss_pred HHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCC
Confidence 00 0000
Q ss_pred ----CC---CeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCCC-hHHHHHHHHHhhcCC----Ce
Q 011596 280 ----AG---ANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQPN-PDFLRRTVPHFKDNE----EL 342 (482)
Q Consensus 280 ----~~---v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~~-pd~L~~lv~~f~~~p----~v 342 (482)
.+ .+++|+.|+++.| .||||||..++.+ ...+++||+.+|+|+.++ |+.+++.+.+|. || ++
T Consensus 489 ~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCffl-Dp~~g~~v 567 (1040)
T PLN02189 489 GHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM-DPQIGRKV 567 (1040)
T ss_pred CccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhc-CCccCcee
Confidence 00 1388888887655 7999999999764 357899999999999885 699999999998 57 89
Q ss_pred EEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHc--------------------
Q 011596 343 GLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS-------------------- 402 (482)
Q Consensus 343 ~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i-------------------- 402 (482)
+.||.++.+.|.+.+-. ..+-...++-...+..++..+.+ ++|+++++||+++-..
T Consensus 568 AfVQFPQrF~~i~k~D~--Ygn~~~vffdi~~~GlDGlqGP~--YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 643 (1040)
T PLN02189 568 CYVQFPQRFDGIDTHDR--YANRNTVFFDINMKGLDGIQGPV--YVGTGCVFRRQALYGYDPPKGPKRPKMVTCDCCPCF 643 (1040)
T ss_pred EEEeCccccCCCCCCCc--cCCccceeeeeeecccccCCCcc--ccccCceeeeeeeeccCcccccccccccccchhhhc
Confidence 99999999988765311 11111111112223334443333 6788888888765421
Q ss_pred --------------------------------------------------------------------------------
Q 011596 403 -------------------------------------------------------------------------------- 402 (482)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (482)
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~ 723 (1040)
T PLN02189 644 GRRKKKHAKNGLNGEVAALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDK 723 (1040)
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccC
Confidence
Q ss_pred ---C---CCCCCCchhHHHHHHHHHHCCCcEEEec--cceecccCCcCHHHHHHHHHhhhhhhHHHHHHhChhhh----h
Q 011596 403 ---G---GWMERTTVEDMDIAVRAHLRGWKFIFLN--DVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDII----R 470 (482)
Q Consensus 403 ---G---gf~~~~~~ED~~l~~rl~~~G~ki~~~~--~~~~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~----~ 470 (482)
| ||..++++||+..+++++.+||+.+|+. .+...+.+|+++.+++.||.||+.|.+|++......++ +
T Consensus 724 T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~ 803 (1040)
T PLN02189 724 TDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKG 803 (1040)
T ss_pred CchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCC
Confidence 0 3444457899999999999999999995 34467999999999999999999999999986665555 2
Q ss_pred cCcchhhcc
Q 011596 471 AKVYILSNT 479 (482)
Q Consensus 471 s~~~~~~k~ 479 (482)
.++.+.+|+
T Consensus 804 ~~L~l~QRL 812 (1040)
T PLN02189 804 GNLKWLERF 812 (1040)
T ss_pred CCCCHHHHH
Confidence 468888875
No 29
>PLN02195 cellulose synthase A
Probab=99.92 E-value=1e-23 Score=227.56 Aligned_cols=256 Identities=20% Similarity=0.273 Sum_probs=186.0
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH--------------------
Q 011596 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (482)
Q Consensus 218 ~~~P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~-------------------- 273 (482)
.++|.|+|.|+|-+.. -...+|+-|+++.|||.+++-++|.|||...-|-+.+.|.
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 328 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRA 328 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 3699999999997654 5888999999999999999999999998655544433321
Q ss_pred -----------------------------------------HHH---hhh------------------------------
Q 011596 274 -----------------------------------------VLK---WQE------------------------------ 279 (482)
Q Consensus 274 -----------------------------------------~~~---~~~------------------------------ 279 (482)
.++ .++
T Consensus 329 Pe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~ 408 (977)
T PLN02195 329 PEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGET 408 (977)
T ss_pred HHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCC
Confidence 000 000
Q ss_pred --------CCCeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCCCh-HHHHHHHHHhhcCC----C
Q 011596 280 --------AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQPNP-DFLRRTVPHFKDNE----E 341 (482)
Q Consensus 280 --------~~v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~~p-d~L~~lv~~f~~~p----~ 341 (482)
.-.+++|+.|+++.| .|+||+|.+++.+ ...+++||+.+|+|+.+++ +++++.+.+|. || +
T Consensus 409 ~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~-D~~~g~~ 487 (977)
T PLN02195 409 GARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLM-DPVVGRD 487 (977)
T ss_pred CCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhcc-CcccCCe
Confidence 002477777777655 6999999999864 3578999999999997755 79999999987 56 7
Q ss_pred eEEEeeeeeeecCCCCh-HHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHcC-----------------
Q 011596 342 LGLVQARWSFVNKDENL-LTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG----------------- 403 (482)
Q Consensus 342 v~~V~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG----------------- 403 (482)
++.||.++.+.|.+.+- +..-....+ ....+..++..+.+ ++|+++++||+++-..+
T Consensus 488 va~VQ~PQ~F~~i~~~D~y~~~~~~ff---d~~~~g~dglqGP~--YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~ 562 (977)
T PLN02195 488 VCYVQFPQRFDGIDRSDRYANRNVVFF---DVNMKGLDGIQGPV--YVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSC 562 (977)
T ss_pred eEEEcCCcccCCCCCCCCCCcccceee---eeeeccccccCCcc--ccccCceeeehhhhccCccccccccccccccccc
Confidence 78999999998876431 111111111 11122233333333 67888888887765321
Q ss_pred --------------------------------------------------------------------------------
Q 011596 404 -------------------------------------------------------------------------------- 403 (482)
Q Consensus 404 -------------------------------------------------------------------------------- 403 (482)
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ 642 (977)
T PLN02195 563 CCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPST 642 (977)
T ss_pred cccccccccccchhhccccccccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHH
Confidence
Q ss_pred -----------------------CCCCCCchhHHHHHHHHHHCCCcEEEeccc--eecccCCcCHHHHHHHHHhhhhhhH
Q 011596 404 -----------------------GWMERTTVEDMDIAVRAHLRGWKFIFLNDV--ECQCELPESYEAYRKQQHRWHSGPM 458 (482)
Q Consensus 404 -----------------------gf~~~~~~ED~~l~~rl~~~G~ki~~~~~~--~~~~~~p~t~~~~~~qr~RW~~G~~ 458 (482)
||..++++||+..+++++.+||+.+|++.. ...+..|+++.+++.||.||+.|.+
T Consensus 643 ~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~l 722 (977)
T PLN02195 643 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSV 722 (977)
T ss_pred HHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchh
Confidence 233344789999999999999999998754 3688999999999999999999999
Q ss_pred HHHHHhChhhhh----cCcchhhcc
Q 011596 459 QLFRLCLPDIIR----AKVYILSNT 479 (482)
Q Consensus 459 q~~~~~~~~i~~----s~~~~~~k~ 479 (482)
|++......++. .++.|.+|+
T Consensus 723 qI~~sr~nPl~~g~~~~~L~~~QRL 747 (977)
T PLN02195 723 EIFLSRHCPLWYGYGGGRLKWLQRL 747 (977)
T ss_pred hhhhccCCccccccCCCCCCHHHHH
Confidence 999866655542 578888875
No 30
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.92 E-value=4e-24 Score=199.48 Aligned_cols=196 Identities=17% Similarity=0.276 Sum_probs=144.1
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHH-HHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPT-AQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 221 P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~-t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
|++||+||+||++ +.+++||+|+++|+|++ ++|+|+||+|+|. +.++++.+..+ ...+. +...+ .+++++.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~~~~~~--~~~~~--~~~~~-~~~g~~~ 73 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLKKYAAQ--DPRIK--VVFRE-ENGGISA 73 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHHHHHhc--CCCEE--EEEcc-cCCCHHH
Confidence 6799999999999 99999999999999986 6789999988764 54555544332 12233 33333 3445899
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
++|.|++ .+++||++++|+|+.++|++|++++..+..+|+++++.+...................+. ... .
T Consensus 74 a~n~g~~---~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~---~- 144 (202)
T cd04184 74 ATNSALE---LATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWS--PDL---L- 144 (202)
T ss_pred HHHHHHH---hhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCC--HHH---h-
Confidence 9999999 578999999999999999999999999966799999877654333222111111000000 000 0
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEeccceec
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~~~ 436 (482)
....+.++++++||++++++|||++. ...||++++.|+.++|+++.++|++...
T Consensus 145 ----~~~~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~~~ 199 (202)
T cd04184 145 ----LSQNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVLYH 199 (202)
T ss_pred ----hhcCCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhhhh
Confidence 00124577789999999999999876 4579999999999999999999987643
No 31
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.92 E-value=6.6e-24 Score=198.01 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=147.0
Q ss_pred EEEeecCCch--HHHHHHHHHHHhCCCCCCceEEEEEcCCC-CHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccH
Q 011596 224 LVQIPMCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDDSD-DPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNL 300 (482)
Q Consensus 224 sViIP~yne~--~~l~~tL~Sll~q~yp~~~~~IiVvDdss-dd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~al 300 (482)
||+||+||++ +.+++||+|+++|+|++ .+|+|+||++ +|.+.++++++.++ .++++ ...+.+. |++.++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~d~t~~~~~~~~~~---~~i~~--i~~~~n~-G~~~a~ 72 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQSLNEVLEEFKRK---LPLKV--VPLEKNR-GLGKAL 72 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCchhHHHHHHHHHhc---CCeEE--EEcCccc-cHHHHH
Confidence 6999999997 69999999999999986 4577777765 88888888776553 23433 3334444 489999
Q ss_pred HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccc
Q 011596 301 KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (482)
Q Consensus 301 n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
|.|++ .+++|||+++|+|+.++|+++++++..+.++|+++++++.......+............ ........
T Consensus 73 N~g~~---~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--- 144 (201)
T cd04195 73 NEGLK---HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTS--HDDILKFA--- 144 (201)
T ss_pred HHHHH---hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCC--HHHHHHHh---
Confidence 99999 68999999999999999999999999998889999999887665443321110000000 00000000
Q ss_pred cccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceec
Q 011596 381 FINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (482)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~ 436 (482)
....++.+.++++||++++++|+|++....||++++.++..+|+++.++|++.++
T Consensus 145 -~~~~~~~~~~~~~rr~~~~~~g~~~~~~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 145 -RRRSPFNHPTVMFRKSKVLAVGGYQDLPLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred -ccCCCCCChHHhhhHHHHHHcCCcCCCCCchHHHHHHHHHHcCCceecccHHHhh
Confidence 0112245677899999999999998888899999999999999999999987654
No 32
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.9e-22 Score=201.82 Aligned_cols=282 Identities=22% Similarity=0.244 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCCCCeEEEEeecCCch-----HHHHHHHHHHHhCCC
Q 011596 174 CIVLFLIQSLDRLILCLGCFWIRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCNEK-----EVYQQSIAAVCNLDW 248 (482)
Q Consensus 174 ~~~lf~i~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~P~VsViIP~yne~-----~~l~~tL~Sll~q~y 248 (482)
..++|..++......+.|++.....+.++....+ +++.. +.....|++|+|||+ ..++.+.+|+.+...
T Consensus 103 fa~lFcwvs~~F~tAl~GF~~L~~~~~r~~~~~p----~~p~p--~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~ 176 (736)
T COG2943 103 FAVLFCWVSAGFWTALMGFLVLLFGRDRYLSIAP----NEPLP--DLHRTAILMPIYNEDVNRVFAGLRATYESLAATGH 176 (736)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecCCCcCCCCC----CCCCC--cccceeEEeeccccCHHHHHHHHHHHHHHHHhhCC
Confidence 3445555555555666777666655555533221 11111 234589999999998 578888889887554
Q ss_pred CCCceEEEEEcCCCCHHHHHHHH-H---HHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCC
Q 011596 249 PKSKILIQVLDDSDDPTAQTLIK-E---EVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQP 324 (482)
Q Consensus 249 p~~~~~IiVvDdssdd~t~~~~~-~---~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~ 324 (482)
.+++.++|+.|+.|++..-.-+ + +.++. +...++.|+.|.+|.+.|++|+..-.++ +...|+|.+++|||.++
T Consensus 177 -~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~-~g~~~ifYRrRr~n~~RKaGNIaDfcrR-wG~~Y~~MlVLDADSvM 253 (736)
T COG2943 177 -AEHFDFFVLSDSRDPDIALAEQKAWAELCREL-GGEGNIFYRRRRRNVKRKAGNIADFCRR-WGSAYSYMLVLDADSVM 253 (736)
T ss_pred -cccceEEEEcCCCCchhhhhHHHHHHHHHHHh-CCCCceeeehHhhhhcccccCHHHHHHH-hCcccceEEEeeccccc
Confidence 4478999999998887642111 1 11211 2337889999999999999999987764 46889999999999999
Q ss_pred ChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhh-ccccccccccccceEeeeHHHHHHcC
Q 011596 325 NPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV-NGVFINFFGFNGTAGVWRIKALEDSG 403 (482)
Q Consensus 325 ~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~Rr~~l~~iG 403 (482)
.+||+.++++.|+.||+.|++|+.....|. +.++.+.|.+....+.+..... .-+...-..+.|+|.++|.++|-+.-
T Consensus 254 tgd~lvrLv~~ME~~P~aGlIQt~P~~~gg-~TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hc 332 (736)
T COG2943 254 TGDCLVRLVRLMEANPDAGLIQTSPKASGG-DTLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHC 332 (736)
T ss_pred CchHHHHHHHHHhhCCCCceeecchhhcCc-chHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhc
Confidence 999999999999999999999999887777 4788888877654443332211 11111222378999999999999863
Q ss_pred C---------CCCCCchhHHHHHHHHHHCCCcEEEeccce-ecccCCcCHHHHHHHHHhhhhhhHHHHHHhC
Q 011596 404 G---------WMERTTVEDMDIAVRAHLRGWKFIFLNDVE-CQCELPESYEAYRKQQHRWHSGPMQLFRLCL 465 (482)
Q Consensus 404 g---------f~~~~~~ED~~l~~rl~~~G~ki~~~~~~~-~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~ 465 (482)
| |.....+.|+.-+-.+.+.||.+...++-- .|+|.|+|+-++.++-+|||+|++|.++...
T Consensus 333 gLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~rl~~ 404 (736)
T COG2943 333 GLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHFRLFL 404 (736)
T ss_pred CCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEeccCCCchhhCCchHHHHHhhhhHhhhcchhhceeec
Confidence 3 444456789999999999999999999877 8999999999999999999999999876543
No 33
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=99.91 E-value=2.7e-23 Score=226.19 Aligned_cols=257 Identities=23% Similarity=0.307 Sum_probs=187.1
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH--------------------
Q 011596 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (482)
Q Consensus 218 ~~~P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~-------------------- 273 (482)
.++|.|+|+|+|-+.. -...+|+-|+++.|||.+++-++|.|||...-|-+.+.|.
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 425 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 425 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 3699999999997654 5888999999999999999999999998655554433322
Q ss_pred -------------------------------------HH-------Hhhh------------------------------
Q 011596 274 -------------------------------------VL-------KWQE------------------------------ 279 (482)
Q Consensus 274 -------------------------------------~~-------~~~~------------------------------ 279 (482)
++ +.++
T Consensus 426 Pe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~ 505 (1079)
T PLN02638 426 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHS 505 (1079)
T ss_pred HHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCCCCHHHHHHHhcCC
Confidence 00 0000
Q ss_pred -----CC---CeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCCC-hHHHHHHHHHhhcCCC----
Q 011596 280 -----AG---ANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQPN-PDFLRRTVPHFKDNEE---- 341 (482)
Q Consensus 280 -----~~---v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~~-pd~L~~lv~~f~~~p~---- 341 (482)
.+ .+++|+.|+++.| .||||||..++.+ ...+++||+.+|+|+.++ |+.+++.+.+|. ||+
T Consensus 506 ~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~l-Dp~~g~~ 584 (1079)
T PLN02638 506 GGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLM-DPNLGKS 584 (1079)
T ss_pred CccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhc-CcccCCe
Confidence 00 1358888887655 7999999999864 457899999999999775 999999999987 564
Q ss_pred eEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHc-------------------
Q 011596 342 LGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------- 402 (482)
Q Consensus 342 v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i------------------- 402 (482)
++.||.++.+.|.+.+- +..+-...++-...+..++..+.+ +.|+++++||+++-..
T Consensus 585 vafVQFPQrF~~i~k~D--~Ygn~~~vffdi~~~GlDGlqGP~--YvGTGC~fRR~ALYG~~p~~~~~~~~~~~~~~~~~ 660 (1079)
T PLN02638 585 VCYVQFPQRFDGIDRND--RYANRNTVFFDINLRGLDGIQGPV--YVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLCG 660 (1079)
T ss_pred eEEecCCcccCCCCCCC--cccccceeeeccccccccccCCcc--ccccCcceeehhhcCcCCccccccccccccccccc
Confidence 88999999998876531 111111111112223334443333 6788888888776421
Q ss_pred --------------------------------------------------------------------------------
Q 011596 403 -------------------------------------------------------------------------------- 402 (482)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (482)
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~ 740 (1079)
T PLN02638 661 GSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQ 740 (1079)
T ss_pred ccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhccccHHHHHHHHHhhcCCCC
Confidence
Q ss_pred -------------------------C---CCCCCCchhHHHHHHHHHHCCCcEEEe-ccc-eecccCCcCHHHHHHHHHh
Q 011596 403 -------------------------G---GWMERTTVEDMDIAVRAHLRGWKFIFL-NDV-ECQCELPESYEAYRKQQHR 452 (482)
Q Consensus 403 -------------------------G---gf~~~~~~ED~~l~~rl~~~G~ki~~~-~~~-~~~~~~p~t~~~~~~qr~R 452 (482)
| ||..++++||+..+++++.+||+.+|+ |+. ...+.+|+++.+++.||.|
T Consensus 741 ~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~R 820 (1079)
T PLN02638 741 SATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLR 820 (1079)
T ss_pred CCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHH
Confidence 0 122334789999999999999999999 433 3679999999999999999
Q ss_pred hhhhhHHHHHHhChhhh---hcCcchhhcc
Q 011596 453 WHSGPMQLFRLCLPDII---RAKVYILSNT 479 (482)
Q Consensus 453 W~~G~~q~~~~~~~~i~---~s~~~~~~k~ 479 (482)
|+.|.+|++......++ +.++.+.+|+
T Consensus 821 WA~G~lqI~fsr~nPl~~G~~~rL~l~QRL 850 (1079)
T PLN02638 821 WALGSVEILFSRHCPIWYGYGGRLKWLERF 850 (1079)
T ss_pred HhhcchheeeccCCccccccCCCCCHHHHH
Confidence 99999999975554455 3578888875
No 34
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.91 E-value=1.4e-23 Score=195.20 Aligned_cols=181 Identities=25% Similarity=0.365 Sum_probs=141.8
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+|||+++|.+||+|+.+|+ |+ ++|+|+||+|+|.+.++++ ... ...+++++....+..++||+.++|.|+
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~-~~--~eIivvdd~S~D~t~~~~~-~~~--~~~~v~~i~~~~~~~~~Gk~~aln~g~ 74 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK-PN--FLVLVIDDASDDDTAGIVR-LAI--TDSRVHLLRRHLPNARTGKGDALNAAY 74 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC-CC--eEEEEEECCCCcCHHHHHh-hee--cCCcEEEEeccCCcCCCCHHHHHHHHH
Confidence 68999999999999999999998 54 7899999999999988876 211 123444443222333456999999999
Q ss_pred hhcc--------cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhh
Q 011596 305 NCSY--------VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQ 376 (482)
Q Consensus 305 ~~~~--------~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 376 (482)
+.+. ..++|+|+++|+|+.++|++|+++...+. +|+++++++.....|.+.++.++++.+++.......+.
T Consensus 75 ~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 153 (191)
T cd06436 75 DQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQS 153 (191)
T ss_pred HHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8531 11358999999999999999999888886 79999999999888888899999999988766655555
Q ss_pred hccccccccccccceEeeeHHHHHHcCCCCCC--CchhH
Q 011596 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMER--TTVED 413 (482)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED 413 (482)
...... ..++.|+++++|+++++++|||.+. .++||
T Consensus 154 ~~~~~~-~~~~~G~~~~~r~~~l~~vgg~~~~~~~~~ED 191 (191)
T cd06436 154 LRALTG-TVGLGGNGQFMRLSALDGLIGEEPWSDSLLED 191 (191)
T ss_pred HHHhcC-cEEECCeeEEEeHHHHHHhhcCCCCchhhcCC
Confidence 544443 3457899999999999999776553 67776
No 35
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.91 E-value=4.2e-23 Score=214.61 Aligned_cols=242 Identities=19% Similarity=0.277 Sum_probs=190.4
Q ss_pred CCCeEEEEeecCCch-HHHHHHHHHHHhCCCCCC-ceEEEEEcC-----CCCHHHHHHHHHHHHHhh-------------
Q 011596 219 FFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKS-KILIQVLDD-----SDDPTAQTLIKEEVLKWQ------------- 278 (482)
Q Consensus 219 ~~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~-~~~IiVvDd-----ssdd~t~~~~~~~~~~~~------------- 278 (482)
..+.+-.+||||||. +.|++||+|+..++||+. ++.++|+|+ |.+.+|.+++......+.
T Consensus 23 ~~~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~ 102 (527)
T PF03142_consen 23 PDKFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVS 102 (527)
T ss_pred CCceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEE
Confidence 456788999999997 999999999999999976 455555665 577788887766543000
Q ss_pred ------------------------------hCCCeEEEEec-----------cCCCCCccccHHHHhhhc----------
Q 011596 279 ------------------------------EAGANIVYRHR-----------ILRDGYKAGNLKSAMNCS---------- 307 (482)
Q Consensus 279 ------------------------------~~~v~vv~~~~-----------~~~~g~Ka~aln~al~~~---------- 307 (482)
+.++..+.+-. +.|. ||+..+-..+...
T Consensus 103 ~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~Nr-GKRDsq~~~~~fl~~~~~~~~~~ 181 (527)
T PF03142_consen 103 LGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNR-GKRDSQILLMSFLNKVHFNNPMT 181 (527)
T ss_pred eccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccC-CchHHHHHHHHHHHHHhcCCCCc
Confidence 00122222212 2233 4775433222210
Q ss_pred ----------------ccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhh
Q 011596 308 ----------------YVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHF 371 (482)
Q Consensus 308 ----------------~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~ 371 (482)
....+|||+.+|||+.+.|+++.+++..|.+||++++++|.....|...++++..|.++|...+
T Consensus 182 ~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish 261 (527)
T PF03142_consen 182 PLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISH 261 (527)
T ss_pred hHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHH
Confidence 1345799999999999999999999999999999999999988899999999999999999999
Q ss_pred hhhhhhccccccccccccceEeeeHHHHHHc--------------CCCCC-----------CCchhHHHHHHHHHHC--C
Q 011596 372 EVEQQVNGVFINFFGFNGTAGVWRIKALEDS--------------GGWME-----------RTTVEDMDIAVRAHLR--G 424 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i--------------Ggf~~-----------~~~~ED~~l~~rl~~~--G 424 (482)
...+..++.++.+.|+.|+++++|.++++.- .+|.+ ...+||..++..+.++ |
T Consensus 262 ~l~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~~ 341 (527)
T PF03142_consen 262 HLQKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFPG 341 (527)
T ss_pred HHHHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCCC
Confidence 9999999999999999999999999987761 11211 1467999999888887 8
Q ss_pred CcEEEeccceecccCCcCHHHHHHHHHhhhhhhHHHH
Q 011596 425 WKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLF 461 (482)
Q Consensus 425 ~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~~q~~ 461 (482)
|++.|+|++.+++.+|++++.+++||+||..|.+...
T Consensus 342 ~k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 342 YKTEYVPSAVAYTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred ceEEEcccccccccCCccHHHHHHHhhhccchhHhhH
Confidence 9999999999999999999999999999999887553
No 36
>PLN02248 cellulose synthase-like protein
Probab=99.90 E-value=9.7e-23 Score=221.71 Aligned_cols=192 Identities=23% Similarity=0.337 Sum_probs=140.1
Q ss_pred EEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCC-ChHHHHHHHHHhhc--CCCeEEEeeeeeeecCC
Q 011596 284 IVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKD--NEELGLVQARWSFVNKD 355 (482)
Q Consensus 284 vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~--~p~v~~V~~~~~~~n~~ 355 (482)
++|+.|+++.| .||||||..++.+ ...+++||+.+|+|+.+ ++..+++.+.+|.+ .++++.||.++.+.|.+
T Consensus 587 LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQrF~~I~ 666 (1135)
T PLN02248 587 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEGID 666 (1135)
T ss_pred eEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcccCCCC
Confidence 55666665544 6999999888753 45789999999999987 56799999999984 37999999999998876
Q ss_pred CChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHc---------------------------------
Q 011596 356 ENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS--------------------------------- 402 (482)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i--------------------------------- 402 (482)
.+-. ..+-...++-...+..++..+.+ ++|+++++||+++-..
T Consensus 667 k~D~--Ygn~~~Vffdi~~~GlDGlqGP~--YvGTGCffRR~ALYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1135)
T PLN02248 667 PSDR--YANHNTVFFDVNMRALDGLQGPV--YVGTGCLFRRIALYGFDPPRAKEHSGCFGSCKFTKKKKKETSASEPEEQ 742 (1135)
T ss_pred CCCc--cCCcceeeeeeeeccccccCCcc--ccccCceeeehhhcCcCCccccccccccccccccccccccccccccccc
Confidence 5311 11111111112223334443333 6788888888766421
Q ss_pred --------------------------------------------------------------------------------
Q 011596 403 -------------------------------------------------------------------------------- 402 (482)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (482)
T Consensus 743 ~~~~~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T 822 (1135)
T PLN02248 743 PDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKT 822 (1135)
T ss_pred ccccccchhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCC
Confidence
Q ss_pred --C---CCCCCCchhHHHHHHHHHHCCCcEEEec--cceecccCCcCHHHHHHHHHhhhhhhHHHHHHhChhhh-hcCcc
Q 011596 403 --G---GWMERTTVEDMDIAVRAHLRGWKFIFLN--DVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDII-RAKVY 474 (482)
Q Consensus 403 --G---gf~~~~~~ED~~l~~rl~~~G~ki~~~~--~~~~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~-~s~~~ 474 (482)
| ||..++++||+..+++++.+||+.+|++ .....+..|+++.+++.||.||+.|.+|++....+.++ ..+++
T Consensus 823 ~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~~~~Ls 902 (1135)
T PLN02248 823 EWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRLK 902 (1135)
T ss_pred chhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCccccCCCCC
Confidence 0 2333457899999999999999999984 44467999999999999999999999999987776655 35788
Q ss_pred hhhcc
Q 011596 475 ILSNT 479 (482)
Q Consensus 475 ~~~k~ 479 (482)
+.||+
T Consensus 903 l~QRL 907 (1135)
T PLN02248 903 FLQRI 907 (1135)
T ss_pred HHHHH
Confidence 88876
No 37
>PLN02190 cellulose synthase-like protein
Probab=99.90 E-value=1e-22 Score=215.51 Aligned_cols=275 Identities=21% Similarity=0.333 Sum_probs=191.7
Q ss_pred HHHhhcCCCCCCCCCCccccCCCCCCCeEEEEeecCC---ch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHH
Q 011596 195 IRFKRIKPVPKHDDTSDLESGQKGFFPMVLVQIPMCN---EK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLI 270 (482)
Q Consensus 195 ~~~~r~~~~~~~~~~~~~~~~~~~~~P~VsViIP~yn---e~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~ 270 (482)
....+++|..+.+. ++.....-+++|.|+|.|+++| |+ ..+.+|+.|+++.|||.+++-++|.|||...-|-+.+
T Consensus 68 ~q~~kw~pv~r~~~-p~~l~~r~~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al 146 (756)
T PLN02190 68 ITCIKWSPAEYKPY-PDRLDERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSL 146 (756)
T ss_pred hccceeeecCCCCC-cHHHHHhhccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHH
Confidence 34456666655432 2222111125899999999999 76 8899999999999999999999999998766555443
Q ss_pred HHH-----------------------------------------------HHHhh----h--------------------
Q 011596 271 KEE-----------------------------------------------VLKWQ----E-------------------- 279 (482)
Q Consensus 271 ~~~-----------------------------------------------~~~~~----~-------------------- 279 (482)
.|. .+++. +
T Consensus 147 ~EAa~FA~~WvPFCrK~~IepRaPe~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~a~~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 147 KEASKFAKIWVPFCKKYNVRVRAPFRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred HHHHHHHhhhcccccccCCCcCCHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhccCCCCcccCCcccccCCC
Confidence 332 00000 0
Q ss_pred -----------------------CCCeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCC-ChHHHH
Q 011596 280 -----------------------AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLR 330 (482)
Q Consensus 280 -----------------------~~v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~pd~L~ 330 (482)
.-.+++|+.|+++.| .|+||||..++.+ ...++.||+.+|+|+.. +|+.++
T Consensus 227 ~~~dH~~iiqVll~~~~~~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCCccceEEEecCCCCccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 012467777776644 8999999988864 35789999999999966 799999
Q ss_pred HHHHHhhcCC----CeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHH------
Q 011596 331 RTVPHFKDNE----ELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALE------ 400 (482)
Q Consensus 331 ~lv~~f~~~p----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~------ 400 (482)
+.+..|.+.+ +++.||.++.+.+...|-...... ......++..+.+ +.|+++++||+++-
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~D~y~n~~~v~f~-------~~~~GldGlqGP~--YvGTGCffrR~alyG~~p~~ 377 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFYDSNTNELTVLQS-------YLGRGIAGIQGPI--YIGSGCFHTRRVMYGLSSDD 377 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhccccCccceEEEE-------EeeccccccCCcc--cccCCcceEeeeecCCCccc
Confidence 9999887432 689999999886443332111111 1112223333222 45666666654432
Q ss_pred ------------------------------------------------------Hc--------------C---CCCCCC
Q 011596 401 ------------------------------------------------------DS--------------G---GWMERT 409 (482)
Q Consensus 401 ------------------------------------------------------~i--------------G---gf~~~~ 409 (482)
+. | ||..++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygS 457 (756)
T PLN02190 378 LEDDGSLSSVATREFLAEDSLAREFGNSKEMVKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDS 457 (756)
T ss_pred ccccccccccccccccchhhhhhhcCCcHHHHHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccce
Confidence 10 1 455567
Q ss_pred chhHHHHHHHHHHCCCcEEEeccce--ecccCCcCHHHHHHHHHhhhhhhHHHHHHhChhhhh---cCcchhhcc
Q 011596 410 TVEDMDIAVRAHLRGWKFIFLNDVE--CQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIR---AKVYILSNT 479 (482)
Q Consensus 410 ~~ED~~l~~rl~~~G~ki~~~~~~~--~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~~---s~~~~~~k~ 479 (482)
++||...+.+++.+||+.+|++... ..+..|+++.+.+.|++||+.|.+|++......++. .++.+.+|+
T Consensus 458 itED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRL 532 (756)
T PLN02190 458 VAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRL 532 (756)
T ss_pred eechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHH
Confidence 8999999999999999999986443 568899999999999999999999998876655543 578887775
No 38
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.90 E-value=3.9e-22 Score=189.07 Aligned_cols=204 Identities=11% Similarity=0.087 Sum_probs=143.6
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc-CCCCCccccHHHH
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI-LRDGYKAGNLKSA 303 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~-~~~g~Ka~aln~a 303 (482)
|+||+||+++.|++||+|+.+|+||+ .++|+|+||+|+|.+.++++++.++++..+++++..... ..+.|.+.++|.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEG-TLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHH
Confidence 68999999999999999999999984 588999999999999999988777665555655543321 2233588899999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCC-ChHHHHHhhhhhhhhhhhhhhccccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NLLTRLQDINLSFHFEVEQQVNGVFI 382 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
++ .+++|||+++|+|+.++|+++.+++..+.+++. .++.+.......+. ....++...... .....+.... ..
T Consensus 80 ~~---~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 153 (219)
T cd06913 80 IA---QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWINTLTR-EQLLTQVYTS-HG 153 (219)
T ss_pred HH---hcCCCEEEEECCCccCChhHHHHHHHHHHhCCC-cEEEEEEEecCcccchhhHHHHHhcCH-HHHHHHHHhh-cC
Confidence 99 689999999999999999999999988876665 34444432222211 111111111000 0000000100 10
Q ss_pred cccccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEeccceecc
Q 011596 383 NFFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQC 437 (482)
Q Consensus 383 ~~~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~~~~~~~ 437 (482)
+ +.....+++||++++++|||++. ...||++++.|+.++|+++.+++++..+.
T Consensus 154 ~--~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~y 208 (219)
T cd06913 154 P--TVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLY 208 (219)
T ss_pred C--ccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceeeee
Confidence 1 12233467999999999999875 35699999999999999999999988543
No 39
>PLN02400 cellulose synthase
Probab=99.89 E-value=1.6e-22 Score=220.20 Aligned_cols=258 Identities=21% Similarity=0.273 Sum_probs=185.9
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH--------------------
Q 011596 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (482)
Q Consensus 218 ~~~P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~-------------------- 273 (482)
.++|.|+|+|+|-+.. -...+|+-|+++.|||.+++-++|.|||...-|-+.+.|.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRa 432 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCC
Confidence 3699999999997654 5888999999999999999999999998655544433321
Q ss_pred -------------------------------------HHHh-------hh------------------------------
Q 011596 274 -------------------------------------VLKW-------QE------------------------------ 279 (482)
Q Consensus 274 -------------------------------------~~~~-------~~------------------------------ 279 (482)
++.. ++
T Consensus 433 Pe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~ 512 (1085)
T PLN02400 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHS 512 (1085)
T ss_pred HHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCC
Confidence 0000 00
Q ss_pred --------CCCeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCC-ChHHHHHHHHHhhc---CCCe
Q 011596 280 --------AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKD---NEEL 342 (482)
Q Consensus 280 --------~~v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~---~p~v 342 (482)
.-.+++|+.|+++.| .||||||..++.+ ...++.||+.+|+|+.. +|+.+++.+..|.+ .+++
T Consensus 513 ~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~ 592 (1085)
T PLN02400 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKT 592 (1085)
T ss_pred CCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCcee
Confidence 012578888887755 7999999999864 35789999999999988 89999999998874 2379
Q ss_pred EEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHc--------------------
Q 011596 343 GLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS-------------------- 402 (482)
Q Consensus 343 ~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i-------------------- 402 (482)
+.||.++.+.+.+.+-. ..+....++-......++..+.+ +.|+++++||+++-..
T Consensus 593 afVQFPQrF~gi~~~D~--Y~n~~~vffdi~~~GldGlqGP~--YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~~~~~ 668 (1085)
T PLN02400 593 CYVQFPQRFDGIDLHDR--YANRNIVFFDINLKGLDGIQGPV--YVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCCG 668 (1085)
T ss_pred EEEeCCcccCCCCCCCC--cccceeEEeeccccccccCCCcc--ccccCcceeeeeeccCCCcccccccccccccccccc
Confidence 99999999987655321 11111111111122333333333 4566666666554210
Q ss_pred --------------------------------------------------------------------------------
Q 011596 403 -------------------------------------------------------------------------------- 402 (482)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (482)
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~ 748 (1085)
T PLN02400 669 SRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTN 748 (1085)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCC
Confidence
Q ss_pred ----------------------C---CCCCCCchhHHHHHHHHHHCCCcEEEec--cceecccCCcCHHHHHHHHHhhhh
Q 011596 403 ----------------------G---GWMERTTVEDMDIAVRAHLRGWKFIFLN--DVECQCELPESYEAYRKQQHRWHS 455 (482)
Q Consensus 403 ----------------------G---gf~~~~~~ED~~l~~rl~~~G~ki~~~~--~~~~~~~~p~t~~~~~~qr~RW~~ 455 (482)
| ||..++++||+..+++++.+||+.+|+. .+...+.+|+++.+++.||.||+.
T Consensus 749 ~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~ 828 (1085)
T PLN02400 749 PATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWAL 828 (1085)
T ss_pred cHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhh
Confidence 1 3444567899999999999999999995 445789999999999999999999
Q ss_pred hhHHHHHHhChhhh---hcCcchhhcc
Q 011596 456 GPMQLFRLCLPDII---RAKVYILSNT 479 (482)
Q Consensus 456 G~~q~~~~~~~~i~---~s~~~~~~k~ 479 (482)
|.+|+++.....++ +.++.+.+|+
T Consensus 829 G~lqI~~sr~nPl~~G~~~~L~l~QRL 855 (1085)
T PLN02400 829 GSIEILLSRHCPIWYGYNGRLKLLERL 855 (1085)
T ss_pred cchheeeccCCccccccCCCCCHHHHH
Confidence 99999997665565 3578888876
No 40
>PLN02436 cellulose synthase A
Probab=99.89 E-value=2.2e-22 Score=218.41 Aligned_cols=256 Identities=21% Similarity=0.312 Sum_probs=182.3
Q ss_pred CCCCeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH--------------------
Q 011596 218 GFFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE-------------------- 273 (482)
Q Consensus 218 ~~~P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~-------------------- 273 (482)
.++|.|+|+|+|-+.. -...+|+-|+++.|||.+++-++|.|||...-|-+.+.|.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRa 441 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRA 441 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 3699999999997654 5888999999999999999999999998655444333221
Q ss_pred -----------------------------------------HHH--------hh-h------------------------
Q 011596 274 -----------------------------------------VLK--------WQ-E------------------------ 279 (482)
Q Consensus 274 -----------------------------------------~~~--------~~-~------------------------ 279 (482)
.++ +. +
T Consensus 442 Pe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~ 521 (1094)
T PLN02436 442 PEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHS 521 (1094)
T ss_pred HHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCC
Confidence 010 00 0
Q ss_pred --------CCCeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCC-ChHHHHHHHHHhhcCC----C
Q 011596 280 --------AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNE----E 341 (482)
Q Consensus 280 --------~~v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~~p----~ 341 (482)
.-.+++|+.|+++.| .||||||..++.+ ...++.||+.+|+|+.. +|+.+++.+..|. || +
T Consensus 522 ~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfll-D~~~g~~ 600 (1094)
T PLN02436 522 GVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM-DPQSGKK 600 (1094)
T ss_pred CCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhc-CCccCCe
Confidence 002467777777654 8999999999864 35789999999999955 8999999999987 45 8
Q ss_pred eEEEeeeeeeecCCCCh-HHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHc------------------
Q 011596 342 LGLVQARWSFVNKDENL-LTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------ 402 (482)
Q Consensus 342 v~~V~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i------------------ 402 (482)
++.||.++.+.+.+.+- +.. ....++-......++..+.+ +.|+++++||+++-..
T Consensus 601 ~afVQFPQrF~gi~k~D~Y~n---~~~vffdi~~~GlDGlqGP~--YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~ 675 (1094)
T PLN02436 601 ICYVQFPQRFDGIDRHDRYSN---RNVVFFDINMKGLDGIQGPI--YVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPK 675 (1094)
T ss_pred eEEEcCCcccCCCCCCCcccc---cceEeeeccccccccCCCcc--ccccCceeeeeeeeccCCcccccccccccccccc
Confidence 99999999998876532 111 11111111112223333222 4555555555433210
Q ss_pred --------------------------------------------------------------------------------
Q 011596 403 -------------------------------------------------------------------------------- 402 (482)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (482)
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~ 755 (1094)
T PLN02436 676 WCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVP 755 (1094)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCC
Confidence
Q ss_pred --------------------------C---CCCCCCchhHHHHHHHHHHCCCcEEEe-ccce-ecccCCcCHHHHHHHHH
Q 011596 403 --------------------------G---GWMERTTVEDMDIAVRAHLRGWKFIFL-NDVE-CQCELPESYEAYRKQQH 451 (482)
Q Consensus 403 --------------------------G---gf~~~~~~ED~~l~~rl~~~G~ki~~~-~~~~-~~~~~p~t~~~~~~qr~ 451 (482)
| ||..++++||+..+++++.+||+.+|+ |+.. ..+..|+++.+++.||.
T Consensus 756 ~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~ 835 (1094)
T PLN02436 756 RNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVL 835 (1094)
T ss_pred CCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHH
Confidence 1 344456789999999999999999998 4443 57899999999999999
Q ss_pred hhhhhhHHHHHHhChhhh---hcCcchhhcc
Q 011596 452 RWHSGPMQLFRLCLPDII---RAKVYILSNT 479 (482)
Q Consensus 452 RW~~G~~q~~~~~~~~i~---~s~~~~~~k~ 479 (482)
||+.|.+|++......++ +.++.|.+|+
T Consensus 836 RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL 866 (1094)
T PLN02436 836 RWALGSVEIFLSRHCPIWYGYGGGLKWLERF 866 (1094)
T ss_pred HHhhcceeeeeccCCcchhcccccCCHHHHH
Confidence 999999999987655554 4578888876
No 41
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=2e-22 Score=186.81 Aligned_cols=192 Identities=19% Similarity=0.247 Sum_probs=146.9
Q ss_pred EEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHH
Q 011596 224 LVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 224 sViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
||+||+||+++.+++||.|+.+|++++ ++|+|+||+|+|.+.+++++... . + ++.... .++|++.++|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~~~~~----~-~--~~~~~~-~~~g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIKKYED----K-I--TYWISE-PDKGIYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHHHhHh----h-c--EEEEec-CCcCHHHHHHHH
Confidence 689999999999999999999999987 78999999999999888876533 1 1 222233 444599999999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
++ .+++|||+++|+|+.+.++++.+++..+..+++.+++.|.....+.+........ . ......... .
T Consensus 71 ~~---~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~---~~~~~~~~~-----~ 138 (202)
T cd06433 71 IA---LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR-P---PPFLDKFLL-----Y 138 (202)
T ss_pred HH---HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC-C---cchhhhHHh-----h
Confidence 99 5889999999999999999999999777778899999998766544332211110 0 000000111 1
Q ss_pred ccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEeccceecc
Q 011596 384 FFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQC 437 (482)
Q Consensus 384 ~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~~~~ 437 (482)
...+.++++++|+++++++|+|++. ...||.+++.++..+|+++.+.|.+.+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~~ 193 (202)
T cd06433 139 GMPICHQATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAAF 193 (202)
T ss_pred cCcccCcceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhhh
Confidence 1125677889999999999999875 56799999999999999999999888643
No 42
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.89 E-value=5.8e-22 Score=191.28 Aligned_cols=212 Identities=18% Similarity=0.173 Sum_probs=151.0
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|+|||+||+|||++.+..+++++.++......++|+|+||+|+|.+.+++++..++++...+ .+...+.+.| ++.
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v--~~~~~~~n~G-~~~ 83 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRI--LLRPRPGKLG-LGT 83 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcE--EEEecCCCCC-HHH
Confidence 4689999999999999999999988764322225899999999999999998887665443333 3333333444 899
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC-C--ChHHHHHhhhhhhhhhhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-E--NLLTRLQDINLSFHFEVEQ 375 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~-~--~~~~~~~~~~~~~~~~~~~ 375 (482)
++|.|++ .+++|||+++|+|+.++|++|.+++..+.+ ++.++|.|.....+.. . .+..+......... . .
T Consensus 84 a~n~g~~---~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~--~-~ 156 (243)
T PLN02726 84 AYIHGLK---HASGDFVVIMDADLSHHPKYLPSFIKKQRE-TGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVL--A-Q 156 (243)
T ss_pred HHHHHHH---HcCCCEEEEEcCCCCCCHHHHHHHHHHHHh-cCCcEEEEccccCCCCcCCccHHHHHHHHHHHHH--H-H
Confidence 9999999 689999999999999999999999999874 5778888864333221 1 12222111111100 0 1
Q ss_pred hhccccccccccccceEeeeHHHHHHcCCCCC-CCchhHHHHHHHHHHCCCcEEEeccceecccCCcC
Q 011596 376 QVNGVFINFFGFNGTAGVWRIKALEDSGGWME-RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (482)
Q Consensus 376 ~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~-~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t 442 (482)
.... .......|++.++||+++++++.+.+ ....+|.++.+++..+|+++.++|.....+...+|
T Consensus 157 ~~~~--~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s 222 (243)
T PLN02726 157 TLLW--PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGES 222 (243)
T ss_pred HHhC--CCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCcc
Confidence 1111 12223578888999999999975433 35667999999999999999999998876544444
No 43
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=2.7e-22 Score=188.42 Aligned_cols=199 Identities=18% Similarity=0.131 Sum_probs=147.4
Q ss_pred EEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHH
Q 011596 224 LVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 224 sViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
||+||+||+++.+.++|+|+++|+||+ ++|+|+||+|+|.+.+++++...+++ ..+.+.... .+.|+++++|.|
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~--~eiiVvddgS~d~t~~~~~~~~~~~~---~~~~~~~~~-~~~G~~~~~n~g 74 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKN--DELIISDDGSTDGTVEIIKEYIDKDP---FIIILIRNG-KNLGVARNFESL 74 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCCCcHHHHHHHHhcCC---ceEEEEeCC-CCccHHHHHHHH
Confidence 689999999999999999999999984 78999999999999998887766432 233333333 444599999999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
+. .+++|||+++|+|+.++|++|.+++..+..+++.+++++.....+.+................ ........ .
T Consensus 75 ~~---~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~ 148 (214)
T cd04196 75 LQ---AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKP--GTSFNNLL-F 148 (214)
T ss_pred HH---hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCC--ccCHHHHH-H
Confidence 98 689999999999999999999999999766788899998866554433221111100000000 00000000 1
Q ss_pred ccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEecccee
Q 011596 384 FFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (482)
Q Consensus 384 ~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~~ 435 (482)
...+.|+++++|+++++++|+|++. ...||.++..++.. |+++.+++++.+
T Consensus 149 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~ 200 (214)
T cd04196 149 QNVVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPLI 200 (214)
T ss_pred hCccCCceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhHH
Confidence 1125788999999999999999887 67899999998877 668999998764
No 44
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=1.1e-21 Score=183.45 Aligned_cols=176 Identities=16% Similarity=0.168 Sum_probs=143.2
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+||+++.+++||+|+++|++|+ .+|+|+||+|+|.+.+++++..+. ..+.+...+.+.| .+.++|.|+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~--~eiiivD~~s~d~t~~~~~~~~~~-----~~i~~~~~~~n~g-~~~~~n~~~ 72 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPP--DHIIVIDNASTDGTAEWLTSLGDL-----DNIVYLRLPENLG-GAGGFYEGV 72 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCC--ceEEEEECCCCcchHHHHHHhcCC-----CceEEEECccccc-hhhHHHHHH
Confidence 68999999999999999999999986 468999999999998888765432 2234444455555 788888888
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (482)
+.+..+++||++++|+|+.++|+++++++..+. +++++++.+.....+.
T Consensus 73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~------------------------------ 121 (202)
T cd04185 73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLVLDPDG------------------------------ 121 (202)
T ss_pred HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEecceeEcCCC------------------------------
Confidence 854446899999999999999999999999998 6888888776433221
Q ss_pred cccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEeccceecccCCcCH
Q 011596 385 FGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESY 443 (482)
Q Consensus 385 ~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~ 443 (482)
.++++++|+++++++|+|++. ...||.+++.++...|+++ ++|++.+++..+.+.
T Consensus 122 ---~~~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 122 ---SFVGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred ---ceEEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccccc
Confidence 235678999999999988765 4579999999999999999 999999888776553
No 45
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=99.88 E-value=1.2e-21 Score=212.74 Aligned_cols=256 Identities=23% Similarity=0.312 Sum_probs=178.4
Q ss_pred CCCeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH---------------------
Q 011596 219 FFPMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE--------------------- 273 (482)
Q Consensus 219 ~~P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~--------------------- 273 (482)
++|.|+|.|+|-+.. -...+|+-|+++.|||.+++-++|.|||...-|-+.+.|.
T Consensus 285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaP 364 (1044)
T PLN02915 285 RLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAP 364 (1044)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCH
Confidence 599999999997654 5888999999999999999999999998655544433321
Q ss_pred ----------------------------------------HHH---hhh-------------------------------
Q 011596 274 ----------------------------------------VLK---WQE------------------------------- 279 (482)
Q Consensus 274 ----------------------------------------~~~---~~~------------------------------- 279 (482)
.++ .++
T Consensus 365 e~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~ 444 (1044)
T PLN02915 365 EFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEG 444 (1044)
T ss_pred HHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCCC
Confidence 000 000
Q ss_pred -------CCCeEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCC-ChHHHHHHHHHhhc---CCCeE
Q 011596 280 -------AGANIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKD---NEELG 343 (482)
Q Consensus 280 -------~~v~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~---~p~v~ 343 (482)
.-.+++|+.|+++.| .||||||..++.+ ...++.||+.+|+|+.. +|+.+++.+-.|.+ .++++
T Consensus 445 ~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~a 524 (1044)
T PLN02915 445 ALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLC 524 (1044)
T ss_pred CcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeE
Confidence 002477877777655 7999999998863 45689999999999977 78999999988873 23799
Q ss_pred EEeeeeeeecCCCCh-HHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHH-----------------------
Q 011596 344 LVQARWSFVNKDENL-LTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKAL----------------------- 399 (482)
Q Consensus 344 ~V~~~~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l----------------------- 399 (482)
.||.++.+.+.+.+- +.. .+..++-......++..+.+ +.|+++++||+++
T Consensus 525 fVQFPQrF~gidk~D~Y~n---~~~Vffdi~~~GldGlqGP~--YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~ 599 (1044)
T PLN02915 525 YVQFPQRFDGIDRHDRYAN---RNVVFFDINMKGLDGIQGPV--YVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWC 599 (1044)
T ss_pred EEeCCcccCCCCCCCCcCc---cceEEEeeecccccccCCcc--cccCCceeeeeeecCcCCcccccccccccccccccc
Confidence 999999988765431 111 00000000011111221111 2333333333221
Q ss_pred --------------------------------------------------------------------------------
Q 011596 400 -------------------------------------------------------------------------------- 399 (482)
Q Consensus 400 -------------------------------------------------------------------------------- 399 (482)
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1044)
T PLN02915 600 CCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQK 679 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred ---------------------------------HHc--------------C---CCCCCCchhHHHHHHHHHHCCCcEEE
Q 011596 400 ---------------------------------EDS--------------G---GWMERTTVEDMDIAVRAHLRGWKFIF 429 (482)
Q Consensus 400 ---------------------------------~~i--------------G---gf~~~~~~ED~~l~~rl~~~G~ki~~ 429 (482)
++. | ||..++++||+..+++++.+||+.+|
T Consensus 680 ~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY 759 (1044)
T PLN02915 680 NFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVY 759 (1044)
T ss_pred hhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEEe
Confidence 110 1 35556789999999999999999999
Q ss_pred ecc--ceecccCCcCHHHHHHHHHhhhhhhHHHHHHhChhhh---hcCcchhhcc
Q 011596 430 LND--VECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDII---RAKVYILSNT 479 (482)
Q Consensus 430 ~~~--~~~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~i~---~s~~~~~~k~ 479 (482)
++. +...+.+|+++.+++.||.||+.|.+|+++.....++ ..++++.+|+
T Consensus 760 ~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL 814 (1044)
T PLN02915 760 CMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERL 814 (1044)
T ss_pred eCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHH
Confidence 953 3457999999999999999999999999997765555 3578888876
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.88 E-value=5.5e-22 Score=189.88 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=140.7
Q ss_pred EEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHH
Q 011596 225 VQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 225 ViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
++||+||++ +.+.+||+|+.+|. .+|+|+||++++++....+. ...++ .+...+.+.| +++++|.|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~-----~~iivvDn~s~~~~~~~~~~-----~~~~i--~~i~~~~n~G-~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQV-----DKVVVVDNSSGNDIELRLRL-----NSEKI--ELIHLGENLG-IAKALNIG 67 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccC-----CEEEEEeCCCCccHHHHhhc-----cCCcE--EEEECCCcee-hHHhhhHH
Confidence 589999999 99999999999982 46889999999887654432 12333 3444444555 99999999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHH---HHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTV---PHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGV 380 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv---~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (482)
++.+...++|||+++|+|+.++|++|.+++ ..+..+++++++++.....+.... ........+.. ...... ...
T Consensus 68 ~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~ 144 (237)
T cd02526 68 IKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGEN-SPGVRKSGYKL-RIQKEG-EEG 144 (237)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCee-ccceeccCccc-eecccc-cCC
Confidence 994322245999999999999999999995 555567888877765443332211 11111111100 000000 011
Q ss_pred cccccccccceEeeeHHHHHHcCCCCCCCc--hhHHHHHHHHHHCCCcEEEeccceecccCCcC
Q 011596 381 FINFFGFNGTAGVWRIKALEDSGGWMERTT--VEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (482)
Q Consensus 381 ~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~--~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t 442 (482)
........|+++++||++++++|||++... .||.+++.|+.++|+++.++|++.+++..+.+
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~ 208 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDK 208 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCc
Confidence 111222467888999999999999988643 58999999999999999999999998877665
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.87 E-value=4.3e-21 Score=175.98 Aligned_cols=176 Identities=21% Similarity=0.185 Sum_probs=134.5
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+||+++.+++||+|+.+|+|++ ++|+|+||+|++.+.+++++..+. .+.+++...+.+...++++++|.|+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~g~ 75 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILP--FEVIIADDGSTEETKELIEEFKSQ---FPIPIKHVWQEDEGFRKAKIRNKAI 75 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCC--CEEEEEeCCCchhHHHHHHHHHhh---cCCceEEEEcCCcchhHHHHHHHHH
Confidence 68999999999999999999999886 678999999999998888766542 2233333333333335888999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (482)
+ .+++|||+++|+|+.++|++|++++..+ ++++.++++... .+.....
T Consensus 76 ~---~a~g~~i~~lD~D~~~~~~~l~~~~~~~--~~~~~v~g~~~~-~~~~~~~-------------------------- 123 (182)
T cd06420 76 A---AAKGDYLIFIDGDCIPHPDFIADHIELA--EPGVFLSGSRVL-LNEKLTE-------------------------- 123 (182)
T ss_pred H---HhcCCEEEEEcCCcccCHHHHHHHHHHh--CCCcEEecceee-cccccce--------------------------
Confidence 9 6899999999999999999999999988 366655544433 2221110
Q ss_pred cccccceEeeeHHHHHHcCCCCCCCc---hhHHHHHHHHHHCCCcEEEec-cceecc
Q 011596 385 FGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLN-DVECQC 437 (482)
Q Consensus 385 ~~~~G~~~~~Rr~~l~~iGgf~~~~~---~ED~~l~~rl~~~G~ki~~~~-~~~~~~ 437 (482)
....|++++++|+.+.++|||++... .||.+++.|+.++|++...+. ++.+++
T Consensus 124 ~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h 180 (182)
T cd06420 124 RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH 180 (182)
T ss_pred eEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence 12567888899999999999988633 699999999999996666554 665554
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=2.7e-21 Score=173.64 Aligned_cols=163 Identities=17% Similarity=0.286 Sum_probs=138.8
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+||+.+.+.++++|+.+|+++. .+|+|+||++++.+.+.+++.. . ++.+...+.+. |++.++|.|+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~--~~iiivdd~s~~~~~~~~~~~~-----~--~~~~~~~~~~~-g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPD--FEVIVVDNASTDGSVELLRELF-----P--EVRLIRNGENL-GFGAGNNQGI 70 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCC--eEEEEEECCCCchHHHHHHHhC-----C--CeEEEecCCCc-ChHHHhhHHH
Confidence 68999999999999999999999855 6789999999998877766431 1 23333333444 4999999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (482)
+ .+++|+++++|+|+.++|+++.+++..+..+++++++++.
T Consensus 71 ~---~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------ 111 (166)
T cd04186 71 R---EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------ 111 (166)
T ss_pred h---hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------
Confidence 9 5799999999999999999999999988888898888776
Q ss_pred cccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEeccceeccc
Q 011596 385 FGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCE 438 (482)
Q Consensus 385 ~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~ 438 (482)
+.|+++++|+++++++|+|++. ...||.++..++..+|+++.+.|++.+++.
T Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 --VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred --CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 4689999999999999999876 356999999999999999999999987764
No 49
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.87 E-value=4.2e-21 Score=188.40 Aligned_cols=206 Identities=13% Similarity=0.113 Sum_probs=139.8
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|.|||+||+||+++.+.+||+|+++|+||+ +||+|+||+|++ .+.+++..+++.+. ++.+...+.+ +|.+.
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~--~EiIVVDDgS~~--~~~~~~~~~~~~~~--ri~~i~~~~n-~G~~~ 75 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQDYSN--WEMIIVDDCSTS--WEQLQQYVTALNDP--RITYIHNDIN-SGACA 75 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCC--eEEEEEECCCCC--HHHHHHHHHHcCCC--CEEEEECCCC-CCHHH
Confidence 46899999999999999999999999999987 789999999873 33455555443333 4444444444 45999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhh--hhhhhhhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINL--SFHFEVEQQ 376 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~~~ 376 (482)
++|.|++ .++||||+++|+|+.++|+.|++++..+...+..+++.+...... +.. ......... .........
T Consensus 76 a~N~gi~---~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~~~~~~~~ 150 (279)
T PRK10018 76 VRNQAIM---LAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQ-GEV-YSQPASLPLYPKSPYSRRLF 150 (279)
T ss_pred HHHHHHH---HcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeec-Ccc-cccccccCCCCCCCCCHHHH
Confidence 9999999 689999999999999999999999999876566666665532211 110 000000000 000000000
Q ss_pred hccccccccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEeccce-ecccCCcCH
Q 011596 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVE-CQCELPESY 443 (482)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~-~~~~~p~t~ 443 (482)
.. .++.|+..+.++..+.+ ++|++. ...||+++++|+..+|+....+|++. .++..+.+.
T Consensus 151 ~~------~n~ig~~~~~~~~~~~~-~~fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~~~~s~ 212 (279)
T PRK10018 151 YK------RNIIGNQVFTWAWRFKE-CLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEM 212 (279)
T ss_pred HH------hcCcCceeeehhhhhhh-cccCCCCCccccHHHHHHHHHhcCceEeeccceEEEEcCCCCc
Confidence 00 11346666666666655 578665 56899999999999999999999885 344434443
No 50
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.87 E-value=1e-20 Score=178.96 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=134.0
Q ss_pred EEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHH
Q 011596 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (482)
Q Consensus 223 VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~ 302 (482)
|||+||+||+++.+.++|+|+++|+|++ ++|+|+||+++|.+.+++++ . .+.+.. .+. +++.++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~--~evivvdd~s~d~~~~~~~~-------~--~~~~~~--~~~-g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLP--LEIIVVDGGSTDGTVAIARS-------A--GVVVIS--SPK-GRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCC--cEEEEEeCCCCccHHHHHhc-------C--CeEEEe--CCc-CHHHHHHH
Confidence 6899999999999999999999999855 67899999999998877653 2 233332 233 48899999
Q ss_pred HhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccc
Q 011596 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFI 382 (482)
Q Consensus 303 al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
|++ .+++|+|+++|+|+.++|+++++++..+.. +...+........+.. ........... .....
T Consensus 67 g~~---~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~- 131 (221)
T cd02522 67 GAA---AARGDWLLFLHADTRLPPDWDAAIIETLRA-DGAVAGAFRLRFDDPG--PRLRLLELGAN--------LRSRL- 131 (221)
T ss_pred HHH---hccCCEEEEEcCCCCCChhHHHHHHHHhhc-CCcEEEEEEeeecCCc--cchhhhhhccc--------ceecc-
Confidence 999 578999999999999999999999887764 4444444333333222 11111110000 00000
Q ss_pred cccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccceecc
Q 011596 383 NFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQC 437 (482)
Q Consensus 383 ~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~ 437 (482)
....+.+.++++|+++++++|||++....||++++.++...|+++.+ |...+.+
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~G~fd~~~~~ED~d~~~r~~~~G~~~~~-~~~~~~~ 185 (221)
T cd02522 132 FGLPYGDQGLFIRRELFEELGGFPELPLMEDVELVRRLRRRGRPALL-PSPVTTS 185 (221)
T ss_pred cCCCcCCceEEEEHHHHHHhCCCCccccccHHHHHHHHHhCCCEEEc-Cceeeec
Confidence 11124566899999999999999998889999999999999998877 6555443
No 51
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.87 E-value=1.2e-21 Score=176.19 Aligned_cols=180 Identities=31% Similarity=0.474 Sum_probs=133.9
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+||+++.+.+||+|+++|++++ ++|+|+||++++.+.+.+++..... ...+.+....++ .|++.++|.|+
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~--~~iivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~-~g~~~~~n~~~ 74 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPK--LEVIVVDDGSTDDTLEILEELAALY---IRRVLVVRDKEN-GGKAGALNAGL 74 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCc--eEEEEEeCCCccchHHHHHHHhccc---cceEEEEEeccc-CCchHHHHHHH
Confidence 68999999999999999999999965 6789999999999988777654422 123344434444 45999999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (482)
+ .+++|||+++|+|+.++|+++++++..+..+++++++++.........++........+.................
T Consensus 75 ~---~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T cd06423 75 R---HAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGV 151 (180)
T ss_pred H---hcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecce
Confidence 9 5799999999999999999999997777778999999998877665434433333222221111111111122234
Q ss_pred cccccceEeeeHHHHHHcCCCCCCCchhH
Q 011596 385 FGFNGTAGVWRIKALEDSGGWMERTTVED 413 (482)
Q Consensus 385 ~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED 413 (482)
..+.|+++++|+++++++|||++..+.||
T Consensus 152 ~~~~g~~~~~~~~~~~~~ggf~~~~~~eD 180 (180)
T cd06423 152 LVLSGAFGAFRREALREVGGWDEDTLTED 180 (180)
T ss_pred eecCchHHHHHHHHHHHhCCccccCcCCC
Confidence 45789999999999999999999988887
No 52
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.86 E-value=1e-20 Score=179.39 Aligned_cols=202 Identities=14% Similarity=0.119 Sum_probs=143.7
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+||+++.|.++|+|+.+|.+ ...++|+||||+|+|.+.++++++.+..+ .+ .+.... .++|++.++|.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i--~~~~~~-~n~G~~~a~n~g~ 74 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RV--RLIVRP-GKRGLGSAYIEGF 74 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCCCChHHHHHHHHHhCC--ce--EEEecC-CCCChHHHHHHHH
Confidence 689999999999999999999998 23488999999999999888877655322 23 333333 4445999999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC-CCh--HHHHHhhhhhhhhhhhhhhcccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD-ENL--LTRLQDINLSFHFEVEQQVNGVF 381 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 381 (482)
+ .+.+|||+++|+|+.++|++|..++..+.. ++.++|.|........ .++ ..+...... ....... ..
T Consensus 75 ~---~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~ 145 (224)
T cd06442 75 K---AARGDVIVVMDADLSHPPEYIPELLEAQLE-GGADLVIGSRYVEGGGVEGWGLKRKLISRGA---NLLARLL--LG 145 (224)
T ss_pred H---HcCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCEEEEeeeecCCccCCCcHHHHHHHHHH---HHHHHHH--cC
Confidence 9 688999999999999999999999999764 5566776654333221 111 111111000 0011111 11
Q ss_pred ccccccccceEeeeHHHHHHcC-CCCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCc
Q 011596 382 INFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPE 441 (482)
Q Consensus 382 ~~~~~~~G~~~~~Rr~~l~~iG-gf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~ 441 (482)
.......|+++++||++++++| ++......+|.++..++.+.|+++.++|.....+....
T Consensus 146 ~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~ 206 (224)
T cd06442 146 RKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGE 206 (224)
T ss_pred CCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCc
Confidence 1223357888899999999998 56555667788999999999999999998876654443
No 53
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.86 E-value=6.2e-21 Score=191.96 Aligned_cols=201 Identities=13% Similarity=0.168 Sum_probs=141.3
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|.|||+||+||+++.+++||+|+++|+|++ +||+|+||||+|.+.+++++..++. ..++ +.+ .+ ++|.+.
T Consensus 4 ~~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD~t~~i~~~~~~~~--~~i~--vi~-~~-n~G~~~ 75 (328)
T PRK10073 4 STPKLSIIIPLYNAGKDFRAFMESLIAQTWTA--LEIIIVNDGSTDNSVEIAKHYAENY--PHVR--LLH-QA-NAGVSV 75 (328)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHhCCCCC--eEEEEEeCCCCccHHHHHHHHHhhC--CCEE--EEE-CC-CCChHH
Confidence 35889999999999999999999999999986 7899999999999999888776643 2344 333 33 455999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHH------HHHhhhh-hhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLT------RLQDINL-SFHF 371 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~------~~~~~~~-~~~~ 371 (482)
+.|.|++ .++||||+|+|+|+.++|+++++++..+++ ++.+++.+.......+..... +...... ....
T Consensus 76 arN~gl~---~a~g~yi~flD~DD~~~p~~l~~l~~~~~~-~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (328)
T PRK10073 76 ARNTGLA---VATGKYVAFPDADDVVYPTMYETLMTMALE-DDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPD 151 (328)
T ss_pred HHHHHHH---hCCCCEEEEECCCCccChhHHHHHHHHHHh-CCCCEEEEccEEEEeCCCccccccccccccccceechHH
Confidence 9999999 689999999999999999999999998874 444555443222211111000 0000000 0000
Q ss_pred hhhhhhccccccccccccceEeeeHHHHHHcC-CCCCCCchhHHHHHHHHHHCCCcEEEeccce
Q 011596 372 EVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVE 434 (482)
Q Consensus 372 ~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG-gf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~ 434 (482)
........ ..+.....+.++||+.+++.| .|.+....||..+..++...+.++.+++++.
T Consensus 152 ~l~~~l~~---~~~~~~~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~l 212 (328)
T PRK10073 152 WLRMALSS---RRWTHVVWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSL 212 (328)
T ss_pred HHHHHHhh---CCCCccHhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCE
Confidence 00000000 011112335689999999987 4767667799999999999999999999887
No 54
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.86 E-value=3.1e-21 Score=179.26 Aligned_cols=142 Identities=29% Similarity=0.516 Sum_probs=124.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEe
Q 011596 314 FVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGV 393 (482)
Q Consensus 314 ~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 393 (482)
||+++|+|+.++||+++++++.++ +|+++++|++..+.+ .+++.++++..++.......+......+....+.|++++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999999999999 799999999998764 468888888887754444444444444455668999999
Q ss_pred eeHHHHHHcCCCC-CCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhhh
Q 011596 394 WRIKALEDSGGWM-ERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGP 457 (482)
Q Consensus 394 ~Rr~~l~~iGgf~-~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G~ 457 (482)
+|+++++++|||+ ...++||.+++.++.++||++.|+|++.++++.|.|+.++++||+||..|.
T Consensus 79 ~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 79 FRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred eeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999 778899999999999999999999999999999999999999999999995
No 55
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.84 E-value=1.3e-19 Score=175.41 Aligned_cols=190 Identities=10% Similarity=0.011 Sum_probs=131.4
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhC---CCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcc
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNL---DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q---~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka 297 (482)
|.||||||+||+++.+++||+|+.+| .++ .+||+|+||+|+|.+.+++++... +.++++ .. .++. |.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~--~~EiIVvDdgStD~t~~i~~~~~~---~~~i~~--i~-~~~~-G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGI--SFEWIVVDGGSNDGTREFLENLNG---IFNLRF--VS-EPDN-GIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCC--CEEEEEEECcCcccHHHHHHHhcc---cCCEEE--EE-CCCC-CHH
Confidence 67999999999999999999999853 344 488999999999999988876432 123333 33 3344 489
Q ss_pred ccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhh
Q 011596 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQV 377 (482)
Q Consensus 298 ~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 377 (482)
.++|.|++ .++||||+++|+|+.+.|+.++.+......++.. ++.|.......+.....+... ......
T Consensus 72 ~A~N~Gi~---~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~-------~~~~~~ 140 (248)
T PRK10063 72 DAMNKGIA---MAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNA-MIIGDALLDFGDGHKIKRSAK-------PGWYIY 140 (248)
T ss_pred HHHHHHHH---HcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCe-EEEeeeEEEcCCCcEEEEccC-------ChhHHh
Confidence 99999999 6899999999999999998765544443333444 444443322111111110000 000000
Q ss_pred ccccccccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEeccceec
Q 011596 378 NGVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQ 436 (482)
Q Consensus 378 ~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~~~ 436 (482)
....+++.+.+++++.++. |+|++. ..+||++++.|+..+|+++.++|...+.
T Consensus 141 -----~~~~~~~~~~~~~~~~~~~-~~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~ 194 (248)
T PRK10063 141 -----HSLPASHQAIFFPVSGLKK-WRYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSE 194 (248)
T ss_pred -----cCCCCCCcEEEEEHHHHhc-CCCCcccchHHhHHHHHHHHHcCCcEEEcCceeEE
Confidence 0112456788899999876 678765 5679999999999999999999988854
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.83 E-value=2.1e-19 Score=169.39 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=136.4
Q ss_pred EEeecCCchHHHHHHHHHHHhCCC--CCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHH
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDW--PKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKS 302 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~y--p~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~ 302 (482)
|+||+|||++.+.++|+++.+|.+ +...++|+|+||+|+|.+.++++++.++++. .+.+.....+.| +++++|.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~---~i~~i~~~~n~G-~~~a~~~ 76 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPA---LIRVLTLPKNRG-KGGAVRA 76 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC---cEEEEEcccCCC-cHHHHHH
Confidence 689999999999999999999865 2235889999999999999998877664332 223333444555 9999999
Q ss_pred HhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC----CChHHHHHhhhhhhhhhhhhhhc
Q 011596 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD----ENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 303 al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~----~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
|++ .+.+|||+++|+|+.++|+++.+++..+.+ +..+++.|........ ..+............. ....
T Consensus 77 g~~---~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 149 (211)
T cd04188 77 GML---AARGDYILFADADLATPFEELEKLEEALKT-SGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLV---RLLL 149 (211)
T ss_pred HHH---HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHH---HHHc
Confidence 999 688999999999999999999999999764 4445666654433222 1233222221111111 1111
Q ss_pred cccccccccccceEeeeHHHHHHcCCC-CCCCchhHHHHHHHHHHCCCcEEEecc
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGW-MERTTVEDMDIAVRAHLRGWKFIFLND 432 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf-~~~~~~ED~~l~~rl~~~G~ki~~~~~ 432 (482)
+. ..........+++|++++++++. ....+.+|.++..++.+.|+++.++|-
T Consensus 150 ~~--~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi 202 (211)
T cd04188 150 GL--GIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPV 202 (211)
T ss_pred CC--CCcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCc
Confidence 11 11111234578999999998653 233567899999999999999999983
No 57
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=179.78 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=152.7
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcccc
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~a 299 (482)
.|.++++|++||..+.+.+|+.++.+|+|+.+. |+++||+|.|.+.+.+++.. ..++.+....+|.| -+++
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~--iv~vDn~s~d~~~~~~~~~~------~~~v~~i~~~~NlG-~agg 72 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDV--IVVVDNGSTDGSLEALKARF------FPNVRLIENGENLG-FAGG 72 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcE--EEEccCCCCCCCHHHHHhhc------CCcEEEEEcCCCcc-chhh
Confidence 478999999999999999999999999999843 44899999999988776321 23455555555555 7888
Q ss_pred HHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhh--hhhhh--hhhhh
Q 011596 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDI--NLSFH--FEVEQ 375 (482)
Q Consensus 300 ln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~--~~~~~--~~~~~ 375 (482)
.|.|++.+....++|++++|.|+.++|++|.+++..++.++..+++++.................. ..... .....
T Consensus 73 ~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (305)
T COG1216 73 FNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLE 152 (305)
T ss_pred hhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccc
Confidence 899998653333349999999999999999999999999889888887765443221111111000 00000 00000
Q ss_pred hhc--ccccccc-ccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEeccceecccCC
Q 011596 376 QVN--GVFINFF-GFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELP 440 (482)
Q Consensus 376 ~~~--~~~~~~~-~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p 440 (482)
... ....... .++|+++++|+++++++|+|++. ...||.|++.|+.+.||++.++|.+.++|...
T Consensus 153 ~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g 222 (305)
T COG1216 153 IAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIG 222 (305)
T ss_pred ccccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 000 0000111 26899999999999999999986 45699999999999999999999999888543
No 58
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.81 E-value=6.8e-18 Score=170.13 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=141.0
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCC------CCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCC
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLD------WPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILR 292 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~------yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~ 292 (482)
..|.+||+||+|||++.+.++++++.++. .+...+||+||||||+|.|.++++++.+++...+.++.+...+.+
T Consensus 68 ~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 68 SDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 46789999999999999999999987642 334468999999999999999988876643111223333333444
Q ss_pred CCCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc--CCCeEEEeeeeeeecCC-----CChHHHHHhh
Q 011596 293 DGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD--NEELGLVQARWSFVNKD-----ENLLTRLQDI 365 (482)
Q Consensus 293 ~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~--~p~v~~V~~~~~~~n~~-----~~~~~~~~~~ 365 (482)
. ||+.|+|.|++ .+++|+|+++|+|+..+|+.+.+++..+.+ +++.++|.|.......+ .++..+....
T Consensus 148 ~-G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 148 K-GKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred C-ChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 4 49999999999 588999999999999999999999998864 46788888875432221 1233322221
Q ss_pred hhhhhhhhhhhhccccccccccccceEeeeHHHHHHcC-CCCCCCchhHHHHHHHHHHCCCcEEEeccce
Q 011596 366 NLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVE 434 (482)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG-gf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~ 434 (482)
.+. ... ....+. +..-.....-+++|++++.+= ........-|.++..++.+.|+++..+|-..
T Consensus 224 ~~~--~l~-~~~~~~--~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 224 GFH--FIV-NTICGT--NLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred HHH--HHH-HHHcCC--CcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceee
Confidence 111 111 111111 111122334689999998761 1111234568999999999999999998754
No 59
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.80 E-value=4.7e-19 Score=162.08 Aligned_cols=163 Identities=24% Similarity=0.353 Sum_probs=131.7
Q ss_pred EEEEeccCCCCCccccHHHHhhhccc-CCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHH
Q 011596 284 IVYRHRILRDGYKAGNLKSAMNCSYV-KDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRL 362 (482)
Q Consensus 284 vv~~~~~~~~g~Ka~aln~al~~~~~-a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~ 362 (482)
++....+...++|.+||..+++ . +++|+|++.|+|+.++|++|.+++..++ +|++++|++.+...+. .++.+.+
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~---~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~-~p~vglVt~~~~~~~~-~~~~~~l 80 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLE---AGAKYDYLVISDSDIRVPPDYLRELVAPLA-DPGVGLVTGLPRGVPA-RGFWSRL 80 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHH---hhCCCCEEEEECCCeeECHHHHHHHHHHHh-CCCCcEEEecccccCC-cCHHHHH
Confidence 5544455556679999999999 5 8999999999999999999999999998 4999999998776555 4676666
Q ss_pred HhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCC--CCchhHHHHHHHHHHCCCcEEEeccceecccCC
Q 011596 363 QDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWME--RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELP 440 (482)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~--~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p 440 (482)
......+....... .....++.|.++++||++++++|||.. +.++||+.++.++.++|+++.+.+.+.+....+
T Consensus 81 ~~~~~~~~~~~~~a----~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 81 EAAFFNFLPGVLQA----LGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred HHHHHhHHHHHHHH----hcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 54443333333222 223334789999999999999999965 588999999999999999999999988777776
Q ss_pred ----cCHHHHHHHHHhhhh
Q 011596 441 ----ESYEAYRKQQHRWHS 455 (482)
Q Consensus 441 ----~t~~~~~~qr~RW~~ 455 (482)
.+++++++++.||++
T Consensus 157 ~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 157 RTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred ccccccHHHHHHHHHhhcC
Confidence 479999999999974
No 60
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.77 E-value=2.9e-18 Score=165.97 Aligned_cols=231 Identities=16% Similarity=0.221 Sum_probs=187.3
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
.+|.|||+.|.-+-++.+...+++....+|+. +|+..+-+++||...++++.+..+||.-..++++--..-+...|.+
T Consensus 83 ~LPgVSiikPl~G~d~nl~~Nlesffts~Y~~--~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKIn 160 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVDPNLYHNLESFFTSQYHK--YELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKIN 160 (431)
T ss_pred CCCCceEEeecccCCchhHHhHHHHHhhccCc--eEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhh
Confidence 58999999999999999999999999999996 5566666667777778899999999977777776544445557999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVN 378 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (482)
|+--|.+ .+++|+|++.|+|..+.||.+..|+..|..+.+.+.|++...+..+++ +-..+....+....... ...
T Consensus 161 N~mpgy~---~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~G-f~atle~~~fgTsh~r~-yl~ 235 (431)
T KOG2547|consen 161 NMMPGYR---AAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQG-FDATLEQVYFGTSHPRI-YLS 235 (431)
T ss_pred ccCHHHH---HhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeecccc-chhhhhheeeccCCceE-EEc
Confidence 9988998 799999999999999999999999999998889999998887777654 32323333332222222 223
Q ss_pred cccccccccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhhh
Q 011596 379 GVFINFFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHSG 456 (482)
Q Consensus 379 ~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~G 456 (482)
+...++.|.+|..+++|++++++.||+... .+.||+.....+..+||+..+...+.-++....+...+.+|..||..-
T Consensus 236 ~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist~palQnSas~~mssf~~Ri~rwvkL 315 (431)
T KOG2547|consen 236 GNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAISTHPALQNSASVTMSSFLDRIIRWVKL 315 (431)
T ss_pred cccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHHHHHhhhh
Confidence 334456667899999999999999998544 678999999999999999999888887778888899999999999864
No 61
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.77 E-value=2.9e-18 Score=157.45 Aligned_cols=180 Identities=16% Similarity=0.137 Sum_probs=128.4
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||+||+++.+.+||+|+.+|.|+....+|+|+||++++.+.+++++..++++ .+.+.....+.| +++++|.|+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~----~~~~~~~~~n~G-~~~a~n~g~ 75 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP----RVRVIRLSRNFG-KGAAVRAGF 75 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC----CeEEEEccCCCC-ccHHHHHHH
Confidence 689999999999999999999998544688999999999999988887766443 223333445555 999999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC--CChHHHHHhhhhhhhhhhhhhhccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD--ENLLTRLQDINLSFHFEVEQQVNGVFI 382 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (482)
+ .+.+||++++|+|+.+.|++|++++..+.. ++.+++.+.....+.. .+...++....+. ...... ...
T Consensus 76 ~---~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~ 146 (185)
T cd04179 76 K---AARGDIVVTMDADLQHPPEDIPKLLEKLLE-GGADVVIGSRFVRGGGAGMPLLRRLGSRLFN--FLIRLL---LGV 146 (185)
T ss_pred H---HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeecCCCcccchHHHHHHHHHHH--HHHHHH---cCC
Confidence 9 588899999999999999999999998664 5567777776544432 2233322211111 111111 111
Q ss_pred cccccccceEeeeHHHHHHc--CCCCCCCchhHHHHHHH
Q 011596 383 NFFGFNGTAGVWRIKALEDS--GGWMERTTVEDMDIAVR 419 (482)
Q Consensus 383 ~~~~~~G~~~~~Rr~~l~~i--Ggf~~~~~~ED~~l~~r 419 (482)
......|+++++||++++++ |++.. .+.+|+++++|
T Consensus 147 ~~~~~~~~~~~~~r~~~~~i~~~~~~~-~~~~~~~~~~~ 184 (185)
T cd04179 147 RISDTQSGFRLFRREVLEALLSLLESN-GFEFGLELLVG 184 (185)
T ss_pred CCcCCCCceeeeHHHHHHHHHhhcccc-CcceeeEeeec
Confidence 23335788899999999999 45533 56677777655
No 62
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.77 E-value=1.9e-17 Score=163.34 Aligned_cols=205 Identities=17% Similarity=0.247 Sum_probs=136.8
Q ss_pred EEEeecCCch------HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCC--CC
Q 011596 224 LVQIPMCNEK------EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRD--GY 295 (482)
Q Consensus 224 sViIP~yne~------~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~--g~ 295 (482)
|||||++++. +.+..++.++..+.- +..++|||+||++++...+.+++..+ ..+.. .++...... =+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~-~~~~eiIvvd~~s~~~~~~~l~~~~~---~~~~~-~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQS-DPDFEIIVVDDGSSDEFDEELKKLCE---KNGFI-RYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCC-CCCEEEEEEECCCchhHHHHHHHHHh---ccCce-EEEEcCCCCCCcC
Confidence 6999999998 356666777776432 34689999999999988666666655 33333 122222222 25
Q ss_pred ccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHH---HhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhh
Q 011596 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVP---HFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFE 372 (482)
Q Consensus 296 Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~---~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~ 372 (482)
++.++|.|++ .+++|+|+|+|+|+.++|+++.+++. .+..+++. .+..+..+.+...+... ...........
T Consensus 76 ~a~arN~g~~---~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~-~~~~p~~yl~~~~~~~~-~~~~~~~~~~~ 150 (281)
T PF10111_consen 76 RAKARNIGAK---YARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNA-FLVYPCLYLSEEGSEKF-YSQFKNLWDHE 150 (281)
T ss_pred HHHHHHHHHH---HcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCc-eEEEeeeeccchhhHHH-hhcchhcchHH
Confidence 8999999999 68999999999999999999999999 56654433 33333333433222110 00000000111
Q ss_pred hh-hhhc--cccccccccccceEeeeHHHHHHcCCCCCCC---chhHHHHHHHHHHCCCcEEEeccceeccc
Q 011596 373 VE-QQVN--GVFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDVECQCE 438 (482)
Q Consensus 373 ~~-~~~~--~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~---~~ED~~l~~rl~~~G~ki~~~~~~~~~~~ 438 (482)
.. .... ..........|++++++|+.+.++|||+|.. ..||.|++.|+.+.|.++...++..+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~ 222 (281)
T PF10111_consen 151 FLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHS 222 (281)
T ss_pred HHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccc
Confidence 11 1111 1111222356799999999999999999974 46999999999999999999998887553
No 63
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.77 E-value=3.9e-19 Score=159.16 Aligned_cols=169 Identities=21% Similarity=0.271 Sum_probs=114.1
Q ss_pred EEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHH
Q 011596 224 LVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 224 sViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
||+||+||+.+.+.++|+|+.+|++++ .+|+|+||++++.+.+++++..+ .+.++.+...+.+. |++.++|.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~~~~~~~~~~~----~~~~i~~i~~~~n~-g~~~~~n~~ 73 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPD--FEIIVVDDGSTDETEEILEEYAE----SDPNIRYIRNPENL-GFSAARNRG 73 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCE--EEEEEEECS-SSSHHHHHHHHHC----CSTTEEEEEHCCCS-HHHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCC--EEEEEeccccccccccccccccc----cccccccccccccc-ccccccccc
Confidence 799999999999999999999996655 77999999999999888876643 34555666566555 499999999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
++ .++++|++++|+|+.++|++|++++..+.+++. +++.+.......+............................
T Consensus 74 ~~---~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 74 IK---HAKGEYILFLDDDDIISPDWLEELVEALEKNPP-DVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HH---H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTT-EEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred cc---ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCC-cEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 99 689999999999999999999999999997544 34444433333322211111110000000111111122223
Q ss_pred ccccccceEeeeHHHHHHcC
Q 011596 384 FFGFNGTAGVWRIKALEDSG 403 (482)
Q Consensus 384 ~~~~~G~~~~~Rr~~l~~iG 403 (482)
...+.|++.++||++++++|
T Consensus 150 ~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp SSEESSSCEEEEEHHHHHCH
T ss_pred cccccccEEEEEHHHHHhhC
Confidence 44478999999999999975
No 64
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.77 E-value=5.5e-18 Score=167.09 Aligned_cols=198 Identities=15% Similarity=0.110 Sum_probs=131.7
Q ss_pred ecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHH--HHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 228 PMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPT--AQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 228 P~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~--t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
.+||++ +.++++++|+.+|. .+|+||||+|+++ +.++. + ...++.+.+.+.+.| .++++|.|+
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~~~~~~~~~~----~----~~~~i~~i~~~~N~G-~a~a~N~Gi 66 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV-----DRIIAVDNSPHSDQPLKNAR----L----RGQKIALIHLGDNQG-IAGAQNQGL 66 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC-----CEEEEEECcCCCcHhHHHHh----c----cCCCeEEEECCCCcc-hHHHHHHHH
Confidence 379975 89999999999985 3588999987543 33222 2 112344444455555 899999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCC-CeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNE-ELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p-~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
+.+...++|||+++|+|+.++++++++++..++.++ +++++++....... ......................... ..
T Consensus 67 ~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 144 (281)
T TIGR01556 67 DASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGT-SRRLPAIHLDGLLLRQISLDGLTTP-QK 144 (281)
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCC-cccCCceeecccceeeecccccCCc-ee
Confidence 965445899999999999999999999999998655 77887765422211 1111100000000000000000000 01
Q ss_pred ccccccceEeeeHHHHHHcCCCCCCC--chhHHHHHHHHHHCCCcEEEeccceecccCCc
Q 011596 384 FFGFNGTAGVWRIKALEDSGGWMERT--TVEDMDIAVRAHLRGWKFIFLNDVECQCELPE 441 (482)
Q Consensus 384 ~~~~~G~~~~~Rr~~l~~iGgf~~~~--~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~ 441 (482)
...+.++++++|+++++++|+|++.. -.||.|+++|+.++|+++.++|++..++....
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~ 204 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGD 204 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCC
Confidence 11134566789999999999998873 35899999999999999999999998776543
No 65
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=99.75 E-value=5e-19 Score=187.26 Aligned_cols=192 Identities=25% Similarity=0.395 Sum_probs=140.2
Q ss_pred eEEEEeccCCCC----CccccHHHHhhhc-ccCCceEEEEEcCCCCC-ChHHHHHHHHHhhcCCC----eEEEeeeeeee
Q 011596 283 NIVYRHRILRDG----YKAGNLKSAMNCS-YVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEE----LGLVQARWSFV 352 (482)
Q Consensus 283 ~vv~~~~~~~~g----~Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~~p~----v~~V~~~~~~~ 352 (482)
+++|+.|+++.| .|+||||..++.+ ...+++||+.+|+|... +|+.+++.+..|. ||+ ++.||.++.+.
T Consensus 167 ~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~-d~~~g~~~~~vQfpq~f~ 245 (720)
T PF03552_consen 167 MLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFM-DPKIGKKIAFVQFPQRFD 245 (720)
T ss_pred eEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhc-cCCCCCeeEEEeCCceeC
Confidence 578888877654 7999999988753 35789999999999955 7999999999987 465 99999999998
Q ss_pred cCCCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHc------------------------------
Q 011596 353 NKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS------------------------------ 402 (482)
Q Consensus 353 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i------------------------------ 402 (482)
|.+.+-. ..+....+.-...+..++..+.+ +.|+++++||+++-..
T Consensus 246 ~i~~~d~--y~~~~~~~~~~~~~g~dG~~gp~--y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~~ 321 (720)
T PF03552_consen 246 GIDKNDR--YGNQNRVFFDINMRGLDGLQGPF--YVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSKK 321 (720)
T ss_pred CCCcCCC--CCccceeeeeccccccccCCCce--eeecCcceechhhhCCCCCchhcccCcceeeeecccCCcccccccc
Confidence 8755321 11111111111123333333333 5677777777766110
Q ss_pred --------------------------------------------------------------------------------
Q 011596 403 -------------------------------------------------------------------------------- 402 (482)
Q Consensus 403 -------------------------------------------------------------------------------- 402 (482)
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~~V~ 401 (720)
T PF03552_consen 322 KPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAIHVA 401 (720)
T ss_pred cchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHHHHh
Confidence
Q ss_pred ----------C---CCCCCCchhHHHHHHHHHHCCCcEEEeccce--ecccCCcCHHHHHHHHHhhhhhhHHHHHHhChh
Q 011596 403 ----------G---GWMERTTVEDMDIAVRAHLRGWKFIFLNDVE--CQCELPESYEAYRKQQHRWHSGPMQLFRLCLPD 467 (482)
Q Consensus 403 ----------G---gf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~--~~~~~p~t~~~~~~qr~RW~~G~~q~~~~~~~~ 467 (482)
| ||..++++||+..+++++++||+.+|+.... ..+..|.++.+.+.|+.||+.|.+|++......
T Consensus 402 sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~~P 481 (720)
T PF03552_consen 402 SCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRHCP 481 (720)
T ss_pred cCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcCCc
Confidence 1 2333457899999999999999999987543 778999999999999999999999999877776
Q ss_pred hhhc---Ccchhhcc
Q 011596 468 IIRA---KVYILSNT 479 (482)
Q Consensus 468 i~~s---~~~~~~k~ 479 (482)
++.. ++++.+++
T Consensus 482 l~~g~~~rL~~lQrL 496 (720)
T PF03552_consen 482 LWYGYGGRLKFLQRL 496 (720)
T ss_pred hhccCCCCCcHHHHH
Confidence 6654 78887765
No 66
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.74 E-value=4.4e-17 Score=162.15 Aligned_cols=198 Identities=15% Similarity=0.091 Sum_probs=130.9
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
..|+|||+||+|||++.|.++|+++.+|.++....+|+|+||+|+|.|.+++++...+... ...++ .....+.||+.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~--~~~~~n~Gkg~ 105 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVS-REEIL--PELPPRPGKGE 105 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhh--hccccCCCHHH
Confidence 4689999999999999999999999988753224689999999999998888754221100 00111 11123445999
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCC-CChHHHHHHHHHhhcCCCeEEEeeeeeeec--------CCCChHHHHHh-hhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQ-PNPDFLRRTVPHFKDNEELGLVQARWSFVN--------KDENLLTRLQD-INLS 368 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~-~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n--------~~~~~~~~~~~-~~~~ 368 (482)
|+|.|++ .+++|||+++|+|+. ++|+++.+++..+..+|++++|.+...... ...+..+++.. ..+.
T Consensus 106 A~~~g~~---~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~ 182 (306)
T PRK13915 106 ALWRSLA---ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLN 182 (306)
T ss_pred HHHHHHH---hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHH
Confidence 9999998 689999999999996 899999999999976789999988532211 00111111110 0010
Q ss_pred hhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHH-CCC-cEEEec
Q 011596 369 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHL-RGW-KFIFLN 431 (482)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~-~G~-ki~~~~ 431 (482)
..... ........+...++||++++++. |.+ .+..|.++...+.. .|. ++..++
T Consensus 183 ~~~~~-------l~~i~dp~sG~~a~rr~~l~~l~-~~~-~yg~e~~~l~~~~~~~g~~~i~~V~ 238 (306)
T PRK13915 183 LLRPE-------LAGFVQPLGGEYAGRRELLESLP-FVP-GYGVEIGLLIDTLDRLGLDAIAQVD 238 (306)
T ss_pred HHHHh-------hhcccCcchHhHHHHHHHHHhCC-CCC-CCeehHHHHHHHHHHhCcCceEEEE
Confidence 00000 00111122334789999999984 654 35567888888764 576 676666
No 67
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.74 E-value=4.8e-17 Score=149.27 Aligned_cols=177 Identities=16% Similarity=0.160 Sum_probs=122.9
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCC-CCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHH
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWP-KSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp-~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
|+||+||+++.+.++++++.++... ...++|+|+||+|+|.+.+++++..++.+ ++.+....++.| +++++|.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~i~~i~~~~n~G-~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP----RVKVIRLSRNFG-QQAALLAG 75 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC----CEEEEEecCCCC-cHHHHHHH
Confidence 6899999999999998888764431 22478999999999999888877655432 334443344444 99999999
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhcccccc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFIN 383 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (482)
++ .+.+|||+++|+|+.++|++|++++..+. ++.++|.+.....+ .++..+.....+.... ..... ..
T Consensus 76 ~~---~a~~d~i~~~D~D~~~~~~~l~~l~~~~~--~~~~~v~g~~~~~~--~~~~~~~~~~~~~~~~---~~~~~--~~ 143 (181)
T cd04187 76 LD---HARGDAVITMDADLQDPPELIPEMLAKWE--EGYDVVYGVRKNRK--ESWLKRLTSKLFYRLI---NKLSG--VD 143 (181)
T ss_pred HH---hcCCCEEEEEeCCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCc--chHHHHHHHHHHHHHH---HHHcC--CC
Confidence 99 58899999999999999999999999864 45566776654433 3443333222111111 11111 12
Q ss_pred ccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHH
Q 011596 384 FFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAV 418 (482)
Q Consensus 384 ~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~ 418 (482)
.....|+..++||++++++|+|++. ...+|.+.++
T Consensus 144 ~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~~~~~ 179 (181)
T cd04187 144 IPDNGGDFRLMDRKVVDALLLLPERHRFLRGLIAWV 179 (181)
T ss_pred CCCCCCCEEEEcHHHHHHHHhcCCCCccHHHHHHHh
Confidence 2224677889999999999999876 5567776654
No 68
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.70 E-value=1.8e-15 Score=152.15 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=128.6
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHh---CCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCc
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVCN---LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll~---q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~K 296 (482)
.+++||+||+|||++.+.++++++.+ |..+ .+||+|+||+|+|.|.+++++..+ ..+.+++..... ++.||
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~--~~EIIvVDDgS~D~T~~il~~~~~---~~~~~v~~i~~~-~n~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGK--EYEILLIDDGSSDNSAEMLVEAAQ---APDSHIVAILLN-RNYGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCC--CEEEEEEeCCCCCcHHHHHHHHHh---hcCCcEEEEEeC-CCCCH
Confidence 46799999999999999999887753 4333 478999999999999998876554 223444443333 34459
Q ss_pred cccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhh
Q 011596 297 AGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQ 376 (482)
Q Consensus 297 a~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 376 (482)
+.|++.|++ .+++|+++++|+|.+.+|+.+.+++..+++ +.++|.+... +...+++.+..+..+. .....
T Consensus 79 ~~A~~~G~~---~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~--~~DvV~~~r~--~~~~~~~r~~~s~~~~---~l~~~ 148 (325)
T PRK10714 79 HSAIMAGFS---HVTGDLIITLDADLQNPPEEIPRLVAKADE--GYDVVGTVRQ--NRQDSWFRKTASKMIN---RLIQR 148 (325)
T ss_pred HHHHHHHHH---hCCCCEEEEECCCCCCCHHHHHHHHHHHHh--hCCEEEEEEc--CCCCcHHHHHHHHHHH---HHHHH
Confidence 999999999 589999999999999999999999999974 3456766542 2334444443322111 11111
Q ss_pred hccccccccccccceEeeeHHHHHHcCCCCCCCchhHHHHHHHHHHCCCcEEEeccce
Q 011596 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVE 434 (482)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~ 434 (482)
..+. .........-+++|++++++-.+.+.. ..+...+...|+++..+|-..
T Consensus 149 ~~g~--~~~d~~~gfr~~~r~~~~~l~~~~~~~----~~~~~l~~~~g~~i~evpv~~ 200 (325)
T PRK10714 149 TTGK--AMGDYGCMLRAYRRHIVDAMLHCHERS----TFIPILANTFARRAIEIPVHH 200 (325)
T ss_pred HcCC--CCCCCCcCeEEEcHHHHHHHHHCCCCc----cHHHHHHHHcCCCEEEEEeEe
Confidence 1111 111122234589999999874433322 123345567799999888654
No 69
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.64 E-value=4.8e-15 Score=129.69 Aligned_cols=153 Identities=22% Similarity=0.291 Sum_probs=123.9
Q ss_pred EEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 225 VQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 225 ViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
|+||++|+.+.+..+++|+.+|+++. .+|+|+||++++.+.+.+++.... .......... .+++++.++|.++
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~g~~~~~~~~~ 73 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPN--FEVIVVDDGSTDGTLEILEEYAKK----DPRVIRVINE-ENQGLAAARNAGL 73 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccc--eEEEEEeCCCCccHHHHHHHHHhc----CCCeEEEEec-CCCChHHHHHHHH
Confidence 68999999999999999999999855 668899999998888777655432 1223333333 4445999999999
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINF 384 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (482)
+ ..++|+++++|+|..++|+++..++..+..+++.+++++.
T Consensus 74 ~---~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------ 114 (156)
T cd00761 74 K---AARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------------------------ 114 (156)
T ss_pred H---HhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------------------------
Confidence 9 4689999999999999999999987777667888888776
Q ss_pred cccccceEeeeHHHHHHcCCCCCCCc--hhHHHHHHHHHHCCCcEE
Q 011596 385 FGFNGTAGVWRIKALEDSGGWMERTT--VEDMDIAVRAHLRGWKFI 428 (482)
Q Consensus 385 ~~~~G~~~~~Rr~~l~~iGgf~~~~~--~ED~~l~~rl~~~G~ki~ 428 (482)
++++++++.++++|++.+... .||.++..++...|+...
T Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~~ 155 (156)
T cd00761 115 -----GNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAF 155 (156)
T ss_pred -----chheeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhccccc
Confidence 578899999999999876643 599999999999887653
No 70
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=128.57 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=138.4
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhCCCC--CCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWP--KSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q~yp--~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
++.||++|+|||.+.+.-++.-+.+ ..+ ..+.+|||+||+|.|.|.+.+++++..+...++. ..+|....| -+.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~-~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~--l~pR~~klG-Lgt 78 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAK-YMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNIL--LKPRTKKLG-LGT 78 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHh-hhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEE--EEeccCccc-chH
Confidence 5689999999999777644443332 122 3368899999999999999999988877665554 445555555 677
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCC-Ch--HHHHHhhhhhhhhhhhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NL--LTRLQDINLSFHFEVEQ 375 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~-~~--~~~~~~~~~~~~~~~~~ 375 (482)
|.-+|+. .++++|++++|||-..+|.++.+++...++ .+.++|.|.....+..- .| ..+..+...++. .+
T Consensus 79 Ay~hgl~---~a~g~fiviMDaDlsHhPk~ipe~i~lq~~-~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~l---a~ 151 (238)
T KOG2978|consen 79 AYIHGLK---HATGDFIVIMDADLSHHPKFIPEFIRLQKE-GNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFL---AR 151 (238)
T ss_pred HHHhhhh---hccCCeEEEEeCccCCCchhHHHHHHHhhc-cCcceeeeeeEcCCCceecchhhHHHHhhhhHHH---HH
Confidence 8888998 589999999999999999999999998874 67788888765443321 11 111111111100 01
Q ss_pred hhccccccccccccceEeeeHHHHHHcCC-CCCCCchhHHHHHHHHHHCCCcEEEecccee
Q 011596 376 QVNGVFINFFGFNGTAGVWRIKALEDSGG-WMERTTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (482)
Q Consensus 376 ~~~~~~~~~~~~~G~~~~~Rr~~l~~iGg-f~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~ 435 (482)
..- ..++..++|++-++|+++++..-. -......--+++..|+.++||.+.-+|-+.+
T Consensus 152 ~ll--~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFv 210 (238)
T KOG2978|consen 152 ILL--NPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFV 210 (238)
T ss_pred Hhc--cCCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEE
Confidence 111 123444799999999999987510 0111233467888899999999999887773
No 71
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=99.58 E-value=3.1e-14 Score=153.42 Aligned_cols=150 Identities=20% Similarity=0.369 Sum_probs=133.5
Q ss_pred cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccc
Q 011596 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFN 388 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (482)
...-+||+++|+|+.+.|+.+.+|+..|+.||+||.++| ...+..++++.-.|+++|...........+.++.+.+..
T Consensus 438 ~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG--~I~~~~~~w~v~~Q~FEY~Ish~l~Ka~ESvFG~VsclP 515 (862)
T KOG2571|consen 438 MPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG--RILNKGGSWVVAYQNFEYAISHNLQKATESVFGCVSCLP 515 (862)
T ss_pred cCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc--ccccCCCceEEeHHHHHHHHHHHHHHhhhhhceeEEecC
Confidence 355679999999999999999999999999999999999 567777888988999999999999999999999999999
Q ss_pred cceEeeeHHHHHHcC----------C---CCCCCchhHHHHHHHHHHCCCcEEEeccceecccCCcCHHHHHHHHHhhhh
Q 011596 389 GTAGVWRIKALEDSG----------G---WMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPESYEAYRKQQHRWHS 455 (482)
Q Consensus 389 G~~~~~Rr~~l~~iG----------g---f~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~~~~~~qr~RW~~ 455 (482)
|+.+++|.+++.+-- + ......+||..++.++..+||.+.|++.+.+.++.|+++.+++.||+||..
T Consensus 516 Gcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~ 595 (862)
T KOG2571|consen 516 GCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLN 595 (862)
T ss_pred chhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhcc
Confidence 999999998887631 0 111247899999999999999999999999999999999999999999999
Q ss_pred hhHHH
Q 011596 456 GPMQL 460 (482)
Q Consensus 456 G~~q~ 460 (482)
|.+..
T Consensus 596 s~f~~ 600 (862)
T KOG2571|consen 596 SIFNA 600 (862)
T ss_pred cchhH
Confidence 94443
No 72
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.49 E-value=3.1e-13 Score=129.27 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=87.7
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHH
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln 301 (482)
+|||+||+|||++.+++||+|+..|. -+|+|+||+|+|.|.++++ ..+++++.. .+++.+.+.|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~-----~eiivvD~gStD~t~~i~~-------~~~~~v~~~----~~~g~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV-----DEIIVVDSGSTDRTVEIAK-------EYGAKVYQR----WWDGFGAQRN 64 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc-----CEEEEEeCCCCccHHHHHH-------HcCCEEEEC----CCCChHHHHH
Confidence 48999999999999999999998873 1689999999999988876 456776533 3444889999
Q ss_pred HHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEE
Q 011596 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGL 344 (482)
Q Consensus 302 ~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~ 344 (482)
.|+. .+.+|||+++|+|..++|++++++...+..+|..+.
T Consensus 65 ~~~~---~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~ 104 (229)
T cd02511 65 FALE---LATNDWVLSLDADERLTPELADEILALLATDDYDGY 104 (229)
T ss_pred HHHH---hCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEE
Confidence 9999 689999999999999999999999999987665333
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=1.5e-12 Score=119.32 Aligned_cols=106 Identities=23% Similarity=0.255 Sum_probs=86.7
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcccc
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGN 299 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~a 299 (482)
.|.+||+||+||+++.+.++|+|+++|+|++ .+|+|+||+|+|.+.+++++...+. ..+... ....++|+..+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~~~~~~----~~~~~~-~~~~~~g~~~~ 74 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIEYGAKD----VRVIRL-INERNGGLGAA 74 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHHHhhhc----ceEEEe-ecccCCChHHH
Confidence 5789999999999999999999999999987 6699999999999999888765532 223332 33345559999
Q ss_pred HHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHh
Q 011596 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHF 336 (482)
Q Consensus 300 ln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f 336 (482)
+|.++. .+.+|++.++|+|.. .++.+..+....
T Consensus 75 ~~~~~~---~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 75 RNAGLE---YARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhhHH---hccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999 577899999999999 888888855444
No 74
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.4e-11 Score=115.59 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=142.3
Q ss_pred CCCCCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHH-HHHHHHHHHHhhhCCCeEEEEeccCCCC
Q 011596 217 KGFFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTA-QTLIKEEVLKWQEAGANIVYRHRILRDG 294 (482)
Q Consensus 217 ~~~~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t-~~~~~~~~~~~~~~~v~vv~~~~~~~~g 294 (482)
..++|..||||+-+||+ ..+-+|+.|+++++-++--.|||+|||.|.|.. -..+. +++ .+++ .+...+.|
T Consensus 120 ~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~----ri~--kvr~--LRN~~ReG 191 (559)
T KOG3738|consen 120 KVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLK----RIP--KVRV--LRNNEREG 191 (559)
T ss_pred ecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHh----hhh--eeee--ecccchhh
Confidence 34789999999999998 899999999999885554558999999766543 22222 222 3443 33444455
Q ss_pred CccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCC-ChHHHHH----hhhhhh
Q 011596 295 YKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NLLTRLQ----DINLSF 369 (482)
Q Consensus 295 ~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~-~~~~~~~----~~~~~~ 369 (482)
-....+.|.+ .+++.++.|+|+.|.++.+||+-++...++|+. .+|+......|.+. +....-. .+.+..
T Consensus 192 -LirSRvrGAd---vA~a~vltFLDSHcEvN~~WLePLL~Rvaed~t-rvVsPiiDvIn~dnf~Y~~asadLrGGFDWsL 266 (559)
T KOG3738|consen 192 -LIRSRVRGAD---VAQATVLTFLDSHCEVNEGWLEPLLERVAEDTT-RVVSPIIDVINLDNFSYVGASADLRGGFDWSL 266 (559)
T ss_pred -hhhhhccccc---cccceEEEEEecceeecchhhHHHHHHHhhccc-ceeecccccccccccccccchhhhcCCcceEE
Confidence 5555566666 789999999999999999999999999997654 56666666666542 1111111 112222
Q ss_pred hhhhhh----hhccc-----cccccccccceEeeeHHHHHHcCCCCCC---CchhHHHHHHHHHHCCCcEEEecccee
Q 011596 370 HFEVEQ----QVNGV-----FINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHLRGWKFIFLNDVEC 435 (482)
Q Consensus 370 ~~~~~~----~~~~~-----~~~~~~~~G~~~~~Rr~~l~~iGgf~~~---~~~ED~~l~~rl~~~G~ki~~~~~~~~ 435 (482)
++...+ +-.+. -.....+.|.-+++.++.|.+.|.|+.. -.+|.++++.|+...|..+..+|-..+
T Consensus 267 hF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRV 344 (559)
T KOG3738|consen 267 HFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRV 344 (559)
T ss_pred EEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccch
Confidence 222211 11111 1123347899999999999999999776 346999999999999999999887663
No 75
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.14 E-value=8.4e-10 Score=110.02 Aligned_cols=181 Identities=19% Similarity=0.263 Sum_probs=116.4
Q ss_pred EEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc--CCCC------
Q 011596 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI--LRDG------ 294 (482)
Q Consensus 223 VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~--~~~g------ 294 (482)
+.|+|.+||.++.+++||+|+++|.......+|+|.+||+++.+.+.++.+. ..++++..... .+.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~~~~ 76 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVNPPHKFQ 76 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccCcccccc
Confidence 5799999999999999999999985223346789999999887776665431 23443321110 0111
Q ss_pred ---Cccc----cHHHHhhhcccCCceEEEEEcCCCCCChH---HHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHh
Q 011596 295 ---YKAG----NLKSAMNCSYVKDYEFVAIFDADFQPNPD---FLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQD 364 (482)
Q Consensus 295 ---~Ka~----aln~al~~~~~a~~d~Vl~lDaD~~~~pd---~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~ 364 (482)
+-+. ++|.++. ..++++++++|+|+.+.|| +++.+++.++.|+.+.+|++.-. |....... .
T Consensus 77 ~y~~ia~hyk~aln~vF~---~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd--nG~~~~~~---~ 148 (334)
T cd02514 77 GYYRIARHYKWALTQTFN---LFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND--NGKEHFVD---D 148 (334)
T ss_pred hhhHHHHHHHHHHHHHHH---hcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc--CCcccccC---C
Confidence 0122 6777776 4579999999999999999 55888888888999999998632 11000000 0
Q ss_pred hhhhhhhhhhhhhccccccccccccceEeeeHHHHHHcC-CCCCCCchhHHHHHHHH--HHCCCcEEEeccc
Q 011596 365 INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRA--HLRGWKFIFLNDV 433 (482)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG-gf~~~~~~ED~~l~~rl--~~~G~ki~~~~~~ 433 (482)
. .........+.|.+-+++|+++++.. .|.. -|+|.++|. .++|...+. |++
T Consensus 149 -------~-----~~~lyrs~ff~glGWml~r~~W~e~~~~wp~----~~WD~w~R~~~~rkgr~cir-Pei 203 (334)
T cd02514 149 -------T-----PSLLYRTDFFPGLGWMLTRKLWKELEPKWPK----AFWDDWMRLPEQRKGRECIR-PEI 203 (334)
T ss_pred -------C-----cceEEEecCCCchHHHHHHHHHHHhCCCCCC----CChHHhhcchhhhcCCcccc-CCc
Confidence 0 00111111256778888999998873 2322 488888885 556754443 443
No 76
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.11 E-value=7.6e-09 Score=97.94 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=124.7
Q ss_pred eEEEEeecCCchH----HHHHHHHHHHhCCC---CCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCC
Q 011596 222 MVLVQIPMCNEKE----VYQQSIAAVCNLDW---PKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG 294 (482)
Q Consensus 222 ~VsViIP~yne~~----~l~~tL~Sll~q~y---p~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g 294 (482)
-.|||||+|||+. .+..|++++.+ .| |+.+++|+|+||+|.|+|.+++-++..++....+++. ....|.|
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~-ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~--~l~~nrg 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEK-RYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVI--KLKKNRG 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHH-HhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEe--ehhccCC
Confidence 5899999999994 45555555543 33 4478999999999999999999888877666666655 2334555
Q ss_pred CccccHHHHhhhcccCCceEEEEEcCCC--CC-ChHHHHHHHHHhhc-CCCeEEEeeee-eeecCCCChHHH-HH-hhh-
Q 011596 295 YKAGNLKSAMNCSYVKDYEFVAIFDADF--QP-NPDFLRRTVPHFKD-NEELGLVQARW-SFVNKDENLLTR-LQ-DIN- 366 (482)
Q Consensus 295 ~Ka~aln~al~~~~~a~~d~Vl~lDaD~--~~-~pd~L~~lv~~f~~-~p~v~~V~~~~-~~~n~~~~~~~~-~~-~~~- 366 (482)
|+++...|+. .+.|++++|.|||- .+ +-..|++.+..... .++-+++.|.. ...|. +....+ +. ++-
T Consensus 145 -KGgAvR~g~l---~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~-~a~a~rs~~r~iLM 219 (323)
T KOG2977|consen 145 -KGGAVRKGML---SSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENT-EAVAKRSVIRNILM 219 (323)
T ss_pred -CCcceehhhH---hccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhcc-HHHHHHhHhhHHHH
Confidence 9999999988 58999999999995 33 45667777765552 23333444433 22231 111111 11 111
Q ss_pred hhhhhhhhhh-hccccccccccccceEeeeHHHHHHcCCCCCC-CchhHHHHHHHHHHCCCcEEEeccceecccCCcC
Q 011596 367 LSFHFEVEQQ-VNGVFINFFGFNGTAGVWRIKALEDSGGWMER-TTVEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (482)
Q Consensus 367 ~~~~~~~~~~-~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~-~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t 442 (482)
+.+|..+.-. ..+..... +| +.++.|.+.+.+=.+... ..+-|.++-..+...+-.+.-++- -++|.+.|
T Consensus 220 ~gFH~lv~~~a~rsI~DTQ---cg-fklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~v--~w~EIdgS 291 (323)
T KOG2977|consen 220 YGFHKLVWIFAIRSIRDTQ---CG-FKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIPV--EWTEIDGS 291 (323)
T ss_pred HHHHHHHHHHhcCcccccc---hh-HHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEeee--EEEEcCCc
Confidence 1222222111 11211111 12 356788888876332211 235688888888877777666543 34555544
No 77
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5.8e-11 Score=124.60 Aligned_cols=254 Identities=14% Similarity=0.183 Sum_probs=168.2
Q ss_pred CCCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHH-HHHHHHHHHHhhhCCCeEEEEeccCCCCCc
Q 011596 219 FFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTA-QTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (482)
Q Consensus 219 ~~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t-~~~~~~~~~~~~~~~v~vv~~~~~~~~g~K 296 (482)
.+|.+||||+-+||. .++.+++-|+.+.+-+.---||++|||+|+... .+.++++++.+.. +.+.+...+.| .
T Consensus 140 ~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~----v~i~r~~~R~G-L 214 (578)
T KOG3736|consen 140 KLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK----VRILRTKKREG-L 214 (578)
T ss_pred ccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc----eeEEeecchhh-h
Confidence 589999999999998 899999999999775544568999999877665 5556666665543 33444555666 8
Q ss_pred cccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHH-----HHhhhhhhhh
Q 011596 297 AGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTR-----LQDINLSFHF 371 (482)
Q Consensus 297 a~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~-----~~~~~~~~~~ 371 (482)
..|...|-+ .+.+|+++|+|+-+....+||+-++..+..+.. .+|+......+.+.--+.. ...+.+.+++
T Consensus 215 IrARl~GA~---~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~-tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f 290 (578)
T KOG3736|consen 215 IRARLLGAS---MATGEVLTFLDSHCEVNVGWLEPLLARIAEDRK-TVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTF 290 (578)
T ss_pred HHHHhhhhh---hhhchheeeeecceeEecCcchHHHHHhhhcCc-eeecceEEeecCcCceecccCccceeeeecceeE
Confidence 788888877 799999999999999999999999999987543 4444444333322100110 1111222222
Q ss_pred hh--------hh-hhccccccccccccceEeeeHHHHHHcCCCCCC---CchhHHHHHHHHHHCCCcEEEeccceecc--
Q 011596 372 EV--------EQ-QVNGVFINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHLRGWKFIFLNDVECQC-- 437 (482)
Q Consensus 372 ~~--------~~-~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~---~~~ED~~l~~rl~~~G~ki~~~~~~~~~~-- 437 (482)
.. .+ .....-....++.|..+++.|+.|.++|+|+++ -.+|-.++++|+.+-|-++..+|-..+-+
T Consensus 291 ~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHif 370 (578)
T KOG3736|consen 291 KWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIF 370 (578)
T ss_pred EeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceeeee
Confidence 20 11 111112234457999999999999999999987 33699999999999999999999877433
Q ss_pred --cCCcCHHH----HHHHHHh----hhhhhHHHHHHhChhhhh-------cCcchhhcccc
Q 011596 438 --ELPESYEA----YRKQQHR----WHSGPMQLFRLCLPDIIR-------AKVYILSNTSC 481 (482)
Q Consensus 438 --~~p~t~~~----~~~qr~R----W~~G~~q~~~~~~~~i~~-------s~~~~~~k~~~ 481 (482)
..|.++.+ ..+-..| |..-+-..+.++.|.... .+..+.+|++|
T Consensus 371 Rk~~pY~~p~~~~~~~~N~~RlAeVWmDeyK~~~y~~~P~~~~~d~GDvseR~~LR~~L~C 431 (578)
T KOG3736|consen 371 RKRKPYTFPDGTDTATRNLKRLAEVWMDEYKEQFYKRMPGLRNIDEGDLTERKALRERLNC 431 (578)
T ss_pred ecCCCccCCCcchhhhhchhhhhhhhhHHHHHHHHhhCccccccCCCCchhHHHHHHhcCC
Confidence 23555433 2222233 554444555555544433 23455555555
No 78
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.1e-10 Score=109.48 Aligned_cols=210 Identities=14% Similarity=0.096 Sum_probs=140.1
Q ss_pred CCCCCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCC-CHHHHHHHHHHHHHhhhCCCeEEEEeccCCCC
Q 011596 217 KGFFPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSD-DPTAQTLIKEEVLKWQEAGANIVYRHRILRDG 294 (482)
Q Consensus 217 ~~~~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdss-dd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g 294 (482)
+..+|.+||+|.-+||. ..+.+|+.|++..+-+..--+|+.+||-| .+...+-+.+++..|. | .+.+.+...+.|
T Consensus 151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fn--G-lVkV~Rne~REG 227 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFN--G-LVKVFRNERREG 227 (603)
T ss_pred cccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhc--C-EEEEEecchhhh
Confidence 44799999999999998 99999999999866444444677788754 4556777777777653 2 233333445555
Q ss_pred CccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEE------eeee-eeec--CCCChHHHHHhh
Q 011596 295 YKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLV------QARW-SFVN--KDENLLTRLQDI 365 (482)
Q Consensus 295 ~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V------~~~~-~~~n--~~~~~~~~~~~~ 365 (482)
-..+...|.+ .+.|++++|+||.|.+.-+||.-+++.+..|..+.-| -++. .+.. ..++-..+. .+
T Consensus 228 -LI~aRSiGA~---~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rG-if 302 (603)
T KOG3737|consen 228 -LIQARSIGAQ---KATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARG-IF 302 (603)
T ss_pred -hhhhhccchh---hccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcc-hh
Confidence 4455555555 5799999999999999999999999999876554322 2211 1111 111211110 01
Q ss_pred hhhhhh---------hhhhhhccccccccccccceEeeeHHHHHHcCCCCCCC---chhHHHHHHHHHHCCCcEEEeccc
Q 011596 366 NLSFHF---------EVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMERT---TVEDMDIAVRAHLRGWKFIFLNDV 433 (482)
Q Consensus 366 ~~~~~~---------~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~---~~ED~~l~~rl~~~G~ki~~~~~~ 433 (482)
++.+.+ ...+..++--....+..|..+++.|+.|.+.|.|++.. .+|.+++++.+.+.|-++.++|-.
T Consensus 303 eWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCS 382 (603)
T KOG3737|consen 303 EWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCS 382 (603)
T ss_pred hhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEcc
Confidence 111100 01111122222334468999999999999999999873 369999999999999999999976
Q ss_pred e
Q 011596 434 E 434 (482)
Q Consensus 434 ~ 434 (482)
.
T Consensus 383 r 383 (603)
T KOG3737|consen 383 R 383 (603)
T ss_pred c
Confidence 6
No 79
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.83 E-value=3.1e-08 Score=93.76 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=96.0
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
+|.++|.++.+++|++++.++..|+.. .+-+|+ ..+. .+.+.+.|.|++
T Consensus 3 iI~c~n~~~~~~~~~~~i~~~~~~~~~--~i~i~~----------------------------~~~~-~s~~~~yN~a~~ 51 (217)
T PF13712_consen 3 IIICVNDEELYEECLRSIKRLIGPPGE--LIEIDN----------------------------VRNA-KSMAAAYNEAME 51 (217)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT--TEE--EEEEE-----------------------------SSS--S-TTTHHHHHGG
T ss_pred EEEEECCHHHHHHHHHHHHhhCCCCce--EEEEec----------------------------cCCC-cCHHHHHHHHHH
Confidence 455667777888899999999887732 322332 1112 237788999999
Q ss_pred hcccCCceEEEEEcCCCCC-ChHHHHHHHHHhhcCCCeEEEe--eeeeeecCCCChHHHHH----hhhhh--hh-hhh--
Q 011596 306 CSYVKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEELGLVQ--ARWSFVNKDENLLTRLQ----DINLS--FH-FEV-- 373 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~~p~v~~V~--~~~~~~n~~~~~~~~~~----~~~~~--~~-~~~-- 373 (482)
.++++|++|++.|+.+ +++++..++..|+++|++|+++ |... ......++.... ...+. .+ ...
T Consensus 52 ---~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~-~~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~ 127 (217)
T PF13712_consen 52 ---KAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKR-LPPNGVWWESPNKVGKVREYGRIMHGHGPNS 127 (217)
T ss_dssp ---G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEES-S-S-TTS---EEEEEETTEEEE----E----
T ss_pred ---hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCc-CCCCCcccccccccccccccccccccccccc
Confidence 6899999999999966 7899999999997789987775 2221 122122221110 00000 00 000
Q ss_pred --hhhh----ccccccccccccceEeeeHHHHHHcCCCCCCCc----hhHHHHHHHHHHCCCcEEEeccceecccCCcCH
Q 011596 374 --EQQV----NGVFINFFGFNGTAGVWRIKALEDSGGWMERTT----VEDMDIAVRAHLRGWKFIFLNDVECQCELPESY 443 (482)
Q Consensus 374 --~~~~----~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~----~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t~ 443 (482)
.... ......+-.+-|..++.+++++ +|++... .-|.++++++.++|+++ ++++..+.|....++
T Consensus 128 ~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v-~~~~~~~~H~s~g~~ 202 (217)
T PF13712_consen 128 AGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRV-VVPPPWCIHFSGGSF 202 (217)
T ss_dssp ---------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EE-EE-----EE-S----
T ss_pred cccccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEE-EecCceEEEcCCCCc
Confidence 0000 1123345567999999999999 7777622 37999999999999988 667777777766654
Q ss_pred H
Q 011596 444 E 444 (482)
Q Consensus 444 ~ 444 (482)
.
T Consensus 203 ~ 203 (217)
T PF13712_consen 203 D 203 (217)
T ss_dssp S
T ss_pred c
Confidence 3
No 80
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.12 E-value=2.6e-05 Score=73.09 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=107.8
Q ss_pred eEEEEeecCCchHHHHHHHHHHH----hCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcc
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVC----NLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll----~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka 297 (482)
+|+||||-+|.++.|...+..+. +|. -++.|+|++...+... .|+
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~---~~~~i~vi~Q~~~~~F----------------------------NR~ 51 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQ---LDYRIFVIEQVGNFRF----------------------------NRA 51 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEEecCCccc----------------------------hhh
Confidence 68999999999988877776543 232 2345666653222110 144
Q ss_pred ccHHHHhhhcc-cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhh
Q 011596 298 GNLKSAMNCSY-VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQ 376 (482)
Q Consensus 298 ~aln~al~~~~-~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 376 (482)
..+|.|+..+. ..+.|++++-|-|..|..+.+..- +.+.|.-..+.-. . ..+. .
T Consensus 52 ~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y~---~~~~p~H~s~~~~--------~-------~~~~--l----- 106 (219)
T cd00899 52 KLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYG---CEEGPRHLSVPLD--------K-------FHYK--L----- 106 (219)
T ss_pred hhhhHHHHHHhhcCCccEEEEecccccccCcccccc---CCCCCeEEEEeec--------c-------cccc--c-----
Confidence 55666665431 234799999999999988875422 2222321111100 0 0000 0
Q ss_pred hccccccccccccceEeeeHHHHHHcCCCCCCCc---hhHHHHHHHHHHCCCcEEEecccee-----cc-cCC---cC--
Q 011596 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLNDVEC-----QC-ELP---ES-- 442 (482)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~~~---~ED~~l~~rl~~~G~ki~~~~~~~~-----~~-~~p---~t-- 442 (482)
...++.|++++++++.+.+++||++... .||.|+..|+..+|.++...+.... ++ +.+ .+
T Consensus 107 ------py~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~~~~r~~~N~~ 180 (219)
T cd00899 107 ------PYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDNPN 180 (219)
T ss_pred ------CcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccceeeeecCCCcccccCHH
Confidence 1112578899999999999999998633 5999999999999999888765543 22 111 11
Q ss_pred -HHHHHHHHHhhhhhhHHH
Q 011596 443 -YEAYRKQQHRWHSGPMQL 460 (482)
Q Consensus 443 -~~~~~~qr~RW~~G~~q~ 460 (482)
+.....++.||+...+..
T Consensus 181 r~~~l~~~~~~~~~dGLns 199 (219)
T cd00899 181 RFALLQNSRERDHSDGLNS 199 (219)
T ss_pred HHHHHHhhCeEeccCCccc
Confidence 334455666776555443
No 81
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.99 E-value=0.00011 Score=75.34 Aligned_cols=210 Identities=18% Similarity=0.211 Sum_probs=104.0
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEec--c--CCCC
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHR--I--LRDG 294 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~--~--~~~g 294 (482)
..+.+-|+|-+||.++.+++||+++++..-..+++.|+|..||++..+.+.++.+. ..+..+.... + ...+
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~-----~~v~~i~~~~~~~i~~~~~ 165 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYG-----DQVTYIQHPDFSPITIPPK 165 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGG-----GGSEEEE-S--S-----TT
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhh-----hhheeeecCCcCCceeCcc
Confidence 46678999999999999999999999855223467789999999998877766431 1233221100 0 0011
Q ss_pred C-c-------cccHHHHhhhcc-cCCceEEEEEcCCCCCChHHHH---HHHHHhhcCCCeEEEeeeeeeecCCCChHHHH
Q 011596 295 Y-K-------AGNLKSAMNCSY-VKDYEFVAIFDADFQPNPDFLR---RTVPHFKDNEELGLVQARWSFVNKDENLLTRL 362 (482)
Q Consensus 295 ~-K-------a~aln~al~~~~-~a~~d~Vl~lDaD~~~~pd~L~---~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~ 362 (482)
. | +.....|+.... .-+++.++++.+|..+.||+++ .+.+.+++||.+-+|++--. |.......
T Consensus 166 ~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNd--nG~~~~~~-- 241 (434)
T PF03071_consen 166 EKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWND--NGKEHFVD-- 241 (434)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--T--T-BGGGS---
T ss_pred cccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcccc--CCcccccc--
Confidence 0 1 111222333221 3468899999999999998875 45666677899998887421 11001000
Q ss_pred HhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHcC-CCCCCCchhHHHHHHHHHHCCCcEEEeccce---eccc
Q 011596 363 QDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-GWMERTTVEDMDIAVRAHLRGWKFIFLNDVE---CQCE 438 (482)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG-gf~~~~~~ED~~l~~rl~~~G~ki~~~~~~~---~~~~ 438 (482)
. .........-.++|-+-|++|+.++++. .|+. .. -|..+-....++|...++ |++- ..+.
T Consensus 242 -~-----------~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~-~~-WDdwmR~~~~rkgR~cIr-PeisRt~~fg~ 306 (434)
T PF03071_consen 242 -D-----------SRPSLLYRSDFFPGLGWMLTRELWDELEPKWPK-AF-WDDWMRQPEQRKGRQCIR-PEISRTYHFGK 306 (434)
T ss_dssp -T-----------T-TT-EEEESS---SSEEEEHHHHHHHGGG--S-S--HHHHHTSHHHHTT-EEEE-ESSBSEEE--S
T ss_pred -C-----------CCccceEecccCCchHHHhhHHHHHhhcccCCC-CC-chhhhcCccccCCCceee-ccCCCccccCc
Confidence 0 0000111111267888999999999975 4543 23 333344456778866655 4433 4445
Q ss_pred CCcCHHHHHHHHHh
Q 011596 439 LPESYEAYRKQQHR 452 (482)
Q Consensus 439 ~p~t~~~~~~qr~R 452 (482)
...+...++.+..+
T Consensus 307 ~G~s~g~~f~~~l~ 320 (434)
T PF03071_consen 307 KGVSNGQFFDKYLK 320 (434)
T ss_dssp SSSS-THHHHHTGG
T ss_pred CCcchHHHHHHHHh
Confidence 55565666655433
No 82
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.0029 Score=60.00 Aligned_cols=196 Identities=12% Similarity=0.100 Sum_probs=102.4
Q ss_pred CeEEEEeecCCch--H-HHHHHHH--HHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCC
Q 011596 221 PMVLVQIPMCNEK--E-VYQQSIA--AVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (482)
Q Consensus 221 P~VsViIP~yne~--~-~l~~tL~--Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~ 295 (482)
|..+++||+--.+ . .-.+.+. ++++---+.+-..|+++++++-.. ..++.+. ++..++.|..--.....
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d--~~i~~~i----~~~~~~~yl~~~s~~~F 75 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD--RLIRSYI----DPMPRVLYLDFGSPEPF 75 (346)
T ss_pred CCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH--HHHHHHh----ccccceEEEecCCCccc
Confidence 5678888886554 1 2222233 223322345567888888866332 2333333 44556566533222110
Q ss_pred --ccccHHHHhhhc-ccCCceEEEEEcCCCCCChHHHHHHHHHhhc---CCCe-EEEeeeeeeecCCCChHH-HHHhhhh
Q 011596 296 --KAGNLKSAMNCS-YVKDYEFVAIFDADFQPNPDFLRRTVPHFKD---NEEL-GLVQARWSFVNKDENLLT-RLQDINL 367 (482)
Q Consensus 296 --Ka~aln~al~~~-~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~---~p~v-~~V~~~~~~~n~~~~~~~-~~~~~~~ 367 (482)
-+..-|.|...+ ...+.++|+|+|.||....|-..++++...- ..++ ....-++.+.|+..+-.- ....+.+
T Consensus 76 ~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~ 155 (346)
T COG4092 76 ASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFL 155 (346)
T ss_pred cchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhh
Confidence 112223333321 1345899999999999997666666633221 1233 233345556665443111 1111111
Q ss_pred --hhhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCCC---CchhHHHHHHHHHH
Q 011596 368 --SFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHL 422 (482)
Q Consensus 368 --~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~---~~~ED~~l~~rl~~ 422 (482)
..........+....-+........++.+..+-..||++|. +.+||+++..|+..
T Consensus 156 d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l 215 (346)
T COG4092 156 DAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGL 215 (346)
T ss_pred hhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHH
Confidence 11111112222222122234556678999999999999987 55799999999876
No 83
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.50 E-value=0.0003 Score=57.45 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=56.3
Q ss_pred CCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCC-CccccHHHHhhhcc
Q 011596 230 CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG-YKAGNLKSAMNCSY 308 (482)
Q Consensus 230 yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g-~Ka~aln~al~~~~ 308 (482)
+||+..|.+.|...+++.+.. ++|+||+|+|.+.+++++. .++.++....+.... .....++...+.
T Consensus 1 rne~~~L~~wl~~~~~lG~d~----i~i~d~~s~D~t~~~l~~~------~~v~i~~~~~~~~~~~~~~~~~~~~~~~-- 68 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVDH----IYIYDDGSTDGTREILRAL------PGVGIIRWVDPYRDERRQRAWRNALIER-- 68 (97)
T ss_pred CChHHHHHHHHHHHHHcCCCE----EEEEECCCCccHHHHHHhC------CCcEEEEeCCCccchHHHHHHHHHHHHh--
Confidence 689999999999998887643 7789999999998887643 346666443322221 112222333332
Q ss_pred cCCceEEEEEcCCCCCC
Q 011596 309 VKDYEFVAIFDADFQPN 325 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~ 325 (482)
..++||++++|+|-.+.
T Consensus 69 ~~~~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 69 AFDADWVLFLDADEFLV 85 (97)
T ss_pred CCCCCEEEEEeeeEEEe
Confidence 35789999999997653
No 84
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.40 E-value=0.0015 Score=63.08 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=76.7
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEE-EEEcCCC-CHHHHHHHHHHHHHhhh--------CCCeEEEEe
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILI-QVLDDSD-DPTAQTLIKEEVLKWQE--------AGANIVYRH 288 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~I-iVvDdss-dd~t~~~~~~~~~~~~~--------~~v~vv~~~ 288 (482)
.-++|-|+.|..|.+..+..-++.+.+++||.+.+.+ +++.|++ -+.+.+.+++...+... ..+.++ .
T Consensus 23 ~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl--~ 100 (269)
T PF03452_consen 23 NKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITIL--R 100 (269)
T ss_pred cCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEE--c
Confidence 5689999999999999999999999999999988877 4455544 26666666655544321 122222 1
Q ss_pred ccC----------CCC---------CccccHHHHhhhcccCCceEEEEEcCCCCC-ChHHHHHHHHH
Q 011596 289 RIL----------RDG---------YKAGNLKSAMNCSYVKDYEFVAIFDADFQP-NPDFLRRTVPH 335 (482)
Q Consensus 289 ~~~----------~~g---------~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~ 335 (482)
.+. ++. .-+.+.|+.+..+.....+||+.+|+|.+- +|+.++.++.+
T Consensus 101 ~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~ 167 (269)
T PF03452_consen 101 KDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH 167 (269)
T ss_pred CCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhC
Confidence 211 111 112345555554445578999999999865 67777777653
No 85
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.24 E-value=0.0014 Score=64.80 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=60.4
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC---HHHHHHHHHHHHHhhhCCCeEEEEeccC-----
Q 011596 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQTLIKEEVLKWQEAGANIVYRHRIL----- 291 (482)
Q Consensus 221 P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssd---d~t~~~~~~~~~~~~~~~v~vv~~~~~~----- 291 (482)
-..+||||+.||+ ..++-.|. ..|.+. .||||.||+. |......+...+.+...+-.++.+|..+
T Consensus 50 ~~maIVVP~KnE~l~lleGVL~-----gIPh~C-~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~ 123 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKLLEGVLS-----GIPHDC-LIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAE 123 (381)
T ss_dssp TTEEEEEEESS--HHHHHHHHH-----CS-TTS-EEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHH
T ss_pred hCcEEEEECCCCchhhhhhhhh-----cCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHH
Confidence 4589999999998 55554444 346644 4778888776 4443322222111112222333333321
Q ss_pred -----------------CCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHH---HHHHHHHhhc-CCCeEEEeeeee
Q 011596 292 -----------------RDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDF---LRRTVPHFKD-NEELGLVQARWS 350 (482)
Q Consensus 292 -----------------~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~---L~~lv~~f~~-~p~v~~V~~~~~ 350 (482)
++ ||+.+|-.|+-.+.....+||.|+|||...+-.. ++...+-|.. .....+|--.+.
T Consensus 124 Af~~aGy~~il~~~g~VR~-GKgEGMiiGillAk~~g~~YVGFvDADNyiPGaV~EYvk~yAAGf~ms~spytMVRi~W~ 202 (381)
T PF09488_consen 124 AFKEAGYPEILDEDGLVRN-GKGEGMIIGILLAKAPGKRYVGFVDADNYIPGAVNEYVKDYAAGFAMSESPYTMVRIHWR 202 (381)
T ss_dssp HHHHTT--TTB-TTSSB-S-SHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHHHHHHHHHHHHHHHC-SSSCEEEEEE--
T ss_pred HHHHcCcHHHhCCCCceec-CchHHHHHHHHHHHhcCCceEeEeeccCCCcchHHHHHHHHHhhhcccCCCceEEEEEec
Confidence 33 4888888887755457789999999999876432 3333333332 234456655554
Q ss_pred ee
Q 011596 351 FV 352 (482)
Q Consensus 351 ~~ 352 (482)
+.
T Consensus 203 ~K 204 (381)
T PF09488_consen 203 SK 204 (381)
T ss_dssp --
T ss_pred CC
Confidence 43
No 86
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.10 E-value=0.0049 Score=60.70 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=59.5
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC---HHHHH---HHHHHHHHhhhCCCeEEEEecc--
Q 011596 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQT---LIKEEVLKWQEAGANIVYRHRI-- 290 (482)
Q Consensus 220 ~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssd---d~t~~---~~~~~~~~~~~~~v~vv~~~~~-- 290 (482)
.-...|+||+.||. ..++-.|. ..|.+. .||||.||+. |.... +++.+. .+.+..+-+++...+
T Consensus 49 ~~~maIVVP~KdE~l~lleGVL~-----gIPh~c-~iIvVSNS~r~~~d~f~~E~d~~~~f~-~~t~r~~i~vHQkDp~l 121 (381)
T TIGR02460 49 LGKTAIVVPVKNEKLHLLEGVLS-----GIPHEC-PIIIVSNSKREPPDRFKMEVDLIRHFS-NLTHRKIIIIHQKDPAL 121 (381)
T ss_pred HhCcEEEEEcCCCchhHHhhHhh-----cCCCCC-eEEEEeCCCCCChhHHHHHHHHHHHHH-HhhcCceEEEEcCCHHH
Confidence 34689999999998 55544443 346644 4778888765 33322 222221 111222322222111
Q ss_pred ------------------CCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChH
Q 011596 291 ------------------LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPD 327 (482)
Q Consensus 291 ------------------~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd 327 (482)
-++ ||+.+|-.|+-.+.....+||.|+|||..+|-.
T Consensus 122 a~Af~~~gy~~il~~~g~VR~-GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa 175 (381)
T TIGR02460 122 AEAFKEVGYTSILGENGRVRS-GKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA 175 (381)
T ss_pred HHHHHHcCchhhhCCCCceec-CcchHHHHHHHHHHHhCCceEeEeecccCCCch
Confidence 133 499988888765445678999999999988653
No 87
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.09 E-value=0.0048 Score=61.14 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=59.4
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC---HHHHHHHHHHH--HHhhhCCCeEEEEecc---
Q 011596 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQTLIKEEV--LKWQEAGANIVYRHRI--- 290 (482)
Q Consensus 220 ~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssd---d~t~~~~~~~~--~~~~~~~v~vv~~~~~--- 290 (482)
.-...|+||+.||. ..++-.|. ..|.+. .||||.||+. |......+... ..+.+..+-+++...+
T Consensus 50 ~~~mAIVVP~KdE~l~lleGVL~-----gIPh~c-~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la 123 (393)
T PRK14503 50 LGRMAIVVPVKNERLKLLEGVLK-----GIPHEC-PIIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLA 123 (393)
T ss_pred HhCcEEEEEcCCCchhHHhhHhh-----cCCCCC-eEEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHH
Confidence 34689999999998 55544443 346644 4778888754 33322221111 1112222322322221
Q ss_pred -----------------CCCCCccccHHHHhhhcccCCceEEEEEcCCCCCCh
Q 011596 291 -----------------LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP 326 (482)
Q Consensus 291 -----------------~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~p 326 (482)
-++ ||+.+|-.|+-.+.....+||.|+|||..+|-
T Consensus 124 ~Af~~aGyp~il~~~g~VR~-GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG 175 (393)
T PRK14503 124 EALKEAGYPYILDENGLVRS-GKGEGMIIGLLLAKALGARYVGFVDADNYIPG 175 (393)
T ss_pred HHHHHcCChhhhCCCCceec-CcchHHHHHHHHHHHhCCCeEeEeecccCCCc
Confidence 134 49999888876544567899999999998865
No 88
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=96.77 E-value=0.032 Score=55.42 Aligned_cols=202 Identities=13% Similarity=0.160 Sum_probs=110.5
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLD-DSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvD-dssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka 297 (482)
+.|.+.+++|...+.....+...+++... ++++.++|+- +.|.++-.. ++....+...-+++... .....=..+
T Consensus 227 ~~pgih~i~pl~gr~~~f~rf~q~~c~~~--d~~l~l~vv~f~~se~e~ak--~e~~tslra~f~~~q~l-~lngeFSRa 301 (494)
T KOG3588|consen 227 EDPGIHMIMPLRGRAAIFARFAQSICARG--DDRLALSVVYFGYSEDEMAK--RETITSLRASFIPVQFL-GLNGEFSRA 301 (494)
T ss_pred cCCCceEEEeccchHHHhhhhhHHHhccC--CCceEEEEEEecCCChHHHh--hhHHHHHhhcCCceEEe-cccchhhhh
Confidence 57889999999999999999988888643 4445544433 334333222 12222222222333322 111111345
Q ss_pred ccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCC-ChHHHHHhhhhhhhhhhhhh
Q 011596 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDE-NLLTRLQDINLSFHFEVEQQ 376 (482)
Q Consensus 298 ~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~ 376 (482)
-++..|-+. ....-.+.|.|-|.....++|.++-..-. |+-.+ ..+..+...+. .+...-.... ..++.....
T Consensus 302 ~aL~vGAe~--~~~nvLLFfcDVDi~FT~efL~rcr~Nt~--~gkqi-yfPivFS~ynp~ivy~~~~~~p-~e~~~~~~~ 375 (494)
T KOG3588|consen 302 KALMVGAET--LNANVLLFFCDVDIYFTTEFLNRCRLNTI--LGKQI-YFPIVFSQYNPEIVYEQDKPLP-AEQQLVIKK 375 (494)
T ss_pred HHHHhhHHH--hccceeEEEeccceeehHHHHHHHhhccC--CCceE-EEEEEEeecCcceeecCCCCCc-hhHheeecc
Confidence 566666664 22445677789999999999998876554 33221 22222221111 1111000000 111111111
Q ss_pred hccccccccccccceEeeeHHHHHHcCCCCCC---CchhHHHHHHHHHHCCCcEEEeccce
Q 011596 377 VNGVFINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHLRGWKFIFLNDVE 434 (482)
Q Consensus 377 ~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~---~~~ED~~l~~rl~~~G~ki~~~~~~~ 434 (482)
-.+.+.+ +| -|-.+.+|-+. -++|||+.. -..||.++.......|.+++-.|++-
T Consensus 376 ~tGfwRd-fG-fGmtc~yrsd~-~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pG 433 (494)
T KOG3588|consen 376 DTGFWRD-FG-FGMTCQYRSDF-LTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPG 433 (494)
T ss_pred ccccccc-cC-CceeEEeeccc-eeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCc
Confidence 1222222 22 25556666554 567999865 34699999999999999999888876
No 89
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=96.68 E-value=0.066 Score=57.15 Aligned_cols=203 Identities=14% Similarity=0.153 Sum_probs=111.6
Q ss_pred CCeEEEEeecCCc-hHHHHHHHHHHHhCC-CCCCceE-EEEEcCC-CC-H---HHHHHHHHHHHHhhhCCCeEEEEeccC
Q 011596 220 FPMVLVQIPMCNE-KEVYQQSIAAVCNLD-WPKSKIL-IQVLDDS-DD-P---TAQTLIKEEVLKWQEAGANIVYRHRIL 291 (482)
Q Consensus 220 ~P~VsViIP~yne-~~~l~~tL~Sll~q~-yp~~~~~-IiVvDds-sd-d---~t~~~~~~~~~~~~~~~v~vv~~~~~~ 291 (482)
-..|.||||..+. .+.+.+-++...+.- -++++.. ++|...+ .+ + .+.+.++++..+++...+.++-.. .
T Consensus 246 ~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~--~ 323 (499)
T PF05679_consen 246 STRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK--T 323 (499)
T ss_pred CCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec--C
Confidence 4689999999999 666666555544310 0122222 3333322 11 2 233466667777765566665432 1
Q ss_pred CCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChH-HHHHhhhhhhh
Q 011596 292 RDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLL-TRLQDINLSFH 370 (482)
Q Consensus 292 ~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~-~~~~~~~~~~~ 370 (482)
+.-.++.++..|++. ....++++++|-|..+++++|.++-..-..+- -|..+..+..-+.... .......- .
T Consensus 324 ~~fsr~~~Ld~g~~~--~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~---qvy~PI~Fs~y~p~~~~~~~~~~~~--~ 396 (499)
T PF05679_consen 324 GEFSRGAALDVGAKK--FPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGK---QVYFPIVFSQYNPDIVYAGKPPEPD--Q 396 (499)
T ss_pred CCccHHHHHHhhccc--CCCCcEEEEEeCCcccCHHHHHHHHHhhhcCc---EEEEeeeccccCCcccccCCCCccc--c
Confidence 333477788888874 45678999999999999999999887665321 2333333321111110 00000000 0
Q ss_pred hhhhhhhccccccccccccceEeeeHHHHHHc-CCCCCC---CchhHHHHHHHHHHCC--CcEEEeccce
Q 011596 371 FEVEQQVNGVFINFFGFNGTAGVWRIKALEDS-GGWMER---TTVEDMDIAVRAHLRG--WKFIFLNDVE 434 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i-Ggf~~~---~~~ED~~l~~rl~~~G--~ki~~~~~~~ 434 (482)
... ....|.+ ...+ -|..++++.+....- ||++.. ...||.++.-+..+.| ..+.=.+++.
T Consensus 397 ~~i-~~~~G~w-~~~g-fg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep~ 463 (499)
T PF05679_consen 397 FDI-SKDTGFW-RRFG-FGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEPG 463 (499)
T ss_pred Ccc-CCCCCcc-ccCC-CceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCCC
Confidence 000 1111111 1111 255566666554442 566543 4579999999999999 6676666665
No 90
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.61 E-value=0.015 Score=55.55 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=64.9
Q ss_pred HHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCceEEEE
Q 011596 238 QSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAI 317 (482)
Q Consensus 238 ~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~ 317 (482)
-|+.|+.+|+-|++++ +++.|+...+...+-++++.+.++ .+++++. ..+....++..+++.......++++.
T Consensus 46 ~~LpSl~~QTd~dF~~-lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (234)
T PF11316_consen 46 YCLPSLRAQTDQDFTW-LVLFDDDLPEPYRERLRDLLADYP--QFRIVFR----PPGPHRDAMRRAINAARRDGADPVLQ 118 (234)
T ss_pred HHhhHHHhccCCCeEE-EEEECCCCCHHHHHHHHHHhccCC--CcEEEec----CCchHHHHHHHHHhhhccCCCCEEEE
Confidence 4899999999998776 446777777777777777766544 3455533 22324556666664322355665555
Q ss_pred --EcCCCCCChHHHHHHHHHhh
Q 011596 318 --FDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 318 --lDaD~~~~pd~L~~lv~~f~ 337 (482)
+|+|+.+..|+++++-....
T Consensus 119 ~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 119 FRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred EEECCcchhhHHHHHHHHHHHH
Confidence 59999999999999999884
No 91
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.53 E-value=0.0039 Score=48.87 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=34.7
Q ss_pred cccceEeeeHHHHHHcCCCCCCCc---hhHHHHHHHHHHCCCcEEEeccce
Q 011596 387 FNGTAGVWRIKALEDSGGWMERTT---VEDMDIAVRAHLRGWKFIFLNDVE 434 (482)
Q Consensus 387 ~~G~~~~~Rr~~l~~iGgf~~~~~---~ED~~l~~rl~~~G~ki~~~~~~~ 434 (482)
+.|.+++++++.+.++|||++... .||.|+..|+..+|.++...+...
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~ 69 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSI 69 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTT
T ss_pred eeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCce
Confidence 679999999999999999998744 499999999999999887766544
No 92
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.33 E-value=0.03 Score=60.91 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=60.4
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC---HHHHH---HHHHHHHHhhhCCCeEEEEecc--
Q 011596 220 FPMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDD---PTAQT---LIKEEVLKWQEAGANIVYRHRI-- 290 (482)
Q Consensus 220 ~P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssd---d~t~~---~~~~~~~~~~~~~v~vv~~~~~-- 290 (482)
.....||||+.||. ..++-.|. ..|.+. .||||.||+. |.... +++.+. .+.+..+-+++...+
T Consensus 54 ~~~~aivvp~k~e~~~~~~gvl~-----~ip~~c-~ii~vsns~r~~~d~~~~e~~~~~~~~-~~~~~~~~~vhq~dp~~ 126 (694)
T PRK14502 54 EKKMAIVLPIKDEDLKVFEGVLS-----GIPHDC-LMIVISNSSKQEVDNFKNEKDIVNRFC-RITHRQAIVVHQKNPEL 126 (694)
T ss_pred HhCcEEEEEcCCCchhHHhhHhh-----cCCCCC-eEEEEeCCCCCchHHHHHHHHHHHHHH-HhhcCceEEEEcCCHHH
Confidence 34689999999998 55554443 346654 4778888764 33222 222221 111222322322211
Q ss_pred ------------------CCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHH
Q 011596 291 ------------------LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDF 328 (482)
Q Consensus 291 ------------------~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~ 328 (482)
-++ ||+.+|-.|+-.+.....+||.|+|||..+|-..
T Consensus 127 a~a~~~~g~~~~~~~~~~vr~-gk~egm~~g~~la~~~g~~yvgfidadny~pg~v 181 (694)
T PRK14502 127 ANAIADAGYPELLGEDGLIRS-GKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAV 181 (694)
T ss_pred HHHHHHcCChhhhCCCCceec-CcchHHHHHHHHHHhcCCceEeEeeccCCCCchH
Confidence 134 4999988887755456789999999999887543
No 93
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=96.17 E-value=0.17 Score=48.49 Aligned_cols=199 Identities=9% Similarity=0.024 Sum_probs=108.1
Q ss_pred EEEEeecCCchHHHHHHHH-HHHh--CCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCC-----
Q 011596 223 VLVQIPMCNEKEVYQQSIA-AVCN--LDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG----- 294 (482)
Q Consensus 223 VsViIP~yne~~~l~~tL~-Sll~--q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g----- 294 (482)
|-|-.-.||.++.+..... ++++ +...++++-|.|++++|.|.|.++++++.......+++..+........
T Consensus 2 ~fIA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~ 81 (241)
T PF11735_consen 2 YFIAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIER 81 (241)
T ss_pred EEEEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccc
Confidence 4455567888877765555 4443 1233457888899999999999999988877767788766554222111
Q ss_pred --------CccccHHHHhhhcc------cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeee-----e----
Q 011596 295 --------YKAGNLKSAMNCSY------VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWS-----F---- 351 (482)
Q Consensus 295 --------~Ka~aln~al~~~~------~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~-----~---- 351 (482)
+-+.-.|.|++=.+ ....|.|+|++ |....+.-+.+++..-.. .+.+++++--. +
T Consensus 82 ~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~-~~~~~aCamDf~~~~~fYD~w 159 (241)
T PF11735_consen 82 PPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNR-GNYDMACAMDFINPPKFYDTW 159 (241)
T ss_pred cchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCc-ccccchhhcccccCcccccee
Confidence 11234566665322 34467899999 888877666666655431 34444444211 1
Q ss_pred --ecCCCChHHHHHhhhhh-hhhhhhhhhccccccccccccceEeeeHHHHHHcC--CCCC-----CCchhHHHHHHHHH
Q 011596 352 --VNKDENLLTRLQDINLS-FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG--GWME-----RTTVEDMDIAVRAH 421 (482)
Q Consensus 352 --~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG--gf~~-----~~~~ED~~l~~rl~ 421 (482)
+..+++.+. .+...+. ..........+....+..+.|...++..+.+...+ .|.. ...+|-..++.-++
T Consensus 160 v~RD~~G~~~~-~~~~p~f~~~~~~~~~~~~~pv~V~SCWnG~va~~a~pf~~~~~lrFR~~~~~~~~~sEc~Li~~D~~ 238 (241)
T PF11735_consen 160 VLRDIEGDSFG-SPFWPYFRSASSRDRLRRGDPVPVFSCWNGMVAFDAEPFLPPTPLRFRADSEGECEASECCLIHADLW 238 (241)
T ss_pred EEecCCCCccc-cccCcCcCCHHHHHHHhcCCCeeeecccCCcccccchhhccCCceeecCCCCCceeccchhHhHhhhh
Confidence 011111110 0000000 00111112223333556677888888888888754 3322 13345555555555
Q ss_pred HCC
Q 011596 422 LRG 424 (482)
Q Consensus 422 ~~G 424 (482)
..|
T Consensus 239 ~~g 241 (241)
T PF11735_consen 239 RWG 241 (241)
T ss_pred hcC
Confidence 544
No 94
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=95.14 E-value=0.15 Score=51.66 Aligned_cols=210 Identities=9% Similarity=0.057 Sum_probs=110.4
Q ss_pred EEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCC--CHHHH--------------------HHHHH-H------
Q 011596 223 VLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSD--DPTAQ--------------------TLIKE-E------ 273 (482)
Q Consensus 223 VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdss--dd~t~--------------------~~~~~-~------ 273 (482)
|-|.|++|-..+ ...||.++.++.-.++++.|-|++-.. ++... ..... .
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWPD 80 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccccc
Confidence 678899999875 888888888755444688888887622 11110 01110 0
Q ss_pred -HHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcC-CCeEEEeeeeee
Q 011596 274 -VLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDN-EELGLVQARWSF 351 (482)
Q Consensus 274 -~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~-p~v~~V~~~~~~ 351 (482)
........|+++.++...-.| -.-|...+.+. -.+-+|++.+|+.+...++|=..++..++.- ..-.++++....
T Consensus 81 ~~~~~~~~~Ir~~~~~~~~a~G-p~~AR~la~~l--~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~ 157 (343)
T PF11397_consen 81 GALCLRSDQIRVIRVDASEARG-PCWARYLAQKL--YRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPG 157 (343)
T ss_pred ccccccCCeEEEEEeCHHHCcC-hHHHHHHHHHH--hCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCC
Confidence 000012344544443333333 33344444432 3567899999999999999988888777652 233455544333
Q ss_pred ecC-CC------ChHHHHHhhhhhhh--hhhh-hhhcc--c-ccc-ccc-cccceEeeeHHHHHHcCCCCCCC----chh
Q 011596 352 VNK-DE------NLLTRLQDINLSFH--FEVE-QQVNG--V-FIN-FFG-FNGTAGVWRIKALEDSGGWMERT----TVE 412 (482)
Q Consensus 352 ~n~-~~------~~~~~~~~~~~~~~--~~~~-~~~~~--~-~~~-~~~-~~G~~~~~Rr~~l~~iGgf~~~~----~~E 412 (482)
.+. +. +....+....+... .... ..... . ... ... +.+..++-+-++++++ .|++.. .+|
T Consensus 158 ~~~~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~GE 236 (343)
T PF11397_consen 158 YEPDGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFDGE 236 (343)
T ss_pred cccccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccccH
Confidence 222 10 11111111111000 0000 00000 0 000 112 3444455555666665 566653 479
Q ss_pred HHHHHHHHHHCCCcEEEeccceecc
Q 011596 413 DMDIAVRAHLRGWKFIFLNDVECQC 437 (482)
Q Consensus 413 D~~l~~rl~~~G~ki~~~~~~~~~~ 437 (482)
.+.++.|+..+||.+.--+...+++
T Consensus 237 E~~~aaRlwT~GYD~Y~P~~~v~~H 261 (343)
T PF11397_consen 237 EISMAARLWTHGYDFYSPTRNVLFH 261 (343)
T ss_pred HHHHHHHHHHcCCccccCCCceeEE
Confidence 9999999999999986655555444
No 95
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=94.66 E-value=0.93 Score=42.99 Aligned_cols=157 Identities=19% Similarity=0.133 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccC----CCCCccccHHHHhhh
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL----RDGYKAGNLKSAMNC 306 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~----~~g~Ka~aln~al~~ 306 (482)
+....+..+++.+++...-+ + |+|.-| ++...+.++ ..+..+.+. |+. ..-+....+..|++.
T Consensus 22 ~GkpLi~~ti~~a~~s~~~d-~--IvVstd--~~~i~~~a~-------~~g~~v~~~-r~~~l~~d~~~~~~si~~~l~~ 88 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLFD-K--VVVSTD--DEEIAEVAK-------SYGASVPFL-RPKELADDFTGTAPVVKHAIEE 88 (222)
T ss_pred CCcCHHHHHHHHHHhCCCCC-E--EEEeCC--CHHHHHHHH-------HcCCEeEEe-ChHHHcCCCCCchHHHHHHHHH
Confidence 44568899999998876533 2 334332 333333333 345665442 222 111355667778764
Q ss_pred ccc-CCceEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeeeeeee-cCCCCh-H---HHHHhhhhhhhhhhhhhhcc
Q 011596 307 SYV-KDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFV-NKDENL-L---TRLQDINLSFHFEVEQQVNG 379 (482)
Q Consensus 307 ~~~-a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~-n~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 379 (482)
... .+.|+|+++++|. ...++.+.+++..+.+ .+.+.+.+..... +...++ . ..+..+... . .....+.
T Consensus 89 l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~-~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~rQd 164 (222)
T TIGR03584 89 LKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ-PNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFPE-H--FNTRSQD 164 (222)
T ss_pred HhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh-CCCCEEEEeeccCCChHHheEECCCCcEEecCCC-c--ccCCCCC
Confidence 211 3479999999999 5589999999999975 3333333322211 010000 0 000000000 0 0000111
Q ss_pred ccccccccccceEeeeHHHHHHcCCC
Q 011596 380 VFINFFGFNGTAGVWRIKALEDSGGW 405 (482)
Q Consensus 380 ~~~~~~~~~G~~~~~Rr~~l~~iGgf 405 (482)
....+..+|+..+++++.+.+.+.+
T Consensus 165 -~~~~y~~nga~y~~~~~~~~~~~~~ 189 (222)
T TIGR03584 165 -LEEAYHDAGQFYWGKSQAWLESGPI 189 (222)
T ss_pred -CchheeeCCeEEEEEHHHHHhcCCc
Confidence 1233446999999999999876544
No 96
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.47 Score=47.17 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=82.4
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCC-CCceEEEEEcCCCCHHHHHHHHHHHHHhh------hCCCeEEEEecc-
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWP-KSKILIQVLDDSDDPTAQTLIKEEVLKWQ------EAGANIVYRHRI- 290 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp-~~~~~IiVvDdssdd~t~~~~~~~~~~~~------~~~v~vv~~~~~- 290 (482)
..|.+.|++=++|..+.++.+++.++.+. | .+++-|||.-|+++..+...++.+-.... .....+.+.+++
T Consensus 65 ~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~~ 143 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRHK 143 (411)
T ss_pred CCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCccc
Confidence 45678999999999999999999999877 5 44677889989888887776664422111 011111111111
Q ss_pred CCCCCcc------ccHHHHhhhcccCCceEEEEEcCCCCCChHHH---HHHHHHhhcCCCeEEEee
Q 011596 291 LRDGYKA------GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFL---RRTVPHFKDNEELGLVQA 347 (482)
Q Consensus 291 ~~~g~Ka------~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L---~~lv~~f~~~p~v~~V~~ 347 (482)
+.++++. .++|+.+. ..+++.++++-+|.-..||+. +.....++.+|.+-+|+.
T Consensus 144 k~~~Yy~IarHYkwAL~q~F~---~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsa 206 (411)
T KOG1413|consen 144 KFNAYYKIARHYKWALNQLFI---VFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSA 206 (411)
T ss_pred ccchhHHHHHHHHHHHhhHHh---hcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeee
Confidence 1122222 23444443 567899999999998888875 455666777888877754
No 97
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.16 Score=50.14 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=102.6
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHH----hCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCC
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVC----NLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll----~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~ 295 (482)
.-+|.||||-+|.++.|.-.+.-+. +|.- .+-|+|++...++.. |
T Consensus 150 r~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL---~y~iyVieQ~g~~~F-------------------------N--- 198 (372)
T KOG3916|consen 150 RHKVAIIIPFRNREEHLRYLLHHLHPFLQRQRL---DYRIYVIEQAGNKPF-------------------------N--- 198 (372)
T ss_pred cceeEEEeecccHHHHHHHHHHHhhHHHHhhhh---ceeEEEEEecCCCcc-------------------------c---
Confidence 3489999999999988877776543 2321 244566653222211 1
Q ss_pred ccccHHHHhhhcc-cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhh
Q 011596 296 KAGNLKSAMNCSY-VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVE 374 (482)
Q Consensus 296 Ka~aln~al~~~~-~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 374 (482)
++.=+|-|+..+. ....|-++|-|-|..+..|. + +-.+. ....-+...+..+.|..
T Consensus 199 RakL~NVGf~eAlkd~~wdCfIFHDVDllPenDr------------N--lY~C~----~~PRH~sva~dk~gy~L----- 255 (372)
T KOG3916|consen 199 RAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR------------N--LYGCP----EQPRHMSVALDKFGYRL----- 255 (372)
T ss_pred HHHhhhhHHHHHHHhcCCCEEEEecccccccCCC------------C--ccCCC----CCCcchhhhhhhccccc-----
Confidence 3333555655432 25677899999998775431 1 00011 01011111111221111
Q ss_pred hhhccccccccccccceEeeeHHHHHHcCCCCCC---CchhHHHHHHHHHHCCCcEEEeccce-----ecc-----cC-C
Q 011596 375 QQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER---TTVEDMDIAVRAHLRGWKFIFLNDVE-----CQC-----EL-P 440 (482)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~---~~~ED~~l~~rl~~~G~ki~~~~~~~-----~~~-----~~-p 440 (482)
....+.|.-+++.++-++++.||+.. -.+||-|++.|+...|++|-=-+... ..+ +. |
T Consensus 256 --------PY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~~k~n~~n~ 327 (372)
T KOG3916|consen 256 --------PYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHHDKGNEPNP 327 (372)
T ss_pred --------cchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecccccCCCCh
Confidence 12224577788899999999999765 34699999999999999875433222 111 11 2
Q ss_pred cCHHHHHHHHHhhhhhhHHHHHH
Q 011596 441 ESYEAYRKQQHRWHSGPMQLFRL 463 (482)
Q Consensus 441 ~t~~~~~~qr~RW~~G~~q~~~~ 463 (482)
..++-..+-..||..-.+.....
T Consensus 328 ~Ry~lL~~tk~r~~~DGLnsl~Y 350 (372)
T KOG3916|consen 328 GRYKLLRNTKERQTQDGLNSLKY 350 (372)
T ss_pred HHHHHHHhhhhhhhhccccceee
Confidence 22444555567777665555443
No 98
>PLN02917 CMP-KDO synthetase
Probab=94.45 E-value=1.3 Score=43.89 Aligned_cols=185 Identities=14% Similarity=0.078 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCc
Q 011596 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (482)
Q Consensus 233 ~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~ 312 (482)
...+..+++.+.+... . .. |+|.. +++...+.+. ..++.++...... .++-.+ ...|++.. ..+.
T Consensus 72 kPLL~~vi~~a~~~~~-~-~~-VVV~~--~~e~I~~~~~-------~~~v~vi~~~~~~-~~GT~~-~~~a~~~l-~~~~ 136 (293)
T PLN02917 72 KPMIQRTWERAKLATT-L-DH-IVVAT--DDERIAECCR-------GFGADVIMTSESC-RNGTER-CNEALKKL-EKKY 136 (293)
T ss_pred EEHHHHHHHHHHcCCC-C-CE-EEEEC--ChHHHHHHHH-------HcCCEEEeCCccc-CCchHH-HHHHHHhc-cCCC
Confidence 3578888888876542 2 22 44443 3344433332 3456555432222 333333 35666532 2347
Q ss_pred eEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHH---hh-hh--hhhhh-h--hhhhccccc
Q 011596 313 EFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQ---DI-NL--SFHFE-V--EQQVNGVFI 382 (482)
Q Consensus 313 d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~---~~-~~--~~~~~-~--~~~~~~~~~ 382 (482)
|+|+++++|. .++++.+.+++..+.++++..+.+........+..-..+.. +- .. .+... . .........
T Consensus 137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~ 216 (293)
T PLN02917 137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ 216 (293)
T ss_pred CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence 8999999999 56999999999988765554443331111101000011110 00 00 00000 0 011000001
Q ss_pred cccccccceEeeeHHHHHHcCCCCCCCc-hhHHHHHHHHHHCCCcEEEecc
Q 011596 383 NFFGFNGTAGVWRIKALEDSGGWMERTT-VEDMDIAVRAHLRGWKFIFLND 432 (482)
Q Consensus 383 ~~~~~~G~~~~~Rr~~l~~iGgf~~~~~-~ED~~l~~rl~~~G~ki~~~~~ 432 (482)
...-.+...++|+++.|.....+..... .|-+..-+++..+|+++..++.
T Consensus 217 ~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~~ 267 (293)
T PLN02917 217 FPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIKV 267 (293)
T ss_pred cceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEEe
Confidence 1122466778899999987765544322 1222223357799999877653
No 99
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=94.36 E-value=0.58 Score=41.87 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.0
Q ss_pred cCCceEEEEEcCCCCCChHHHHHHHHHh
Q 011596 309 VKDYEFVAIFDADFQPNPDFLRRTVPHF 336 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~f 336 (482)
.-+.+|++++|+.+.|.++.|-++...|
T Consensus 136 ~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 136 QLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred hcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 4678999999999999999999988765
No 100
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=94.32 E-value=0.29 Score=45.36 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCC--CHHHHHHHHHHHHHhhhCCCeEEEEeccC---CCCCcc-ccHHHHhhhc
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSD--DPTAQTLIKEEVLKWQEAGANIVYRHRIL---RDGYKA-GNLKSAMNCS 307 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdss--dd~t~~~~~~~~~~~~~~~v~vv~~~~~~---~~g~Ka-~aln~al~~~ 307 (482)
+.|++|-.+...+.-..-++ ++|+-.+. +....+.++++.++|.+ ++...-.+ +...|. ..++.+.++
T Consensus 4 ~~IR~TW~~~~~~~~~~~~~-~FvvG~~~~~~~~~~~~l~~E~~~y~D----il~~d~~D~y~nlt~K~~~~~~w~~~~- 77 (195)
T PF01762_consen 4 QAIRETWGNQRNFKGVRVKV-VFVVGESPNSDSDLQEALQEEAEKYGD----ILQGDFVDSYRNLTLKTLAGLKWASKH- 77 (195)
T ss_pred HHHHHHHhcccccCCCcEEE-EEEEecCCCCcHHHHHHhhhhhhhcCc----eEeeecccccchhhHHHHHHHHHHHhh-
Confidence 56677766655433333233 44554444 55566666666665432 22221111 222232 223333332
Q ss_pred ccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecC-CCChHHHHHhhhhhhhhhhhhhhccccccccc
Q 011596 308 YVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNK-DENLLTRLQDINLSFHFEVEQQVNGVFINFFG 386 (482)
Q Consensus 308 ~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (482)
-.+.+||+.+|+|+.+.++.|...+.....++.-..+.|....... ..+...++. ........... ..+
T Consensus 78 -c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~-------v~~~~y~~~~y-P~y- 147 (195)
T PF01762_consen 78 -CPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWY-------VSEEEYPDDYY-PPY- 147 (195)
T ss_pred -CCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCce-------eeeeecccccC-CCc-
Confidence 3458999999999999998888877776222222223222211110 000001110 00001111111 112
Q ss_pred cccceEeeeHHHHHHcCC---CCCCCchhHHHHHHHHHHCCCcEEE
Q 011596 387 FNGTAGVWRIKALEDSGG---WMERTTVEDMDIAVRAHLRGWKFIF 429 (482)
Q Consensus 387 ~~G~~~~~Rr~~l~~iGg---f~~~~~~ED~~l~~rl~~~G~ki~~ 429 (482)
+.|.+.++.+++++.+.. ..+....||..++.-+...|.+..-
T Consensus 148 ~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~ 193 (195)
T PF01762_consen 148 CSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIH 193 (195)
T ss_pred CCCCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccC
Confidence 579999999999988742 2233456999999999999876543
No 101
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=94.31 E-value=0.63 Score=43.80 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=64.9
Q ss_pred CeEEEEeecCCch---HHHHHHHHHHHhCCCCCCceEEEEEcCCC--CHHHHHHHHHHHHHhhhCCCeEEEEeccCC---
Q 011596 221 PMVLVQIPMCNEK---EVYQQSIAAVCNLDWPKSKILIQVLDDSD--DPTAQTLIKEEVLKWQEAGANIVYRHRILR--- 292 (482)
Q Consensus 221 P~VsViIP~yne~---~~l~~tL~Sll~q~yp~~~~~IiVvDdss--dd~t~~~~~~~~~~~~~~~v~vv~~~~~~~--- 292 (482)
|.+-+|.|+|... ..|.+.-..+..- |+ +.-|||+|+. ++.+.++++ ..|+...+..-..+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV--p~--l~WIVVEd~~~~t~~va~lL~-------~sgl~y~HL~~~~~~~~ 69 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLV--PP--LHWIVVEDSEEKTPLVAELLR-------RSGLMYTHLNAKTPSDP 69 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcC--Cc--eEEEEEeCCCCCCHHHHHHHH-------HcCCceEEeccCCCCCc
Confidence 5789999999987 3444443344332 43 6667888864 556666665 56776665533222
Q ss_pred CCC---ccccHHHHhhhccc----CCceEEEEEcCCCCCChHHHHHHH
Q 011596 293 DGY---KAGNLKSAMNCSYV----KDYEFVAIFDADFQPNPDFLRRTV 333 (482)
Q Consensus 293 ~g~---Ka~aln~al~~~~~----a~~d~Vl~lDaD~~~~pd~L~~lv 333 (482)
+.. -....|.|++.+.. ...-+|.|.|+|...+-+..+++-
T Consensus 70 ~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 70 TWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred ccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 111 12457888887532 345699999999999888777743
No 102
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=94.13 E-value=0.2 Score=48.41 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=64.0
Q ss_pred EEEEeec-CCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHH
Q 011596 223 VLVQIPM-CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (482)
Q Consensus 223 VsViIP~-yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln 301 (482)
.||+|-+ |+..+.|.+.|.++.+..+=. ++.|+-.++...+.. .+++..++.+.++.... ..+|
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l~-~IvVvWn~~~~~P~~--------~~~~~~~vpV~~~~~~~------nsLn 65 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSLR-KIVVVWNNPNPPPPS--------SKWPSTGVPVRVVRSSR------NSLN 65 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTEE-EEEEEEE-TS--THH--------HHHT---S-EEEEEESS------HHGG
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCCC-eEEEEeCCCCCCCcc--------cccCCCCceEEEEecCC------ccHH
Confidence 3788888 999999999999997665532 444444453333322 22334556666653221 1222
Q ss_pred HHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeee
Q 011596 302 SAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQAR 348 (482)
Q Consensus 302 ~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~ 348 (482)
.=+.-...-+.|-|+.+|+|..++++.|+.......++|+ -+|+..
T Consensus 66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pd-rlVGf~ 111 (247)
T PF09258_consen 66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPD-RLVGFP 111 (247)
T ss_dssp GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTT-SEEES-
T ss_pred hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChh-heeCCc
Confidence 2222111456899999999999999999999999998887 344443
No 103
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=93.88 E-value=0.28 Score=47.58 Aligned_cols=110 Identities=16% Similarity=0.068 Sum_probs=56.9
Q ss_pred cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccc
Q 011596 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFN 388 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (482)
..+.+|.+++|+|+.+..+-|.+++..+. |+-...-|.......... ..+..... . ......+...
T Consensus 84 ~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~--~~~~~yiG~~~~~~~~~~-~~~~~~~~----------~-~~~~~~f~~G 149 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYVNVENLRRLLSKYD--PSEPIYIGRPSGDRPIEI-IHRFNPNK----------S-KDSGFWFATG 149 (252)
T ss_dssp HHT-SEEEEEETTEEE-HHHHHHHHTTS---TTS--EEE-EE----------------------------------EE-G
T ss_pred cCCceEEEEEeCCceecHHHHHHHHhhCC--CccCEEeeeeccCcccee-eccccccc----------c-CcCceEeeCC
Confidence 45779999999999999999999999885 443444344322211111 00000000 0 0000112246
Q ss_pred cceEeeeHHHHHHcC------CCCCC----CchhHHHHHHHHHH-CCCcEEEecc
Q 011596 389 GTAGVWRIKALEDSG------GWMER----TTVEDMDIAVRAHL-RGWKFIFLND 432 (482)
Q Consensus 389 G~~~~~Rr~~l~~iG------gf~~~----~~~ED~~l~~rl~~-~G~ki~~~~~ 432 (482)
|+++++.|.+++++. .+... ...||+.++.-+.. .|.+....+.
T Consensus 150 GaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~ 204 (252)
T PF02434_consen 150 GAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL 204 (252)
T ss_dssp GG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred CeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence 889999999999972 23222 34799999999999 8988877554
No 104
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.81 E-value=1.9 Score=41.24 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=90.4
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+.+.. -+++ |++.|+ +...+.+ + ..+++++.. .....||. ..+..+++.....
T Consensus 22 ~GkPli~~~le~~~~~~--~d~V-vVvt~~---~~i~~~~----~---~~g~~~v~~-~~~~~~Gt-~r~~~~~~~l~~~ 86 (238)
T TIGR00466 22 FGKPMIVHVAENANESG--ADRC-IVATDD---ESVAQTC----Q---KFGIEVCMT-SKHHNSGT-ERLAEVVEKLALK 86 (238)
T ss_pred CCcCHHHHHHHHHHhCC--CCeE-EEEeCH---HHHHHHH----H---HcCCEEEEe-CCCCCChh-HHHHHHHHHhCCC
Confidence 34567888888877643 2243 334432 2333222 2 345665532 22223322 2333344321123
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeeeeeeecCC----CChHHHHHhh-hhh--hhhh---hhhhh--
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFVNKD----ENLLTRLQDI-NLS--FHFE---VEQQV-- 377 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~----~~~~~~~~~~-~~~--~~~~---~~~~~-- 377 (482)
+.|+|+++|+|. .++|+.+.+++..+.+ ++.+++.......+.. .+......+. ... +... ..+..
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~-~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~ 165 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNLAT-KNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFA 165 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHhc-CCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCccc
Confidence 568999999998 5799999999999853 3333333322211100 0000000000 000 0000 00000
Q ss_pred --ccccccccccccceEeeeHHHHHHcCCCCCC--CchhHHHHHHHHHHCCCcEEEec
Q 011596 378 --NGVFINFFGFNGTAGVWRIKALEDSGGWMER--TTVEDMDIAVRAHLRGWKFIFLN 431 (482)
Q Consensus 378 --~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~--~~~ED~~l~~rl~~~G~ki~~~~ 431 (482)
.......+-..-....||+++|++.-.+.+. ...|+.+ .+|+..+|+++....
T Consensus 166 ~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~le-qlr~le~g~~i~~~~ 222 (238)
T TIGR00466 166 KRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLE-QLRVLYYGEKIHVKI 222 (238)
T ss_pred ccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhH-HHhhhhcCCceEEEE
Confidence 0000000112344578999999997666544 2346666 578889999997755
No 105
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=93.33 E-value=4 Score=38.46 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCce
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYE 313 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d 313 (482)
..+.++.+...+.. -++ |+|.-| |....+.++ ..|..++.......+| ..-+..+++.....+.+
T Consensus 29 pmI~rV~e~a~~s~--~~r--vvVATD--de~I~~av~-------~~G~~avmT~~~h~SG--TdR~~Ev~~~l~~~~~~ 93 (247)
T COG1212 29 PMIVRVAERALKSG--ADR--VVVATD--DERIAEAVQ-------AFGGEAVMTSKDHQSG--TDRLAEVVEKLGLPDDE 93 (247)
T ss_pred hHHHHHHHHHHHcC--CCe--EEEEcC--CHHHHHHHH-------HhCCEEEecCCCCCCc--cHHHHHHHHhcCCCcce
Confidence 46666776666543 223 434332 344444444 4567776654444555 34466666654345789
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHH----Hhh-hhhhhhhhhhh--hcccccccc
Q 011596 314 FVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRL----QDI-NLSFHFEVEQQ--VNGVFINFF 385 (482)
Q Consensus 314 ~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~----~~~-~~~~~~~~~~~--~~~~~~~~~ 385 (482)
+|+.+-+|. .++|..+..++..+++ .+.++++......+..+-+-... ..- .++.+|..... .....+. .
T Consensus 94 iIVNvQGDeP~i~p~~I~~~~~~L~~-~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~-~ 171 (247)
T COG1212 94 IIVNVQGDEPFIEPEVIRAVAENLEN-SNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGG-T 171 (247)
T ss_pred EEEEccCCCCCCCHHHHHHHHHHHHh-CCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccCC-c
Confidence 999999998 6699999999999986 47777776655443322110000 000 11211111100 0000000 1
Q ss_pred cccc--ceEeeeHHHHHHcCCCCCCCc--hhHHHHHHHHHHCCCcEEEe
Q 011596 386 GFNG--TAGVWRIKALEDSGGWMERTT--VEDMDIAVRAHLRGWKFIFL 430 (482)
Q Consensus 386 ~~~G--~~~~~Rr~~l~~iGgf~~~~~--~ED~~l~~rl~~~G~ki~~~ 430 (482)
++-. ....||++++++...+.+... .|+.+ .+|+..+|.++...
T Consensus 172 p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LE-QLR~Le~G~kI~v~ 219 (247)
T COG1212 172 PFLRHIGIYAYRAGFLERFVALKPSPLEKIESLE-QLRVLENGEKIHVE 219 (247)
T ss_pred chhheeehHHhHHHHHHHHHhcCCchhHHHHHHH-HHHHHHcCCeeEEE
Confidence 1222 235689999999888766422 24444 67888899998663
No 106
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=1.2 Score=43.83 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCeEEEEeecCCch---HHHHHHHHHHHhCCCCCCceEEEEEcCC--CCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCC
Q 011596 220 FPMVLVQIPMCNEK---EVYQQSIAAVCNLDWPKSKILIQVLDDS--DDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG 294 (482)
Q Consensus 220 ~P~VsViIP~yne~---~~l~~tL~Sll~q~yp~~~~~IiVvDds--sdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g 294 (482)
.|.|-||.|+|+.. ..|.+.-..+. + .|+ +.-|||+|+ ..+.+..+++ ..|+...+.....+.+
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~-~-V~n--LhWIVVEd~~~~~p~v~~~L~-------rtgl~ythl~~~t~~~ 154 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLR-L-VPN--LHWIVVEDGEGTTPEVSGILR-------RTGLPYTHLVHKTPMG 154 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHh-h-cCC--eeEEEEecCCCCCHHHHHHHH-------HcCCceEEEeccCCCC
Confidence 78999999999998 23333322332 2 244 566788885 5666666666 5677777766666666
Q ss_pred Cc----cccHHHHhhhcc-----c-CCceEEEEEcCCCCCChHHHHHHHHHh
Q 011596 295 YK----AGNLKSAMNCSY-----V-KDYEFVAIFDADFQPNPDFLRRTVPHF 336 (482)
Q Consensus 295 ~K----a~aln~al~~~~-----~-a~~d~Vl~lDaD~~~~pd~L~~lv~~f 336 (482)
+| -.+.|.|++.+. . ...-+|.|-|+|...+-+...+ ++..
T Consensus 155 ~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v 205 (330)
T KOG1476|consen 155 YKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV 205 (330)
T ss_pred CccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence 66 346788887642 2 3456888899999988777766 4433
No 107
>PLN02458 transferase, transferring glycosyl groups
Probab=92.33 E-value=2.6 Score=41.81 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=62.7
Q ss_pred CCCeEEEEeecCC-ch---HHHHHHHHHHHhCCCCCCceEEEEEcCC-CCHHHHHHHHHHHHHhhhCCCeEEEEeccCCC
Q 011596 219 FFPMVLVQIPMCN-EK---EVYQQSIAAVCNLDWPKSKILIQVLDDS-DDPTAQTLIKEEVLKWQEAGANIVYRHRILRD 293 (482)
Q Consensus 219 ~~P~VsViIP~yn-e~---~~l~~tL~Sll~q~yp~~~~~IiVvDds-sdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~ 293 (482)
..+.+-||.|+|. .. ..|.+.-..+..-.+ + +.-|||+|+ ..+.+.++++ ..|+...+..-..+-
T Consensus 110 ~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~-p--L~WIVVEd~~~t~~va~lLr-------rsGl~y~HL~~k~~~ 179 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPP-P--LLWIVVEGQSDSEEVSEMLR-------KTGIMYRHLVFKENF 179 (346)
T ss_pred CCceEEEECCCCCCcchhHHHHHHHHHHHhcCCC-C--ceEEEEeCCCCCHHHHHHHH-------HcCCceEEeccCCCC
Confidence 4567999999998 33 344444444443322 3 445677764 4445555555 567765554322221
Q ss_pred ----CCccccHHHHhhhccc-CCceEEEEEcCCCCCChHHHHHH
Q 011596 294 ----GYKAGNLKSAMNCSYV-KDYEFVAIFDADFQPNPDFLRRT 332 (482)
Q Consensus 294 ----g~Ka~aln~al~~~~~-a~~d~Vl~lDaD~~~~pd~L~~l 332 (482)
+......|.|++.+.. ...-+|.|.|+|...+-+..+++
T Consensus 180 ~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 180 TDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred CCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 1123458889987532 23568999999999888777764
No 108
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=92.10 E-value=0.28 Score=54.36 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=92.2
Q ss_pred CccccHHHHhhhcccCCceEEEEEcCC--CCCCh-HHHHHHHHHhhc-----------------CCCeEEEeeeeeeecC
Q 011596 295 YKAGNLKSAMNCSYVKDYEFVAIFDAD--FQPNP-DFLRRTVPHFKD-----------------NEELGLVQARWSFVNK 354 (482)
Q Consensus 295 ~Ka~aln~al~~~~~a~~d~Vl~lDaD--~~~~p-d~L~~lv~~f~~-----------------~p~v~~V~~~~~~~n~ 354 (482)
||..|.|+|+- -.+||++-.+|+. ..++. =-++.+++.|++ .+.+.+++.+......
T Consensus 275 GK~eNQNhaii---F~rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~ 351 (817)
T PF02364_consen 275 GKPENQNHAII---FTRGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSE 351 (817)
T ss_pred CCccccceeEE---EEccccccccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecC
Confidence 69999999987 5899999999985 33332 224567777764 1356788888777666
Q ss_pred CCChHHHHHhhhhhhhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCCC----CchhHHHHHHHHHHCCCcEEEe
Q 011596 355 DENLLTRLQDINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER----TTVEDMDIAVRAHLRGWKFIFL 430 (482)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~----~~~ED~~l~~rl~~~G~ki~~~ 430 (482)
..+.++......-....+..+...+...... --|+-=++.+-....-||.+.. ++.||+.-++-...+|.++.+.
T Consensus 352 ~vg~L~~~aa~qE~~F~Tl~qR~la~p~~rl-HYGHPD~~n~~f~~TRGGvSKAsk~lhLsEDIfaG~n~~lRGG~i~h~ 430 (817)
T PF02364_consen 352 NVGSLGDFAAGQEQSFGTLFQRTLANPLVRL-HYGHPDVFNRIFMTTRGGVSKASKGLHLSEDIFAGMNATLRGGRIKHC 430 (817)
T ss_pred CcchHHHHhhhhhHHHHHHHHHHHhcchhhc-cCCCchhhhhhheeccCccchHhhcccccHHHHHHHHHHhcCCceeeh
Confidence 5544443332211111111122111111111 1244434444444444666432 7789999999999999999998
Q ss_pred ccceecccCCcCHHHHHHHHHhhhhhhHH
Q 011596 431 NDVECQCELPESYEAYRKQQHRWHSGPMQ 459 (482)
Q Consensus 431 ~~~~~~~~~p~t~~~~~~qr~RW~~G~~q 459 (482)
....|=-..-..+.+...--.+-+.|+-+
T Consensus 431 ey~qcGKGRD~Gf~~I~~F~~KI~~G~GE 459 (817)
T PF02364_consen 431 EYIQCGKGRDVGFNSILNFETKIASGMGE 459 (817)
T ss_pred hhhhcccccccCchhhhhhHhHhcCCccc
Confidence 87665222223344444444445555443
No 109
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=91.52 E-value=0.43 Score=46.90 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=69.1
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccC--CCC----C
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL--RDG----Y 295 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~--~~g----~ 295 (482)
.++-.|-+.||...++++|+|++..- ++. | +.-+.++|.|.+++.++.+++|+ -+++.|-.... +.. .
T Consensus 88 ~~~~~iRvKnE~~tl~~si~S~Lpai---~~g-V-I~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n~~~~~n~ 161 (347)
T PF06306_consen 88 NPWAFIRVKNEAMTLAESIESILPAI---DEG-V-IGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIKNPKSEENS 161 (347)
T ss_pred CcceEEEEcchhhhHHHHHHHHHHHH---hcc-E-EEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhccCCchhhhh
Confidence 46788899999999999999999632 132 4 44444566678999999999985 35554432111 111 1
Q ss_pred ccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHH
Q 011596 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTV 333 (482)
Q Consensus 296 Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv 333 (482)
...=.|+++.. ..+++|++=+|+|.+..+.-|-+..
T Consensus 162 l~~YYNy~ls~--ipk~~w~iKID~DhIy~~~KL~ksf 197 (347)
T PF06306_consen 162 LYNYYNYVLSF--IPKNEWAIKIDADHIYDTKKLYKSF 197 (347)
T ss_pred hhhhhhhhhcc--cccceEEEEeccceeecHHHHhhhh
Confidence 11223344442 4678999999999999988874444
No 110
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=90.88 E-value=2.3 Score=38.92 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....++.+++.+++... ++ |+|+-+...+......+...+ ..++.++.... ...| ...++..|++.....
T Consensus 24 ~g~~ll~~~i~~~~~~~~--~~--i~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~G-~~~si~~gl~~~~~~ 94 (190)
T TIGR03202 24 GETTLGSASLKTALSSRL--SK--VIVVIGEKYAHLSWLDPYLLA---DERIMLVCCRD-ACEG-QAHSLKCGLRKAEAM 94 (190)
T ss_pred CCccHHHHHHHHHHhCCC--Cc--EEEEeCCccchhhhhhHhhhc---CCCeEEEECCC-hhhh-HHHHHHHHHHHhccC
Confidence 556788888877665332 23 344433333222111111111 23444443221 1223 556777788742223
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~ 341 (482)
+.|+++++++|. .++++.+.+++..+..++.
T Consensus 95 ~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 95 GADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 579999999999 6699999999998865443
No 111
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.23 E-value=2.7 Score=37.87 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=56.2
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....++.+++.+.... -++ |+|+-+.......+.+ . ..++.++. ......|...++..|++.. ..
T Consensus 24 ~g~~li~~~i~~l~~~~--~~~--i~vv~~~~~~~~~~~~----~---~~~~~~~~--~~~~~~G~~~~i~~al~~~-~~ 89 (186)
T cd04182 24 DGKPLLRHALDAALAAG--LSR--VIVVLGAEADAVRAAL----A---GLPVVVVI--NPDWEEGMSSSLAAGLEAL-PA 89 (186)
T ss_pred CCeeHHHHHHHHHHhCC--CCc--EEEECCCcHHHHHHHh----c---CCCeEEEe--CCChhhCHHHHHHHHHHhc-cc
Confidence 44568888888887752 223 3333332222222111 1 23444332 2222223667788888742 11
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
+.|+++++.+|+ .++++.+++++..+..++
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 120 (186)
T cd04182 90 DADAVLILLADQPLVTAETLRALIDAFREDG 120 (186)
T ss_pred cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCC
Confidence 379999999999 679999999999886433
No 112
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=89.62 E-value=2.4 Score=37.38 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=61.4
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|. +....++.+++.+.+... ++ |+|+-.. +...+.+ ...+++++.. +....+-..++..|++.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~~~--~~--Ivvv~~~--~~~~~~~-------~~~~~~~v~~--~~~~~G~~~sl~~a~~~ 82 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREAGV--DD--IVVVTGE--EEIYEYL-------ERYGIKVVVD--PEPGQGPLASLLAALSQ 82 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHHTE--SE--EEEEEST--HHHHHHH-------TTTTSEEEE---STSSCSHHHHHHHHHHT
T ss_pred eeE-CCccHHHHHHHHhhccCC--ce--EEEecCh--HHHHHHH-------hccCceEEEe--ccccCChHHHHHHHHHh
Confidence 444 666788888888877642 23 4444433 3232222 1456776643 22223477788888873
Q ss_pred cccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
..+.+.++++.+|. .++++.+++++..+.+++
T Consensus 83 --~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~ 115 (160)
T PF12804_consen 83 --LPSSEPVLVLPCDQPFLSPELLRRLLEALEKSP 115 (160)
T ss_dssp --STTSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred --cccCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence 22889999999999 569999999999997544
No 113
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=89.08 E-value=5.2 Score=37.50 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=59.0
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|.-+ ...+..+++++.+... .++.| |+ ....+...+.+. ..++.++. +.... +.++++..|+..
T Consensus 21 ~~v~g-kpli~~~i~~l~~~~i--~~i~i-v~-~~~~~~i~~~~~-------~~~~~~~~--~~~~~-g~~~ai~~a~~~ 85 (229)
T cd02540 21 HPLAG-KPMLEHVLDAARALGP--DRIVV-VV-GHGAEQVKKALA-------NPNVEFVL--QEEQL-GTGHAVKQALPA 85 (229)
T ss_pred ceeCC-ccHHHHHHHHHHhCCC--CeEEE-EE-CCCHHHHHHHhC-------CCCcEEEE--CCCCC-CCHHHHHHHHHh
Confidence 34444 4788999999887553 23333 33 222333333222 23455443 33333 377888888874
Q ss_pred cccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
. ..+.|.++++++|. .+++..+.+++..+.+
T Consensus 86 ~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 86 L-KDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred h-ccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 2 11268899999998 5688999999988865
No 114
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=88.78 E-value=4.9 Score=39.89 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=68.5
Q ss_pred CCeEEEEeecCCch--HHHHHHHHHHHhCCCCCC--ceEEEE-EcCCCCHHHHHHHHHHHHHhhh---CC-CeEEEEecc
Q 011596 220 FPMVLVQIPMCNEK--EVYQQSIAAVCNLDWPKS--KILIQV-LDDSDDPTAQTLIKEEVLKWQE---AG-ANIVYRHRI 290 (482)
Q Consensus 220 ~P~VsViIP~yne~--~~l~~tL~Sll~q~yp~~--~~~IiV-vDdssdd~t~~~~~~~~~~~~~---~~-v~vv~~~~~ 290 (482)
-++++|=||+-..+ ..+..||.|+++.--|.+ .+.|+| +-|.+.+....+.++....+++ .| +.++..+..
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 44699999998876 899999999998666643 233333 4444433333444433333321 22 233321111
Q ss_pred ---C-----CC-C--------CccccHHHHh--hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 291 ---L-----RD-G--------YKAGNLKSAM--NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 291 ---~-----~~-g--------~Ka~aln~al--~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
. .+ | .-..++.+++ ... ...++|.+.+.+|.+..|+|+.++......
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~-~~~~~YyL~LEDDVia~~~f~~~i~~~v~~ 196 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC-QNLGDYYLQLEDDVIAAPGFLSRIKRFVEA 196 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH-HhcCCeEEEecCCeEechhHHHHHHHHHHH
Confidence 0 00 0 0011333322 211 346899999999999999999999888865
No 115
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=88.44 E-value=5.5 Score=36.05 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=56.7
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+.+... +++ ++|+.+..+. . .+.... ..++.++. .+....|...++..|++. ..
T Consensus 23 ~g~pll~~~i~~l~~~~~--~~i-ivv~~~~~~~-~---~~~~~~---~~~v~~v~--~~~~~~g~~~si~~~l~~--~~ 88 (188)
T TIGR03310 23 KGKTILEHVVDNALRLFF--DEV-ILVLGHEADE-L---VALLAN---HSNITLVH--NPQYAEGQSSSIKLGLEL--PV 88 (188)
T ss_pred CCeeHHHHHHHHHHHcCC--CcE-EEEeCCcHHH-H---HHHhcc---CCCeEEEE--CcChhcCHHHHHHHHhcC--CC
Confidence 446788888888876542 233 3344443222 1 111111 23455443 222212255666667662 24
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~ 341 (482)
+.|+++++++|. .++++.+++++..+..++.
T Consensus 89 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 89 QSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 578999999999 5799999999998765454
No 116
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=88.09 E-value=0.22 Score=49.12 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=53.6
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc---------C
Q 011596 222 MVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---------L 291 (482)
Q Consensus 222 ~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~---------~ 291 (482)
.|.|+||+-+.. ...-+.-+.+++ + +++|||-|++......+.+ |.......+. .
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~----~--~hliiv~d~~~~~~~~~p~---------g~~~~~y~~~di~~~lg~~~ 73 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS----P--YHLIIVQDPDPNEEIKVPE---------GFDYEVYNRNDIERVLGAKT 73 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc----c--eeEEEEeCCCccccccCCc---------ccceeeecHhhHHhhcCCcc
Confidence 589999998843 233333444443 2 4466666654443322211 2211111111 1
Q ss_pred CCCCccc-cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 292 RDGYKAG-NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 292 ~~g~Ka~-aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
...+|.. ..+.|+- .++.+|++++|+|+.+..|.--..+..+.+
T Consensus 74 ~i~~~~~a~R~fGyL---~s~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 74 LIPFKGDACRNFGYL---VSKKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred cccccccchhhhHhh---hcccceEEEEccccccccCCccceehhhhc
Confidence 1122333 3555665 578899999999999987766555555544
No 117
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=87.67 E-value=19 Score=38.57 Aligned_cols=173 Identities=16% Similarity=0.208 Sum_probs=90.1
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhh-CCCeEEEEeccCCCCCcc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQE-AGANIVYRHRILRDGYKA 297 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~-~~v~vv~~~~~~~~g~Ka 297 (482)
..++|.|++=+|-.+ .+.+.+..+.+... .+.++|.-++.+. .+.+++...+.+. ..+.+... +|.|.-.
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~~p~---~~Dl~ITt~~~~~--~~~i~~~l~~~~~~~~~~v~vv---~NrGRDi 333 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLANIPF---PYDLFITTDSEEK--KEEIEEILAKRPGFKNAEVRVV---ENRGRDI 333 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHhCCC---CeEEEEECCchhh--HHHHHHHHHhccCCCceEEEEe---CCCCccH
Confidence 356899999998875 56666676665433 3456665443322 2334444433322 23444432 4555344
Q ss_pred ccHHHHhhhc-ccCCceEEEEEcCCCCCC--------------------hHHHHHHHHHhhcCCCeEEEeeeeeeecCC-
Q 011596 298 GNLKSAMNCS-YVKDYEFVAIFDADFQPN--------------------PDFLRRTVPHFKDNEELGLVQARWSFVNKD- 355 (482)
Q Consensus 298 ~aln~al~~~-~~a~~d~Vl~lDaD~~~~--------------------pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~- 355 (482)
+.+-.+++.. ...++|+|+.+.+--.+. ++.+.+++..|+++|++|+|.+...+....
T Consensus 334 ~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P~~~~~~~~~ 413 (498)
T PF05045_consen 334 LPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIPDISHFRYPT 413 (498)
T ss_pred HHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeCCcccccccc
Confidence 4443223221 136899999986643332 345667788888899999998875222111
Q ss_pred --CChHHHHHhhh-hhhhhhhhhhhccccccccccccceEeeeHHHHHHc
Q 011596 356 --ENLLTRLQDIN-LSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDS 402 (482)
Q Consensus 356 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~i 402 (482)
..|......+. ..-......... ...+....|+++-+|.++++.+
T Consensus 414 ~~~~w~~N~~~~~~L~~rlg~~~~~~--~~~~~~p~GtMFW~R~~AL~~L 461 (498)
T PF05045_consen 414 IGDAWGENREIMKELAKRLGITKPID--DDTFFFPYGTMFWFRPEALRPL 461 (498)
T ss_pred ccccccccHHHHHHHHHHcCCCCCCc--cCCccccCccEEEeeHHHHHHH
Confidence 11211111111 110000000000 1112123599999999999886
No 118
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=85.55 E-value=5.8 Score=37.54 Aligned_cols=99 Identities=10% Similarity=0.129 Sum_probs=55.3
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+.+...-+ ++ ++|+++...+...+.+ .++.....++... ..+.+ ....+..|++. ..
T Consensus 28 ~gkpll~~~i~~~~~~~~~~-~i-vVv~~~~~~~~~~~~~----~~~~~~~~~~~~v--~~g~~-r~~sv~~gl~~--~~ 96 (230)
T PRK13385 28 VGEPIFIHALRPFLADNRCS-KI-IIVTQAQERKHVQDLM----KQLNVADQRVEVV--KGGTE-RQESVAAGLDR--IG 96 (230)
T ss_pred CCeEHHHHHHHHHHcCCCCC-EE-EEEeChhhHHHHHHHH----HhcCcCCCceEEc--CCCch-HHHHHHHHHHh--cc
Confidence 45678888999887643222 33 3445432222222222 2221110011111 12222 34667777774 23
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
+.+++++.|+|. .++++.+++++..+..++
T Consensus 97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 97 NEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred CCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 468999999998 669999999999987543
No 119
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=85.44 E-value=8.3 Score=36.03 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=57.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc-CCCCCccccHHHHh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI-LRDGYKAGNLKSAM 304 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~-~~~g~Ka~aln~al 304 (482)
++|..+. ..+...+.++.+..... |+|+-+...+...+.+.. ...++++.+.... ...| -++++..++
T Consensus 24 llpi~g~-~li~~~l~~l~~~gi~~----i~iv~~~~~~~i~~~~~~-----~~~~~~i~~~~~~~~~~g-~~~~l~~~~ 92 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAAGIRR----IVVNTHHLADQIEAHLGD-----SRFGLRITISDEPDELLE-TGGGIKKAL 92 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHCCCCE----EEEEccCCHHHHHHHHhc-----ccCCceEEEecCCCcccc-cHHHHHHHH
Confidence 3444555 89999999999876533 444444444444433321 1245666665433 2333 667788887
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHH
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (482)
... +.+.++++++|...+.+....+..+
T Consensus 93 ~~~---~~~~~lv~~~D~i~~~~~~~~~~~~ 120 (221)
T cd06422 93 PLL---GDEPFLVVNGDILWDGDLAPLLLLH 120 (221)
T ss_pred Hhc---CCCCEEEEeCCeeeCCCHHHHHHHH
Confidence 742 3378999999999888766544433
No 120
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=85.17 E-value=11 Score=35.78 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCC
Q 011596 232 EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKD 311 (482)
Q Consensus 232 e~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~ 311 (482)
....++.+++.+.+...- ++ |+|+-+ ++...+.++ +.++++++..... .++.+ .+..++.. .+
T Consensus 26 GkPli~~~i~~l~~~~~~-~~--ivv~t~--~~~i~~~~~-------~~~~~v~~~~~~~-~~g~~-~~~~a~~~---~~ 88 (238)
T PRK13368 26 GKPMIQHVYERAAQAAGV-EE--VYVATD--DQRIEDAVE-------AFGGKVVMTSDDH-LSGTD-RLAEVMLK---IE 88 (238)
T ss_pred CcCHHHHHHHHHHhcCCC-Ce--EEEECC--hHHHHHHHH-------HcCCeEEecCccC-CCccH-HHHHHHHh---CC
Confidence 456788888888875221 23 334332 233333332 3456665543222 23233 35556552 35
Q ss_pred ceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 312 YEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 312 ~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
.|.++++++|. .+.++.+.+++..+..++
T Consensus 89 ~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 89 ADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 68999999998 678999999999886544
No 121
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=85.16 E-value=34 Score=37.57 Aligned_cols=193 Identities=10% Similarity=0.049 Sum_probs=97.9
Q ss_pred CeEEEEeecCCch----HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCc
Q 011596 221 PMVLVQIPMCNEK----EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (482)
Q Consensus 221 P~VsViIP~yne~----~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~K 296 (482)
+.+-|+|.+.-.. +.|++|-..-.... ...-..++++--+.++.+...++++.+.|.+- +..-+...-.+.-.|
T Consensus 385 ~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~-~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDI-Iq~dF~DsY~NLTlK 462 (636)
T PLN03133 385 LDLFIGVFSTANNFKRRMAVRRTWMQYDAVR-SGAVAVRFFVGLHKNQMVNEELWNEARTYGDI-QLMPFVDYYSLITWK 462 (636)
T ss_pred eEEEEEEeCCcccHHHHHHHHHhhccccccC-CCceEEEEEEecCCcHHHHHHHHHHHHHcCCe-EEEeeechhhhhHHH
Confidence 3456666555332 56666665421111 11112234443345566666676666655431 111222211222223
Q ss_pred ccc-HHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeee-----cCCCChHHHHHhhhhhhh
Q 011596 297 AGN-LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFV-----NKDENLLTRLQDINLSFH 370 (482)
Q Consensus 297 a~a-ln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~-----n~~~~~~~~~~~~~~~~~ 370 (482)
.-. +..+.. ..+.+||+-.|+|+.+..+-|.+.+.... +.-++..|..... +....|+-
T Consensus 463 tl~~~~wa~~---c~~akFilK~DDDvFVnv~~Ll~~L~~~~--~~~~Ly~G~v~~~~~PiRd~~sKWYV---------- 527 (636)
T PLN03133 463 TLAICIFGTE---VVSAKYVMKTDDDAFVRVDEVLASLKRTN--VSHGLLYGLINSDSQPHRNPDSKWYI---------- 527 (636)
T ss_pred HHHHHHHHHh---CCCceEEEEcCCceEEcHHHHHHHHHhcC--CCCceEEEEeccCCCcccCCCCCCCC----------
Confidence 321 223333 35789999999999998877766664332 2223444543221 11111110
Q ss_pred hhhhhhhccccccccccccceEeeeHHHHHHcC-----CCCCCCchhHHHHHHHHHH---CCCcEEEeccc
Q 011596 371 FEVEQQVNGVFINFFGFNGTAGVWRIKALEDSG-----GWMERTTVEDMDIAVRAHL---RGWKFIFLNDV 433 (482)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG-----gf~~~~~~ED~~l~~rl~~---~G~ki~~~~~~ 433 (482)
............+ +.|.+.++.+++.+.+- ...+..-.||..++.-+.. .|.++.|..+.
T Consensus 528 -s~~eyp~~~YPpY--asG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~ 595 (636)
T PLN03133 528 -SPEEWPEETYPPW--AHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDG 595 (636)
T ss_pred -CHHHCCCCCCCCC--CCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCC
Confidence 0001111111122 68999999999998862 1223344799999998753 47777666554
No 122
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=84.44 E-value=9.4 Score=35.25 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=54.5
Q ss_pred CCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhccc
Q 011596 230 CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYV 309 (482)
Q Consensus 230 yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~ 309 (482)
.| ...+..+++++.+.... ++ ++++.. ..+...+.+. .....+..+.+.......| .++++..++..
T Consensus 27 ~g-~pli~~~l~~l~~~g~~--~i-~vv~~~-~~~~i~~~~~----~~~~~~~~i~~~~~~~~~g-~~~al~~~~~~--- 93 (217)
T cd04181 27 AG-KPILEYIIERLARAGID--EI-ILVVGY-LGEQIEEYFG----DGSKFGVNIEYVVQEEPLG-TAGAVRNAEDF--- 93 (217)
T ss_pred CC-eeHHHHHHHHHHHCCCC--EE-EEEecc-CHHHHHHHHc----ChhhcCceEEEEeCCCCCc-cHHHHHHhhhh---
Confidence 44 47889999998886532 33 334433 3333333222 1111345555543333333 67778777774
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHhh
Q 011596 310 KDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 310 a~~d~Vl~lDaD~~~~pd~L~~lv~~f~ 337 (482)
...+.++++++|...+.+. .+++..+.
T Consensus 94 ~~~~~~lv~~~D~~~~~~~-~~~~~~~~ 120 (217)
T cd04181 94 LGDDDFLVVNGDVLTDLDL-SELLRFHR 120 (217)
T ss_pred cCCCCEEEEECCeecCcCH-HHHHHHHH
Confidence 2578899999999887774 44555444
No 123
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.16 E-value=11 Score=39.59 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=57.5
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+ ...++.+++.+.+.... ++ +|+-....+...+.+. ..+..+.+.......| .++++..+++
T Consensus 27 ll~v~g-kpli~~~l~~l~~~gi~--~i--vvv~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~G-~~~sl~~a~~ 93 (446)
T PRK14353 27 LHPVAG-RPMLAHVLAAAASLGPS--RV--AVVVGPGAEAVAAAAA-------KIAPDAEIFVQKERLG-TAHAVLAARE 93 (446)
T ss_pred cCEECC-chHHHHHHHHHHhCCCC--cE--EEEECCCHHHHHHHhh-------ccCCCceEEEcCCCCC-cHHHHHHHHH
Confidence 344445 47899999998876532 33 3333333333333222 1122222222223333 5666766765
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCCCe
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEEL 342 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v 342 (482)
.. ....|.++++++|. .++++.+++++...+.+.+.
T Consensus 94 ~l-~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~ 130 (446)
T PRK14353 94 AL-AGGYGDVLVLYGDTPLITAETLARLRERLADGADV 130 (446)
T ss_pred HH-hccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE
Confidence 32 11346788899998 78999999999876543333
No 124
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=1.7 Score=44.08 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=69.7
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccC------CCC
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL------RDG 294 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~------~~g 294 (482)
|.|-+.+-.+|-...+.-.+..+-++|||..+.-|.+--|.+.|.+.++.++-.+...+....+.++.... ..|
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~ 82 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHG 82 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccC
Confidence 44555555666666666666666789999988888887777777777777766554444444555543322 233
Q ss_pred Ccc--------------ccHHHHhhhcccCCceEEEEEcCCCCC-ChHHHHHHHHH
Q 011596 295 YKA--------------GNLKSAMNCSYVKDYEFVAIFDADFQP-NPDFLRRTVPH 335 (482)
Q Consensus 295 ~Ka--------------~aln~al~~~~~a~~d~Vl~lDaD~~~-~pd~L~~lv~~ 335 (482)
.|- .++|.|- ..-.|||+|.|.|+.+ .++.|.-++..
T Consensus 83 pk~W~~sr~q~lm~lKeea~~~~r----~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 83 PKHWPDSRFQHLMSLKEEALNWAR----SGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred CccCchHHHHHHHHHHHHHHHHHH----hhhcceeEEeehhheeeCCchHhHHHhc
Confidence 222 2223222 2457999999999987 56777666543
No 125
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=83.59 E-value=15 Score=34.69 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=53.9
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....++.+++.+.+..-.+ + |+|+-+ .+... +... +.++.+++.......| .++ +..+++.. ..
T Consensus 24 ~gkpll~~~l~~l~~~~~i~-~--ivvv~~--~~~i~----~~~~---~~~~~~~~~~~~~~~g-t~~-~~~~~~~~-~~ 88 (239)
T cd02517 24 AGKPMIQHVYERAKKAKGLD-E--VVVATD--DERIA----DAVE---SFGGKVVMTSPDHPSG-TDR-IAEVAEKL-DA 88 (239)
T ss_pred CCcCHHHHHHHHHHhCCCCC-E--EEEECC--cHHHH----HHHH---HcCCEEEEcCcccCch-hHH-HHHHHHhc-CC
Confidence 34568888888887752112 3 333322 23332 2222 3456666543222223 333 44455421 11
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~ 339 (482)
..|.++++++|. .++++.+.+++..+..+
T Consensus 89 ~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 89 DDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 248899999999 78999999999888654
No 126
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=83.24 E-value=18 Score=34.30 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+.+.. -++ |+|+-+ .+...+.+ . ..++++++.......| ..+ +..++......
T Consensus 25 ~Gkpll~~~l~~l~~~~--i~~--ivvv~~--~~~i~~~~----~---~~~~~v~~~~~~~~~g-t~~-~~~~~~~~~~~ 89 (245)
T PRK05450 25 GGKPMIVRVYERASKAG--ADR--VVVATD--DERIADAV----E---AFGGEVVMTSPDHPSG-TDR-IAEAAAKLGLA 89 (245)
T ss_pred CCcCHHHHHHHHHHhcC--CCe--EEEECC--cHHHHHHH----H---HcCCEEEECCCcCCCc-hHH-HHHHHHhcCCC
Confidence 34568888888887753 223 334333 23333222 2 3456666543322222 322 33344321123
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~ 339 (482)
+.+.++++++|. .++++.+.+++..+..+
T Consensus 90 ~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 90 DDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 468999999999 78999999999987643
No 127
>PLN03153 hypothetical protein; Provisional
Probab=82.92 E-value=3.8 Score=43.31 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=61.0
Q ss_pred cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhhhhhhhccccccccccc
Q 011596 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFGFN 388 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (482)
..+.+|++++|+|+.+..+-|.+.++.+.. .+--.++........ +.. +...+.+.
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDp-tkp~YIGs~Se~~~q---------n~~--------------f~~~fA~G 263 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDP-SEMVYVGGPSESHSA---------NSY--------------FSHNMAFG 263 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCC-CCCEEeccccccccc---------ccc--------------cccccccC
Confidence 467899999999999987777777777642 222233332211111 000 00112367
Q ss_pred cceEeeeHHHHHHcCCCC-------CCCchhHHHHHHHHHHCCCcEEEec
Q 011596 389 GTAGVWRIKALEDSGGWM-------ERTTVEDMDIAVRAHLRGWKFIFLN 431 (482)
Q Consensus 389 G~~~~~Rr~~l~~iGgf~-------~~~~~ED~~l~~rl~~~G~ki~~~~ 431 (482)
|+++++.+.+++.+.... +...++|..++.-+...|.+....+
T Consensus 264 GAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~ 313 (537)
T PLN03153 264 GGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREP 313 (537)
T ss_pred CceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecC
Confidence 999999996666543221 1235688999999999887765544
No 128
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=82.86 E-value=8.9 Score=36.22 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=56.7
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhh-hCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ-EAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~-~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
+|..+. ..+..+++++.++... ++ ++|+. ...+...+.+. .++ ..++.+++.......| -++++..+..
T Consensus 26 lpv~g~-pli~~~l~~l~~~g~~--~v-~iv~~-~~~~~~~~~l~----~~~~~~~~~i~~~~~~~~~G-~~~al~~a~~ 95 (233)
T cd06425 26 VEFCNK-PMIEHQIEALAKAGVK--EI-ILAVN-YRPEDMVPFLK----EYEKKLGIKITFSIETEPLG-TAGPLALARD 95 (233)
T ss_pred CeECCc-chHHHHHHHHHHCCCc--EE-EEEee-eCHHHHHHHHh----cccccCCeEEEeccCCCCCc-cHHHHHHHHH
Confidence 455554 7899999999887543 33 33333 33333333333 221 3456666543333333 6677777776
Q ss_pred hcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
.....+.+ ++++.+|...+.+ +.+++..+..
T Consensus 96 ~~~~~~~~-~lv~~~D~~~~~~-~~~~~~~~~~ 126 (233)
T cd06425 96 LLGDDDEP-FFVLNSDVICDFP-LAELLDFHKK 126 (233)
T ss_pred HhccCCCC-EEEEeCCEeeCCC-HHHHHHHHHH
Confidence 42111245 5677999887766 4777776654
No 129
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=82.70 E-value=10 Score=34.65 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=53.8
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....++.+++.+. ... ++ |+|+-+.... . .. ..+++++........| ...++..|++ ..
T Consensus 28 ~g~~ll~~~i~~l~-~~~--~~--i~vv~~~~~~---~-~~-------~~~~~~v~~~~~~~~g-~~~~i~~~l~---~~ 87 (193)
T PRK00317 28 NGKPLIQHVIERLA-PQV--DE--IVINANRNLA---R-YA-------AFGLPVIPDSLADFPG-PLAGILAGLK---QA 87 (193)
T ss_pred CCEEHHHHHHHHHh-hhC--CE--EEEECCCChH---H-HH-------hcCCcEEeCCCCCCCC-CHHHHHHHHH---hc
Confidence 45678888888876 222 12 4444322211 1 11 2345544221111123 4567777887 35
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
+.|+++++++|. .++++.+++++..+.+++
T Consensus 88 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (193)
T PRK00317 88 RTEWVLVVPCDTPFIPPDLVARLAQAAGKDD 118 (193)
T ss_pred CCCeEEEEcCCcCCCCHHHHHHHHHhhhcCC
Confidence 679999999999 669999999999875433
No 130
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=82.40 E-value=18 Score=33.52 Aligned_cols=93 Identities=12% Similarity=0.114 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCc
Q 011596 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (482)
Q Consensus 233 ~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~ 312 (482)
...+..+++.+.+.... + |+|+-+..++...+.+.+. ...++.+.+.......| .++++..+++. ...
T Consensus 29 ~pli~~~l~~l~~~g~~--~--v~vv~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~G-~~~~l~~a~~~---~~~ 96 (223)
T cd06915 29 RPFLEYLLEYLARQGIS--R--IVLSVGYLAEQIEEYFGDG----YRGGIRIYYVIEPEPLG-TGGAIKNALPK---LPE 96 (223)
T ss_pred cchHHHHHHHHHHCCCC--E--EEEEcccCHHHHHHHHcCc----cccCceEEEEECCCCCc-chHHHHHHHhh---cCC
Confidence 46788888888876432 3 3444443334433333210 01244544443333344 66777778774 245
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 313 EFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 313 d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
+.++++++|...+++ +.+++..+.+
T Consensus 97 ~~~lv~~~D~~~~~~-~~~~l~~~~~ 121 (223)
T cd06915 97 DQFLVLNGDTYFDVD-LLALLAALRA 121 (223)
T ss_pred CCEEEEECCcccCCC-HHHHHHHHHh
Confidence 789999999977655 6677776653
No 131
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=82.22 E-value=12 Score=39.59 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=72.2
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCC-ceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCcc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKS-KILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKA 297 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~-~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka 297 (482)
.....+.++-+||.-+.|...+....+. |.- ++.|+-.+-+..+.- +..+. ...+.+.++.. |.
T Consensus 441 ~~qgFTlim~TYdR~d~L~k~v~~ys~v--PsL~kIlVVWNnq~k~PP~-es~~~------~~~VPlr~r~q------ke 505 (691)
T KOG1022|consen 441 HSQGFTLIMLTYDRVDLLKKLVKHYSRV--PSLKKILVVWNNQGKNPPP-ESLEP------DIAVPLRFRQQ------KE 505 (691)
T ss_pred cccceeeeeehHHHHHHHHHHHHHHhhC--CCcceEEEEecCCCCCCCh-hhccc------cCCccEEEEeh------hh
Confidence 4567999999999888888888876553 442 443333332222211 11111 23355444422 33
Q ss_pred ccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeec
Q 011596 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVN 353 (482)
Q Consensus 298 ~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n 353 (482)
..||.=++-.-.-+.+-|+-+|+|.+++-|.|.--.....+.|+ -+|+...++..
T Consensus 506 NsLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD-~lVGF~pR~H~ 560 (691)
T KOG1022|consen 506 NSLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPD-RLVGFVPRFHV 560 (691)
T ss_pred hhhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCcc-ceeccCcceee
Confidence 33454444222456889999999999999999888888888787 45555544443
No 132
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=82.13 E-value=12 Score=39.12 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=60.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+ ...+..+++++.+.... ++ +|+-....+...+.+. +.++.++. .....| .+.++..++.
T Consensus 22 l~~i~g-kpli~~~l~~l~~~g~~--~i--iiv~~~~~~~i~~~~~-------~~~i~~~~--~~~~~G-~~~ai~~a~~ 86 (451)
T TIGR01173 22 LHPLAG-KPMLEHVIDAARALGPQ--KI--HVVYGHGAEQVRKALA-------NRDVNWVL--QAEQLG-TGHAVLQALP 86 (451)
T ss_pred hceeCC-ccHHHHHHHHHHhCCCC--eE--EEEECCCHHHHHHHhc-------CCCcEEEE--cCCCCc-hHHHHHHHHH
Confidence 344444 47888899988876542 33 3333323333333222 23455432 222333 6667777776
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEe
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQ 346 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~ 346 (482)
. ..+.|.++++++|. .++++.+++++..+.+ ....++.
T Consensus 87 ~--l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~-~~~~~~~ 125 (451)
T TIGR01173 87 F--LPDDGDVLVLYGDVPLISAETLERLLEAHRQ-NGITLLT 125 (451)
T ss_pred h--cCCCCcEEEEECCcCCcCHHHHHHHHHHHhh-CCEEEEE
Confidence 4 23447899999998 6789999999988865 3444443
No 133
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=81.28 E-value=13 Score=35.69 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=59.2
Q ss_pred EeecCCchHHHHHHHHHHHhC-CCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNL-DWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM 304 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q-~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al 304 (482)
.+|..+. ..|...|+++.+. ... + |+|+-....+...+.+.... ...++.+.+.......| -++++..+.
T Consensus 25 llpv~g~-plI~~~l~~l~~~~gi~--~--i~iv~~~~~~~i~~~l~~~~---~~~~~~i~~~~~~~~~G-t~~al~~a~ 95 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKVPDLK--E--VLLIGFYPESVFSDFISDAQ---QEFNVPIRYLQEYKPLG-TAGGLYHFR 95 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhcCCCc--E--EEEEecCCHHHHHHHHHhcc---cccCceEEEecCCccCC-cHHHHHHHH
Confidence 4566666 7889999998874 432 2 34444334444444333211 12355665544333344 566666665
Q ss_pred hhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 305 NCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 305 ~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
........+.++++.+|...+.+ +..++.....
T Consensus 96 ~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~ 128 (257)
T cd06428 96 DQILAGNPSAFFVLNADVCCDFP-LQELLEFHKK 128 (257)
T ss_pred HHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHH
Confidence 53211234678889999987654 7788876654
No 134
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=80.88 E-value=20 Score=32.69 Aligned_cols=86 Identities=17% Similarity=0.165 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCce
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYE 313 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d 313 (482)
..+..+++.+..... ++ |+|+.+. +...+.+. ..++.++. .. .. +....+..|++.. ..+++
T Consensus 31 ~ll~~~l~~l~~~~~--~~--vvvv~~~--~~~~~~~~-------~~~v~~i~--~~-~~-G~~~si~~al~~~-~~~~~ 92 (195)
T TIGR03552 31 AMLRDVITALRGAGA--GA--VLVVSPD--PALLEAAR-------NLGAPVLR--DP-GP-GLNNALNAALAEA-REPGG 92 (195)
T ss_pred HHHHHHHHHHHhcCC--CC--EEEECCC--HHHHHHHH-------hcCCEEEe--cC-CC-CHHHHHHHHHHHh-hccCC
Confidence 356666666655432 23 4445442 22222221 34566542 22 22 3677777777742 23457
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHhh
Q 011596 314 FVAIFDADF-QPNPDFLRRTVPHFK 337 (482)
Q Consensus 314 ~Vl~lDaD~-~~~pd~L~~lv~~f~ 337 (482)
.++++-+|+ .++++.+++++..++
T Consensus 93 ~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 93 AVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 999999998 569999999999886
No 135
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=80.78 E-value=15 Score=33.04 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....++.+++.+... . ++ |+|+-+..... .. ..+++++.- +....|...++..|++. .
T Consensus 24 ~g~~ll~~~i~~l~~~-~--~~--iivv~~~~~~~----~~-------~~~~~~v~~--~~~~~G~~~si~~~l~~---~ 82 (181)
T cd02503 24 GGKPLLEHVLERLKPL-V--DE--VVISANRDQER----YA-------LLGVPVIPD--EPPGKGPLAGILAALRA---A 82 (181)
T ss_pred CCEEHHHHHHHHHHhh-c--CE--EEEECCCChHH----Hh-------hcCCcEeeC--CCCCCCCHHHHHHHHHh---c
Confidence 3456777888877654 2 23 44443322222 11 335555432 22222366788888883 4
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHh
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHF 336 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f 336 (482)
+.|.++++.+|. .++++.++.++..+
T Consensus 83 ~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 83 PADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 579999999999 56999999999887
No 136
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=80.74 E-value=19 Score=33.42 Aligned_cols=97 Identities=11% Similarity=0.172 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc---CCCCCccccHHHHhhhc
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LRDGYKAGNLKSAMNCS 307 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~---~~~g~Ka~aln~al~~~ 307 (482)
+....+..+++.+.+..... + |+|+-| ++...+.++ ..++.+.+...+ ....+....+..+++..
T Consensus 24 ~Gkpll~~~l~~l~~~~~~~-~--IvV~~~--~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l 91 (223)
T cd02513 24 GGKPLIAWTIEAALESKLFD-R--VVVSTD--DEEIAEVAR-------KYGAEVPFLRPAELATDTASSIDVILHALDQL 91 (223)
T ss_pred CCccHHHHHHHHHHhCCCCC-E--EEEECC--cHHHHHHHH-------HhCCCceeeCChHHCCCCCCcHHHHHHHHHHH
Confidence 44567888888888654322 2 444432 233333222 233422222111 11113455666677632
Q ss_pred cc--CCceEEEEEcCCC-CCChHHHHHHHHHhhcC
Q 011596 308 YV--KDYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 308 ~~--a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~ 339 (482)
.. .+.|+++++++|. .++++.+++++..+..+
T Consensus 92 ~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~ 126 (223)
T cd02513 92 EELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE 126 (223)
T ss_pred HHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence 11 1358999999999 56999999999988753
No 137
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=80.67 E-value=26 Score=35.69 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=101.2
Q ss_pred CeEEEEeecCCchHHHHHHHHHH-HhCCC-CCCceEEEE-EcCCC-CHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCc
Q 011596 221 PMVLVQIPMCNEKEVYQQSIAAV-CNLDW-PKSKILIQV-LDDSD-DPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK 296 (482)
Q Consensus 221 P~VsViIP~yne~~~l~~tL~Sl-l~q~y-p~~~~~IiV-vDdss-dd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~K 296 (482)
|.+-++|.+.-+.-.-++.++.- .++.. .+.++.++. +--.+ .+.....+.++.+.|.+- +..-+...-.+--.|
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDI-i~~df~Dty~nltlK 173 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDI-IQVDFEDTYFNLTLK 173 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCE-EEEecccchhchHHH
Confidence 56777777776653333333221 11111 122233332 22223 333344555555544321 111222222222334
Q ss_pred ccc-HHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeec-CCCChHHHHHhhhhhhhhhhh
Q 011596 297 AGN-LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVN-KDENLLTRLQDINLSFHFEVE 374 (482)
Q Consensus 297 a~a-ln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~ 374 (482)
.-+ +..+-.. ..+.+||+-+|+|+.+.++-|.+.+..-. +|.-....|...... ...+--.+|.-- ..
T Consensus 174 tl~~l~w~~~~--cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~~~~~G~v~~~~~p~R~~~~KwyVp-------~~ 243 (349)
T KOG2287|consen 174 TLAILLWGVSK--CPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSSDLYYGRVIQNAPPIRDKTSKWYVP-------ES 243 (349)
T ss_pred HHHHHHHHHhc--CCcceEEEeccCceEEcHHHHHHHHhccC-CCCcceEEEeecccCCCCCCCCCCCccC-------HH
Confidence 322 2333321 35789999999999999988888777664 466667777643321 100111111000 00
Q ss_pred hhhccccccccccccceEeeeHHHHHHcC---CCCCCCchhHHHHHHHHHHC-CCcEEEecc
Q 011596 375 QQVNGVFINFFGFNGTAGVWRIKALEDSG---GWMERTTVEDMDIAVRAHLR-GWKFIFLND 432 (482)
Q Consensus 375 ~~~~~~~~~~~~~~G~~~~~Rr~~l~~iG---gf~~~~~~ED~~l~~rl~~~-G~ki~~~~~ 432 (482)
.........+ ++|.+.++.+++.+.+- +.....-.||..++.-+... |.+-...+.
T Consensus 244 ~y~~~~YP~Y--~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 244 EYPCSVYPPY--ASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred HCCCCCCCCc--CCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 0001111111 68999999999888763 22222446999999999987 766655554
No 138
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.61 E-value=21 Score=37.97 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=58.3
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+.+ .++.+++++.+.... ++.| ++-. ..+...+.+. .....+.+.......| .++++..|++
T Consensus 26 llpi~gkp-li~~~l~~l~~~g~~--~iiv-vv~~-~~~~i~~~~~-------~~~~~~~~~~~~~~~G-t~~si~~al~ 92 (482)
T PRK14352 26 LHTLAGRS-MLGHVLHAAAGLAPQ--HLVV-VVGH-DRERVAPAVA-------ELAPEVDIAVQDEQPG-TGHAVQCALE 92 (482)
T ss_pred eceeCCcc-HHHHHHHHHHhcCCC--cEEE-EECC-CHHHHHHHhh-------ccCCccEEEeCCCCCC-cHHHHHHHHH
Confidence 44555544 899999998876532 3333 3332 2233333222 1111222222222333 5677877877
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
.......+.++++++|. .++++.+++++..+..++
T Consensus 93 ~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~ 128 (482)
T PRK14352 93 ALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEG 128 (482)
T ss_pred HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcC
Confidence 43111247899999998 678999999998876533
No 139
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=80.04 E-value=34 Score=33.64 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=58.8
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc---CCCCC---
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI---LRDGY--- 295 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~---~~~g~--- 295 (482)
+++|+....|-...+..++.|++.-. ...+.+.|++|+.+.+..+.+.+..+ ..+..+....-. ..-..
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~--~~~~~fhii~d~~s~~~~~~l~~~~~---~~~~~i~f~~i~~~~~~~~~~~~ 76 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYR--RNPLHFHLITDEIARRILATLFQTWM---VPAVEVSFYNAEELKSRVSWIPN 76 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcC--CCCEEEEEEECCcCHHHHHHHHHhcc---ccCcEEEEEEhHHhhhhhccCcc
Confidence 47788888555688899999998743 33467777877655544343333322 334555544321 11000
Q ss_pred ccccHHHH-----hhhcccCCceEEEEEcCCCCCChHHHHHHHHH
Q 011596 296 KAGNLKSA-----MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (482)
Q Consensus 296 Ka~aln~a-----l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (482)
....-.++ +......+.|-|+.+|+|.++..| |.++...
T Consensus 77 ~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~ 120 (280)
T cd06431 77 KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKI 120 (280)
T ss_pred cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHH
Confidence 00111111 111122368999999999988543 4444443
No 140
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=79.24 E-value=8 Score=36.34 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=53.8
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|.-+ ...+..++.++.+.... ++ +|+-+...+...+.+. .. .++.+++.+.....| .+.++..+...
T Consensus 24 ~~~~g-~~li~~~l~~l~~~gi~--~i--~vv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~g-~~~s~~~~~~~ 91 (229)
T cd02523 24 LEING-KPLLERQIETLKEAGID--DI--VIVTGYKKEQIEELLK----KY--PNIKFVYNPDYAETN-NIYSLYLARDF 91 (229)
T ss_pred eeECC-EEHHHHHHHHHHHCCCc--eE--EEEeccCHHHHHHHHh----cc--CCeEEEeCcchhhhC-cHHHHHHHHHH
Confidence 34444 47889999998886543 33 3343333333333222 11 355555432222333 66777777764
Q ss_pred cccCCceEEEEEcCCCCCChHHHHHHHH
Q 011596 307 SYVKDYEFVAIFDADFQPNPDFLRRTVP 334 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~ 334 (482)
. .+.++++++|...+++.++.+..
T Consensus 92 ~----~~~~lv~~~D~~~~~~~~~~~~~ 115 (229)
T cd02523 92 L----DEDFLLLEGDVVFDPSILERLLS 115 (229)
T ss_pred c----CCCEEEEeCCEecCHHHHHHHHc
Confidence 2 47789999999998887776653
No 141
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=79.21 E-value=4.2 Score=38.55 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHhCCCCCCceEEEEEc-CCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 232 EKEVYQQSIAAVCNLDWPKSKILIQVLD-DSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 232 e~~~l~~tL~Sll~q~yp~~~~~IiVvD-dssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
..+.+.++++++.+..-. + ++||- .--.+- ++++..+++ ...++++.+....++ -...+-.|.+. .
T Consensus 30 gr~ii~~~i~~L~~~gi~--e--~vvV~~g~~~~l----ve~~l~~~~-~~~~iv~N~~y~ktN-~~~Sl~~akd~---~ 96 (239)
T COG1213 30 GREIIYRTIENLAKAGIT--E--FVVVTNGYRADL----VEEFLKKYP-FNAKIVINSDYEKTN-TGYSLLLAKDY---M 96 (239)
T ss_pred CeEeHHHHHHHHHHcCCc--e--EEEEeccchHHH----HHHHHhcCC-cceEEEeCCCcccCC-ceeEEeeehhh---h
Confidence 346899999999987643 2 44454 433333 344444443 134445433332222 12234444442 3
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEe
Q 011596 311 DYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQ 346 (482)
Q Consensus 311 ~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~ 346 (482)
+++ ++++|+|++.+|+++++++..= .+.+.+..
T Consensus 97 ~~~-fii~~sD~vye~~~~e~l~~a~--~~~li~d~ 129 (239)
T COG1213 97 DGR-FILVMSDHVYEPSILERLLEAP--GEGLIVDR 129 (239)
T ss_pred cCc-EEEEeCCEeecHHHHHHHHhCc--CCcEEEec
Confidence 444 8889999999999999999864 24444443
No 142
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=78.99 E-value=23 Score=33.45 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=51.6
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCC-CHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhccc
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSD-DPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYV 309 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdss-dd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~ 309 (482)
+....++.+++.+.+..... ++ ++++++.. ++...+.+. ..++.++.. +. .+... ....+++ .
T Consensus 22 ~Gkpli~~~i~~l~~~~~~~-~i-vVv~~~~~~~~~i~~~~~-------~~~v~~v~~--~~-~~~l~-~~~~~~~---~ 85 (233)
T cd02518 22 GGKPLLEHLLDRLKRSKLID-EI-VIATSTNEEDDPLEALAK-------KLGVKVFRG--SE-EDVLG-RYYQAAE---E 85 (233)
T ss_pred CCccHHHHHHHHHHhCCCCC-eE-EEECCCCcccHHHHHHHH-------HcCCeEEEC--Cc-hhHHH-HHHHHHH---H
Confidence 34568888898888754222 32 33333332 133333222 345655422 11 11111 1122333 2
Q ss_pred CCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 310 KDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 310 a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
.+.|+++++++|+ .++++.+++++..+..
T Consensus 86 ~~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 86 YNADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 4678999999999 5699999999998865
No 143
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=78.42 E-value=17 Score=33.79 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=55.9
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+....... ++ ++|+++.. .... ... ..+ .....+... . .+.+ ...++..|++.....
T Consensus 26 ~Gkpll~~~i~~l~~~~~~~-~i-vVv~~~~~-~~~~---~~~-~~~-~~~~~~~~~-~-~~~~-~~~si~~al~~~~~~ 94 (218)
T cd02516 26 GGKPVLEHTLEAFLAHPAID-EI-VVVVPPDD-IDLA---KEL-AKY-GLSKVVKIV-E-GGAT-RQDSVLNGLKALPDA 94 (218)
T ss_pred CCeEHHHHHHHHHhcCCCCC-EE-EEEeChhH-HHHH---HHH-Hhc-ccCCCeEEE-C-CchH-HHHHHHHHHHhcccC
Confidence 45578889999888654222 33 33343322 2221 111 111 111122222 1 1222 456678888742113
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~ 341 (482)
+.|+++++++|. .++++.+++++..+..++.
T Consensus 95 ~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (218)
T cd02516 95 DPDIVLIHDAARPFVSPELIDRLIDALKEYGA 126 (218)
T ss_pred CCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence 678999999998 5699999999998875443
No 144
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=76.98 E-value=16 Score=33.03 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+... -++ |+|+-+..... ... . ..+++++.-..+... +..+++..|++. .
T Consensus 25 ~g~pll~~~l~~l~~~---~~~--ivv~~~~~~~~---~~~---~---~~~~~~i~~~~~~~~-g~~~si~~al~~---~ 86 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ---VSD--LAISANRNPER---YAQ---A---GFGLPVVPDALADFP-GPLAGILAGLRW---A 86 (186)
T ss_pred CCEEHHHHHHHHHHhh---CCE--EEEEcCCCHHH---Hhh---c---cCCCcEEecCCCCCC-CCHHHHHHHHHh---c
Confidence 3456777888877542 223 44443322211 111 0 234454422112223 366778888873 4
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
+.|+++++++|. .++++.+++++..+..
T Consensus 87 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 87 GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 678999999998 7799999999998864
No 145
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=76.65 E-value=37 Score=32.42 Aligned_cols=114 Identities=14% Similarity=-0.026 Sum_probs=58.4
Q ss_pred EEeecCC--chHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc--CCCC----Cc
Q 011596 225 VQIPMCN--EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI--LRDG----YK 296 (482)
Q Consensus 225 ViIP~yn--e~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~--~~~g----~K 296 (482)
|++.+-+ -...+.-++.|++..+-. .+.++|++|+-.++..+.+++..+. .+..+...+.. .... .+
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 77 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKL---YNFNYELIPVDILDSVDSEHLKR 77 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhc---cCceEEEEeccccCcchhhhhcC
Confidence 3444444 348888899999975432 4667777776555555656554432 23333322221 1100 01
Q ss_pred cc---cH-HHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEE
Q 011596 297 AG---NL-KSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLV 345 (482)
Q Consensus 297 a~---al-n~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V 345 (482)
.. +. ...+-.. ..+.|=|+.+|+|+++-. -+.++...-.++..+++|
T Consensus 78 ~~~~~~y~RL~i~~l-lp~~~kvlYLD~D~iv~~-di~~L~~~~l~~~~~aav 128 (246)
T cd00505 78 PIKIVTLTKLHLPNL-VPDYDKILYVDADILVLT-DIDELWDTPLGGQELAAA 128 (246)
T ss_pred ccccceeHHHHHHHH-hhccCeEEEEcCCeeecc-CHHHHhhccCCCCeEEEc
Confidence 11 11 1111111 226899999999998763 355555433223344444
No 146
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=76.60 E-value=22 Score=32.72 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=57.2
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhh----hCCCeEEEEec---cCCCCCccc
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ----EAGANIVYRHR---ILRDGYKAG 298 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~----~~~v~vv~~~~---~~~~g~Ka~ 298 (482)
++|..|....+.-+++.+.+.... + |+|+-+...+...+.+.+. ..|. ..++.+++... ++...|-++
T Consensus 23 llpv~g~~pli~~~l~~l~~~gi~--~--iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~ 97 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNSGIR--N--VGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDWYRGTAD 97 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHCCCC--E--EEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCcccCcHH
Confidence 667777646888888888876542 3 4444444444443332210 0010 11233332211 111223677
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
++..+.......+.|.++++-+|.+. +..+.+++..+.+
T Consensus 98 al~~a~~~i~~~~~~~~lv~~gD~v~-~~~~~~~l~~~~~ 136 (200)
T cd02508 98 AIYQNLDYIERSDPEYVLILSGDHIY-NMDYREMLDFHIE 136 (200)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCEEE-ecCHHHHHHHHHH
Confidence 78777764312235778899999854 4567788876654
No 147
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=75.31 E-value=25 Score=35.74 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=42.5
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHH
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE 272 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~ 272 (482)
.+.+.|+|-++|..+.++..|+|+.+...=. +..+|+.-|.-+++..++++.
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I~-~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGIE-EALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCcc-ceEEEEeccCChHHHHHHHHh
Confidence 3579999999999999999999999866544 455778888888888887764
No 148
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=74.89 E-value=8.4 Score=38.46 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=23.9
Q ss_pred HHHHhhhcccCCceEEEEEcCCCCCChH-------HHHHHHHH
Q 011596 300 LKSAMNCSYVKDYEFVAIFDADFQPNPD-------FLRRTVPH 335 (482)
Q Consensus 300 ln~al~~~~~a~~d~Vl~lDaD~~~~pd-------~L~~lv~~ 335 (482)
.+.|+- .++.+|++.+|+|+.+..| ++.+-+.-
T Consensus 85 R~fGyL---~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~N 124 (346)
T PLN03180 85 RCFGYL---VSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKN 124 (346)
T ss_pred hhhhhe---eecceEEEEECCCCCCCCCCccccccHHHHHHHh
Confidence 455654 4679999999999999766 56554443
No 149
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=74.18 E-value=38 Score=35.68 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=57.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+. ..+..+++++.+.... ++ ++++.+ ..+...+.+. +. ..+.+.......| .++++..+++
T Consensus 25 l~pi~g~-pli~~~l~~l~~~gi~--~i-iiv~~~-~~~~i~~~~~-------~~-~~i~~~~~~~~~G-t~~al~~a~~ 90 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREAGAG--RI-VLVVGH-QAEKVREHFA-------GD-GDVSFALQEEQLG-TGHAVACAAP 90 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhcCCC--eE-EEEECC-CHHHHHHHhc-------cC-CceEEEecCCCCC-HHHHHHHHHH
Confidence 4555554 6888889988876532 33 334433 2333322221 11 1333333333333 5667777776
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
.. ....|.++++++|. .+++..+++++..+..
T Consensus 91 ~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 91 AL-DGFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred Hh-hccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 42 12257899999998 6789999999988764
No 150
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=73.69 E-value=3.2 Score=35.91 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHH----hCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCC
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVC----NLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGY 295 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll----~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~ 295 (482)
.-+|.||||-+|.++.|...+..+. +|.. .+.|+|++-.++... +
T Consensus 46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~---~y~I~vieQ~~~~~F-------------------------N--- 94 (136)
T PF13733_consen 46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQL---DYRIFVIEQVDNGPF-------------------------N--- 94 (136)
T ss_dssp S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT----EEEEEEEEE-SSS-------------------------------
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcc---eEEEEEEeeccCCCC-------------------------c---
Confidence 3489999999999988877776543 3442 467888875443322 1
Q ss_pred ccccHHHHhhhcc-cCCceEEEEEcCCCCCChH
Q 011596 296 KAGNLKSAMNCSY-VKDYEFVAIFDADFQPNPD 327 (482)
Q Consensus 296 Ka~aln~al~~~~-~a~~d~Vl~lDaD~~~~pd 327 (482)
|+.-+|.|+..+. ..+.|.++|=|-|..+..+
T Consensus 95 Rg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 95 RGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 3344555555432 2368999999999887543
No 151
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=73.54 E-value=20 Score=34.88 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=65.4
Q ss_pred EEEEe-ecCC-ch--HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEec---------
Q 011596 223 VLVQI-PMCN-EK--EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHR--------- 289 (482)
Q Consensus 223 VsViI-P~yn-e~--~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~--------- 289 (482)
++|.+ |.|. |. ..+.+-|+....+. .++ +++-|.+.++.+.++++.+.+ ...++++..+.
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G--~~~--~~~Y~~~~~~~~~~vL~~Y~~---~g~v~~~~w~~~~~~~~~~~ 75 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLG--VDH--FYFYDNSSSPSVRKVLKEYER---SGYVEVIPWPLRPKFPDFPS 75 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhC--CCE--EEEEEccCCHHHHHhHHHHhh---cCeEEEEEcccccccCCccc
Confidence 44444 6666 43 37777777766664 334 556777788888888876655 33455544320
Q ss_pred --cCCCC-----CccccHHHHhhhcccCCceEEEEEcCCCCCChH----HHHHHHHHhhcCC--CeEEEe
Q 011596 290 --ILRDG-----YKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPD----FLRRTVPHFKDNE--ELGLVQ 346 (482)
Q Consensus 290 --~~~~g-----~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd----~L~~lv~~f~~~p--~v~~V~ 346 (482)
...++ +...+.+.++.+ +....+|++++|-|..+-|. ..+.+...+...+ .++.+.
T Consensus 76 ~~~~~~~~~~~~~q~~a~~DCl~r-~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~~~~~~~~ 144 (285)
T PF01697_consen 76 PFPDPNSSVERRGQIAAYNDCLLR-YRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPNISAGAYS 144 (285)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH-hhhhceEEEEeccccEEEeccccchhhHHHHHHhhccccceEEEE
Confidence 00000 123344444443 24568899999999866443 3555555555433 344444
No 152
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=73.53 E-value=32 Score=34.07 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=57.8
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|+++. ..+.-.|.++...... ++ ++|+.....+...+.+. ...+.++++.|...+...| -++++..+..
T Consensus 28 Llpv~gk-PmI~~~l~~l~~aGi~--~I-~ii~~~~~~~~~~~~l~----~g~~~g~~i~y~~q~~~~G-ta~Al~~a~~ 98 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLAGIR--DI-LIISTPQDTPRFQQLLG----DGSQWGLNLQYKVQPSPDG-LAQAFIIGEE 98 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHCCCC--EE-EEEecCCchHHHHHHHc----CccccCceeEEEECCCCCC-HHHHHHHHHH
Confidence 6788887 6888888888876542 32 22333333333333322 1123456666664544444 7888877776
Q ss_pred hcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
.. .+.++++++ +|..+....+..++.....
T Consensus 99 ~i--~~~~~~lv~-gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 99 FI--GGDDCALVL-GDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred Hh--CCCCEEEEE-CCeeeeccCHHHHHHHHHh
Confidence 42 345666666 6655544457777776643
No 153
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=73.10 E-value=31 Score=33.95 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=57.6
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|+++. ..+.-.|..+...... ++ ++|+.....+...+.+ ....+.++++.+...+...| -++++..+..
T Consensus 24 Llpv~gk-PmI~~~L~~l~~aGi~--~I-~iv~~~~~~~~~~~~l----g~g~~~g~~i~~~~q~~~~G-ta~al~~a~~ 94 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLAGIR--DI-LIISTPQDTPRFQQLL----GDGSQWGVNLSYAVQPSPDG-LAQAFIIGED 94 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHCCCC--EE-EEEecCCcHHHHHHHh----ccccccCceEEEEEccCCCC-HHHHHHHHHH
Confidence 6777887 7888888888876542 23 2233223333333222 21113456777765544444 7788887777
Q ss_pred hcccCCceEEEEEcCCCCCChHHHHHHHHHhh
Q 011596 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~ 337 (482)
.. .+.++++++ +|..+.+..+..++....
T Consensus 95 ~l--~~~~~~li~-gD~i~~~~~l~~ll~~~~ 123 (286)
T TIGR01207 95 FI--GGDPSALVL-GDNIFYGHDLSDLLKRAA 123 (286)
T ss_pred Hh--CCCCEEEEE-CCEeccccCHHHHHHHHH
Confidence 52 345566665 676555556777776554
No 154
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=72.87 E-value=42 Score=31.50 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=53.5
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+. ..+..+++++.+.... + |+|+-....+...+.+++ ....++++.+.......| .++++..|..
T Consensus 25 l~~i~g~-~li~~~l~~l~~~~~~--~--i~vv~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~g-~~~sl~~a~~ 94 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREAGIE--D--IGIVVGPTGEEIKEALGD----GSRFGVRITYILQEEPLG-LAHAVLAARD 94 (236)
T ss_pred eeEECCc-chHHHHHHHHHHCCCC--E--EEEEcCCCHHHHHHHhcc----hhhcCCeEEEEECCCCCC-hHHHHHHHHH
Confidence 4444454 7888889888876432 3 334444344444443321 112345555543333333 5677777776
Q ss_pred hcccCCceEEEEEcCCCCCChHHHHHHHHHhh
Q 011596 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~ 337 (482)
.. .+.++ +++.+|...+.+.. +++..+.
T Consensus 95 ~i--~~~~~-li~~~D~~~~~~~~-~~~~~~~ 122 (236)
T cd04189 95 FL--GDEPF-VVYLGDNLIQEGIS-PLVRDFL 122 (236)
T ss_pred hc--CCCCE-EEEECCeecCcCHH-HHHHHHH
Confidence 32 23455 55788998877654 4555443
No 155
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.53 E-value=32 Score=32.18 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=52.9
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|..+. ..+..+++++.++.. .++ |+|+ . .+......+++..... ..++.+++. .....| -++++..|...
T Consensus 24 l~i~g~-pli~~~l~~l~~~g~--~~i-vvv~-~-~~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~~g-~~~~l~~a~~~ 94 (231)
T cd04183 24 IEVDGK-PMIEWVIESLAKIFD--SRF-IFIC-R-DEHNTKFHLDESLKLL-APNATVVEL-DGETLG-AACTVLLAADL 94 (231)
T ss_pred eEECCE-EHHHHHHHhhhccCC--ceE-EEEE-C-hHHhhhhhHHHHHHHh-CCCCEEEEe-CCCCCc-HHHHHHHHHhh
Confidence 455565 688889998887652 233 3333 2 2222222222222211 235665543 223333 56777777663
Q ss_pred cccCCceEEEEEcCCCCCChHHHHHHHHH
Q 011596 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPH 335 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~ 335 (482)
....+.++++++|+..+.+....+..+
T Consensus 95 --l~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 95 --IDNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred --cCCCCCEEEEecceeeccCHHHHHHHh
Confidence 223467888999999888766544433
No 156
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=71.71 E-value=44 Score=31.05 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=61.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhccc
Q 011596 230 CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYV 309 (482)
Q Consensus 230 yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~ 309 (482)
++....+..+++.+++..+. + |||+-..... +..++... +.++++++. ++...|-+..+..|++...
T Consensus 28 ~~g~plv~~~~~~a~~a~~~--~--vivV~g~~~~---~~~~a~~~---~~~~~~v~n--pd~~~Gls~Sl~ag~~a~~- 94 (199)
T COG2068 28 LDGKPLVRASAETALSAGLD--R--VIVVTGHRVA---EAVEALLA---QLGVTVVVN--PDYAQGLSTSLKAGLRAAD- 94 (199)
T ss_pred cCCCcHHHHHHHHHHhcCCC--e--EEEEeCcchh---hHHHhhhc---cCCeEEEeC--cchhhhHhHHHHHHHHhcc-
Confidence 34445777888877765542 3 6666665422 22222221 456666643 3333347788888998532
Q ss_pred CCceEEEEEcCCC-CCChHHHHHHHHHhhcC
Q 011596 310 KDYEFVAIFDADF-QPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 310 a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~ 339 (482)
..+|.++++=+|. .+.++.+.+++..+..+
T Consensus 95 ~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 95 AEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 2226999999998 58999999999999853
No 157
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=71.42 E-value=8.3 Score=36.60 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=62.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..|....+...|+.+.+.... ++ |+|+-....+...+.++ .....++++.+...+...| -++++..+..
T Consensus 24 ll~i~g~~pli~~~l~~l~~~g~~--~i-i~V~~~~~~~~i~~~~~----~~~~~~~~i~~i~~~~~~G-ta~al~~a~~ 95 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLANAGIK--EI-IVVVNGYKEEQIEEHLG----SGYKFGVKIEYIVQPEPLG-TAGALLQALD 95 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHHTTCS--EE-EEEEETTTHHHHHHHHT----TSGGGTEEEEEEEESSSSC-HHHHHHHTHH
T ss_pred cceecCCCcchhhhhhhhcccCCc--eE-EEEEeeccccccccccc----ccccccccceeeecccccc-hhHHHHHHHH
Confidence 456667767899999999886532 33 44444444444433333 2223345555554444455 7788887776
Q ss_pred hcccCC-ceEEEEEcCCCCCChHHHHHHHHHhhcCC
Q 011596 306 CSYVKD-YEFVAIFDADFQPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 306 ~~~~a~-~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p 340 (482)
...... .+.++++.+|...+. .+..++..+.+.+
T Consensus 96 ~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~ 130 (248)
T PF00483_consen 96 FIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESN 130 (248)
T ss_dssp HHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHS
T ss_pred HhhhccccceEEEEeccccccc-hhhhHHHhhhccc
Confidence 431111 346999999998887 5566666665433
No 158
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=70.95 E-value=44 Score=35.53 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=57.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|.-+. ..+..+++++.+.... ++ +|+-+...+...+.+ . ..++.++ ..+...| .++++..+++
T Consensus 29 llpi~gk-pli~~~l~~l~~~gi~--~i--vvv~~~~~~~i~~~~----~---~~~i~~v--~~~~~~G-t~~al~~~~~ 93 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDLGAR--KI--VVVTGHGAEQVEAAL----Q---GSGVAFA--RQEQQLG-TGDAFLSGAS 93 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhCCCC--eE--EEEeCCCHHHHHHHh----c---cCCcEEe--cCCCcCC-cHHHHHHHHH
Confidence 3455454 7888889888876432 33 333333333333222 1 3345443 2333334 6777777776
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
.....+.+ ++++++|. .+.+..+++++..+..++
T Consensus 94 ~l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~~ 128 (481)
T PRK14358 94 ALTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQG 128 (481)
T ss_pred HhhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhcC
Confidence 42112345 67799998 678899999998876543
No 159
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=70.49 E-value=89 Score=31.15 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=58.4
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCC--eEEEEeccCCCCCcccc
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGA--NIVYRHRILRDGYKAGN 299 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v--~vv~~~~~~~~g~Ka~a 299 (482)
+++|+..-.+ .+.+..+|.|++-.+..+-++.| +.||..++...+.+++....+ ...+ ++..+.-+. . +...
T Consensus 2 ~~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi-~~d~~~~~~~~~~l~~~~~~~-~~~i~~~i~~I~~P~-~--~~~~ 75 (304)
T cd06430 2 HLAVVACGER-LEETLTMLKSAIVFSQKPLRFHI-FAEDQLKQSFKEKLDDWPELI-DRKFNYTLHPITFPS-G--NAAE 75 (304)
T ss_pred EEEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEE-EECCccCHHHHHHHHHHHHhc-cceeeeEEEEEecCc-c--chhh
Confidence 4566666666 57778889998765533334433 345557777766565543322 1122 332222111 1 1111
Q ss_pred HHH-----Hhhhc----ccCCceEEEEEcCCCCCCh--HHHHHHHHHhhcCCCeEEEe
Q 011596 300 LKS-----AMNCS----YVKDYEFVAIFDADFQPNP--DFLRRTVPHFKDNEELGLVQ 346 (482)
Q Consensus 300 ln~-----al~~~----~~a~~d~Vl~lDaD~~~~p--d~L~~lv~~f~~~p~v~~V~ 346 (482)
+.. +..+. +..+.|-|+.+|+|+++.. +-|-.+...|. +..+.++.
T Consensus 76 ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~-~~~~aA~v 132 (304)
T cd06430 76 WKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFN-STQLAAMA 132 (304)
T ss_pred hhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcC-CCeEEEEE
Confidence 111 11111 1236789999999998743 33333333343 23355543
No 160
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=69.67 E-value=19 Score=33.80 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=46.9
Q ss_pred cCCch--HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEecc-C------CCCCcccc
Q 011596 229 MCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRI-L------RDGYKAGN 299 (482)
Q Consensus 229 ~yne~--~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~-~------~~g~Ka~a 299 (482)
+.|.. ..+.-++.|++...-.+..+.|++++|+.+++..+.+++...... .+..+..... . ....+..-
T Consensus 5 ~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T PF01501_consen 5 ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVI--EIEPIEFPDISMLEEFQFNSPSKRHF 82 (250)
T ss_dssp ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCC--TTECEEETSGGHHH--TTS-HCCTCG
T ss_pred EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhccccc--ceeeeccchHHhhhhhhhcccccccc
Confidence 44444 778888899988654324566777777666555555544322111 1211221111 0 01111111
Q ss_pred HHHHhhhc----ccCCceEEEEEcCCCCCCh
Q 011596 300 LKSAMNCS----YVKDYEFVAIFDADFQPNP 326 (482)
Q Consensus 300 ln~al~~~----~~a~~d~Vl~lDaD~~~~p 326 (482)
....+.+. ...+.|-|+++|+|+++-.
T Consensus 83 ~~~~~~rl~i~~ll~~~drilyLD~D~lv~~ 113 (250)
T PF01501_consen 83 SPATFARLFIPDLLPDYDRILYLDADTLVLG 113 (250)
T ss_dssp GGGGGGGGGHHHHSTTSSEEEEE-TTEEESS
T ss_pred cHHHHHHhhhHHHHhhcCeEEEEcCCeeeec
Confidence 11111111 1278999999999998843
No 161
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=69.48 E-value=7.4 Score=45.55 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=75.9
Q ss_pred CccccHHHHhhhcccCCceEEEEEcCC--CCCCh-HHHHHHHHHhhcCC----CeEEEeeeeeeecCCCChHHHHHhhhh
Q 011596 295 YKAGNLKSAMNCSYVKDYEFVAIFDAD--FQPNP-DFLRRTVPHFKDNE----ELGLVQARWSFVNKDENLLTRLQDINL 367 (482)
Q Consensus 295 ~Ka~aln~al~~~~~a~~d~Vl~lDaD--~~~~p-d~L~~lv~~f~~~p----~v~~V~~~~~~~n~~~~~~~~~~~~~~ 367 (482)
||..|.|+++- -.+||++-.+|++ ..++. =-++.+++.|++.. .+.+++.+.......-+.++-..+-.-
T Consensus 1051 GKpeNQNhaii---FtRGE~iQtIDmNQDnYlEE~lKmRnlL~EF~~~~~g~r~ptIlG~RE~IFt~svssLa~fms~qE 1127 (1679)
T KOG0916|consen 1051 GKPENQNHAII---FTRGEAIQTIDMNQDNYLEEALKMRNLLQEFEELHLGIRPPTILGAREHIFTGSVSSLAWFMSGQE 1127 (1679)
T ss_pred CCCcccCceee---eecchhhheecccchHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhheecCCchHHHHHHccCc
Confidence 69999999987 5799999999985 33332 22456777776533 456777776665554433332221111
Q ss_pred hhhhhhhhhhccccccccccccceEeeeHHHHHHcCCCCCC----CchhHHHHHHHHHHCCCcEEEeccce
Q 011596 368 SFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEDSGGWMER----TTVEDMDIAVRAHLRGWKFIFLNDVE 434 (482)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~~l~~iGgf~~~----~~~ED~~l~~rl~~~G~ki~~~~~~~ 434 (482)
....+..+..-+..+.+-.--|+-=++.|=....-||-+.. ++.||+.-++-...+|.++.......
T Consensus 1128 qSFvTlgqR~LA~p~~vr~HYGHPD~~drif~~TRGGvSKAsk~inlsEDIfAG~n~tlRgG~itH~EYiQ 1198 (1679)
T KOG0916|consen 1128 QSFVTLGQRTLANPGGVRLHYGHPDVFDRIFHITRGGVSKASKGINLSEDIFAGFNATLRGGNITHHEYIQ 1198 (1679)
T ss_pred cchhhHHHHHhccccceeeecCCCcHhhhhhhhccccchHhhcccccchHhhhhhhHHhhCCCcccceeee
Confidence 01111112111111111001244333444322233565332 67899999999999998888776444
No 162
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=69.23 E-value=63 Score=32.05 Aligned_cols=103 Identities=14% Similarity=0.218 Sum_probs=59.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHH---------------HHHhh---hCCCeEEEE
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEE---------------VLKWQ---EAGANIVYR 287 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~---------------~~~~~---~~~v~vv~~ 287 (482)
++|+.+.+ .|.-.++.+.+.... + |+|+-....+...+..... .+... +.++++.+.
T Consensus 28 LvpV~gkP-iI~~vl~~l~~~Gi~--~--ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 102 (297)
T TIGR01105 28 MLPIVDKP-MIQYIVDEIVAAGIK--E--IVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV 102 (297)
T ss_pred eeEECCEE-HHHHHHHHHHHCCCC--E--EEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEe
Confidence 56666765 888888888876643 3 3344443333333333210 00000 125566665
Q ss_pred eccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCCh-------HHHHHHHHHhh
Q 011596 288 HRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP-------DFLRRTVPHFK 337 (482)
Q Consensus 288 ~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~p-------d~L~~lv~~f~ 337 (482)
......| -++++..+.... .+.+++++. +|+..++ -.+.+++..+.
T Consensus 103 ~q~~~lG-tg~Av~~a~~~l--~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 103 RQAQPLG-LGHSILCARPVV--GDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred eCCCcCc-hHHHHHHHHHHh--CCCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence 5554455 778888887742 344666665 8877654 37888888765
No 163
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=69.19 E-value=88 Score=29.48 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 232 EKEVYQQSIAAVCNLDWPKSKILIQVLDD-SDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 232 e~~~l~~tL~Sll~q~yp~~~~~IiVvDd-ssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
....+..+++++.+.... + |+|+-. ...+...+.+. .....++++.+....... |-++++..+... .
T Consensus 30 ~~pli~~~l~~l~~~gi~--~--i~vv~~~~~~~~~~~~l~----~~~~~~~~i~~~~~~~~~-G~~~al~~a~~~--~- 97 (240)
T cd02538 30 DKPMIYYPLSTLMLAGIR--E--ILIISTPEDLPLFKELLG----DGSDLGIRITYAVQPKPG-GLAQAFIIGEEF--I- 97 (240)
T ss_pred CEEhHHHHHHHHHHCCCC--E--EEEEeCcchHHHHHHHHh----cccccCceEEEeeCCCCC-CHHHHHHHHHHh--c-
Confidence 356888888888876542 2 434333 22233322222 111234566554433233 366777777663 2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHhh
Q 011596 311 DYEFVAIFDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 311 ~~d~Vl~lDaD~~~~pd~L~~lv~~f~ 337 (482)
+.|-++++.+|....+..+.+++....
T Consensus 98 ~~~~~lv~~gD~~~~~~~~~~~~~~~~ 124 (240)
T cd02538 98 GDDPVCLILGDNIFYGQGLSPILQRAA 124 (240)
T ss_pred CCCCEEEEECCEEEccHHHHHHHHHHH
Confidence 234456667887665556777777654
No 164
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=69.18 E-value=1.8e+02 Score=31.72 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCC----CCHHHHHHHHHHHHHhhhCCCeEEEE
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDS----DDPTAQTLIKEEVLKWQEAGANIVYR 287 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDds----sdd~t~~~~~~~~~~~~~~~v~vv~~ 287 (482)
+.+++.+....++ +.. .++.|.. =|.+..+.+++..+++.+.++++...
T Consensus 460 ~~~~~~i~~~~~~--~~~---~~il~~~~v~~iD~ta~~al~~~~~~~~~~g~~~~i~ 512 (554)
T COG0659 460 DRLERALLGLIEE--RPE---RVILDLKSVPYIDASAAEALEDLIKELERRGIQLLIV 512 (554)
T ss_pred HHHHHHHHHHHhc--cCC---EEEEEcccCCcCChhHHHHHHHHHHHHHHcCCEEEEe
Confidence 6777777776665 222 2344443 25556677777788887888887654
No 165
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=67.97 E-value=28 Score=33.14 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCC----CCccccHHHHhhh---
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRD----GYKAGNLKSAMNC--- 306 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~----g~Ka~aln~al~~--- 306 (482)
..+..++.|++... +...+.|+|+.++-++...+.+++....+ ...+.++....+... ..+......-.+.
T Consensus 13 ~~~~~~l~Sl~~~~-~~~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~ 90 (248)
T cd04194 13 PYLAVTIKSILANN-SKRDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIP 90 (248)
T ss_pred HHHHHHHHHHHhcC-CCCceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHH
Confidence 78888899998743 32346677777776666667676665531 223333322211110 0111111111110
Q ss_pred cccCCceEEEEEcCCCCCCh
Q 011596 307 SYVKDYEFVAIFDADFQPNP 326 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~p 326 (482)
....+.|-++.+|+|+++-.
T Consensus 91 ~ll~~~~rvlylD~D~lv~~ 110 (248)
T cd04194 91 DLLPDYDKVLYLDADIIVLG 110 (248)
T ss_pred HHhcccCEEEEEeCCEEecC
Confidence 01236899999999997744
No 166
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=66.58 E-value=42 Score=28.50 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=38.1
Q ss_pred hCCCeEEEEeccCCCCCccccHHHHhhhcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeee
Q 011596 279 EAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQAR 348 (482)
Q Consensus 279 ~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~ 348 (482)
..++.+.. +..+.-+.-|+++++.. ...++-|+++.+|+ .++++.|++....++.+ ++|-|+
T Consensus 32 ~~~~~~~~----Q~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~~---d~VlgP 94 (122)
T PF09837_consen 32 PSGFSFFP----QQGGDLGERMANAFQQA-ARGYEPVVLIGSDCPDLTPDDLEQAFEALQRH---DVVLGP 94 (122)
T ss_dssp -TTSEEEE------SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--HHHHHHHHHHTTT----SEEEEE
T ss_pred CCCCEEee----cCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCCHHHHHHHHHHhccC---CEEEee
Confidence 34555542 23333555688888865 56788999999999 77999999999999753 345444
No 167
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=66.44 E-value=43 Score=30.53 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=56.1
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+...++++.+... ++ |+|+-+..++.+...++ ..... +. ...+.| -...+..|++. ..
T Consensus 25 ~GkplI~~vi~~l~~~~i--~~--I~Vv~~~~~~~~~~~l~-------~~~~~-~~--~~~g~G-~~~~l~~al~~--~~ 87 (183)
T TIGR00454 25 CGRCLIDHVLSPLLKSKV--NN--IIIATSPHTPKTEEYIN-------SAYKD-YK--NASGKG-YIEDLNECIGE--LY 87 (183)
T ss_pred CCEEHHHHHHHHHHhCCC--CE--EEEEeCCCHHHHHHHHh-------hcCcE-EE--ecCCCC-HHHHHHHHhhc--cc
Confidence 345788888888876542 23 34443434455544443 22222 21 223333 45677788873 12
Q ss_pred CceEEEEEcCCCC-CChHHHHHHHHHhhcCC
Q 011596 311 DYEFVAIFDADFQ-PNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 311 ~~d~Vl~lDaD~~-~~pd~L~~lv~~f~~~p 340 (482)
..+.++++-+|.- +.++.+..++..+...+
T Consensus 88 ~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 88 FSEPFLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 3577999999984 69999999999886533
No 168
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=66.07 E-value=67 Score=33.59 Aligned_cols=100 Identities=9% Similarity=0.132 Sum_probs=56.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+ ...++.+++++.+.... ++ ++|+- ...+...+.+. + ..++.++. .....| -+.++..+++
T Consensus 23 ll~v~g-kpli~~~l~~l~~~g~~--~i-ivvv~-~~~~~i~~~~~----~--~~~i~~v~--~~~~~G-~~~sv~~~~~ 88 (450)
T PRK14360 23 LHPLGG-KSLVERVLDSCEELKPD--RR-LVIVG-HQAEEVEQSLA----H--LPGLEFVE--QQPQLG-TGHAVQQLLP 88 (450)
T ss_pred cCEECC-hhHHHHHHHHHHhCCCC--eE-EEEEC-CCHHHHHHHhc----c--cCCeEEEE--eCCcCC-cHHHHHHHHH
Confidence 344444 48899999998876543 33 23333 23333333222 1 11344442 222233 4566666665
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
.. ....+.++++|+|. .+.++.+++++..+.+++
T Consensus 89 ~l-~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~ 123 (450)
T PRK14360 89 VL-KGFEGDLLVLNGDVPLLRPETLEALLNTHRSSN 123 (450)
T ss_pred Hh-hccCCcEEEEeCCccccCHHHHHHHHHHHHhcC
Confidence 32 12235678899998 568999999998876533
No 169
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=66.01 E-value=66 Score=33.32 Aligned_cols=116 Identities=13% Similarity=0.142 Sum_probs=64.8
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeee---ecCCCChHHHHHhhhhhhhhhhhhhhccccccccc
Q 011596 310 KDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSF---VNKDENLLTRLQDINLSFHFEVEQQVNGVFINFFG 386 (482)
Q Consensus 310 a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (482)
-+.+|++-.|+|+.+..+.|-..+..-...|. +..|.... .+.... .+..-++ +..... .... +..
T Consensus 235 ~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~r--lYiG~m~~gPvr~~~~~---ky~epe~---w~~~~~-~~~Y--Ppy 303 (408)
T PLN03193 235 WDADFYVKVDDDVHVNIATLGETLVRHRKKPR--VYIGCMKSGPVLSQKGV---RYHEPEY---WKFGEN-GNKY--FRH 303 (408)
T ss_pred CCCeEEEEcCCCceEcHHHHHHHHHhcCCCCC--EEEEecccCccccCCCC---cCcCccc---ccccCc-cccC--CCC
Confidence 47899999999999999888777754432333 33333211 111010 0111000 000000 0111 111
Q ss_pred cccceEeeeHHHHHHcCC---CCCCCchhHHHHHHHHHHCCCcEEEeccceeccc
Q 011596 387 FNGTAGVWRIKALEDSGG---WMERTTVEDMDIAVRAHLRGWKFIFLNDVECQCE 438 (482)
Q Consensus 387 ~~G~~~~~Rr~~l~~iGg---f~~~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~ 438 (482)
+.|.+.++.+++...+-. .....-.||..++.-+. |..+.+..+....+.
T Consensus 304 AsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~vG~Wl~--~L~V~~vdd~~fcc~ 356 (408)
T PLN03193 304 ATGQLYAISKDLASYISINQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRLCCG 356 (408)
T ss_pred CCcceEEehHHHHHHHHhChhhhcccCcchhhhhhHhc--cCCceeeecccccCC
Confidence 689999999999887631 11113479999998874 667778877774443
No 170
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=65.45 E-value=45 Score=33.45 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=33.8
Q ss_pred HHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc---CCCeEEEeeee
Q 011596 300 LKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD---NEELGLVQARW 349 (482)
Q Consensus 300 ln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~---~p~v~~V~~~~ 349 (482)
.|.|+. .+..+||+++|.|.++.++.-+.+...... ......|-...
T Consensus 119 RNvAr~---~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaF 168 (317)
T PF13896_consen 119 RNVARS---GARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAF 168 (317)
T ss_pred HHHHHH---hcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeee
Confidence 566777 689999999999999998877776665543 23444444443
No 171
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=65.14 E-value=12 Score=34.98 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCHH--HHHHHHHHHHHhhhCCCeEEEEeccCC------CCCc---cccHHHHhhhcc----cCCceEEEE
Q 011596 253 ILIQVLDDSDDPT--AQTLIKEEVLKWQEAGANIVYRHRILR------DGYK---AGNLKSAMNCSY----VKDYEFVAI 317 (482)
Q Consensus 253 ~~IiVvDdssdd~--t~~~~~~~~~~~~~~~v~vv~~~~~~~------~g~K---a~aln~al~~~~----~a~~d~Vl~ 317 (482)
+.-|||+|+...+ +..+++ ..|+...+.....+ ...+ ....|.|++.+. ....-+|.|
T Consensus 11 l~WIVVEd~~~~~~~v~~lL~-------~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyF 83 (207)
T PF03360_consen 11 LHWIVVEDSEETTPLVARLLR-------RSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYF 83 (207)
T ss_dssp EEEEEEESSSS--HHHHHHHH-------HHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHH-------HcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEE
Confidence 6678899975443 455555 56777665543321 1112 336788888653 234568999
Q ss_pred EcCCCCCChHHHHH
Q 011596 318 FDADFQPNPDFLRR 331 (482)
Q Consensus 318 lDaD~~~~pd~L~~ 331 (482)
.|+|...+....++
T Consensus 84 aDDdNtYdl~LF~e 97 (207)
T PF03360_consen 84 ADDDNTYDLRLFDE 97 (207)
T ss_dssp --TTSEE-HHHHHH
T ss_pred CCCCCeeeHHHHHH
Confidence 99999999877777
No 172
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=64.62 E-value=71 Score=31.23 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=63.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|+|+.+ .+.-++..+....-.+ + ++|+.....+..++++-. -.+-++++.|...+.+.| -+.|.-.|-.
T Consensus 25 LlpV~~KP-mi~y~l~~L~~aGI~d--I-~II~~~~~~~~~~~llGd----gs~~gv~itY~~Q~~p~G-lA~Av~~a~~ 95 (286)
T COG1209 25 LLPVYDKP-MIYYPLETLMLAGIRD--I-LIVVGPEDKPTFKELLGD----GSDFGVDITYAVQPEPDG-LAHAVLIAED 95 (286)
T ss_pred cceecCcc-hhHhHHHHHHHcCCce--E-EEEecCCchhhhhhhhcC----ccccCcceEEEecCCCCc-HHHHHHHHHh
Confidence 56788865 5666777777766533 3 345555555555544421 113478888887777777 6666665555
Q ss_pred hcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
+ ..+.++++++.+..... -+++.+..|.+
T Consensus 96 f--v~~~~f~l~LGDNi~~~--~l~~~~~~~~~ 124 (286)
T COG1209 96 F--VGDDDFVLYLGDNIFQD--GLSELLEHFAE 124 (286)
T ss_pred h--cCCCceEEEecCceecc--ChHHHHHHHhc
Confidence 4 56678888887666555 67777777764
No 173
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=64.15 E-value=65 Score=33.78 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCC
Q 011596 232 EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKD 311 (482)
Q Consensus 232 e~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~ 311 (482)
....++.+++++.... .+++ ++|+. ...+...+.+ .+.++++++. +...| -++++..+++.....+
T Consensus 32 gkpli~~~l~~l~~~~--~~~i-ivv~~-~~~~~i~~~~-------~~~~~~~v~~--~~~~G-t~~al~~a~~~l~~~~ 97 (456)
T PRK14356 32 GEPMLRFVYRALRPLF--GDNV-WTVVG-HRADMVRAAF-------PDEDARFVLQ--EQQLG-TGHALQCAWPSLTAAG 97 (456)
T ss_pred CCcHHHHHHHHHHhcC--CCcE-EEEEC-CCHHHHHHhc-------cccCceEEEc--CCCCC-cHHHHHHHHHHHhhcC
Confidence 4567888888876643 2233 23333 2223222211 1334554432 22333 4566777766432234
Q ss_pred ceEEEEEcCCC-CCChHHHHHHHHHhh
Q 011596 312 YEFVAIFDADF-QPNPDFLRRTVPHFK 337 (482)
Q Consensus 312 ~d~Vl~lDaD~-~~~pd~L~~lv~~f~ 337 (482)
.|+++++++|. .++++.++.++....
T Consensus 98 ~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 98 LDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 68999999999 678999999998765
No 174
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=63.19 E-value=63 Score=31.52 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=18.1
Q ss_pred cCCceEEEEEcCCCCC--ChHHHHH
Q 011596 309 VKDYEFVAIFDADFQP--NPDFLRR 331 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~--~pd~L~~ 331 (482)
....+=|+++|+|+++ +|+.+-+
T Consensus 88 ~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 88 FSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred hCCcceEEEEcCCcccccCHHHHhc
Confidence 5788999999999977 6665543
No 175
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=62.98 E-value=62 Score=30.28 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=33.2
Q ss_pred ccccHHHHhhhcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 296 KAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 296 Ka~aln~al~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
....+..|++. ..+.|+++++|+|. .++++.+++++..+..++
T Consensus 82 ~~~sv~~~l~~--~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 82 RQDSVLNGLQA--LPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred HHHHHHHHHHh--CCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 45666777763 23578999999998 579999999999887543
No 176
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.92 E-value=91 Score=33.51 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=32.2
Q ss_pred cCccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 011596 36 RNAKQLTWVLLLKAHKAAGCLTSIASAFFSLGSLVRRRVAAGRTDQPPTS 85 (482)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (482)
-...|+.|.-++..--.+=-|+.+ .++.++++++|-++.-++++.+.+
T Consensus 259 m~~~qIhWfSIiNSlvIVlfLSgi--v~mI~lRtl~rDiarYne~d~~~d 306 (628)
T KOG1278|consen 259 MEDVQIHWFSIINSLVIVLFLSGI--VAMIMLRTLYRDIARYNELDLDDD 306 (628)
T ss_pred CCCCceEEEehhhhHHHHHHHHHH--HHHHHHHHHHHhHhhhccccchhh
Confidence 456789999887765544444433 345688999999987766554433
No 177
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=61.57 E-value=74 Score=29.29 Aligned_cols=89 Identities=8% Similarity=0.070 Sum_probs=53.2
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....++.+++.+... . ++ |+|+-.. .+.. +.. .+.++.++. ......|-..++..|++. .
T Consensus 31 ~g~~ll~~~i~~l~~~-~--~~--ivvv~~~-~~~~----~~~----~~~~~~~i~--~~~~~~G~~~si~~~l~~---~ 91 (200)
T PRK02726 31 QGVPLLQRVARIAAAC-A--DE--VYIITPW-PERY----QSL----LPPGCHWLR--EPPPSQGPLVAFAQGLPQ---I 91 (200)
T ss_pred CCEeHHHHHHHHHHhh-C--CE--EEEECCC-HHHH----Hhh----ccCCCeEec--CCCCCCChHHHHHHHHHh---C
Confidence 4567888888887643 1 23 3344321 1111 111 123455442 222222355778888883 4
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
+.++++++++|. .++++.+++++..+..
T Consensus 92 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 92 KTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 569999999999 5699999999998754
No 178
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=60.98 E-value=80 Score=29.10 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=52.2
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|..|. ..+..++..+...... ++ +|+-+...+...+.+ ......++++.+.......| -++++..+.+
T Consensus 24 l~~~g~-pli~~~l~~l~~~~~~--~i--ivv~~~~~~~i~~~~----~~~~~~~~~i~~~~~~~~~g-~~~~l~~~~~- 92 (220)
T cd06426 24 LKVGGK-PILETIIDRFIAQGFR--NF--YISVNYLAEMIEDYF----GDGSKFGVNISYVREDKPLG-TAGALSLLPE- 92 (220)
T ss_pred CeECCc-chHHHHHHHHHHCCCc--EE--EEECccCHHHHHHHH----CCccccCccEEEEECCCCCc-chHHHHHHHh-
Confidence 344555 6888899988876543 33 333333333332222 11112245555543333333 4555544333
Q ss_pred cccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
...+.++++.+|...+. .+..++..+..
T Consensus 93 ---~~~~~~lv~~~D~i~~~-~~~~l~~~~~~ 120 (220)
T cd06426 93 ---KPTDPFLVMNGDILTNL-NYEHLLDFHKE 120 (220)
T ss_pred ---hCCCCEEEEcCCEeecc-CHHHHHHHHHh
Confidence 33677888899986655 46678877764
No 179
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=60.74 E-value=77 Score=29.30 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccC
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVK 310 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a 310 (482)
+....+..+++.+...... +++ ++|+++...+.....+ . .. ..+.+. ....+ ...++..|++.. .
T Consensus 25 ~gkpll~~~l~~l~~~~~~-~~i-vVv~~~~~~~~~~~~~----~---~~-~~~~~~--~~~~~-~~~sl~~~l~~~--~ 89 (217)
T TIGR00453 25 GGRPLLEHTLDAFLAHPAI-DEV-VVVVSPEDQEFFQKYL----V---AR-AVPKIV--AGGDT-RQDSVRNGLKAL--K 89 (217)
T ss_pred CCeEHHHHHHHHHhcCCCC-CEE-EEEEChHHHHHHHHHh----h---cC-CcEEEe--CCCch-HHHHHHHHHHhC--C
Confidence 4567888899988864222 233 3344332222222111 1 11 111211 11122 345677777632 2
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
+.|+++++++|. .++++.+.+++..+..++
T Consensus 90 ~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 90 DAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred CCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 578999999998 679999999999886543
No 180
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=58.56 E-value=65 Score=32.85 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=65.8
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|.-|. ..+.-.++++.++... +|+++-....+...+.+. .....++++.|.......| -++++..+...
T Consensus 27 lpI~gk-Pii~~~l~~L~~~Gv~----eivi~~~y~~~~i~~~~~----d~~~~~~~I~y~~e~~~lG-Tag~l~~a~~~ 96 (358)
T COG1208 27 LPIAGK-PLIEYVLEALAAAGVE----EIVLVVGYLGEQIEEYFG----DGEGLGVRITYVVEKEPLG-TAGALKNALDL 96 (358)
T ss_pred ceeCCc-cHHHHHHHHHHHCCCc----EEEEEeccchHHHHHHHh----cccccCCceEEEecCCcCc-cHHHHHHHHHh
Confidence 455544 4788888888887653 355553434444333332 2123467777776555566 88888888884
Q ss_pred cccCCceEEEEEcCCCCCChHHHHHHHHHhhcC
Q 011596 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~ 339 (482)
-..+-++++.+|...+-+ +..++...+++
T Consensus 97 ---l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 97 ---LGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred ---cCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 333888999999999988 99999888764
No 181
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=58.36 E-value=53 Score=32.25 Aligned_cols=206 Identities=14% Similarity=0.054 Sum_probs=100.4
Q ss_pred CCeEEEEeecCC-chHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 220 FPMVLVQIPMCN-EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 220 ~P~VsViIP~yn-e~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
.|+.-+.+|+=- ..+.+..++.-. ..++.+.++.-|+.-|+- .++ + |.+.-+.+.. .++.|=.
T Consensus 40 ~~k~Lla~~VG~kqk~~vd~~v~Kf----~~nF~i~LfhYDg~vd~w-~~~-~-----ws~~aiHv~~-----~kqtKww 103 (294)
T PF05212_consen 40 KPKYLLAMTVGIKQKDNVDAIVKKF----SDNFDIMLFHYDGRVDEW-DDF-E-----WSDRAIHVSA-----RKQTKWW 103 (294)
T ss_pred CCceEEEEEecHHHHhhhhHHHhhh----ccCceEEEEEecCCcCch-hhc-c-----cccceEEEEe-----ccceEEe
Confidence 456777777643 335555555544 234456555555544443 221 1 1122232221 1122321
Q ss_pred cHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEEeeeeeeecCCCChHHHHHhhhhhhhhh---hhh
Q 011596 299 NLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQDINLSFHFE---VEQ 375 (482)
Q Consensus 299 aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~ 375 (482)
-...-+.=...+.+|||.+.|.|..++.-.+.+.+..+++ .++.+.|.........-.+-.....-....+.. ...
T Consensus 104 ~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~-~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~~~~~ 182 (294)
T PF05212_consen 104 FAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKK-EGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTRGGPR 182 (294)
T ss_pred ehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHH-hCCcccCcccCCCCceeeeeEEeecCCceeEeccCCCCC
Confidence 1111121124688999999999999988888888888875 555666654321111000000000000000000 000
Q ss_pred -hhccccccccc-cccceEeeeHHHHHHcCCCCC----CCchhHHHHHHHHHHCCCcEEEeccceecccCCcC
Q 011596 376 -QVNGVFINFFG-FNGTAGVWRIKALEDSGGWME----RTTVEDMDIAVRAHLRGWKFIFLNDVECQCELPES 442 (482)
Q Consensus 376 -~~~~~~~~~~~-~~G~~~~~Rr~~l~~iGgf~~----~~~~ED~~l~~rl~~~G~ki~~~~~~~~~~~~p~t 442 (482)
........+.+ +-...-+|.|++++-+=.... ..-+=|+.+...+..+..++..+....+.+....|
T Consensus 183 ~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH~gvpt 255 (294)
T PF05212_consen 183 CCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVHTGVPT 255 (294)
T ss_pred cCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEeeEEEEEcCCCc
Confidence 00111111111 223345699999977532222 13356888888887778899888877755544333
No 182
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=57.27 E-value=87 Score=28.88 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhccc
Q 011596 230 CNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYV 309 (482)
Q Consensus 230 yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~ 309 (482)
.|....++..++.+..|. . .++|+-+.+.+. .. ..++.++.- ..... |--.++-.|++ .
T Consensus 26 ~~g~~lie~v~~~L~~~~----~-~vvi~~~~~~~~----~~-------~~g~~vv~D-~~~~~-GPL~Gi~~al~---~ 84 (192)
T COG0746 26 LNGRPLIEHVIDRLRPQV----D-VVVISANRNQGR----YA-------EFGLPVVPD-ELPGF-GPLAGILAALR---H 84 (192)
T ss_pred eCCeEHHHHHHHHhcccC----C-EEEEeCCCchhh----hh-------ccCCceeec-CCCCC-CCHHHHHHHHH---h
Confidence 344556666666666554 2 244444444332 11 345665522 22222 46677888888 4
Q ss_pred CCceEEEEEcCCC-CCChHHHHHHHHHhhcCC
Q 011596 310 KDYEFVAIFDADF-QPNPDFLRRTVPHFKDNE 340 (482)
Q Consensus 310 a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p 340 (482)
.++++++++=+|+ .++++.+.++.+.+..++
T Consensus 85 ~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 85 FGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 6799999999999 669999999999998655
No 183
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.22 E-value=1.3e+02 Score=31.56 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=54.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+ ...++.+++++.+... +++.+ ++- ...+... +... +.++.++. .+...| -++++..++.
T Consensus 27 l~~i~g-kpli~~~i~~l~~~gi--~~i~v-v~~-~~~~~i~----~~~~---~~~~~~i~--~~~~~G-t~~al~~a~~ 91 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANELGA--QHVHL-VYG-HGGDLLK----QTLA---DEPLNWVL--QAEQLG-TGHAMQQAAP 91 (456)
T ss_pred cceeCC-hhHHHHHHHHHHhcCC--CcEEE-EEC-CCHHHHH----Hhhc---cCCcEEEE--CCCCCC-cHHHHHHHHH
Confidence 344444 5678888888877543 23433 332 2222222 2211 23444442 233333 6677777776
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhh
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFK 337 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~ 337 (482)
. ..+.+.++++++|. .+.++.+.+++....
T Consensus 92 ~--l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~ 122 (456)
T PRK09451 92 F--FADDEDILMLYGDVPLISVETLQRLRDAKP 122 (456)
T ss_pred h--hccCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence 4 23457899999998 568888999887654
No 184
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=53.80 E-value=40 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEE
Q 011596 237 QQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYR 287 (482)
Q Consensus 237 ~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~ 287 (482)
...|+.+++ +||+.++ |+|-|+|..| .++-.+...++|+ .+..+++
T Consensus 52 ~~~i~~i~~-~fP~~kf-iLIGDsgq~D--peiY~~ia~~~P~-~i~ai~I 97 (100)
T PF09949_consen 52 RDNIERILR-DFPERKF-ILIGDSGQHD--PEIYAEIARRFPG-RILAIYI 97 (100)
T ss_pred HHHHHHHHH-HCCCCcE-EEEeeCCCcC--HHHHHHHHHHCCC-CEEEEEE
Confidence 344555554 7898776 6688887655 3444566666653 4555555
No 185
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=53.42 E-value=1.3e+02 Score=28.58 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=55.7
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEE------ecc---------
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYR------HRI--------- 290 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~------~~~--------- 290 (482)
++|..+.+ .+.-+++.+.+.... + |+|+-....+...+.+.+.... ..++++.+. ..+
T Consensus 23 llpv~~~p-~i~~~~~~~~~~gi~--~--i~iv~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (253)
T cd02524 23 MVEIGGRP-ILWHIMKIYSHYGHN--D--FILCLGYKGHVIKEYFLNYFLH--NSDVTIDLGTNRIELHNSDIEDWKVTL 95 (253)
T ss_pred EEEECCEE-HHHHHHHHHHhCCCc--e--EEEECCCCHHHHHHHHHhhhhh--cCceeEeecccceeeecccccccceee
Confidence 56666665 778888888876543 3 4444444444444444322110 112333221 011
Q ss_pred ----CCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 291 ----LRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 291 ----~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
... +.++++-.+... ..+.+.++++++|.+.+.+. ..++.....
T Consensus 96 ~~~~~~~-~t~~al~~a~~~--~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 96 VDTGLNT-MTGGRLKRVRRY--LGDDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred cccCccc-ccHHHHHHHHHh--cCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 011 245666666663 22227899999999888776 788876553
No 186
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.11 E-value=24 Score=37.50 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=63.9
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHH
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln 301 (482)
..+|++-+|..++++...++-+-...|-+ + |+||=++..+...++ .||+.|+.+.+++.++++ +|
T Consensus 650 QFTvVmLTYERe~VLm~sLeRL~gLPYLn-K--vvVVWNspk~P~ddl------~WPdigvPv~viR~~~Ns------LN 714 (907)
T KOG2264|consen 650 QFTVVMLTYEREAVLMGSLERLHGLPYLN-K--VVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAENS------LN 714 (907)
T ss_pred eEEEEEEEehHHHHHHHHHHHhhCCcccc-e--EEEEeCCCCCChhcc------cCcCCCCceEEEEccccc------cc
Confidence 58999999999999999999999888876 4 556666655444332 267888888776444332 22
Q ss_pred HH-hhhcccCCceEEEEEcCCCCCChHHHH
Q 011596 302 SA-MNCSYVKDYEFVAIFDADFQPNPDFLR 330 (482)
Q Consensus 302 ~a-l~~~~~a~~d~Vl~lDaD~~~~pd~L~ 330 (482)
.- +-. ..-..|-|+-+|+|.-+..|.+-
T Consensus 715 NRFlPw-d~IETEAvLS~DDDahLrhdEI~ 743 (907)
T KOG2264|consen 715 NRFLPW-DRIETEAVLSLDDDAHLRHDEII 743 (907)
T ss_pred ccccCc-hhhhheeeeecccchhhhhhhee
Confidence 21 111 03467899999999877665543
No 187
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=52.58 E-value=1.4e+02 Score=31.30 Aligned_cols=96 Identities=9% Similarity=0.145 Sum_probs=56.0
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|.-+. ..+..+++++.+.... ++ ++++.. ..+...+.+ ..++.++. .....| .++++..+++
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~gi~--~i-ivvv~~-~~~~i~~~~--------~~~~~~~~--~~~~~g-~~~al~~a~~ 87 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKAGID--KI-VTVVGH-GAEEVKEVL--------GDRSEFAL--QEEQLG-TGHAVMQAEE 87 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhCCCC--eE-EEEeCC-CHHHHHHHh--------cCCcEEEE--cCCCCC-HHHHHHHHHH
Confidence 3455554 7889999998875432 33 333332 223332221 12233332 222333 5566777766
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
.. ....|.++++++|. .++++.+++++..+.+
T Consensus 88 ~l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 88 FL-ADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred Hh-cccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 42 12247899999998 6789999999988754
No 188
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=51.69 E-value=1.7e+02 Score=30.59 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=56.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+. ..+..+++++.+.. +++ +|+-+...+.. ++.. ..++.++ .+....| .++++..+++
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~---~~i--~vv~~~~~~~i----~~~~----~~~~~~~--~~~~~~g-~~~ai~~a~~ 84 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA---QKV--GVVLGHEAELV----KKLL----PEWVKIF--LQEEQLG-TAHAVMCARD 84 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC---CcE--EEEeCCCHHHH----HHhc----ccccEEE--ecCCCCC-hHHHHHHHHH
Confidence 4555554 78888888888742 343 33333222222 2221 1234443 2233333 6677777776
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
. ..+.|.++++++|. .+.+..+++++..+++
T Consensus 85 ~--l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 85 F--IEPGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred h--cCcCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 4 23358999999998 5688889999988764
No 189
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=50.37 E-value=1.5e+02 Score=28.75 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=49.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
++|..+....+..+++.+....- .+++ +|+-+.. ..+.+++.... ...+++++. .+...| .++++..+..
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~~-~~~i--~vvt~~~---~~~~v~~~l~~-~~~~~~ii~--ep~~~g-Ta~ai~~a~~ 95 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLVP-PDRI--LVVTNEE---YRFLVREQLPE-GLPEENIIL--EPEGRN-TAPAIALAAL 95 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCCC-CCcE--EEEechH---HHHHHHHHHhh-cCCCceEEE--CCCCCC-cHHHHHHHHH
Confidence 45666767899999999887531 2233 3333321 11222222221 013445443 333334 5677776665
Q ss_pred hccc-CCceEEEEEcCCCCCC
Q 011596 306 CSYV-KDYEFVAIFDADFQPN 325 (482)
Q Consensus 306 ~~~~-a~~d~Vl~lDaD~~~~ 325 (482)
.... ...++++++.+|....
T Consensus 96 ~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 96 YLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHHhcCCCCeEEEecchhccc
Confidence 4211 2467999999998775
No 190
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=50.06 E-value=1.7e+02 Score=28.12 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccC--C--CCCccccHHHH---hh
Q 011596 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRIL--R--DGYKAGNLKSA---MN 305 (482)
Q Consensus 233 ~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~--~--~g~Ka~aln~a---l~ 305 (482)
...+..++.|++..+ . ..+.+.|++|+-+++..+.+++..+++. ..+.++....+. . ...+.....++ +.
T Consensus 13 ~~~~~v~l~Sll~nn-~-~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~ 89 (248)
T cd06432 13 ERFLRIMMLSVMKNT-K-SPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIWGYKILFLD 89 (248)
T ss_pred HHHHHHHHHHHHHcC-C-CCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHHHHHHHHHH
Confidence 377889999999764 2 3578889999888887787887777553 233333332111 1 00011011111 11
Q ss_pred hcccCCceEEEEEcCCCCCChHHHHHHHH
Q 011596 306 CSYVKDYEFVAIFDADFQPNPDFLRRTVP 334 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~ 334 (482)
.....+.|-|+.+|+|+++. +-|.++..
T Consensus 90 ~lLP~~vdkvLYLD~Dilv~-~dL~eL~~ 117 (248)
T cd06432 90 VLFPLNVDKVIFVDADQIVR-TDLKELMD 117 (248)
T ss_pred HhhhhccCEEEEEcCCceec-ccHHHHHh
Confidence 01234579999999999876 34555553
No 191
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=50.02 E-value=1e+02 Score=31.10 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=64.0
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCC---Cc
Q 011596 221 PMVLVQIPMCNEK-EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDG---YK 296 (482)
Q Consensus 221 P~VsViIP~yne~-~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g---~K 296 (482)
..+.|+..+=+.- ..+.-++.|++.-+ ++..+.+.|++|+-+++..+.+++..++++ ..+.+.......-.+ .+
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn-~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNN-PDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLKSLPSTK 101 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhC-CCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHhCCcccC
Confidence 4567776665443 88999999998643 334577888888777777677777666542 234444332111111 11
Q ss_pred cccHHHHhhh----cccCCceEEEEEcCCCCCChHHHHHHHH
Q 011596 297 AGNLKSAMNC----SYVKDYEFVAIFDADFQPNPDFLRRTVP 334 (482)
Q Consensus 297 a~aln~al~~----~~~a~~d~Vl~lDaD~~~~pd~L~~lv~ 334 (482)
......-++. ....+.|-|+.+|+|+++..| |.++..
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~~ 142 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELID 142 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHHh
Confidence 1112111121 122368999999999987653 444443
No 192
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=49.81 E-value=1.6e+02 Score=28.11 Aligned_cols=100 Identities=8% Similarity=0.027 Sum_probs=52.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEE-------------------
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVY------------------- 286 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~------------------- 286 (482)
++|.-+.+ .+..++.++.+.... + |+|+-....+...+.+..... . ..++++.+
T Consensus 24 llpv~g~p-ii~~~l~~l~~~gi~--~--i~iv~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (254)
T TIGR02623 24 MVEIGGKP-ILWHIMKIYSHHGIN--D--FIICCGYKGYVIKEYFANYFL-H-MSDVTFHMADNTMEVHHKRVEPWRVTL 96 (254)
T ss_pred eeEECCEE-HHHHHHHHHHHCCCC--E--EEEEcCCCHHHHHHHHHhhhh-c-ccCeeEEecccccccccccCCccceee
Confidence 45666666 888888888876432 3 444444344444443332110 0 11233322
Q ss_pred EeccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhh
Q 011596 287 RHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 287 ~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~ 337 (482)
....... +-++++..+.... +.+.++++++|.+.+.+ +.+++....
T Consensus 97 ~~~~~~~-gt~~al~~~~~~i---~~e~flv~~gD~i~~~d-l~~~~~~h~ 142 (254)
T TIGR02623 97 VDTGEST-QTGGRLKRVREYL---DDEAFCFTYGDGVADID-IKALIAFHR 142 (254)
T ss_pred eecCCcC-CcHHHHHHHHHhc---CCCeEEEEeCCeEecCC-HHHHHHHHH
Confidence 1111122 2566777776642 34567799999976554 556666544
No 193
>PRK10122 GalU regulator GalF; Provisional
Probab=49.50 E-value=2.3e+02 Score=28.04 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=58.7
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHH---------------HHH---HhhhCCCeEEEE
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE---------------EVL---KWQEAGANIVYR 287 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~---------------~~~---~~~~~~v~vv~~ 287 (482)
++|..+. ..+.-.+.++.+.... ++ +|+-....+...+.+.. ..+ .....++++.+.
T Consensus 28 llpi~gk-piI~~~l~~l~~~Gi~--~i--~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~ 102 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVAAGIK--EI--VLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV 102 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC--EE--EEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEe
Confidence 5566666 7888899999887643 33 33433333333222210 000 000134566665
Q ss_pred eccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCChH-------HHHHHHHHhhc
Q 011596 288 HRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNPD-------FLRRTVPHFKD 338 (482)
Q Consensus 288 ~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd-------~L~~lv~~f~~ 338 (482)
......| -++++..+.... .+.+++++. +|+..+++ .+.+++..+..
T Consensus 103 ~q~~~lG-tg~al~~a~~~l--~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 103 RQGQPLG-LGHSILCARPAI--GDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred ecCCcCc-hHHHHHHHHHHc--CCCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 4544445 678888777752 345677666 77777543 57888876654
No 194
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=48.96 E-value=1e+02 Score=29.57 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=56.6
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHH------HHHHhh-----------hCCCeEEEEe
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE------EVLKWQ-----------EAGANIVYRH 288 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~------~~~~~~-----------~~~v~vv~~~ 288 (482)
.+|..+. ..+..+++++.+.... ++ +|+-+.......+.+.. ...+.. ..+.++.+..
T Consensus 25 llpv~gk-pli~~~l~~l~~~gi~--~i--~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAAGIE--DI--IIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVR 99 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC--EE--EEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEE
Confidence 4566665 7888899998886543 33 33333322323222211 000000 0134555543
Q ss_pred ccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCCh-H-HHHHHHHHhhc
Q 011596 289 RILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP-D-FLRRTVPHFKD 338 (482)
Q Consensus 289 ~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~p-d-~L~~lv~~f~~ 338 (482)
.....| -++++..+.... +.+-++++.+|..... + .+.+++..+..
T Consensus 100 ~~~~~G-t~~al~~~~~~i---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 100 QKEPLG-LGHAVLCAKPFI---GDEPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred cCCCCC-hHHHHHHHHHHh---CCCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 333344 678888887742 2355677778886654 3 68899887754
No 195
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=48.69 E-value=1.5e+02 Score=28.16 Aligned_cols=106 Identities=14% Similarity=0.203 Sum_probs=65.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhh
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMN 305 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~ 305 (482)
+.|.-.+ ..|..+|+.+....+-+ ++.|--.|+..|+...+.+. ..|+.++ .|.-..-+..-+.
T Consensus 22 LlpL~~~-pmI~~~lervrks~~~d-~ivvATS~~~~d~~l~~~~~-------~~G~~vf-------rGs~~dVL~Rf~~ 85 (241)
T COG1861 22 LLPLGGE-PMIEYQLERVRKSKDLD-KIVVATSDKEEDDALEEVCR-------SHGFYVF-------RGSEEDVLQRFII 85 (241)
T ss_pred hhhcCCC-chHHHHHHHHhcccccc-ceEEEecCCcchhHHHHHHH-------HcCeeEe-------cCCHHHHHHHHHH
Confidence 3444433 46777888888766544 55444555566666666555 5677665 2223333444333
Q ss_pred hcccCCceEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeee
Q 011596 306 CSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQAR 348 (482)
Q Consensus 306 ~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~ 348 (482)
++..-+++.|+-+-+|+ .++|+.+..++..+.+ .+.+.+...
T Consensus 86 a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~-~gaDY~s~~ 128 (241)
T COG1861 86 AIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLE-KGADYVSNT 128 (241)
T ss_pred HHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHh-cCCcccccc
Confidence 33356778999999999 5699999998877664 333444443
No 196
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=48.49 E-value=1.5e+02 Score=29.80 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=37.1
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHH
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKE 272 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~ 272 (482)
++.+++-++|.+++++-+++|+.+..--.+. .+|+.-|+--.++.++++.
T Consensus 118 ~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~t-LlifSHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 118 RVVLVLQVHNRPQYLRVLVESLRKVKGISET-LLIFSHDGYFEEINRIIES 167 (455)
T ss_pred eEEEEEEEcCcHHHHHHHHHHHHhccCccce-EEEEeccchHHHHHHHHhh
Confidence 6888999999999999999999974433333 4567777766666666653
No 197
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=46.45 E-value=1.8e+02 Score=27.97 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCce
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYE 313 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d 313 (482)
..+..+++.+.+.... +++ ++|+.+...+.. ++..+. .+..+.+. ..+.+ ....+..|++.. ..+.+
T Consensus 53 pll~~tl~~~~~~~~i-~~I-vVV~~~~~~~~~----~~~~~~---~~~~i~~v--~gg~~-r~~SV~~gl~~l-~~~~~ 119 (252)
T PLN02728 53 PIALYSLYTFARMPEV-KEI-VVVCDPSYRDVF----EEAVEN---IDVPLKFA--LPGKE-RQDSVFNGLQEV-DANSE 119 (252)
T ss_pred EHHHHHHHHHHhCCCC-CeE-EEEeCHHHHHHH----HHHHHh---cCCceEEc--CCCCc-hHHHHHHHHHhc-cCCCC
Confidence 5777888887764211 233 334432222222 222222 23333322 11222 344566677642 23568
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHhhcC
Q 011596 314 FVAIFDADF-QPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 314 ~Vl~lDaD~-~~~pd~L~~lv~~f~~~ 339 (482)
+|++.|+|. .++++.+.+++.....+
T Consensus 120 ~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 120 LVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred EEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 999999986 66999999999888754
No 198
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=46.38 E-value=1.8e+02 Score=26.87 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=51.5
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhh---hCCCeEEEEeccCCCCCccccHHH
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ---EAGANIVYRHRILRDGYKAGNLKS 302 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~---~~~v~vv~~~~~~~~g~Ka~aln~ 302 (482)
++|.-|. ..+..+++.+.+.... ++ ++|+.....+... +....+. ..+..+++.......| -++++..
T Consensus 25 Llpv~g~-pli~~~l~~l~~~g~~--~i-ivv~~~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~g-t~~al~~ 95 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKAGFE--DV-IVVVPEEEQAEIS----TYLRSFPLNLKQKLDEVTIVLDEDMG-TADSLRH 95 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHCCCC--eE-EEEECHHHHHHHH----HHHHhcccccCcceeEEEecCCCCcC-hHHHHHH
Confidence 4555565 7888888888875432 33 3333322222233 3222221 1123333332333333 6677777
Q ss_pred HhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcC
Q 011596 303 AMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 303 al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~ 339 (482)
+... -+.+ ++++.+|.+.+. -+..++..+..+
T Consensus 96 ~~~~---i~~d-~lv~~~D~i~~~-~l~~~l~~h~~~ 127 (214)
T cd04198 96 IRKK---IKKD-FLVLSCDLITDL-PLIELVDLHRSH 127 (214)
T ss_pred HHhh---cCCC-EEEEeCcccccc-CHHHHHHHHhcc
Confidence 7663 2334 778888966544 456777666543
No 199
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=46.10 E-value=2.1e+02 Score=26.47 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=52.2
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhC--CCeEEEEeccCCCCCccccHHHH
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEA--GANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~--~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
++|..|. ..+.-.++++.+.... + |+|+-+...+...+.+.+... +... +..+.+...+...| -++++...
T Consensus 25 llpi~g~-piI~~~l~~l~~~Gi~--~--I~iv~~~~~~~i~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~al~~~ 97 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALNGVE--E--VFVFCCSHSDQIKEYIEKSKW-SKPKSSLMIVIIIMSEDCRS-LGDALRDL 97 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHCCCC--e--EEEEeCCCHHHHHHHHhhccc-cccccCcceEEEEeCCCcCc-cchHHHHH
Confidence 5667777 5899999999987643 3 334444444555444432111 1000 13344443322222 33444322
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
.... .- .+.++++.+|.+.+.+ +..++..+.+
T Consensus 98 ~~~~-~~-~~~flv~~gD~i~~~d-l~~~l~~h~~ 129 (217)
T cd04197 98 DAKG-LI-RGDFILVSGDVVSNID-LKEILEEHKE 129 (217)
T ss_pred hhcc-cc-CCCEEEEeCCeeeccC-HHHHHHHHHH
Confidence 1110 11 2446689999887654 5566766654
No 200
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=45.37 E-value=98 Score=28.52 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCc
Q 011596 233 KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (482)
Q Consensus 233 ~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~ 312 (482)
...+..+++.+++..+.+ + |+|.- +++...++++ +.++.+..++.....+ . .....++........
T Consensus 24 kpLi~~~i~~a~~s~~~d-~--IvVaT--d~~~i~~~~~-------~~g~~v~~~~~~~~~~-~-~r~~~~~~~~~~~~~ 89 (217)
T PF02348_consen 24 KPLIEYVIERAKQSKLID-E--IVVAT--DDEEIDDIAE-------EYGAKVIFRRGSLADD-T-DRFIEAIKHFLADDE 89 (217)
T ss_dssp EEHHHHHHHHHHHTTTTS-E--EEEEE--SSHHHHHHHH-------HTTSEEEE--TTSSSH-H-HHHHHHHHHHTCSTT
T ss_pred ccHHHHHHHHHHhCCCCC-e--EEEeC--CCHHHHHHHH-------HcCCeeEEcChhhcCC-c-ccHHHHHHHhhhhHH
Confidence 468899999999877654 3 43333 3344444444 4557766553322222 1 222333332211245
Q ss_pred eEEEEEcCCC-CCChHHHHHHHHHhhcCCC
Q 011596 313 EFVAIFDADF-QPNPDFLRRTVPHFKDNEE 341 (482)
Q Consensus 313 d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~ 341 (482)
++++.+.+|+ .++|..+.+++..+.++..
T Consensus 90 ~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 90 DIVVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp SEEEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred hhccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 5999999998 5599999999999987554
No 201
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=42.69 E-value=1.5e+02 Score=30.30 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=32.9
Q ss_pred CccccHHHHhhhcccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 295 YKAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 295 ~Ka~aln~al~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
+..+.+..|++. .+.|+++++++|. .++++.+++++..+..
T Consensus 79 G~~~si~~gl~~---~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 79 GPLSGILAGLEH---ADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred ChHHHHHHHHHh---cCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 355667788873 4678999999997 6799999999998754
No 202
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=40.54 E-value=2.2e+02 Score=27.09 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHH---------------HHhh--hCCCeEEEEe
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEV---------------LKWQ--EAGANIVYRH 288 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~---------------~~~~--~~~v~vv~~~ 288 (482)
++|.-+. ..+.-++.++.+.... + |+|+-........+.+.... .... ....++.+..
T Consensus 25 llpi~g~-pli~~~l~~l~~~gi~--~--v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (260)
T TIGR01099 25 MLPIVDK-PLIQYVVEEAVEAGIE--D--ILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVR 99 (260)
T ss_pred eEEECCE-EHHHHHHHHHHhCCCC--E--EEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEe
Confidence 4566665 7888888888876532 3 44444433333333222100 0000 0123444443
Q ss_pred ccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCCh--HHHHHHHHHhhc
Q 011596 289 RILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPNP--DFLRRTVPHFKD 338 (482)
Q Consensus 289 ~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~p--d~L~~lv~~f~~ 338 (482)
.....| -++++..+... . +.+-++++-+|..... ..+.+++..+.+
T Consensus 100 ~~~~~G-~~~al~~~~~~--~-~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (260)
T TIGR01099 100 QKEQKG-LGHAVLCAEPF--V-GDEPFAVILGDDIVVSEEPALKQMIDLYEK 147 (260)
T ss_pred cCCCCC-HHHHHHHHHHh--h-CCCCEEEEeccceecCCcHHHHHHHHHHHH
Confidence 333334 67777777764 2 3345666777776654 378888887764
No 203
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=38.96 E-value=1.4e+02 Score=31.00 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=57.3
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEec---cCC-----CCCcc
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHR---ILR-----DGYKA 297 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~---~~~-----~g~Ka 297 (482)
++|.-|....|.-.|+++.+....+ |+|+-....+...+.+. ..|...+....+... ... ..+-+
T Consensus 30 llPv~gk~plI~~~L~~l~~~Gi~~----i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta 102 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVNSGYLR----IYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKRWYLGSA 102 (407)
T ss_pred ceeeCCcceEhHHHHHHHHHCCCCE----EEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCCcccCCH
Confidence 5566676568888889888876432 44554555555544443 112111221112211 111 12366
Q ss_pred ccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 298 ~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
+++..+.........|+++++.+|.+.+. .+.+++.....
T Consensus 103 ~al~~a~~~i~~~~~~~~lv~~gD~v~~~-dl~~l~~~h~~ 142 (407)
T PRK00844 103 DAIYQSLNLIEDEDPDYVVVFGADHVYRM-DPRQMVDFHIE 142 (407)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHh
Confidence 77777766432223478999999987654 45666665543
No 204
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=38.86 E-value=2.5e+02 Score=25.01 Aligned_cols=43 Identities=2% Similarity=-0.017 Sum_probs=30.9
Q ss_pred ccccHHHHhhhcccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 296 KAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 296 Ka~aln~al~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
...++..|++.....+.|+++++=+|+ .++++.+++++..+..
T Consensus 59 pl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 59 PLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 445555556532124679999999999 5699999999987754
No 205
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=38.30 E-value=2e+02 Score=29.70 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=30.9
Q ss_pred ccccHHHHhhhcccCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 296 KAGNLKSAMNCSYVKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 296 Ka~aln~al~~~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
....+..|++. .+.|+|++.|+|. .++++.+++++..+..
T Consensus 83 r~~SV~~gL~~---l~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 83 RQESVRNALEA---LDSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred HHHHHHHHHHh---cCCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 34557777773 2459999999997 6689999999998764
No 206
>COG3181 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.27 E-value=2.1e+02 Score=28.79 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=58.5
Q ss_pred eEEEEeecCCch--HHHHHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHhhhCCCeEEEEeccCC------
Q 011596 222 MVLVQIPMCNEK--EVYQQSIAAVCNLDWPKSKILIQVLDD-SDDPTAQTLIKEEVLKWQEAGANIVYRHRILR------ 292 (482)
Q Consensus 222 ~VsViIP~yne~--~~l~~tL~Sll~q~yp~~~~~IiVvDd-ssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~------ 292 (482)
.+++|+|.-=.. +.+.+++.+.+..++.. . | +||| ..-...... .+.... ..|.++.......+
T Consensus 29 ~it~Ivp~~~GGg~D~~aR~~~~~l~k~lg~-~--v-~V~N~pGagG~ia~-~~va~a--~pG~t~~l~~~~~~~~~~~~ 101 (319)
T COG3181 29 PITIIVPAAAGGGTDQTARALAESLSKELGQ-P--V-VVDNKPGAGGAIAA-GAVAKA--APGYTILLIAGSTPALLLPI 101 (319)
T ss_pred CeEEEEecCCCChHHHHHHHHHHHHHHHhCC-C--E-EEEecCCCcchHHH-HHHHhc--CCCCceEEEecCcccccchh
Confidence 599999976554 89999999888766543 2 4 4444 333332221 122221 11344333322100
Q ss_pred CCCcc-ccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhcCCC
Q 011596 293 DGYKA-GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEE 341 (482)
Q Consensus 293 ~g~Ka-~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~ 341 (482)
.+++. .-++.---.+.......++.+.+|..+ ..+..++..++.||+
T Consensus 102 ~~~~~~~~~~D~~pva~v~~~p~~l~v~~~s~~--~t~~dlv~~~k~~p~ 149 (319)
T COG3181 102 LGGLPYYKLKDFTPVASLVSDPGVLVVRADSPY--KTLKDLVAYAKADPG 149 (319)
T ss_pred hccCCCCchhhceehhheecccceEEEeCCCCc--ccHHHHHHHHHhCCC
Confidence 00011 001110000013446678888888654 469999999999998
No 207
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=38.18 E-value=2.6e+02 Score=28.13 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=54.5
Q ss_pred ecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCC-CCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 228 PMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDS-DDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 228 P~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDds-sdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
|.-+. ..+..++.++.+.... + |+|+-.. ..+...+.+. .....++++.+.......| .++++..++..
T Consensus 26 pv~g~-pli~~~l~~l~~~gi~--~--i~vv~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~G-~~~al~~a~~~ 95 (353)
T TIGR01208 26 PVANK-PILQYAIEDLAEAGIT--D--IGIVVGPVTGEEIKEIVG----EGERFGAKITYIVQGEPLG-LAHAVYTARDF 95 (353)
T ss_pred EECCE-eHHHHHHHHHHHCCCC--E--EEEEeCCCCHHHHHHHHh----cccccCceEEEEECCCCCC-HHHHHHHHHHh
Confidence 44455 7888999998876432 3 3344333 4444433332 1112345555544333444 67778777764
Q ss_pred cccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 307 SYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
. .+.+ ++++.+|...+ ..+.+++..+..
T Consensus 96 l--~~~~-~li~~gD~~~~-~~l~~l~~~~~~ 123 (353)
T TIGR01208 96 L--GDDD-FVVYLGDNLIQ-DGISRFVKSFEE 123 (353)
T ss_pred c--CCCC-EEEEECCeecC-ccHHHHHHHHHh
Confidence 2 2345 45667898776 456777776653
No 208
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=36.55 E-value=5.2e+02 Score=27.06 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCCeEEEEeecC-CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHh----hhCCCeEEEEeccCCC
Q 011596 219 FFPMVLVQIPMC-NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKW----QEAGANIVYRHRILRD 293 (482)
Q Consensus 219 ~~P~VsViIP~y-ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~----~~~~v~vv~~~~~~~~ 293 (482)
..|+...+|.++ ++.+.+++.|.++- .|...+ ++=+|-.+++.....+.+.++.. ...++.++-....-..
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLY---hprN~y-~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~W 151 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALY---HPRNQY-VVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTY 151 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhc---CCCceE-EEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeecc
Confidence 478999999988 77799999888763 344333 44566655554333222222210 0123433321111223
Q ss_pred CCcc--cc----HHHHhhhcccCCceEEEEEcCCCCC--ChHHH
Q 011596 294 GYKA--GN----LKSAMNCSYVKDYEFVAIFDADFQP--NPDFL 329 (482)
Q Consensus 294 g~Ka--~a----ln~al~~~~~a~~d~Vl~lDaD~~~--~pd~L 329 (482)
|+-. .| +...++. ..+.||++.+.+.+.| +.+.+
T Consensus 152 GG~S~V~AtL~~m~~LL~~--~~~WDyfinLSGsDyPLkTqdel 193 (421)
T PLN03183 152 RGPTMVANTLHACAILLKR--SKDWDWFINLSASDYPLVTQDDL 193 (421)
T ss_pred CChHHHHHHHHHHHHHHhh--CCCCCEEEEccCCcccccCHHHH
Confidence 3221 11 2222232 4678999999998876 55554
No 209
>PF11181 YflT: Heat induced stress protein YflT
Probab=34.04 E-value=78 Score=25.84 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=24.6
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEE
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILI 255 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~I 255 (482)
+|-+|+..+.+...|+.+.++.|..+.+.|
T Consensus 2 ~Igv~~~~~E~~~~I~~L~~~Gy~~ddI~V 31 (103)
T PF11181_consen 2 VIGVYDNEEEALSAIEELKAQGYSEDDIYV 31 (103)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcccEEE
Confidence 456777788888999999999999988544
No 210
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=33.15 E-value=2.2e+02 Score=28.95 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=55.1
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhh----hCCCeEE--EEeccCC--CCCcc
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQ----EAGANIV--YRHRILR--DGYKA 297 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~----~~~v~vv--~~~~~~~--~g~Ka 297 (482)
++|.-+....|..+|+.+.+.... + |+|+-+...+...+.+.+. .+|. ..++.+. +.....+ ..|-+
T Consensus 28 llpv~gk~pli~~~l~~l~~~Gi~--~--i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta 102 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCANSGID--T--VGVLTQYQPLELNNHIGIG-SPWDLDRINGGVTILPPYSESEGGKWYKGTA 102 (380)
T ss_pred eeeeCCceeehhHHHHHHHhCCCC--E--EEEEecCCHHHHHHHHhCC-CcccccCCCCCEEEeCCcccCCCCcccCCcH
Confidence 566666646888888988886543 3 3344444444433333210 1111 0123332 2222221 12356
Q ss_pred ccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhh
Q 011596 298 GNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFK 337 (482)
Q Consensus 298 ~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~ 337 (482)
+++..+.......+.|.++++.+|.+.+.+ +.+++....
T Consensus 103 ~al~~a~~~l~~~~~~~~lV~~gD~l~~~d-~~~ll~~h~ 141 (380)
T PRK05293 103 HAIYQNIDYIDQYDPEYVLILSGDHIYKMD-YDKMLDYHK 141 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCEEEcCC-HHHHHHHHH
Confidence 777777664311224789999999977665 445555443
No 211
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=32.44 E-value=3e+02 Score=28.38 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=47.8
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|..+ ...+..+++.+.+. . .++.| ++ ....+...+.+. ++ ..++++++.......| .++++...
T Consensus 25 lpi~g-kPli~~~i~~l~~~-~--~~i~I-vv-~~~~~~i~~~~~----~~-~~~v~~~~~~~~~~~g-t~~al~~~--- 89 (430)
T PRK14359 25 HTICG-KPMLFYILKEAFAI-S--DDVHV-VL-HHQKERIKEAVL----EY-FPGVIFHTQDLENYPG-TGGALMGI--- 89 (430)
T ss_pred CEECC-ccHHHHHHHHHHHc-C--CcEEE-EE-CCCHHHHHHHHH----hc-CCceEEEEecCccCCC-cHHHHhhc---
Confidence 34444 56777788887764 1 23433 33 333333333332 11 1245555432222233 44555431
Q ss_pred cccCCceEEEEEcCCC-CCChHHHHHHHH
Q 011596 307 SYVKDYEFVAIFDADF-QPNPDFLRRTVP 334 (482)
Q Consensus 307 ~~~a~~d~Vl~lDaD~-~~~pd~L~~lv~ 334 (482)
....|.++++++|. ...++.++++..
T Consensus 90 --~~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 90 --EPKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred --ccCCCeEEEEECCccCCCHHHHHHHHh
Confidence 23468999999998 557888877653
No 212
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=31.32 E-value=77 Score=31.49 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=37.0
Q ss_pred cCCceEEEEEcCCCCC-ChHHHHHHHHHhhcCCCeEEEeeeeeeecC
Q 011596 309 VKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEELGLVQARWSFVNK 354 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~ 354 (482)
....+||+++++|+.+ ++..+..++..|.+ .+++++|-+..+.+.
T Consensus 114 ~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~-n~idilQLre~~~~~ 159 (323)
T PHA02688 114 DKEDEYIVVVEDDNTLRDITTLHPIIKAMKE-KNIDILQLRETLHNN 159 (323)
T ss_pred ccCCCeEEEEcCCCcccccHHHHHHHHHHHh-cCeEEEEeehhhhCC
Confidence 3568999999999877 66889999999996 679999997666555
No 213
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=29.55 E-value=1.9e+02 Score=27.27 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=47.4
Q ss_pred EEEEeecCC-chHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEe-cc-CCCCC--cc
Q 011596 223 VLVQIPMCN-EKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRH-RI-LRDGY--KA 297 (482)
Q Consensus 223 VsViIP~yn-e~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~-~~-~~~g~--Ka 297 (482)
+..+|-+|+ ..+.++..+..+- .|.. .-+|-+|-.+++...+.+++.... ..++.... +. -..|+ ..
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~-~f~iHiD~k~~~~~~~~~~~~~~~----~~nv~~v~~r~~v~WG~~S~v 72 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDN-DFYIHIDKKSPDYFYEEIKKLISC----FPNVHFVPKRVDVRWGGFSLV 72 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTS-EEEEEE-TTS-HHHHHHHHHHHCT-----TTEEE-SS-----TTSHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCC-EEEEEEcCCCChHHHHHHHHhccc----CCceeecccccccccCCccHH
Confidence 456788877 6677777776654 3443 334567776555555544443322 22333333 21 22331 11
Q ss_pred ccHHHHhhhcc--cCCceEEEEEcCCCCC--ChHHHHHHHHHh
Q 011596 298 GNLKSAMNCSY--VKDYEFVAIFDADFQP--NPDFLRRTVPHF 336 (482)
Q Consensus 298 ~aln~al~~~~--~a~~d~Vl~lDaD~~~--~pd~L~~lv~~f 336 (482)
.|.-.+++.+. ..+.||++++.+++.| +.+.+.+.+...
T Consensus 73 ~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~ 115 (244)
T PF02485_consen 73 EATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhc
Confidence 12222333222 2478999998888765 555555554443
No 214
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=28.99 E-value=18 Score=35.10 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHH
Q 011596 144 IKGAFDLLYSSWVL 157 (482)
Q Consensus 144 ~~~~~~~~y~~w~~ 157 (482)
+-++.+|.| .|+.
T Consensus 117 lLaL~vW~Y-m~lL 129 (381)
T PF05297_consen 117 LLALGVWFY-MWLL 129 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHH-HHHH
Confidence 334455888 4443
No 215
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=28.76 E-value=3.4e+02 Score=24.94 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHhhcC
Q 011596 312 YEFVAIFDADFQPNPDFLRRTVPHFKDN 339 (482)
Q Consensus 312 ~d~Vl~lDaD~~~~pd~L~~lv~~f~~~ 339 (482)
.++|+|+-+|..-+++.+.++...++++
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~ 135 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN 135 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc
Confidence 5889999999888888898899988863
No 216
>PHA01631 hypothetical protein
Probab=28.41 E-value=27 Score=31.23 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCceEEEEEcCCCCCChH
Q 011596 310 KDYEFVAIFDADFQPNPD 327 (482)
Q Consensus 310 a~~d~Vl~lDaD~~~~pd 327 (482)
-+.|+++++|+|..+++-
T Consensus 70 i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred CCccEEEEeccceEecCc
Confidence 568899999999988763
No 217
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=28.02 E-value=72 Score=23.37 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=28.7
Q ss_pred cccccCccchhhhhhhhhhhhhhhHHHHHHHHHHH
Q 011596 32 KTRNRNAKQLTWVLLLKAHKAAGCLTSIASAFFSL 66 (482)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (482)
++|.||..--.||||.-+==+.|.+.+.+-++|.-
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfgRl~Y~~I~a~~h 35 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFGRLIYSAIGAWVH 35 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45778888889999999999999888887776653
No 218
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=27.34 E-value=3.3e+02 Score=24.83 Aligned_cols=89 Identities=15% Similarity=0.281 Sum_probs=59.6
Q ss_pred ecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhc
Q 011596 228 PMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCS 307 (482)
Q Consensus 228 P~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~ 307 (482)
.+++.+ .+...++++.+ - -++ |+|.-+-+.+.+++.++ ..++.++ +.++.| -..-++++++.
T Consensus 23 eV~Gkp-LI~~v~~al~~-~--~d~--i~v~isp~tp~t~~~~~-------~~gv~vi---~tpG~G-Yv~Dl~~al~~- 84 (177)
T COG2266 23 EVCGKP-LIDRVLEALRK-I--VDE--IIVAISPHTPKTKEYLE-------SVGVKVI---ETPGEG-YVEDLRFALES- 84 (177)
T ss_pred hhCCcc-HHHHHHHHHHh-h--cCc--EEEEeCCCCHhHHHHHH-------hcCceEE---EcCCCC-hHHHHHHHHHh-
Confidence 344443 44455555544 1 123 67788888888888776 4567766 344555 55678999984
Q ss_pred ccCCceEEEEEcCCC-CCChHHHHHHHHHhh
Q 011596 308 YVKDYEFVAIFDADF-QPNPDFLRRTVPHFK 337 (482)
Q Consensus 308 ~~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~ 337 (482)
-+.=++++-+|- .+.|+.+......+.
T Consensus 85 ---l~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 85 ---LGTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ---cCCceEEEecccccCCHHHHHHHHHHHh
Confidence 233677888887 568999999999886
No 219
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=27.02 E-value=5.4e+02 Score=24.37 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEE-EEeccCCCCCccccHHHHhhh--cccC
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIV-YRHRILRDGYKAGNLKSAMNC--SYVK 310 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv-~~~~~~~~g~Ka~aln~al~~--~~~a 310 (482)
+.+..+|.++++..+ ++=+|++ ++.+...+.++ ..|+.+. .++.+-..+ .+..+..++.. ....
T Consensus 29 pLi~~~I~aA~ns~~----fd~VviS-sDs~~Il~~A~-------~ygak~~~~Rp~~LA~D-~ast~~~~lh~le~~~~ 95 (228)
T COG1083 29 PLIGYTIEAALNSKL----FDKVVIS-SDSEEILEEAK-------KYGAKVFLKRPKELASD-RASTIDAALHALESFNI 95 (228)
T ss_pred chHHHHHHHHhcCCc----cceEEEc-CCcHHHHHHHH-------HhCccccccCChhhccC-chhHHHHHHHHHHHhcc
Confidence 578888998888764 2222333 33444444443 4455553 222222222 33333233322 1345
Q ss_pred CceEEEEEcCCC-CCChHHHHHHHHHhhcCCCeEEEeeee
Q 011596 311 DYEFVAIFDADF-QPNPDFLRRTVPHFKDNEELGLVQARW 349 (482)
Q Consensus 311 ~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~~p~v~~V~~~~ 349 (482)
..+.++.+++-. ......+++....|..++ .+.+-+..
T Consensus 96 ~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~-~~sl~sa~ 134 (228)
T COG1083 96 DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQ-YDSLFSAV 134 (228)
T ss_pred ccCeeEEeccCccccchhHHHHHHHHHhcCC-CcceEEEe
Confidence 678888888877 457889999999998755 44444443
No 220
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=26.85 E-value=4.8e+02 Score=24.62 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCc--cccHHHHhhhcc
Q 011596 231 NEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYK--AGNLKSAMNCSY 308 (482)
Q Consensus 231 ne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~K--a~aln~al~~~~ 308 (482)
+....+..+++.+.+...-+ + .|+|+.++..+...+++. +..+.++ .||+ ......|++..
T Consensus 26 ~Gkpvl~~tl~~f~~~~~i~-~-Ivvv~~~~~~~~~~~~~~-------~~~v~iv-------~GG~tR~~SV~ngL~~l- 88 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLASPEID-E-IVVVVPPEDIDYVEELLS-------KKKVKIV-------EGGATRQESVYNGLKAL- 88 (221)
T ss_dssp TTEEHHHHHHHHHHTTTTES-E-EEEEESGGGHHHHHHHHH-------HTTEEEE-------E--SSHHHHHHHHHHCH-
T ss_pred CCeEeHHHHHHHHhcCCCCC-e-EEEEecchhHHHHHHhhc-------CCCEEEe-------cCChhHHHHHHHHHHHH-
Confidence 44578999999988754322 3 355555554455544443 2344433 1223 33455677643
Q ss_pred cCCceEEEEEcCCC-CCChHHHHHHHHHhhc
Q 011596 309 VKDYEFVAIFDADF-QPNPDFLRRTVPHFKD 338 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~-~~~pd~L~~lv~~f~~ 338 (482)
..+.|+|++=|+=- .++++.+.+++..+..
T Consensus 89 ~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 89 AEDCDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp HCTSSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred HcCCCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 24458999999875 6699999999999986
No 221
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=26.40 E-value=1e+02 Score=30.61 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=37.5
Q ss_pred cCCceEEEEEcCCCCC-ChHHHHHHHHHhhcCCCeEEEeeeeeeecC
Q 011596 309 VKDYEFVAIFDADFQP-NPDFLRRTVPHFKDNEELGLVQARWSFVNK 354 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~-~pd~L~~lv~~f~~~p~v~~V~~~~~~~n~ 354 (482)
....+|++++++|..+ ++..+..++..|++ .+++++|-+....+.
T Consensus 116 ~~~~~yivVvEddnT~~~~~~l~~~I~aM~~-k~idilQLre~~~~~ 161 (325)
T PF03213_consen 116 DPEDKYIVVVEDDNTLRDITTLHPIIKAMKK-KNIDILQLRETYHNS 161 (325)
T ss_pred cCCCCeEEEEeCCCcccccHHHHHHHHHHHH-cCceEEEEehhhhcc
Confidence 3567899999999766 67999999999995 799999998776654
No 222
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=25.85 E-value=89 Score=18.90 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 011596 54 GCLTSIASAFFSLGSLVRRRV 74 (482)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~ 74 (482)
|.+.|++-.++.++...|||.
T Consensus 3 GSlGwl~LllL~~~~~rRr~~ 23 (26)
T TIGR03501 3 GSLGWLSLLLLLLLGLRRRRX 23 (26)
T ss_pred chHHHHHHHHHHHHHHHHhhc
Confidence 778998887776665444443
No 223
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=25.59 E-value=7.9e+02 Score=25.86 Aligned_cols=108 Identities=10% Similarity=0.140 Sum_probs=65.1
Q ss_pred eEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHH
Q 011596 222 MVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLK 301 (482)
Q Consensus 222 ~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln 301 (482)
.+..+.-+|.+-+.+++.+.++-. | ...-++.+|..+++.....++++...++ +| ++.......-.++.+++
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh---P-qN~ycihvD~~s~~~fk~~~~~L~~cf~--NV--~v~~k~~~v~~~G~s~l 175 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH---P-QNVYCIHVDAKSPPEFRVAMQQLASCFP--NV--IVLPKRESVTYGGHSIL 175 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC---C-cCcceEEECCCCCHHHHHHHHHHHhcCC--ce--EEeccccceecCCchhh
Confidence 688889999999999888887643 3 3444778999999988877776665433 33 33322222111222222
Q ss_pred H----HhhhcccC--CceEEEEEcCCCCC--ChHHHHHHHHHhh
Q 011596 302 S----AMNCSYVK--DYEFVAIFDADFQP--NPDFLRRTVPHFK 337 (482)
Q Consensus 302 ~----al~~~~~a--~~d~Vl~lDaD~~~--~pd~L~~lv~~f~ 337 (482)
. +++..... +-+|++.+-+.+.| +.+.+.++...+.
T Consensus 176 ~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~ 219 (439)
T KOG0799|consen 176 AAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILR 219 (439)
T ss_pred HHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcC
Confidence 2 23322222 36777776554433 5677777777774
No 224
>PLN00176 galactinol synthase
Probab=24.92 E-value=3.7e+02 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.0
Q ss_pred cCCceEEEEEcCCCCCCh
Q 011596 309 VKDYEFVAIFDADFQPNP 326 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~p 326 (482)
..++|-|+++|+|+++..
T Consensus 110 l~~ydkvlyLDaD~lv~~ 127 (333)
T PLN00176 110 FVEYSKMIYLDGDIQVFE 127 (333)
T ss_pred ccccceEEEecCCEEeec
Confidence 357899999999998754
No 225
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=24.89 E-value=4.3e+02 Score=25.99 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=14.8
Q ss_pred cCCceEEEEEcCCCCCCh
Q 011596 309 VKDYEFVAIFDADFQPNP 326 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~p 326 (482)
..++|-|+++|+|+++-.
T Consensus 89 l~~y~kvlyLDaD~l~~~ 106 (278)
T cd06914 89 QTEYDRIIYFDSDSIIRH 106 (278)
T ss_pred ccceeeEEEecCChhhhc
Confidence 467999999999998643
No 226
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=24.29 E-value=2.5e+02 Score=31.12 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=17.6
Q ss_pred chhhHhHHHHHHHHHHHHhhHhhccchH
Q 011596 140 SPLAIKGAFDLLYSSWVLVRVHYLAPPL 167 (482)
Q Consensus 140 ~~~~~~~~~~~~y~~w~~~r~~~~~~~l 167 (482)
+..+++++....|++|..+....+++.+
T Consensus 587 F~~~l~ai~glf~~Yw~~l~lFqTL~~~ 614 (636)
T PF05817_consen 587 FHGGLGAIEGLFFLYWLGLNLFQTLPYL 614 (636)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4456777777888888665444444433
No 227
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=23.97 E-value=5.2e+02 Score=24.38 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCC-CCc--cccH-HHHhhhc--
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRD-GYK--AGNL-KSAMNCS-- 307 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~-g~K--a~al-n~al~~~-- 307 (482)
..+..++.|++... ++..+.| +++++-.+...+.++ ..+.+++.+...... ..+ .... .......
T Consensus 14 ~~a~vl~~SL~~~~-~~~~~~v-l~~~~is~~~~~~L~-------~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~ 84 (240)
T cd02537 14 PGALVLGYSLRKVG-SSYDLVV-LVTPGVSEESREALE-------EVGWIVREVEPIDPPDSANLLKRPRFKDTYTKLRL 84 (240)
T ss_pred HHHHHHHHHHHhcC-CCCCEEE-EECCCCCHHHHHHHH-------HcCCEEEecCccCCcchhhhccchHHHHHhHHHHh
Confidence 56667777887753 3334544 455554444444444 234444432221111 100 0001 1111111
Q ss_pred -ccCCceEEEEEcCCCCCChH
Q 011596 308 -YVKDYEFVAIFDADFQPNPD 327 (482)
Q Consensus 308 -~~a~~d~Vl~lDaD~~~~pd 327 (482)
...+.|-|+++|+|+++-.+
T Consensus 85 ~~l~~~drvlylD~D~~v~~~ 105 (240)
T cd02537 85 WNLTEYDKVVFLDADTLVLRN 105 (240)
T ss_pred ccccccceEEEEeCCeeEccC
Confidence 13478999999999987543
No 228
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.93 E-value=5.3e+02 Score=24.93 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEEEcC-CCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCc
Q 011596 234 EVYQQSIAAVCNLDWPKSKILIQVLDD-SDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY 312 (482)
Q Consensus 234 ~~l~~tL~Sll~q~yp~~~~~IiVvDd-ssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~ 312 (482)
+.+.+...++++ ..|..+ +++--+ |+-.++ ++++...+|.+.|.+++.+.+.. -..+...++.......
T Consensus 37 ~~l~~Nt~~Fl~-G~pann--vLL~G~rGtGKSS--lVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l~~~~~ 106 (249)
T PF05673_consen 37 EALIENTEQFLQ-GLPANN--VLLWGARGTGKSS--LVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLLRDRPY 106 (249)
T ss_pred HHHHHHHHHHHc-CCCCcc--eEEecCCCCCHHH--HHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHHhcCCC
Confidence 555555566665 567644 444444 555543 56777788888899988664332 1223333333224668
Q ss_pred eEEEEEcCCCCC
Q 011596 313 EFVAIFDADFQP 324 (482)
Q Consensus 313 d~Vl~lDaD~~~ 324 (482)
.||+|+| |--.
T Consensus 107 kFIlf~D-DLsF 117 (249)
T PF05673_consen 107 KFILFCD-DLSF 117 (249)
T ss_pred CEEEEec-CCCC
Confidence 9999999 4444
No 229
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=23.65 E-value=6e+02 Score=23.65 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHH---hCCCCCCceEEEEEcCCCCHH--HHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHh-
Q 011596 231 NEKEVYQQSIAAVC---NLDWPKSKILIQVLDDSDDPT--AQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAM- 304 (482)
Q Consensus 231 ne~~~l~~tL~Sll---~q~yp~~~~~IiVvDdssdd~--t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al- 304 (482)
|+..+++..+.... ..+.| .+.+++.|++.++. +.+++.+ -...++-+-++ +-| +.. +++
T Consensus 84 ~y~~vm~~v~~~y~~~~~~~~P--~~VlFiTDG~~~~~~~~~~~i~~----as~~pifwqFV----giG-~~~---f~fL 149 (200)
T PF10138_consen 84 NYAPVMEDVLDHYFKREPSDAP--ALVLFITDGGPDDRRAIEKLIRE----ASDEPIFWQFV----GIG-DSN---FGFL 149 (200)
T ss_pred chHHHHHHHHHHHhhcCCCCCC--eEEEEEecCCccchHHHHHHHHh----ccCCCeeEEEE----Eec-CCc---chHH
Confidence 45578888887777 33445 37777777766554 3333322 12344444333 112 111 111
Q ss_pred hhc------ccCCceEEEEEcCCCCCChHHHHHHHHHh
Q 011596 305 NCS------YVKDYEFVAIFDADFQPNPDFLRRTVPHF 336 (482)
Q Consensus 305 ~~~------~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f 336 (482)
+.. ...+.+++.+=|-|.+-+..--++++..|
T Consensus 150 ~kLD~l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL~Ef 187 (200)
T PF10138_consen 150 EKLDDLAGRVVDNAGFFAIDDIDELSDEELYDRLLAEF 187 (200)
T ss_pred HHhhccCCcccCCcCeEecCCcccCCHHHHHHHHHHHH
Confidence 110 12455666666666555666667777666
No 230
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=23.43 E-value=2e+02 Score=22.40 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=30.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCceEEEEEcCC
Q 011596 255 IQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDAD 321 (482)
Q Consensus 255 IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD 321 (482)
|+.++++ ++...+.+.+..+.+.+.|+++.+-..... -+..+..+-. .+..|++++..+
T Consensus 4 Ii~~~~~-~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~---~~k~~~~a~~----~g~p~~iiiG~~ 62 (94)
T PF03129_consen 4 IIPVGKK-DEEIIEYAQELANKLRKAGIRVELDDSDKS---LGKQIKYADK----LGIPFIIIIGEK 62 (94)
T ss_dssp EEESSCS-HHHHHHHHHHHHHHHHHTTSEEEEESSSST---HHHHHHHHHH----TTESEEEEEEHH
T ss_pred EEEeCCC-cHHHHHHHHHHHHHHHHCCCEEEEECCCCc---hhHHHHHHhh----cCCeEEEEECch
Confidence 4444444 445556666666666677776654421111 1122333333 566777777643
No 231
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=22.78 E-value=6.5e+02 Score=26.13 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=57.2
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhh---C-CCeEEEEec------cCCCCC
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQE---A-GANIVYRHR------ILRDGY 295 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~---~-~v~vv~~~~------~~~~g~ 295 (482)
++|.-+....|.-.++++.+.... + |+|+-....+...+.+.+ .|.. . +..+.+... ++..-|
T Consensus 40 llpv~gkp~lI~~~l~~l~~~Gi~--~--i~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~e~~~lG 112 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCINSGIR--R--IGVLTQYKAHSLIRHIQR---GWSFFREELGEFVDLLPAQQRVDEENWYRG 112 (425)
T ss_pred eEEECCEEEEhHHHHHHHHHCCCC--e--EEEEecCCHHHHHHHHHh---hhcccccCCCCeEEEeCCcccCCCCccccC
Confidence 567777666888888888886543 2 444444444444443332 1211 0 111211111 111123
Q ss_pred ccccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 296 KAGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 296 Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
-++++..+.........|.++++.+|.+.+.+ +.+++....+
T Consensus 113 Ta~al~~a~~~l~~~~~d~~lVl~gD~l~~~d-l~~ll~~h~~ 154 (425)
T PRK00725 113 TADAVYQNLDIIRRYDPKYVVILAGDHIYKMD-YSRMLADHVE 154 (425)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEecCCeEeccC-HHHHHHHHHH
Confidence 67777777664322235789999999976554 6777776554
No 232
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=22.43 E-value=5.9e+02 Score=23.09 Aligned_cols=92 Identities=9% Similarity=0.068 Sum_probs=52.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhhcccCCc-eEEEEEcCCCCCChHHHHHHH
Q 011596 255 IQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNCSYVKDY-EFVAIFDADFQPNPDFLRRTV 333 (482)
Q Consensus 255 IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~~~~a~~-d~Vl~lDaD~~~~pd~L~~lv 333 (482)
||++-||+.-. +..++.... +.+.+.+-...-+++.-...-+-..+. .+.+ ..++++|+--......=++.+
T Consensus 2 VIlvTDGD~~A-~ravE~aa~---~iGgRCIS~S~GNPT~lsG~elV~lIk---~a~~DPV~VMfDD~G~~g~G~GE~Al 74 (180)
T PF14097_consen 2 VILVTDGDEYA-KRAVEIAAK---NIGGRCISQSAGNPTPLSGEELVELIK---QAPHDPVLVMFDDKGFIGEGPGEQAL 74 (180)
T ss_pred EEEEECChHHH-HHHHHHHHH---HhCcEEEeccCCCCCcCCHHHHHHHHH---hCCCCCEEEEEeCCCCCCCCccHHHH
Confidence 45566654333 333333333 566777755433333323334555555 3455 466667766677777777888
Q ss_pred HHhhcCCCeEEEeeeeeeec
Q 011596 334 PHFKDNEELGLVQARWSFVN 353 (482)
Q Consensus 334 ~~f~~~p~v~~V~~~~~~~n 353 (482)
.+...+|++.+++.--...|
T Consensus 75 ~~v~~h~~IeVLG~iAVASn 94 (180)
T PF14097_consen 75 EYVANHPDIEVLGAIAVASN 94 (180)
T ss_pred HHHHcCCCceEEEEEEEEec
Confidence 88888998877765544343
No 233
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=22.05 E-value=8.1e+02 Score=25.75 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=62.7
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccc
Q 011596 219 FFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAG 298 (482)
Q Consensus 219 ~~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~ 298 (482)
++|+| +=|.... ..+...|+++.... | +++ +++-....+...+.+.+ ...+.++.. .++.| -++
T Consensus 19 ~lPKV--LH~vaGk-pMl~hVi~~a~~l~-~-~~i--~vVvGh~ae~V~~~~~~------~~~v~~v~Q--~eqlG-TgH 82 (460)
T COG1207 19 DLPKV--LHPVAGK-PMLEHVIDAARALG-P-DDI--VVVVGHGAEQVREALAE------RDDVEFVLQ--EEQLG-TGH 82 (460)
T ss_pred CCccc--chhccCc-cHHHHHHHHHhhcC-c-ceE--EEEEcCCHHHHHHHhcc------ccCceEEEe--cccCC-hHH
Confidence 56654 3444444 35666677776654 2 233 34444444444332221 123555533 33444 778
Q ss_pred cHHHHhhhcccCCce-EEEEEcCCC-CCChHHHHHHHHHhhcC-CCeEEEee
Q 011596 299 NLKSAMNCSYVKDYE-FVAIFDADF-QPNPDFLRRTVPHFKDN-EELGLVQA 347 (482)
Q Consensus 299 aln~al~~~~~a~~d-~Vl~lDaD~-~~~pd~L~~lv~~f~~~-p~v~~V~~ 347 (482)
|...+..+. ..+++ .++++-+|+ .+.++.|++++..-... ..+.+++.
T Consensus 83 AV~~a~~~l-~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 83 AVLQALPAL-ADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred HHHhhhhhh-hcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 888887753 23444 788899998 55899999888776532 24444444
No 234
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=21.62 E-value=2.5e+02 Score=28.23 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=52.9
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhC-----CCeEEEE----eccCCCCCc
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEA-----GANIVYR----HRILRDGYK 296 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~-----~v~vv~~----~~~~~~g~K 296 (482)
++|..+....+...++++.+.... + |+|+-+...+...+.+.+ .|... .+.+... ..++...|.
T Consensus 23 llpv~g~~pli~~~l~~l~~~gi~--~--i~iv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt 95 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCINSGIR--R--IGVLTQYKSHSLNRHIQR---GWDFDGFIDGFVTLLPAQQRESGTDWYQGT 95 (361)
T ss_pred cceecceeeEeeehhhhhhhcCCc--e--EEEEeccChHHHHHHHHh---ccCccCccCCCEEEeCCcccCCCCccccCc
Confidence 344455435677777777776532 2 344444344444443331 12111 1222110 011111236
Q ss_pred cccHHHHhhhcccCCceEEEEEcCCCCCChHHHHHHHHHhhc
Q 011596 297 AGNLKSAMNCSYVKDYEFVAIFDADFQPNPDFLRRTVPHFKD 338 (482)
Q Consensus 297 a~aln~al~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~ 338 (482)
++++..++........+.++++.+|.+.+.+ +.+++..+.+
T Consensus 96 ~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~-l~~~l~~~~~ 136 (361)
T TIGR02091 96 ADAVYQNLDLIEDYDPEYVLILSGDHIYKMD-YEKMLDYHIE 136 (361)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHH
Confidence 6777777664322335788999999977665 5566665543
No 235
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=21.52 E-value=3.7e+02 Score=28.46 Aligned_cols=99 Identities=12% Similarity=0.202 Sum_probs=48.8
Q ss_pred eecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHhhhCCCeEEEEeccCCCCCccccHHHHhhh
Q 011596 227 IPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKWQEAGANIVYRHRILRDGYKAGNLKSAMNC 306 (482)
Q Consensus 227 IP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~~~~~v~vv~~~~~~~~g~Ka~aln~al~~ 306 (482)
+|..+....++.+++.+..... . ++ ++|+.+.. ...+++..+.+.....+++.. +...| .++++..+...
T Consensus 27 l~l~g~~~ll~~tl~~l~~~~~-~-~i-viv~~~~~----~~~~~~~l~~~~~~~~~~i~E--p~~~g-Ta~ai~~aa~~ 96 (468)
T TIGR01479 27 LALVGDLTMLQQTLKRLAGLPC-S-SP-LVICNEEH----RFIVAEQLREIGKLASNIILE--PVGRN-TAPAIALAALL 96 (468)
T ss_pred eEcCCCCcHHHHHHHHHhcCCC-c-Cc-EEecCHHH----HHHHHHHHHHcCCCcceEEec--ccccC-chHHHHHHHHH
Confidence 4445667889999999887642 2 33 23332211 122233333221111233333 33333 44444443322
Q ss_pred ccc--CCceEEEEEcCCCCC-ChHHHHHHHHH
Q 011596 307 SYV--KDYEFVAIFDADFQP-NPDFLRRTVPH 335 (482)
Q Consensus 307 ~~~--a~~d~Vl~lDaD~~~-~pd~L~~lv~~ 335 (482)
... ...++++++-+|+.+ ++..+.+++..
T Consensus 97 ~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~ 128 (468)
T TIGR01479 97 AARRNGEDPLLLVLAADHVITDEDAFQAAVKL 128 (468)
T ss_pred HHHHHCCCcEEEEecCceeecCHHHHHHHHHH
Confidence 101 235689999999766 44556666554
No 236
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=21.19 E-value=4.5e+02 Score=22.91 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHH-----HHHHhhhhhcCCCCCCCCCCCcchhhhhhhhHH--HHHHHHHHHHHHHHHHHHHhh
Q 011596 52 AAGCLTSIASAFFSL-----GSLVRRRVAAGRTDQPPTSADTHEIQKLRTRFF--YSCIKLFLWLSVVLFAFELCA 120 (482)
Q Consensus 52 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~ 120 (482)
-+|..+=+.++.+++ +.-..||+-..-+|.+ ++|..+..-.-+- . .+..-+.+.++++++.+.+++
T Consensus 35 ~~Gt~aL~ls~~l~~mig~yl~~~~rr~~~rPED~~--daEI~dgAGe~Gf-FsP~SwWPl~la~~~al~~lGla~ 107 (137)
T PF12270_consen 35 WVGTVALVLSGGLALMIGFYLRFTARRIGPRPEDRE--DAEIADGAGELGF-FSPHSWWPLVLAAAAALVFLGLAF 107 (137)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc--ccccccCCCCcCc-CCCccHhHHHHHHHHHHHHHHHHH
Confidence 345555444444443 3445677733323322 3333332111111 1 233445556666666666554
No 237
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=21.12 E-value=22 Score=28.53 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.5
Q ss_pred cccccCccchhhhhhhhhhhhhhhHHHH
Q 011596 32 KTRNRNAKQLTWVLLLKAHKAAGCLTSI 59 (482)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (482)
-+...+.||+ +||++||.+.-
T Consensus 46 ~g~E~S~rQv-------~~Rla~tw~~w 66 (93)
T PF08471_consen 46 FGGETSVRQV-------FDRLAGTWTYW 66 (93)
T ss_pred ccccchHHHH-------HHHHHHHHHHH
Confidence 4557889998 69999998753
No 238
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=21.08 E-value=3e+02 Score=26.16 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=33.9
Q ss_pred EEEeecCCc-hHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHH
Q 011596 224 LVQIPMCNE-KEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLI 270 (482)
Q Consensus 224 sViIP~yne-~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~ 270 (482)
.|+|.+-+. +.++-+|+..+.++.++.+++.|+-..++.......++
T Consensus 3 ~iLlatlG~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll 50 (224)
T PF09623_consen 3 NILLATLGTSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL 50 (224)
T ss_pred eEEEEecCCCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH
Confidence 356666666 48999999999999888878776655665555544444
No 239
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=21.07 E-value=6.3e+02 Score=23.21 Aligned_cols=98 Identities=9% Similarity=0.084 Sum_probs=47.4
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHH-Hh-hhCCCeEEEEeccCCCCCccccHHHH
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVL-KW-QEAGANIVYRHRILRDGYKAGNLKSA 303 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~-~~-~~~~v~vv~~~~~~~~g~Ka~aln~a 303 (482)
++|.-|. ..+.-+++.+.+.... + |+|+-....+...+.+.+... .+ ...++.+++.......| -+.++..+
T Consensus 25 llpv~g~-pli~~~l~~l~~~gi~--~--i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~G-ta~~l~~~ 98 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEKAGVE--E--VFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAG-DALRLRDI 98 (216)
T ss_pred cceECCE-EHHHHHHHHHHHCCCC--e--EEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCc-cHHHHHHH
Confidence 4466665 7888888888875532 3 333333333333332221100 00 01123333332222233 55555555
Q ss_pred hhhcccCCceEEEEEcCCCCCChHHHHHHHH
Q 011596 304 MNCSYVKDYEFVAIFDADFQPNPDFLRRTVP 334 (482)
Q Consensus 304 l~~~~~a~~d~Vl~lDaD~~~~pd~L~~lv~ 334 (482)
... -+.| ++++.+|.+.+.+ +..++.
T Consensus 99 ~~~---i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 99 RGL---IRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred hhc---CCCC-EEEEeCCEeecCC-HHHHHH
Confidence 542 2344 6789999887665 445553
No 240
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=20.88 E-value=9e+02 Score=24.66 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=26.4
Q ss_pred cCCceEEEEEcCCCCCChHHHHHHHHHhhcCCCeEEE
Q 011596 309 VKDYEFVAIFDADFQPNPDFLRRTVPHFKDNEELGLV 345 (482)
Q Consensus 309 ~a~~d~Vl~lDaD~~~~pd~L~~lv~~f~~~p~v~~V 345 (482)
...+|+|++-|.|.++.|+.|..+-. ....|...-.
T Consensus 176 ~~~dDliivSDvDEIP~p~~l~~Lr~-cd~~p~~l~l 211 (356)
T PF04724_consen 176 IQDDDLIIVSDVDEIPSPETLKFLRW-CDGFPEPLHL 211 (356)
T ss_pred CCCCCEEEEcCcccccCHHHHHHHHh-cCCCCCeeEE
Confidence 56799999999999999999977643 3333543333
No 241
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=20.77 E-value=8.2e+02 Score=24.12 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=53.2
Q ss_pred EeecCCchHHHHHHHHHHHhCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHh-------------------hhCCCeEEE
Q 011596 226 QIPMCNEKEVYQQSIAAVCNLDWPKSKILIQVLDDSDDPTAQTLIKEEVLKW-------------------QEAGANIVY 286 (482)
Q Consensus 226 iIP~yne~~~l~~tL~Sll~q~yp~~~~~IiVvDdssdd~t~~~~~~~~~~~-------------------~~~~v~vv~ 286 (482)
++|..+. ..+.-++.++.+.... + |+|+-+...+...+.+... ..+ ...+.++.+
T Consensus 33 l~pv~g~-pii~~~l~~l~~~gi~--~--i~vv~~~~~~~i~~~~~~~-~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~ 106 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAAGIT--E--IVLVTHSSKNSIENHFDTS-FELEAMLEKRVKRQLLDEVQSICPPHVTIMQ 106 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHCCCC--E--EEEEeCCCHHHHHHHHccc-hhhhhhhhhhhhhHHHHhhhhccccCceEEE
Confidence 4566665 7888999998886432 3 3334333333333333210 000 001234444
Q ss_pred EeccCCCCCccccHHHHhhhcccCCceEEEEEcCCCCCC-------hHHHHHHHHHhhc
Q 011596 287 RHRILRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPN-------PDFLRRTVPHFKD 338 (482)
Q Consensus 287 ~~~~~~~g~Ka~aln~al~~~~~a~~d~Vl~lDaD~~~~-------pd~L~~lv~~f~~ 338 (482)
....... |-++++..+... ..+.+ ++++-+|...+ ...+.+++..+.+
T Consensus 107 ~~q~~~~-Gtg~Av~~a~~~--~~~~~-~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~ 161 (302)
T PRK13389 107 VRQGLAK-GLGHAVLCAHPV--VGDEP-VAVILPDVILDEYESDLSQDNLAEMIRRFDE 161 (302)
T ss_pred eecCCCC-ChHHHHHHHHHH--cCCCC-EEEEeCcceecccccccccccHHHHHHHHHh
Confidence 3222223 366777666653 23334 45666887764 3577788886654
No 242
>PF14979 TMEM52: Transmembrane 52
Probab=20.01 E-value=3.1e+02 Score=24.08 Aligned_cols=32 Identities=6% Similarity=0.189 Sum_probs=23.0
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHhCCCCCC
Q 011596 220 FPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKS 251 (482)
Q Consensus 220 ~P~VsViIP~yne~~~l~~tL~Sll~q~yp~~ 251 (482)
.+...+-|-..+.+..+..|+.|+..-.||..
T Consensus 61 ~~P~~~TVia~D~DSt~hsTvTS~sSVq~P~~ 92 (154)
T PF14979_consen 61 PQPYEVTVIAVDSDSTLHSTVTSYSSVQYPAG 92 (154)
T ss_pred CCCceEEEEeccCCccccchhhhhhccccccc
Confidence 34445555566777789999999988888863
Done!